Citrus Sinensis ID: 012718
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | 2.2.26 [Sep-21-2011] | |||||||
| Q93WX6 | 463 | Cysteine desulfurase 2, c | yes | no | 0.997 | 0.987 | 0.769 | 0.0 | |
| Q55793 | 420 | Probable cysteine desulfu | N/A | no | 0.888 | 0.969 | 0.621 | 1e-150 | |
| O32164 | 406 | Probable cysteine desulfu | yes | no | 0.871 | 0.982 | 0.513 | 1e-121 | |
| Q9K7A0 | 406 | Probable cysteine desulfu | yes | no | 0.873 | 0.985 | 0.520 | 1e-118 | |
| Q9XAD5 | 418 | Probable cysteine desulfu | yes | no | 0.895 | 0.980 | 0.494 | 1e-117 | |
| Q8CTA4 | 413 | Probable cysteine desulfu | yes | no | 0.866 | 0.961 | 0.507 | 1e-116 | |
| Q5HQQ0 | 413 | Probable cysteine desulfu | yes | no | 0.866 | 0.961 | 0.504 | 1e-115 | |
| Q8NXH0 | 413 | Probable cysteine desulfu | yes | no | 0.866 | 0.961 | 0.509 | 1e-115 | |
| Q6GB11 | 413 | Probable cysteine desulfu | yes | no | 0.866 | 0.961 | 0.509 | 1e-115 | |
| Q6GIH2 | 413 | Probable cysteine desulfu | yes | no | 0.866 | 0.961 | 0.509 | 1e-115 |
| >sp|Q93WX6|NFS2_ARATH Cysteine desulfurase 2, chloroplastic OS=Arabidopsis thaliana GN=NFS2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/464 (76%), Positives = 399/464 (85%), Gaps = 7/464 (1%)
Query: 1 MEAVVPKLASF-NLLNPKSKSKSAIR-----RFSSALCVSSSPSVTSTDSVSLGHITRPD 54
ME V KL SF N ++ +S S +R SA SS+ T ++SVSLGH R D
Sbjct: 1 MEGVAMKLPSFPNAISIGHRSFSRVRCSSSLSVCSAAAASSATISTDSESVSLGHRVRKD 60
Query: 55 FPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE 114
F ILHQEV GSK LVYLD+AATSQKP AVL ALQNYYE YNSNVHRGIH+LSAKATDE+E
Sbjct: 61 FRILHQEVNGSK-LVYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFE 119
Query: 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPW 174
LARKKVA FINASDS EIVFT+NATEAINLVAYSWGLSNLK GDEVILTVAEHHS IVPW
Sbjct: 120 LARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPW 179
Query: 175 QLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS 234
Q+V+QKTGA LKF+ LN+DE PD++KL+E++S KTKLV +HH+SN+LAS LPIEEIV W+
Sbjct: 180 QIVSQKTGAVLKFVTLNEDEVPDINKLRELISPKTKLVAVHHVSNVLASSLPIEEIVVWA 239
Query: 235 HDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL 294
HDVGAKVLVDACQSVPHMVVDVQ L+ADFLVASSHKMCGPTGIGFL+GKSDLL +MPPFL
Sbjct: 240 HDVGAKVLVDACQSVPHMVVDVQKLNADFLVASSHKMCGPTGIGFLYGKSDLLHSMPPFL 299
Query: 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAK 354
GGGEMISDVFLDHST+A+PPSRFEAGTPAIGEAI LGAA+DYLS IGM KIH YE+E+ K
Sbjct: 300 GGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSGIGMPKIHEYEVEIGK 359
Query: 355 YLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCA 414
YLYE L S+P++RIYGP+PSE V R ALCSFNVE +HPTD+AT LDQQ+GVA RSGHHCA
Sbjct: 360 YLYEKLSSLPDVRIYGPRPSESVHRGALCSFNVEGLHPTDLATFLDQQHGVAIRSGHHCA 419
Query: 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVFK 458
QPLHRYLGVNASARASL+FYNTK+DVD FI AL +TVSFFN FK
Sbjct: 420 QPLHRYLGVNASARASLYFYNTKDDVDAFIVALADTVSFFNSFK 463
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Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 6 |
| >sp|Q55793|CSD_SYNY3 Probable cysteine desulfurase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=csd PE=1 SV=1 | Back alignment and function description |
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Score = 530 bits (1366), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/410 (62%), Positives = 311/410 (75%), Gaps = 3/410 (0%)
Query: 46 SLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFL 105
SL R DFPIL+QE+ G LVYLDNAATSQKP AVL+ L +YYE N+NVHRG H L
Sbjct: 8 SLAATVRQDFPILNQEING-HPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQL 66
Query: 106 SAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVA 165
S +ATD YE R KVA FINA EIV+T+NATEAINLVAYSWG++NLK+GDE+I TV
Sbjct: 67 SVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVM 126
Query: 166 EHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL 225
EHHS +VPWQ+VA KTGA LKF+ L++ ES DL+ K +LS KTKLV + HISN L +
Sbjct: 127 EHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVN 186
Query: 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSD 285
P EEI +H GAKVLVDACQS PH +DVQ +D D+LVAS HKMC PTGIGFL+GK +
Sbjct: 187 PAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE 246
Query: 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345
+L AMPPF GGGEMI++VF DH T + P +FEAGTPAI EAI LGAA+DYL+ +GM+ I
Sbjct: 247 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENI 306
Query: 346 HAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGV 405
H YE+EL YL++ L IP +R+YGP P +H RAAL SFNV +H +D+AT++DQ G+
Sbjct: 307 HNYEVELTHYLWQGLGQIPQLRLYGPNP-KHGDRAALASFNVAGLHASDVATMVDQD-GI 364
Query: 406 ATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
A RSGHHC QPLHR + SARASL+FYNTKE++D F+ +L T+ FF+
Sbjct: 365 AIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFS 414
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Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|O32164|CSD_BACSU Probable cysteine desulfurase OS=Bacillus subtilis (strain 168) GN=csd PE=3 SV=1 | Back alignment and function description |
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Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/407 (51%), Positives = 284/407 (69%), Gaps = 8/407 (1%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R FPILHQ+V G LVYLD+AATSQKP AV++ L YY YNSNVHRG+H L +ATD
Sbjct: 7 REQFPILHQQVNG-HDLVYLDSAATSQKPRAVIETLDKYYNQYNSNVHRGVHTLGTRATD 65
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
YE AR+KV FINA EI+FTK T ++N+VA S+ +NLK GDEV++T EHH+ I
Sbjct: 66 GYEGAREKVRKFINAKSMAEIIFTKGTTTSLNMVALSYARANLKPGDEVVITYMEHHANI 125
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
+PWQ + TGA LK++ L +D + L+ ++E ++ TK+V + H+SN+L ++ PI+E+
Sbjct: 126 IPWQQAVKATGATLKYIPLQEDGTISLEDVRETVTSNTKIVAVSHVSNVLGTVNPIKEMA 185
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+HD GA ++VD QS PHM +DVQ LD DF SSHKMCGPTG+G L+GK LL M
Sbjct: 186 KIAHDNGAVIVVDGAQSTPHMKIDVQDLDCDFFALSSHKMCGPTGVGVLYGKKALLENME 245
Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEME 351
P GGEMI V L ST+ + P +FEAGTP I AIGLGAAID+L IG+ +I +E +
Sbjct: 246 PAEFGGEMIDFVGLYESTWKELPWKFEAGTPIIAGAIGLGAAIDFLEEIGLDEISRHEHK 305
Query: 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGH 411
LA Y E + + +YGP+ +RA L +FN++++HP D+AT+LD + G+A R+GH
Sbjct: 306 LAAYALERFRQLDGVTVYGPE-----ERAGLVTFNLDDVHPHDVATVLDAE-GIAVRAGH 359
Query: 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF-NVF 457
HCAQPL ++L V A+ARAS + YNT+E++D+ + AL +T +F NVF
Sbjct: 360 HCAQPLMKWLDVTATARASFYLYNTEEEIDKLVEALQKTKEYFTNVF 406
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Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q9K7A0|CSD_BACHD Probable cysteine desulfurase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=csd PE=3 SV=2 | Back alignment and function description |
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Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/407 (52%), Positives = 279/407 (68%), Gaps = 7/407 (1%)
Query: 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAK 108
H + FP+L QEV GS LVYLD+AATSQKPIAV++AL +YY YNSNVHRG+H L
Sbjct: 4 HEIKKLFPVLDQEVNGSP-LVYLDSAATSQKPIAVIEALDDYYRRYNSNVHRGVHTLGTL 62
Query: 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHH 168
ATD YE AR+K+ FI+AS + EI+FT+ T AINLVA S+G +NL GDE+++T EHH
Sbjct: 63 ATDGYEGAREKIRRFIHASSTEEIIFTRGTTTAINLVAASYGRANLGEGDEIVITPMEHH 122
Query: 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228
S I+PWQ VA+ TGA L +L L D + ++ +++ +S KTK+V I H+SN+L +I P++
Sbjct: 123 SNIIPWQQVAKATGATLTYLPLQKDGTIKIEDVEKTISEKTKIVAIMHVSNVLGTINPVK 182
Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288
EI +H GA +LVD QS PHM +DVQ L DF S HKM GPTGIG L+GK L
Sbjct: 183 EIAEIAHRHGAIMLVDGAQSAPHMKIDVQELGCDFFAFSGHKMAGPTGIGVLYGKKAHLE 242
Query: 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY 348
M P GGEMI V L ST+ + P +FE GTP I AIGLGAAID+L IG+ +I +
Sbjct: 243 KMEPVEFGGEMIDFVGLYDSTWKELPWKFEGGTPIIAGAIGLGAAIDFLEDIGLDEIEKH 302
Query: 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATR 408
E ELA+Y + L + + +YGP+ +RA L +FN+E++HP D+AT+LD G+A R
Sbjct: 303 EHELAQYALDRLSELEGMTVYGPQ-----KRAGLVTFNIEDVHPHDVATVLDAD-GIAVR 356
Query: 409 SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
+GHHCAQPL ++L V A+ARAS + YNTKED+D L +T +F
Sbjct: 357 AGHHCAQPLMKWLDVTATARASFYLYNTKEDIDALAKGLEKTKEYFG 403
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Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q9XAD5|CSD_STRCO Probable cysteine desulfurase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=csd PE=3 SV=1 | Back alignment and function description |
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Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/423 (49%), Positives = 287/423 (67%), Gaps = 13/423 (3%)
Query: 37 PSVTSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNS 96
P + T+++ R DFPIL ++V+ KLVYLDNAATSQKP VL AL YYE YN+
Sbjct: 5 PGLLDTEAI------RKDFPILDRQVHDGHKLVYLDNAATSQKPRQVLDALSEYYERYNA 58
Query: 97 NVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSN--- 153
NVHRG+H L+ +AT YE AR KVA FINA E++FTKNA+E++NLVA G ++
Sbjct: 59 NVHRGVHVLAEEATALYEGARDKVAEFINAPSRDEVIFTKNASESLNLVANMLGWADDPY 118
Query: 154 -LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLV 212
+ E+++T EHHS IVPWQL+AQ+TGA L++ L DD DL + E+++ KTK+V
Sbjct: 119 RVDHETEIVITEMEHHSNIVPWQLLAQRTGAKLRWFGLTDDGRLDLSNIDEVITEKTKVV 178
Query: 213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC 272
+SN+L + P+E IV + +VGA V +DA Q+ PHM +DVQ L ADF+ + HKMC
Sbjct: 179 SFVLVSNILGTQNPVEAIVRRAQEVGALVCIDASQAAPHMPLDVQALQADFVAFTGHKMC 238
Query: 273 GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGA 332
GPTGIG L+G+ +LL +PPFLGGGEMI V + ST+A P +FEAGTP + +A+GLGA
Sbjct: 239 GPTGIGVLWGRQELLEDLPPFLGGGEMIETVSMHSSTYAPAPHKFEAGTPPVAQAVGLGA 298
Query: 333 AIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHP 392
AIDYL++IGM KI A+E L +Y + LL +P++RI GP +E +R A SF + +IHP
Sbjct: 299 AIDYLNSIGMDKILAHEHALTEYAVKRLLEVPDLRIIGPTTAE--ERGAAISFTLGDIHP 356
Query: 393 TDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452
D+ +LD+Q G+A R GHHCA+P+ G+ A+ RAS + Y+T ++D + L +
Sbjct: 357 HDVGQVLDEQ-GIAVRVGHHCARPVCLRYGIPATTRASFYLYSTPAEIDALVDGLEHVRN 415
Query: 453 FFN 455
FF
Sbjct: 416 FFG 418
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Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q8CTA4|CSD_STAES Probable cysteine desulfurase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/402 (50%), Positives = 280/402 (69%), Gaps = 5/402 (1%)
Query: 54 DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY 113
DFPIL Q+V +K+L YLD+ ATSQ P+ VL L +YY+ YNSNVHRG+H L + ATD Y
Sbjct: 14 DFPILEQKV-NNKRLAYLDSTATSQTPVQVLNVLDDYYKRYNSNVHRGVHTLGSLATDGY 72
Query: 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
E AR+ V FINA EI+FT+ T +IN+VA+S+G +N+ GDE+++T EHH+ IVP
Sbjct: 73 ENARETVRRFINAKYFEEIIFTRGTTASINIVAHSYGDANISEGDEIVVTEMEHHANIVP 132
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW 233
WQ +A++ A LKF+ + D LD +K ++ KTK+V I H+SN+L +I ++ I
Sbjct: 133 WQQLAKRKNATLKFIPMTKDGELQLDDIKATINDKTKIVAIAHVSNVLGTINDVKTIAKI 192
Query: 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293
+H+ GA + VD QS PHM +D+Q +DADF S HKM GPTGIG L+GK +LL M P
Sbjct: 193 AHEHGAVISVDGAQSAPHMALDMQDIDADFYSFSGHKMLGPTGIGVLYGKRELLQNMEPV 252
Query: 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353
GG+MI V ST+AD P++FEAGTP I +AIGL AI Y+ +G IH +E EL
Sbjct: 253 EFGGDMIDFVSKYDSTWADLPTKFEAGTPLIAQAIGLAEAIHYIENLGFNAIHQHEKELT 312
Query: 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHC 413
+Y YE +L+I + IYGP P + +RA + +FN+ +IHP D+AT +D + GVA R+GHHC
Sbjct: 313 EYAYEQMLTIDGLEIYGP-PKD--RRAGVITFNLADIHPHDVATAVDTE-GVAVRAGHHC 368
Query: 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
AQPL ++LGV+++ARAS + YNTKEDVD+ + AL +T FF+
Sbjct: 369 AQPLMKWLGVSSTARASFYVYNTKEDVDQLVQALKQTKEFFS 410
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Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q5HQQ0|CSD_STAEQ Probable cysteine desulfurase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/402 (50%), Positives = 280/402 (69%), Gaps = 5/402 (1%)
Query: 54 DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY 113
DFPIL Q+V +K+L YLD+ ATSQ P+ VL L +YY+ YNSNVHRG+H L + ATD Y
Sbjct: 14 DFPILEQKV-NNKRLAYLDSTATSQTPVQVLNVLDDYYKRYNSNVHRGVHTLGSLATDGY 72
Query: 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
E AR+ V FINA EI+FT+ T +IN+VA+S+G +N+ GDE+++T EHH+ IVP
Sbjct: 73 ENARETVRRFINAKYFEEIIFTRGTTASINIVAHSYGDANISEGDEIVVTEMEHHANIVP 132
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW 233
WQ +A++ A LKF+ + D LD +K ++ KTK+V I H+SN+L +I ++ I
Sbjct: 133 WQQLAKRKNATLKFIPMTKDGELQLDDIKATINDKTKIVAIAHVSNVLGTINDVKTIAKI 192
Query: 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293
+H+ GA + VD QS PHM +D+Q +DADF S HKM GPTGIG L+GK +LL M P
Sbjct: 193 AHEHGAVISVDGAQSAPHMALDMQDIDADFYSFSGHKMLGPTGIGVLYGKRELLQNMEPV 252
Query: 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353
GG+MI V +T+AD P++FEAGTP I +AIGL AI Y+ +G IH +E EL
Sbjct: 253 EFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIHYIENLGFNAIHQHEKELT 312
Query: 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHC 413
+Y YE +L+I + IYGP P + +RA + +FN+ +IHP D+AT +D + GVA R+GHHC
Sbjct: 313 EYAYEQMLTIDGLEIYGP-PKD--RRAGVITFNLADIHPHDVATAVDTE-GVAVRAGHHC 368
Query: 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
AQPL ++LGV+++ARAS + YNTKEDVD+ + AL +T FF+
Sbjct: 369 AQPLMKWLGVSSTARASFYVYNTKEDVDQLVQALKQTKEFFS 410
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Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q8NXH0|CSD_STAAW Probable cysteine desulfurase OS=Staphylococcus aureus (strain MW2) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/402 (50%), Positives = 282/402 (70%), Gaps = 5/402 (1%)
Query: 54 DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY 113
DFPIL Q+V G K+L YLD+ ATSQ P+ VL L++YY+ YNSNVHRG+H L + ATD Y
Sbjct: 14 DFPILDQKVNG-KRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGY 72
Query: 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
E AR+ V FINA EI+FT+ T +INLVA+S+G +N++ GDE+++T EHH+ IVP
Sbjct: 73 ENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVP 132
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW 233
WQ +A++ A LKF+ + D +++ +K+ ++ KTK+V I HISN+L +I ++ I
Sbjct: 133 WQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEI 192
Query: 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293
+H GA + VD Q+ PHM +D+Q ++ADF S HKM GPTGIG LFGK +LL M P
Sbjct: 193 AHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPI 252
Query: 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353
GG+MI V +T+AD P++FEAGTP I +AIGL AI YL IG IH YE EL
Sbjct: 253 EFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELT 312
Query: 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHC 413
Y YE + +I I IYGP P + +RA + +FN++++HP D+AT +D + GVA R+GHHC
Sbjct: 313 IYAYEQMSAIEGIEIYGP-PKD--RRAGVITFNLQDVHPHDVATAVDTE-GVAVRAGHHC 368
Query: 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
AQPL ++L V+++ARAS + YNTKEDVD+ I+AL +T FF+
Sbjct: 369 AQPLMKWLNVSSTARASFYIYNTKEDVDQLINALKQTKEFFS 410
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain MW2) (taxid: 196620) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q6GB11|CSD_STAAS Probable cysteine desulfurase OS=Staphylococcus aureus (strain MSSA476) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/402 (50%), Positives = 282/402 (70%), Gaps = 5/402 (1%)
Query: 54 DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY 113
DFPIL Q+V G K+L YLD+ ATSQ P+ VL L++YY+ YNSNVHRG+H L + ATD Y
Sbjct: 14 DFPILDQKVNG-KRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGY 72
Query: 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
E AR+ V FINA EI+FT+ T +INLVA+S+G +N++ GDE+++T EHH+ IVP
Sbjct: 73 ENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVP 132
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW 233
WQ +A++ A LKF+ + D +++ +K+ ++ KTK+V I HISN+L +I ++ I
Sbjct: 133 WQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEI 192
Query: 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293
+H GA + VD Q+ PHM +D+Q ++ADF S HKM GPTGIG LFGK +LL M P
Sbjct: 193 AHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPI 252
Query: 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353
GG+MI V +T+AD P++FEAGTP I +AIGL AI YL IG IH YE EL
Sbjct: 253 EFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELT 312
Query: 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHC 413
Y YE + +I I IYGP P + +RA + +FN++++HP D+AT +D + GVA R+GHHC
Sbjct: 313 IYAYEQMSAIEGIEIYGP-PKD--RRAGVITFNLQDVHPHDVATAVDTE-GVAVRAGHHC 368
Query: 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
AQPL ++L V+++ARAS + YNTKEDVD+ I+AL +T FF+
Sbjct: 369 AQPLMKWLNVSSTARASFYIYNTKEDVDQLINALKQTKEFFS 410
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain MSSA476) (taxid: 282459) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q6GIH2|CSD_STAAR Probable cysteine desulfurase OS=Staphylococcus aureus (strain MRSA252) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/402 (50%), Positives = 282/402 (70%), Gaps = 5/402 (1%)
Query: 54 DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY 113
DFPIL Q+V G K+L YLD+ ATSQ P+ VL L++YY+ YNSNVHRG+H L + ATD Y
Sbjct: 14 DFPILDQKVNG-KRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGY 72
Query: 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
E AR+ V FINA EI+FT+ T +INLVA+S+G +N++ GDE+++T EHH+ IVP
Sbjct: 73 ENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVP 132
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW 233
WQ +A++ A LKF+ + D +++ +K+ ++ KTK+V I HISN+L +I ++ I
Sbjct: 133 WQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEI 192
Query: 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293
+H GA + VD Q+ PHM +D+Q ++ADF S HKM GPTGIG LFGK +LL M P
Sbjct: 193 AHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPI 252
Query: 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353
GG+MI V +T+AD P++FEAGTP I +AIGL AI YL IG IH YE EL
Sbjct: 253 EFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELT 312
Query: 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHC 413
Y YE + +I I IYGP P + +RA + +FN++++HP D+AT +D + GVA R+GHHC
Sbjct: 313 IYAYEQMSAIEGIEIYGP-PKD--RRAGVITFNLQDVHPHDVATAVDTE-GVAVRAGHHC 368
Query: 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
AQPL ++L V+++ARAS + YNTKEDVD+ I+AL +T FF+
Sbjct: 369 AQPLMKWLNVSSTARASFYIYNTKEDVDQLINALKQTKEFFS 410
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain MRSA252) (taxid: 282458) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| 255564466 | 469 | cysteine desulfurylase, putative [Ricinu | 0.997 | 0.974 | 0.789 | 0.0 | |
| 225435925 | 463 | PREDICTED: cysteine desulfurase 2, chlor | 0.993 | 0.982 | 0.794 | 0.0 | |
| 356555847 | 468 | PREDICTED: cysteine desulfurase 2, chlor | 0.986 | 0.965 | 0.771 | 0.0 | |
| 224106029 | 469 | predicted protein [Populus trichocarpa] | 1.0 | 0.976 | 0.756 | 0.0 | |
| 449444833 | 485 | PREDICTED: cysteine desulfurase 2, chlor | 0.989 | 0.934 | 0.746 | 0.0 | |
| 297849158 | 466 | hypothetical protein ARALYDRAFT_470910 [ | 0.997 | 0.980 | 0.762 | 0.0 | |
| 22329419 | 463 | cysteine desulfurase 2 [Arabidopsis thal | 0.997 | 0.987 | 0.769 | 0.0 | |
| 116789873 | 485 | unknown [Picea sitchensis] | 0.956 | 0.903 | 0.735 | 0.0 | |
| 6664318 | 526 | T27G7.17 [Arabidopsis thaliana] | 0.997 | 0.868 | 0.677 | 0.0 | |
| 212274653 | 460 | uncharacterized protein LOC100191757 [Ze | 0.936 | 0.932 | 0.714 | 0.0 |
| >gi|255564466|ref|XP_002523229.1| cysteine desulfurylase, putative [Ricinus communis] gi|223537525|gb|EEF39150.1| cysteine desulfurylase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/466 (78%), Positives = 414/466 (88%), Gaps = 9/466 (1%)
Query: 1 MEAVVPKLASFNLLNPKSKSKSA---IRRFSSALCVSSSPSVTSTD-----SVSLGHITR 52
M+ VV KL S LLNPKS + S+ + +FSS + + + T D S+SLGHITR
Sbjct: 5 MDGVVFKLPSIKLLNPKSTTHSSPIRLAKFSSFAIPALATTGTEGDQALHASLSLGHITR 64
Query: 53 PDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDE 112
PDFPILHQEV GSK LVYLDNAATSQKP +VLKA+QNYYE+YNSNVHRGIH+LSAKATDE
Sbjct: 65 PDFPILHQEVNGSK-LVYLDNAATSQKPNSVLKAIQNYYESYNSNVHRGIHYLSAKATDE 123
Query: 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIV 172
YELARKKVAAFINASDS EIVFT+NATEAINLVAYSWG +NLK GDEVILT+AEHHS IV
Sbjct: 124 YELARKKVAAFINASDSREIVFTRNATEAINLVAYSWGFTNLKPGDEVILTLAEHHSNIV 183
Query: 173 PWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVH 232
PWQLVA +TGA L+F++LN++E PD+ KLKE +S KTKLVV+HHISN+LAS LP+E+I+H
Sbjct: 184 PWQLVANRTGAVLRFVDLNENEVPDVLKLKETISEKTKLVVVHHISNVLASFLPVEDIIH 243
Query: 233 WSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP 292
W+H GAKVL+DACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFL+GKSD+LS MPP
Sbjct: 244 WAHGAGAKVLIDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLYGKSDILSTMPP 303
Query: 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352
FLGGGEMI+DVFLDHST+ADPPSRFEAGTPAIGEAIGLGAAIDYL IGMQKIH YEMEL
Sbjct: 304 FLGGGEMIADVFLDHSTYADPPSRFEAGTPAIGEAIGLGAAIDYLLGIGMQKIHDYEMEL 363
Query: 353 AKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHH 412
A YLYE+L S+P++RIYGPKPSE+V RAALCSFNVENIHPTDIAT LDQQ+GVA RSGHH
Sbjct: 364 ANYLYESLSSVPSVRIYGPKPSENVHRAALCSFNVENIHPTDIATFLDQQHGVAIRSGHH 423
Query: 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVFK 458
CAQPLHR+LGVNASARASLHFYNTKEDVD+FI ALN+T++FFN FK
Sbjct: 424 CAQPLHRHLGVNASARASLHFYNTKEDVDDFIQALNDTINFFNSFK 469
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435925|ref|XP_002267920.1| PREDICTED: cysteine desulfurase 2, chloroplastic [Vitis vinifera] gi|296083920|emb|CBI24308.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/463 (79%), Positives = 406/463 (87%), Gaps = 8/463 (1%)
Query: 3 AVVPKLASFNLLNPKSKSKSA------IRRFS-SALCVSSSPSVTSTDSVSLGHITRPDF 55
A V K SF LNP S ++ RRFS SA ++ +S SVSLGH+TRPDF
Sbjct: 2 ASVLKFPSFKFLNPNPISPTSASVQVGFRRFSCSAPSSAAVEGDSSIGSVSLGHLTRPDF 61
Query: 56 PILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYEL 115
PILHQEV GSK LVYLDNAATSQKP AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE
Sbjct: 62 PILHQEVNGSK-LVYLDNAATSQKPTAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYES 120
Query: 116 ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQ 175
AR+KVAAFINAS+ GEI+FT+NATEAINLVAYSWGLSNLK DE++LTVAEHHSAIVPWQ
Sbjct: 121 ARRKVAAFINASEPGEIIFTRNATEAINLVAYSWGLSNLKPEDEIVLTVAEHHSAIVPWQ 180
Query: 176 LVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSH 235
LVAQKTGA LKF+NL +DE PD++KLKEM+SRKTKL+V+HHISN+LAS LPI +IVHW+H
Sbjct: 181 LVAQKTGAILKFVNLTEDEVPDVEKLKEMISRKTKLLVVHHISNVLASALPIYDIVHWAH 240
Query: 236 DVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLG 295
VGAKVLVDACQSVPHM VDVQ LDADFLVASSHKMCGPTGIGFL+GKSDLL AMPPFLG
Sbjct: 241 AVGAKVLVDACQSVPHMAVDVQRLDADFLVASSHKMCGPTGIGFLYGKSDLLFAMPPFLG 300
Query: 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355
GGEMISDVFLDHSTFA+PPSRFEAGTPAIGEAIGLGAAIDYLS IGMQKIH YE++LA Y
Sbjct: 301 GGEMISDVFLDHSTFAEPPSRFEAGTPAIGEAIGLGAAIDYLSAIGMQKIHDYEVDLANY 360
Query: 356 LYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQ 415
LYE+L S+P + +YGP PS+ V RAALCSFNVENIHPTDIAT LDQQ+GVA RSGHHCAQ
Sbjct: 361 LYESLRSVPGVHVYGPAPSQTVFRAALCSFNVENIHPTDIATFLDQQHGVAIRSGHHCAQ 420
Query: 416 PLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVFK 458
PLHR+LGV+ASARASLHFYNTKEDVD FIHAL +T++FF+ FK
Sbjct: 421 PLHRHLGVSASARASLHFYNTKEDVDAFIHALVDTINFFSSFK 463
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555847|ref|XP_003546241.1| PREDICTED: cysteine desulfurase 2, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/468 (77%), Positives = 406/468 (86%), Gaps = 16/468 (3%)
Query: 1 MEAVVPKLASFNL--------LNPKSKS--KSAIRRFSSALCVSSSPSVTSTDSV---SL 47
ME ++PKL SF + +S S + RR S +C S+ + V SL
Sbjct: 1 MEVLLPKLPSFKFPSATYCCSITSRSSSYVRFGFRRVS--VCASTVNEAVAEPIVGFLSL 58
Query: 48 GHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSA 107
GH TRP FPILHQEV GSK LVYLDNAATSQKP AVLKALQNYYEAYNSNVHRGIHFLSA
Sbjct: 59 GHSTRPHFPILHQEVNGSK-LVYLDNAATSQKPTAVLKALQNYYEAYNSNVHRGIHFLSA 117
Query: 108 KATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEH 167
+ATDEYE AR+KVA+FINA DS EIVFTKNA+EAINLVAYSWGLSNLK DE+ILTVAEH
Sbjct: 118 RATDEYESARRKVASFINAIDSREIVFTKNASEAINLVAYSWGLSNLKPDDEIILTVAEH 177
Query: 168 HSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
HSAIVPWQ+VAQKTGA LKF++LN DE PD+DKLKEMLSRKTK+VV+HH+SN+LAS+LPI
Sbjct: 178 HSAIVPWQIVAQKTGAVLKFVDLNQDEIPDIDKLKEMLSRKTKIVVVHHVSNVLASVLPI 237
Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 287
++I W+HDVGAKVLVDACQSVPHM++DVQ L+ DFLVASSHKMCGPTGIGFL+GK DLL
Sbjct: 238 QDIAQWAHDVGAKVLVDACQSVPHMMIDVQSLNVDFLVASSHKMCGPTGIGFLYGKIDLL 297
Query: 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347
S+MPPFLGGGEMISDV+LDHST+A+PPSRFEAGTPAIGEAIGLGAAIDYLS IGMQ IH
Sbjct: 298 SSMPPFLGGGEMISDVYLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQTIHD 357
Query: 348 YEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVAT 407
YE+EL +YLYE LLS+PNIRIYGP PSE V+RAALCSFNVEN+HPTD+ATLLDQQ+GVA
Sbjct: 358 YEVELGRYLYERLLSVPNIRIYGPAPSEKVERAALCSFNVENLHPTDLATLLDQQHGVAI 417
Query: 408 RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
RSGHHCAQPLHRYLGV++SARASL+FYNTKEDVD FIHALN+TVSFF+
Sbjct: 418 RSGHHCAQPLHRYLGVSSSARASLYFYNTKEDVDNFIHALNDTVSFFS 465
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106029|ref|XP_002314018.1| predicted protein [Populus trichocarpa] gi|222850426|gb|EEE87973.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/469 (75%), Positives = 407/469 (86%), Gaps = 11/469 (2%)
Query: 1 MEAVVPKLASFNLLNPKS---KSKSAIRRFSSALCVSSSPSVTST--------DSVSLGH 49
M+ + K SF LNP + +S +R+FSS+ + ++T +SVSLG
Sbjct: 1 MDGMALKFPSFKFLNPNTSTIRSPPLLRKFSSSSSSLPVSASSTTLREAGPASNSVSLGQ 60
Query: 50 ITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKA 109
+TRPDFPILHQ++ LVYLDNAATSQKPI+VLKALQ+YYE+YNSNVHRGIH+LSAKA
Sbjct: 61 LTRPDFPILHQKINNGSNLVYLDNAATSQKPISVLKALQDYYESYNSNVHRGIHYLSAKA 120
Query: 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHS 169
T++YE AR+K+AAFINA +S EIVFT+NATEAINLVAY+WG +NLKSGDEV+LT+AEHHS
Sbjct: 121 TEKYEQAREKIAAFINAEESREIVFTRNATEAINLVAYTWGFANLKSGDEVLLTIAEHHS 180
Query: 170 AIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229
AIVPWQ VAQKTGA LKF+NLN+DE PD+ +LKEM+SRKTKLVV+HHISN LAS LPIE+
Sbjct: 181 AIVPWQFVAQKTGAVLKFVNLNEDEVPDVLQLKEMISRKTKLVVVHHISNTLASSLPIED 240
Query: 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA 289
IVHW+H V AKVLVDACQSVPHM VDV+ LDADFLVASSHKMCGPTG+GFL+GKSD+LS
Sbjct: 241 IVHWAHAVEAKVLVDACQSVPHMPVDVRDLDADFLVASSHKMCGPTGVGFLYGKSDILST 300
Query: 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
MPPFLGGGEMISDVFLDHST+A+PPSRFEAGTPAIGEAIGLGAAIDYL IGMQKIH YE
Sbjct: 301 MPPFLGGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLQGIGMQKIHEYE 360
Query: 350 MELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRS 409
MELA YLYENL ++PNIRIYGPKPS+ V RAALCSFNV+NIHPTD+AT LDQQ+GVA RS
Sbjct: 361 MELANYLYENLSTVPNIRIYGPKPSKGVNRAALCSFNVKNIHPTDLATFLDQQHGVAIRS 420
Query: 410 GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVFK 458
GHHCAQPLHRYLG+NASARASL+FYNTKEDVD FIHALN+TVSFF+ FK
Sbjct: 421 GHHCAQPLHRYLGINASARASLYFYNTKEDVDYFIHALNDTVSFFDSFK 469
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444833|ref|XP_004140178.1| PREDICTED: cysteine desulfurase 2, chloroplastic-like [Cucumis sativus] gi|449481029|ref|XP_004156061.1| PREDICTED: cysteine desulfurase 2, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/489 (74%), Positives = 403/489 (82%), Gaps = 36/489 (7%)
Query: 1 MEAVVPKLASFN------LLNPKSKSKSAIRRFSSALCVSSSP-------------SVTS 41
ME +V K SF+ +NP I FSS L SSSP SV++
Sbjct: 2 MEGMVLKSPSFHSQFHFQFMNPNR----CISCFSSTLRASSSPLLRFRNPRLPSHFSVSA 57
Query: 42 T------------DSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQN 89
+ +S+SLGH TRPDFPILHQEV GSK LVYLDNAATSQKPI+VL ALQN
Sbjct: 58 SASTAKETDSLHLNSLSLGHTTRPDFPILHQEVNGSK-LVYLDNAATSQKPISVLNALQN 116
Query: 90 YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149
YY+AYNSNVHRGIHFLSAKATDEYE ARKKVA+FINA D+ EIVFT+NATEAINLVAYSW
Sbjct: 117 YYQAYNSNVHRGIHFLSAKATDEYERARKKVASFINAGDAKEIVFTRNATEAINLVAYSW 176
Query: 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT 209
GL+NLKSGDE+ILTVAEHHSAIVPWQLVA++TGA LKF+NL + + P+L LKEM S KT
Sbjct: 177 GLANLKSGDEIILTVAEHHSAIVPWQLVAERTGAVLKFVNLGEHDVPNLKDLKEMFSTKT 236
Query: 210 KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269
KLVV HH+SN+LAS+LPI EIV +H GAKVLVDACQSVPHMVVDVQ LDADFLVASSH
Sbjct: 237 KLVVTHHVSNVLASVLPIGEIVGLAHRFGAKVLVDACQSVPHMVVDVQALDADFLVASSH 296
Query: 270 KMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIG 329
KMCGPTGIGFL+GK DLLSAMPPFLGGGEMISDVFLDHSTFA PPSRFEAGTPAIGEAIG
Sbjct: 297 KMCGPTGIGFLYGKIDLLSAMPPFLGGGEMISDVFLDHSTFAQPPSRFEAGTPAIGEAIG 356
Query: 330 LGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN 389
LGAAIDYLS IGMQKIH+YE ELA YLYENL ++PNIRIYGP P+ HVQRAALCSFN+ +
Sbjct: 357 LGAAIDYLSGIGMQKIHSYEEELANYLYENLRAVPNIRIYGPAPTAHVQRAALCSFNIGD 416
Query: 390 IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449
IHPTDIAT LDQQ+GVA RSGHHCAQPLHR LGV++SAR SL+FYNTKEDVD FI ALN+
Sbjct: 417 IHPTDIATFLDQQHGVAIRSGHHCAQPLHRALGVSSSARVSLYFYNTKEDVDYFIQALND 476
Query: 450 TVSFFNVFK 458
TVSFF+ FK
Sbjct: 477 TVSFFDSFK 485
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849158|ref|XP_002892460.1| hypothetical protein ARALYDRAFT_470910 [Arabidopsis lyrata subsp. lyrata] gi|297338302|gb|EFH68719.1| hypothetical protein ARALYDRAFT_470910 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/467 (76%), Positives = 395/467 (84%), Gaps = 10/467 (2%)
Query: 1 MEAVVPKLASFNLLNPKSKS---------KSAIRRFSSALCVSSSPSVTSTDSVSLGHIT 51
ME V KL SF L P + S + + + SS+ T ++SVSLGH
Sbjct: 1 MEGVAMKLPSFKSLAPNAISIGHRSFSRVRRSSSLSVCSAASSSATISTDSESVSLGHRV 60
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DF ILHQ V GSK LVYLD+AATSQKP AVL ALQNYYE YNSNVHRGIH+LSAKATD
Sbjct: 61 RNDFRILHQVVNGSK-LVYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATD 119
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
E+ELARKKVA FINASDS EIVFT+NATEAINLVAYSWGLSNLK GDEVILTVAEHHS I
Sbjct: 120 EFELARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSCI 179
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ+V+QKTGA LKF+ LNDDE PD++KL+EM+S KTKLV +HH+SN+LAS LPIEEIV
Sbjct: 180 VPWQIVSQKTGAVLKFVTLNDDEVPDIEKLREMISPKTKLVAVHHVSNVLASSLPIEEIV 239
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
W+HDVGAKVLVDACQSVPHMVVDVQ L+ADFLVASSHKMCGPTGIGFL+GKSDLL +MP
Sbjct: 240 VWAHDVGAKVLVDACQSVPHMVVDVQKLNADFLVASSHKMCGPTGIGFLYGKSDLLHSMP 299
Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEME 351
PFLGGGEMISDVFLDHST+A+PPSRFEAGTPAIGEAI LGAA+DYLS IGM KIH YE+E
Sbjct: 300 PFLGGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSGIGMPKIHEYEVE 359
Query: 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGH 411
L KYLYE L S+P++RIYGP+PSE V R ALCSFNVE +HPTD+AT LDQQ+GVA RSGH
Sbjct: 360 LGKYLYEKLSSLPDVRIYGPRPSESVHRGALCSFNVEGLHPTDLATFLDQQHGVAIRSGH 419
Query: 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVFK 458
HCAQPLHRYLGVNASARASL+FYNTKED+D FI AL +TVSFFN FK
Sbjct: 420 HCAQPLHRYLGVNASARASLYFYNTKEDIDSFIVALADTVSFFNSFK 466
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329419|ref|NP_172325.2| cysteine desulfurase 2 [Arabidopsis thaliana] gi|75249321|sp|Q93WX6.1|NFS2_ARATH RecName: Full=Cysteine desulfurase 2, chloroplastic; AltName: Full=NIFS-like protein; AltName: Full=Plastid sufS-like protein; AltName: Full=Protein AtCpNifS; AltName: Full=Selenocysteine lyase; Flags: Precursor gi|16152176|gb|AAL14994.1|AF419347_1 NIFS-like protein CpNifsp precursor [Arabidopsis thaliana] gi|20453112|gb|AAM19798.1| At1g08490/T27G7_14 [Arabidopsis thaliana] gi|23506185|gb|AAN31104.1| At1g08490/T27G7_14 [Arabidopsis thaliana] gi|27085243|gb|AAL79956.1| cysteine desulfurase [Arabidopsis thaliana] gi|332190177|gb|AEE28298.1| cysteine desulfurase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/464 (76%), Positives = 399/464 (85%), Gaps = 7/464 (1%)
Query: 1 MEAVVPKLASF-NLLNPKSKSKSAIR-----RFSSALCVSSSPSVTSTDSVSLGHITRPD 54
ME V KL SF N ++ +S S +R SA SS+ T ++SVSLGH R D
Sbjct: 1 MEGVAMKLPSFPNAISIGHRSFSRVRCSSSLSVCSAAAASSATISTDSESVSLGHRVRKD 60
Query: 55 FPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE 114
F ILHQEV GSK LVYLD+AATSQKP AVL ALQNYYE YNSNVHRGIH+LSAKATDE+E
Sbjct: 61 FRILHQEVNGSK-LVYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFE 119
Query: 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPW 174
LARKKVA FINASDS EIVFT+NATEAINLVAYSWGLSNLK GDEVILTVAEHHS IVPW
Sbjct: 120 LARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPW 179
Query: 175 QLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS 234
Q+V+QKTGA LKF+ LN+DE PD++KL+E++S KTKLV +HH+SN+LAS LPIEEIV W+
Sbjct: 180 QIVSQKTGAVLKFVTLNEDEVPDINKLRELISPKTKLVAVHHVSNVLASSLPIEEIVVWA 239
Query: 235 HDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL 294
HDVGAKVLVDACQSVPHMVVDVQ L+ADFLVASSHKMCGPTGIGFL+GKSDLL +MPPFL
Sbjct: 240 HDVGAKVLVDACQSVPHMVVDVQKLNADFLVASSHKMCGPTGIGFLYGKSDLLHSMPPFL 299
Query: 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAK 354
GGGEMISDVFLDHST+A+PPSRFEAGTPAIGEAI LGAA+DYLS IGM KIH YE+E+ K
Sbjct: 300 GGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSGIGMPKIHEYEVEIGK 359
Query: 355 YLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCA 414
YLYE L S+P++RIYGP+PSE V R ALCSFNVE +HPTD+AT LDQQ+GVA RSGHHCA
Sbjct: 360 YLYEKLSSLPDVRIYGPRPSESVHRGALCSFNVEGLHPTDLATFLDQQHGVAIRSGHHCA 419
Query: 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVFK 458
QPLHRYLGVNASARASL+FYNTK+DVD FI AL +TVSFFN FK
Sbjct: 420 QPLHRYLGVNASARASLYFYNTKDDVDAFIVALADTVSFFNSFK 463
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116789873|gb|ABK25420.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/442 (73%), Positives = 378/442 (85%), Gaps = 4/442 (0%)
Query: 18 SKSKSAIRRFSSALCVSSSPSVTST-DSVSLGHITRPDFPILHQEVYGSKKLVYLDNAAT 76
S+ K + R SA VS+ +V + ++ SLG IT+PDFPIL QEV GS+ LVYLDNAAT
Sbjct: 47 SRQKRGVGRAMSA--VSTPLNVNANPETASLGEITKPDFPILKQEVNGSR-LVYLDNAAT 103
Query: 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK 136
SQKP V+ A++ YYEAYN+NVHRGIHFLSAKATDEYELARKKVA FINA S EIVFT+
Sbjct: 104 SQKPQFVIDAVREYYEAYNANVHRGIHFLSAKATDEYELARKKVADFINAGGSREIVFTR 163
Query: 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESP 196
NATEAINLVAYSWGL+NLK+GDE+IL++AEHHS IVPWQ+VAQKTGA LKF+NLN+ E P
Sbjct: 164 NATEAINLVAYSWGLTNLKAGDEIILSIAEHHSVIVPWQIVAQKTGAVLKFVNLNEREVP 223
Query: 197 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV 256
DL++LK++L KTKLV IHH+SN L ILPI+EIVHW+ GA+VLVDACQSVPHM VDV
Sbjct: 224 DLEQLKQLLCEKTKLVAIHHVSNTLGCILPIQEIVHWTQKYGARVLVDACQSVPHMSVDV 283
Query: 257 QGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316
Q L DFLVASSHKMCGPTGIGFL+GKS+LL++MPPFLGGGEMI+DVFLDHST+A+PPSR
Sbjct: 284 QQLGVDFLVASSHKMCGPTGIGFLYGKSELLTSMPPFLGGGEMIADVFLDHSTYAEPPSR 343
Query: 317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH 376
FEAGTPAIGEAIGLGAAIDYLS IGMQ+IH YE+ELA YLY++L ++ N+RIYGP P+
Sbjct: 344 FEAGTPAIGEAIGLGAAIDYLSGIGMQRIHEYELELANYLYQSLSNVSNVRIYGPAPNAT 403
Query: 377 VQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNT 436
RAALCSF VEN+HPTDIAT LDQQ+GVA RSGHHCAQPLHRYLG NAS RASL+FYNT
Sbjct: 404 SGRAALCSFTVENVHPTDIATFLDQQHGVAVRSGHHCAQPLHRYLGTNASCRASLYFYNT 463
Query: 437 KEDVDEFIHALNETVSFFNVFK 458
K++VD FI L +T+SFF F+
Sbjct: 464 KDEVDTFIKGLKDTISFFTSFQ 485
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6664318|gb|AAF22900.1|AC006932_17 T27G7.17 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/527 (67%), Positives = 399/527 (75%), Gaps = 70/527 (13%)
Query: 1 MEAVVPKLASF-NLLNPKSKSKSAIR-----RFSSALCVSSSPSVTSTDSVSLGHITRPD 54
ME V KL SF N ++ +S S +R SA SS+ T ++SVSLGH R D
Sbjct: 1 MEGVAMKLPSFPNAISIGHRSFSRVRCSSSLSVCSAAAASSATISTDSESVSLGHRVRKD 60
Query: 55 FPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE 114
F ILHQEV GSK LVYLD+AATSQKP AVL ALQNYYE YNSNVHRGIH+LSAKATDE+E
Sbjct: 61 FRILHQEVNGSK-LVYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFE 119
Query: 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPW 174
LARKKVA FINASDS EIVFT+NATEAINLVAYSWGLSNLK GDEVILTVAEHHS IVPW
Sbjct: 120 LARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPW 179
Query: 175 QLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM------------LA 222
Q+V+QKTGA LKF+ LN+DE PD++KL+E++S KTKLV +HH+SN+ LA
Sbjct: 180 QIVSQKTGAVLKFVTLNEDEVPDINKLRELISPKTKLVAVHHVSNVLEGKYLTYVSFCLA 239
Query: 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK---MCGPTGIGF 279
S LPIEEIV W+HDVGAKVLVDACQSVPHMVVDVQ L+ADFLVASSHK MCGPTGIGF
Sbjct: 240 SSLPIEEIVVWAHDVGAKVLVDACQSVPHMVVDVQKLNADFLVASSHKVGIMCGPTGIGF 299
Query: 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339
L+GKSDLL +MPPFLGGGEMISDVFLDHST+A+PPSRFEAGTPAIGEAI LGAA+DYLS
Sbjct: 300 LYGKSDLLHSMPPFLGGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSG 359
Query: 340 IGMQKIHAYEM--------ELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH 391
IGM KIH YE+ E+ KYLYE L S+P++RIYGP+PSE V R ALCSFNVE +H
Sbjct: 360 IGMPKIHEYEILISCVIQVEIGKYLYEKLSSLPDVRIYGPRPSESVHRGALCSFNVEGLH 419
Query: 392 PTDIATLLDQ----------------------------------------QYGVATRSGH 411
PTD+AT LDQ Q+GVA RSGH
Sbjct: 420 PTDLATFLDQQIKQIHLDRSNVNRPPQTPTLLSHQNIHSGMKTENEYCMLQHGVAIRSGH 479
Query: 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVFK 458
HCAQPLHRYLGVNASARASL+FYNTK+DVD FI AL +TVSFFN FK
Sbjct: 480 HCAQPLHRYLGVNASARASLYFYNTKDDVDAFIVALADTVSFFNSFK 526
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|212274653|ref|NP_001130656.1| uncharacterized protein LOC100191757 [Zea mays] gi|194689756|gb|ACF78962.1| unknown [Zea mays] gi|223949161|gb|ACN28664.1| unknown [Zea mays] gi|238011162|gb|ACR36616.1| unknown [Zea mays] gi|413924704|gb|AFW64636.1| hypothetical protein ZEAMMB73_601161 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/431 (71%), Positives = 356/431 (82%), Gaps = 2/431 (0%)
Query: 25 RRFSSALCVSSSPSVTSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVL 84
RR A V++ PS + SLGH TR DFPILHQE + KLVY DN ATSQKP +V+
Sbjct: 29 RRGWCAAAVAA-PSREAEPVSSLGHRTRVDFPILHQE-FDDAKLVYFDNGATSQKPCSVM 86
Query: 85 KALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144
K L YY +YNSNVHRGIH LSAKAT YE AR+KVA F+NA+DS EIVFT+NATEAINL
Sbjct: 87 KTLDEYYRSYNSNVHRGIHALSAKATHAYEDARRKVANFVNAADSREIVFTRNATEAINL 146
Query: 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM 204
VAYSWGLSNLK GDE++LTVAEHHSAIVPWQ V+QKTGA LK++ L + PD+++LK
Sbjct: 147 VAYSWGLSNLKEGDEIVLTVAEHHSAIVPWQFVSQKTGATLKYVGLTKENVPDIEQLKGF 206
Query: 205 LSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFL 264
LS KTK+VV+HH+SN+L S+LPIEEIV WS+ VGAKVLVDACQSVPHM VDVQ L ADFL
Sbjct: 207 LSNKTKIVVVHHVSNVLGSMLPIEEIVTWSNRVGAKVLVDACQSVPHMPVDVQKLGADFL 266
Query: 265 VASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAI 324
VASSHKMCGPTG+GFL GK ++LS+M PFLGGGEMI+DVF D ST+A+PPSRFEAGTPAI
Sbjct: 267 VASSHKMCGPTGVGFLHGKFEILSSMEPFLGGGEMIADVFEDKSTYAEPPSRFEAGTPAI 326
Query: 325 GEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCS 384
GEAIGLGAAIDYLS IGM++IH YE EL YLYE+LLS+PN++IYGP PS+ V RA LCS
Sbjct: 327 GEAIGLGAAIDYLSCIGMEQIHEYEKELGTYLYESLLSVPNVQIYGPAPSQTVHRAPLCS 386
Query: 385 FNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444
FN+EN+HPTDIA +LD Q+ VA RSGHHCAQ LHR LG+NASARASLHFYNTK++VD F+
Sbjct: 387 FNIENVHPTDIAEILDLQHSVAIRSGHHCAQILHRTLGINASARASLHFYNTKDEVDTFV 446
Query: 445 HALNETVSFFN 455
AL TV F
Sbjct: 447 DALKATVDFLT 457
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| TAIR|locus:2201856 | 463 | CPNIFS "chloroplastic NIFS-lik | 0.997 | 0.987 | 0.730 | 5.7e-178 | |
| TIGR_CMR|BA_5215 | 406 | BA_5215 "cysteine desulfurase | 0.875 | 0.987 | 0.506 | 8.3e-106 | |
| TIGR_CMR|CBU_1357 | 405 | CBU_1357 "selenocysteine lyase | 0.866 | 0.980 | 0.449 | 5e-92 | |
| UNIPROTKB|Q9EXP2 | 412 | sufS "Cysteine desulfurase" [D | 0.851 | 0.946 | 0.454 | 1.5e-90 | |
| UNIPROTKB|P77444 | 406 | sufS [Escherichia coli K-12 (t | 0.849 | 0.958 | 0.453 | 2e-88 | |
| UNIPROTKB|P63516 | 417 | csd "Probable cysteine desulfu | 0.866 | 0.952 | 0.444 | 9.9e-87 | |
| UNIPROTKB|Q9KPQ7 | 404 | csd "Probable cysteine desulfu | 0.858 | 0.972 | 0.422 | 4.9e-85 | |
| TIGR_CMR|VC_2309 | 404 | VC_2309 "aminotransferase, cla | 0.858 | 0.972 | 0.422 | 4.9e-85 | |
| TIGR_CMR|SPO_2014 | 406 | SPO_2014 "cysteine desulfurase | 0.849 | 0.958 | 0.422 | 1.2e-81 | |
| UNIPROTKB|Q8EAV2 | 456 | sufS "Cysteine desulfurase" [S | 0.847 | 0.850 | 0.435 | 5.4e-79 |
| TAIR|locus:2201856 CPNIFS "chloroplastic NIFS-like cysteine desulfurase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
Identities = 339/464 (73%), Positives = 377/464 (81%)
Query: 1 MEAVVPKLASF-NLLNPKSKSKSAIR-----RFXXXXXXXXXXXXXXXXXXXLGHITRPD 54
ME V KL SF N ++ +S S +R LGH R D
Sbjct: 1 MEGVAMKLPSFPNAISIGHRSFSRVRCSSSLSVCSAAAASSATISTDSESVSLGHRVRKD 60
Query: 55 FPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE 114
F ILHQEV GSK LVYLD+AATSQKP AVL ALQNYYE YNSNVHRGIH+LSAKATDE+E
Sbjct: 61 FRILHQEVNGSK-LVYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFE 119
Query: 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPW 174
LARKKVA FINASDS EIVFT+NATEAINLVAYSWGLSNLK GDEVILTVAEHHS IVPW
Sbjct: 120 LARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPW 179
Query: 175 QLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS 234
Q+V+QKTGA LKF+ LN+DE PD++KL+E++S KTKLV +HH+SN+LAS LPIEEIV W+
Sbjct: 180 QIVSQKTGAVLKFVTLNEDEVPDINKLRELISPKTKLVAVHHVSNVLASSLPIEEIVVWA 239
Query: 235 HDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL 294
HDVGAKVLVDACQSVPHMVVDVQ L+ADFLVASSHKMCGPTGIGFL+GKSDLL +MPPFL
Sbjct: 240 HDVGAKVLVDACQSVPHMVVDVQKLNADFLVASSHKMCGPTGIGFLYGKSDLLHSMPPFL 299
Query: 295 GGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYEMELAK 354
GGGEMISDVFLDHST+A+PPSRFEAGTP DYLS IGM KIH YE+E+ K
Sbjct: 300 GGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIALGAAVDYLSGIGMPKIHEYEVEIGK 359
Query: 355 YLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCA 414
YLYE L S+P++RIYGP+PSE V R ALCSFNVE +HPTD+AT LDQQ+GVA RSGHHCA
Sbjct: 360 YLYEKLSSLPDVRIYGPRPSESVHRGALCSFNVEGLHPTDLATFLDQQHGVAIRSGHHCA 419
Query: 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVFK 458
QPLHRYLGVNASARASL+FYNTK+DVD FI AL +TVSFFN FK
Sbjct: 420 QPLHRYLGVNASARASLYFYNTKDDVDAFIVALADTVSFFNSFK 463
|
|
| TIGR_CMR|BA_5215 BA_5215 "cysteine desulfurase SufS" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
Identities = 207/409 (50%), Positives = 280/409 (68%)
Query: 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAK 108
H R FPIL Q+V G K+LVY D+AATSQKPI V++ L+ YY+ YNSNVHRG+H L K
Sbjct: 4 HEIRKQFPILDQKVNG-KQLVYFDSAATSQKPIQVIETLERYYKEYNSNVHRGVHTLGTK 62
Query: 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHH 168
ATD YE AR+KV FINA EI+FT T A+N VA S+GL N+K GDE++++ EHH
Sbjct: 63 ATDAYEGAREKVRKFINAKSMEEIIFTCGTTTALNTVAASYGLENVKEGDEIVISYMEHH 122
Query: 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228
S I+PWQ VA+KTGA LK+L L D + ++ ++ ++ TK+V I ++SN+L +I P++
Sbjct: 123 SNIIPWQQVAKKTGATLKYLPLQPDGTISIEDARQTITPNTKIVSIMYVSNVLGTINPVK 182
Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288
EI +H+ GA ++VD QS PHM VDVQ L+ DF S+HKMCGPTGIG L+GK +LL+
Sbjct: 183 EIGAIAHENGAIMVVDGAQSTPHMKVDVQDLNCDFYALSAHKMCGPTGIGVLYGKKELLN 242
Query: 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAY 348
M P GGEMI V L ST+ + P +FEAGTP D+L IG+ I +
Sbjct: 243 NMEPIEFGGEMIDFVDLQESTWKELPWKFEAGTPIIGNAIGLGAAIDFLEEIGLDNIEKH 302
Query: 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATR 408
E ELA+Y E L + + IYGPK H RA L +FN+E++HP D+AT+LD + G+A R
Sbjct: 303 EHELAQYALERLSEVDGVTIYGPK---H--RAGLVTFNIEDVHPHDVATVLDVE-GIAVR 356
Query: 409 SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF-NV 456
+GHHCAQPL ++L +++ARAS + YNTKE++D F+ +L +T +F NV
Sbjct: 357 AGHHCAQPLMKWLKASSTARASFYLYNTKEEIDTFVESLIKTKEYFTNV 405
|
|
| TIGR_CMR|CBU_1357 CBU_1357 "selenocysteine lyase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 181/403 (44%), Positives = 260/403 (64%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFP+L Q ++G K LVYLD AT+QKP AV+ A+ +YY N+NVHRGI+ LS +AT
Sbjct: 8 RDDFPLLKQLIHG-KPLVYLDTGATAQKPQAVMDAVSHYYCQDNANVHRGIYELSERATR 66
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
YE +R+K+ FINA+D+ EI+FT AT +INLVA S+G +K GDE++++ EHHS I
Sbjct: 67 NYEESREKIKTFINAADAREIIFTHGATGSINLVAASFGALQVKRGDEILISAMEHHSNI 126
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQL+ ++ A LK + ++D+ D+D + +L+++TKLV + HISN+L ++ P+++++
Sbjct: 127 VPWQLLCERVNAKLKVIPVDDNGVLDIDAYQRLLTKRTKLVGLIHISNVLGTVNPVKDMI 186
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H VL+D Q++ H VDVQ LD DF V SSHK+ GPTG+G L+GK+ L MP
Sbjct: 187 QLAHQNKTPVLLDGAQAISHREVDVQDLDCDFYVFSSHKLYGPTGVGVLYGKAKWLETMP 246
Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYEME 351
P+ GGG+MIS V + + + P +FEAGTP DY++ IG +KI +E E
Sbjct: 247 PYQGGGDMISRVSFEKTDYNVVPYKFEAGTPNMGGVIGMGAAIDYVTRIGFEKIKLHENE 306
Query: 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGH 411
L Y E L IP +RI G P +A+ SF + HP DI+T+LD + G+A R+GH
Sbjct: 307 LMCYAAEQLQKIPGLRIIGNAPD----KASAISFVMAQAHPHDISTILDNE-GIAIRAGH 361
Query: 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454
HCA PL + A+AR + YNT +DVD + L+ + F
Sbjct: 362 HCAMPLMDRFNLPATARVTFGIYNTTQDVDRLVEGLHRVIQLF 404
|
|
| UNIPROTKB|Q9EXP2 sufS "Cysteine desulfurase" [Dickeya dadantii 3937 (taxid:198628)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 181/398 (45%), Positives = 256/398 (64%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFPIL Q V G + L YLD+AA++QKP+AV+ +++Y + VHRGIH LSA+AT
Sbjct: 14 RADFPILQQSVNG-QPLAYLDSAASAQKPLAVIDRERDFYLHEYAAVHRGIHTLSARATS 72
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
E R KVA FI+A+ + +IVF + TEAINLVA S+G + + GD ++++ EHH+ I
Sbjct: 73 AMEEVRAKVATFIHAASAEDIVFVRGTTEAINLVANSYGRTAFQPGDNLVISEMEHHANI 132
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ++AQ G L+ L + DD D+ +L +L +T+LV + +SN+L ++ P+ EI+
Sbjct: 133 VPWQMLAQARGLTLRVLPITDDGELDMAQLPALLDERTRLVAVTQVSNVLGTVNPLAEII 192
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GAKVLVD Q+V H VDVQ LD DF S HK+ GP+GIG L+GKS+LL AMP
Sbjct: 193 RQAHACGAKVLVDGAQAVMHQAVDVQALDCDFYAFSGHKLYGPSGIGVLYGKSELLQAMP 252
Query: 292 PFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYEM 350
P+ GGG MI +V L +T+ADPP RFEAG+P DY+S +G+ I A+E
Sbjct: 253 PWEGGGAMIREVSLTQGTTYADPPWRFEAGSPHVAGIIGLGAALDYVSALGVDAIQAHEG 312
Query: 351 ELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSG 410
L +Y +L +P +R+YGP V R + +FN+ H D+ + LDQ YG+A R+G
Sbjct: 313 LLMRYALASLAEVPTLRLYGP-----VHRQGVIAFNLGRHHAFDVGSFLDQ-YGIAIRTG 366
Query: 411 HHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448
HHCA PL GV + RASL Y+ ++++D + L+
Sbjct: 367 HHCAMPLMSRYGVPSMCRASLALYSCQDEIDRLVAGLH 404
|
|
| UNIPROTKB|P77444 sufS [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 180/397 (45%), Positives = 245/397 (61%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFP+L +EV G L YLD+AA++QKP V+ A +Y + VHRGIH LSA+AT+
Sbjct: 9 RADFPVLSREVNGLP-LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 67
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
+ E RK+ + FINA + E+VF + TE INLVA SWG SN+++GD +I++ EHH+ I
Sbjct: 68 KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ++ + GA L+ + LN D + L+ L + KT+L+ I H+SN+L + P+ E++
Sbjct: 128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GAKVLVD Q+V H VDVQ LD DF V S HK+ GPTGIG L+ K LL MP
Sbjct: 188 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247
Query: 292 PFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYEM 350
P+ GGG MI+ V L +T+ P RFEAGTP +Y+S +G+ I YE
Sbjct: 248 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQ 307
Query: 351 ELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSG 410
L Y L S+P++ +YGP+ R + +FN+ H D+ + LD YG+A R+G
Sbjct: 308 NLMHYALSQLESVPDLTLYGPQ-----NRLGVIAFNLGKHHAYDVGSFLDN-YGIAVRTG 361
Query: 411 HHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447
HHCA PL Y V A RASL YNT E+VD + L
Sbjct: 362 HHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGL 398
|
|
| UNIPROTKB|P63516 csd "Probable cysteine desulfurase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 181/407 (44%), Positives = 240/407 (58%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFPIL + + G L YLD+ ATSQ+P+ VL A + + A N VHRG H L +ATD
Sbjct: 14 RADFPILKRIMRGGNPLAYLDSGATSQRPLQVLDAEREFLTASNGAVHRGAHQLMEEATD 73
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS----GDEVILTVAEH 167
YE R +A F+ A D+ E+VFTKNATEA+NLV+Y G S + GD ++ T EH
Sbjct: 74 AYEQGRADIALFVGA-DTDELVFTKNATEALNLVSYVLGDSRFERAVGPGDVIVTTELEH 132
Query: 168 HSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
H+ ++PWQ +A++TGA L++ + DD DLD L L + K+V H SN+ + P+
Sbjct: 133 HANLIPWQELARRTGATLRWYGVTDDGRIDLDSL--YLDDRVKVVAFTHHSNVTGVLTPV 190
Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 287
E+V +H GA ++DACQSVPH VD+ L DF S HKM GP GIG L+G+ +LL
Sbjct: 191 SELVSRAHQSGALTVLDACQSVPHQPVDLHELGVDFAAFSGHKMLGPNGIGVLYGRRELL 250
Query: 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHA 347
+ MPPFL GG MI V ++ +T+A P RFEAGTP YL IGM + A
Sbjct: 251 AQMPPFLTGGSMIETVTMEGATYAPAPQRFEAGTPMTSQVVGLAAAARYLGAIGMAAVEA 310
Query: 348 YEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVAT 407
+E EL E L I +RI GP R + +F VE +H D+ +LD GVA
Sbjct: 311 HERELVAAAIEGLSGIDGVRILGPTSMR--DRGSPVAFVVEGVHAHDVGQVLDDG-GVAV 367
Query: 408 RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454
R GHHCA PLHR G+ A+ARAS YNT ++VD + + + FF
Sbjct: 368 RVGHHCALPLHRRFGLAATARASFAVYNTADEVDRLVAGVRRSRHFF 414
|
|
| UNIPROTKB|Q9KPQ7 csd "Probable cysteine desulfurase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 169/400 (42%), Positives = 254/400 (63%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R FP L Q V G+ LVYLD+AAT+QKP V+ A+ +YY +N+NVHRG H L+A+AT
Sbjct: 9 RAQFPALQQIVNGNP-LVYLDSAATTQKPQCVIDAISHYYSQHNANVHRGSHSLTAQATS 67
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
++E AR++VA FI A S I++T+ ATEA+NL+A S+ S L++GDE++++ EHH+ I
Sbjct: 68 QFEGAREQVAQFIGAPSSKNIIWTRGATEALNLIAQSYARSTLQAGDEILVSETEHHANI 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ+VA++TGA + + + L +++LS + K+V + HI+N+ + PIE ++
Sbjct: 128 VPWQMVAEQTGAKVVKIPMTTTGEFGLAAFRQLLSPRCKIVALAHITNVTGTRQPIEAVI 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GA V++D Q + H VDV+ LDADF V S HK+ P GIG L+GK+ LL AMP
Sbjct: 188 QAAHQQGAIVVIDGAQGIVHETVDVRALDADFYVFSGHKLYAPAGIGVLYGKTALLEAMP 247
Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYEME 351
P+ GGG+M+ V D +TF P +FEAGTP D+ ++ + A+ +
Sbjct: 248 PWHGGGKMVEKVSFDGTTFTGLPGKFEAGTPNVAGAIALATAIDWYQSLDRAAVEAHLHQ 307
Query: 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGH 411
L + Y+ + I +IR+ G +P+ A++ S ++ +H D+ATLLDQQ G+A R+GH
Sbjct: 308 LQQQAYQAISQIDDIRVLGYQPN-----ASVLSLVMDGVHHQDLATLLDQQ-GIAVRAGH 361
Query: 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451
HCA PL GV + R S YN+ E+V+ I A+++ V
Sbjct: 362 HCAHPLMDAFGVKGTVRISFGVYNSAEEVERLIAAIHKAV 401
|
|
| TIGR_CMR|VC_2309 VC_2309 "aminotransferase, class V" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 169/400 (42%), Positives = 254/400 (63%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R FP L Q V G+ LVYLD+AAT+QKP V+ A+ +YY +N+NVHRG H L+A+AT
Sbjct: 9 RAQFPALQQIVNGNP-LVYLDSAATTQKPQCVIDAISHYYSQHNANVHRGSHSLTAQATS 67
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
++E AR++VA FI A S I++T+ ATEA+NL+A S+ S L++GDE++++ EHH+ I
Sbjct: 68 QFEGAREQVAQFIGAPSSKNIIWTRGATEALNLIAQSYARSTLQAGDEILVSETEHHANI 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ+VA++TGA + + + L +++LS + K+V + HI+N+ + PIE ++
Sbjct: 128 VPWQMVAEQTGAKVVKIPMTTTGEFGLAAFRQLLSPRCKIVALAHITNVTGTRQPIEAVI 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GA V++D Q + H VDV+ LDADF V S HK+ P GIG L+GK+ LL AMP
Sbjct: 188 QAAHQQGAIVVIDGAQGIVHETVDVRALDADFYVFSGHKLYAPAGIGVLYGKTALLEAMP 247
Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYEME 351
P+ GGG+M+ V D +TF P +FEAGTP D+ ++ + A+ +
Sbjct: 248 PWHGGGKMVEKVSFDGTTFTGLPGKFEAGTPNVAGAIALATAIDWYQSLDRAAVEAHLHQ 307
Query: 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGH 411
L + Y+ + I +IR+ G +P+ A++ S ++ +H D+ATLLDQQ G+A R+GH
Sbjct: 308 LQQQAYQAISQIDDIRVLGYQPN-----ASVLSLVMDGVHHQDLATLLDQQ-GIAVRAGH 361
Query: 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451
HCA PL GV + R S YN+ E+V+ I A+++ V
Sbjct: 362 HCAHPLMDAFGVKGTVRISFGVYNSAEEVERLIAAIHKAV 401
|
|
| TIGR_CMR|SPO_2014 SPO_2014 "cysteine desulfurase SufS" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 168/398 (42%), Positives = 241/398 (60%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKAL-QNYYEAYNSNVHRGIHFLSAKAT 110
R +FPIL ++V G K L YLDN A++QKP AV+ A+ + Y E Y +NVHRG+HFLS AT
Sbjct: 8 RAEFPILSRQVNG-KPLTYLDNGASAQKPQAVIDAVTRGYAEEY-ANVHRGLHFLSNLAT 65
Query: 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSA 170
++YE R VA F+NA EIV TE IN+VAY W + +++GDE++L+ EHH+
Sbjct: 66 EKYEAVRGIVARFLNAGSEDEIVLNSGTTEGINMVAYGWAMPQMQAGDEIVLSTMEHHAN 125
Query: 171 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEI 230
IVPW + ++ G LK+++ D S D + + + +TKLV I H SN+L +++ ++ I
Sbjct: 126 IVPWHFLRERQGVVLKWVDPEPDGSLDPQAVLDAIGPRTKLVAITHCSNVLGTVVDVKSI 185
Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM 290
+ G VLVD Q HM VDVQ L DF + HK+ GP+G G ++ +++ L+ M
Sbjct: 186 CAGARAKGVPVLVDGSQGAVHMPVDVQDLGCDFYAITGHKLYGPSGSGAIYARAERLAEM 245
Query: 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYEM 350
PF+GGG+MI +V D + DPP +FEAGTP DY+ +GM+ I A+E
Sbjct: 246 RPFMGGGDMIKEVTKDTVIYNDPPMKFEAGTPGIVQTIGMGVALDYMMALGMENIAAHEA 305
Query: 351 ELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRS 409
L Y + + + G P +AA+ SF ++ H DI+T+LD++ GVA R+
Sbjct: 306 GLRDYAASRFAGLNWLNVQGHAPG----KAAIFSFTLQGAAHAHDISTILDKK-GVAVRA 360
Query: 410 GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447
GHHCA PL +LGV A+ RAS YNT+ +VD I AL
Sbjct: 361 GHHCAGPLMDHLGVTATCRASFGLYNTRAEVDTLIEAL 398
|
|
| UNIPROTKB|Q8EAV2 sufS "Cysteine desulfurase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 173/397 (43%), Positives = 232/397 (58%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R FP L Q + G L YLD AATSQKP VL A+ YY N+NVHR H LSA+AT
Sbjct: 60 RSQFPTLTQ-MLGDYPLCYLDTAATSQKPQCVLDAMAQYYLHDNANVHRAAHQLSARATS 118
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS-NLKSGDEVILTVAEHHSA 170
YE R ++ FINA EI+FT TE+INLVA+ GL+ LKSGD +++ A HH+
Sbjct: 119 SYENVRDQLQLFINAKRREEIIFTHGTTESINLVAF--GLTPQLKSGDLILIDSAAHHAN 176
Query: 171 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEI 230
IVPWQ +A++TGA +K + L D DL+ + +L K K+V + H+SN L ++ P+ E+
Sbjct: 177 IVPWQELAKRTGAIIKPIPLTQDCRLDLNAYQALLELKPKVVALCHVSNALGTVNPVVEL 236
Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM 290
V + GA LVD Q+V H+ VD+ +D DF V S HKM GPTGIG L+G+ ++L +
Sbjct: 237 VRQAKAQGALTLVDGAQAVAHLSVDMAAIDCDFYVFSGHKMYGPTGIGVLYGRFEILDTL 296
Query: 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYEM 350
P L GGEMI V D + F P+R EAGTP +L ++ A+E
Sbjct: 297 TPLLTGGEMIKRVSFDGTEFGSLPNRLEAGTPPISAVIGLGAAIRFLQLSLTLEVKAHEA 356
Query: 351 ELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSG 410
EL +YL L ++ ++ +YG H +FN+ + H D+ LLDQQ GVA R G
Sbjct: 357 ELLQYLQNQLRALGDVHLYGA----HSDNIGAIAFNLADEHHQDVGILLDQQ-GVAVRCG 411
Query: 411 HHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447
HHCA PL + L + RAS+ Y K D+D FI AL
Sbjct: 412 HHCAMPLMQTLNLKGCCRASIGIYTNKTDIDRFIAAL 448
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B5F7C4 | SUFS_SALA4 | 4, ., 4, ., 1, ., 1, 6 | 0.4761 | 0.8537 | 0.9630 | yes | no |
| Q93WX6 | NFS2_ARATH | 4, ., 4, ., 1, ., 1, 6 | 0.7693 | 0.9978 | 0.9870 | yes | no |
| B7MV59 | SUFS_ECO81 | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| B7NTV6 | SUFS_ECO7I | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| Q9HMM6 | CSD_HALSA | 2, ., 8, ., 1, ., 7 | 0.5037 | 0.8711 | 0.9614 | yes | no |
| Q5HQQ0 | CSD_STAEQ | 2, ., 8, ., 1, ., 7 | 0.5049 | 0.8668 | 0.9612 | yes | no |
| B5QVS9 | SUFS_SALEP | 4, ., 4, ., 1, ., 1, 6 | 0.4736 | 0.8537 | 0.9630 | yes | no |
| Q7CQN5 | SUFS_SALTY | 4, ., 4, ., 1, ., 1, 6 | 0.4736 | 0.8537 | 0.9630 | yes | no |
| Q6GIH2 | CSD_STAAR | 2, ., 8, ., 1, ., 7 | 0.5099 | 0.8668 | 0.9612 | yes | no |
| A9N142 | SUFS_SALPB | 4, ., 4, ., 1, ., 1, 6 | 0.4736 | 0.8537 | 0.9630 | yes | no |
| B7M0N5 | SUFS_ECO8A | 4, ., 4, ., 1, ., 1, 6 | 0.4661 | 0.8537 | 0.9630 | yes | no |
| B2U2I4 | SUFS_SHIB3 | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| B5FIM3 | SUFS_SALDC | 4, ., 4, ., 1, ., 1, 6 | 0.4711 | 0.8537 | 0.9630 | yes | no |
| B7LQ96 | SUFS_ESCF3 | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| A4W9R3 | SUFS_ENT38 | 4, ., 4, ., 1, ., 1, 6 | 0.4786 | 0.8537 | 0.9630 | yes | no |
| C4ZYE2 | SUFS_ECOBW | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| Q321D9 | SUFS_SHIBS | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| B6IBB9 | SUFS_ECOSE | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| B4TUT5 | SUFS_SALSV | 4, ., 4, ., 1, ., 1, 6 | 0.4736 | 0.8537 | 0.9630 | yes | no |
| O32164 | CSD_BACSU | 2, ., 8, ., 1, ., 7 | 0.5135 | 0.8711 | 0.9827 | yes | no |
| Q57PR2 | SUFS_SALCH | 4, ., 4, ., 1, ., 1, 6 | 0.4761 | 0.8537 | 0.9630 | yes | no |
| A1ABL8 | SUFS_ECOK1 | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| A7MF59 | SUFS_CROS8 | 4, ., 4, ., 1, ., 1, 6 | 0.4814 | 0.8646 | 0.9753 | yes | no |
| Q9XAD5 | CSD_STRCO | 2, ., 8, ., 1, ., 7 | 0.4940 | 0.8951 | 0.9808 | yes | no |
| A8A0M6 | SUFS_ECOHS | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| Q55793 | CSD_SYNY3 | 2, ., 8, ., 1, ., 7 | 0.6219 | 0.8886 | 0.9690 | N/A | no |
| Q6GB11 | CSD_STAAS | 2, ., 8, ., 1, ., 7 | 0.5099 | 0.8668 | 0.9612 | yes | no |
| C6DKM6 | SUFS_PECCP | 4, ., 4, ., 1, ., 1, 6 | 0.4611 | 0.8537 | 0.9606 | yes | no |
| B1XFY8 | SUFS_ECODH | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| Q8NXH0 | CSD_STAAW | 2, ., 8, ., 1, ., 7 | 0.5099 | 0.8668 | 0.9612 | yes | no |
| Q9EXP2 | SUFS_DICD3 | 4, ., 4, ., 1, ., 1, 6 | 0.4675 | 0.8558 | 0.9514 | yes | no |
| B7L5N2 | SUFS_ECO55 | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| Q1RBB6 | SUFS_ECOUT | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| B1LE56 | SUFS_ECOSM | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| Q3Z233 | SUFS_SHISS | 4, ., 4, ., 1, ., 1, 6 | 0.4711 | 0.8537 | 0.9630 | yes | no |
| P99177 | CSD_STAAN | 2, ., 8, ., 1, ., 7 | 0.5074 | 0.8668 | 0.9612 | yes | no |
| P63518 | CSD_STAAM | 2, ., 8, ., 1, ., 7 | 0.5074 | 0.8668 | 0.9612 | yes | no |
| B7MA32 | SUFS_ECO45 | 4, ., 4, ., 1, ., 1, 6 | 0.4686 | 0.8537 | 0.9630 | yes | no |
| B5RAT4 | SUFS_SALG2 | 4, ., 4, ., 1, ., 1, 6 | 0.4736 | 0.8537 | 0.9630 | yes | no |
| B4TGK9 | SUFS_SALHS | 4, ., 4, ., 1, ., 1, 6 | 0.4736 | 0.8537 | 0.9630 | yes | no |
| Q8CTA4 | CSD_STAES | 2, ., 8, ., 1, ., 7 | 0.5074 | 0.8668 | 0.9612 | yes | no |
| Q5HHH0 | CSD_STAAC | 2, ., 8, ., 1, ., 7 | 0.5099 | 0.8668 | 0.9612 | yes | no |
| B4T4R6 | SUFS_SALNS | 4, ., 4, ., 1, ., 1, 6 | 0.4736 | 0.8537 | 0.9630 | yes | no |
| Q9K7A0 | CSD_BACHD | 2, ., 8, ., 1, ., 7 | 0.5208 | 0.8733 | 0.9852 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.4.1.16 | 0.979 |
| 4th Layer | 2.8.1.7 | 0.979 |
| 3rd Layer | 2.8.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 458 | |||
| PLN02855 | 424 | PLN02855, PLN02855, Bifunctional selenocysteine ly | 0.0 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 0.0 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 0.0 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 1e-180 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 1e-179 | |
| PRK09295 | 406 | PRK09295, PRK09295, bifunctional cysteine desulfur | 1e-152 | |
| PRK10874 | 401 | PRK10874, PRK10874, cysteine sulfinate desulfinase | 1e-127 | |
| TIGR03392 | 398 | TIGR03392, FeS_syn_CsdA, cysteine desulfurase, cat | 1e-120 | |
| TIGR01977 | 376 | TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa | 8e-84 | |
| TIGR01976 | 397 | TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa | 1e-74 | |
| COG1104 | 386 | COG1104, NifS, Cysteine sulfinate desulfinase/cyst | 3e-48 | |
| TIGR03402 | 379 | TIGR03402, FeS_nifS, cysteine desulfurase NifS | 4e-43 | |
| PLN02651 | 364 | PLN02651, PLN02651, cysteine desulfurase | 6e-27 | |
| TIGR02006 | 402 | TIGR02006, IscS, cysteine desulfurase IscS | 2e-26 | |
| TIGR03235 | 353 | TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | 1e-25 | |
| PRK14012 | 404 | PRK14012, PRK14012, cysteine desulfurase; Provisio | 2e-25 | |
| TIGR03403 | 382 | TIGR03403, nifS_epsilon, cysteine desulfurase, Nif | 2e-25 | |
| PRK02948 | 381 | PRK02948, PRK02948, cysteine desulfurase; Provisio | 4e-15 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-14 | |
| TIGR04343 | 370 | TIGR04343, egtE_PLP_lyase, ergothioneine biosynthe | 3e-14 | |
| TIGR03301 | 355 | TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate amin | 3e-10 | |
| COG3844 | 407 | COG3844, COG3844, Kynureninase [Amino acid transpo | 2e-09 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 3e-08 | |
| PRK09331 | 387 | PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; | 2e-07 | |
| PRK13479 | 368 | PRK13479, PRK13479, 2-aminoethylphosphonate--pyruv | 3e-07 | |
| PLN02724 | 805 | PLN02724, PLN02724, Molybdenum cofactor sulfurase | 5e-07 | |
| COG0075 | 383 | COG0075, COG0075, Serine-pyruvate aminotransferase | 9e-07 | |
| TIGR03812 | 373 | TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase | 6e-06 | |
| TIGR01814 | 406 | TIGR01814, kynureninase, kynureninase | 6e-06 | |
| cd06452 | 361 | cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase | 7e-06 | |
| cd06451 | 356 | cd06451, AGAT_like, Alanine-glyoxylate aminotransf | 8e-06 | |
| TIGR02326 | 363 | TIGR02326, transamin_PhnW, 2-aminoethylphosphonate | 9e-06 | |
| PRK08045 | 386 | PRK08045, PRK08045, cystathionine gamma-synthase; | 1e-05 | |
| TIGR02539 | 370 | TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRN | 6e-05 | |
| COG1103 | 382 | COG1103, COG1103, Archaea-specific pyridoxal phosp | 6e-05 | |
| pfam01053 | 382 | pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP | 6e-05 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 1e-04 | |
| cd00614 | 369 | cd00614, CGS_like, CGS_like: Cystathionine gamma-s | 1e-04 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 1e-04 | |
| PRK08861 | 388 | PRK08861, PRK08861, cystathionine gamma-synthase; | 1e-04 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 3e-04 | |
| COG0626 | 396 | COG0626, MetC, Cystathionine beta-lyases/cystathio | 4e-04 | |
| COG0399 | 374 | COG0399, WecE, Predicted pyridoxal phosphate-depen | 5e-04 | |
| TIGR02080 | 382 | TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t | 7e-04 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 7e-04 | |
| TIGR01325 | 381 | TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul | 7e-04 | |
| TIGR01328 | 391 | TIGR01328, met_gam_lyase, methionine gamma-lyase | 8e-04 | |
| TIGR01329 | 378 | TIGR01329, cysta_beta_ly_E, cystathionine beta-lya | 8e-04 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 0.001 | |
| PRK08574 | 385 | PRK08574, PRK08574, cystathionine gamma-synthase; | 0.002 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 0.002 | |
| cd00616 | 352 | cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid s | 0.003 | |
| PLN02409 | 401 | PLN02409, PLN02409, serine--glyoxylate aminotransa | 0.004 |
| >gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Score = 825 bits (2132), Expect = 0.0
Identities = 337/419 (80%), Positives = 369/419 (88%), Gaps = 1/419 (0%)
Query: 40 TSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVH 99
S SVSLG TRPDFPIL Q V GSK LVYLDNAATSQKP AVL ALQ+YYE YNSNVH
Sbjct: 6 ASAASVSLGAETRPDFPILDQTVNGSK-LVYLDNAATSQKPAAVLDALQDYYEEYNSNVH 64
Query: 100 RGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDE 159
RGIH LSAKATD YELARKKVAAFINAS S EIVFT+NATEAINLVAY+WGL+NLK GDE
Sbjct: 65 RGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDE 124
Query: 160 VILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219
VIL+VAEHHS IVPWQLVAQKTGA LKF+ L DE D+++LKE+LS KTKLV HH+SN
Sbjct: 125 VILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSN 184
Query: 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGF 279
+L SILP+E+IVHW+H VGAKVLVDACQSVPHM VDVQ L ADFLVASSHKMCGPTGIGF
Sbjct: 185 VLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGF 244
Query: 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339
L+GKSDLL +MPPFLGGGEMISDVFLDHST+A PPSRFEAGTPAIGEAIGLGAAIDYLS
Sbjct: 245 LWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSE 304
Query: 340 IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLL 399
IGM +IH YE+EL YLYE L S+P +RIYGPKPSE V RAALC+FNVE IHPTD++T L
Sbjct: 305 IGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFL 364
Query: 400 DQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVFK 458
DQQ+GVA RSGHHCAQPLHRYLGVNASARASL+FYNTKE+VD FIHAL +T++FF+ FK
Sbjct: 365 DQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFSSFK 423
|
Length = 424 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 617 bits (1594), Expect = 0.0
Identities = 235/403 (58%), Positives = 298/403 (73%), Gaps = 4/403 (0%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFPIL +++ G K LVYLD+AATSQKP V+ A+ YY N+NVHRGIH LS +AT+
Sbjct: 4 RADFPILKRKING-KPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATE 62
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
YE R+KVA FINA+ EIVFT+ TE+INLVAYSWG SNLK+GDE++++ EHH+ I
Sbjct: 63 AYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANI 122
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQL+A++TGA LKF+ L+DD + DLD L+++L+ KTKLV I H+SN+L ++ P+EEI
Sbjct: 123 VPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIA 182
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H VGAKVLVD Q+VPHM VDVQ LD DF V S HKM GPTGIG L+GK +LL MP
Sbjct: 183 KLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMP 242
Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEME 351
PFLGGGEMI++V + +T+ + P +FEAGTP I IGLGAAIDYL IG++ I A+E E
Sbjct: 243 PFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHE 302
Query: 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGH 411
L Y E L IP +RIYGP+ +E R + SFNVE +HP D+ T+LD + G+A RSGH
Sbjct: 303 LTAYALERLGEIPGLRIYGPRDAE--DRGGIISFNVEGVHPHDVGTILD-EEGIAVRSGH 359
Query: 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454
HCAQPL R GV A+ RAS + YNT+ED+D + AL + FF
Sbjct: 360 HCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 605 bits (1562), Expect = 0.0
Identities = 217/379 (57%), Positives = 273/379 (72%), Gaps = 6/379 (1%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
VYLDNAATSQKP V+ A+ +YY YN+NVHRG+H LSA+ATD YE AR+KVA FINA
Sbjct: 1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPS 60
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
EI+FT+N TEAINLVAY G +N K GDE++ +V EHHS IVPWQ +A++TGA LK +
Sbjct: 61 PDEIIFTRNTTEAINLVAYGLGRAN-KPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVV 119
Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248
++DD DL+ L+++L+ +TKLV + H+SN+L +I P++EI +H+ G VLVD QS
Sbjct: 120 PVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQS 179
Query: 249 VPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308
HM VDVQ L DFL S HKM GPTGIG L+GK +LL MPP+ GGGEMI +V + +
Sbjct: 180 AGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEET 239
Query: 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368
T+AD P +FEAGTP I AIGLGAAIDYL IGM+ I A+E EL Y E L IP +R+
Sbjct: 240 TYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRV 299
Query: 369 YGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR 428
YG RA + SFN+E IHP D+AT+LD QYG+A R+GHHCAQPL R LGV + R
Sbjct: 300 YGDAE----DRAGVVSFNLEGIHPHDVATILD-QYGIAVRAGHHCAQPLMRRLGVPGTVR 354
Query: 429 ASLHFYNTKEDVDEFIHAL 447
AS YNT+E++D + AL
Sbjct: 355 ASFGLYNTEEEIDALVEAL 373
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 509 bits (1314), Expect = e-180
Identities = 219/401 (54%), Positives = 283/401 (70%), Gaps = 9/401 (2%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFP L +EV K LVYLDNAATSQKP AVL A+ YY YN+NVHRG H L+ +ATD
Sbjct: 9 RADFPALKREV--GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATD 66
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
YE AR+ VA F+NA S EIVFT+ TEA+NLVA G S LK GDE++++ EHHS I
Sbjct: 67 LYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRS-LKPGDEIVVSDLEHHSNI 125
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ +A++TGA ++ + L+DD DLD L+++++ KTKLV + H+SN+ ++ P++EI
Sbjct: 126 VPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIA 185
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAM 290
+H+ GA VLVDA Q+ H+ +DVQ L DFL S HK + GPTGIG L+ + +LL +
Sbjct: 186 ELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEEL 245
Query: 291 PPFLGGGEMISDV-FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
PFLGGG MI V + T A+ P RFEAGTP I AIGL AA+DYL IGM+ I A+E
Sbjct: 246 EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHE 305
Query: 350 MELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRS 409
EL +YL E L +P + IYGP ++ R + SFNV+ IHP D+ATLLD++ G+A R+
Sbjct: 306 RELTEYLLEGLSELPGVEIYGPPDAD---RGGIVSFNVKGIHPHDVATLLDEK-GIAVRA 361
Query: 410 GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450
GHHCAQPLHR LGV+A+ RASLH YNT+EDVD + AL +
Sbjct: 362 GHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKA 402
|
Length = 405 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 505 bits (1303), Expect = e-179
Identities = 208/375 (55%), Positives = 269/375 (71%), Gaps = 5/375 (1%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
+YLD+AAT+QKP AVL ALQ YY YN NVHRG+H L +AT YE AR+KVA FINA
Sbjct: 1 IYLDSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPS 60
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
EI+FT TEAINLVA S G S LK GDE+++T EHH+ +VPWQ +A++TGA ++ +
Sbjct: 61 DEEIIFTSGTTEAINLVAISLGRS-LKPGDEILVTEMEHHANLVPWQELAKRTGATVRVI 119
Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248
++ + DLD L+++L+ +TKLV I H+SN+ ++ P+EEI +H+ GA V+VDA Q+
Sbjct: 120 PVDPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQA 179
Query: 249 VPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308
V H +DVQ L DFL S HK+ GPTGIG L+G+ DLL +PP LGGG MI V L +
Sbjct: 180 VGHRPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPLLGGGGMIDTVSLQET 239
Query: 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368
TFAD PS+FEAGTP I IGLGAA+DYL+ IG++ I +E ELA YLYE LL+IP IR+
Sbjct: 240 TFADAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLAIPGIRL 299
Query: 369 YGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR 428
YGP +R ++ SFN +HP D+ATLLD + G+A RSGHHCAQPL LG+ + R
Sbjct: 300 YGPP---AERRPSIISFNFPGVHPHDVATLLD-ERGIAVRSGHHCAQPLMVRLGLGGTLR 355
Query: 429 ASLHFYNTKEDVDEF 443
ASL+FYNT+E+VD
Sbjct: 356 ASLYFYNTEEEVDRL 370
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Score = 438 bits (1127), Expect = e-152
Identities = 189/397 (47%), Positives = 254/397 (63%), Gaps = 8/397 (2%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFP+L +EV G L YLD+AA++QKP V+ A +Y + VHRGIH LSA+AT+
Sbjct: 9 RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 67
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
+ E RK+ A FINA + E+VF + TE INLVA SWG SN+++GD +I++ EHH+ I
Sbjct: 68 KMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANI 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ++ + GA L+ + LN D + L+ L + +T+L+ I H+SN+L + P+ E++
Sbjct: 128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMI 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GAKVLVD Q+V H VDVQ LD DF V S HK+ GPTGIG L+ K LL MP
Sbjct: 188 ALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247
Query: 292 PFLGGGEMISDVFLDH-STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEM 350
P+ GGG MI+ V L +T+A P RFEAGTP G IGLGAA+DY+S +G+ I YE
Sbjct: 248 PWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQ 307
Query: 351 ELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSG 410
L Y L S+P++ +YGP+ R + +FN+ H D+ + LD YG+A R+G
Sbjct: 308 NLMHYALSQLESVPDLTLYGPQ-----NRLGVIAFNLGKHHAYDVGSFLD-NYGIAVRTG 361
Query: 411 HHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447
HHCA PL Y V A RASL YNT E+VD + L
Sbjct: 362 HHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGL 398
|
Length = 406 |
| >gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Score = 374 bits (963), Expect = e-127
Identities = 163/404 (40%), Positives = 239/404 (59%), Gaps = 13/404 (3%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R FP L VYLD+AAT+ KP AV++A Q +Y NVHR + + T
Sbjct: 10 RAQFPALQDA------GVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTA 63
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
YE AR++VA +NA D+ IV+T+ TE+INLVA S+ L+ GDE+I++ AEHH+ +
Sbjct: 64 RYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL 123
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPW +VAQ+TGA + L L D PD+D L E+++ +T+++ + +SN+ + +
Sbjct: 124 VPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAI 183
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H G V+VD Q H DVQ LD DF S HK+ GPTGIG L+GKS+LL AM
Sbjct: 184 TLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMS 243
Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEME 351
P+ GGG+M+++V D T P RFEAGTP + IGL AA+++L+ I + + ++
Sbjct: 244 PWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRS 303
Query: 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGH 411
LA + L +P R + Q ++L +F+ +H +D+ TLL +YG+A R+G
Sbjct: 304 LATLAEDALAKLPGFRSF------RCQDSSLLAFDFAGVHHSDLVTLL-AEYGIALRAGQ 356
Query: 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
HCAQPL LGV + RAS YNT+ DVD ++A++ +
Sbjct: 357 HCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELLV 400
|
Length = 401 |
| >gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Score = 356 bits (916), Expect = e-120
Identities = 167/404 (41%), Positives = 240/404 (59%), Gaps = 13/404 (3%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R FP L VYLD+AAT+ KP AV+ A Q +Y + VHR H + T
Sbjct: 7 RQQFPAL------QDGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTA 60
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
YELAR++VA F+NA D+ IV+T+ TE+INLVA S+ L+ GDE+I++ AEHH+ +
Sbjct: 61 RYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL 120
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
+PW +VAQ+TGA + L + D PD+ +L E+L+ +T+++ + +SN+ + +
Sbjct: 121 IPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAI 180
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GA V+VD Q V H DVQ LD DF S HK+ GPTGIG L+GK++LL AMP
Sbjct: 181 TLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMP 240
Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEME 351
P+ GGG+M+S V D P RFEAGTP I IGL AA+++L+ I + A+ +
Sbjct: 241 PWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVS 300
Query: 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGH 411
LA E L +P R + ++L +F+ +H +D+A LL + G+A R+G
Sbjct: 301 LADLAEERLAQLPGFRSF------RCPGSSLLAFDFAGVHHSDLAALL-AESGIALRAGQ 353
Query: 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
HCAQPL LGV+ + RAS YNT++DVD + A+ + N
Sbjct: 354 HCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELLN 397
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 398 |
| >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein | Back alignment and domain information |
|---|
Score = 262 bits (671), Expect = 8e-84
Identities = 131/388 (33%), Positives = 211/388 (54%), Gaps = 20/388 (5%)
Query: 69 VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS 127
+Y DNAAT+ KP V +A+ ++Y+ Y + RG + L+ +A+ E E R+ +A NA
Sbjct: 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAP 60
Query: 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF 187
S +VFT NAT A+N+ GL LK GD VI T EH+S P + + ++ G +
Sbjct: 61 SSAHVVFTNNATTALNIALK--GL--LKEGDHVITTPMEHNSVARPLECLKEQIGVEITI 116
Query: 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
+ +++ +++K + TKL+V+ H SN+ +ILPIEEI + + G ++DA Q
Sbjct: 117 VKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQ 176
Query: 248 SVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306
+ + +D+ L D L + HK + GP G G L+ + + + P GG +D
Sbjct: 177 TAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI--KLKPLKSGGTGSHSALID 234
Query: 307 HSTFADPPSRFEAGT---PAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363
+ P RFE+GT P I GL A I ++ IG+ I E L + L L I
Sbjct: 235 QPSEL--PDRFESGTLNTPGI---AGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREI 289
Query: 364 PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV 423
++IYGP + R + SF VE I ++A +LD+++ +ATR+G HCA H+ +G
Sbjct: 290 NKVKIYGPA--DPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGT 347
Query: 424 NASA--RASLHFYNTKEDVDEFIHALNE 449
A+ R SL ++NT+E++++ + AL+E
Sbjct: 348 FATGTIRLSLGYFNTEEEIEKLLEALSE 375
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376 |
| >gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 1e-74
Identities = 141/415 (33%), Positives = 199/415 (47%), Gaps = 43/415 (10%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R FP L V+ DN A +Q P +V A+ N+N RG + S++ D
Sbjct: 7 RGQFPALADGDR-----VFFDNPAGTQIPQSVADAVSAALTRSNAN--RGGAYESSRRAD 59
Query: 112 EY-ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSA 170
+ + AR+ VA +NA D E+VF NAT L++ + GDEVI+T +H +
Sbjct: 60 QVVDDAREAVADLLNA-DPPEVVFGANATSLTFLLSRAIS-RRWGPGDEVIVTRLDHEAN 117
Query: 171 IVPWQLVAQKTGANLKFLNLNDDESP-DLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229
I PW A++ GA +K+ +++ D L +LS +T+LV + SN L SI+ +
Sbjct: 118 ISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAA 177
Query: 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA 289
I H GA V+VDA PH ++DVQ ADFL S++K GP +G L+G+ +LL
Sbjct: 178 ITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMN 236
Query: 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-------- 341
+PP+ L S P RFE GTP G+ AA+DYL+ +G
Sbjct: 237 LPPYK----------LTFSY-DTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRR 285
Query: 342 ------MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDI 395
Q I AYE LA+YL L +P + +YG R SF V + P +
Sbjct: 286 ERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLA--ARVPTVSFTVHGLPPQRV 343
Query: 396 ATLLDQQYGVATRSGHHCAQPLHRYLGVNAS---ARASLHFYNTKEDVDEFIHAL 447
L Q G+ +GH A L R LG+N R L YNT E+VD + AL
Sbjct: 344 VRRLADQ-GIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397 |
| >gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 3e-48
Identities = 111/405 (27%), Positives = 188/405 (46%), Gaps = 50/405 (12%)
Query: 69 VYLDNAATSQKPI--AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA 126
+YLDNAAT+ P+ VL+A+ Y N +H +A E AR+++A + A
Sbjct: 3 IYLDNAATT--PVDPEVLEAMLPYLTEVFGNPS-SLHSFGREARKAVEEAREQIAKLLGA 59
Query: 127 SDSGEIVFTKNATEAINLV--AYSWGLSNLKSGDEVILTVAEHHSAI--VPWQLVAQKTG 182
D EI+FT ATE+ NL + N + G +I + EH + + + ++ G
Sbjct: 60 -DPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRY---LERQG 115
Query: 183 ANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242
+ +L ++ + DL++L+E L T LV I H +N +I PI EI + G
Sbjct: 116 FEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFH 175
Query: 243 VDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL-GGGEMIS 301
VDA Q+V + +D++ L D L S+HK GP GIG L+ + + + P + GGG+
Sbjct: 176 VDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGV--RLEPLIHGGGQE-- 231
Query: 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361
R +GT + +G G A + ++ +++ +A +L L + LL
Sbjct: 232 -----------RGLR--SGTENVPGIVGFGKAAE-IAVEELEEENARLRKLRDRLEDGLL 277
Query: 362 S-IPNIRIYGPKPSEHVQRAA-LCSFNVENIHPTDIATLLDQQYGVATRSGHHCA----Q 415
IP++ + G R + +F+ + + LD G+A +G C+ +
Sbjct: 278 EIIPDVYLNGDD----EPRLPNILNFSFPGVEGESLLLALD-LAGIAVSTGSACSSGSLE 332
Query: 416 PLH--RYLGV-NASARASLHF----YNTKEDVDEFIHALNETVSF 453
P H R +G+ A S+ F + T+E++D AL E +
Sbjct: 333 PSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKR 377
|
Length = 386 |
| >gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 4e-43
Identities = 115/396 (29%), Positives = 182/396 (45%), Gaps = 39/396 (9%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
+YLDN AT++ VL+A+ Y+ Y N +H + E AR++VA + A
Sbjct: 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNP-SSMHSFGGEVGKAVEEAREQVAKLLGAEP 59
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
EI+FT TE+ N S L+ +I T EH + + Q + +K G + +L
Sbjct: 60 D-EIIFTSGGTESDNTAIKS-ALAAQPEKRHIITTAVEHPAVLSLCQHL-EKQGYKVTYL 116
Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248
++++ DL++L+ ++ T LV + +N +I PIEEI + + GA DA Q+
Sbjct: 117 PVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQA 176
Query: 249 VPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308
V + +D++ ++ D L S HK+ GP G+G L+ + P L GG H
Sbjct: 177 VGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGT--RFRPLLRGG---------HQ 225
Query: 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL-SIPNIR 367
AGT + +GLG A + L+T +++ + L L LL IP+ R
Sbjct: 226 ER-----GRRAGTENVPGIVGLGKAAE-LATEHLEEENTRVRALRDRLEAGLLARIPDAR 279
Query: 368 IYGPKPSEHVQR-AALCSFNVENIHPTDIATLLDQQYGVATRSGHHCA----QPLH--RY 420
+ G +R + + E I I LLD G+ SG C +P H R
Sbjct: 280 LNGDP----TKRLPNTVNISFEYIEGEAILLLLD-MEGICASSGSACTSGSLEPSHVLRA 334
Query: 421 LGV-----NASARASLHFYNTKEDVDEFIHALNETV 451
+GV + S R SL YNT+ED+D + L +
Sbjct: 335 MGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPII 370
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379 |
| >gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 6e-27
Identities = 111/389 (28%), Positives = 164/389 (42%), Gaps = 41/389 (10%)
Query: 69 VYLDNAATSQKPI--AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA 126
+YLD AT+ PI VL A+ + + N H H ++ D E AR +VAA I A
Sbjct: 1 LYLDMQATT--PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGA 58
Query: 127 SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186
D EI+FT ATE+ NL VI T EH ++ Q+ G +
Sbjct: 59 -DPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEH-KCVLDSCRHLQQEGFEVT 116
Query: 187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
+L + D DLD+L + T LV + ++N + I P+EEI + DA
Sbjct: 117 YLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAA 176
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP-FLGGGEMISDVFL 305
Q+V + VDV L D + S HK+ GP G+G L+ + + P GGG+
Sbjct: 177 QAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQ------- 229
Query: 306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IP 364
+GT +GLGAA + L+ M + L + L L + +
Sbjct: 230 --------ERGRRSGTENTPLVVGLGAACE-LAMKEMDYDEKHMKALRERLLNGLRAKLG 280
Query: 365 NIRIYGPKPSEHVQRAALC-SFNVENIHPTDIATLLDQQYGVATRSGHHC----AQPLH- 418
+R+ GP+ E R + + + +LL VA SG C +P +
Sbjct: 281 GVRVNGPRDPEK--RYPGTLNLSFAYVEG---ESLLMGLKEVAVSSGSACTSASLEPSYV 335
Query: 419 -RYLGVN-ASARASLHF----YNTKEDVD 441
R LGV A SL + T+E+VD
Sbjct: 336 LRALGVPEEMAHGSLRLGVGRFTTEEEVD 364
|
Length = 364 |
| >gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-26
Identities = 107/397 (26%), Positives = 170/397 (42%), Gaps = 38/397 (9%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
+YLD AAT+ V + + Y N H +A + E AR +VA I A D
Sbjct: 5 IYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGA-D 63
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
S EIVFT ATE+ NL G+ +I + EH + + + + ++ G + +L
Sbjct: 64 SREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLERE-GFEVTYL 122
Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248
+ DL++LK + T LV I H++N + I I I + VDA QS
Sbjct: 123 PPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQS 182
Query: 249 VPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308
V + ++V L D + S HK+ GP GIG L+ + + + GG H
Sbjct: 183 VGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGG--------GHE 234
Query: 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368
+GT + +G+G A ++ M + A+ + L L + SI + +
Sbjct: 235 ------RGMRSGTLPTHQIVGMGEAFR-IAKEEMAQDTAHVLALRDRLLNGIKSIEEVYL 287
Query: 369 YGPKPSEHVQRAAL-CSFN-VENIHPTDIATLLDQQYGVATRSGHHCA----QPLH--RY 420
G EH L SFN VE + I L D +A SG C +P + R
Sbjct: 288 NGDL--EHRVPGNLNVSFNYVEG--ESLIMALKD----LAVSSGSACTSASLEPSYVLRA 339
Query: 421 LGVN-----ASARASLHFYNTKEDVDEFIHALNETVS 452
LG+N +S R ++ + T+E++D + + +
Sbjct: 340 LGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAID 376
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402 |
| >gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 72/232 (31%), Positives = 108/232 (46%), Gaps = 4/232 (1%)
Query: 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS 129
YLD+ AT+ AV +A+ + N H A E ARK+VA + A D+
Sbjct: 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGA-DT 59
Query: 130 GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189
E++FT ATE+ NL + + G + I+T A H A++ ++ G + +L
Sbjct: 60 EEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLP 119
Query: 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
+++ D+D+L + + T LV I H++N SI PI EI A VDA Q V
Sbjct: 120 VDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVV 179
Query: 250 PHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDL---LSAMPPFLGGGE 298
+ VD+ D + S HK+ GP GIG L + P GGG+
Sbjct: 180 GKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQ 231
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353 |
| >gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-25
Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 14/220 (6%)
Query: 69 VYLDNAATSQKPIAVLKALQNYY--EAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA 126
+YLD +AT+ V + + Y + N H +A + ++AR ++A I A
Sbjct: 5 IYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGA 64
Query: 127 SDSGEIVFTKNATEAINL----VAYSWGLSNLKSGDEVILTVAEHHSAIVPW-QLVAQKT 181
D EIVFT ATE+ NL A+ + K G +I + EH + + QL ++
Sbjct: 65 -DPREIVFTSGATESDNLAIKGAAHFYQ----KKGKHIITSKTEHKAVLDTCRQL--ERE 117
Query: 182 GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKV 241
G + +L+ + DL+KL+ + T LV I H++N + I I I + G
Sbjct: 118 GFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIF 177
Query: 242 LVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF 281
VDA QSV + +D+ L D + S+HK+ GP GIG L+
Sbjct: 178 HVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALY 217
|
Length = 404 |
| >gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 109/408 (26%), Positives = 176/408 (43%), Gaps = 60/408 (14%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSN---VHR---GIHFLSAKATDEYELARKKVAA 122
VYLDN AT+ V + + ++ N +H+ H A+A D K+
Sbjct: 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALD-------KLYK 53
Query: 123 FINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD--EVILTVAEHHSAIVPWQLVAQK 180
INA D +I+ T ATE+ N V + G +I T EH A+ +
Sbjct: 54 GINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEH-PAVRATCAFLES 112
Query: 181 TGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAK 240
G + +L +N+ + ++++E ++ KT LV + +N I PI+EI + G
Sbjct: 113 LGVEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVL 172
Query: 241 VLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMI 300
DA Q++ + VDVQ DFL S+HK GP G+G L+ + + + P GGE +
Sbjct: 173 FHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGV--ELTPLFHGGEHM 230
Query: 301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEME----LAKYL 356
S + P A+GEA+ L A +YL +E L L
Sbjct: 231 GG---RRSGTLNVP-----YIVAMGEAMRL--ANEYLD---------FEKSHVRRLRDRL 271
Query: 357 YENLLSIPNIRIYGPKPSEH-VQRAALCSFNVENIHPTDIATLLD-QQYGVATRSGHHCA 414
+ LL +P++ + G + EH V L S ++ + A L D + G+A +G CA
Sbjct: 272 EDALLELPDVFVVGDR--EHRVPNTILIS--IKGVEGE--AMLWDLNKAGIAASTGSACA 325
Query: 415 ------QPLHRYLGVN-----ASARASLHFYNTKEDVDEFIHALNETV 451
P+ +G + + R SL + T+E++D I + V
Sbjct: 326 SEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAV 373
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation. Length = 382 |
| >gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 3/211 (1%)
Query: 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS 127
++YLD AAT+ L+ Q Y N +H + A+ ++ RK A I
Sbjct: 1 MIYLDYAATTPMSKEALQTYQKAASQYFGN-ESSLHDIGGTASSLLQVCRKTFAEMIGGE 59
Query: 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF 187
+ G I FT TE+ L S + ++ +I T EH S +Q + + G +
Sbjct: 60 EQG-IYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQ-GYTVTE 117
Query: 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
+ ++ L L+ ++ T L I H ++ + +I PI EI D Q
Sbjct: 118 IPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQ 177
Query: 248 SVPHMVVDVQGLDADFLVASSHKMCGPTGIG 278
+ + +DV + D L S+HK+ GP G+G
Sbjct: 178 TFGKLPIDVFEMGIDSLSVSAHKIYGPKGVG 208
|
Length = 381 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-14
Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 14/177 (7%)
Query: 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIV 172
E +K+A + + VF + T A + L GDEVI+ H S
Sbjct: 2 LEELEEKLARLLQPGNDK-AVFVPSGTGANEAALLAL----LGPGDEVIVDANGHGSRYW 56
Query: 173 PWQLVAQKTGANLKFLNLNDDESPDLD---KLKEMLSRKTKLVVIHHISNMLASILPIEE 229
+ A+ GA + ++D LD + L+VI + ++P++E
Sbjct: 57 ---VAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKE 113
Query: 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLD---ADFLVASSHKMCGPTGIGFLFGK 283
I + + G +LVDA + + AD + S HK G G G + K
Sbjct: 114 IRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|234554 TIGR04343, egtE_PLP_lyase, ergothioneine biosynthesis PLP-dependent enzyme EgtE | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 71/307 (23%), Positives = 124/307 (40%), Gaps = 27/307 (8%)
Query: 69 VYLDNAATSQKPIAVLKALQNY--YEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA 126
V+LD+AA S++ A L A+ + +EA G + + A + R VAA
Sbjct: 15 VHLDSAACSRQSFATLDAVAQHARHEA-----EVGGYVAAEAAAPVLDAGRAAVAALTGM 69
Query: 127 SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186
+ ++VFT + A++L+ SW + V E+ + + G ++
Sbjct: 70 PAA-DVVFTTGSNHALDLLLGSWPGPS----RTVACLPGEYGPNL----AIMAAHGFEVR 120
Query: 187 FLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDA 245
L ++DD D+D L LV + + + ++ P + G ++VDA
Sbjct: 121 ELPVDDDGRLDVDGAASALRADPPALVHLTVVGSHRGTVQPAAAVAELCRAAGVPLVVDA 180
Query: 246 CQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVF 304
Q++ H +D + AD +SS K + GP G+G L + +LL + P L +
Sbjct: 181 AQALGH--LDC-AVGADAYYSSSRKWLAGPRGVGVLAVRPELLERLAPRLPPPDWPEASP 237
Query: 305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364
L + R E G I +G A+ G + A E+ + L +P
Sbjct: 238 LAVA------QRLEHGEANIAARVGFSVAVGEHLAAGPAAVRARLAEVGRAARRALADVP 291
Query: 365 NIRIYGP 371
R+ P
Sbjct: 292 GWRVVEP 298
|
Members of this protein family are the pyridoxal phosphate-dependent enzyme EgtE, which catalyzes the final step in the biosynthesis of ergothioneine [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 370 |
| >gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 9/110 (8%)
Query: 188 LNLNDDESPDLDKLKEMLSRK---TKLVVIHHISNMLASIL-PIEEIVHWSHDVGAKVLV 243
LN ++ E PDL++++E L+ T + +HH + IL P+E I + GA ++V
Sbjct: 103 LNFSEYEPPDLNRIEEALAADPDITHVATVHHETT--TGILNPLEAIAKVARSHGAVLIV 160
Query: 244 DACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLLSAMP 291
DA S + +D++ LD D L+AS++K C G G GF+ + DLL A
Sbjct: 161 DAMSSFGAIPIDIEELDVDALIASANK-CLEGVPGFGFVIARRDLLEASA 209
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level TIGR02326. The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355 |
| >gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 70/299 (23%), Positives = 116/299 (38%), Gaps = 20/299 (6%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARK---KVAAFIN 125
+YLD + +P AV LQ A + I + D ++L + K+A I
Sbjct: 33 IYLDGNSLGARPRAVTARLQQ--VATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIG 90
Query: 126 ASDSGEIVFTKNATEAIN--LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA 183
A +GE+V T + + L A + G VI V+E + P L + A
Sbjct: 91 AR-AGEVVVTDTTSINLFKVLAAAL----RPQEGRRVI--VSEGDN--FPTDLYIAEGLA 141
Query: 184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV 243
+L + + + L+E ++ +V++ H++ +L + I +H GA V
Sbjct: 142 DLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGW 201
Query: 244 DACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLLSAMPPFLGGGEMIS 301
D S + VD+ ADF + S+K GP LF P L G +
Sbjct: 202 DLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHA 261
Query: 302 DVFLDHSTFADPP--SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYE 358
F +A P RF GT + L A+D + + + ++ + L Y E
Sbjct: 262 RPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIE 320
|
Length = 407 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 117 RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVIL---TVAEHHSAIVP 173
++ VA+ I+ T AT A LV Y+ ++ GD VI T + + +P
Sbjct: 68 KEAVASLYQNVKPENILQTNGATGANFLVLYAL----VEPGDHVISVYPTYQQLYD--IP 121
Query: 174 WQLVAQKTGANLKFLNLNDDE--SPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IE 228
L GA + + L ++ PDLD+L+ ++ TKL+ I++ +N +++ +E
Sbjct: 122 ESL-----GAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLE 176
Query: 229 EIVHWSHDVGAKVLVD 244
EIV + V A VL D
Sbjct: 177 EIVEIARSVDAYVLSD 192
|
Length = 373 |
| >gnl|CDD|236469 PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 23/172 (13%)
Query: 118 KKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV 177
+ +A F+ E T A E V +S K GD V+L H+++ V
Sbjct: 70 EDLAEFLGMD---EARVTHGAREGKFAVMHSLC----KKGDYVVLDGLAHYTSYV----A 118
Query: 178 AQKTGANLKFLNLNDDES----PD-----LDKLKEMLSRKTKLVVIHHISNMLASILPIE 228
A++ G N++ + P+ ++++KE + L ++ H+ ++ +
Sbjct: 119 AERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAK 178
Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-M--CGPTGI 277
++ +H+ G L++ +V M VD + L ADF+V S HK M P+G+
Sbjct: 179 KVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGV 230
|
Length = 387 |
| >gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 177 VAQKTGANLKFLNLNDDESPDLDKLKEML---SRKTKLVVIHHISNMLASIL-PIEEIVH 232
+A+ G L+ +DE PD +++ L R T + ++H IL P++EI
Sbjct: 98 IAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVH--CETTTGILNPLDEIAA 155
Query: 233 WSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLLSA 289
+ G +++VDA S + +D+ L D L++S++K C G G GF+ + L A
Sbjct: 156 VAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANK-CIEGVPGFGFVIARRSELEA 213
|
Length = 368 |
| >gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 79/342 (23%), Positives = 134/342 (39%), Gaps = 59/342 (17%)
Query: 66 KKLVYLDNAATSQKPIAVLKA---LQNYYEAYNSNVHRGIHF---LSAKATDEYELARKK 119
K +VYLD+A A L + L+ ++SNV+ H S +++D E AR++
Sbjct: 33 KGVVYLDHAG------ATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQ 86
Query: 120 VAAFINASDSGE--IVFTKNATEAINLV--AYSWGLSNLKSGDEVILTVAEHHSAIVPWQ 175
V + NA + VFT AT A+ LV + W S T+ H+S + +
Sbjct: 87 VLEYFNAP-PSDYACVFTSGATAALKLVGETFPW-----SSESHFCYTLENHNSVLGIRE 140
Query: 176 LVAQKTGANL-----KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI----LP 226
+K A + + N + + L R+ + + + P
Sbjct: 141 YALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRR-NTSKLQKREDDGEAYNLFAFP 199
Query: 227 IE----------EIVHW----SHDVGAK-----VLVDACQSVPHMVVDVQGLDADFLVAS 267
E ++V H +K VL+DA + D+ ADF+V S
Sbjct: 200 SECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVS 259
Query: 268 SHKMCG-PTGIGFLFGKSDLLSAM-PPFLGGGEM---ISDVFLDHSTFADP-PSRFEAGT 321
+K+ G PTG+G L + D + + GGG + I+D+ D + RFE GT
Sbjct: 260 FYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADI--DFVKRRERVEQRFEDGT 317
Query: 322 PAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363
+ L L+ + + I + L Y+ +L ++
Sbjct: 318 ISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNL 359
|
Length = 805 |
| >gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-07
Identities = 42/203 (20%), Positives = 82/203 (40%), Gaps = 13/203 (6%)
Query: 177 VAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT--KLVVIHHISNMLASILPIEEIVHWS 234
+A++ GA + L + E+ D ++++E L + K V + H + P++EI +
Sbjct: 98 IAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAA 157
Query: 235 HDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLLSAMPP 292
+ GA ++VDA S+ + V D + S K P G+ F+ L A+
Sbjct: 158 KEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQK-ALGAPPGLAFVAVSERALEAI-- 214
Query: 293 FLGGGEMISDVFLDHSTFADPPSRFEA--GTPAIGEAIGLGAAIDYLSTIGMQKIHAYEM 350
+LD + + + TP + L A+D + G++ A
Sbjct: 215 ---EERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHR 271
Query: 351 ELAKYLYENLLSIPNIRIYGPKP 373
LA+ L L ++ + ++
Sbjct: 272 RLAEALRAGLEAL-GLELFADPE 293
|
Length = 383 |
| >gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 72/312 (23%), Positives = 120/312 (38%), Gaps = 60/312 (19%)
Query: 155 KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVI 214
K +I+ + H S ++ A+ G L++ L++D + D+ +++++ T +V
Sbjct: 104 KRTPNIIVPESAHFS----FEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVG 159
Query: 215 HHISNMLASILPIEEIVHWSHDVGAKVLVDAC---QSVPHMVVDVQGLDADFLV--ASS- 268
+ L I IEE+ + + G + VDA +P + DF + S
Sbjct: 160 IAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSI 219
Query: 269 ----HKMCG----PTGIGFLFGKSDLLSAM---PPFLGGGEMISDVFLDHSTFADPPSRF 317
HKM G P G G LF L + P+L + +T
Sbjct: 220 TIDPHKM-GLSPIPAG-GILFRSKSYLKYLSVDAPYLTVKK--------QATIT------ 263
Query: 318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHV 377
GT + A A I YL G +KI A ME +YL E L I + P +
Sbjct: 264 --GTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLN--- 318
Query: 378 QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437
+ +F V++ L D+ + V S C + L R + + T+
Sbjct: 319 ----IVAFEVDDP-EEVRKKLRDRGWYV---SVTRCPKAL----------RIVVMPHVTR 360
Query: 438 EDVDEFIHALNE 449
E ++EF+ L E
Sbjct: 361 EHIEEFLEDLKE 372
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373 |
| >gnl|CDD|130873 TIGR01814, kynureninase, kynureninase | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 52/252 (20%), Positives = 81/252 (32%), Gaps = 35/252 (13%)
Query: 211 LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270
++++ + + + I +H GA V D +V ++ +D+ DF ++K
Sbjct: 174 VILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYK 233
Query: 271 MCGPTGIGFLFGKSDLLSAMPPFLGG--GEMISDVFLDHSTFADPPSRFEAGTPAIGEAI 328
F P L G G F +T P F P I
Sbjct: 234 YLNAGPGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVA 293
Query: 329 GLGAAIDYLSTIGMQKIHAYEMELAKYLYE----NLLSIPNIRIYGPKPSEHVQRAALCS 384
L ++D GM+ + + L YL E P + I P +H QR S
Sbjct: 294 ALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIIT--PRDHAQRGCQLS 351
Query: 385 FNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR-------ASLHFYNTK 437
HP + Q L + GV R A + YNT
Sbjct: 352 LT----HPVPGKAVF---------------QALIKR-GVIGDKREPSVIRVAPVPLYNTF 391
Query: 438 EDVDEFIHALNE 449
DV + ++ L E
Sbjct: 392 VDVYDAVNVLEE 403
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen [Energy metabolism, Amino acids and amines]. Length = 406 |
| >gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 27/173 (15%)
Query: 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVA 178
+A F+ E T A E V +S + GD V++ H+++ V A
Sbjct: 52 DLAEFLG---MDEARVTPGAREGKFAVMHSLC----EKGDWVVVDGLAHYTSYV----AA 100
Query: 179 QKTGANLKFLNLNDDESPD-----------LDKLKEMLSRKTKLVVIHHISNMLASILPI 227
++ G N++ + + P+ ++++K+ + L ++ H+ ++
Sbjct: 101 ERAGLNVR--EVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDA 158
Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK---MCGPTGI 277
++I H+ G +L++ +V M V + L ADF+V S HK P G+
Sbjct: 159 KKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGV 211
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. Length = 361 |
| >gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 48/220 (21%), Positives = 81/220 (36%), Gaps = 19/220 (8%)
Query: 150 GLSNL-KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK 208
LSNL + GD+V++ V W +A++ GA++ + E+ +++ E L +
Sbjct: 66 ALSNLLEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQH 123
Query: 209 T-KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAS 267
K V + H + P+E I + A ++VDA S+ + D
Sbjct: 124 DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTG 183
Query: 268 SHKMCG-PTGIGFLF----GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEA--G 320
S K G P G+G + + P + D +
Sbjct: 184 SQKALGAPPGLGPIAFSERALERIKKKTKPKGF--------YFDLLLLLKYWGEGYSYPH 235
Query: 321 TPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360
TP + L A+D + G++ A LAK L E L
Sbjct: 236 TPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGL 275
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356 |
| >gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 191 NDDESPDLDKLKEMLSRK---TKLVVIHHISNMLASIL-PIEEIVHWSHDVGAKVLVDAC 246
+ E PD+ +++ +L+ T + ++H IL PIE + +H G +VDA
Sbjct: 110 GEVEPPDVVEVEAILAADPAITHIALVH--CETTTGILNPIEAVAKLAHRHGKVTIVDAM 167
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLLSA 289
S + +D+ L D+L++S++K C G G GF+ + L+A
Sbjct: 168 SSFGGIPIDIAELHIDYLISSANK-CIQGVPGFGFVIARQAELAA 211
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli [Central intermediary metabolism, Phosphorus compounds]. Length = 363 |
| >gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL---VAQKTGANLKFLN 189
V T AI+LV + LK GD L VA H ++L +A++ + F++
Sbjct: 71 VLTNTGMSAIHLVTTVF----LKPGD---LLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123
Query: 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
D+++ L+ L+ K KLV++ SN L ++ I +I H + + GA +VD
Sbjct: 124 QGDEQA-----LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLS 178
Query: 250 PHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288
P + + L AD ++ S K +L G SD+++
Sbjct: 179 PALQNPL-ALGADLVLHSCTK--------YLNGHSDVVA 208
|
Length = 386 |
| >gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 27/173 (15%)
Query: 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVA 178
+A F+ E T A E V ++ K GD V+L H+++ V A
Sbjct: 59 DLAEFLG---MDEARVTHGAREGKFAVMHALC----KEGDWVVLDGLAHYTSYV----AA 107
Query: 179 QKTGANLKFLNLNDDESPD-----------LDKLKEMLSRKTKLVVIHHISNMLASILPI 227
++ G N+K + P+ ++++++ + L ++ H+ ++
Sbjct: 108 ERAGLNVK--EVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDA 165
Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK---MCGPTGI 277
++ + G +L++ +V M V + + ADF+V S HK GP G+
Sbjct: 166 GKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGV 218
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. Length = 370 |
| >gnl|CDD|224028 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 55/276 (19%), Positives = 109/276 (39%), Gaps = 51/276 (18%)
Query: 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVA 178
+A F+ E+ T A EA V ++ K GD V++ H++ V A
Sbjct: 69 DLAEFLG---MDEVRVTAGAREAKFAVMHALC----KEGDWVVVDSLAHYTTYV----AA 117
Query: 179 QKTGANLKFLNLNDDESPD-----------LDKLKEMLSRKTKLVVIHHISNMLASILPI 227
++ G N+ + + P+ ++++K+ L ++ H+ ++
Sbjct: 118 ERAGLNVA--EVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADA 175
Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK---MCGPTGIGFLFGKS 284
+++ + G +L++ +V M V + + ADF+V S HK P G+
Sbjct: 176 KKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGV------- 228
Query: 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEA-GTPAIGEAI-GLGAAIDYLSTIGM 342
L E +++ L S A P E G G I L A+ ++ +
Sbjct: 229 ---------LAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHV----V 275
Query: 343 QKIHAY--EMELAKYLYENLLSIPNIRIYGPKPSEH 376
+++ + E+E A++ L I ++ G +P H
Sbjct: 276 ERVKRWDEEVEKARWFVAELEKIGGVKQLGERPKNH 311
|
Length = 382 |
| >gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 6e-05
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 18/136 (13%)
Query: 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV 213
LK+GD V+ T + ++ V + G + F++ +D LD L+ + TK V
Sbjct: 88 LKAGDHVVATDDLYGGTYRLFEKVLPRFGIEVTFVDPSD-----LDALEAAIKPNTKAVF 142
Query: 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD--ADFLVASSHKM 271
+ +N L ++ IE I + GA V+VD + P + L+ AD +V S+ K
Sbjct: 143 LETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFASP---YLQRPLELGADIVVHSATK- 198
Query: 272 CGPTGIGFLFGKSDLL 287
++ G SD++
Sbjct: 199 -------YIGGHSDVV 207
|
This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 62/359 (17%), Positives = 124/359 (34%), Gaps = 76/359 (21%)
Query: 117 RKKVAAFINASDSG-----EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
R+ +A ++ EIV T A EA++L+ + L GDEV++
Sbjct: 42 REAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRAL----LNPGDEVLV--------P 89
Query: 172 VP----WQLVAQKTGANLKFLNLNDDES--PDLDKLKEMLSRKTKLVVIHHISNMLASIL 225
P ++ A+ GA + + L+++ DL+ L+ + KTKL+ +++ +N ++L
Sbjct: 90 DPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVL 149
Query: 226 P---IEEIVHWSHDVGAKVLVDAC----QSVPHMVVDVQGLDADFLVASSH---KMCGPT 275
+EE+ + G ++ D + LDA V K G
Sbjct: 150 SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLP 209
Query: 276 G--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA 333
G IG+L + L +G + +A AA
Sbjct: 210 GLRIGYLIAPPEELLER-------------------LKKLLPYTTSGPSTLSQA----AA 246
Query: 334 IDYLSTIG--MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSF-NVENI 390
L ++++ L E L + + + P + ++
Sbjct: 247 AAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPS-------GGFFLWLDLPEG 299
Query: 391 HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449
+ L + GV R G + ++ ++ + +E+++E + L E
Sbjct: 300 DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFA--------TPEEELEEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV 213
LK+GD V+ + + ++ + K G + F++ D + L+ + +TKLV
Sbjct: 76 LKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDP-----DDPEALEAAIKPETKLVY 130
Query: 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVD 244
+ +N ++ IE I +H+ GA ++VD
Sbjct: 131 VESPTNPTLKVVDIEAIAELAHEHGALLVVD 161
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 28/145 (19%)
Query: 80 PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVF 134
P AV +AL+ E + +H ++ Y R+ +A +N + IV
Sbjct: 48 PAAVKEALRELAEEEDPGLHG---YMPNAG---YPEVREAIAESLNRRFGTPLTADHIVM 101
Query: 135 TKNATEAINLVAYSWGLSNLKS----GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190
T A A+N+ LK+ GDEVI A + V ++ G L +
Sbjct: 102 TCGAAGALNVA--------LKAILNPGDEVI-VFAPY---FVEYRFYVDNHGGKLVVVPT 149
Query: 191 NDDE-SPDLDKLKEMLSRKTKLVVI 214
+ D PDLD L+ ++ KTK V+I
Sbjct: 150 DTDTFQPDLDALEAAITPKTKAVII 174
|
Length = 394 |
| >gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV---AQKTGANLKFLN 189
V T T A+NL W +S L D++I VA H ++L A K ++F++
Sbjct: 72 VVTNCGTSALNL----W-VSALLGPDDLI--VAPHDCYGGTYRLFNTRANKGDFKVQFVD 124
Query: 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
+D + L L++K KL+++ SN L ++ I E+ + VGA V VD
Sbjct: 125 QSDAAA-----LDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLT 179
Query: 250 PHMVVDVQGLDADFLVASSHK 270
P + ++ L ADF++ S+ K
Sbjct: 180 PVLQKPLE-LGADFVIHSTTK 199
|
Length = 388 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 59/275 (21%), Positives = 95/275 (34%), Gaps = 46/275 (16%)
Query: 124 INASDSGEIVFTKNATEAINL---------VAYSWGLSNLKSGDEVILTVAEHHSAIVPW 174
+ A + FT TEA L + S G I+ H + +
Sbjct: 114 LGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFS---F 170
Query: 175 QLVAQKTGANLKFLNLNDDE-SPDLDKLKEMLSRKTKLVVIHHISNM----LASILPIEE 229
+ A+ G L+ + + D+D L+E + T V+ + SI IEE
Sbjct: 171 EKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVV--VGTAGTTDTGSIDDIEE 228
Query: 230 IVHWSHDVGAKVLVDAC---QSVPHMVVDVQGLD----ADFLVASSHKMCG-PTGIG-FL 280
+ + + G + VDA +P + D + D + HK P G G L
Sbjct: 229 LADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVL 288
Query: 281 F-GKSDLLSAM---PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336
F + L + +L GG F SR A+ L A +
Sbjct: 289 FRDEEALRRILIFADYYLPGG--------GIPNFTILGSRPGRQ------ALALYANLRR 334
Query: 337 LSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371
L G +K+ +ELA+YL E L + + +
Sbjct: 335 LGREGYRKLLDRTLELARYLAEELEKLGDFELVNE 369
|
Length = 460 |
| >gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 41/233 (17%)
Query: 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLV 212
LK+GD V+L + ++ + QK G + F++ DDE L+ + TKLV
Sbjct: 99 LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDE-----ALEAAIKEPNTKLV 153
Query: 213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD--ADFLVASSHK 270
+ SN L + I I + GA V+VD + P V + L+ AD +V S+ K
Sbjct: 154 FLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP---VLQRPLELGADIVVHSATK 210
Query: 271 MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH--STFADPPSRFEAGTPAIGEAI 328
+L G SD+L + L E + ++ + S F+A G
Sbjct: 211 --------YLGGHSDVLGGV--VLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRG--- 257
Query: 329 GLGAAIDYLSTIG--MQKIHAYEMELAKYLYENLLSIPNI-RIYGPKPSEHVQ 378
L T+ M++ + +++A++L ++ P + ++Y P H
Sbjct: 258 --------LRTLALRMERHNENALKIAEFLADH----PKVKKVYYPGLPSHPG 298
|
Length = 396 |
| >gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 30/162 (18%), Positives = 63/162 (38%), Gaps = 23/162 (14%)
Query: 92 EAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGL 151
A V + +E + A ++ + V + T A++L + +
Sbjct: 18 LAAVQEVLKSGWLTGGPFVRRFE---QAFAEYLGVKYA---VAVSSGTAALHLALLALAI 71
Query: 152 SNLKSGDEVI---LTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR 207
GDEVI T +A++ GA F++++ D + D D ++ ++
Sbjct: 72 ---GPGDEVIVPSFTFVATANAVL-------LVGAKPVFVDIDPDTLNIDPDLIEAAITP 121
Query: 208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
+TK ++ H++ + I + + G V+ DA Q+
Sbjct: 122 RTKAIIPVHLAGQPCDMDAIMAL---AKRHGLPVIEDAAQAH 160
|
Length = 374 |
| >gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 24/158 (15%)
Query: 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV---AQKTGANLKFLN 189
V T AI+L + L D L VA H ++L+ A+K + F++
Sbjct: 70 VVTNTGMSAIHL----VTTALLGPDD---LLVAPHDCYGGTYRLLNALAKKGCFRVLFVD 122
Query: 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
D+++ L+ L++K KLV+I SN L ++ I +I H + VGA V+VD
Sbjct: 123 QGDEQA-----LRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLS 177
Query: 250 PHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 287
P + + L AD ++ S K +L G SD++
Sbjct: 178 P-ALQNPLALGADLVLHSCTK--------YLNGHSDVI 206
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 117 RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL 176
R +A D+ ++ T ++EAI LV + L+ GDEV++ +HS
Sbjct: 57 RAAIADRWRGGDAHVVMTTHGSSEAIYLVLTAL----LRPGDEVVVVDPAYHSLSH---- 108
Query: 177 VAQKTGANLKFLNL--NDDESPDLDKLKEMLSRKTKLVVIHHISNML-ASILPIE--EIV 231
+A TG ++ L PDLD L+ +L+ +T+ VV++ N AS+ P E E++
Sbjct: 109 LAVATGCEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHNPTGASVTPRELDELL 168
Query: 232 HWSHDVGAKVLVDA 245
+ GA +L D
Sbjct: 169 ERAARSGAVLLWDN 182
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 7e-04
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV 213
L +GD V+ + + S V + + G F++ D L + L TK V
Sbjct: 90 LGAGDHVVASRSLFGSCFVVCSEILPRFGVQTVFVDGTD-----LSAWEAALKPNTKAVF 144
Query: 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD--ADFLVASSHK 270
+ SN L ++ I + +H GAKV+VD + P + Q L AD +V S+ K
Sbjct: 145 VETPSNPLQELVDIAAVAELAHAAGAKVVVDNVFATP---LLQQPLKLGADVVVYSATK 200
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381 |
| >gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML 205
A + LK+GD +I + + K G + F+N+ E +K +
Sbjct: 89 ATLLTI--LKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEE-----VKAHI 141
Query: 206 SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLV 265
TK+V +N ++ +E + +H G KV+VD + P M+ + L D +V
Sbjct: 142 KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATP-MLTNPVALGVDVVV 200
Query: 266 ASSHKMCGPTG---IGFLFGKSDLL 287
S+ K G G G + GK++LL
Sbjct: 201 HSATKYIGGHGDVVAGLICGKAELL 225
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391 |
| >gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 177 VAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD 236
V ++G + ++ D LDK+K L KTKLV++ +N L I+ I +I +H
Sbjct: 105 VVPRSGVVVVHVDTTD-----LDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHA 159
Query: 237 VGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 287
A V+VD P + ++ L AD + S+ K FL G SD++
Sbjct: 160 QNALVVVDNTMMSPLLCNPLE-LGADIVYHSATK--------FLAGHSDVM 201
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVIL---TVAEH 167
+Y R +A + D ++ + E I L+ ++ ++ GD V++ T + +
Sbjct: 57 PDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF----VEPGDTVLIPEPTFSMY 112
Query: 168 HSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
++ AQ GA + + L + DLD + + KTKLV + + +N ++LP
Sbjct: 113 -------EIAAQLAGAEVVKVPL-KEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPR 164
Query: 228 EEIVHWSHDVGAKVLV 243
EE+ + LV
Sbjct: 165 EELRALLEALPEGGLV 180
|
Length = 356 |
| >gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML-SRKT 209
S LK+GD V+L + + + + + + +K G + P + + E + +T
Sbjct: 86 FSLLKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLA------YPSTEDIIEAIKEGRT 138
Query: 210 KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269
KLV I ++N ++ + E+ + ++GA ++VD + P + ++ ADF+V S
Sbjct: 139 KLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLR-HGADFVVHSLT 197
Query: 270 K 270
K
Sbjct: 198 K 198
|
Length = 385 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 40/200 (20%), Positives = 85/200 (42%), Gaps = 38/200 (19%)
Query: 116 ARKKVAAF------INASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTV---AE 166
R+ +A ++ EI+ T A EA+ L L+ L GDEV++
Sbjct: 70 LREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAF----LALLNPGDEVLIPDPGYPS 125
Query: 167 HHSAIVPWQLVAQKTGANLKFLNLNDDE---SPDLDKLKEMLSRKTKLVVIHHISNMLAS 223
+ +A+ +A G + L+++E PDL+ L+ ++ KTK ++++ +N +
Sbjct: 126 YEAAV----KLA---GGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGA 178
Query: 224 ILP---IEEIVHWSHDVGAKVLVDAC-------QSVPHMVVDVQGLDADFLVASS----H 269
+ ++ IV + + ++ D + ++++ G + +S +
Sbjct: 179 VYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTY 238
Query: 270 KMCGPTGIGFLFGKSDLLSA 289
M G IG++ G + L A
Sbjct: 239 GMTG-WRIGWVVGPPEELIA 257
|
Length = 393 |
| >gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 25/157 (15%)
Query: 98 VHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG 157
V E+E K A ++ V + T A+ +A + G
Sbjct: 8 VLDSGWLTLGPKVREFE---KAFAEYLGV---KYAVAVSSGTAAL-HLALR--ALGIGPG 58
Query: 158 DEVILT----VAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSRKTKLV 212
DEVI+ VA +A L GA F++++ D + D + ++ ++ +TK +
Sbjct: 59 DEVIVPSFTFVA---TANAILLL-----GATPVFVDIDPDTYNIDPELIEAAITPRTKAI 110
Query: 213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
+ H+ A + I I H + V+ DA Q++
Sbjct: 111 IPVHLYGNPADMDAIMAIAK-RHGL--PVIEDAAQAL 144
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD. Length = 352 |
| >gnl|CDD|178031 PLN02409, PLN02409, serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 54/226 (23%), Positives = 88/226 (38%), Gaps = 41/226 (18%)
Query: 151 LSNLKS-GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML---- 205
L+N S GD+V+ S + W Q+ ++ + + DLD LK L
Sbjct: 77 LTNTLSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDT 134
Query: 206 SRKTKLVVIHH------ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL 259
+ K K V + H ++N LA + + + A +LVD S+ + +
Sbjct: 135 NHKIKAVCVVHNETSTGVTNDLAGVRKLLD----CAQHPALLLVDGVSSIGALDFRMDEW 190
Query: 260 DADFLVASSHK-MCGPTGIGFLFGKSDLLSAM-----PPFLGGGEMISDVFLDHSTFADP 313
D + S K + PTG+G + L A P VF D +AD
Sbjct: 191 GVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPR----------VFFD---WADY 237
Query: 314 PSRFEAG-----TPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAK 354
++ G TP+I GL AA+D + G++ + A L +
Sbjct: 238 LKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGE 283
|
Length = 401 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 100.0 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 100.0 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 100.0 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 100.0 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 100.0 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 100.0 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 100.0 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 100.0 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 100.0 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 100.0 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 100.0 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 100.0 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 100.0 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 100.0 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.98 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.98 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.98 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.98 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.98 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.98 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.98 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.98 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.98 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.98 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.98 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.98 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.98 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.98 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.98 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.98 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.98 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.97 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.97 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.97 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.97 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.97 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.97 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.97 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.97 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.97 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.97 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.97 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.97 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.97 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.97 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.97 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.97 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.97 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.97 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.97 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.97 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.97 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.97 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.97 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.97 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.97 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.97 | |
| PLN02721 | 353 | threonine aldolase | 99.97 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.97 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.97 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.97 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.97 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.97 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.96 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.96 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.96 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.96 | |
| PLN02231 | 534 | alanine transaminase | 99.96 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.96 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.96 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.96 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.96 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.96 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.96 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.96 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.96 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.96 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.96 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.96 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.96 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.96 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.96 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.96 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.96 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.95 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.95 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.95 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.95 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.95 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.95 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.95 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.95 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.95 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.95 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.95 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.95 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.95 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.95 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.95 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.95 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.95 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.95 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.95 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.95 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.95 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.95 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.95 | |
| PLN02263 | 470 | serine decarboxylase | 99.95 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.95 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.95 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.95 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.95 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.94 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.94 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.94 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.94 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.94 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.94 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.94 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.94 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.94 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.94 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.94 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.94 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.94 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.94 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.94 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.94 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.94 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.94 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.94 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.94 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.94 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.94 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.94 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.94 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.93 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.93 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.93 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.93 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.93 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.93 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.93 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.93 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.93 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.93 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.93 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.93 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.93 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.93 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.93 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.93 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.93 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.93 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.93 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.93 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.93 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.93 | |
| PLN02368 | 407 | alanine transaminase | 99.93 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.92 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.92 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.92 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.92 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.92 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.92 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.92 | |
| PLN02397 | 423 | aspartate transaminase | 99.92 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.91 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.91 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.91 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.91 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.91 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.91 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.91 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.9 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.9 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.9 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.9 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.9 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.9 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.9 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.89 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.89 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.89 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.89 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.88 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.88 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.88 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.88 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.87 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.87 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.87 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.87 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.87 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.86 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.86 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.86 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.86 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.86 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.86 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.86 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.85 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.85 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.85 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.85 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.85 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.85 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.84 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.84 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.84 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.84 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.84 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.83 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.83 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.83 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.83 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.83 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.83 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.83 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.83 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.83 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.83 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.83 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.83 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.82 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.82 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.82 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.81 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.81 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.81 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.81 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.81 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.81 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.81 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.8 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.8 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.8 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.8 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.79 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.79 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.79 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.79 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.79 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.78 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.78 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.78 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.78 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.78 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.78 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.78 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.78 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.78 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.77 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.77 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.77 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.77 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.76 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.76 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.76 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.76 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.76 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.75 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.75 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.74 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.74 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.74 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 99.74 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.74 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.74 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.74 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.73 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.73 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.73 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.73 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.71 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 99.69 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.68 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.67 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.64 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.62 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.62 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.61 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.61 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.6 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.58 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.57 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.57 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.56 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 99.55 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.48 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.45 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.45 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.41 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.38 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.35 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.32 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 99.29 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.19 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.1 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.88 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 98.7 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.63 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 98.39 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.7 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 97.5 | |
| KOG0630 | 838 | consensus Predicted pyridoxal-dependent decarboxyl | 93.85 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 92.17 | |
| TIGR03573 | 343 | WbuX N-acetyl sugar amidotransferase. This enzyme | 80.75 |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-63 Score=473.66 Aligned_cols=397 Identities=55% Similarity=0.892 Sum_probs=372.5
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 128 (458)
..+|++||.+.+.. +++++|||++..++.|..+++++.+++..++.|++++.+..+....+.++++|+.+|+++|+++
T Consensus 6 ~~~r~~fp~l~~~~--~~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~ 83 (405)
T COG0520 6 AAVRADFPALKREV--GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADS 83 (405)
T ss_pred HHHHhhCHHHhhcc--CCCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34788999986544 3578999999999999999999999999999999999999988899999999999999999996
Q ss_pred CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC
Q 012718 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK 208 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 208 (458)
.++|+||.|+|+++++++.++... +++||+|++++.+|+++..+|+.++++.|++++.+|++++|.++++++++.++++
T Consensus 84 ~~eIvft~~tT~aln~va~~l~~~-~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~ 162 (405)
T COG0520 84 SDEIVFTRGTTEALNLVARGLGRS-LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPK 162 (405)
T ss_pred CCeEEEeCChhHHHHHHHHHhhhh-hcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCC
Confidence 449999999999999999998532 7899999999999999999999999999999999999989999999999999999
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEecccc
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLL 287 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~ 287 (458)
|++|.+++++|.||.+.|+++|+++||++|++++||++|+.|+.++|+.++++||+++|+|| ++||.|+|+|+++++++
T Consensus 163 Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l 242 (405)
T COG0520 163 TKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELL 242 (405)
T ss_pred ceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred ccCCCccccCcceEeeec-CCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Q 012718 288 SAMPPFLGGGEMISDVFL-DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366 (458)
Q Consensus 288 ~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~ 366 (458)
+.+.|...||+.+..... ....+...+.+|+.||+++.+.+++.++++++.+.|++.+.++.+++.+++.+.|+++|++
T Consensus 243 ~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v 322 (405)
T COG0520 243 EELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGV 322 (405)
T ss_pred hhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 999999999998887665 4466788899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHH
Q 012718 367 RIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHA 446 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~ 446 (458)
++++++. ..++++++|++++.+..++...|.++ ||.++.|++|..+.+..++.+..+|+|+++|||.+|||+|+++
T Consensus 323 ~i~g~~~---~~r~~~vsF~v~~~~~~dv~~~L~~~-gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~a 398 (405)
T COG0520 323 EIYGPPD---ADRGGIVSFNVKGIHPHDVATLLDEK-GIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEA 398 (405)
T ss_pred EEecCCc---ccCceEEEEEeCCCCHHHHHHHHHhC-CeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHH
Confidence 9999874 25689999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 012718 447 LNETVS 452 (458)
Q Consensus 447 l~~~~~ 452 (458)
|+++.+
T Consensus 399 L~~~~~ 404 (405)
T COG0520 399 LKKALA 404 (405)
T ss_pred HHHHhh
Confidence 998764
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-57 Score=445.03 Aligned_cols=417 Identities=80% Similarity=1.228 Sum_probs=364.0
Q ss_pred CCCCccchhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHH
Q 012718 40 TSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKK 119 (458)
Q Consensus 40 ~~~~~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (458)
.......+.+.+|+.||.+++... +.+++|||+++.+++|+.+.+++.+++.....+++.+.+..+....+.++++|+.
T Consensus 6 ~~~~~~~~~~~~r~~fp~~~~~~~-~~~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 84 (424)
T PLN02855 6 ASAASVSLGAETRPDFPILDQTVN-GSKLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKK 84 (424)
T ss_pred hhhhHHHHHHHHHHhCchhccccC-CCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH
Confidence 344556788889999999843221 3468999999999999999999999998877777666666666677888999999
Q ss_pred HHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHH
Q 012718 120 VAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLD 199 (458)
Q Consensus 120 la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~ 199 (458)
+++++|++++++|+||+|+|++++.++.++....+++||+|++++++|+++...|..+++..|++++.++++.++.+|++
T Consensus 85 la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~ 164 (424)
T PLN02855 85 VAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVE 164 (424)
T ss_pred HHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHH
Confidence 99999997545999999999999999987532236899999999999999988999999999999999999877789999
Q ss_pred HHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeE
Q 012718 200 KLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGF 279 (458)
Q Consensus 200 ~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~ 279 (458)
++++.+++++++|++++++|+||.++|+++|.++|+++|+++++|++|+.|..++++.++++|++++|+||++||.|+|+
T Consensus 165 ~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~ 244 (424)
T PLN02855 165 QLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGF 244 (424)
T ss_pred HHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred EEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 280 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++++++.++.++++..||......+.....+...+.+|+.||+++..++++.++++++.+.|++++.+++.++++++.+.
T Consensus 245 l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~ 324 (424)
T PLN02855 245 LWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEK 324 (424)
T ss_pred EEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999899888777766544443444455567899999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
|+++++++++.+.......+.++++|.+++.+..++.+.|.+++||.++.|++|..+.+..+|.++++|+|+++|+|++|
T Consensus 325 L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~d 404 (424)
T PLN02855 325 LSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEE 404 (424)
T ss_pred HhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHH
Confidence 99999999997643111245779999999888889999998777999999999998887777888999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 012718 440 VDEFIHALNETVSFFNVF 457 (458)
Q Consensus 440 i~~l~~~l~~~~~~~~~~ 457 (458)
|+++++.|+++++.+++.
T Consensus 405 i~~l~~~l~~~~~~~~~~ 422 (424)
T PLN02855 405 VDAFIHALKDTIAFFSSF 422 (424)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999877653
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=430.43 Aligned_cols=396 Identities=47% Similarity=0.811 Sum_probs=347.8
Q ss_pred hhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC
Q 012718 50 ITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS 129 (458)
Q Consensus 50 ~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~ 129 (458)
.+|++||.+.+... +.+++|||+++.+++|+.+.+++.+++.....|++.+.+..+....+.++++|+.+|+++|+.++
T Consensus 7 ~~r~~fp~~~~~~~-~~~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~ 85 (406)
T PRK09295 7 KVRADFPVLSREVN-GLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSA 85 (406)
T ss_pred HHHhhCccccCcCC-CCceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence 46889999843211 24689999999999999999999999987766776667777777888999999999999998533
Q ss_pred CcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc
Q 012718 130 GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT 209 (458)
Q Consensus 130 ~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 209 (458)
++|+||+|+|++++.++.++....+++||+|++++++|+++..+|..+++..|++++.++.++++.+|++++++.+++++
T Consensus 86 ~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t 165 (406)
T PRK09295 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERT 165 (406)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCCc
Confidence 49999999999999999876322368999999999999999889999889999999999998888899999999999999
Q ss_pred eEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEecccccc
Q 012718 210 KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~ 289 (458)
++|++++++|+||.+.|+++|.++||++|+++++|++|+.|..++++.++++|++++|+||++||.|+|++++++++++.
T Consensus 166 ~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~ 245 (406)
T PRK09295 166 RLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQE 245 (406)
T ss_pred EEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCCcEEEEEchHhHhh
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999998888
Q ss_pred CCCccccCcceEeeec-CCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 290 MPPFLGGGEMISDVFL-DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
++++..|++....... ....+...+.+|+.||+++..++++.++++++.+.|++++.++.+++.+++.+.|.+++++++
T Consensus 246 ~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~ 325 (406)
T PRK09295 246 MPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTL 325 (406)
T ss_pred CCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 8887666654333221 223455667899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
..+. .+.+++.|.+++.+..++.+.|.++ ||.++.|++|..+....+|.++++|+|+++|||++|||++++.|+
T Consensus 326 ~~~~-----~~~~iv~~~~~~~~~~~~~~~L~~~-gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~ 399 (406)
T PRK09295 326 YGPQ-----NRLGVIAFNLGKHHAYDVGSFLDNY-GIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQ 399 (406)
T ss_pred eCCC-----CCceEEEEEECCcCHHHHHHHHHhC-CeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 8764 2468999999887788899988877 999999999998877778878899999999999999999999999
Q ss_pred HHHH
Q 012718 449 ETVS 452 (458)
Q Consensus 449 ~~~~ 452 (458)
++.+
T Consensus 400 ~i~~ 403 (406)
T PRK09295 400 RIHR 403 (406)
T ss_pred HHHH
Confidence 8754
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-55 Score=425.65 Aligned_cols=393 Identities=42% Similarity=0.704 Sum_probs=343.4
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 128 (458)
+.+|++||.+ +++++|||+++.+++|+.+.+++.+++.....+++.+.+..+....+.++++|+.+++++|+++
T Consensus 4 ~~~r~~fp~l------~~~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~ 77 (398)
T TIGR03392 4 AQFRQQFPAL------QDGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPD 77 (398)
T ss_pred hHHHHhCCcc------CCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4578999977 3578999999999999999999999998777777666666666778889999999999999964
Q ss_pred CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC
Q 012718 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK 208 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 208 (458)
.++|++|+|+|+++++++.++....+++||+|++++++|+++..+|..+++..|++++.++.+.++.+|++.+++.++++
T Consensus 78 ~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~ 157 (398)
T TIGR03392 78 AENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPR 157 (398)
T ss_pred CCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccC
Confidence 34999999999999999998732236899999999999999888888888999999999999888888999999999999
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccc
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~ 288 (458)
+++|++++++|+||.+.|+++|.++|+++|+++++|++|+.+..++++.++++|++++|+||++||.|+|+++++++.++
T Consensus 158 t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 237 (398)
T TIGR03392 158 TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLE 237 (398)
T ss_pred ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCceEEEEEcHHHHh
Confidence 99999999999999999999999999999999999999999998888888889999999999999999999999999888
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+.++..|+............+...+.+|+.||+++..++++.++++++.+.|++++.++..++++++.+.|++++++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~ 317 (398)
T TIGR03392 238 AMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRS 317 (398)
T ss_pred hCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 88876644433222111222334566899999999999999999999999999999999999999999999999999987
Q ss_pred eCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
..++. .++++|.+++.+..++.+.|.++ ||.++.|..|..+....+|.++++|+|+++|+|.+||+++++.|+
T Consensus 318 ~~~~~------~~i~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~ 390 (398)
T TIGR03392 318 FRCPG------SSLLAFDFAGVHHSDLAALLAES-GIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVG 390 (398)
T ss_pred eCCCC------CcEEEEEeCCcCHHHHHHHHHhC-CEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHH
Confidence 75431 57899998888888999999887 999999999988777677778899999999999999999999999
Q ss_pred HHHHhh
Q 012718 449 ETVSFF 454 (458)
Q Consensus 449 ~~~~~~ 454 (458)
++++++
T Consensus 391 ~~~~~~ 396 (398)
T TIGR03392 391 AALELL 396 (398)
T ss_pred HHHHHh
Confidence 988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=423.90 Aligned_cols=393 Identities=41% Similarity=0.694 Sum_probs=345.6
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 128 (458)
+.+|++||.+ +++++|||+++.+++|+.+.+++.+++.....+++++.+..+..+.+.++++|+.+++++|+++
T Consensus 7 ~~~r~~fp~l------~~~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~ 80 (401)
T PRK10874 7 AQFRAQFPAL------QDAGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPD 80 (401)
T ss_pred HHHHHhCCCc------CCceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5579999977 3578999999999999999999999998887787767777777888999999999999999943
Q ss_pred CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC
Q 012718 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK 208 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 208 (458)
.++|++|+|+|+++++++.++....+++||+|++++++|+++..+|..+++..|++++.++.+.++.+|++++++.++++
T Consensus 81 ~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~ 160 (401)
T PRK10874 81 AKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPR 160 (401)
T ss_pred CCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcC
Confidence 34999999999999999998732236899999999999999888899988999999999999888889999999999999
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccc
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~ 288 (458)
+++|++++++|+||.+.|+++|.++|+++|+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++.++
T Consensus 161 t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 240 (401)
T PRK10874 161 TRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLE 240 (401)
T ss_pred cEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCccEEEEEchHHHh
Confidence 99999999999999999999999999999999999999999999888888899999999999999999999999999998
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+.++..++................+.+|+.||+++..++++.++++++.+.|+.++.++++++++++.+.|++++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~ 320 (401)
T PRK10874 241 AMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRS 320 (401)
T ss_pred cCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 88877655443222211122233456899999999999999999999999999999999999999999999999999987
Q ss_pred eCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
..++. .++++|++++.+..++.+.|.++ ||.+++|.+|..+....+|..+++|+|++.|+|++||+++++.|+
T Consensus 321 ~~~~~------~~i~~~~~~~~~~~~~~~~L~~~-gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~ 393 (401)
T PRK10874 321 FRCQD------SSLLAFDFAGVHHSDLVTLLAEY-GIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVD 393 (401)
T ss_pred eCCCC------CcEEEEEECCcCHHHHHHHHHHC-CcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHH
Confidence 76542 56899999887788999999887 999999999988766677778999999999999999999999999
Q ss_pred HHHHhh
Q 012718 449 ETVSFF 454 (458)
Q Consensus 449 ~~~~~~ 454 (458)
++++++
T Consensus 394 ~~~~~~ 399 (401)
T PRK10874 394 RALELL 399 (401)
T ss_pred HHHHHh
Confidence 988764
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=416.59 Aligned_cols=401 Identities=58% Similarity=0.978 Sum_probs=349.1
Q ss_pred hhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC
Q 012718 50 ITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS 129 (458)
Q Consensus 50 ~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~ 129 (458)
.+|++||.++...+ +++++|||+++.+++|+.+.+++.+++.....+++.+.+..+....+.++++|+.+++++|+++.
T Consensus 2 ~~~~~f~~~~~~~~-~~~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~ 80 (403)
T TIGR01979 2 NIRADFPILKRKIN-GKPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASD 80 (403)
T ss_pred chhhhCchhcCCCC-CCceEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 56889999854333 46789999999999999999999999887777776655555666778899999999999999844
Q ss_pred CcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc
Q 012718 130 GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT 209 (458)
Q Consensus 130 ~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 209 (458)
++|++|+|+|+++++++.++....+++||+|++++++|+++...|..+++..|++++.+++++++.+|++++++.+++++
T Consensus 81 ~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~ 160 (403)
T TIGR01979 81 EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKT 160 (403)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCC
Confidence 48999999999999999876432367899999999999999888888888899999999999888899999999999999
Q ss_pred eEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEecccccc
Q 012718 210 KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~ 289 (458)
++|++++++|+||.+.|+++|.++|+++|+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++.++.
T Consensus 161 ~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~ 240 (403)
T TIGR01979 161 KLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQ 240 (403)
T ss_pred eEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCCceEEEEchHHHhc
Confidence 99999999999999999999999999999999999999999998888888999999999999999999999999998888
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
+.++..||............+...+.+|+.||++...++++..+++++.+.|++++.+++.++++++.+.|+++++++++
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~ 320 (403)
T TIGR01979 241 MPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIY 320 (403)
T ss_pred CCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 88887776654332222234555668899999999999999999999999899999999999999999999999899998
Q ss_pred CCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.+... ..++++++|.+++.+..++.+.|.++ ||.++.|++|..+....++.++++|||+++|+|++||++++++|++
T Consensus 321 ~~~~~--~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~ 397 (403)
T TIGR01979 321 GPRDA--EDRGGIISFNVEGVHPHDVGTILDEE-GIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKK 397 (403)
T ss_pred CCCCc--cccCceEEEEeCCcCHHHHHHHHhhC-CEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHH
Confidence 76421 24577999999877788899999888 9999999999887776677788999999999999999999999999
Q ss_pred HHHhh
Q 012718 450 TVSFF 454 (458)
Q Consensus 450 ~~~~~ 454 (458)
+++.+
T Consensus 398 ~~~~~ 402 (403)
T TIGR01979 398 VRKFF 402 (403)
T ss_pred HHHHh
Confidence 87754
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-53 Score=387.51 Aligned_cols=365 Identities=29% Similarity=0.470 Sum_probs=332.1
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
+||||++.++++.+.++++|..++....+||++ .|..|....+.++++|+.+|+++|+++. +|+||+|+|+++++++.
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~-eIiFTSG~TEsnNlaI~ 79 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPE-EIIFTSGATESNNLAIK 79 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCC-eEEEecCCcHHHHHHHH
Confidence 699999999999999999999999999999985 8999999999999999999999999995 99999999999999998
Q ss_pred H--cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccc
Q 012718 148 S--WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL 225 (458)
Q Consensus 148 ~--l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~ 225 (458)
+ +..+.-++|..|+++..+|++++.+...+ +..|.+|.++|++.+|.+|+++|+++|+++|.+|.+.+.||.+|.+.
T Consensus 80 g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQ 158 (386)
T COG1104 80 GAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQ 158 (386)
T ss_pred hhHHhhhcccCCCeEEEcccccHHHHHHHHHH-HhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecc
Confidence 8 43222346889999999999999888887 77899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeec
Q 012718 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL 305 (458)
Q Consensus 226 ~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 305 (458)
|+++|.++|+++|+++|+|++|++|.+|+++..+++|++++|.||++||.|+|+|++++.. .+.|.+.|+++.
T Consensus 159 pI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~--~~~p~i~GGgQE----- 231 (386)
T COG1104 159 PIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGV--RLEPLIHGGGQE----- 231 (386)
T ss_pred cHHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCceEEEEECCCC--ccCceeccCcCC-----
Confidence 9999999999999999999999999999999999999999999999999999999998876 788999998874
Q ss_pred CCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC-CCEEEeCCCCCCcCcccc-EE
Q 012718 306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI-PNIRIYGPKPSEHVQRAA-LC 383 (458)
Q Consensus 306 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~-~v 383 (458)
.++..||.|.++++++..|++...+. ++....++..++++|.+.|.+. |.+.+.+.. ..+.| ++
T Consensus 232 ---------~g~RsGTenv~~Ivg~~~A~~~a~~~-~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~----~~rlP~~~ 297 (386)
T COG1104 232 ---------RGLRSGTENVPGIVGFGKAAEIAVEE-LEEENARLRKLRDRLEDGLLEIIPDVYLNGDD----EPRLPNIL 297 (386)
T ss_pred ---------CCCCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCc----ccCCCCeE
Confidence 56779999999999999999987764 7888999999999999999876 888887775 24465 89
Q ss_pred EEEeCCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 384 SFNVENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
.|.++++..+.+...|..+ ||.++.|+.|++. ....+|. .+.||||++.++|++||+++++.+.++++
T Consensus 298 ~~~f~gv~gE~ll~~L~~~-gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~ 376 (386)
T COG1104 298 NFSFPGVEGESLLLALDLA-GIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIK 376 (386)
T ss_pred EEEeCCCcHHHHHHhcccc-CeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 9999999999874 2345666 58999999999999999999999999999
Q ss_pred hhhcc
Q 012718 453 FFNVF 457 (458)
Q Consensus 453 ~~~~~ 457 (458)
++++.
T Consensus 377 ~lr~~ 381 (386)
T COG1104 377 RLREL 381 (386)
T ss_pred HHhhh
Confidence 88653
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=399.03 Aligned_cols=371 Identities=39% Similarity=0.629 Sum_probs=328.1
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
||||+++.+++|+.+++++.+++.....+++.+.+..+..+.+.++++|+.+++++|++++++|+|++|+|++++.++.+
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~ 80 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASS 80 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHH
T ss_pred CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhc
Confidence 79999999999999999999999998888877777778888999999999999999999845999999999999999998
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
+.. .+++|++|++++.+|+++..+|..++++.|++++.++.+.++.+|++++++.+++++++|++++.+|.||...|++
T Consensus 81 l~~-~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~ 159 (371)
T PF00266_consen 81 LLN-PLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIE 159 (371)
T ss_dssp HHH-HGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHH
T ss_pred ccc-ccccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeec
Confidence 721 1589999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCC
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 308 (458)
+|.++||++|+++++|++|++|..+++++++++|++++|.||++||+|+|+++++++.++++++...+|...........
T Consensus 160 ~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~ 239 (371)
T PF00266_consen 160 EIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEY 239 (371)
T ss_dssp HHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHH
T ss_pred eehhhhhccCCceeEechhccccccccccccccceeeecccccCCCCchhhheehhhhhhccccccccccccccccchhc
Confidence 99999999999999999999999999999999999999999988899999999999999999888777764332222222
Q ss_pred CCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC
Q 012718 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE 388 (458)
Q Consensus 309 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 388 (458)
.+...+.+|+.||+++..++++..+++++.+.|++++.++..++.+++.+.|.+++++++..+... ..+.++++|.++
T Consensus 240 ~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~--~~~~~i~~~~~~ 317 (371)
T PF00266_consen 240 GLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDE--PRRPSIVSFNLP 317 (371)
T ss_dssp CHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCG--GBGTTEEEEEET
T ss_pred ccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeeccc--ccccceEEEeec
Confidence 234566789999999999999999999999999999999999999999999999999999875332 466789999999
Q ss_pred CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHH
Q 012718 389 NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEF 443 (458)
Q Consensus 389 ~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l 443 (458)
+.+..++.+.|.++ ||.++.|..|..+....++..+.+|+|+++|||.+|||+|
T Consensus 318 ~~~~~~~~~~L~~~-~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 318 GSDADDVVKYLEER-GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TSSHHHHHHHHHHH-TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred CCCHHHHHHHHhhc-CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 99999999999999 9999999999987777677789999999999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=372.60 Aligned_cols=373 Identities=58% Similarity=0.936 Sum_probs=327.7
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
+|||+++.+++|+.+.+++.+++.....+++++.+..+....+..+++++.+++++|++..+++++|+|+|+++++++.+
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~ 80 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYG 80 (373)
T ss_pred CcccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHH
Confidence 59999999999999999999999887778777777777888899999999999999998444899999999999999998
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
+... ..+|++|++++++|++....+..+++..|++++.++.+.++.+|++++++.+++++++|++++++|+||.+.|++
T Consensus 81 l~~~-~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~ 159 (373)
T cd06453 81 LGRA-NKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVK 159 (373)
T ss_pred hhhc-CCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHH
Confidence 8310 028999999999999987777888878899999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCC
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 308 (458)
+|.++|+++|+++++|++|+.|..++++.+.++|++++|+||++++.|+|+++++++.++.+.+...||...........
T Consensus 160 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 239 (373)
T cd06453 160 EIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEET 239 (373)
T ss_pred HHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCcccccccccc
Confidence 99999999999999999999999888888889999999999988888899999999999888887766655443333344
Q ss_pred CCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC
Q 012718 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE 388 (458)
Q Consensus 309 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 388 (458)
.|...+.+|+.+|++...++++..+++++.+.|++++.++.+++++++.+.|++++++++..+. ..++++++|.++
T Consensus 240 ~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~~ 315 (373)
T cd06453 240 TYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDA----EDRAGVVSFNLE 315 (373)
T ss_pred ccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCc----cccCCeEEEEEC
Confidence 5666677888999999999999999999999899999999999999999999999889987543 234678999988
Q ss_pred CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 389 NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 389 ~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
+.+..++.+.|.++ ||.+++|..|..+....+|.++++|+|+++++|++|+|++++.|
T Consensus 316 ~~~~~~i~~~l~~~-gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 316 GIHPHDVATILDQY-GIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CcCHHHHHHHHHHC-CEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 77888999999887 99999998888877667777889999999999999999999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=371.96 Aligned_cols=352 Identities=29% Similarity=0.399 Sum_probs=305.5
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
+|||+++.+++|+.+.+++.+++.....+++.+.+..+..+.+.++++|+.+++++|++++ +|+||+|+|+++++++.+
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~t~~~t~a~~~~l~~ 79 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK-EIIFTSGATESNNLAIKG 79 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHHHH
Confidence 6999999999999999999999877666766545555666788899999999999999875 899999999999988876
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
+.....++|++|++++.+|++....+..+. ..|++++.+++++++.+|++++++.++++++++++++++|+||.+.|++
T Consensus 80 ~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~ 158 (364)
T PLN02651 80 VMHFYKDKKKHVITTQTEHKCVLDSCRHLQ-QEGFEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVE 158 (364)
T ss_pred HHHhccCCCCEEEEcccccHHHHHHHHHHH-hcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHH
Confidence 522124789999999999999877776654 6799999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCC
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 308 (458)
+|.++||++|+++++|++|+.|..+++++++++|++++|.||++||.|+|+++++++....+.+...|++.
T Consensus 159 ~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g~~~--------- 229 (364)
T PLN02651 159 EIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQ--------- 229 (364)
T ss_pred HHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCccccCCCc---------
Confidence 99999999999999999999999999999999999999999999999999999999988888877766543
Q ss_pred CCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCCCcCccccEEEEEe
Q 012718 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IPNIRIYGPKPSEHVQRAALCSFNV 387 (458)
Q Consensus 309 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (458)
..+++.||+++..++++.++++++.+. .+++.++.+++.+++.+.|++ +++++++.+.... .++.+++.|.+
T Consensus 230 -----~~~~~~GT~~~~~~~~l~~al~~~~~~-~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~-~~~~~i~~~~~ 302 (364)
T PLN02651 230 -----ERGRRSGTENTPLVVGLGAACELAMKE-MDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPE-KRYPGTLNLSF 302 (364)
T ss_pred -----cCCccCCCccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcc-cCcCCEEEEEe
Confidence 135778999999999999999999874 699999999999999999985 6899999863221 22355999999
Q ss_pred CCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEeeCCCCCHHHHH
Q 012718 388 ENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASLHFYNTKEDVD 441 (458)
Q Consensus 388 ~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~~~~~t~~di~ 441 (458)
++.+..++.+.|.+ |.++.|++|..+ .+..+|. .+.+|+|+++|||++|||
T Consensus 303 ~~~~~~~~~~~L~~---i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 303 AYVEGESLLMGLKE---VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CCCCHHHHHHHhCC---EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 98888999999963 999999999876 4566764 479999999999999985
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=405.05 Aligned_cols=391 Identities=24% Similarity=0.329 Sum_probs=315.5
Q ss_pred hhhhc-CCCCcccccccCCCCeEEecCCCCCCCcH-HHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC
Q 012718 48 GHITR-PDFPILHQEVYGSKKLVYLDNAATSQKPI-AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN 125 (458)
Q Consensus 48 ~~~~r-~~f~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g 125 (458)
.+.+| .+||.+ ++++|||+++.+++++ .+.+++.+++.....|++. .+..+....+.++++|+.+|+++|
T Consensus 21 ~~~~R~~~fp~l-------~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s-~~~~s~~~~~~~e~aR~~ia~~lg 92 (805)
T PLN02724 21 IDELRATEFARL-------KGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHS-QSDSSMRSSDTIESARQQVLEYFN 92 (805)
T ss_pred HHHHHHHHhhhc-------CCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCc-CcchhhhHHHHHHHHHHHHHHHhC
Confidence 34556 689998 5689999999998665 5555666777777778873 455566678889999999999999
Q ss_pred CCCCC-cEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--------CCCCC
Q 012718 126 ASDSG-EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--------DDESP 196 (458)
Q Consensus 126 ~~~~~-~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--------~~~~~ 196 (458)
+++++ +|+||+|+|+|+++++.++ .+++||+|+++..+|+++. +|..++++.|++++.++++ ..+.+
T Consensus 93 a~~~~~~VvFtsnaT~alnlva~~l---~~~~gd~Iv~t~~eH~svl-~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~ 168 (805)
T PLN02724 93 APPSDYACVFTSGATAALKLVGETF---PWSSESHFCYTLENHNSVL-GIREYALEKGAAAIAVDIEEAANQPTNSQGSV 168 (805)
T ss_pred CCccceEEEEeCChHHHHHHHHHHC---CCCCCCeEEEeeccccchH-HHHHHHHHcCCeEEeccchhcccccccccccc
Confidence 98764 6899999999999999998 4789999999989998877 6778888889999999886 33444
Q ss_pred CH--HHHHHhh----------cCCceEEEEecccCcCcccccHHHHHHHHHhc--------CcEEEEeccccCCcccCCC
Q 012718 197 DL--DKLKEML----------SRKTKLVVIHHISNMLASILPIEEIVHWSHDV--------GAKVLVDACQSVPHMVVDV 256 (458)
Q Consensus 197 d~--~~l~~~l----------~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~--------~~~vivD~a~~~g~~~~~~ 256 (458)
++ +++++.+ .+++++|++++.+|.||.+.|++.|.++++.. ++++++|++|++|+.++|+
T Consensus 169 ~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv 248 (805)
T PLN02724 169 VVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDL 248 (805)
T ss_pred ccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCCh
Confidence 43 5566653 14568999999999999999999775555432 3689999999999999999
Q ss_pred CCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCC---CCCCCCCCccCCCCCCHHHHHHHHH
Q 012718 257 QGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH---STFADPPSRFEAGTPAIGEAIGLGA 332 (458)
Q Consensus 257 ~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~gt~~~~~~~~l~~ 332 (458)
.++++|++++|+||++| |.|+|+|++++++++.+.+...||+......... ......+.+|+.||+|+.+++++.+
T Consensus 249 ~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~a 328 (805)
T PLN02724 249 SRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRH 328 (805)
T ss_pred hhcCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHH
Confidence 99999999999999887 9999999999999888898888877643221111 1122346899999999999999999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC------CEEEeCCCC--CCcCccccEEEEEeCCCC-----hHHHHHHH
Q 012718 333 AIDYLSTIGMQKIHAYEMELAKYLYENLLSIP------NIRIYGPKP--SEHVQRAALCSFNVENIH-----PTDIATLL 399 (458)
Q Consensus 333 al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~------~~~~~~~~~--~~~~~~~~~v~~~~~~~~-----~~~~~~~l 399 (458)
+++++.+.|++++.++..+|.+++.+.|.+++ +++++++.. .+...++++++|++.+.+ ..++. .|
T Consensus 329 al~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~-~l 407 (805)
T PLN02724 329 GFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVE-KL 407 (805)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHH-HH
Confidence 99999999999999999999999999999886 588887641 112357899999998654 33444 45
Q ss_pred hhhcCeEeccCCCCChhhHh-hcC--------------------------CCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 400 DQQYGVATRSGHHCAQPLHR-YLG--------------------------VNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 400 ~~~~gi~~~~g~~~~~~~~~-~~g--------------------------~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.+.+||.++.|++|+++.+. .+| ..+++|+|+++|||.+|||+++++|++.+
T Consensus 408 ~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 408 ASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred HHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 44459999999999987653 222 13899999999999999999999999976
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=363.20 Aligned_cols=363 Identities=30% Similarity=0.460 Sum_probs=308.4
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
+|||+++.+++|+.+.+++.+++.....+++. .+..+..+.+.++++|+.+++++|++++ +|+||+|+|+++++++.+
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~t~~~t~a~~~al~~ 78 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSS-MHSFGGEVGKAVEEAREQVAKLLGAEPD-EIIFTSGGTESDNTAIKS 78 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCcHHHHHHHHHHH
Confidence 59999999999999999999998876666653 4445566788899999999999999865 899999999999999887
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
+.. ...++++|+++..+|+++...+..+ +..|++++.++.++++.+|++++++.++++++++++++++|+||.+.|++
T Consensus 79 ~~~-~~~~~~~vv~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~ 156 (379)
T TIGR03402 79 ALA-AQPEKRHIITTAVEHPAVLSLCQHL-EKQGYKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIE 156 (379)
T ss_pred HHH-hcCCCCeEEEcccccHHHHHHHHHH-HHcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHH
Confidence 521 1245789999999999887776655 44799999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCC
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 308 (458)
+|.++|+++|+++++|++|++|..++++.++++|++++|+||++||.|+|+++++++. .+.+...|+..
T Consensus 157 ~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~--~~~p~~~g~~~--------- 225 (379)
T TIGR03402 157 EIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGT--RFRPLLRGGHQ--------- 225 (379)
T ss_pred HHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCceEEEEECCCC--CCCCcccCCcc---------
Confidence 9999999999999999999999999999999999999999999999999999999875 35555544322
Q ss_pred CCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCCCcCccccEEEEEe
Q 012718 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IPNIRIYGPKPSEHVQRAALCSFNV 387 (458)
Q Consensus 309 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (458)
..+++.||+++..++++.++++++.+ .++.+.++.+++.+++.+.|.+ ++++++.++.. ....+++.|.+
T Consensus 226 -----~~~~~~gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~ 296 (379)
T TIGR03402 226 -----ERGRRAGTENVPGIVGLGKAAELATE-HLEEENTRVRALRDRLEAGLLARIPDARLNGDPT---KRLPNTVNISF 296 (379)
T ss_pred -----CCCcCCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCc---cCCCCEEEEEe
Confidence 13456899999999999999999877 4788889999999999999986 88999877542 12234788888
Q ss_pred CCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 388 ENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 388 ~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
++.+..++...|.++ ||.++.|++|..+ ....+|. .+.+|+|++.|+|++|||++++.|+++++++++
T Consensus 297 ~~~~~~~~~~~l~~~-gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 297 EYIEGEAILLLLDME-GICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred cCCCHHHHHHhhccC-CEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 877888999999877 9999999998765 3445554 478999999999999999999999999887653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=363.20 Aligned_cols=375 Identities=36% Similarity=0.572 Sum_probs=317.1
Q ss_pred hhhcCCCCcccccccCCCC-eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC
Q 012718 49 HITRPDFPILHQEVYGSKK-LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS 127 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~-~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~ 127 (458)
+.+|++||.+ +.+ ++|||+++.+++|+.+.+++.+++.....++. +.+.......+..+++++.+++++|++
T Consensus 4 ~~~r~~f~~~------~~~~~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ia~~~~~~ 76 (397)
T TIGR01976 4 EAVRGQFPAL------ADGDRVFFDNPAGTQIPQSVADAVSAALTRSNANRG-GAYESSRRADQVVDDAREAVADLLNAD 76 (397)
T ss_pred hHHHhhCCcC------CCCCeEEecCCccCCCCHHHHHHHHHHHHhcCCCCC-CCchHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4568899987 233 79999999999999999999999876544432 223333445677889999999999998
Q ss_pred CCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhc
Q 012718 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLS 206 (458)
Q Consensus 128 ~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~ 206 (458)
+. +|++++|++++++.++.++.. .+++||+|++++++|+++...|...++..|++++.++.++ ++.+|++++++.++
T Consensus 77 ~~-~v~~~~~~t~~l~~~~~~~~~-~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~ 154 (397)
T TIGR01976 77 PP-EVVFGANATSLTFLLSRAISR-RWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLS 154 (397)
T ss_pred CC-eEEEeCCHHHHHHHHHHHHHh-cCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcC
Confidence 76 799999999999988776521 2679999999999999988888888888999999999876 68889999999999
Q ss_pred CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccc
Q 012718 207 RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDL 286 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~ 286 (458)
+++++|++++++|+||.+.|+++|.++|+++|+++++|++|+.|..++++.++++|++++|+||++||. +|++++++++
T Consensus 155 ~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~l~~~~~~ 233 (397)
T TIGR01976 155 PRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPEL 233 (397)
T ss_pred CCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCCc-eEEEEEcHHH
Confidence 899999999999999999999999999999999999999999988888888889999999999999876 8999999998
Q ss_pred cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC--------------HHHHHHHHHHH
Q 012718 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG--------------MQKIHAYEMEL 352 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g--------------~~~~~~~~~~l 352 (458)
++.+.+....+ .+...+.+|+.||+++..++++..+++++.+.| ++++.++..++
T Consensus 234 ~~~l~~~~~~~-----------~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 302 (397)
T TIGR01976 234 LMNLPPYKLTF-----------SYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRL 302 (397)
T ss_pred HhhCCCccccC-----------ccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHH
Confidence 88777654322 233445789999999999999999999998765 67888999999
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCC---CCeEEE
Q 012718 353 AKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV---NASARA 429 (458)
Q Consensus 353 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~---~~~lRi 429 (458)
.+++.+.|+++++++++.+... ..+++++.|.+++.+..++.++|.++ ||.++.+++|..+....++. .+++||
T Consensus 303 ~~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~iRi 379 (397)
T TIGR01976 303 AEYLLVGLSDLPGVTLYGVARL--AARVPTVSFTVHGLPPQRVVRRLADQ-GIDAWAGHFYAVRLLRRLGLNDEGGVVRV 379 (397)
T ss_pred HHHHHHHHhcCCCEEEeCCCCc--cCCCceEEEEeCCcCHHHHHHHHHHC-CeEEEeCccchHHHHHHhCCCCCCCeEEE
Confidence 9999999999877998876211 23578889988877788899999988 99999998888776666664 368999
Q ss_pred eeCCCCCHHHHHHHHHHH
Q 012718 430 SLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 430 s~~~~~t~~di~~l~~~l 447 (458)
|++.|+|++|++++++.|
T Consensus 380 s~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 380 GLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred EeeccCCHHHHHHHHHhC
Confidence 999999999999999864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=357.87 Aligned_cols=371 Identities=34% Similarity=0.593 Sum_probs=313.8
Q ss_pred EEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 69 VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 69 i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
+|||+++.+ ++|+.+.+++.+++.....+++.+.+.......+..+++++.+++++|++..++|++|+|+|+++++++.
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~ 80 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALK 80 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence 589999877 7889999999999887544444333333334567888999999999999755589999999999999998
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
++ +++||+|+++.++|++...++..+++..|++++.++.++++.+|++++++.++++++++++++++|+||.++|+
T Consensus 81 ~~----~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~ 156 (376)
T TIGR01977 81 GL----LKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPI 156 (376)
T ss_pred hc----cCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCH
Confidence 86 78999999999999998888888888889999999988888899999999998899999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
++|.++|+++|+++|+|++|++|..++++...++|++++|+|| ++||.|+|+++++++. .+.+...++......+.
T Consensus 157 ~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~--~~~~~~~~~~~~~~~~~- 233 (376)
T TIGR01977 157 EEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI--KLKPLKSGGTGSHSALI- 233 (376)
T ss_pred HHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCc--CcCceecCCCccccccc-
Confidence 9999999999999999999999999999988999999999999 5679999999998876 34555544432211111
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN 386 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (458)
......+.+|+.||++...++++..+++++.+.|++.+.++.+++++++.+.|.+.+++++..+... ..+.++++|.
T Consensus 234 -~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~--~~~~~~v~~~ 310 (376)
T TIGR01977 234 -DQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADP--ANRVGVVSFT 310 (376)
T ss_pred -cccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCc--cccCCeEEEE
Confidence 1112334688999999999999999999999999999999999999999999998889998875321 3457799999
Q ss_pred eCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCC--CCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 387 VENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV--NASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 387 ~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~--~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+++.+..++.+.|.+++||.++.|.+|....+..+|. .+.+|++++.++|.+||++++++|++
T Consensus 311 ~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 311 VEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 9988888999999987799999999888766655543 57999999999999999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=360.18 Aligned_cols=365 Identities=25% Similarity=0.372 Sum_probs=305.1
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
..+|||+++.+++|+.+.+++.+++.....+++...+..+....+.++++|+.+++++|++++ +|+|++|+|+++++++
T Consensus 3 ~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~~g~t~a~~~~l 81 (402)
T TIGR02006 3 LPIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR-EIVFTSGATESNNLAI 81 (402)
T ss_pred ccEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHH
Confidence 359999999999999999999999876666665433444444567889999999999999875 8999999999999998
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccccc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~ 226 (458)
.++.....++|++|+++.++|+++..++..+ +..|++++.+++++++.+|++.+++.++++++++++++++|+||.+.|
T Consensus 82 ~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~ 160 (402)
T TIGR02006 82 KGIAHFYKSKGNHIITSKTEHKAVLDTCRYL-EREGFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQD 160 (402)
T ss_pred HHHHHhhcCCCCEEEECCCccHHHHHHHHHH-HhcCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceeccc
Confidence 7763112468999999999999988776544 456999999999888889999999999989999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
+++|.++|+++|+++++|++|++|..++++.+.++|++++|+||++||.|+|+++++++....+.+...|++.
T Consensus 161 ~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~------- 233 (402)
T TIGR02006 161 IAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGH------- 233 (402)
T ss_pred HHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCceEEEEEccCCCCCCCceecCCCc-------
Confidence 9999999999999999999999999999999999999999999999999999999998876666665544332
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEE
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSF 385 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~ 385 (458)
..+++.||++...++++..+++++.. +++.+.++.+++++++.+.|++++++++.++.. .+.+ ++.+
T Consensus 234 -------~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~----~~~p~~~~v 301 (402)
T TIGR02006 234 -------ERGMRSGTLPTHQIVGMGEAFRIAKE-EMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLE----HRVPGNLNV 301 (402)
T ss_pred -------cCCccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCcc----ccCCCeEEE
Confidence 24678899999999999999999876 588899999999999999999998998876532 2233 3345
Q ss_pred EeCCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 386 NVENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++.+..++...+ + +|.++.|.+|... ....+|. .+.+|+|+++|+|++|||++++.|.++++++
T Consensus 302 ~f~~~~~~~~~~~l--~-~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 302 SFNYVEGESLIMAL--K-DLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred EEeCcCHHHHHHhc--C-CEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 55555566676555 4 8999999988762 3445555 3899999999999999999999999998776
Q ss_pred h
Q 012718 455 N 455 (458)
Q Consensus 455 ~ 455 (458)
+
T Consensus 379 ~ 379 (402)
T TIGR02006 379 R 379 (402)
T ss_pred H
Confidence 4
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=355.29 Aligned_cols=365 Identities=25% Similarity=0.375 Sum_probs=305.5
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
+|||+++++++++.+.+++.+++.....|++ +.+..+......+++.++.+++.+|+.+.++|++|+|+|+++++++.+
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~ 79 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPN-SLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKG 79 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhcCcCCc-cccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHH
Confidence 5999999999999999999999988777876 445555556677888888888888874334999999999999999987
Q ss_pred cCCCC-CCC-CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccccc
Q 012718 149 WGLSN-LKS-GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226 (458)
Q Consensus 149 l~~~~-~~~-g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~ 226 (458)
+.... .++ +++|+++..+|++....+. .++..|++++.+++++++.+|++++++.++++++++++++++||||.+.|
T Consensus 80 ~~~~~~~~~~~~~vi~~~~e~ps~~~~~~-~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~ 158 (382)
T TIGR03403 80 VYFDEILKGGKNHIITTEVEHPAVRATCA-FLESLGVEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFP 158 (382)
T ss_pred HHHhhcccCCCCEEEEcCCccHHHHHHHH-HHHHCCCEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccC
Confidence 62111 134 5689999999998887665 44678999999999888999999999999989999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
+++|.++|+++|+++++|++|+.|..++++.++++|++++|+||++||+|+|+++++++. .+.+...|+..
T Consensus 159 ~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~vr~~~--~~~p~~~g~~~------- 229 (382)
T TIGR03403 159 IKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGV--ELTPLFHGGEH------- 229 (382)
T ss_pred HHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCceEEEEECCCC--CCCCcccCCCC-------
Confidence 999999999999999999999999998999889999999999999999999999999875 44554443322
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN 386 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (458)
..+++.||++...++++..++++..+ .++...++.+++++++.+.|++++++++..+.. ....+++.|.
T Consensus 230 -------~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~---~~~~~~~~~~ 298 (382)
T TIGR03403 230 -------MGGRRSGTLNVPYIVAMGEAMRLANE-YLDFEKSHVRRLRDRLEDALLELPDVFVVGDRE---HRVPNTILIS 298 (382)
T ss_pred -------CCCcccCCcChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCC---CCcCCEEEEE
Confidence 12355799999999999999998876 378889999999999999999999999987642 1223488899
Q ss_pred eCCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 387 VENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 387 ~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+++.+..++...|.++ ||.++.|+.|... ....+|. .+.+|+|+++|+|++|||++++.|++++++++
T Consensus 299 ~~~~~~~~~~~~L~~~-gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~ 377 (382)
T TIGR03403 299 IKGVEGEAMLWDLNKA-GIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred eCCCCHHHHHHhhccC-CEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9888888899888888 9999999988743 2233443 36899999999999999999999999998775
Q ss_pred c
Q 012718 456 V 456 (458)
Q Consensus 456 ~ 456 (458)
.
T Consensus 378 ~ 378 (382)
T TIGR03403 378 A 378 (382)
T ss_pred h
Confidence 4
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=337.31 Aligned_cols=364 Identities=35% Similarity=0.492 Sum_probs=297.2
Q ss_pred CCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 65 SKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 65 ~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+.+.+|||+++++++++.|++++.+|+.....|||+. ..+.+....+|++|+.+|+++|+++. +|+||+|+|+++++
T Consensus 41 ~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~-dIiFts~ATEs~Nl 117 (428)
T KOG1549|consen 41 GTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPS-DIVFTSGATESNNL 117 (428)
T ss_pred CCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCC-cEEEeCCchHHHHH
Confidence 5789999999999999999999999999999999876 44556677799999999999999998 59999999999999
Q ss_pred HHHHcCCCCCCCCC----EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCc
Q 012718 145 VAYSWGLSNLKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM 220 (458)
Q Consensus 145 ~~~~l~~~~~~~g~----~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~ 220 (458)
++.++. +..++ .|++.+.+|+++..++..+ +..|++++.+|+..++.+|++.+++.|+++|++|.+.+++|.
T Consensus 118 vl~~v~---~~~~~~~~k~iitl~~eH~~v~~s~~~l-~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~ 193 (428)
T KOG1549|consen 118 VLKGVA---RFFGDKTKKHIITLQTEHPCVLDSCRAL-QEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNE 193 (428)
T ss_pred HHHHhh---ccccccccceEEEecccCcchhHHHHHH-HhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccC
Confidence 999995 44455 8999999999999887776 445899999999988999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEecc-ccccCCCccccCcc
Q 012718 221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSD-LLSAMPPFLGGGEM 299 (458)
Q Consensus 221 tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~-~~~~l~~~~~g~~~ 299 (458)
+|++.|+++|.++|+++|+.+++|++|+.|.+++|+.++++|+++.|.||+|||+|+|+||++++ -.-.+.|.+.||++
T Consensus 194 ~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~iGaLYvr~~~~~~~~~p~~~GGgq 273 (428)
T KOG1549|consen 194 IGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKRPRLRVEPPLSGGGQ 273 (428)
T ss_pred ccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCcceEEEEccCCCcccccCcccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999982 22234467777776
Q ss_pred eEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCCCcCc
Q 012718 300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IPNIRIYGPKPSEHVQ 378 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~ 378 (458)
. +.++.||.+......+..+.++.... +.....++.++...+...+.. .++..+.++++. .
T Consensus 274 ~--------------r~~rsGT~~~~~~~~~gsA~e~~~~~-~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~~---~ 335 (428)
T KOG1549|consen 274 E--------------RGLRSGTVATPLAVGLGSAAEFVNKE-MAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGKS---R 335 (428)
T ss_pred c--------------cccccCCcCchhhhhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhhhCchhhccCCccc---c
Confidence 4 56889999999999999999998774 445555666677777776643 567777777653 4
Q ss_pred cccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 379 RAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 379 ~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l 447 (458)
..+.+.|.++-.....+...+. .+.++.|..|... .....|. ..++|||++.|++++|++++++.+
T Consensus 336 ~~~~~~~~~~~~~g~~~~~~~~---~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i 412 (428)
T KOG1549|consen 336 YPGLVSLSFPYVEGESLLMDLK---DVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAI 412 (428)
T ss_pred cccceeeecccccCcchhhhhh---hhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHH
Confidence 4557778777322222322222 3334444333221 1122233 679999999999999999999999
Q ss_pred HHHHHhhhc
Q 012718 448 NETVSFFNV 456 (458)
Q Consensus 448 ~~~~~~~~~ 456 (458)
.+.++....
T Consensus 413 ~~~v~~~~~ 421 (428)
T KOG1549|consen 413 KKLVSLLRE 421 (428)
T ss_pred HHHHHhccc
Confidence 999886544
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=350.38 Aligned_cols=383 Identities=20% Similarity=0.253 Sum_probs=300.1
Q ss_pred CCccchhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhh-hHHHHHHHHHHHHH
Q 012718 42 TDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS-AKATDEYELARKKV 120 (458)
Q Consensus 42 ~~~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 120 (458)
.+..+.++.+|++||...... +++++|||+++.+++|+.+.+++.+++..+..+...+ +..+ ..+....+.+++ +
T Consensus 4 ~~~~~~~~~~r~~f~~~~~~~--~~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~ 79 (406)
T TIGR01814 4 LDEADPLRALRDEFHLPKIGD--ENAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRG-HNTGKAPWFTLDESLLK-L 79 (406)
T ss_pred ccccChHHHHHHhcCCCcccC--CCCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhcc-CccCCCChhhhhhhhcc-c
Confidence 345566777899999752211 1568999999999999999999999987764443222 1111 122333344444 5
Q ss_pred HHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC---CCEEEEcCCCCccchHHHHHHHHHcCCeE----EEEeCCCC
Q 012718 121 AAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS---GDEVILTVAEHHSAIVPWQLVAQKTGANL----KFLNLNDD 193 (458)
Q Consensus 121 a~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~---g~~vl~~~~~~~s~~~~~~~~a~~~g~~~----~~v~~~~~ 193 (458)
+++|++++ +|+||+|+|++++.++.++ +++ ++.|++++.+|+++..+|...+++.|+++ +.++.+.+
T Consensus 80 -~l~g~~~~-~v~~~~~~t~~l~~~~~~~----~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (406)
T TIGR01814 80 -RLVGAKED-EVVVMNTLTINLHLLLASF----YKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREE 153 (406)
T ss_pred -cccCCCCC-cEEEeCCchHHHHHHHHHh----cCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCC
Confidence 89999875 9999999999999999886 333 34788989999999888887778889887 56666666
Q ss_pred CCCCHHHHHHhhc---CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 194 ESPDLDKLKEMLS---RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 194 ~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
+.+|++++++.++ +++++|++++++|.||.+.|+++|.++||++|+++++|++|++|..++++.++++|++++|+||
T Consensus 154 g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK 233 (406)
T TIGR01814 154 ETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYK 233 (406)
T ss_pred CccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCcc
Confidence 7889999988774 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCceeEEEEeccccccCCCccccCcceEee--ecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 271 M-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDV--FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 271 ~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
+ +||+| |+++++++....+.+...||...... +.....+...+.+|+.||+++..++++.++++++.+.|++++++
T Consensus 234 ~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~ 312 (406)
T TIGR01814 234 YLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRK 312 (406)
T ss_pred ccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5 56778 77777666555566666665442211 11111222334688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCC
Q 012718 348 YEMELAKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV 423 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~ 423 (458)
+..++.+++.+.|.++ +++++..+... ..++++++|.++ .+..++.+.|.++ ||.+... .
T Consensus 313 ~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~--~~r~~~v~~~~~-~~~~~~~~~L~~~-gi~v~~~------------~ 376 (406)
T TIGR01814 313 KSLLLTDYLEELIKARCGGPPVLTIITPRDH--AQRGCQLSLTHP-VPGKAVFQALIKR-GVIGDKR------------E 376 (406)
T ss_pred HHHHHHHHHHHHHHhhcCCCCceEEeCCCCh--hhcCCeEEEEec-CCHHHHHHHHHHC-CEEEecc------------C
Confidence 9999999999999875 35888876421 245678999988 5678899999888 9987422 1
Q ss_pred CCeEEEee-CCCCCHHHHHHHHHHHHHHH
Q 012718 424 NASARASL-HFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 424 ~~~lRis~-~~~~t~~di~~l~~~l~~~~ 451 (458)
++.+|+|+ +.|||.+||+++++.|++++
T Consensus 377 ~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 377 PSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred CCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 46899999 68999999999999998865
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=344.37 Aligned_cols=364 Identities=23% Similarity=0.296 Sum_probs=300.3
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
++|||+++.+++|+.+.+++.+++.....++. +.+..+......++++|+.+++++|++++ +|++++|+|+++..++.
T Consensus 1 ~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~~~g~t~a~~~~~~ 78 (381)
T PRK02948 1 MIYLDYAATTPMSKEALQTYQKAASQYFGNES-SLHDIGGTASSLLQVCRKTFAEMIGGEEQ-GIYFTSGGTESNYLAIQ 78 (381)
T ss_pred CEeccCCCCCCCCHHHHHHHHHHHHhcCCCCc-cccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCcHHHHHHHHHH
Confidence 48999999999999999999999987666665 45566666778899999999999999865 99999999999999887
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
++.....++|+.|+++..+|++....+. .++..|++++.+++++++.+|++++++.+++++++|++++++||||.+.|+
T Consensus 79 ~~~~~~~~~g~~vv~~~~~h~s~~~~~~-~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~ 157 (381)
T PRK02948 79 SLLNALPQNKKHIITTPMEHASIHSYFQ-SLESQGYTVTEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPI 157 (381)
T ss_pred HHHHhccCCCCEEEECCcccHHHHHHHH-HHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhH
Confidence 7631113578999999999998876655 456779999999998888899999999998899999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
++|.++|+++|+++++|++|++|..++++.++++|+++.|+||++||.|+|+++++++. .+.+...++.
T Consensus 158 ~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~--~~~~~~~~~~--------- 226 (381)
T PRK02948 158 AEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQV--RWKPVFPGTT--------- 226 (381)
T ss_pred HHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCcEEEEEEcCCC--CCCCcccCCC---------
Confidence 99999999999999999999999998998899999999999999999999999998875 1222221111
Q ss_pred CCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe
Q 012718 308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV 387 (458)
Q Consensus 308 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (458)
...+|+.||++...++++.++++.+.+ .+++++++++++++++.+.|+++ ++++....... .....++.|.+
T Consensus 227 -----~~~~~~~~t~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~-~~~~~i~~~~~ 298 (381)
T PRK02948 227 -----HEKGFRPGTVNVPGIAAFLTAAENILK-NMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHST-SCLPHIIGVTI 298 (381)
T ss_pred -----CCCCcCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCc-cCcCCEEEEEe
Confidence 124678899999999999999998755 47889999999999999999988 54443221110 11234788888
Q ss_pred CCCChHHHHHHHhhhcCeEeccCCCCChhh------HhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 388 ENIHPTDIATLLDQQYGVATRSGHHCAQPL------HRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 388 ~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~------~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
++.+..++...|.++ ||.++.|..|..+. ...+|. .+.+|+|++.|+|++|++++++.|+++++++
T Consensus 299 ~~~~~~~~~~~l~~~-gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 375 (381)
T PRK02948 299 KGIEGQYTMLECNRR-GIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQF 375 (381)
T ss_pred CCCCHHHHHHhcccC-CEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 877778888888777 99999999886532 233443 5799999999999999999999999988754
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=333.05 Aligned_cols=366 Identities=26% Similarity=0.374 Sum_probs=294.0
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHH--HhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYE--AYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
.+|||+++.+++|+.+.+++.+++. ....+++...+..+....+.++++|+.+++++|++++ ++++++|+|++++++
T Consensus 4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~-~v~~~~g~t~al~~~ 82 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR-EIVFTSGATESDNLA 82 (404)
T ss_pred eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC-eEEEeCCHHHHHHHH
Confidence 5999999999999999999999886 3344444333333333456788999999999999875 899999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL 225 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~ 225 (458)
+.++....+++||.|++++.+|+++..++..+ +..|++++.++.++++.+|++.+++++++++++|++++++|+||.+.
T Consensus 83 l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~-~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~ 161 (404)
T PRK14012 83 IKGAAHFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQ 161 (404)
T ss_pred HHHHHHhhcCCCCEEEEecCccHHHHHHHHHH-HhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchh
Confidence 87763112478999999999999887776654 45699999999988898999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeec
Q 012718 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL 305 (458)
Q Consensus 226 ~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 305 (458)
|+++|.++||++|+++|+|++|++|..++++...++|++++|+||++||.|+|+++++++....+.+...|++.
T Consensus 162 ~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~~~~~g~~~------ 235 (404)
T PRK14012 162 DIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGH------ 235 (404)
T ss_pred hHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCceEEEEEecCCCCCCCceecCCCc------
Confidence 99999999999999999999999999988888889999999999999999999999998765556555444332
Q ss_pred CCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEE
Q 012718 306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSF 385 (458)
Q Consensus 306 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (458)
..+++.||++...+.++.++++.++. +++.+.++.+++++++.+.|++++++++..+... ......+++|
T Consensus 236 --------~~~~~~gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~-~~~~~~~~~~ 305 (404)
T PRK14012 236 --------ERGMRSGTLPTHQIVGMGEAARIAKE-EMATENERIRALRDRLWNGIKDIEEVYLNGDLEQ-RVPGNLNVSF 305 (404)
T ss_pred --------cCCccCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc-cCCCEEEEEE
Confidence 13577889999999999999988765 4777889999999999999999988887654211 0011224566
Q ss_pred EeCCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 386 NVENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+. +..++...|. ++.++.|.+|.+. ....++. .+.+|+|++.++|++|+|++++.|+++++++
T Consensus 306 ~~~--~~~~~~~~l~---~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 306 NYV--EGESLIMALK---DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred eCc--CHHHHHHhCC---CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 553 3456766664 6777778777542 1122333 4789999999999999999999999998876
Q ss_pred hc
Q 012718 455 NV 456 (458)
Q Consensus 455 ~~ 456 (458)
+.
T Consensus 381 ~~ 382 (404)
T PRK14012 381 RE 382 (404)
T ss_pred Hh
Confidence 43
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=320.38 Aligned_cols=324 Identities=26% Similarity=0.382 Sum_probs=273.0
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
|||+++.+++|+.+.+++.+++.....+++...+..+......++++|+.+++++|++++ +|+||+|+|++++.++.++
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~~g~t~a~~~~l~~l 79 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE-EVIFTSGATESNNLAILGL 79 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEeCCHHHHHHHHHHHH
Confidence 799999999999999999999876555554334444555677889999999999999876 8999999999999998877
Q ss_pred CCCCCCCC-CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 150 GLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 150 ~~~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
.....++| +.|+++..+|++...++..+ +..|++++.++.++++.+|++++++.+++++++|++++++|+||.+.|++
T Consensus 80 ~~~~~~~g~~~vi~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~ 158 (353)
T TIGR03235 80 ARAGEQKGKKHIITSAIEHPAVLEPIRAL-ERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIR 158 (353)
T ss_pred HHhcccCCCCeeeEcccccHHHHHHHHHH-HhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHH
Confidence 32112355 78999999999988777654 55699999999988888999999999988999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEecccccc--CCCccccCcceEeeecC
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA--MPPFLGGGEMISDVFLD 306 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~--l~~~~~g~~~~~~~~~~ 306 (458)
+|.++|+++|+++++|++|+.|..++++.++++|++++|+||++||.|+|+++++++.+.. +.+...+++
T Consensus 159 ~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~~~~~~~~~~-------- 230 (353)
T TIGR03235 159 EIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGG-------- 230 (353)
T ss_pred HHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCceEEEEEccCcccccccCceeeCCC--------
Confidence 9999999999999999999999999999999999999999999999999999999986433 344333322
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN 386 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (458)
...+++.||+++..++++.++++++.. +++++.++++++.+++.+.|++ +|+++..++. ....+++.|.
T Consensus 231 ------~~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~---~~~~~i~~~~ 299 (353)
T TIGR03235 231 ------QERGLRPGTLPVHLIVGMGEAAEIARR-NAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPA---ETIPHILNFS 299 (353)
T ss_pred ------CcCccccCCCChHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcc---cccCCEEEEE
Confidence 125688899999999999999998764 7899999999999999999988 5999876542 2335589999
Q ss_pred eCCCChHHHHHHHhhhcCeEeccCCCCChh
Q 012718 387 VENIHPTDIATLLDQQYGVATRSGHHCAQP 416 (458)
Q Consensus 387 ~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~ 416 (458)
+++.+..++.+.|. + +|.+++|..|...
T Consensus 300 ~~~~~~~~v~~~L~-~-~i~v~~g~~~~~~ 327 (353)
T TIGR03235 300 IDGVNSEALIVNLR-A-DAAVSTGSACSSS 327 (353)
T ss_pred eCCcCHHHHHHHHh-C-CeEEEchhhcCCC
Confidence 88888889999995 5 8999999988654
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=314.58 Aligned_cols=354 Identities=18% Similarity=0.158 Sum_probs=291.1
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
++..+|.+.++.+.++.+.+++.+... ++.+..+.+.++++++.+++++|++.++.+++++++|++++.+
T Consensus 7 ~~~~~l~~pGP~~~~~~V~~a~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a 76 (401)
T PLN02409 7 PGRNHLFVPGPVNIPERVLRAMNRPNE----------DHRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESA 76 (401)
T ss_pred CCCceeccCCCCCCCHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHH
Confidence 345678888888999999999865421 1234567888999999999999998655789999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC----CceEEEEecccCcC
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHISNML 221 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~t 221 (458)
+..+ +++||+|++++++|++. .|..++++.|++++.++.+.++.+|++++++.+++ ++++|++++++|+|
T Consensus 77 ~~~~----~~~Gd~Vlv~~~~~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~t 150 (401)
T PLN02409 77 LTNT----LSPGDKVVSFRIGQFSL--LWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETST 150 (401)
T ss_pred HHhc----CCCCCEEEEeCCCchhH--HHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccc
Confidence 8876 78999999999999876 46778888999999999887666899999999986 78999999999999
Q ss_pred cccccHHHHHHH--HHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccCCCcc----
Q 012718 222 ASILPIEEIVHW--SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFL---- 294 (458)
Q Consensus 222 G~~~~l~~i~~l--~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~---- 294 (458)
|.++|+++|.++ |+++|+++++|++|++|..+++++++++|++++|.||+ ++|.|+|+++++++.++.+.+..
T Consensus 151 G~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~ 230 (401)
T PLN02409 151 GVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRV 230 (401)
T ss_pred cccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCe
Confidence 999999999999 99999999999999999999999999999999999995 57899999999998877765422
Q ss_pred -ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 295 -GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 295 -~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
.+|.... .+. ....+..+|++...++++..+++++.+.|++++.++.+++++++.+.|+++ |++++.+.+
T Consensus 231 ~~~~~~~~-------~~~-~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~ 301 (401)
T PLN02409 231 FFDWADYL-------KFY-KLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKP 301 (401)
T ss_pred ecCHHHHH-------HHH-hcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCh
Confidence 1211100 000 011233569999999999999999999999999999999999999999987 888887532
Q ss_pred CCcCccc-cEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 374 SEHVQRA-ALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 374 ~~~~~~~-~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
. .++ .+++|.++ +++..++.+.+.+++||.+..|... + ....+||+...|++.+|+.+++++|++++
T Consensus 302 ~---~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~-------~-~~~~~Rig~~g~~~~~~~~~~~~~~~~~l 370 (401)
T PLN02409 302 E---WRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNK-------V-AGKVFRIGHLGNVNELQLLGALAGVEMVL 370 (401)
T ss_pred h---hcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCc-------c-cCCEEEEcCCCCCCHHHHHHHHHHHHHHH
Confidence 2 334 46778875 6777889888877779999877521 0 15789999999999999999999999998
Q ss_pred Hhhh
Q 012718 452 SFFN 455 (458)
Q Consensus 452 ~~~~ 455 (458)
+++.
T Consensus 371 ~~~g 374 (401)
T PLN02409 371 KDVG 374 (401)
T ss_pred HHcC
Confidence 8653
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=299.35 Aligned_cols=347 Identities=19% Similarity=0.209 Sum_probs=275.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC
Q 012718 73 NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 73 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
.++..+.|+.+.+++.+... ...+....+..+++++.+++++|+++.+.+++++|+|+++.+++.++
T Consensus 4 ~~~~~~~~~~v~~a~~~~~~----------~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~--- 70 (356)
T cd06451 4 IPGPSNVPPRVLKAMNRPML----------GHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL--- 70 (356)
T ss_pred cCCCcCCCHHHHHHhCCCcc----------CCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh---
Confidence 34566788999999865421 11223456778899999999999965546789999999999999987
Q ss_pred CCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHHHHH
Q 012718 153 NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
+++|+.|+++.++|++. .+...++..|++++.++.++++.+|++++++.+++ ++++|++++++|++|.+.|+++|.
T Consensus 71 -~~~g~~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~ 147 (356)
T cd06451 71 -LEPGDKVLVGVNGVFGD--RWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIG 147 (356)
T ss_pred -CCCCCEEEEecCCchhH--HHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHH
Confidence 67899999999888864 24566778899999999987788899999999987 899999999999999999999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCC--ccccCcceEeeecCCC
Q 012718 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPP--FLGGGEMISDVFLDHS 308 (458)
Q Consensus 232 ~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~--~~~g~~~~~~~~~~~~ 308 (458)
++|+++|+++++|++|++|..++++...++|++++|+||+++ |.|+|+++++++.++.+.. ...+|..... ...
T Consensus 148 ~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 224 (356)
T cd06451 148 ALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLL---LLL 224 (356)
T ss_pred HHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHH---HHH
Confidence 999999999999999999988888888889999999999655 7889999999987766542 1111111000 000
Q ss_pred CCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEe
Q 012718 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNV 387 (458)
Q Consensus 309 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 387 (458)
.+. ....++.+|+++..+.++.++++++...+++++.++.+++++++.+.|.++ ++++..++. .+.+ ++++.+
T Consensus 225 ~~~-~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----~~~~~~~~~~~ 298 (356)
T cd06451 225 KYW-GEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPE----LRSPTVTAVLV 298 (356)
T ss_pred hhh-cccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcc----cCCCceEEEEC
Confidence 010 112366789999999999999999988889999999999999999999987 888865432 2244 556666
Q ss_pred C-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 388 E-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 388 ~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
+ +.+..++++.|.+++||.+++|..+. .++++|+|++.+++++||++++++|+++++
T Consensus 299 ~~~~~~~~~~~~L~~~~gI~~~~g~~~~--------~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 299 PEGVDGDEVVRRLMKRYNIEIAGGLGPT--------AGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred CCCCCHHHHHHHHHHhCCEEEecccccc--------cCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 5 45678999999987799998876331 256999999999999999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=299.65 Aligned_cols=354 Identities=14% Similarity=0.128 Sum_probs=274.1
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeC-ChhHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK-NATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~-g~t~a~~~ 144 (458)
+..+||+.|..+++|..+++++.+... +..+++..+.+.++++|+.+++++|+++.++|+|++ |+|.+++.
T Consensus 11 ~~~~~f~~Gp~~~~~~~v~~a~~~~~~--------~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~ 82 (378)
T PRK03080 11 PADPRFSSGPCKKRPGWQLEALADALL--------GRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEM 82 (378)
T ss_pred CCCCCcCCCCcCCChHHHHHHHHhhhc--------ccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHH
Confidence 457899999988888889999886532 222334578899999999999999996555898875 99999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHH-HHHHcCC-eEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL-VAQKTGA-NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~a~~~g~-~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
++.++ +++++.+++...+|++. |.. ++++.|+ +++.++.++++.+|+++++ . +++|+++|.+|.||
T Consensus 83 ~~~~l----~~~~~~~vi~~g~f~~~---~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~----~-~~~V~~~h~~t~tG 150 (378)
T PRK03080 83 ALWSL----LGARRVDHLAWESFGSK---WATDVVKQLKLEDPRVLEADYGSLPDLSAVD----F-DRDVVFTWNGTTTG 150 (378)
T ss_pred HHHhc----CCCCcceEEEeCHHHHH---HHHHHHhhcCCCCceEeccCCCCCCCHhhcC----C-CCCEEEEecCCccc
Confidence 99988 55433344445667663 454 4467799 9999998777777877643 2 56799999999999
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCC-CCCceeEEEEeccccccCCCccccCcceE
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~~~~~~l~~~~~g~~~~~ 301 (458)
...|+++|++ |++|+++++|++|++|..|+++++ .|++++|.||++ ||+|+|+++++++.++.+.+...+|...
T Consensus 151 ~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~- 225 (378)
T PRK03080 151 VRVPVARWIG--ADREGLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIP- 225 (378)
T ss_pred eeccchhhcc--ccCCCeEEEecccccccCCCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCc-
Confidence 9999999999 889999999999999999999987 799999999965 6899999999999998888776655421
Q ss_pred eeecCCCC-CCCCCCccC---CCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc
Q 012718 302 DVFLDHST-FADPPSRFE---AGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH 376 (458)
Q Consensus 302 ~~~~~~~~-~~~~~~~~~---~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~ 376 (458)
.+.+... +...+.+++ .+|++...+.++.++++++.+. |++++.+|.+++++++.+.|+++++++++.+.+.
T Consensus 226 -~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~-- 302 (378)
T PRK03080 226 -KFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPA-- 302 (378)
T ss_pred -hhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCcc--
Confidence 1111111 011222344 3567777888889999999998 8999999999999999999999977777654221
Q ss_pred CccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 377 VQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 377 ~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.+...+++|++++ ....++...+.++ +|.++.|.++. ..+.+|+|++.|++.+||++++++|++++++
T Consensus 303 ~~s~~i~~~~~~~~~~~~~~~~~~~l~~~-~i~v~~g~~~~--------~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 373 (378)
T PRK03080 303 TRSNTSVTLDFVDAQAAVDAAAVAKLLRE-NGAVDIEPYRD--------APNGLRIWCGPTVEPADVEALTPWLDWAFER 373 (378)
T ss_pred ccCccEEEEEcCCchHHHHHHHHHHHHHc-CCeeccccccC--------CCCcEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 1223589998886 2234577777777 88888776542 1478999999999999999999999999887
Q ss_pred hhc
Q 012718 454 FNV 456 (458)
Q Consensus 454 ~~~ 456 (458)
.+.
T Consensus 374 ~~~ 376 (378)
T PRK03080 374 LKA 376 (378)
T ss_pred Hhh
Confidence 664
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=289.07 Aligned_cols=343 Identities=17% Similarity=0.211 Sum_probs=262.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC-CcEEEeCChhHHHHHHHHHcCC
Q 012718 73 NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVAYSWGL 151 (458)
Q Consensus 73 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~a~~~~~~~l~~ 151 (458)
+.++...++.+.+++.... . .....+.+.++++|+.+++++|+++. +.|++|+|+|++++.++.++
T Consensus 8 ~pgp~~~~~~v~~~~~~~~----~-------~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l-- 74 (363)
T TIGR02326 8 TPGPLTTSRTVKEAMLFDW----C-------TWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA-- 74 (363)
T ss_pred cCCCCCCCHHHHHHhCCCC----C-------CCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc--
Confidence 3344455666666654321 1 11245778899999999999999764 36999999999999999988
Q ss_pred CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC--CceEEEEecccCcCcccccHHH
Q 012718 152 SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 152 ~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
+.+|+++++..+++++. .+..++++.|++++.++.++++.+|++++++.++. +++++++++++|+||.+.|+++
T Consensus 75 --~~~~~~vlv~~~~~~~~--~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~ 150 (363)
T TIGR02326 75 --VPKDGKLLVVINGAYGA--RIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEA 150 (363)
T ss_pred --CCCCCeEEEEeCChhhH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHH
Confidence 56777766655554433 23566788899999999988888999999999875 4578899999999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeec--C
Q 012718 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL--D 306 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~--~ 306 (458)
|.++||++|+++++|++|++|..++++.++++|++++|+|| ++||.|+|+++++++.++.+.+...+... +... .
T Consensus 151 I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~--~~~~~~~ 228 (363)
T TIGR02326 151 VAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSL--DLYDQWR 228 (363)
T ss_pred HHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceee--cHHHHHH
Confidence 99999999999999999999999999999999999999999 56899999999999877665432111000 0000 0
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEE
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCS 384 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~ 384 (458)
...+.....+| |++...+.++..+++.+... +++++.+++.++++++.+.|+++ ++++..+.. .+++ +.+
T Consensus 229 ~~~~~~~~~~f---t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----~~~~~~~~ 300 (363)
T TIGR02326 229 CMEDNHGKWRF---TSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDE----IQSPIITS 300 (363)
T ss_pred HHhccCCCCCC---CCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcc----cCCceEEE
Confidence 00011112233 56888899999999887665 68999999999999999999888 777765432 2344 567
Q ss_pred EEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 385 FNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 385 ~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
|.++. .+..++.+.|.++ ||.+++|..+ ..+++||++..+++.+|++++++.|++++.
T Consensus 301 ~~~~~~~~~~~~~v~~~L~~~-gi~v~~g~~~---------~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 301 FYSPEDPDYRFADFYQRLKEQ-GFVIYPGKVS---------QVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred EECCCCCCCCHHHHHHHHHHC-CEEEECCcCC---------CCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 88774 4567889999988 9999887532 146899998778999999999999998864
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=281.72 Aligned_cols=335 Identities=18% Similarity=0.203 Sum_probs=265.2
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcc---hhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCC-hhHHHHHHHHHcCCCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIH---FLSAKATDEYELARKKVAAFINASDSGEIVFTKN-ATEAINLVAYSWGLSN 153 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g-~t~a~~~~~~~l~~~~ 153 (458)
+.|+.+++++.+++...+ +.+++.+ +++..+.+.++++++.++++++.+.+++|+|++| ||.|++.++.++
T Consensus 2 ~~p~~v~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl---- 76 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNL---- 76 (349)
T ss_pred CCCHHHHHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc----
Confidence 589999999999998776 7776655 4455677999999999999999865557877755 999999999998
Q ss_pred CCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC----CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHH
Q 012718 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD----ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 154 ~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~----~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
+.+|+++++...+..+. .|..++++.|+ +..+..++. ..+|+++++ +++++++|.++|..|.||...|
T Consensus 77 ~~~~~~~l~i~~G~fg~--r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~--- 148 (349)
T TIGR01364 77 LAEGKVADYIVTGAWSK--KAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR--- 148 (349)
T ss_pred CCCCCeEEEEECCHHHH--HHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc---
Confidence 56899998888888777 45889999999 777775532 234666554 4568899999999999999887
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCCC
Q 012718 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHST 309 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 309 (458)
++++.++++++||+++++|..|++++++ |++++|.||++||+|+|+++++++.++++.+..... .+
T Consensus 149 --~l~~~~~~l~iVDavss~g~~~id~~~~--d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~----------~~ 214 (349)
T TIGR01364 149 --ELPDVKNAPLVADMSSNILSRPIDVSKF--GLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSM----------LN 214 (349)
T ss_pred --eecccCCCeEEEEccccccCccCCHHHc--cEEEEecccccCCCceEEEEECHHHHhhcccCCCCc----------ch
Confidence 6777889999999999999999999875 599999999889999999999999988877632110 01
Q ss_pred CCC-CCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEEEEE
Q 012718 310 FAD-PPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALCSFN 386 (458)
Q Consensus 310 ~~~-~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v~~~ 386 (458)
|.. .......|||+...++++.++|+++.+. |++++.++.+++++++.+.|++++|+......+ ..++ .+++|.
T Consensus 215 ~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~---~~rs~~v~sf~ 291 (349)
T TIGR01364 215 YKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDP---RNRSRMNVVFT 291 (349)
T ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCH---HHcCCeEEEEe
Confidence 110 0012234899999999999999999998 799999999999999999999998765443221 1235 578999
Q ss_pred eCCCC-hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 387 VENIH-PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 387 ~~~~~-~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+++.. ..++...+.++ |+.+.+|.. ..+.+|+|+..|++.+|||+++++|++++++
T Consensus 292 ~~~~~~~~~~~~~~~~~-Gi~~~~~~~----------~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 292 LGNEELEKRFLKEAEER-GLVSLKGHR----------SVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred cCChhHhHHHHHHHHHC-CCcccCCcc----------ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 88541 25565666666 996665542 1468999999999999999999999987654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=287.32 Aligned_cols=341 Identities=15% Similarity=0.157 Sum_probs=257.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhh---hHHHHHHHHHHHHHHHHcCCCCCCcEEEeCC-hhHHHHHHHHH
Q 012718 73 NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS---AKATDEYELARKKVAAFINASDSGEIVFTKN-ATEAINLVAYS 148 (458)
Q Consensus 73 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g-~t~a~~~~~~~ 148 (458)
+.++.+.|+.|.+++.+++.... +++++.+..+ ..+.+.++++|+.+++++|++.+++|+||+| +|++++.++.+
T Consensus 4 ~pGp~~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~ 82 (355)
T cd00611 4 SAGPAALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLN 82 (355)
T ss_pred CCCCCCCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHh
Confidence 34666899999999999997766 7777777666 5677999999999999999865558999977 99999999999
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCC-C-HHHHHHhhcCCceEEEEecccCcCccccc
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESP-D-LDKLKEMLSRKTKLVVIHHISNMLASILP 226 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~-d-~~~l~~~l~~~~~~v~~~~~~n~tG~~~~ 226 (458)
+.. ..++++.|++...++ .+..++++.|++++.++.++++.. + ++..+..+++++++|+++|.+|.||...+
T Consensus 83 l~~-~~~~~~~i~~g~~~~-----~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~ 156 (355)
T cd00611 83 LLG-DKGTADYVVTGAWSA-----KAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD 156 (355)
T ss_pred cCC-CCCeEEEEECCHHHH-----HHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc
Confidence 821 123566665533222 224477888999999998655322 4 33333456778999999999999999854
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
++++.+|++++||++|++|+.|+|+++++ +++.|.||++||+|+|+++++++.++++.+...+..
T Consensus 157 -----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~-------- 221 (355)
T cd00611 157 -----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSML-------- 221 (355)
T ss_pred -----eecccCCCeEEEEccccccCCCCCHHHhC--EEEeecccccCCCceEEEEECHHHHhhcccCCCCcc--------
Confidence 45666999999999999999999998865 555779999999999999999998887776432110
Q ss_pred CCCCCC-CCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEE
Q 012718 307 HSTFAD-PPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALC 383 (458)
Q Consensus 307 ~~~~~~-~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v 383 (458)
.+.. .......||||+..++++.++++++.+. |++++.++.+++++++.+.|+++||+......+ ..+. .++
T Consensus 222 --~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~---~~rs~~vv 296 (355)
T cd00611 222 --NYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDK---RARSRMNV 296 (355)
T ss_pred --cHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCH---HHcCceEE
Confidence 0100 0111226899999999999999999998 799999999999999999999998852111111 1345 469
Q ss_pred EEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 384 SFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 384 ~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+|++++. ...++...+.+. |+....+.. ..+.+|+|++.|+|.+||++++++|+++.
T Consensus 297 sf~~~~~~l~~~~~~~~~r~-G~~~~~~~~----------~~g~vR~S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 297 PFRLGKEELEKEFLKEAEAA-GMIGLKGHR----------SVGGIRASIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred EEEcCChhhhHHHHHHHHHC-CCcccCCCc----------ccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 9998874 113444455545 886444431 24789999999999999999999999853
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=253.80 Aligned_cols=375 Identities=21% Similarity=0.249 Sum_probs=306.4
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHH-HHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLK-ALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS 127 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~ 127 (458)
...|+.|.. .++.|||+.++.|..|..+.. ..+...++|.....+.+......+...-+.+-..+|.++|+.
T Consensus 20 ~~lr~~f~l-------p~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~ 92 (407)
T COG3844 20 AKLRDRFAL-------PGGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGAR 92 (407)
T ss_pred hhhHhhccC-------CCCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCC
Confidence 345777866 389999999999988854444 444445555555444444334557777788999999999999
Q ss_pred CCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcC-CCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc
Q 012718 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS 206 (458)
Q Consensus 128 ~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~-~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~ 206 (458)
+. +++++.+++--+..++.+.- ..++|+.|++++ .+|++..+.+..+++..|.. .+-.+.+.++++++.++
T Consensus 93 ~~-Evvv~dtts~nl~k~L~aal--r~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~-----~~~~~~~~P~~~~~~~~ 164 (407)
T COG3844 93 AG-EVVVTDTTSINLFKVLAAAL--RPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG-----YDLEGVIAPRALEEAIT 164 (407)
T ss_pred CC-ceEEeCCcchHHHHHHHHHh--ccCCCceEEeecCCCCCcchhhhcchhhhhccc-----ccceeeeChHHHHHhhc
Confidence 87 89999888877777766542 355677777765 57888888888877766643 22234457789999999
Q ss_pred CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCC--CCCceeEEEEec
Q 012718 207 RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKS 284 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~--gp~g~G~l~~~~ 284 (458)
+++.+|++++++..||+.+++.+|.+++|++|+++++|-+|+.|.+|+++...++||-+++.||.+ ||.+.+++++.+
T Consensus 165 dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~ 244 (407)
T COG3844 165 DDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAP 244 (407)
T ss_pred cceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEecc
Confidence 999999999999999999999999999999999999999999999999999999999999999943 466699999999
Q ss_pred cccccCCCccccCcceEeeecCCCCC--CCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTF--ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
+..+...+...||-.....+.....| .+...+|..||++.....++..+|+...+.++.+++++...+.+++.+.++.
T Consensus 245 ~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa 324 (407)
T COG3844 245 RHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEA 324 (407)
T ss_pred ccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHh
Confidence 99888877777777666666555555 4556899999999999999999999999999999999999999999999976
Q ss_pred C-C--CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHH
Q 012718 363 I-P--NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH-FYNTKE 438 (458)
Q Consensus 363 ~-~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~ 438 (458)
. + ++++..|.. ++.+|..|++..+ ...++.+.|.++ ||... +..++.+|+.+. +|++.+
T Consensus 325 ~~~~~~l~l~tPr~--~~~rGsqvS~~hp--~~~~V~qaLi~r-GVigD------------~R~P~vlRfgftPlY~~~~ 387 (407)
T COG3844 325 RCEYYGLTLVTPRA--HEERGSQVSLYHP--HGYQVMQALIDR-GVIGD------------FREPDVLRFGFTPLYVSFV 387 (407)
T ss_pred ccccCCcEEeccch--hhhccceeeEecC--cHHHHHHHHHHc-Ccccc------------ccCCCeeeecCccceechh
Confidence 5 2 677777754 3788999999988 688999999999 99864 233889999986 889999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 012718 439 DVDEFIHALNETVSFFN 455 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~ 455 (458)
||...++.|++++++..
T Consensus 388 DVw~AV~~L~evL~t~a 404 (407)
T COG3844 388 DVWDAVDALEEVLDTLA 404 (407)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998764
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=275.61 Aligned_cols=338 Identities=20% Similarity=0.272 Sum_probs=260.3
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC------CCCcEEEeCChh
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS------DSGEIVFTKNAT 139 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~------~~~~v~~t~g~t 139 (458)
++|.|+.|.+. +.|+.+.+++.+.+..... +.. ..+...++|+++++++... ++++|++|+|++
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~--~Y~-------~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~ 99 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGT--HYT-------PSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAK 99 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhcccC--CCC-------CCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHH
Confidence 68999999887 6788899999988775321 000 2334456777777666433 334699999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC---CCCCCCHHHHHHhhcCCceEEEEec
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---DDESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~---~~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
+|+..++.++ +++||+|++++|.|++ +....+..|++++.++++ .++.+|++.+++.+++++++|++++
T Consensus 100 ~al~~~~~a~----~~pGDeVlip~P~Y~~----y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~ 171 (393)
T COG0436 100 EALFLAFLAL----LNPGDEVLIPDPGYPS----YEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNS 171 (393)
T ss_pred HHHHHHHHHh----cCCCCEEEEeCCCCcC----HHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeC
Confidence 9999999998 8999999999999994 466667789999999975 3688999999999999999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccC----CcccC---CCCC-CCCcEEEecccCCCCCCc--eeEEEEe
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSV----PHMVV---DVQG-LDADFLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~----g~~~~---~~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
|+||||.+++ +++|+++|++||++||.|++|.- +..+. .+.. ....+.+.|+||.++.+| +||++++
T Consensus 172 P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~ 251 (393)
T COG0436 172 PNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGP 251 (393)
T ss_pred CCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecC
Confidence 9999999999 78999999999999999999982 21111 2222 245788889999999999 9999999
Q ss_pred -ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHh
Q 012718 284 -SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-IGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 284 -~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~-~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
+++++.+..+.. ....+++...+.+...+|+.-.. ..++..++..+++++.+.+.|.
T Consensus 252 ~~~l~~~~~~~~~---------------------~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~ 310 (393)
T COG0436 252 PEELIAALRKLKS---------------------YLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALN 310 (393)
T ss_pred hHHHHHHHHHHHH---------------------hcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555542221 11224455555566667665422 2256666889999999999999
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
+++|+.+..++.. +++++.+++. .+..+++..|.+++||.+.||..+..+ ...+++|+|+. .+.+++
T Consensus 311 ~~~g~~~~~~p~G-----a~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~-----~g~~~vRis~~--~~~~~l 378 (393)
T COG0436 311 EIGGLSVVKPPEG-----AFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEP-----PGEGYVRLSLA--TSEETL 378 (393)
T ss_pred hcCCeeeccCCCe-----eEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCC-----CCCCeEEEEEe--cCHHHH
Confidence 9988998874432 5688888886 578899999988879999999854321 12589999999 566999
Q ss_pred HHHHHHHHHHHHhh
Q 012718 441 DEFIHALNETVSFF 454 (458)
Q Consensus 441 ~~l~~~l~~~~~~~ 454 (458)
++.++++.++++..
T Consensus 379 ~~a~~rl~~~~~~~ 392 (393)
T COG0436 379 EEALRRLARFLAEY 392 (393)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=276.57 Aligned_cols=345 Identities=17% Similarity=0.208 Sum_probs=265.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC-CcEEEeCChhHHHHHHHHHcCC
Q 012718 73 NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVAYSWGL 151 (458)
Q Consensus 73 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~a~~~~~~~l~~ 151 (458)
..++..+++.+.+++.+.. . .....+.+..+++++.+++++|+++. +.+++++|+|++++.++.++
T Consensus 10 ~pgP~~~~~~~~~a~~~~~----~-------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l-- 76 (368)
T PRK13479 10 TPGPLTTSRTVREAMLRDW----G-------SWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL-- 76 (368)
T ss_pred cCCCCCCCHHHHHHhCCCC----C-------CCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc--
Confidence 3344456677666664432 0 11233556889999999999999753 36889999999999999998
Q ss_pred CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC--CceEEEEecccCcCcccccHHH
Q 012718 152 SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 152 ~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
..+|+.|++..+++++. .+...++..|++++.++.++++.+|++++++.+++ +++++++++++|+||...|+++
T Consensus 77 --~~~~~~vlv~~~~~~~~--~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~ 152 (368)
T PRK13479 77 --VPRDGKVLVPDNGAYGA--RIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDE 152 (368)
T ss_pred --cCCCCeEEEEeCCchHH--HHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHH
Confidence 56888898888777654 23567788899999999987788899999999865 4578999999999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCCC
Q 012718 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 308 (458)
|.++|+++|+++++|++|++|..++++.++++|++++|+|| ++||.|+|+++++++.++.+......+.. ......
T Consensus 153 i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~---~~~~~~ 229 (368)
T PRK13479 153 IAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSL---DLYDQW 229 (368)
T ss_pred HHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeee---cHHHHH
Confidence 99999999999999999999988889888899999999999 56899999999999887776543221100 000000
Q ss_pred CC--CCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEE
Q 012718 309 TF--ADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCS 384 (458)
Q Consensus 309 ~~--~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~ 384 (458)
.+ .....+| |++...++++.++++.+.+. ++++..+++.++++++.+.|+++ |+++..++. .+.+ ++.
T Consensus 230 ~~~~~~~~~~~---t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----~~~~~~~~ 301 (368)
T PRK13479 230 AYMEKTGQWRF---TPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAE----IQSPIIVT 301 (368)
T ss_pred hhhcccCCCCC---CCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCch----hcCceEEE
Confidence 00 1112223 78888899999999987654 58888899999999999999988 877654431 1233 566
Q ss_pred EEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 385 FNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 385 ~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
|.++. .+..++.+.|.++ ||.+++|..+ ..+++|++...+++.+|++++++.|++++++..
T Consensus 302 ~~~~~~~~~~~~~l~~~L~~~-gi~v~~g~~~---------~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 302 FHAPADPAYDFKEFYERLKEQ-GFVIYPGKLT---------QVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred EECCCCCCcCHHHHHHHHHHC-CEEEecCCCC---------CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 76653 3567899999988 9999876421 145899998777999999999999999987653
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=275.80 Aligned_cols=344 Identities=19% Similarity=0.193 Sum_probs=267.8
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcc---hhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEe-CChhHHHHHH
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIH---FLSAKATDEYELARKKVAAFINASDSGEIVFT-KNATEAINLV 145 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t-~g~t~a~~~~ 145 (458)
++-+.++.+.|+.+++++.+.+.+++ +.+.+.+ +++..+.+.++++++.+++++|.+.+++++++ +++|.+++.+
T Consensus 5 ~l~~pGP~~~p~~V~~a~~~~~~~~~-~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~ 83 (360)
T PRK05355 5 YNFSAGPAMLPEEVLEQAQQELLDWN-GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMV 83 (360)
T ss_pred eeccCCCCCCCHHHHHHHHHHhhccc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHH
Confidence 44567788999999999999986654 4444433 44556779999999999999998544456554 8999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHH-hhcCCceEEEEecccCcCcc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKE-MLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~-~l~~~~~~v~~~~~~n~tG~ 223 (458)
+..+ +.+|+++++...+..+. .|..++++.|.. ..+..++ .+..+..++++ .+++++++|.++|..|.||.
T Consensus 84 ~~nl----~~~g~~~l~i~~G~fg~--r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv 156 (360)
T PRK05355 84 PMNL----LGGGKKADYVDTGSWSK--KAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGT 156 (360)
T ss_pred HHhc----CCCCCeEEEEECCHHHH--HHHHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcceE
Confidence 9988 67888888888777766 458889999965 6666554 55556556655 78788999999999999999
Q ss_pred cc-cHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEe
Q 012718 224 IL-PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISD 302 (458)
Q Consensus 224 ~~-~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~ 302 (458)
.. |+.+| +|++++||+++++|+.+++++++ |++++|.||++||+|+|+++++++.++++.+... .
T Consensus 157 ~~~~i~~i------~g~l~vVDavss~g~~~idv~~~--d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~~-~----- 222 (360)
T PRK05355 157 EFHELPDT------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIP-S----- 222 (360)
T ss_pred ecCccccc------CCCcEEEEcCccccCccCCHHHc--cEEEEeccccccCCceEEEEECHHHHhhcccCCC-h-----
Confidence 98 67666 89999999999999999999886 5999999998899999999999999888776421 1
Q ss_pred eecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-
Q 012718 303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA- 380 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~- 380 (458)
+.+...+. ......+|||...++++.++|+++.+. |++++.++.+++++++.+.|++++.+..+.++ ..++
T Consensus 223 -~~~~~~~~--~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~----~~rs~ 295 (360)
T PRK05355 223 -MLDYKTHA--DNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAP----EDRSR 295 (360)
T ss_pred -HHHHHHHH--hcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCh----hhcCC
Confidence 11111110 112235899999999999999999999 89999999999999999999998533332221 1235
Q ss_pred cEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 381 ALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 381 ~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.+++|.+++. ...++...+.++ |+.+..+.. ..+.+|+|+..|+|.+||++|++.|++++++
T Consensus 296 ~v~sf~~~~~~~~~~~~~~~~~~-Gi~~~~~~~----------~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 296 MNVPFTLADEELDKKFLAEAKAA-GLVGLKGHR----------SVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred cEEEEEcCChHHHHHHHHHHHHC-CCcccCCCC----------ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 5799998863 234565666666 888755542 1478999999999999999999999998753
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=263.73 Aligned_cols=350 Identities=20% Similarity=0.263 Sum_probs=291.6
Q ss_pred ecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcC
Q 012718 71 LDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWG 150 (458)
Q Consensus 71 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~ 150 (458)
|-+.++.+.++.+++++..- ..++++..+...+.++++.+...++.+..+.++++++||.+++.++.++
T Consensus 8 Ll~PGP~~v~~~V~~am~~~----------~~~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl- 76 (383)
T COG0075 8 LLTPGPVPVPPRVLLAMARP----------MVGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASL- 76 (383)
T ss_pred eeeCCCCCCCHHHHHHhcCC----------CCCCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhc-
Confidence 44556677888888888653 2335567789999999999999999986446788899999999999998
Q ss_pred CCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC--CceEEEEecccCcCcccccHH
Q 012718 151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 151 ~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG~~~~l~ 228 (458)
++|||+|++...+..+. .|..+++++|++++.+...+.-.+|++++++.|++ +.++|.+.|..++||...|++
T Consensus 77 ---~~pgdkVLv~~nG~FG~--R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 77 ---VEPGDKVLVVVNGKFGE--RFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred ---cCCCCeEEEEeCChHHH--HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 88999999999998887 67999999999999999998888999999999985 568999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
+|+++|++||.++|||++.++|..++++++|++|+++++.+| +.+|+|.|++.++++.++.+...... ..|++.
T Consensus 152 ~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~-----~~ylDL 226 (383)
T COG0075 152 EIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHP-----SFYLDL 226 (383)
T ss_pred HHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCC-----ceeecH
Confidence 999999999999999999999999999999999999999999 55699999999999888777643322 223343
Q ss_pred CCCCCCC-C-ccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEE
Q 012718 308 STFADPP-S-RFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCS 384 (458)
Q Consensus 308 ~~~~~~~-~-~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~ 384 (458)
..|...- . +....||+...++++..+|+.+.+.|+++..++.+++++++++.+.++ |++++..+ ..+++ +.+
T Consensus 227 ~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~----~~~s~tvta 301 (383)
T COG0075 227 KKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADP----ERRSPTVTA 301 (383)
T ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCc----ccCCCceEE
Confidence 2221111 1 455789999999999999999999999999999999999999999999 99988733 23455 667
Q ss_pred EEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 385 FNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 385 ~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+.+| +++..++...+.++||+.+..|.-. + ....+||+...+.+.+|+...+.+|+.+++++
T Consensus 302 ~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~-------l-~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~ 364 (383)
T COG0075 302 IKVPEGVDDKKVRRALLKEYGVEIAGGQGP-------L-KGKIFRIGHMGNVRPEDVLAALAALEAALREL 364 (383)
T ss_pred EECCCCCCcHHHHHHHHHhCCEEecccccc-------c-CccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence 7777 4555566667777879998776421 0 14689999776889999999999999999875
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=274.00 Aligned_cols=340 Identities=19% Similarity=0.249 Sum_probs=259.0
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCC-cEEEeCChhHHHHHHHHHcCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSG-EIVFTKNATEAINLVAYSWGLSNL 154 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-~v~~t~g~t~a~~~~~~~l~~~~~ 154 (458)
+..+++.+.+++.+.. + . ....+.+..+++|+.+++++|+++.+ .|++++|+|+++..++.++ +
T Consensus 7 p~~~~~~~~~~~~~~~-----~---~---~~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~----~ 71 (355)
T TIGR03301 7 PLSTSATVRDAMLVDW-----C---H---WDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSL----V 71 (355)
T ss_pred CCCCCHHHHHHhhhhc-----c---C---CCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhc----c
Confidence 3456667777766521 1 1 11234577889999999999998653 6788999999999999987 5
Q ss_pred CCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC--CceEEEEecccCcCcccccHHHHHH
Q 012718 155 KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNMLASILPIEEIVH 232 (458)
Q Consensus 155 ~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG~~~~l~~i~~ 232 (458)
.+++++++..+.+++. .+..+++..|.+++.++.++++.+|++++++.+++ +++++++++++|+||.+.|+++|.+
T Consensus 72 ~~~~~vi~~~~~~~~~--~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~ 149 (355)
T TIGR03301 72 PRDGKLLVLINGAYGE--RLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAK 149 (355)
T ss_pred CCCCeEEEECCCchhh--HHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHH
Confidence 6677776666555433 23566788899999999887788899999999874 4578889999999999999999999
Q ss_pred HHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCC
Q 012718 233 WSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFA 311 (458)
Q Consensus 233 l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 311 (458)
+|+++|+++|+|+++++|..++++..++.|++++|+||+ +|+.|+|+++++++.++.+......+.. +.... ..+.
T Consensus 150 l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~ 226 (355)
T TIGR03301 150 VARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYL--DLYDQ-WAYM 226 (355)
T ss_pred HHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCcee--eHHHH-HHHh
Confidence 999999999999999999888888888999999999995 6788999999999887765521111000 00000 0000
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeCC
Q 012718 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVEN 389 (458)
Q Consensus 312 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~ 389 (458)
.. .+...+|++...+.++..+++.+.+.| +++..++++++++++.+.|+++ ++++..+.. .+++ ++++.++.
T Consensus 227 ~~-~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~----~~~~~~~~~~~~~ 300 (355)
T TIGR03301 227 EK-TGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPER----WQSPIIVSFLYPD 300 (355)
T ss_pred hh-cCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCC----CCCCcEEEEECCC
Confidence 00 122245788889999999999987776 8999999999999999999887 777654432 1234 67888874
Q ss_pred ---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 390 ---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 390 ---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.+..++.+.|.++ ||.+.++..+ . .+++||+++.+++.+|++++++.|++++
T Consensus 301 ~~~~~~~~~~~~l~~~-gi~i~~~~~~--------~-~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 301 DPDFDFDDFYQELKER-GFVIYPGKLT--------L-ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred CCcchHHHHHHHHHHC-CEEEECCccc--------c-ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 3556899999988 9999887522 1 3689999988899999999999998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=269.74 Aligned_cols=351 Identities=15% Similarity=0.174 Sum_probs=262.9
Q ss_pred EEecCCC--------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC-CcEEE--eCC
Q 012718 69 VYLDNAA--------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS-GEIVF--TKN 137 (458)
Q Consensus 69 i~l~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~v~~--t~g 137 (458)
+|+|++. ++++.+.+.+.+.+++.....|++. . +...+.++++++.+++++|+++. +++.+ |+|
T Consensus 35 iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np~s----~-~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsG 109 (431)
T TIGR01788 35 LSLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDE----Y-PQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIG 109 (431)
T ss_pred hhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCccc----C-ccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEech
Confidence 5566665 6677777888888887654444432 1 22348888999999999999832 24544 899
Q ss_pred hhHHHHHHHHHcCCC---C-CC-----CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcC
Q 012718 138 ATEAINLVAYSWGLS---N-LK-----SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSR 207 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~---~-~~-----~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~ 207 (458)
+|+|+++++.+.+.. . .+ .+..|+++..+|++ |.+.++..|++++.+|++++ +.+|+++|++.|++
T Consensus 110 gTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~s----v~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~ 185 (431)
T TIGR01788 110 SSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVC----WEKFARYFDVELREVPMDPGRYVIDPEQVVEAVDE 185 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHH----HHHHHHHcCceeEEEecCCCceeeCHHHHHHHHhh
Confidence 999999998765210 0 01 12479999999994 56777778999999999876 58999999999999
Q ss_pred CceEEEEecccCcCcccccHHHHHHHHHhc------CcEEEEecccc-------CCcccCCCCCCCCcEEEecccCC-CC
Q 012718 208 KTKLVVIHHISNMLASILPIEEIVHWSHDV------GAKVLVDACQS-------VPHMVVDVQGLDADFLVASSHKM-CG 273 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~------~~~vivD~a~~-------~g~~~~~~~~~~~d~~~~s~~K~-~g 273 (458)
++.+|++++++|.||.+.|+++|+++|+++ |+++++|++|+ .+..+.++...++|.++.|+||+ +|
T Consensus 186 ~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~ 265 (431)
T TIGR01788 186 NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLV 265 (431)
T ss_pred CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCC
Confidence 999999999999999999999999999999 99999999999 44455556666789999999996 49
Q ss_pred CCceeEEEEecc--ccccCC---CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Q 012718 274 PTGIGFLFGKSD--LLSAMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY 348 (458)
Q Consensus 274 p~g~G~l~~~~~--~~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~ 348 (458)
|.|+|+++++++ +.+.+. ++.. +... . ..+ .++.+....++.+..+..+...|+.++.++
T Consensus 266 P~g~G~l~~r~~~~l~~~~~~~~~yl~-~~~~--------~-----~t~-~~sR~g~~al~~w~~l~~lG~~G~~~i~~~ 330 (431)
T TIGR01788 266 YPGVGWVIWRDEEALPEELIFHVNYLG-GDEP--------T-----FTL-NFSRPANQVIAQYYNFLRLGREGYRKIMQN 330 (431)
T ss_pred CCCcEEEEEeChHHcchhheecccccC-CCCC--------C-----cce-ecCchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 999999999885 212221 1211 1100 0 011 123333344556677777778899999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCC
Q 012718 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV 423 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~ 423 (458)
+.++++++.+.|++.++++++.+.+ +.++++|++.+ .+..++.+.|.++ |+.+..-. .| ..++.
T Consensus 331 ~~~la~~l~~~L~~~~~~el~~~~~-----~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~---~p--~~~~~ 399 (431)
T TIGR01788 331 SLDVARYLAEEIAKLGPFEIISDGS-----GIPLVAFKLKDDADPGYTLYDLSHRLRER-GWIVPAYT---LP--KNAED 399 (431)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCCC-----CceEEEEEeCCCCCCCcCHHHHHHHHHHC-CCcccCCC---CC--CccCC
Confidence 9999999999999999999987632 28899999974 5667899999988 98652111 00 01222
Q ss_pred CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 424 NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 424 ~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
...+|+++....+.+.++.+++.|++++.++
T Consensus 400 ~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 400 IVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 4579999988899999999999999998764
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=267.61 Aligned_cols=337 Identities=15% Similarity=0.114 Sum_probs=263.1
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCC-cEEEeCChhHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSG-EIVFTKNATEAINLVA 146 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-~v~~t~g~t~a~~~~~ 146 (458)
..|+.+......+...++.+..+......++. ..+..+....+..+++++.+++++|+++.+ ..+||+|||+++..++
T Consensus 23 ~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~-~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~ 101 (380)
T PRK02769 23 YFNVGYPEAADFDYSALKRFFSFSINNCGDPY-SKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGC 101 (380)
T ss_pred hcccCCCchhhcCHHHHHHHHHhhhccCCCcc-ccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHH
Confidence 35566666665655666666666655445553 233334456778889999999999998653 2589999999988776
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC---ceEEEEecccCcCcc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK---TKLVVIHHISNMLAS 223 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~v~~~~~~n~tG~ 223 (458)
...+ .+.+++.|++++.+|+|+. +.++..|.+.+.|+.+++|.+|+++|++.++++ +.+|++++++|.+|.
T Consensus 102 ~~ar--~~~~~~~ii~s~~~H~Sv~----ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~ 175 (380)
T PRK02769 102 YLAR--ELFPDGTLYYSKDTHYSVS----KIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGA 175 (380)
T ss_pred HHHH--HhCCCcEEEeCCCceehHH----HHHHHcCCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcc
Confidence 5542 2456789999999999764 455666888889998888999999999999876 899999999999999
Q ss_pred cccHHHHHHHHHhcC---cEEEEeccccCCccc-------CCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCC
Q 012718 224 ILPIEEIVHWSHDVG---AKVLVDACQSVPHMV-------VDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPP 292 (458)
Q Consensus 224 ~~~l~~i~~l~~~~~---~~vivD~a~~~g~~~-------~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~ 292 (458)
+.|+++|+++|+++| +++++|++|+.+.+| +++.. ++|++++|+||+++ |.|+|+++++++.++.+.+
T Consensus 176 idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~ 254 (380)
T PRK02769 176 IDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISV 254 (380)
T ss_pred cCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhccc
Confidence 999999999999998 699999999998885 66655 89999999999766 9999999999987665542
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
. . .|.........||.+....++++++++++...|++++.+++.++++++.+.|++. ++++...+
T Consensus 255 ~-~-------------~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p 319 (380)
T PRK02769 255 D-V-------------DYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNP 319 (380)
T ss_pred C-c-------------cccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCC
Confidence 1 0 1111112233789998899999999999999999999999999999999999886 88877654
Q ss_pred CCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
. ..+|+|+.+. .++. + |..+.+- ++++|+.+.+.++.+.||.+++.|.+.+.
T Consensus 320 ~------~~~v~f~~~~---~~~~-----~-~w~l~~~-------------~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 320 N------SITVVFPCPS---ERIW-----K-KWHLATS-------------GNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred C------ceEEEEcCCC---HHHH-----h-CeeEccc-------------CCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 2 6788887663 2222 3 5544321 35899999988999999999999998876
Q ss_pred hhh
Q 012718 453 FFN 455 (458)
Q Consensus 453 ~~~ 455 (458)
...
T Consensus 372 ~~~ 374 (380)
T PRK02769 372 NPN 374 (380)
T ss_pred ccc
Confidence 543
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=265.81 Aligned_cols=345 Identities=20% Similarity=0.218 Sum_probs=256.4
Q ss_pred CCeEEecCC-CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNA-ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
...+++|.- -.||+++.+.+++.++.... .++..-.+..+.......+++++.+|+++|++ ++++++|+|+++..
T Consensus 18 ~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~---~~~~~~g~t~a~~~ 93 (387)
T PRK09331 18 EEFINLDPIQRGGILTPEARKALIEYGDGY-SVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD---EARVTHGAREGKFA 93 (387)
T ss_pred ccccccChhhcCCCCCHHHHHHHHHHHhcc-CCCcccccccccccChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHH
Confidence 344556543 56799999999999998532 33321133334444567889999999999996 67889999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC--CCCCCCCHHHHHHhhcC-------CceEEEEe
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--NDDESPDLDKLKEMLSR-------KTKLVVIH 215 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~--~~~~~~d~~~l~~~l~~-------~~~~v~~~ 215 (458)
++.++ +++||+|+++.++|.+.... ++..|++++.++. ++++.+|++++++.+++ ++++|+++
T Consensus 94 al~~l----~~~gd~Vlv~~~~h~s~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~ 165 (387)
T PRK09331 94 VMHSL----CKKGDYVVLDGLAHYTSYVA----AERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLT 165 (387)
T ss_pred HHHHh----cCCCCEEEECCCchHHHHHH----HHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEE
Confidence 99988 68999999999999987543 4667999999998 56788999999998863 68999999
Q ss_pred cccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCC-CCCceeEEEEeccccccCCCcc
Q 012718 216 HISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 216 ~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~~~~~~l~~~~ 294 (458)
+++|++|.+.|+++|.++||++|+++++|++|+.|..|++..++++|++++|+||++ +|.|+|+++++++.++.+....
T Consensus 166 ~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~ 245 (387)
T PRK09331 166 HVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTS 245 (387)
T ss_pred CCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhccccc
Confidence 999999999999999999999999999999999999989888889999999999965 5778999999998777665332
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
.++... ....+ .++.+....+++.++++.+.+. . ...++..++++++.+.|.+++|++++...+
T Consensus 246 ~~~~~~------------~~~~~-~~~~~~~~~~~~~aal~~~~~~-~-~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~- 309 (387)
T PRK09331 246 RKFGVK------------EVELL-GCTLRGAPLVTLMASFPHVVER-V-KRWDEEVKKARWFVDELEKIEGFKQLGEKP- 309 (387)
T ss_pred CCCccc------------ceeee-ceecCchHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhcCCCEEEeccCc-
Confidence 111100 00011 2233334455555666665543 2 344555778889999999999999885421
Q ss_pred CcCccccEEEEEeCCC---------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 375 EHVQRAALCSFNVENI---------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~---------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
...+++.+..+.+ +..++.+.|.++ ||...+. +....+|+.. ..++.+|++++++
T Consensus 310 ---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~~~~~-----------~~~~i~ri~~-~g~t~~di~~l~~ 373 (387)
T PRK09331 310 ---RNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKR-GIHGIKP-----------GATKEFKLST-YGLTWEQVEYVAD 373 (387)
T ss_pred ---CcCCeEEEeCCchhHHhhhccccchhHHHHHHHc-CceEEcc-----------CCceEEEEEe-ccCCHHHHHHHHH
Confidence 1255776765532 224688899887 9974211 1134456655 3379999999999
Q ss_pred HHHHHHHhh
Q 012718 446 ALNETVSFF 454 (458)
Q Consensus 446 ~l~~~~~~~ 454 (458)
+|+++++++
T Consensus 374 aL~~i~~~~ 382 (387)
T PRK09331 374 AFKEIAEKY 382 (387)
T ss_pred HHHHHHHhc
Confidence 999998764
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=269.46 Aligned_cols=338 Identities=17% Similarity=0.208 Sum_probs=250.5
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+.|.|+.+... ++++.+.+++.+++.....+ .+...+...++|+++++++|++++ +|++|+|+|+++..
T Consensus 28 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~y~~~~g~~~lr~~ia~~l~~~~~-~v~~~~g~t~al~~ 98 (380)
T PRK06225 28 KEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYC--------KYPPPEGFPELRELILKDLGLDDD-EALITAGATESLYL 98 (380)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCC--------CCCCCcchHHHHHHHHHhcCCCCC-cEEEeCCHHHHHHH
Confidence 678999987665 67888889988887632111 112234467899999999999876 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC---CCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND---DESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~---~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
++.++ +.+||.|++++|+|.. +...++..|++++.++++. ++.+|++.+++.++++++++++++++|||
T Consensus 99 ~~~~~----~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~Npt 170 (380)
T PRK06225 99 VMRAF----LSPGDNAVTPDPGYLI----IDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPL 170 (380)
T ss_pred HHHHh----cCCCCEEEEcCCCCcc----hHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCC
Confidence 99987 6789999999999983 3556677899999998742 35789999999999899999999999999
Q ss_pred ccccc---HHHHHHHHHhcCcEEEEecccc---CCcccCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCc
Q 012718 222 ASILP---IEEIVHWSHDVGAKVLVDACQS---VPHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 222 G~~~~---l~~i~~l~~~~~~~vivD~a~~---~g~~~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~ 293 (458)
|.+++ +++|.++|+++|+++|+|++|. .+..+...-.....+++.|++|++|++| +||+++++++++.+.+.
T Consensus 171 G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~ 250 (380)
T PRK06225 171 GSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSI 250 (380)
T ss_pred CcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHH
Confidence 99997 7889999999999999999985 2221111111245788889999989888 89999998887766543
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
..+ ..+.+.....++..+++..... ++++++..+++.+.+.+.|++++++.+...+.
T Consensus 251 ~~~----------------------~~~~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 307 (380)
T PRK06225 251 VIN----------------------DLGTNVIAQEAAIAGLKVKDEW-IDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPS 307 (380)
T ss_pred Hhc----------------------ccCCCHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHhCcCCccccCCC
Confidence 210 0122333333344444332222 45666777777888888998876654322222
Q ss_pred CCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
. ++++++.++ +.+..++.+.|.++ ||.+++|.+|... . .++++|++++ .++++++++++.|.+++
T Consensus 308 ~-----g~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~~~~~----~-~~~~iR~s~~--~~~e~l~~~~~~l~~~~ 374 (380)
T PRK06225 308 H-----GNMMVIDISEAGIDPEDLVEYLLER-KIFVRQGTYTSKR----F-GDRYIRVSFS--IPREQVEVFCEEFPDVV 374 (380)
T ss_pred C-----CeEEEEEcccccCCHHHHHHHHHHC-CEEEcCCcccCcC----C-CCceEEEEeC--CCHHHHHHHHHHHHHHH
Confidence 1 668888875 35778999999877 9999998755321 1 1569999998 47899999999999999
Q ss_pred Hhhhc
Q 012718 452 SFFNV 456 (458)
Q Consensus 452 ~~~~~ 456 (458)
+++++
T Consensus 375 ~~~~~ 379 (380)
T PRK06225 375 ETLRT 379 (380)
T ss_pred HHhhc
Confidence 98764
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=266.73 Aligned_cols=335 Identities=19% Similarity=0.204 Sum_probs=257.8
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
+|+... +++.+.+.+++.+++.....++. .+ .......+++++.+++++|.++. .+++++|+++++..++.++
T Consensus 24 ~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~la~~~g~~~~-~~~~~~ggt~a~~~a~~~~ 96 (371)
T PRK13520 24 ILSSMC-TEPHPIARKAHEMFLETNLGDPG--LF---PGTAKLEEEAVEMLGELLHLPDA-YGYITSGGTEANIQAVRAA 96 (371)
T ss_pred eeeeee-cCchHHHHHHHHHHHhcCCCCcc--cC---ccHHHHHHHHHHHHHHHhCCCCC-CeEEecCcHHHHHHHHHHH
Confidence 455544 44566677889888865322221 11 23456678899999999998765 7889999999999988766
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
.....+++++|++++++|.+ |...++..|++++.++.++++.+|++++++.+++++++|++.+++|+||.+.|+++
T Consensus 97 ~~~~~~~~~~vl~~~~~h~s----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~ 172 (371)
T PRK13520 97 RNLAKAEKPNIVVPESAHFS----FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPE 172 (371)
T ss_pred HhhccCCCceEEecCcchHH----HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHH
Confidence 32122467899999999984 56677788999999999888889999999999888888888888999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCccc-------CCCCCCCCcEEEecccCCC-CCCceeEEEEecc-ccccCC---CccccC
Q 012718 230 IVHWSHDVGAKVLVDACQSVPHMV-------VDVQGLDADFLVASSHKMC-GPTGIGFLFGKSD-LLSAMP---PFLGGG 297 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~~g~~~-------~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~~-~~~~l~---~~~~g~ 297 (458)
|.++|+++|+++++|++|+.+..+ +++...++|++++|.||+. +|.++|+++++++ .++.+. ++..+.
T Consensus 173 I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~ 252 (371)
T PRK13520 173 LSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSK 252 (371)
T ss_pred HHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcccCccccCC
Confidence 999999999999999999865432 3344457899999999964 4667887777554 555443 111100
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcC
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHV 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~ 377 (458)
......||++...++++..+++.+...|++++.++..++++++.+.|+++ ++++..++ .
T Consensus 253 ----------------~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~--- 311 (371)
T PRK13520 253 ----------------KQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEP-V--- 311 (371)
T ss_pred ----------------CCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCC-C---
Confidence 01112467777778889999998888788999999999999999999988 88743332 1
Q ss_pred ccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 378 QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 378 ~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
.+++++.++ +..++.+.|.++ ||.++... .+..+|+|+++++|++||+++++.|+++++
T Consensus 312 --~~~v~~~~~--~~~~v~~~L~~~-gi~v~~~~-----------~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 312 --LNIVAFDDP--NPDEVREKLRER-GWRVSVTR-----------CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred --ceEEEEecC--CHHHHHHHHHHC-CceeccCC-----------CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 568888876 577899999988 99887532 146899999999999999999999998765
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=263.26 Aligned_cols=320 Identities=18% Similarity=0.262 Sum_probs=244.6
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+++++.|..+..+ ++|+.+.+++.++......++. .. .+++|+.++++++++++ +|++|+|+++++.
T Consensus 18 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~----------~~-~~~lr~~ia~~~~~~~~-~i~~~~G~~~~l~ 85 (346)
T TIGR01141 18 GKEVIKLNSNENPFGPPPKAKEALRAEADKLHRYPD----------PD-PAELKQALADYYGVDPE-QILLGNGSDEIIE 85 (346)
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCC----------CC-HHHHHHHHHHHhCcChH-HEEEcCCHHHHHH
Confidence 4678999877655 6788899999988653322111 01 25799999999998765 8999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
.++.++ +++||+|++++|+|+ .+...++..|++++.+++++++.+|++.+++.+.+++++|++++++||||.
T Consensus 86 ~~~~~l----~~~gd~v~~~~p~y~----~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~ 157 (346)
T TIGR01141 86 LLIRAF----LEPGDAVLVPPPTYS----MYEISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGN 157 (346)
T ss_pred HHHHHh----cCCCCEEEEcCCCHH----HHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCC
Confidence 998887 678999999999987 445566778999999999888889999999998889999999999999999
Q ss_pred cccHHHHHHHHHhc--CcEEEEeccccCCcc---cCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccc
Q 012718 224 ILPIEEIVHWSHDV--GAKVLVDACQSVPHM---VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 224 ~~~l~~i~~l~~~~--~~~vivD~a~~~g~~---~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~ 295 (458)
.+|++++.++|+.+ |+++|+|++|+.-.. +.+ ....+.+++++|+||++|++| +|++++++++++.+.....
T Consensus 158 ~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~ 237 (346)
T TIGR01141 158 LLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRA 237 (346)
T ss_pred CCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccC
Confidence 99999999988876 999999999872111 111 112235678889999987667 8999999887776654321
Q ss_pred cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE 375 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~ 375 (458)
. .+.+...+.++..+++... .+++.+++++++++++.+.|++++++++..+.
T Consensus 238 ~-----------------------~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--- 289 (346)
T TIGR01141 238 P-----------------------FNLSRLAQAAAIAALRDDD--FIEKTVEEINAERERLYDGLKKLPGLEVYPSD--- 289 (346)
T ss_pred C-----------------------CCCCHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHhcCCCEECCCc---
Confidence 1 1222333333333333322 26778888999999999999988788754322
Q ss_pred cCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 376 HVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 376 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
++++++.+++ +..++.+.|.++ ||.+.+|..+. +.++++|+|++ +++|++++++.|+
T Consensus 290 ----g~~~~~~~~~-~~~~~~~~L~~~-gI~v~~g~~f~-------~~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 290 ----ANFVLIRFPR-DADALFEALLEK-GIIVRDLNSYP-------GLPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred ----CCEEEEecCC-CHHHHHHHHHHC-CeEEEeCCCcC-------CCCCeEEEecC---CHHHHHHHHHHhC
Confidence 6789999886 778899999988 99999987442 11679999977 7899999998763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=261.72 Aligned_cols=342 Identities=15% Similarity=0.172 Sum_probs=243.9
Q ss_pred CCeEEecCCCCC--CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCChhHH
Q 012718 66 KKLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEA 141 (458)
Q Consensus 66 ~~~i~l~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~~v~~t~g~t~a 141 (458)
++.++|+.+... .+|+.+.+++.+.+...... .+....+..+..+.+.+.+++++|.+ ++++|++|+|++++
T Consensus 39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~----~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~a 114 (405)
T PRK06207 39 GRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQ----AYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGA 114 (405)
T ss_pred CCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCc----cCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 678999988765 46677888887776432110 01100112333344445555555854 31489999999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-----CCCCCCHHHHHHhhcCCceEEEEec
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-----DDESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-----~~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
+.+++.++ +++||.|++++|+|+. +..+++..|++++.++++ .++.+|++.+++.+++++++|++++
T Consensus 115 l~~~~~~l----~~~Gd~Vlv~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~ 186 (405)
T PRK06207 115 LFLAVAAT----VARGDKVAIVQPDYFA----NRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSN 186 (405)
T ss_pred HHHHHHHh----cCCCCEEEEeCCCchh----HHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECC
Confidence 99999988 7899999999999984 466677789999999876 2467899999999988899999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccC----CcccCCCC----CCCCcEEEecccCCCCCCc--eeEEEEe
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSV----PHMVVDVQ----GLDADFLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~----g~~~~~~~----~~~~d~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
|+||||.+++ +++|+++|+++|++||+|++|+. +.....+. ..+..+++.|+||.++.+| +||++.+
T Consensus 187 P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~ 266 (405)
T PRK06207 187 PNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGS 266 (405)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcC
Confidence 9999999999 67888999999999999999984 21111111 1235589999999998778 9999999
Q ss_pred ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 284 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+++++.+...... +..+.+. ....++..+++.-.. -+++..++.++.++.+.+.|+++
T Consensus 267 ~~l~~~~~~~~~~--------------------~~~~~~~-~~q~a~~~~l~~~~~-~~~~~~~~~~~~r~~l~~~L~~~ 324 (405)
T PRK06207 267 PAIIDRMEKLQAI--------------------VSLRAAG-YSQAVLRTWFSEPDG-WMKDRIARHQAIRDDLLRVLRGV 324 (405)
T ss_pred HHHHHHHHHHHhH--------------------hccCCCH-HHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 8887766533210 0111222 233333334431101 14555666677788899999887
Q ss_pred CCEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 364 PNIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
+++++..+.. +.++|++++. .+..++.+.|.+++||.+.+|..+.. ..++++||+++. +.++++
T Consensus 325 ~~~~~~~p~g------g~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~------~~~~~~Ris~~~--~~~~l~ 390 (405)
T PRK06207 325 EGVFVRAPQA------GSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSP------HTADSIRLNFSQ--DHAAAV 390 (405)
T ss_pred CCceecCCCe------eEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCC------CCCCeEEEEecC--CHHHHH
Confidence 7777654431 5689999874 46788999887444999999975421 126799999994 789999
Q ss_pred HHHHHHHHHHHhhh
Q 012718 442 EFIHALNETVSFFN 455 (458)
Q Consensus 442 ~l~~~l~~~~~~~~ 455 (458)
+.+++|.+++++++
T Consensus 391 ~al~rl~~~l~~~~ 404 (405)
T PRK06207 391 AAAERIAQLIERYR 404 (405)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=261.46 Aligned_cols=342 Identities=15% Similarity=0.156 Sum_probs=250.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~~v~~t~g~t~a~ 142 (458)
++.++|+.+... ++|+.+.+++.+++..... ..+....+..+..+.+++.+++.+|.+ +.++|++|+|+++++
T Consensus 27 ~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~----~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l 102 (389)
T PRK05957 27 PGTISLGQGVVSYPPPPEAIEALNNFLANPEN----HKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAF 102 (389)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhCCCC----CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHH
Confidence 456899988776 6888899999887753211 112112234566677888888888875 234899999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
..++.++ +++||.|++++|+|... ...++..|++++.++.+.++.+|++++++.+++++++|++++++||||
T Consensus 103 ~~~~~~~----~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG 174 (389)
T PRK05957 103 MNAILAI----TDPGDEIILNTPYYFNH----EMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTG 174 (389)
T ss_pred HHHHHHh----cCCCCEEEEeCCCCcCH----HHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCC
Confidence 9998887 68999999999999854 334466799999999987788999999999988999999999999999
Q ss_pred cccc---HHHHHHHHHhcCcEEEEeccccCCcc------c-CCC-CCCCCcEEEecccCCCCCCc--eeEEEEecccccc
Q 012718 223 SILP---IEEIVHWSHDVGAKVLVDACQSVPHM------V-VDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSA 289 (458)
Q Consensus 223 ~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~------~-~~~-~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~ 289 (458)
.++| +++|+++|+++|+++|+|++|..... + ..+ +.....+++.|+||.+|++| +||+++++++++.
T Consensus 175 ~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~ 254 (389)
T PRK05957 175 VVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEA 254 (389)
T ss_pred cCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHH
Confidence 9999 88899999999999999999872211 1 111 22235688899999999888 9999999988777
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE-EE
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI-RI 368 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~-~~ 368 (458)
+...... ...+++... ..++..+++.-.. -+++..+.++++++.+.+.|++++++ .+
T Consensus 255 ~~~~~~~--------------------~~~~~~~~~-q~~~~~~l~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 312 (389)
T PRK05957 255 IKKIQDT--------------------ILICPPVVS-QYAALGALQVGKS-YCQQHLPEIAQVRQILLKSLGQLQDRCTL 312 (389)
T ss_pred HHHHHhh--------------------cccCCCcHH-HHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 7643220 111223333 3333333321111 14556667788899999999887663 43
Q ss_pred eCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
..+. .+.++|++++ +.+..++++.+.+++||.+.+|..+.. ..++++||+++. .+.+++.+.+++|
T Consensus 313 ~~~~------gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~------~~~~~iRis~~~-~~~~~l~~~~~~l 379 (389)
T PRK05957 313 HPAN------GAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGM------KNGCYLRIAYGA-LQKATAKEGIERL 379 (389)
T ss_pred cCCC------eeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCC------CCCCEEEEEEec-CCHHHHHHHHHHH
Confidence 3322 2557888886 567788999987544999999985532 125699999975 4788999999999
Q ss_pred HHHHHhh
Q 012718 448 NETVSFF 454 (458)
Q Consensus 448 ~~~~~~~ 454 (458)
.+.++++
T Consensus 380 ~~~~~~~ 386 (389)
T PRK05957 380 VQGLKTI 386 (389)
T ss_pred HHHHHhh
Confidence 8888765
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=268.32 Aligned_cols=352 Identities=15% Similarity=0.154 Sum_probs=266.0
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHHHHHHH-HHHHHHHHcCCCCCCcEEEe---CChhH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYEL-ARKKVAAFINASDSGEIVFT---KNATE 140 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~~v~~t---~g~t~ 140 (458)
+.+.|- ++-..+++.+++++...+.... +++. +.+..|....+.+++ .|+.+++++|++++ ++.++ +||++
T Consensus 35 ~~l~l~-~sen~~s~~v~~~~~~~l~~~y~~g~p~-s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~-~~~~~~~~~sgt~ 111 (452)
T PTZ00094 35 EGLELI-ASENFTSRAVLECLGSCFTNKYAEGLPG-NRYYGGNEVVDKIENLCQKRALEAFGLDPE-EWGVNVQPYSGSP 111 (452)
T ss_pred cCeeEe-cccccCCHHHHHHhcchhhccccCCCCC-ccccccchHHHHHHHHHHHHHHHHhCCCcc-cceeecCCCchHH
Confidence 334443 3444678889999999987655 5664 456666666777775 89999999999866 66666 79999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH------HcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEE
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ------KTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVV 213 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~------~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~ 213 (458)
++..++.++ +++||+|+++..+|.++...+..+.+ ..+.++..++++.+|.+|++++++.+.+ ++++++
T Consensus 112 an~~v~~al----~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi 187 (452)
T PTZ00094 112 ANFAVYTAL----LQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLII 187 (452)
T ss_pred HHHHHHHHh----cCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEE
Confidence 999999988 68999999999999987665433211 1124455666777799999999999964 667776
Q ss_pred EecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCC---CCCcEEEecccC-CCCCCceeEEEEecccccc
Q 012718 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQG---LDADFLVASSHK-MCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 214 ~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~---~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~ 289 (458)
+. ++.+|...|+++|.++||++|+++++|++|++|..+.++.. .++|++++|+|| ++||.| |+++++++..+.
T Consensus 188 ~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~ 264 (452)
T PTZ00094 188 AG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPD 264 (452)
T ss_pred Ee--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEecccchH
Confidence 64 34699999999999999999999999999999998665322 269999999999 558997 888888765443
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
+....... .+ ..+ .|+++...++++.++++++...+.+++.+++.+++++|.+.|.+. |+++.
T Consensus 265 l~~~~~~~-----------~~----p~~-~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~ 327 (452)
T PTZ00094 265 IENKINEA-----------VF----PGL-QGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLV 327 (452)
T ss_pred HHHhhccc-----------cC----CCC-CCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEe
Confidence 32211100 00 113 478899999999999999988788999999999999999999886 88887
Q ss_pred CCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEe-ccCCCCChhhHhhcCCCCeEEEeeCCCCC----HHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVAT-RSGHHCAQPLHRYLGVNASARASLHFYNT----KEDVDEFI 444 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~-~~g~~~~~~~~~~~g~~~~lRis~~~~~t----~~di~~l~ 444 (458)
.+... .+..++.|..++.+..++...|.+. ||.+ +++..|..... .++++|+|++.+++ ++||++++
T Consensus 328 ~~~~~---~~~~~v~~~~~~~~~~~~~~~L~~~-gI~vs~~~~p~~~~~~----~~~~vRis~~~~tt~g~~~~di~~l~ 399 (452)
T PTZ00094 328 TGGTD---NHLVLVDLRPFGITGSKMEKLLDAV-NISVNKNTIPGDKSAL----NPSGVRLGTPALTTRGAKEKDFKFVA 399 (452)
T ss_pred cCCCC---CceEeecCCcCCCCHHHHHHHHHHC-CcEEecccCCCCCcCC----CCCeEEECCHHHHhCCCCHHHHHHHH
Confidence 64321 2334556666677788899999776 9999 45555543221 15799999998887 99999999
Q ss_pred HHHHHHHHh
Q 012718 445 HALNETVSF 453 (458)
Q Consensus 445 ~~l~~~~~~ 453 (458)
+.|.++++.
T Consensus 400 ~~l~~~~~~ 408 (452)
T PTZ00094 400 DFLDRAVKL 408 (452)
T ss_pred HHHHHHHHH
Confidence 999999874
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=262.09 Aligned_cols=346 Identities=17% Similarity=0.231 Sum_probs=253.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEe-CChhHHHHHHHHHcCCCC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFT-KNATEAINLVAYSWGLSN 153 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t-~g~t~a~~~~~~~l~~~~ 153 (458)
++...++.+++++.+..... ....+++..+.+.++++|+.+++++|++++++|+|+ +|+|.+++.++.++
T Consensus 10 GP~~~~~~v~~a~~~~~~~~-----~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l---- 80 (361)
T TIGR01366 10 GPSKVRLEQLQALTTTAASL-----FGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGL---- 80 (361)
T ss_pred CCcCCCHHHHHHHHhcCccc-----cccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhc----
Confidence 45567888888866321110 012355667889999999999999999755588886 66999999999987
Q ss_pred CCCCCEEEEcCCCCccchHHHHHHHHHc--CCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHH
Q 012718 154 LKSGDEVILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 154 ~~~g~~vl~~~~~~~s~~~~~~~~a~~~--g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
+.+ +.+++....|.+.. ...++.. +.+++.++.++...++ ..+.+++++|+++|.+|.||.+.|+++|
T Consensus 81 ~~~-~~l~i~~G~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~lV~~~h~et~tG~~~pi~~I- 150 (361)
T TIGR01366 81 IEK-KSLHLSFGEFSSKF---AKAVKLAPWLGEPIIVTADPGSAPE-----PQADPGVDVIAWAHNETSTGVAVPVRRP- 150 (361)
T ss_pred ccc-cccEEecCHHHHHH---HHHHHhhhccCCceEEecCCCCCCC-----CccCCCCCEEEEcccCCccceecccccc-
Confidence 322 34455566665543 4444431 2367777766543333 2356789999999999999999999888
Q ss_pred HHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCC
Q 012718 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTF 310 (458)
Q Consensus 232 ~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 310 (458)
+|++|++++||+++++|+.++++++ +|++++|.||++|| +|+++++++++.++++.+...++..... +.+...+
T Consensus 151 --~~~~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~-~~d~~~~ 225 (361)
T TIGR01366 151 --EGSDDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPE-FLSLPTA 225 (361)
T ss_pred --cccCCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCch-hhhHHHH
Confidence 5889999999999999999999986 89999999997775 5688889999988888766554332211 1111111
Q ss_pred C-CCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC
Q 012718 311 A-DPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE 388 (458)
Q Consensus 311 ~-~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 388 (458)
. ........+|++...++++..+++++.+. |++.+.++.+++++++.+.|.+++.++++...........+.+.| ..
T Consensus 226 ~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~-~~ 304 (361)
T TIGR01366 226 VDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDF-VD 304 (361)
T ss_pred HhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEEC-CC
Confidence 1 11123446788888888999999999998 699999999999999999999996677664332110112244555 25
Q ss_pred CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 389 NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 389 ~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+++..++.+.|.++ ||.+.++.. .++ ...+|+|++.|+|.+||++++++|+++++++
T Consensus 305 g~~~~~v~~~L~~~-gI~i~~~~~-------~l~-~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 305 DIDAATVAKILRAN-GIVDTEPYR-------KLG-RNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred ccCHHHHHHHHHHC-CCeeccCcc-------ccC-CCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 67888999999888 999865421 133 4689999999999999999999999988753
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=255.28 Aligned_cols=342 Identities=19% Similarity=0.215 Sum_probs=246.6
Q ss_pred CeEEecCC-CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 67 KLVYLDNA-ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 67 ~~i~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
+.|++|.- ..|.+++.+.+++.++....... ................++++.+|+++|.+ .+++++|+++++..+
T Consensus 7 ~~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~e~lA~~~g~~---~~~i~~g~~~a~~~~ 82 (370)
T TIGR02539 7 GSINLNPLQRGGVLTEAARKALVEFGDGYSVC-DFCGGRLDQITKPPIHDFLEDLAEFLGMD---EARVTHGAREGKFAV 82 (370)
T ss_pred cccccChhhhCCCCcHHHHHHHHHHhhccccc-cccccccccccchHHHHHHHHHHHHhCCC---ceEEECChHHHHHHH
Confidence 44566643 45678899999998886532111 01111111123445667888899999997 566789999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcC-------CceEEEEec
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSR-------KTKLVVIHH 216 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~-------~~~~v~~~~ 216 (458)
+.++ +++||.|+++.++|.+.. ..++..|++++.++.++ ++.+|++++++.+++ ++++|++++
T Consensus 83 ~~~l----~~~gd~Vl~~~~~h~s~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~ 154 (370)
T TIGR02539 83 MHAL----CKEGDWVVLDGLAHYTSY----VAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTH 154 (370)
T ss_pred HHHh----hCCCCEEEECCcccHHHH----HHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEEC
Confidence 9988 689999999999998754 34577899999999863 477899999999863 678999999
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCc-eeEEEEeccccccCCCccc
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG-IGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g-~G~l~~~~~~~~~l~~~~~ 295 (458)
++|++|.+.|+++|.++|+++|+++++|++|+.|..+.+....++|++++|+||++++.| +|++++++++++.+.....
T Consensus 155 p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~ 234 (370)
T TIGR02539 155 VDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSR 234 (370)
T ss_pred CCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhccccc
Confidence 999999999999999999999999999999999877666666779999999999877544 8999999998888775443
Q ss_pred cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE 375 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~ 375 (458)
.|..... .+..++.......++.++++...+. +++..+. .++.+++.+.|+++ |++++...+
T Consensus 235 ~~~~~~~-------------~~~~~~~~~~~~~~~~~al~~~~~~-l~~~~~~-~~~~~~l~~~L~~~-g~~~~~~~~-- 296 (370)
T TIGR02539 235 YSPVKEV-------------ELLGCTSRGAPIVTMMASFPHVVER-VKRWDEE-VKKTRWFVAELEDI-GFIQLGQKP-- 296 (370)
T ss_pred CCcccee-------------eeecccccccHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHhC-CcEEEccCC--
Confidence 2221100 0112233333444444555543321 3333333 34467899999988 888754322
Q ss_pred cCccccEEEEEeCCC---------ChHHHHHHHhhhcCeE-eccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 376 HVQRAALCSFNVENI---------HPTDIATLLDQQYGVA-TRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 376 ~~~~~~~v~~~~~~~---------~~~~~~~~l~~~~gi~-~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
...+++.++++.. ....+.+.|.++ ||. ++++. ++++|+++. ..+++|++++++
T Consensus 297 --s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~-GI~~ir~~~------------~~~iRis~~-~~t~e~i~~l~~ 360 (370)
T TIGR02539 297 --KEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKR-GIHGIRSGQ------------TKYFKLSVY-GLTKEQVEYVVD 360 (370)
T ss_pred --CcCceEEEECCchhHHhhhhccccHHHHHHHHhC-CCccccCCc------------ceEEEEEec-CCCHHHHHHHHH
Confidence 2267888887643 234688899988 997 55432 568999984 369999999999
Q ss_pred HHHHHHHhh
Q 012718 446 ALNETVSFF 454 (458)
Q Consensus 446 ~l~~~~~~~ 454 (458)
+|+++++++
T Consensus 361 ~L~~~~~~~ 369 (370)
T TIGR02539 361 SFEEIVEEY 369 (370)
T ss_pred HHHHHHHhc
Confidence 999987653
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=262.67 Aligned_cols=331 Identities=14% Similarity=0.181 Sum_probs=242.2
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
+.+++.|+.+... ++++.+.+++.+.+.....+. + . .....++|++++++++ ++++++|++|+|
T Consensus 31 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~----y----~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G 101 (399)
T PRK07681 31 GHKMIDLSIGNPDMPPADFVREEMVHTANQKESYG----Y----T-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMG 101 (399)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCC----C----C-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCC
Confidence 3677888888765 567778888877664321110 0 0 1234567788888774 344248999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++++.+++.++ +++||.|++++|+|+ .+...++..|++++.++++++ +.+|++++++.+.+++++|+++
T Consensus 102 ~~~al~~~~~~~----~~~Gd~Vlv~~P~y~----~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~ 173 (399)
T PRK07681 102 SQDGLVHLPMVY----ANPGDIILVPDPGYT----AYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILN 173 (399)
T ss_pred cHHHHHHHHHHh----CCCCCEEEECCCCcc----chHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEe
Confidence 999999999988 789999999999998 446667778999999999754 4579999999888889999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCC---CC-CCCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVD---VQ-GLDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~---~~-~~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+|+||||.+++ +++|+++|+++|++||+|++|..-. .... +. ..+..+++.|+||.+|.+| +||++.
T Consensus 174 ~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~ 253 (399)
T PRK07681 174 FPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIG 253 (399)
T ss_pred CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEec
Confidence 99999999999 7788999999999999999998221 1111 11 1235688899999999888 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+..... ....+.+.....++..+++.-.. -+++.++.++++++++.+.|++
T Consensus 254 ~~~l~~~~~~~~~---------------------~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 311 (399)
T PRK07681 254 NEEIVRALTQFKS---------------------NTDYGVFLPIQKAACAALRNGAA-FCEKNRGIYQERRDTLVDGFRT 311 (399)
T ss_pred CHHHHHHHHHHHh---------------------hcccCCCHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776653321 00112333333444444432111 2456677788889999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
. ++++..+. .+.++|++++ +.+..++.+.+.+++||.+.+|..+... .++++|++++ .+.++++
T Consensus 312 ~-g~~~~~p~------~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~------~~~~iRis~~--~~~~~~~ 376 (399)
T PRK07681 312 F-GWNVDKPA------GSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPH------GEGFVRIALV--QDEEVLQ 376 (399)
T ss_pred C-CCcccCCC------eeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcC------CCCeEEEEec--CCHHHHH
Confidence 7 77664443 1668899887 4567788888887449999998754221 2579999998 5789999
Q ss_pred HHHHHHHH
Q 012718 442 EFIHALNE 449 (458)
Q Consensus 442 ~l~~~l~~ 449 (458)
+++++|.+
T Consensus 377 ~~l~~l~~ 384 (399)
T PRK07681 377 QAVENIRN 384 (399)
T ss_pred HHHHHHHH
Confidence 99999988
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=259.02 Aligned_cols=321 Identities=17% Similarity=0.228 Sum_probs=242.5
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHH-hccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+++++|+.+... ++|+.+.+++.+.+.. ...++. . ..+++|+++|++++++++ +|++|+|+++++.
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~~----------~-~~~~lr~aia~~~~~~~~-~I~it~G~~~al~ 91 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYPD----------P-NADALRQAIAAYYGLDPE-QVFVGNGSDEVLA 91 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCCC----------C-cHHHHHHHHHHHhCCCHH-HEEEcCCHHHHHH
Confidence 578999998877 4578889998887653 221211 1 135899999999998875 9999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
+++.++ +++||.|++++|+|+ .+...++..|++++.++.++++.+|++++++ .++++++++|+||||.
T Consensus 92 ~~~~~l----~~~gd~vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~ 159 (353)
T PRK05387 92 HAFLAF----FNHDRPLLFPDITYS----FYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR----PNGGIIFPNPNAPTGI 159 (353)
T ss_pred HHHHHh----cCCCCEEEEeCCCHH----HHHHHHHHcCCEEEEeecCCCCCCCHHHHHh----cCCEEEEeCCCCCCCC
Confidence 999988 789999999999996 3456677789999999998888889998863 4578899999999999
Q ss_pred cccHHHHHHHHHhc-CcEEEEeccccC-Ccc-cCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccC
Q 012718 224 ILPIEEIVHWSHDV-GAKVLVDACQSV-PHM-VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGG 297 (458)
Q Consensus 224 ~~~l~~i~~l~~~~-~~~vivD~a~~~-g~~-~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~ 297 (458)
++|.+++.++++.. ++++|+|++|.. +.. ... ....+.+++++|+||.+|.+| +||++.++++++.+......
T Consensus 160 ~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~- 238 (353)
T PRK05387 160 ALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNS- 238 (353)
T ss_pred CCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhcc-
Confidence 99999999998875 999999999862 111 111 122346799999999998777 99999988877666533210
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcC
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHV 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~ 377 (458)
+...+.+.....++..+++... .+++.++++.++++++.+.|+++ ++++..+.
T Consensus 239 -------------------~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----- 291 (353)
T PRK05387 239 -------------------FNSYPLDRLAQAGAIAAIEDEA--YFEETRAKVIATRERLVEELEAL-GFEVLPSK----- 291 (353)
T ss_pred -------------------CCCCCcCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC-CCeECCCc-----
Confidence 1122444445555555554211 25677888888999999999887 77654221
Q ss_pred ccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 378 QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 378 ~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++++++++++.+..++.+.|.++ ||.++... .+ +.++++|++++ +.+++++++++|+++++
T Consensus 292 --~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~---~~-----~~~~~iRis~~---~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 292 --ANFVFARHPSHDAAELAAKLRER-GIIVRHFN---KP-----RIDQFLRITIG---TDEEMEALVDALKEILA 352 (353)
T ss_pred --CcEEEEECCCCCHHHHHHHHHHC-CEEEEECC---CC-----CCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 66888988877788999999888 99986321 11 22579999998 66999999999998875
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=260.53 Aligned_cols=333 Identities=17% Similarity=0.173 Sum_probs=242.7
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~g~ 138 (458)
++.+.|+.+... ++++.+.+++.+.+..... . + .......++|+.+++++ | .+++ +|++|+|+
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~----~-Y----~~~~G~~~lr~~la~~~~~~~~~~~~~~-~i~~t~g~ 93 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALADGET----F-Y----THNLGIPELREALARYVSRLHGVATPPE-RIAVTSSG 93 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhcCCC----C-C----CCCCCCHHHHHHHHHHHHHHhCCCcCcc-eEEEeCCh
Confidence 467888888766 5578888888887654210 0 1 11122335556666554 6 4444 99999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC---CCCCHHHHHHhhcCCceEEEEe
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD---ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~---~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
++++..++.++ +++||.|++++|+|... ...++..|++++.++.+.+ +.+|++.+++.+++++++++++
T Consensus 94 ~~al~~~~~~l----~~~gd~vl~~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~ 165 (382)
T PRK06108 94 VQALMLAAQAL----VGPGDEVVAVTPLWPNL----VAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFIN 165 (382)
T ss_pred HHHHHHHHHHh----cCCCCEEEEeCCCccch----HHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEE
Confidence 99999999987 68999999999999844 4556778999999998742 4689999999998889999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc--------CCCCC-CCCcEEEecccCCCCCCc--eeEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV--------VDVQG-LDADFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~--------~~~~~-~~~d~~~~s~~K~~gp~g--~G~l~ 281 (458)
+++||||.+++ +++|+++|+++|+++|+|++|+..... .++.. .+..+++.|+||.+|.+| +||++
T Consensus 166 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~ 245 (382)
T PRK06108 166 SPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLV 245 (382)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeee
Confidence 99999999998 678999999999999999998843221 12222 235688999999888767 89999
Q ss_pred EeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Q 012718 282 GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 282 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
+++++++.+..... +....++.....++..+++...+ .+++++++++++++++.+.|+
T Consensus 246 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~ 303 (382)
T PRK06108 246 APPALGQVLEKLIE---------------------YNTSCVAQFVQRAAVAALDEGED-FVAELVARLRRSRDHLVDALR 303 (382)
T ss_pred CCHHHHHHHHHHHH---------------------hcccCCChHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99888776653321 11112333333344444432211 256778889999999999998
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
+++++++..+. .+.++++++++ .+..++++.|.+++||.+.+|..+.. ..++++|+|++. +.+++
T Consensus 304 ~~~~~~~~~p~------~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~------~~~~~~Ris~~~--~~~~l 369 (382)
T PRK06108 304 ALPGVEVAKPD------GAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGP------GGEGFLRWCFAR--DPARL 369 (382)
T ss_pred hCCCCcccCCC------eeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCC------CCCCEEEEEecC--CHHHH
Confidence 88788776543 14577888874 35678888886544999998874421 125799999996 88999
Q ss_pred HHHHHHHHHHHH
Q 012718 441 DEFIHALNETVS 452 (458)
Q Consensus 441 ~~l~~~l~~~~~ 452 (458)
++++++|.++++
T Consensus 370 ~~~l~~l~~~l~ 381 (382)
T PRK06108 370 DEAVERLRRFLA 381 (382)
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-32 Score=265.88 Aligned_cols=339 Identities=15% Similarity=0.181 Sum_probs=243.0
Q ss_pred CCCeEEecCCCCC-----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEE
Q 012718 65 SKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIV 133 (458)
Q Consensus 65 ~~~~i~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~ 133 (458)
++++++|..|... ..|+.+.+++.+.+.....+ .+........+|+++|++++ ++++ +|+
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~--------~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~-~I~ 135 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGN--------SYGPGAGILPARRAVADYMNRDLPHKLTPE-DIF 135 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCC--------CCCCCCChHHHHHHHHHHHHHhcCCCCCcc-cEE
Confidence 4789999998554 34577888888776532111 11123345678888988884 3454 999
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhcCCceE
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSRKTKL 211 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~ 211 (458)
+|+|+++++.+++.++ +++||.|++++|+|+. +...++..|++++.+++. .++.+|++++++++++++++
T Consensus 136 it~G~~~al~~~~~~l----~~pGd~Vlv~~P~y~~----y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~ 207 (462)
T PLN02187 136 LTAGCNQGIEIVFESL----ARPNANILLPRPGFPH----YDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVA 207 (462)
T ss_pred EeCCHHHHHHHHHHHh----cCCCCEEEEeCCCCcc----HHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEE
Confidence 9999999999999988 7899999999999994 456677889999999885 34788999999999889999
Q ss_pred EEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cC-C---CCCCCCcEEEecccCCCCCCc--eeE
Q 012718 212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VV-D---VQGLDADFLVASSHKMCGPTG--IGF 279 (458)
Q Consensus 212 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~-~---~~~~~~d~~~~s~~K~~gp~g--~G~ 279 (458)
+++++|+||||.+++ +++|+++|+++|++||+|++|..-.. +. . +......+++.|+||.|+.+| +||
T Consensus 208 v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~ 287 (462)
T PLN02187 208 MVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGW 287 (462)
T ss_pred EEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEE
Confidence 999999999999999 77899999999999999999984211 11 1 222224688899999988888 999
Q ss_pred EEEec-c-c---cccCCCccccCcceEeeecCCCCCCCCCCccCC-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012718 280 LFGKS-D-L---LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEA-GTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353 (458)
Q Consensus 280 l~~~~-~-~---~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~ 353 (458)
+++.+ + . ++.+...... +.. ..++.....++.++++.....-+++.++.+++.+
T Consensus 288 ~v~~~p~~~~~~~~~~~~~~~~--------------------~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r 347 (462)
T PLN02187 288 IALNDPEGVFETTKVLQSIKQN--------------------LDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNV 347 (462)
T ss_pred EEecCchhHHHHHHHHHHHHHh--------------------ccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 99843 2 2 1223222110 111 1234445555555554211122677788888999
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----C-ChHHHHHHH-hhhcCeEeccCCCCChhhHhhcCCCCe
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----I-HPTDIATLL-DQQYGVATRSGHHCAQPLHRYLGVNAS 426 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~-~~~~~~~~l-~~~~gi~~~~g~~~~~~~~~~~g~~~~ 426 (458)
+++.+.|+++++......+. .+.+++++++. + +..+++..+ .++ ||.+.+|..+ |.+++
T Consensus 348 ~~l~~~L~~~~~~~~~~~P~-----gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~-gV~v~pG~~f--------g~~~~ 413 (462)
T PLN02187 348 DLVCDRLKDIPCVVCPKKPE-----SCTYLLTKLELSLMDNIKDDIDFCVKLAREE-NLVFLPGDAL--------GLKNW 413 (462)
T ss_pred HHHHHHHhhCCCCcCCCCCC-----EeEEEEeecChhhCCCCCCHHHHHHHHHhhC-CEEEECcccc--------CCCCe
Confidence 99999998875443222221 25688887642 2 344666655 555 9999999744 34789
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 427 ARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 427 lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+||+++ ...+.+++.+++|.+++++..+
T Consensus 414 iRis~~--~~~e~l~~al~rL~~~l~~~~~ 441 (462)
T PLN02187 414 MRITIG--VEAHMLEDALERLKGFCTRHAK 441 (462)
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHHHHhhh
Confidence 999999 5789999999999999976543
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=261.67 Aligned_cols=338 Identities=16% Similarity=0.178 Sum_probs=247.1
Q ss_pred CCCeEEecCCCCC-----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCC------CCCCcEE
Q 012718 65 SKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA------SDSGEIV 133 (458)
Q Consensus 65 ~~~~i~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~~v~ 133 (458)
+.++|+|..|.+. +.|+.+.+++.+.+.....+. +.......++|++++++++. ++ ++|+
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~--------Y~~~~G~~~lr~aia~~~~~~~~~~~~~-~~v~ 121 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNS--------YSTCVGLLPARRAIAEYLSRDLPYELST-DDIY 121 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCC--------CCCCccCHHHHHHHHHHHhhccCCCCCh-hhEE
Confidence 3679999998653 567888999988876421111 11233456888999998854 33 4899
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceE
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKL 211 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~ 211 (458)
+|+|+++|+.+++.++ .++||+|++++|+|+. +...+...|++++.+++.+ ++.+|++.+++.+++++++
T Consensus 122 it~G~~~al~l~~~~l----~~~Gd~Vlv~~P~y~~----y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 193 (430)
T PLN00145 122 LTAGCAQAIEIIMSVL----AQPGANILLPRPGYPL----YEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVA 193 (430)
T ss_pred EeCCHHHHHHHHHHHh----cCCCCEEEEcCCCCcc----HHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceE
Confidence 9999999999999988 6899999999999994 4556677799999998753 4778999999999999999
Q ss_pred EEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---c-CC---CCCCCCcEEEecccCCCCCCc--eeE
Q 012718 212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---V-VD---VQGLDADFLVASSHKMCGPTG--IGF 279 (458)
Q Consensus 212 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~-~~---~~~~~~d~~~~s~~K~~gp~g--~G~ 279 (458)
+++++|+||||.++| +++|+++|+++|++||+|++|..-.. + .. +......++++|+||.|+.+| +||
T Consensus 194 i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~ 273 (430)
T PLN00145 194 MVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGW 273 (430)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEE
Confidence 999999999999999 77888999999999999999973211 1 11 233346789999999988888 999
Q ss_pred EEEe--cccccc------CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 012718 280 LFGK--SDLLSA------MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEME 351 (458)
Q Consensus 280 l~~~--~~~~~~------l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~ 351 (458)
+++. +.+++. +..+.. . ...++...+.++..+++.-.+.-+++..+.+++
T Consensus 274 iv~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~ 331 (430)
T PLN00145 274 IATCDPNGILKETKVVDSIRNYLN---------------------I-STDPATFVQGAIPQIIANTKEEFFTKTLGLLKE 331 (430)
T ss_pred EEEecchhhhhhhHHHHHHHHHhc---------------------c-cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9984 233222 111100 0 112333344455455543111225677888888
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----C-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----I-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 352 l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
.++.+.+.|++++++.+...+.. +.+++++++. . +..+++..|.++.||.+.||..+ |.++
T Consensus 332 ~~~~~~~~L~~~~g~~~~~~P~g-----a~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~f--------g~~~ 398 (430)
T PLN00145 332 TADICYEKIKEIKCITCPHKPEG-----SMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSAL--------GMKN 398 (430)
T ss_pred HHHHHHHHHhcCCCCCCCcCCCe-----eeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCcccc--------CCCC
Confidence 99999999998878765432221 6688888752 2 45667766665559999999843 4478
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
++||+++ .+.+++++.+++|.+++++.++
T Consensus 399 ~lRis~~--~~~~~l~~al~rl~~~~~~~~~ 427 (430)
T PLN00145 399 WLRITFA--IDPPSLEDGLERLKSFCLRHAK 427 (430)
T ss_pred eEEEEeC--CCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999 5789999999999999987655
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=259.44 Aligned_cols=317 Identities=15% Similarity=0.159 Sum_probs=240.7
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+++.|+.+... ++|+.+.+++.+.+.....++. ....++|++++++++++++ +|++|+|+++++.+
T Consensus 29 ~~~i~l~~nen~~~~~~~v~~a~~~~~~~~~~Yp~-----------~g~~~Lr~aia~~~~~~~~-~I~vt~Gs~e~i~~ 96 (366)
T PRK01533 29 HSFVKLASNENPFGCSPRVLDELQKSWLDHALYPD-----------GGATTLRQTIANKLHVKME-QVLCGSGLDEVIQI 96 (366)
T ss_pred CceEEeCCCCCCCCCCHHHHHHHHHHHHhcCcCCC-----------CCHHHHHHHHHHHhCCCcc-eEEECCCHHHHHHH
Confidence 578999998877 6788899998887654322221 1235799999999999876 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++.++ +++||.|++++|+|+ .+...++..|++++.++++ ++.+|++++++.++++++++++++|+||||.+
T Consensus 97 ~~~~l----~~~gd~vlv~~P~y~----~~~~~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~ 167 (366)
T PRK01533 97 ISRAV----LKAGDNIVTAGATFP----QYRHHAIIEGCEVKEVALN-NGVYDLDEISSVVDNDTKIVWICNPNNPTGTY 167 (366)
T ss_pred HHHHh----cCCCCEEEEcCCcHH----HHHHHHHHcCCEEEEeecC-CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCC
Confidence 99988 689999999999998 5567778889999999986 45689999999998899999999999999999
Q ss_pred ccHHHHHH---HHHhcCcEEEEeccccCCcc------cCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCC
Q 012718 225 LPIEEIVH---WSHDVGAKVLVDACQSVPHM------VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPP 292 (458)
Q Consensus 225 ~~l~~i~~---l~~~~~~~vivD~a~~~g~~------~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~ 292 (458)
++.+++.+ +|++++ ++|+|++|..-.. .+. +...+..+++.|+||.||.+| +||+++++++++.+..
T Consensus 168 ~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~ 246 (366)
T PRK01533 168 VNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNV 246 (366)
T ss_pred cCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHH
Confidence 99665544 455555 6778999862110 011 223346789999999999888 9999999887776653
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
... ..+.+.....++..+++.- . -.+.+.+..++.++++.+.++.+ ++++..+.
T Consensus 247 ~~~-----------------------~~~~~~~~q~aa~~~l~~~-~-~~~~~~~~~~~~r~~~~~~l~~~-g~~~~~~~ 300 (366)
T PRK01533 247 VRL-----------------------PFNVSSLAQKAATIAFGDD-E-FIEEIVRVNTEGLRQYESFCKEN-EIPFYQSQ 300 (366)
T ss_pred hcC-----------------------CCCcCHHHHHHHHHHhCCH-H-HHHHHHHHHHHHHHHHHHHHHhC-CCccCCCc
Confidence 321 1234444555555555421 1 14556677777888888888777 76655443
Q ss_pred CCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
+++++++++ +..++.+.|.++ ||.+++ + ++++||+++ +.+|+++++++|+++++
T Consensus 301 -------~nf~~~~~~--~~~~~~~~l~~~-GI~Vr~---~----------~~~iRis~~---~~~~~~~l~~al~~~~~ 354 (366)
T PRK01533 301 -------TNFIFLPVE--NGGEIYEACAHA-GFIIRP---F----------PNGVRITVG---TREQNEGVISVLQQHFE 354 (366)
T ss_pred -------CcEEEEeCC--CHHHHHHHHHHC-CcEEcc---C----------CCceEEeCC---CHHHHHHHHHHHHHHHH
Confidence 779999986 467899999988 999986 1 468999999 78999999999999987
Q ss_pred hhhc
Q 012718 453 FFNV 456 (458)
Q Consensus 453 ~~~~ 456 (458)
-.++
T Consensus 355 ~~~~ 358 (366)
T PRK01533 355 NKKR 358 (366)
T ss_pred hccc
Confidence 5543
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=258.34 Aligned_cols=319 Identities=19% Similarity=0.197 Sum_probs=241.2
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+++++|+.+..+ ++|+.+.+++.+. .....++. ....++|+++++++|++++ +|++|+|+++++.+
T Consensus 52 ~~~i~l~~n~~p~~~~~~v~~a~~~~-~~~~~Yp~-----------~~~~~lr~~ia~~~~~~~~-~I~~t~Ga~~~i~~ 118 (380)
T PLN03026 52 EDIVKLDANENPYGPPPEVLEALGNM-KFPYVYPD-----------PESRRLRAALAEDSGLESE-NILVGCGADELIDL 118 (380)
T ss_pred cceEEccCCCCCCCCCHHHHHHHHhh-HhhccCCC-----------CCHHHHHHHHHHHhCcChh-hEEEcCCHHHHHHH
Confidence 678999998765 5677788877542 11111111 1135799999999999876 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhh-cCCceEEEEecccCcCcc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML-SRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~n~tG~ 223 (458)
++.++ +++||+|++++|+|. .+...++..|++++.++.++++.+|++++++.+ ++++++|++++|+||||.
T Consensus 119 ~~~~~----~~~gd~Vlv~~P~y~----~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~ 190 (380)
T PLN03026 119 LMRCV----LDPGDKIIDCPPTFG----MYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGS 190 (380)
T ss_pred HHHHh----cCCCCEEEEcCCChH----HHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCC
Confidence 99887 689999999999997 456667778999999998777888999999998 678999999999999999
Q ss_pred cccHHHHHHHHHhcCcEEEEeccccCCc---ccC-CCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccC
Q 012718 224 ILPIEEIVHWSHDVGAKVLVDACQSVPH---MVV-DVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGG 297 (458)
Q Consensus 224 ~~~l~~i~~l~~~~~~~vivD~a~~~g~---~~~-~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~ 297 (458)
++|.+++.++++.. ++||+|++|..-. ... .+...+..+++.|+||.||..| +||++.++++++.+......
T Consensus 191 ~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~~- 268 (380)
T PLN03026 191 IISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP- 268 (380)
T ss_pred CCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcCC-
Confidence 99999999999865 9999999986211 111 1223356789999999999888 99999998887666432211
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcC
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHV 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~ 377 (458)
.+.+.....++.++|+.. +. +++.++.+++.++++.+.|++++++.+. +.
T Consensus 269 ----------------------~~~~~~~q~aa~~aL~~~-~~-~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~----- 318 (380)
T PLN03026 269 ----------------------YNVSVAAEVAACAALSNP-KY-LEDVKNALVEERERLFGLLKEVPFLEPY-PS----- 318 (380)
T ss_pred ----------------------CCCCHHHHHHHHHHhhCH-HH-HHHHHHHHHHHHHHHHHHHHHCCCCeEC-CC-----
Confidence 123333444455555422 11 5667788888899999999988555542 22
Q ss_pred ccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 378 QRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 378 ~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
.+++++++++ +.+..++.+.|.++ ||.++++.. .+.++++|||++ +.+++++++++|+++
T Consensus 319 -~~~f~~~~~~~~~~~~~~~~~l~~~-gI~v~~~~~--------~~~~~~lRis~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 319 -DANFILCRVTSGRDAKKLKEDLAKM-GVMVRHYNS--------KELKGYIRVSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred -CCeEEEEECCCCCCHHHHHHHHHHC-CeEEEECCC--------CCCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence 1678999987 45678899999977 999987642 123679999999 678999999998764
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=258.90 Aligned_cols=322 Identities=15% Similarity=0.188 Sum_probs=245.7
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHh--ccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAY--NSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
.++++|+.+.++ ++|+.+.+++.+.+... ..++. ....++|+.+|+++|.+..++|++|+|+++++
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----------~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i 94 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPD-----------PRAAALKAALRAAMGVPAGADVLLGNGSDELI 94 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCC-----------CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHH
Confidence 578999998877 68899999998877531 11111 12358999999999987544899999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcC
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNML 221 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t 221 (458)
..++.++ +++||+|++++|+|. .+...++..|++++.+++++++.+|++.+++.+.. +++++++++++|||
T Consensus 95 ~~~~~~~----~~~gd~vlv~~P~y~----~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPt 166 (356)
T PRK04870 95 QLLALAC----AKPGATVLAPEPGFV----MYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPT 166 (356)
T ss_pred HHHHHHh----cCCCCEEEECCCCHH----HHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCC
Confidence 9999887 689999999999998 45777888899999999987888999999999864 78999999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcc---cCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcccc
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGG 296 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g 296 (458)
|.+++.+++.++++..++++|+|++|..-.. ...+...+..+++.|+|| +|.+| +||+++++++++.+......
T Consensus 167 G~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~~ 245 (356)
T PRK04870 167 GNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPP 245 (356)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHccCC
Confidence 9999988887777766889999999862111 012233345788999999 78888 99999998877766533211
Q ss_pred CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc
Q 012718 297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH 376 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~ 376 (458)
| +.+.....+...+++.... +++..++++++++++.+.|++++++.+..+.
T Consensus 246 ~-----------------------~~~~~~q~~a~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---- 296 (356)
T PRK04870 246 Y-----------------------NVNVLTQATALFALEHVDV--LDAQAAQLRAERTRLAAALAALPGVTVFPSA---- 296 (356)
T ss_pred C-----------------------cCCHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHHHHHHhCCCcEECCCC----
Confidence 1 2233333334444443222 5677788889999999999988887654222
Q ss_pred CccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 377 VQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 377 ~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+++++++++ +..++.+.|.++ ||.++++..+.. +.++++||+++ +.+++++++++|++++
T Consensus 297 ---~~~~~~~~~--~~~~~~~~l~~~-gI~v~~~~~f~~------~~~~~iRis~~---~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 297 ---ANFILVRVP--DAAAVFDGLKTR-GVLVKNLSGMHP------LLANCLRVTVG---TPEENAQFLAALKAAL 356 (356)
T ss_pred ---CeEEEEECC--CHHHHHHHHHHC-CEEEEECCCCCC------CCCCeEEEeCC---CHHHHHHHHHHHHHhC
Confidence 678999887 567888888887 999998764421 12679999999 6899999999998753
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=262.14 Aligned_cols=336 Identities=13% Similarity=0.105 Sum_probs=241.0
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
+++.++|+.+..+ ++|+.+.+++.+.+..... . +.......++|+.++++++ ++++ +|++|+|
T Consensus 31 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~-----~----Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G 100 (387)
T PRK08960 31 GHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHT-----R----YTAARGLPALREAIAGFYAQRYGVDVDPE-RILVTPG 100 (387)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCC-----c----cCCCCCCHHHHHHHHHHHHHHhCCCCChh-hEEEccC
Confidence 4778999999988 6799999999988763110 0 1112345578888888874 4454 9999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++++.+++.++ +++||.|++++|+|+... ..++..|.+++.++++.+ +.+|++.+++.+++++++++++
T Consensus 101 ~~~al~~~~~~~----~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~ 172 (387)
T PRK08960 101 GSGALLLASSLL----VDPGKHWLLADPGYPCNR----HFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVA 172 (387)
T ss_pred cHHHHHHHHHHh----cCCCCEEEEcCCCCcchH----HHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEE
Confidence 999999999988 789999999999999664 344556999999998754 4689999999999889999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc---ccCCCCCC-CCcEEEecccCCCCCCc--eeEEEEeccc
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH---MVVDVQGL-DADFLVASSHKMCGPTG--IGFLFGKSDL 286 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~---~~~~~~~~-~~d~~~~s~~K~~gp~g--~G~l~~~~~~ 286 (458)
+++||||.++| +++|+++|+++|+++|+|++|..-. ....+... ...++++|+||.+|.+| +||+++++++
T Consensus 173 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~ 252 (387)
T PRK08960 173 SPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPAA 252 (387)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEcCHHH
Confidence 99999999999 5577778999999999999986321 11111112 24578889999999888 9999999888
Q ss_pred cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Q 012718 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~ 366 (458)
++.+..+... +..++ +.....++..+++......+.+.++.+++.++.+.+.|+++ ++
T Consensus 253 ~~~~~~~~~~--------------------~~~~~-s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~ 310 (387)
T PRK08960 253 VPELEKLAQN--------------------LYISA-STPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL-GF 310 (387)
T ss_pred HHHHHHHHhh--------------------hccCC-CHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 7766543221 11122 33333333344431111125667778888899999999886 55
Q ss_pred EEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 367 RIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
.+...+. .+.++|++++. .+..++.+.+.+++||.+.+|..|... ...+++|++++. +.+++...+
T Consensus 311 ~~~~~p~-----g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----~~~~~iRi~~~~--~~~~l~~al 378 (387)
T PRK08960 311 GIAVEPQ-----GAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRH-----QAGQHVRFAYTQ--SLPRLQEAV 378 (387)
T ss_pred cCCcCCC-----eeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCC-----CCCCeEEEEecC--CHHHHHHHH
Confidence 4422221 15688998874 466788887765449999999755321 114699999994 677888888
Q ss_pred HHHHHHHH
Q 012718 445 HALNETVS 452 (458)
Q Consensus 445 ~~l~~~~~ 452 (458)
++|.++++
T Consensus 379 ~~l~~~~~ 386 (387)
T PRK08960 379 ERIARGLR 386 (387)
T ss_pred HHHHHHHh
Confidence 88777654
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=258.29 Aligned_cols=318 Identities=16% Similarity=0.197 Sum_probs=242.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
++.+.|+.+... .+++.+.+++.+.+......+. ....++|++++++++++++ +|++|+|+++++..
T Consensus 29 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~~p~-----------~g~~~lr~~ia~~~~~~~~-~i~~t~G~~~~l~~ 96 (359)
T PRK03158 29 EKIVKLASNENPYGPSPKVKEAIAAHLDELALYPD-----------GYAPELRTKVAKHLGVDEE-QLLFGAGLDEVIQM 96 (359)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCC-----------CcHHHHHHHHHHHhCCCHH-HEEECCCHHHHHHH
Confidence 467888777555 3677788888887654322221 2355899999999998765 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++.++ +++||.|++++|+|+ .+...+...|++++.++.+ ++.+|++.+++.++++++++++++|+||||.+
T Consensus 97 ~~~~~----~~~gd~v~~~~p~y~----~~~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~ 167 (359)
T PRK03158 97 ISRAL----LNPGTNTVMAEPTFS----QYRHNAIIEGAEVREVPLK-DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTY 167 (359)
T ss_pred HHHHH----hCCCCEEEEcCCCHH----HHHHHHHHcCCeEEEEecC-CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCC
Confidence 99887 689999999999998 4456667789999999987 66789999999998899999999999999999
Q ss_pred ccHHHHHHHHHh--cCcEEEEeccccCCcc----cC--C-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCc
Q 012718 225 LPIEEIVHWSHD--VGAKVLVDACQSVPHM----VV--D-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 225 ~~l~~i~~l~~~--~~~~vivD~a~~~g~~----~~--~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~ 293 (458)
+|.++|.++++. +|+++|+|++|..... +. . +...+..+++.|++|.+|.+| +||+++++++++.+...
T Consensus 168 ~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~ 247 (359)
T PRK03158 168 VNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIA 247 (359)
T ss_pred CCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHh
Confidence 999998888876 5999999999973221 11 1 123356788999999999888 79999998887666533
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
... ...+.....++..+++.-. -++++.+..++.++++.+.|.+. ++.+..+.
T Consensus 248 ~~~-----------------------~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~- 300 (359)
T PRK03158 248 RPP-----------------------FNTTRIAQYAAIAALEDQA--FLKECVEKNAEGLEQYYAFCKEY-GLFYYPSQ- 300 (359)
T ss_pred cCC-----------------------CCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC-CCeeCCCc-
Confidence 210 1234444444445553211 14566677778888888888887 77664322
Q ss_pred CCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
+.+++++++ .+..++.+.|.++ ||.+++|..+ +.++++||+++ +.+|+++++++|+++
T Consensus 301 ------g~~i~~~~~-~~~~~~~~~l~~~-gv~v~~g~~f--------~~~~~iRi~~~---~~~~~~~l~~al~~~ 358 (359)
T PRK03158 301 ------TNFIFVDTG-RDANELFEALLKK-GYIVRSGAAL--------GFPTGVRITIG---LKEQNDKIIELLKEL 358 (359)
T ss_pred ------CcEEEEECC-CCHHHHHHHHHHC-CeEEeeCCCC--------CCCCeEEEecC---CHHHHHHHHHHHHHh
Confidence 668888874 3577899999887 9999998744 33679999988 789999999999875
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=263.00 Aligned_cols=357 Identities=19% Similarity=0.173 Sum_probs=250.7
Q ss_pred CCCeEEecCCCCCCCcHHHHHH-HHHHHHHhccCCCCCcchh--hhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 65 SKKLVYLDNAATSQKPIAVLKA-LQNYYEAYNSNVHRGIHFL--SAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 65 ~~~~i~l~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
+.+++++..+..+..++.+..+ ..+. .. ..+...+.. ..+..+..+++++.+++++|++.+ +++++++++.+
T Consensus 19 ~~~~~~l~~g~~~~~~p~~~~~~~~~~--~~--~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~-~v~~~~~g~~~ 93 (398)
T cd00613 19 DQSMSFLGSGTYKHNPPAVIKRNILEN--EF--YTAYTPYQPEISQGRLQALFELQTMLCELTGMDVA-NASLQDEATAA 93 (398)
T ss_pred ccCcccccccccCCcCcHHHHHHhccc--cC--cccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCcc-ceeccCchHHH
Confidence 3567899999988655555544 4443 11 111111110 234557788899999999998765 67777766655
Q ss_pred HHHHHHHcCCCCCCC--CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 142 INLVAYSWGLSNLKS--GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~--g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
.+.++.++. +.+ ||+|+++++.|++....+....+..|++++.++.++++.+|++++++.+.+++++|++++++
T Consensus 94 ~~~~~~~~~---~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t~~viv~~~~- 169 (398)
T cd00613 94 AEAAGLAAI---RAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPN- 169 (398)
T ss_pred HHHHHHHHH---hcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCeEEEEEECCC-
Confidence 444443331 344 99999999999988777776655666999999988778889999999999999999999985
Q ss_pred cCcccccH-HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCC-----CceeEEEEeccccccCCCc
Q 012718 220 MLASILPI-EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGP-----TGIGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 220 ~tG~~~~l-~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp-----~g~G~l~~~~~~~~~l~~~ 293 (458)
++|.+.++ ++|.++|+++|+++|+|++|+.+..+.+...+++|++++|+||+++| .++|++++++++++.+.+.
T Consensus 170 ~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~ 249 (398)
T cd00613 170 TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGR 249 (398)
T ss_pred CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCC
Confidence 89999985 99999999999999999999876665666677899999999997654 4589999999888777655
Q ss_pred cccCcceEe----eecCCCCCCCCCCccCCCCCC-----HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 294 LGGGEMISD----VFLDHSTFADPPSRFEAGTPA-----IGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 294 ~~g~~~~~~----~~~~~~~~~~~~~~~~~gt~~-----~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
..+|..... .+.... ......+++.++++ .....++..++..+...+++++.++.+++++++.+.|++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~-~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 328 (398)
T cd00613 250 LVGVTKDAEGNRAFRLALQ-TREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVG 328 (398)
T ss_pred eeccccccCCCcceEEecc-cchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444432110 000000 00011234444443 23334444555666666788999999999999999999885
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
+.. .+. ..+.+.++|+++. .+..++.+.|.++ ||.+.... ....+.+|+|++.|+|++|||
T Consensus 329 ~~~--~~~----~~~~~~v~~~~~~~~~~~~~~~~~~L~~~-gi~~~~~~---------~~~~~~lRis~~~~~t~edid 392 (398)
T cd00613 329 GVL--PFN----GPFFHEFVLRLPPLYGIRAEDLAKALIDG-GFHAPTMY---------LPVDGTLMIEPTETETKEELD 392 (398)
T ss_pred Ccc--cCC----CCeeEEEEEEcCCcchHHHHHHHHhhhhc-Cccccccc---------cCCCCeEEEEcCCCCCHHHHH
Confidence 443 111 1224556788763 3567899999888 98764211 112578999999999999999
Q ss_pred HHHHHH
Q 012718 442 EFIHAL 447 (458)
Q Consensus 442 ~l~~~l 447 (458)
++++.|
T Consensus 393 ~~~~~L 398 (398)
T cd00613 393 ALLEAL 398 (398)
T ss_pred HHHHhC
Confidence 999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-31 Score=252.99 Aligned_cols=333 Identities=20% Similarity=0.216 Sum_probs=247.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL 154 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~ 154 (458)
..+++.+.+.+++.++.... .+++.-.+..+........++++.+++++|++ ++++++|+|+++..++.++ +
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~---~i~~~~g~t~al~~~l~~~----~ 80 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGY-SVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMD---EARVTPGAREGKFAVMHSL----C 80 (361)
T ss_pred cCCCCCHHHHHHHHHHhccc-CCccccccccccccCchHHHHHHHHHHHcCCc---eEEEeCCHHHHHHHHHHHh----c
Confidence 45578899999999987432 33321111222223356778999999999993 8999999999999999987 6
Q ss_pred CCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCC--CCCHHHHHHhhc-------CCceEEEEecccCcCcccc
Q 012718 155 KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE--SPDLDKLKEMLS-------RKTKLVVIHHISNMLASIL 225 (458)
Q Consensus 155 ~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~--~~d~~~l~~~l~-------~~~~~v~~~~~~n~tG~~~ 225 (458)
++||+|+++.++|.+.. ..++..|++++.++.++++ .+|++.+++.++ +++++|++++++|+||...
T Consensus 81 ~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~ 156 (361)
T cd06452 81 EKGDWVVVDGLAHYTSY----VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH 156 (361)
T ss_pred CCCCEEEEcCCcchHHH----HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec
Confidence 89999999999998764 3467779999999988654 889999999886 3689999999999999999
Q ss_pred cHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeee
Q 012718 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVF 304 (458)
Q Consensus 226 ~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 304 (458)
|+++|.++|+++|+++|+|++|+.|..+++..+++.|++++|+||+++ |.++|++++++++++.+......+.. ..
T Consensus 157 ~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~-~~-- 233 (361)
T cd06452 157 DAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKI-KE-- 233 (361)
T ss_pred cHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhcccccccc-ce--
Confidence 999999999999999999999999988887777889999999999665 56699999998887776543321111 00
Q ss_pred cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEE
Q 012718 305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCS 384 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~ 384 (458)
..+..+++......++.++++.+.+. ++.+ .+..++++++.+.|+++++++++.+.+ ...+++.
T Consensus 234 ----------~~~~~~~~~~~~~~~~~~al~~~~~~-~~~~-~~~~~~~~~l~~~L~~l~g~~v~~~~~----~~~n~~~ 297 (361)
T cd06452 234 ----------VELLGCTLRGAPLVTLMASFPHVKER-VKRW-DEEVEKARWFVAELEKIEGIKQLGEKP----KNHDLMF 297 (361)
T ss_pred ----------eeeeccccCchHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhcCCCeEEECCCC----CCCceEE
Confidence 01123445555566666666655432 3333 333456689999999999999875432 2356777
Q ss_pred EEeCCC---------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 385 FNVENI---------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 385 ~~~~~~---------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
++.+.. ...++.+.|.++ ||.... .+...++|++... .+++|+++++++|+++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~L~~~-gI~~~~-----------~~~~~~~ri~~~g-~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 298 FETPSFDEIAKKHKRRGYFLYSELKKR-GIHGIK-----------PGLTRYFKLSTYG-LTWEQVEYVVDAFKEIA 360 (361)
T ss_pred EEcCCcchhhhhccccchhHHHHHHHc-CceEEc-----------CCCceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence 776521 123688999888 998521 1225689999833 69999999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=254.73 Aligned_cols=322 Identities=18% Similarity=0.258 Sum_probs=241.8
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+..+.|+.+.+. ++|+.+.+++.+++.....+ . + . ....+++|+.+|++++++++ +|++|+|+++++.+
T Consensus 22 ~~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~--~--y----~-~~~~~~lr~~ia~~~~~~~~-~i~it~G~~~~l~~ 91 (351)
T PRK14807 22 PYKYKMDANETPFELPEEVIKNIQEIVKSSQVN--I--Y----P-DPTAEKLREELARYCSVVPT-NIFVGNGSDEIIHL 91 (351)
T ss_pred CceeEccCCCCCCCCCHHHHHHHHHHhhcCccc--C--C----C-CccHHHHHHHHHHHhCCCcc-cEEEecCHHHHHHH
Confidence 345778888777 67899999988876531111 1 1 0 11246899999999999876 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLAS 223 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~ 223 (458)
++.++ +++||+|++++|+|. .+...++..|++++.+++++++.+|++++++.+++ +++++++++++||||.
T Consensus 92 ~~~~l----~~~gd~Vlv~~p~y~----~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~ 163 (351)
T PRK14807 92 IMLAF----INKGDVVIYPHPSFA----MYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGS 163 (351)
T ss_pred HHHHh----cCCCCEEEEeCCChH----HHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCC
Confidence 99887 789999999999998 45667778899999999987788999999999975 8899999999999999
Q ss_pred cccHHHHHHHHHhcCcEEEEeccccC--CcccCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCc
Q 012718 224 ILPIEEIVHWSHDVGAKVLVDACQSV--PHMVVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGE 298 (458)
Q Consensus 224 ~~~l~~i~~l~~~~~~~vivD~a~~~--g~~~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~ 298 (458)
+++.+++.++|++++.++|+|++|.. +..... +...+..+++.|+||.+|.+| +||++.++++++.+......
T Consensus 164 ~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~-- 241 (351)
T PRK14807 164 VIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSP-- 241 (351)
T ss_pred CCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccCC--
Confidence 99999999999998889999999962 111111 223346789999999998777 99999988877766532210
Q ss_pred ceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCc
Q 012718 299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQ 378 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~ 378 (458)
...+.....++...++ ...+++..+++++.++++.+.|++++++++..+.
T Consensus 242 ---------------------~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~------ 291 (351)
T PRK14807 242 ---------------------YNINSLSQVIALKVLR---TGVLKERVNYILNERERLIKELSKIPGIKVYPSK------ 291 (351)
T ss_pred ---------------------CCcCHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECcCC------
Confidence 1122333334433333 2225566667778888899999887788764322
Q ss_pred cccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 379 RAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 379 ~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+++++++++ +..++.+.|.++ ||.++++... .+.++++||+++ +.++.+++++.|++++
T Consensus 292 -~~~~~i~~~--~~~~~~~~l~~~-gV~v~~~~~~-------~~~~~~iRis~~---~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 292 -TNFILVKFK--DADYVYQGLLER-GILVRDFSKV-------EGLEGALRITVS---SCEANDYLINGLKELL 350 (351)
T ss_pred -ccEEEEEcC--CHHHHHHHHHHC-CEEEEECCCC-------CCCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence 678888887 467888888888 9999764311 123679999998 5789999999998754
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=237.38 Aligned_cols=363 Identities=16% Similarity=0.181 Sum_probs=273.1
Q ss_pred CCccchhhhhcCCCCcccccccCCCCeEEecCCCCC-----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHH
Q 012718 42 TDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELA 116 (458)
Q Consensus 42 ~~~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (458)
....++...+-..|...+.+.. +.++.+.+|.++ +..+.+.+|+.+.++....| ++....++..+
T Consensus 39 a~~~tir~i~~~l~~~~~p~~~--k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N--------~Yaps~G~~~A 108 (447)
T KOG0259|consen 39 AASVTIRGILSALFDCCDPEKK--KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGN--------GYAPSVGILPA 108 (447)
T ss_pred hccccHHHHHHHHhhcCCcccC--ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCC--------CcCCccccHHH
Confidence 3444555555555555443322 588999888665 35678888988888753332 23345667789
Q ss_pred HHHHHHHcCCCC-----CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 117 RKKVAAFINASD-----SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 117 ~~~la~~~g~~~-----~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
|+++|++++.+. .++|++|+|+++|+++++.++ .+||..|+++.|+|+ -+...|...|.+++++++-
T Consensus 109 R~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~L----A~p~aNILlPrPGfp----~Y~~~a~~~~lEVR~ydlL 180 (447)
T KOG0259|consen 109 RRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSL----ANPGANILLPRPGFP----LYDTRAIYSGLEVRYYDLL 180 (447)
T ss_pred HHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHh----cCCCCceecCCCCCc----hHHHhhhhcCceeEeeccc
Confidence 999999987652 249999999999999999999 589999999999999 5677788889999999876
Q ss_pred C--CCCCCHHHHHHhhcCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEecccc---CCcccC-C---CCCC
Q 012718 192 D--DESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQS---VPHMVV-D---VQGL 259 (458)
Q Consensus 192 ~--~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~---~g~~~~-~---~~~~ 259 (458)
+ ++++|++.+++.++++|.++++.+|+||+|.+++ +++|++.|+++|++||.|++|. +|.-|+ . +...
T Consensus 181 Pe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssi 260 (447)
T KOG0259|consen 181 PEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSI 260 (447)
T ss_pred CcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhcccc
Confidence 4 5899999999999999999999999999999999 8899999999999999999998 333322 2 3334
Q ss_pred CCcEEEecccC-CCCCCc-eeEEEEeccccccCCCcc--ccCcceEeeecCCCCCCCCCCccC-CCCCCHHHHHHHHHHH
Q 012718 260 DADFLVASSHK-MCGPTG-IGFLFGKSDLLSAMPPFL--GGGEMISDVFLDHSTFADPPSRFE-AGTPAIGEAIGLGAAI 334 (458)
Q Consensus 260 ~~d~~~~s~~K-~~gp~g-~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~l~~al 334 (458)
-+.+.++|.+| |+.|+= +||+++.+.. ..++... .+-- ...+ ...|+..-+.|+...|
T Consensus 261 VPVitlggisKrW~VPGWRlGWi~~hD~~-gvf~~~~~~q~~~----------------~~~~~~~~p~TiiQ~AlP~IL 323 (447)
T KOG0259|consen 261 VPVITLGGISKRWIVPGWRLGWIALHDPR-GVFRDTKVVQGIK----------------NFLDIIPGPATIIQGALPDIL 323 (447)
T ss_pred CceEeecccccccccCCceeeeEEEeccc-ccccchHHHHHHH----------------HHHhccCCccHhHHHHhHHHH
Confidence 47889999999 776544 9999997632 1111100 0000 0011 2345555666777666
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC-----C-CChHHHHHHHhhhcCeEec
Q 012718 335 DYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-----N-IHPTDIATLLDQQYGVATR 408 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~-~~~~~~~~~l~~~~gi~~~ 408 (458)
+--.+.-+++....++.+++..+++|+++|++++...+.. +.++++.+. + .+..++++.|.++..+.+-
T Consensus 324 ~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg-----~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~L 398 (447)
T KOG0259|consen 324 EKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEG-----CMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICL 398 (447)
T ss_pred HhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCc-----ceEEEeccchhhhccccccHHHHHHHhhhcceEEe
Confidence 6555544677788889999999999999999996655543 557777654 2 2567899888766699999
Q ss_pred cCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 409 SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 409 ~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
||. .+|.++|+|+++. ...+.+++.+++|+++..+-
T Consensus 399 PG~--------af~~~nw~Ri~i~--~~~~~leea~~Rik~Fc~RH 434 (447)
T KOG0259|consen 399 PGQ--------AFGLKNWLRIVIT--VEEEMLEEAFSRIKEFCDRH 434 (447)
T ss_pred ccc--------cccCCCeEEEEEc--cChHHHHHHHHHHHHHHHhh
Confidence 998 5677999999999 68899999999999998754
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=258.99 Aligned_cols=333 Identities=17% Similarity=0.209 Sum_probs=241.0
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC-CCCCCcEEEeCChhHHH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN-ASDSGEIVFTKNATEAI 142 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~~v~~t~g~t~a~ 142 (458)
+.+++.|.-+... +.|+.+ +++.+.+.....+ +.......++|++++++++ .+++ +|++|+|+++|+
T Consensus 25 ~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~---------Y~~~~G~~~lr~~ia~~~~~~~~~-~vi~t~G~~~al 93 (373)
T PRK07324 25 ESCIDSLTLEELLALAGKNP-EAFYQELGQKKLT---------YGWIEGSPEFKEAVASLYQNVKPE-NILQTNGATGAN 93 (373)
T ss_pred cCCCCCCcHHHHHhccCcch-HHHHHHHhcCCcc---------CCCCCCCHHHHHHHHHHhcCCChh-hEEEcCChHHHH
Confidence 4667777666554 334444 6666665431110 1112234589999999885 4554 999999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEecccCc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHHISNM 220 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~~~n~ 220 (458)
.+++.++ +++||+|+++.|+|.+ +...++..|++++.++++++ +.+|++++++.+.++++++++++++||
T Consensus 94 ~~~~~~l----~~~gd~Vl~~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NP 165 (373)
T PRK07324 94 FLVLYAL----VEPGDHVISVYPTYQQ----LYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNP 165 (373)
T ss_pred HHHHHHh----CCCCCEEEEcCCCchh----HHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCC
Confidence 9999988 7899999999999984 45667788999999998753 457999999999889999999999999
Q ss_pred Cccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCC-CCCCCcEEEecccCCCCCCc--eeEEEEeccccccCC
Q 012718 221 LASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMP 291 (458)
Q Consensus 221 tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~-~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~ 291 (458)
||.+++ +++|+++|+++|+++|+|++|..-.. ...+ ...+..+++.|+||.+|.+| +||+++++++++.+.
T Consensus 166 tG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~ 245 (373)
T PRK07324 166 TGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILR 245 (373)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCHHHHHHHH
Confidence 999999 88899999999999999999863211 1111 11234688889999998777 899999888777665
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
....... .+.+.. ...++..+++.... -+++.++.++++++.+.+.|++.+++.+..+
T Consensus 246 ~~~~~~~--------------------~~~~~~-~q~~a~~~l~~~~~-~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p 303 (373)
T PRK07324 246 KYRDYTM--------------------ICAGVF-DDMLASLALEHRDA-ILERNRKIVRTNLAILDEWVAKEPRVSYVKP 303 (373)
T ss_pred HHhCcEE--------------------ecCChH-HHHHHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHhcCCCceEECC
Confidence 4322100 112223 33333344443222 2566677778888899999988777777665
Q ss_pred CCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
.. +.++++.++ +.+..++++++.+++||.+.||..+ +.++++|||++ .+++.+.+.+++|.++
T Consensus 304 ~g------g~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F--------~~~~~iRis~~--~~~~~l~~~l~rl~~~ 367 (373)
T PRK07324 304 KA------VSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRF--------DLEGHVRIGYC--CDTETLKKGLKKLSEF 367 (373)
T ss_pred Cc------eEEEEEEeCCCCCHHHHHHHHHHhcCEEEECcccc--------CCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 42 445566665 3467788888764449999998743 44679999998 4789999999999999
Q ss_pred HHhh
Q 012718 451 VSFF 454 (458)
Q Consensus 451 ~~~~ 454 (458)
+++.
T Consensus 368 l~~~ 371 (373)
T PRK07324 368 LREF 371 (373)
T ss_pred HHhc
Confidence 8763
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=258.95 Aligned_cols=332 Identities=20% Similarity=0.237 Sum_probs=238.2
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~~~v~~t~g 137 (458)
+++.+.|+.+..+ ++++.+.+++.+.+.... .... .......++|+.+++++ |.+ ++++|++|+|
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y------~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G 99 (383)
T TIGR03540 28 GVDVISLGIGDPDLPTPKHIVEALCKAAENPE--NHRY------PSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIG 99 (383)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCCC--CCCC------CCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCC
Confidence 3677889888776 457788888887765311 1111 11222446777777766 332 3336889999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++++.+++.++ +++||.|++++|+|+.. ...++..|++++.++++++ ..+|++++++.+.+++++++++
T Consensus 100 ~~~~l~~~~~~~----~~~gd~vlv~~P~y~~~----~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~ 171 (383)
T TIGR03540 100 SKEGIAHIPLAF----VNPGDIVLVPDPGYPVY----RIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFIN 171 (383)
T ss_pred cHHHHHHHHHHh----CCCCCEEEEeCCCCcch----HHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEe
Confidence 999999999987 78999999999999954 5556778999999998743 4579999999988899999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccC----CcccCCC---CC-CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSV----PHMVVDV---QG-LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~----g~~~~~~---~~-~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+|+||||.+++ +++|+++|+++|+++|+|++|.. +..+..+ .. .+..+++.|+||.||.+| +||++.
T Consensus 172 ~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~ 251 (383)
T TIGR03540 172 YPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVG 251 (383)
T ss_pred CCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeC
Confidence 99999999999 67899999999999999999972 1111222 11 235688899999999888 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+...... ...+++.. ...++..+++.... -++++++.++++++.+.+.|++
T Consensus 252 ~~~l~~~~~~~~~~--------------------~~~~~~~~-~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~ 309 (383)
T TIGR03540 252 NADLIAGLGKVKTN--------------------VDSGVFQA-IQYAAIAALNGPQD-VVKEIRKIYQRRRDLLLEALKK 309 (383)
T ss_pred CHHHHHHHHHHHHh--------------------cccCCChH-HHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 98877666533210 01122222 33344444433222 2566778888999999999998
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
. ++.+..+. .+.++|++++ +.+..++.+.+.+++||.+++|..+... .++++||+++ .+.++++
T Consensus 310 ~-~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~------~~~~~Ris~~--~~~~~l~ 374 (383)
T TIGR03540 310 I-GIDVEKPK------ATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEY------GEGYIRISLT--VPDERLE 374 (383)
T ss_pred C-CCEecCCC------cceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCcc------CCCeEEEEec--CCHHHHH
Confidence 7 77776543 1557889887 4567888988754449999999765321 1579999998 4677777
Q ss_pred HHHHHHHH
Q 012718 442 EFIHALNE 449 (458)
Q Consensus 442 ~l~~~l~~ 449 (458)
+.++.|.+
T Consensus 375 ~~l~~l~~ 382 (383)
T TIGR03540 375 EAVARIKK 382 (383)
T ss_pred HHHHHHhh
Confidence 77777653
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-31 Score=257.41 Aligned_cols=337 Identities=17% Similarity=0.152 Sum_probs=244.8
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~g~ 138 (458)
.+.+.|..|.+. +.|+.+.+++.+.+.+. .. .+ .......++|+++++++ |. +++++|++|+|+
T Consensus 54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~-~~----~Y----~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~ 124 (413)
T PLN00175 54 HGAINLGQGFPNFDGPDFVKEAAIQAIRDG-KN----QY----ARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGC 124 (413)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHHHhcC-CC----Cc----CCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCH
Confidence 467899888777 45778888888877641 11 11 11223446666676665 43 333369999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
++|+.+++.++ +++||.|++++|.|.. +...++..|++++.+++++ ++.+|++.+++.+.+++++|+++++
T Consensus 125 ~~al~~~~~~l----~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p 196 (413)
T PLN00175 125 TEAIAATILGL----INPGDEVILFAPFYDS----YEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTP 196 (413)
T ss_pred HHHHHHHHHHh----CCCCCEEEEeCCCchh----HHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCC
Confidence 99999999887 7899999999999984 4566677899999999874 4688999999999889999999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cC---CCCC-CCCcEEEecccCCCCCCc--eeEEEEecc
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VV---DVQG-LDADFLVASSHKMCGPTG--IGFLFGKSD 285 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~---~~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~~~ 285 (458)
+||||.+++ +++|+++|+++|++||+|++|..... .. .+.. .+..++++|+||.|+.+| +||++++++
T Consensus 197 ~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~ 276 (413)
T PLN00175 197 HNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPH 276 (413)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHH
Confidence 999999998 66789999999999999999974321 11 1222 246789999999988777 999999988
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+++.+..... +...+.+.....++..+++.-.. -++++++++++.++.+.+.|++. +
T Consensus 277 l~~~l~~~~~---------------------~~~~~~s~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g 333 (413)
T PLN00175 277 LTWGVRQAHS---------------------FLTFATATPMQWAAVAALRAPES-YYEELKRDYSAKKDILVEGLKEV-G 333 (413)
T ss_pred HHHHHHHHHh---------------------hccCCCCHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHC-C
Confidence 7766543221 01123333344444455543212 26778888999999999999887 7
Q ss_pred EEEeCCCCCCcCccccEEEEEeC--CC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVE--NI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
+++..+.. +.++|++++ +. +..++.+.|.++.||.+.||..+.... -...+++||+++ .+++++++
T Consensus 334 ~~~~~p~g------~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~---~~~~~~iRls~~--~~~e~l~~ 402 (413)
T PLN00175 334 FKVYPSSG------TYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNP---EDGKNLVRFAFC--KDEETLRA 402 (413)
T ss_pred CeecCCCe------eEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCC---CCCCCEEEEEEc--CCHHHHHH
Confidence 77765431 457888874 33 457888888655599999987442100 012569999998 47999999
Q ss_pred HHHHHHHHHHh
Q 012718 443 FIHALNETVSF 453 (458)
Q Consensus 443 l~~~l~~~~~~ 453 (458)
.+++|.+++++
T Consensus 403 ~~~rL~~~~~~ 413 (413)
T PLN00175 403 AVERMKTKLKR 413 (413)
T ss_pred HHHHHHHHHhC
Confidence 99999988753
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=257.17 Aligned_cols=336 Identities=16% Similarity=0.166 Sum_probs=243.4
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC----C--CCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN----A--SDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~--~~~~~v~~t~g~ 138 (458)
++.+.|+.+... ++++.+.+++.+.+... .. . +.......++|+++|++++ . +++++|++|+|+
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~~--~----Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~ 90 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQG---YT--S----YTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGA 90 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcC---CC--C----CCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCh
Confidence 357888888766 34566777777665421 00 0 1112234567777777774 3 233379999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
++|+.+++.++ +++||.|++++|+|+. +...++..|.+++.++.+. ++.+|++++++.+.++++++++++
T Consensus 91 ~~al~~~~~~l----~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~ 162 (378)
T PRK07682 91 SQALDVAMRAI----INPGDEVLIVEPSFVS----YAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCS 162 (378)
T ss_pred HHHHHHHHHHh----CCCCCEEEEeCCCchh----hHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEEC
Confidence 99999999988 7899999999999993 4556677799999998763 467899999999988999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-----c-CCCCC-CCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----V-VDVQG-LDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-----~-~~~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
|+||||.+++ +++|+++|+++++++|+|++|..... + ..+.. .+..+++.|+||.||.+| +||+++++
T Consensus 163 p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~ 242 (378)
T PRK07682 163 PNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPV 242 (378)
T ss_pred CCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCH
Confidence 9999999998 77899999999999999999883321 1 11111 246789999999998778 99999999
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
++++.+..... +...+.+.....++..+++.-.. .+++++++++++++++.+.|+++
T Consensus 243 ~~i~~l~~~~~---------------------~~~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~~- 299 (378)
T PRK07682 243 YFSEAMLKIHQ---------------------YSMMCAPTMAQFAALEALRAGND-DVIRMRDSYRKRRNFFVTSFNEI- 299 (378)
T ss_pred HHHHHHHHHHH---------------------hhccCCCHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHC-
Confidence 88777653321 11112333333444444432111 26777888899999999999987
Q ss_pred CEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
++++..+. .+.++|..++ +.+..++.+.+.++.||.+.+|..+.. ..++++|||++ .+.+++++
T Consensus 300 ~~~~~~p~------g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~------~~~~~iRis~~--~~~~~l~~ 365 (378)
T PRK07682 300 GLTCHVPG------GAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGE------SGEGFIRCSYA--TSLEQLQE 365 (378)
T ss_pred CCccCCCC------eeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCc------CCCCeEEEEeC--CCHHHHHH
Confidence 77665443 1446777764 457788988876433999999875522 12689999999 47899999
Q ss_pred HHHHHHHHHHhhh
Q 012718 443 FIHALNETVSFFN 455 (458)
Q Consensus 443 l~~~l~~~~~~~~ 455 (458)
.+++|.+++++++
T Consensus 366 ~l~~l~~~l~~~~ 378 (378)
T PRK07682 366 AMKRMKRFVENKK 378 (378)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999987653
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=253.03 Aligned_cols=326 Identities=20% Similarity=0.207 Sum_probs=243.9
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCC--CCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGL--SNLKS 156 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~--~~~~~ 156 (458)
+.+.+.+++.+++.....++. .+ .......+++++.+++++|+++. ++++++|+++++..++.++.. ..-++
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~la~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 105 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPG--LF---PGTKKIEEEVVGSLGNLLHLPDA-YGYIVSGGTEANIQAVRAAKNLAREEKR 105 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcc--cC---ccHHHHHHHHHHHHHHHhCCCCC-CeEEeccHHHHHHHHHHHHHHHHhccCC
Confidence 333457777777654333332 11 13456678899999999999865 788899999999888765421 00146
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD 236 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~ 236 (458)
||+|++++++|.+ |...++..|++++.++.++++.+|++++++.+++++..+++..++|+||.+.|+++|.++|++
T Consensus 106 g~~vl~~~~~h~~----~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~ 181 (373)
T TIGR03812 106 TPNIIVPESAHFS----FEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALE 181 (373)
T ss_pred CcEEEECCcchHH----HHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHH
Confidence 7899999999984 566778889999999998888899999999998877544544578999999999999999999
Q ss_pred cCcEEEEeccccCCcc----------cCCCCCCCCcEEEecccCC-CCCCceeEEE-EeccccccCCCccccCcceEeee
Q 012718 237 VGAKVLVDACQSVPHM----------VVDVQGLDADFLVASSHKM-CGPTGIGFLF-GKSDLLSAMPPFLGGGEMISDVF 304 (458)
Q Consensus 237 ~~~~vivD~a~~~g~~----------~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~-~~~~~~~~l~~~~~g~~~~~~~~ 304 (458)
+|+++|+|++|+.+.. .+++...+.|++++|+||+ ++|.++|+++ .+++.++.+... ..+.
T Consensus 182 ~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~-~~~~------ 254 (373)
T TIGR03812 182 NGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVD-APYL------ 254 (373)
T ss_pred cCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhccc-Cccc------
Confidence 9999999999985543 2344445789999999995 4566666555 556665554311 0000
Q ss_pred cCCCCCCCCCCc-cCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEE
Q 012718 305 LDHSTFADPPSR-FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALC 383 (458)
Q Consensus 305 ~~~~~~~~~~~~-~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v 383 (458)
..... ...||++...++++.++++.+.+.|++++.++..++++++.+.|+++ ++....++ ..+++
T Consensus 255 -------~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~~~~v 320 (373)
T TIGR03812 255 -------TVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI-GFEPVIEP------VLNIV 320 (373)
T ss_pred -------CCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCC------CceEE
Confidence 00011 12478888889999999999888889999999999999999999988 55433222 16688
Q ss_pred EEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 384 SFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.|++++ ..++.+.|.++ ||.++... .+.++|++++.++|++|++++++.|++
T Consensus 321 ~~~~~~--~~~v~~~L~~~-gi~v~~~~-----------~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 321 AFEVDD--PEEVRKKLRDR-GWYVSVTR-----------CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred EEEeCC--HHHHHHHHHHC-CceeccCC-----------CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 888774 46899999988 99987532 156899999999999999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=259.28 Aligned_cols=285 Identities=19% Similarity=0.194 Sum_probs=227.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCChhHHHHHHHHHcCCCCCC--------C--CCEEEEcCCCCccch
Q 012718 103 HFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAINLVAYSWGLSNLK--------S--GDEVILTVAEHHSAI 171 (458)
Q Consensus 103 ~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~a~~~~~~~l~~~~~~--------~--g~~vl~~~~~~~s~~ 171 (458)
+..+....+..+++++.+++++|.+ .+.+++||+|+|+|+.+++.++..+... + ++.|++++++|++.
T Consensus 30 y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~- 108 (345)
T cd06450 30 WDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSV- 108 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHH-
Confidence 3344456677788999999999997 3348999999999999999887321111 2 34788899999854
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEec
Q 012718 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDA 245 (458)
Q Consensus 172 ~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~ 245 (458)
...++..|++++.++.++++.+|++++++.+++ +++++++++++|+||.+.|+++|+++|+++|+++|+|+
T Consensus 109 ---~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~ 185 (345)
T cd06450 109 ---EKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDA 185 (345)
T ss_pred ---HHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEec
Confidence 445556699999999988888999999999987 78899999999999999999999999999999999999
Q ss_pred cccCCcccCCCCC------CCCcEEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccC
Q 012718 246 CQSVPHMVVDVQG------LDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFE 318 (458)
Q Consensus 246 a~~~g~~~~~~~~------~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 318 (458)
+|+.+..+.+... .++|++++|+||+ ++|.|+|+++++
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~----------------------------------- 230 (345)
T cd06450 186 AYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR----------------------------------- 230 (345)
T ss_pred hhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-----------------------------------
Confidence 9998876543221 2589999999995 568889988766
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----CChH
Q 012718 319 AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----IHPT 393 (458)
Q Consensus 319 ~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~ 393 (458)
.+++.++++.+...|++++.++..++++++.+.|.+++++++..++. .++++|.+++ .+..
T Consensus 231 --------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------~~iv~f~~~~~~~~~~~~~ 296 (345)
T cd06450 231 --------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPN------LSLVCFRLKPSVKLDELNY 296 (345)
T ss_pred --------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc------eeEEEEEECCcchhhHHHH
Confidence 25666777888878899999999999999999999998998765431 6789998875 3456
Q ss_pred HHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC-CCHHHHHHHHHHHHH
Q 012718 394 DIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY-NTKEDVDEFIHALNE 449 (458)
Q Consensus 394 ~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~-~t~~di~~l~~~l~~ 449 (458)
++.++|.++ |+.+.++.. ++.+.++|++++.+ ++.+|++++++.|++
T Consensus 297 ~i~~~L~~~-g~~~~~~~~--------~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 297 DLSDRLNER-GGWHVPATT--------LGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred HHHHHHHhc-CCEEEEeeE--------ECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 899999887 655443321 11357899999976 499999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=257.96 Aligned_cols=331 Identities=20% Similarity=0.242 Sum_probs=236.7
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~g~ 138 (458)
.+.+.|+.+... ++++.+.+++.+.+.....+ .. .......++|+++++++ |. +++++|++|+|+
T Consensus 31 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Y------~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~ 102 (385)
T PRK09276 31 VDVISLGIGDPDLPTPDHIIEAMCKAVEDPENH--QY------PSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGS 102 (385)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCC--CC------CCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCc
Confidence 567888888766 56778888888776532111 11 11223456777777777 43 333358899999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
++++..++.++ +++||.|++++|+|+. +...++..|++++.++.+++ +.+|++.+++.+.+++++|++++
T Consensus 103 ~~~i~~~~~~~----~~~gd~Vl~~~P~y~~----~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~ 174 (385)
T PRK09276 103 KEGIAHIPLAF----VNPGDVVLVPDPGYPV----YKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINY 174 (385)
T ss_pred HHHHHHHHHHh----CCCCCEEEEcCCCCcC----hHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeC
Confidence 99999999988 7899999999999984 45566778999999998743 45799999988888899999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCC---CCC-CCCcEEEecccCCCCCCc--eeEEEEe
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVD---VQG-LDADFLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~---~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
|+||||.+++ +++|+++|+++|++||+|++|.... .+.. +.. .+..+++.|+||.||.+| +||++++
T Consensus 175 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~ 254 (385)
T PRK09276 175 PNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGN 254 (385)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCC
Confidence 9999999999 5788899999999999999997321 1112 221 235688899999999888 9999999
Q ss_pred ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 284 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+++++.+...... ...+.+.....++..+++.... .++++++++++.++++.+.|+++
T Consensus 255 ~~l~~~~~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~ 312 (385)
T PRK09276 255 ADLIAGLGKVKSN---------------------VDSGVFQAIQEAGIAALNGPQE-VVEELRKIYQERRDILVEGLRKL 312 (385)
T ss_pred HHHHHHHHHHHhh---------------------ccCCCCHHHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 8887766533210 0112222233333344432111 25677888889999999999887
Q ss_pred CCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 364 PNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
++++..+. .+.+++++++. .+..++.+.|.+++||.+.+|..+... .++++||+++ .+++++.+
T Consensus 313 -~~~~~~~~------~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~------~~~~~Ris~~--~~~~~l~~ 377 (385)
T PRK09276 313 -GLEVEPPK------ATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEY------GEGYFRIALT--VPDERIEE 377 (385)
T ss_pred -CCcccCCC------cceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCC------CCCeEEEEeC--CCHHHHHH
Confidence 77665443 14568898874 567888888765449999998755221 1579999998 46777777
Q ss_pred HHHHHHH
Q 012718 443 FIHALNE 449 (458)
Q Consensus 443 l~~~l~~ 449 (458)
.+++|.+
T Consensus 378 ~l~~l~~ 384 (385)
T PRK09276 378 AVERIKK 384 (385)
T ss_pred HHHHHhh
Confidence 7777653
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-31 Score=253.23 Aligned_cols=317 Identities=15% Similarity=0.149 Sum_probs=238.4
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
++.++|+.+.++ ++|+.+.+++.+.......++ ... ..++|+.+++++|++++ +|++|+|+++++.+
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~----------~~~-~~~Lr~aia~~~~v~~e-~I~it~Gs~~ai~~ 110 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAALSGRYD----------LEL-EDDLRTLFAAQEGLPAD-HVMAYAGSSEPLNY 110 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHHhcCCC----------Cch-HHHHHHHHHHHhCcChh-hEEEcCChHHHHHH
Confidence 678999999876 678899999988765422111 112 56799999999999876 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++.++ +++||+|++++|+|. .+...++..|++++.++.++++.+|++.+++. .++++++++++|+||||.+
T Consensus 111 ~~~~l----~~~gd~Vli~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~ 181 (370)
T PRK09105 111 AVLAF----TSPTAGLVTADPTYE----AGWRAADAQGAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTV 181 (370)
T ss_pred HHHHH----cCCCCEEEEeCCChH----HHHHHHHHcCCeEEEecCCCCCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcC
Confidence 99988 689999999999998 44667788899999999988888899999876 5678999999999999999
Q ss_pred ccHHHHHHHHHh--cCcEEEEecccc-CCccc--CCCCCCC-CcEEEecccCCCCCCc--eeEEEEeccccccCCCcccc
Q 012718 225 LPIEEIVHWSHD--VGAKVLVDACQS-VPHMV--VDVQGLD-ADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGG 296 (458)
Q Consensus 225 ~~l~~i~~l~~~--~~~~vivD~a~~-~g~~~--~~~~~~~-~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g 296 (458)
++.++|.++++. +++++|+|++|. +...+ .++.+.. ..+++.|+||.||.+| +||+++++++++.+... .
T Consensus 182 ~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~-~- 259 (370)
T PRK09105 182 TPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF-G- 259 (370)
T ss_pred cCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc-C-
Confidence 998877777653 589999999995 21111 1221222 4467779999999888 99999998887766533 1
Q ss_pred CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc
Q 012718 297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH 376 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~ 376 (458)
....+.....+...++... + -+++.+++++++++++.+.|++. ++++..+.
T Consensus 260 ----------------------~~~~~~~~~~aa~~~L~~~-~-~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~---- 310 (370)
T PRK09105 260 ----------------------HNPLPVPAAAAGLASLRDP-K-LVPQRRAENAAVREDTIAWLKKK-GYKCTPSQ---- 310 (370)
T ss_pred ----------------------CCCcCHHHHHHHHHHHhCH-H-HHHHHHHHHHHHHHHHHHHHHHC-CCCcCCCC----
Confidence 0123333334444444321 1 25667788889999999999887 77665433
Q ss_pred CccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 377 VQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 377 ~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+++++++++ .+..++.+.|.++ ||.+..+ +. +.++++|++++ +++++++++++|++++
T Consensus 311 ---~~f~~~~~~-~~~~~l~~~L~~~-gI~v~~~--~~-------~~~~~~Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 311 ---ANCFMVDVK-RPAKAVADAMAKQ-GVFIGRS--WP-------IWPNWVRVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred ---CcEEEEeCC-CCHHHHHHHHHHC-CcEEecC--CC-------CCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 566667665 4667899999988 9998321 21 12679999988 6789999999998876
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=255.31 Aligned_cols=319 Identities=19% Similarity=0.258 Sum_probs=235.9
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCChhHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~-t~g~t~a~~ 143 (458)
.++++|+.+... ++++.+.+++.+.+.....++.. ..+++|+.+|+++|++++ +|++ ++|+++++.
T Consensus 34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~-~i~~~~~Ga~~~i~ 101 (361)
T PRK00950 34 ESIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPEP-----------DAPELREALSKYTGVPVE-NIIVGGDGMDEVID 101 (361)
T ss_pred cceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----------CHHHHHHHHHHHhCCCHH-HEEEeCCCHHHHHH
Confidence 578999877543 46677888888776543222211 126899999999999875 8988 688899999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
.++.++ +++||.|++++|+|. .+...++..|++++.++.+.++.+|++++++.++++++++++++++||||.
T Consensus 102 ~~~~~~----~~~gd~vlv~~p~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~ 173 (361)
T PRK00950 102 TLMRTF----IDPGDEVIIPTPTFS----YYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGN 173 (361)
T ss_pred HHHHHh----cCCCCEEEEcCCChH----HHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCC
Confidence 998877 689999999999887 345556778999999997777788999999999888999999999999999
Q ss_pred cccHHHHHHHHHhcCcEEEEeccccCCcc-c-CC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCc
Q 012718 224 ILPIEEIVHWSHDVGAKVLVDACQSVPHM-V-VD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGE 298 (458)
Q Consensus 224 ~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~-~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~ 298 (458)
++|.+++.++|+++|+++|+|++|..... . .. ....+..++++|++|.+|.+| +||+++++++++.+......
T Consensus 174 ~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~-- 251 (361)
T PRK00950 174 LIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTP-- 251 (361)
T ss_pred CcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcCC--
Confidence 99999999999999999999999973221 0 01 122335678899999999777 89999988876655432110
Q ss_pred ceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcC
Q 012718 299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHV 377 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~ 377 (458)
+ +.+.....++..+++ ..+ +++..++.+++++++.+.|. +++. +.
T Consensus 252 ------------------~---~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l~----~~~~-~~----- 297 (361)
T PRK00950 252 ------------------F---SLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNELP----FKVY-PS----- 297 (361)
T ss_pred ------------------C---CCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhcC----eeEC-CC-----
Confidence 0 122222333333332 222 45666777777777777765 4443 22
Q ss_pred ccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 378 QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 378 ~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.++++++++++.+..++.+.|.++ ||.+++|..+.. ..++++|+|++ +.+|++++++.|++++
T Consensus 298 -~~~~i~~~~~~~~~~~~~~~l~~~-gv~v~~~~~f~~------~~~~~lRis~~---~~~~~~~l~~~L~~il 360 (361)
T PRK00950 298 -EANFVLVDVTPMTAKEFCEELLKR-GVIVRDCTSFRG------LGDYYIRVSIG---TFEENERFLEILKEIV 360 (361)
T ss_pred -cceEEEEECCCCCHHHHHHHHHHC-CEEEeeCCccCC------CCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence 167899988777788999999987 999998763311 12578999998 6789999999999875
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=258.75 Aligned_cols=335 Identities=20% Similarity=0.230 Sum_probs=243.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~g~ 138 (458)
++.+.|+.+... ++++.+.+++.+.+..... + +.......++|+++|+++ | ++++ +|++|+|+
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~ 102 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALDEGWT----H-----YTPNAGIPELREAIAEYYKKFYGVDVDVD-NVIVTAGA 102 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCC----C-----CCCCCCcHHHHHHHHHHHHHHhCCCCCcc-cEEEeCCh
Confidence 456888888766 3567778888776543110 0 111223456777888776 3 4444 99999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
++++.+++.++ +++||.|++++|+|.+. ...++..|++++.++++++ +.+|++++++.++++++++++++
T Consensus 103 ~~al~~~~~~l----~~~g~~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~ 174 (391)
T PRK08361 103 YEATYLAFESL----LEEGDEVIIPDPAFVCY----VEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINY 174 (391)
T ss_pred HHHHHHHHHHh----cCCCCEEEEcCCCCccc----HHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeC
Confidence 99999999987 68999999999999854 4556677999999998764 46899999999998999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCC--CCCCcEEEecccCCCCCCc--eeEEEEecc
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKSD 285 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~--~~~~d~~~~s~~K~~gp~g--~G~l~~~~~ 285 (458)
|+||||.++| +++|+++|+++++++|+|++|+.... ...+. ....++++.|+||.+|.+| +||++++++
T Consensus 175 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~ 254 (391)
T PRK08361 175 PNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQ 254 (391)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHH
Confidence 9999999999 78899999999999999999873221 11111 1246789999999999778 999999988
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-IGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~-~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
+++.+..... +..++.+.....++..+++.-.. ..+++.+++++++++.+.+.|++++
T Consensus 255 ~~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 313 (391)
T PRK08361 255 VIKDMIKLHA---------------------YIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMP 313 (391)
T ss_pred HHHHHHHHHh---------------------hhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7766542211 01112232233333333321110 1267788888999999999999887
Q ss_pred CEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
++++..+.. +.++|++++ +.+..++.+.+.+++||.+.+|..+.. ..++++||+++ .+.+++++
T Consensus 314 ~~~~~~p~g------~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~------~~~~~iRi~~~--~~~~~l~~ 379 (391)
T PRK08361 314 HIKVFEPKG------AFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGK------AGEGYIRISYA--TSKEKLIE 379 (391)
T ss_pred CCeecCCCE------EEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCC------CCCCEEEEEec--CCHHHHHH
Confidence 877665541 447888887 357888988886544999999874421 12579999999 47789999
Q ss_pred HHHHHHHHHHh
Q 012718 443 FIHALNETVSF 453 (458)
Q Consensus 443 l~~~l~~~~~~ 453 (458)
.+++|.+++++
T Consensus 380 al~~l~~~l~~ 390 (391)
T PRK08361 380 AMERMEKALEE 390 (391)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-31 Score=257.96 Aligned_cols=337 Identities=17% Similarity=0.218 Sum_probs=242.9
Q ss_pred CCCeEEecCCCCC-----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------------CC
Q 012718 65 SKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------------AS 127 (458)
Q Consensus 65 ~~~~i~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------------~~ 127 (458)
+++.+.|..+... .+++.+.+++.+.+...... ++.......++|++++++++ ++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~--------~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~ 103 (412)
T PTZ00433 32 PKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECN--------GYPPTVGSPEAREAVATYWRNSFVHKESLKSTIK 103 (412)
T ss_pred CCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCC--------CCCCCCCcHHHHHHHHHHHHhhccccccccCCCC
Confidence 4788999988765 46888888888876531100 11112335578888888886 33
Q ss_pred CCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhh
Q 012718 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEML 205 (458)
Q Consensus 128 ~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l 205 (458)
+ ++|++|+|+++++.+++.++ +++||+|+++.|+|.. +...++..|++++.+++++ ++.+|++++++.+
T Consensus 104 ~-~~i~it~G~~~al~~~~~~~----~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~ 174 (412)
T PTZ00433 104 K-DNVVLCSGVSHAILMALTAL----CDEGDNILVPAPGFPH----YETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLV 174 (412)
T ss_pred h-hhEEEeCChHHHHHHHHHHh----cCCCCEEEEccCCccc----HHHHHHHcCCEEEEEecCccccCcCCHHHHHHHh
Confidence 4 49999999999999999988 6899999999999994 4666778899999999864 3678999999999
Q ss_pred cCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---c-C---CCCCCCCcEEEecccCCCCCC
Q 012718 206 SRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---V-V---DVQGLDADFLVASSHKMCGPT 275 (458)
Q Consensus 206 ~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~-~---~~~~~~~d~~~~s~~K~~gp~ 275 (458)
.+++++|++++++||||.+++ +++|+++|+++|++||+|++|..-.. + . .+......+++.|+||.+|.+
T Consensus 175 ~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p 254 (412)
T PTZ00433 175 DDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVP 254 (412)
T ss_pred ccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCC
Confidence 888999999999999999998 66778999999999999999973211 1 1 122222457888999999877
Q ss_pred c--eeEEEEe-c-----cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 276 G--IGFLFGK-S-----DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 276 g--~G~l~~~-~-----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
| +||+++. + ++++.+..... . ....+.....++..++..-.+.-++++++
T Consensus 255 GlRlG~~i~~~p~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~ 312 (412)
T PTZ00433 255 GWRLGWLLLVDPHGNGGDFLDGMKRLGM---------------------L-VCGPCSVVQAALGEALLNTPQEHLEQIVA 312 (412)
T ss_pred CeeEEEEEEeCCcccHHHHHHHHHHHhh---------------------c-cCCCChHHHHHHHHHHhcCcHHHHHHHHH
Confidence 7 9999972 2 23333322110 0 01223333333333333211122677788
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC------CChHHHHHHHhhhcCeEeccCCCCChhhHhhc
Q 012718 348 YEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~ 421 (458)
++++.++.+.+.|++..++.+..+. .+.++|++++. .+..++++.|.+++||.+.+|..+
T Consensus 313 ~~~~~r~~l~~~L~~~~~~~~~~p~------gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f-------- 378 (412)
T PTZ00433 313 KLEEGAMVLYNHIGECIGLSPTMPR------GSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIF-------- 378 (412)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCCC------eeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCcccc--------
Confidence 8889999999999876566654443 25688988863 246788888875449999998744
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+.++++|++++ ..++++++.+++|.+++++.++
T Consensus 379 ~~~~~iRis~~--~~~e~l~~al~~l~~~~~~~~~ 411 (412)
T PTZ00433 379 HMPGFTRLTIS--RPVEVLREAVERIKAFCERHKK 411 (412)
T ss_pred CCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhcc
Confidence 33679999998 4688999999999999986653
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-31 Score=253.55 Aligned_cols=321 Identities=19% Similarity=0.243 Sum_probs=240.8
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+++.|..+... .+++.+.+++.+....+..++.. ...++|+.+|+++|++++ +|++|+|+++++.+
T Consensus 32 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~-~i~~t~G~~~~l~~ 99 (367)
T PRK02731 32 ADIIKLASNENPLGPSPKAIEAIRAAADELHRYPDG-----------SGFELKAALAEKFGVDPE-RIILGNGSDEILEL 99 (367)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----------cHHHHHHHHHHHhCcCHH-HEEEcCCHHHHHHH
Confidence 567888877433 45777888888876544332211 124799999999999765 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++.++ +++||.|++++|+|. .+...++..|++++.++. .++.+|++.+++.+++++++|++++++||||.+
T Consensus 100 ~~~~l----~~~gd~vl~~~p~y~----~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~ 170 (367)
T PRK02731 100 LARAY----LGPGDEVIYSEHGFA----VYPIAAQAVGAKPVEVPA-KDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTY 170 (367)
T ss_pred HHHHh----cCCCCEEEEecCCHH----HHHHHHHHcCCeEEEecc-cCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcC
Confidence 98887 688999999999986 345556778999999998 456779999999998889999999999999999
Q ss_pred ccHHHHHHHHHhc--CcEEEEeccccCCcc------cCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCc
Q 012718 225 LPIEEIVHWSHDV--GAKVLVDACQSVPHM------VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 225 ~~l~~i~~l~~~~--~~~vivD~a~~~g~~------~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~ 293 (458)
+|.+++.++++.. |+++|+|++|..... .++ +......++++|++|.+|.+| +||+++++++++.+...
T Consensus 171 ~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~ 250 (367)
T PRK02731 171 LPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRV 250 (367)
T ss_pred CCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHc
Confidence 9999999988864 899999999873221 111 112235678889999888777 79999998877666533
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
... + ..+...+.++...++. ...+++++++++++.+++.+.|++. ++.+..+.
T Consensus 251 ~~~--------------------~---~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~- 303 (367)
T PRK02731 251 RQP--------------------F---NVNSLALAAAVAALDD--DAFVEKSRALNAEGMAWLTEFLAEL-GLEYIPSV- 303 (367)
T ss_pred cCC--------------------C---CCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCccCCCC-
Confidence 210 1 1122333333333332 1125778888889999999999887 77654221
Q ss_pred CCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
+++++++++ ..+..++.+.|.++ ||.++++..+ +.++++|++++ +.+|+++++++|+++++
T Consensus 304 ------g~~~~i~~~~~~~~~~~~~~L~~~-gI~v~~~~~~--------~~~~~iRis~~---~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 304 ------GNFILVDFDDGKDAAEAYQALLKR-GVIVRPVAGY--------GLPNALRITIG---TEEENRRFLAALKEFLA 365 (367)
T ss_pred ------ceEEEEECCCCCCHHHHHHHHHHC-CEEEEeCCCC--------CCCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence 779999985 45778999999987 9999987632 23579999987 67999999999998875
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=256.09 Aligned_cols=334 Identities=15% Similarity=0.113 Sum_probs=236.7
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~g 137 (458)
+.+.+.|+.+... ++++.+.+++.+.+..... .++.......++|+++|+++ | ++++++|++|+|
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G 100 (388)
T PRK07366 29 GKELIDLSLGSSDLPAPAHALEAIAQSLHDPST--------HGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIG 100 (388)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCccc--------CCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCC
Confidence 3567889888766 4577888888776542100 01111233457888888877 4 334325999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++++.+++.++ +++||.|++++|+|+.. ...++..|++++.++++++ +.+|++++++.+.+++++++++
T Consensus 101 s~~al~~~~~~l----~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~ 172 (388)
T PRK07366 101 SQEGTAHLPLAV----LNPGDFALLLDPGYPSH----AGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLS 172 (388)
T ss_pred cHHHHHHHHHHh----CCCCCEEEEcCCCCcch----HHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEe
Confidence 999999999987 78999999999999944 5666778999999999754 4578889988887788999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----c-cC---CCCCC-CCcEEEecccCCCCCCc--eeEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----M-VV---DVQGL-DADFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~-~~---~~~~~-~~d~~~~s~~K~~gp~g--~G~l~ 281 (458)
+|+||||.+++ +++|+++|+++|++||+|++|.--. . .. ++... ...++++|+||.+|.+| +||++
T Consensus 173 ~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v 252 (388)
T PRK07366 173 YPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAI 252 (388)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehc
Confidence 99999999999 5678889999999999999987221 1 11 12222 23578899999998777 99999
Q ss_pred EeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Q 012718 282 GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 282 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
.++++++.+...... +..++.+.....++ +++... ..-+++.++.+++.++++.+.|+
T Consensus 253 ~~~~li~~l~~~~~~--------------------~~~~~~~~~~~~a~-~~l~~~-~~~l~~~~~~~~~~r~~l~~~L~ 310 (388)
T PRK07366 253 GNAQLIQALRQVKAV--------------------VDFNQYRGILNGAI-AALTGP-QATVQQTVQIFRQRRDAFINALH 310 (388)
T ss_pred CCHHHHHHHHHHHhh--------------------cccCCCHHHHHHHH-HHHhCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887766543221 11122222222222 222211 12267788888999999999998
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
++ ++.+..+. .+.++|+++++ .+..++.+.+.++.||.+.+|..+.. ..++++||+++ .+.+
T Consensus 311 ~~-~~~~~~p~------~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~------~~~~~iRi~~~--~~~~ 375 (388)
T PRK07366 311 QI-GWPVPLPE------ATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGK------SGEGYVRFALV--HDPD 375 (388)
T ss_pred HC-CCcccCCC------eeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCc------CCCCeEEEEec--CCHH
Confidence 87 66544333 26689999874 24677877775444999999874421 11579999998 4789
Q ss_pred HHHHHHHHHHHHH
Q 012718 439 DVDEFIHALNETV 451 (458)
Q Consensus 439 di~~l~~~l~~~~ 451 (458)
++++++++|.+++
T Consensus 376 ~l~~~l~rl~~~l 388 (388)
T PRK07366 376 ILEEAVERIAAFL 388 (388)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988753
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=250.39 Aligned_cols=321 Identities=14% Similarity=0.165 Sum_probs=235.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+++.|+.+... ++|+.+.+++.+.+.....++. ....++|+++|++++++++ +|++|+|+++++..
T Consensus 20 ~~~i~l~~~~~~~~~p~~~~~a~~~~~~~~~~y~~-----------~~~~~lr~~ia~~~~~~~~-~i~it~Ga~~~l~~ 87 (356)
T PRK08056 20 DQLLDFSANINPLGMPVSLKRAIIDNLDCAERYPD-----------VEYRHLHQALARHHQVPAS-WILAGNGETESIFA 87 (356)
T ss_pred hhEEEeccccCCCCCCHHHHHHHHHHHHhcccCcC-----------ccHHHHHHHHHHHhCcChh-hEEECCCHHHHHHH
Confidence 567999988666 7888999999887764322211 1256899999999999876 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
++.++ .+|+ +++..|+|. .+...++..|++++.++.+++ ..+| +++.+.+.++++++++++|+||||
T Consensus 88 ~~~~l-----~~g~-viv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG 156 (356)
T PRK08056 88 VVSGL-----KPRR-AMIVTPGFA----EYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTG 156 (356)
T ss_pred HHHHh-----CCCC-EEEeCCCcH----HHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCC
Confidence 98865 4565 677788887 556677888999999998743 3444 355566778899999999999999
Q ss_pred cccc---HHHHHHHHHhcCcEEEEeccccCCc----ccC-CCCCCCCcEEEecccCCCCCCc--eeEEEEe-ccccccCC
Q 012718 223 SILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVV-DVQGLDADFLVASSHKMCGPTG--IGFLFGK-SDLLSAMP 291 (458)
Q Consensus 223 ~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~-~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~-~~~~~~l~ 291 (458)
..++ +++|+++|++++++||+|++|.--. ..+ .+...+.++++.|+||++|.+| +||++++ ++.++.+.
T Consensus 157 ~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~ 236 (356)
T PRK08056 157 LLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMR 236 (356)
T ss_pred CCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHH
Confidence 9999 7789999999999999999985211 101 1334457899999999999777 9999985 34544443
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
.... ..+.+.....++..+++. .. -..+.++.+++.++++.+.|++++++.+..+
T Consensus 237 ~~~~-----------------------~~~~~~~~~~~a~~~l~~-~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~ 291 (356)
T PRK08056 237 RQQM-----------------------PWSINAFAALAGEVILQD-RA-YQQATWQWLAEEGARFYQALCALPLLTVWPG 291 (356)
T ss_pred HhCC-----------------------CCchhHHHHHHHHHHhCC-HH-HHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC
Confidence 2211 112333333333333321 11 1456677888899999999988878776433
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
. ++++|++++. +..++.+.|.++ ||.+++|..+.. ...+++||+++ +.++.++++++|++++
T Consensus 292 ~-------~~~~~~~~~~-~~~~~~~~l~~~-gI~v~~~~~f~~------~~~~~iRis~~---~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 292 R-------ANYLFLRCER-PDIDLQRALLTQ-RILIRSCANYPG------LDSRYYRVAIR---SAAENERLLAALRNVL 353 (356)
T ss_pred C-------CcEEEEEcCC-ChHHHHHHHHHC-CeEEEECCCCCC------CCCCEEEEEEc---CHHHHHHHHHHHHHHH
Confidence 2 7788888864 356889999887 999998875421 12569999998 6799999999998875
Q ss_pred H
Q 012718 452 S 452 (458)
Q Consensus 452 ~ 452 (458)
+
T Consensus 354 ~ 354 (356)
T PRK08056 354 T 354 (356)
T ss_pred c
Confidence 4
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=255.60 Aligned_cols=334 Identities=15% Similarity=0.156 Sum_probs=240.2
Q ss_pred CCCeEEecCCCCC-----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC-----CCCCCcEEE
Q 012718 65 SKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN-----ASDSGEIVF 134 (458)
Q Consensus 65 ~~~~i~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g-----~~~~~~v~~ 134 (458)
+++++.|+.+... ++++.+.+++.+.+.....+ ++.......++|++++++++ ++++ +|++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~--------~Y~~~~g~~~lr~aia~~~~~~~~~~~~~-~i~~ 100 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYN--------GYAPTVGALSAREAIASYYHNPDGPIEAD-DVVL 100 (401)
T ss_pred CCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCC--------CCCCCCCCHHHHHHHHHHHhhcCCCCCHH-HEEE
Confidence 3677889887653 56788888888776542110 11112334578899999987 4444 8999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEE
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLV 212 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v 212 (458)
|+|+++++.+++.++ +++||.|++++|+|. .+...++..|++++.++++. ++.+|++.+++.++++++++
T Consensus 101 t~G~~~al~~~~~~l----~~~gd~v~i~~P~y~----~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v 172 (401)
T TIGR01264 101 CSGCSHAIEMCIAAL----ANAGQNILVPRPGFP----LYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAAL 172 (401)
T ss_pred CcChHHHHHHHHHHh----CCCCCEEEEeCCCCh----hHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEE
Confidence 999999999999988 679999999999998 45667788899999998764 36789999999988889999
Q ss_pred EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCC---CCCCCCcEEEecccCCCCCCc--eeEE
Q 012718 213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVD---VQGLDADFLVASSHKMCGPTG--IGFL 280 (458)
Q Consensus 213 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~---~~~~~~d~~~~s~~K~~gp~g--~G~l 280 (458)
++++++||||.+++ +++|+++|+++|++||+|++|..-. .... +......+++.|+||.|+.+| +||+
T Consensus 173 ~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~i 252 (401)
T TIGR01264 173 IVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWI 252 (401)
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEE
Confidence 99999999999998 7788999999999999999997311 1111 222123578899999988888 9999
Q ss_pred EEecc------ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 012718 281 FGKSD------LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAK 354 (458)
Q Consensus 281 ~~~~~------~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~ 354 (458)
++++. .++.+..... ...+++.....++...++...+.-+++.++.+++.++
T Consensus 253 v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~ 310 (401)
T TIGR01264 253 IIHDRRGILRDIRDGLVKLSQ----------------------RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAM 310 (401)
T ss_pred EecCcchhHHHHHHHHHHHhh----------------------ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 98752 2222211100 0112233333444444432111226677788888899
Q ss_pred HHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEE
Q 012718 355 YLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR 428 (458)
Q Consensus 355 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lR 428 (458)
++.+.|++++++.+..+. .+.++|++++. .+..++.+.+.+++||.+.+|..+ +.++++|
T Consensus 311 ~l~~~L~~~~~~~~~~p~------~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f--------~~~~~iR 376 (401)
T TIGR01264 311 LCYGALAAVPGLRPVMPS------GAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCF--------EYPGFFR 376 (401)
T ss_pred HHHHHHHhCCCCcccCCC------eeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhc--------CCCCeEE
Confidence 999999988776654443 26688998752 245778888764349999998743 3368999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 429 ASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 429 is~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++++ .+.+++++.+++|.+++++
T Consensus 377 is~~--~~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 377 VVLT--VPVVMMEEACSRIQEFCER 399 (401)
T ss_pred EEEc--CCHHHHHHHHHHHHHHHhc
Confidence 9999 4689999999999998865
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=245.62 Aligned_cols=331 Identities=14% Similarity=0.049 Sum_probs=255.0
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCC-cEEEeCChhHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSG-EIVFTKNATEAINLVAY 147 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-~v~~t~g~t~a~~~~~~ 147 (458)
.++.+.........+++++.+++.+..+||.. .+..+....+..+++++.+++++|+++++ ..+||+|||+|+..++.
T Consensus 25 ~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s-~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~ 103 (374)
T PLN03032 25 VHFGYPYNLDFDYGELSQLMKYSINNLGDPFI-ESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGIL 103 (374)
T ss_pred hccCCCchhccChHHHHHHHHhcccCCCCCcc-cCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHH
Confidence 45555555545556788888887766677754 45666678899999999999999998762 24999999999999887
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEecccCcCccc
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNMLASI 224 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~ 224 (458)
+.+. ..++..|+++..+|+|+ .+.++..|..++.||++++|.+|+++|+++|++ ++.+|++++.+|.+|.+
T Consensus 104 ~ar~--~~~~~~vi~s~~~H~Sv----~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~i 177 (374)
T PLN03032 104 VGRE--VFPDGILYASRESHYSV----FKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAV 177 (374)
T ss_pred HHHH--hCCCcEEEeCCCceeHH----HHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccC
Confidence 6531 23456899999999976 455666788999999999999999999999987 47899999999999999
Q ss_pred ccHHHHHHHHHhcC-----cEEEEeccccCCcccC-------CCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCC
Q 012718 225 LPIEEIVHWSHDVG-----AKVLVDACQSVPHMVV-------DVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 225 ~~l~~i~~l~~~~~-----~~vivD~a~~~g~~~~-------~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~ 291 (458)
.|+++|+++|+++| +|+++|++++.+..|+ ++. .++|.++.|+||++| |.|+|+++++++.++.+.
T Consensus 178 dpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~ 256 (374)
T PLN03032 178 DDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALS 256 (374)
T ss_pred CCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHhhc
Confidence 99999999999996 5999999999887764 333 368999999999887 999999999987665443
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
... .|.. ....--.|+.+-...+.++.++..+...|+.++.+++.++++++.+.|++. ++++...
T Consensus 257 ~~~--------~Yl~------~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~ 321 (374)
T PLN03032 257 QNV--------EYLN------SRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLN 321 (374)
T ss_pred cCC--------cccC------CCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEC
Confidence 110 0111 011112467776777888899999988899999999999999999999987 7775544
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+. ..+|+|+-+. .+. +. + |..+.+- +..+|+.+.+..+.+.+|+|++.|++
T Consensus 322 p~------~~~V~f~~~~--~~~----~~-~-~w~l~~~-------------~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 322 EL------SSTVVFERPM--DEA----FI-K-KWQLACE-------------GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred CC------ceEEEEcCCC--cHh----Hh-h-eeeeccc-------------CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 42 6678887662 111 22 3 5444321 35899999988899999999988865
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=253.01 Aligned_cols=335 Identities=14% Similarity=0.160 Sum_probs=244.4
Q ss_pred CCCeEEecCCCC-C-CCcHHHHHHHHHHHHHhc-cCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 65 SKKLVYLDNAAT-S-QKPIAVLKALQNYYEAYN-SNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 65 ~~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
+.++++|..+.. + ..++.+.+++.+.+.++. .++. ..+.. +.....+++++.+|+++|.+ ++++++|+++|
T Consensus 37 g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~-s~~~~--G~~~~~~~le~~ia~~~g~~---~~ii~~~~~~a 110 (393)
T TIGR01822 37 GREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSS-VRFIC--GTQDIHKELEAKIAAFLGTE---DTILYASCFDA 110 (393)
T ss_pred CceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCC-cCccc--CChHHHHHHHHHHHHHhCCC---cEEEECchHHH
Confidence 466788877764 4 457788999988887642 2221 11111 22566788999999999985 56777888999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEe
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIH 215 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~ 215 (458)
+..++.++ +++||.|++++++|++....+ +..+.+...++ ..|++++++.+++ ++++|+++
T Consensus 111 ~~~~~~~l----~~~gd~vi~~~~~~~s~~~~~----~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~ 177 (393)
T TIGR01822 111 NGGLFETL----LGAEDAIISDALNHASIIDGV----RLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATD 177 (393)
T ss_pred HHHHHHHh----CCCCCEEEEeccccHHHHHHH----HhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEe
Confidence 99999887 789999999999999765433 33455554443 2588999888874 67899999
Q ss_pred cccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccC---------CCCCCCCcEEEecccCCCCCCceeEEEEeccc
Q 012718 216 HISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---------DVQGLDADFLVASSHKMCGPTGIGFLFGKSDL 286 (458)
Q Consensus 216 ~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~ 286 (458)
+++|+||.+.|+++|+++|++||+++|+|++|+.|.... ++. .++|++++|+||++++..+||+++++++
T Consensus 178 ~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g~r~G~~~~~~~~ 256 (393)
T TIGR01822 178 GVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGGASGGFTTARKEV 256 (393)
T ss_pred CCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhCCCcEEEEeCHHH
Confidence 999999999999999999999999999999998765421 121 2589999999997664447999999887
Q ss_pred cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Q 012718 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~ 366 (458)
++.+....... ...++.+...+.++..+++.+.. .++++++++++.+++.+.|++. ++
T Consensus 257 ~~~l~~~~~~~-------------------~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~ 314 (393)
T TIGR01822 257 VELLRQRSRPY-------------------LFSNSLPPAVVGASIKVLEMLEA--SNELRDRLWANTRYFRERMEAA-GF 314 (393)
T ss_pred HHHHHHhCccc-------------------eecCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 76654321100 01245555556666677776643 5778899999999999999876 76
Q ss_pred EEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 367 RIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
++..+. ++++.+.+++ .+..++.+.|.++ ||.+. +..+... -.....+|++++.+++++||+++++
T Consensus 315 ~~~~~~-------~~~~~i~~~~~~~~~~l~~~L~~~-gI~v~-~~~~~~~----~~~~~~iRis~~~~~t~edi~~~~~ 381 (393)
T TIGR01822 315 DIKPAD-------HPIIPVMLYDAVLAQRFARRLLEE-GIYVT-GFFYPVV----PKGQARIRVQISAAHTEEQLDRAVE 381 (393)
T ss_pred CCCCCC-------CCEEEEEeCCHHHHHHHHHHHHHC-CeeEe-eeCCCCC----CCCCceEEEEECCCCCHHHHHHHHH
Confidence 654222 5567776653 3467899999988 99887 3322110 0013579999999999999999999
Q ss_pred HHHHHHHhh
Q 012718 446 ALNETVSFF 454 (458)
Q Consensus 446 ~l~~~~~~~ 454 (458)
+|.++++++
T Consensus 382 ~l~~~~~~~ 390 (393)
T TIGR01822 382 AFTRIGREL 390 (393)
T ss_pred HHHHHHHHh
Confidence 999988754
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=253.15 Aligned_cols=335 Identities=17% Similarity=0.201 Sum_probs=243.3
Q ss_pred CCCeEEecCCCCC-----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-----CCCcEEE
Q 012718 65 SKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVF 134 (458)
Q Consensus 65 ~~~~i~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~~v~~ 134 (458)
+.+++.|..+.++ ++++.+.+++.+.+.....+ .+.......++|+.++++++.. ..++|++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~--------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~ 101 (403)
T TIGR01265 30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFN--------GYAPSVGALAAREAVAEYLSSDLPGKLTADDVVL 101 (403)
T ss_pred CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCC--------CCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEE
Confidence 5788999998763 67788888888876532111 1112334567899999999852 2248999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEE
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLV 212 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v 212 (458)
|+|+|+|+.+++.++ .++||+|++++|+|. .+...++..|++++.+++++ ++.+|++.+++.+.++++++
T Consensus 102 t~G~t~al~~~~~~l----~~~gd~Vlv~~p~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v 173 (403)
T TIGR01265 102 TSGCSQAIEICIEAL----ANPGANILVPRPGFP----LYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAI 173 (403)
T ss_pred ecChHHHHHHHHHHh----CCCCCEEEEeCCCch----hHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEE
Confidence 999999999999988 589999999999998 44666778899999998753 46789999999998889999
Q ss_pred EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---c-CC---CCCCCCcEEEecccCCCCCCc--eeEE
Q 012718 213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---V-VD---VQGLDADFLVASSHKMCGPTG--IGFL 280 (458)
Q Consensus 213 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~-~~---~~~~~~d~~~~s~~K~~gp~g--~G~l 280 (458)
++++++||||.+++ +++|.++|+++|+++|+|++|..-.. + .. +......++++|+||.|+.+| +||+
T Consensus 174 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~ 253 (403)
T TIGR01265 174 VVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWI 253 (403)
T ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEE
Confidence 99999999999998 78899999999999999999873211 1 11 222224678889999887777 9999
Q ss_pred EEec--cc-----cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012718 281 FGKS--DL-----LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353 (458)
Q Consensus 281 ~~~~--~~-----~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~ 353 (458)
++.+ ++ ++.+..+.. . ...++...+.++..+++...+.-+++.++++++.+
T Consensus 254 v~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 311 (403)
T TIGR01265 254 IIHDPHGIFRDTVLQGLKNLLQ---------------------R-ILGPATIVQGALPDILENTPQEFFDGKISVLKSNA 311 (403)
T ss_pred EEeCchhhhHHHHHHHHHHHhh---------------------h-hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 9853 22 222221110 0 01233334444444554211122566777888888
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeE
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASA 427 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~l 427 (458)
+++.+.|+.++++++..+. .+.++|++++. .+..++.+.+.++.||.+.+|..+ +.++++
T Consensus 312 ~~l~~~L~~~~~~~~~~p~------~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f--------~~~~~i 377 (403)
T TIGR01265 312 ELCYEELKDIPGLVCPKPE------GAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAF--------GLPNWV 377 (403)
T ss_pred HHHHHHHhcCCCceecCCC------ceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCcccc--------CCCCeE
Confidence 9999999888777654443 16789998863 256788888654449999998744 337899
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 428 RASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 428 Ris~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
||+++ ...+.+++.+++|.+++++
T Consensus 378 Ris~~--~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 378 RITIT--VPESMLEEACSRIKEFCER 401 (403)
T ss_pred EEEec--CCHHHHHHHHHHHHHHHHh
Confidence 99999 4678999999999988865
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=253.01 Aligned_cols=336 Identities=18% Similarity=0.166 Sum_probs=235.8
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC---CCCCcEEEeC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA---SDSGEIVFTK 136 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~---~~~~~v~~t~ 136 (458)
+++.+.|+.+... ++|+.+.+++.+.+.....++. .....++|+.+++++ |. +++++|++|+
T Consensus 28 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~Y~~----------~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~ 97 (396)
T PRK09147 28 DLPPISLSIGEPKHPTPAFIKDALAANLDGLASYPT----------TAGLPALREAIAAWLERRYGLPALDPATQVLPVN 97 (396)
T ss_pred CCCeEecCCCCCCCCCCHHHHHHHHHHhhhhcCCCC----------CCCCHHHHHHHHHHHHHHhCCCcCCccceEEECC
Confidence 5788999888766 5577888888776543222211 122335777777765 64 3333899999
Q ss_pred ChhHHHHHHHHHcCCCCCCC---CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceE
Q 012718 137 NATEAINLVAYSWGLSNLKS---GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKL 211 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~---g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~ 211 (458)
|+++++.+++.++ +++ ||.|+++.|+|.. +...++..|++++.+|++++ +.+|++.+++.+.+++++
T Consensus 98 G~~~al~~~~~~l----~~~~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~ 169 (396)
T PRK09147 98 GSREALFAFAQTV----IDRDGPGPLVVCPNPFYQI----YEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQL 169 (396)
T ss_pred ChHHHHHHHHHHH----cCCCCCCCEEEEcCCCccc----hHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEE
Confidence 9999999999988 678 8999999999984 45566778999999998744 568999998888778999
Q ss_pred EEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc-----ccCC-------C--CCCCCcEEEecccCCCCC
Q 012718 212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH-----MVVD-------V--QGLDADFLVASSHKMCGP 274 (458)
Q Consensus 212 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~-----~~~~-------~--~~~~~d~~~~s~~K~~gp 274 (458)
+++++|+||||.+++ +++|+++|++|+++||+|++|..-. .+.. + ...+..+++.|+||.++.
T Consensus 170 i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 249 (396)
T PRK09147 170 LFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNV 249 (396)
T ss_pred EEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCC
Confidence 999999999999998 6788889999999999999998422 1111 1 112356899999998888
Q ss_pred Cc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 012718 275 TG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 275 ~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l 352 (458)
+| +||++.++++++.+..... +...+.+...+.+...++.. ..-+.+.++.+++.
T Consensus 250 ~GlRiG~~~~~~~l~~~~~~~~~---------------------~~~~~~~~~~q~a~~~~~~~--~~~~~~~~~~~~~~ 306 (396)
T PRK09147 250 PGLRSGFVAGDAALLKKFLLYRT---------------------YHGCAMPPAVQAASIAAWND--EAHVRENRALYREK 306 (396)
T ss_pred ccceeeeecCCHHHHHHHHHHhh---------------------hcccCCCHHHHHHHHHHhcc--hhHHHHHHHHHHHH
Confidence 78 9999999887766543221 00112233233332233321 11256677778888
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC
Q 012718 353 AKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH 432 (458)
Q Consensus 353 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~ 432 (458)
++.+.+.|++. +.+..+. .+.++|++++ .+..++.+.|.++.||.+.+|..+.......-+..+++||+++
T Consensus 307 ~~~~~~~L~~~--~~~~~p~------~g~f~~~~~~-~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~ 377 (396)
T PRK09147 307 FDAVTPILAPV--LDVQLPD------AGFYLWAKVP-GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALV 377 (396)
T ss_pred HHHHHHHHHHh--cCCCCCC------eeEEEEEECC-CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEec
Confidence 88888888764 3332222 2668999987 4567788887643499999987553211000112579999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 012718 433 FYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 433 ~~~t~~di~~l~~~l~~~~~ 452 (458)
.+++++++++++|.++++
T Consensus 378 --~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 378 --APLAECVEAAERIVDFCR 395 (396)
T ss_pred --CCHHHHHHHHHHHHHHhc
Confidence 468899999999988764
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=253.67 Aligned_cols=333 Identities=18% Similarity=0.223 Sum_probs=243.6
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~g~ 138 (458)
++.+.|..+... ++++.+.+++.+.+..... . +........+|+.+++++ | .++ ++|++|+|+
T Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------Y~~~~g~~~lr~~ia~~~~~~~~~~~~~-~~i~~~~g~ 100 (393)
T PRK05764 31 RDVISLGAGEPDFDTPEHIKEAAIEALDDGKT--K-------YTPAAGIPELREAIAAKLKRDNGLDYDP-SQVIVTTGA 100 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCC--C-------cCCCCChHHHHHHHHHHHHHHhCCCCCH-HHEEEeCCc
Confidence 567888887766 4467777888777653110 0 111233457788888877 3 344 389999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
++++..++.++ +++||.|++++|+|.. +...++..|++++.++.+++ +.+|++.+++.++++++++++++
T Consensus 101 ~~a~~~~~~~~----~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 172 (393)
T PRK05764 101 KQALYNAFMAL----LDPGDEVIIPAPYWVS----YPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNS 172 (393)
T ss_pred HHHHHHHHHHh----cCCCCEEEecCCCCcc----hHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEEC
Confidence 99999999987 6899999999999984 45566778999999998743 56799999999988899999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc------cC-C--CCCCCCcEEEecccCCCCCCc--eeEEEE
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VV-D--VQGLDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~------~~-~--~~~~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
++||||.+++ +++|.++|++||+++++|++|+.... ++ . .+..+.+++++|++|.+|.+| +||++.
T Consensus 173 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~ 252 (393)
T PRK05764 173 PSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAG 252 (393)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEec
Confidence 9999999998 77899999999999999999873221 11 1 122347899999999988777 899999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+...... ....++.....++...++.. ...+++.++++.++++.+.+.|++
T Consensus 253 ~~~~~~~~~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 310 (393)
T PRK05764 253 PKELIKAMSKLQSH---------------------STSNPTSIAQYAAVAALNGP-QDEVEEMRQAFEERRDLMVDGLNE 310 (393)
T ss_pred CHHHHHHHHHHHhh---------------------cccCCChHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98877766533211 01123333333444444311 122567778888889999999998
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCCC------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCC
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVENI------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNT 436 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t 436 (458)
++++++..+.. +.++|+.++.. +..++.+.+.+++||.+.+|..+. ..+++|++++ .+
T Consensus 311 ~~g~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~--------~~~~vRis~~--~~ 374 (393)
T PRK05764 311 IPGLECPKPEG------AFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFG--------APGYVRLSYA--TS 374 (393)
T ss_pred CCCCcccCCCc------ceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccC--------CCCEEEEEec--CC
Confidence 87887765431 44778777642 237888877654599999987542 2679999998 57
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012718 437 KEDVDEFIHALNETVSFF 454 (458)
Q Consensus 437 ~~di~~l~~~l~~~~~~~ 454 (458)
.+++++++++|.+++++.
T Consensus 375 ~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 375 LEDLEEGLERIERFLESL 392 (393)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998754
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=252.38 Aligned_cols=333 Identities=15% Similarity=0.165 Sum_probs=240.7
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C---CCCCCcEEEeC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N---ASDSGEIVFTK 136 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g---~~~~~~v~~t~ 136 (458)
+.+.+.|+.+... .+++.+.+++.+.+..... ..+ . .....++|+++++++ | ++++++|++|+
T Consensus 43 ~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~----~~Y----~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~ 113 (410)
T PRK06290 43 DMELIDMGVGEPDEMADESVVEVLCEEAKKPEN----RGY----A-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSI 113 (410)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCC----CCC----C-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEcc
Confidence 3568889888766 4566777777765532100 001 1 123457778888775 4 33433799999
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEE
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVI 214 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~ 214 (458)
|+++++..++.++ +++||.|+++.|+|+. +...++..|++++.++++++ +.+|++.+++.+.+++++|++
T Consensus 114 Gs~~al~~~~~~~----~~~gd~Vlv~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l 185 (410)
T PRK06290 114 GSKPALAMLPSCF----INPGDVTLMTVPGYPV----TGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYL 185 (410)
T ss_pred CHHHHHHHHHHHh----CCCCCEEEEeCCCCcc----HHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEE
Confidence 9999999999988 7899999999999984 46667778999999999854 566999999988888999999
Q ss_pred ecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCC---CCC-CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 215 HHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVD---VQG-LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 215 ~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~---~~~-~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
++|+||||.+++ +++|.++|+++|++||+|++|..... +.. +.. .+.++++.|+||.+|.+| +||++.
T Consensus 186 ~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~ 265 (410)
T PRK06290 186 NYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVG 265 (410)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEe
Confidence 999999999999 57888889999999999999983221 112 221 246799999999998788 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+...... ...+++.. ...++..+++.- + -+++.++++++.++++.+.|++
T Consensus 266 ~~~l~~~l~~~~~~--------------------~~~~~~~~-~q~aa~~~l~~~-~-~~~~~~~~~~~~~~~l~~~L~~ 322 (410)
T PRK06290 266 NELIVKAFATVKDN--------------------NDSGQFIA-IQKAGIYALDHP-E-ITEKIREKYSRRLDKLVKILNE 322 (410)
T ss_pred CHHHHHHHHHHHhc--------------------cccCCcHH-HHHHHHHHhhCc-H-HHHHHHHHHHHHHHHHHHHHHh
Confidence 98877666533221 11122222 233333444321 1 1567788888999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCC--------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC-C
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVEN--------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH-F 433 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~-~ 433 (458)
. ++.+..+. .+.++|+++++ .+..++.+.|.++.++.+.+|..+ .+++||+++ .
T Consensus 323 ~-g~~~~~p~------g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~----------~~~lRi~~~~~ 385 (410)
T PRK06290 323 V-GFKAEMPG------GTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDA----------GHFLRFSVTFE 385 (410)
T ss_pred C-CCeecCCC------eeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccc----------cCeEEEEEEcc
Confidence 7 77765443 14577788863 256789999988845666666522 368999997 3
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 012718 434 YNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~~~~ 454 (458)
-.++++.++++++|++.+.++
T Consensus 386 ~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 386 AKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred cccccchhHHHHHHHHHHhhc
Confidence 348899999999999999865
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=253.49 Aligned_cols=331 Identities=16% Similarity=0.187 Sum_probs=230.7
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~g 137 (458)
+++.+.|+.+... +.|..+.+++.+.+... .. ..+.......++|+++++++ |. ++++.|++|+|
T Consensus 34 g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~--~~------~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G 105 (394)
T PRK05942 34 GLDLIDLGMGNPDGAAPQPVIEAAIAALADP--QN------HGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLG 105 (394)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCC--CC------ccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccC
Confidence 3567888877655 34566777766655321 00 11122334457778888877 43 33325889999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++++..++.++ +++||+|++++|+|+.. ...+...|++++.++++.+ +.+|++++++.+.+++++++++
T Consensus 106 ~~~al~~~~~~~----~~~gd~Vlv~~P~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~ 177 (394)
T PRK05942 106 SKEGLTHLALAY----VNPGDVVLVPSPAYPAH----FRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFN 177 (394)
T ss_pred hHHHHHHHHHHh----CCCCCEEEEcCCCCcch----HHHHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEc
Confidence 999999999887 78999999999999964 3334567999999998743 4689999999998899999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCC---CCC-CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVD---VQG-LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~---~~~-~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+|+||||.+++ +++|.++|+++|++||+|++|..... ... +.. .+..+++.|+||.||.+| +||++.
T Consensus 178 ~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~ 257 (394)
T PRK05942 178 YPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVG 257 (394)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeec
Confidence 99999999999 77899999999999999999873221 111 221 234578899999888777 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+...... ...+.+.....++..+++.... .+++++++++++++++.+.|++
T Consensus 258 ~~~l~~~l~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~ 315 (394)
T PRK05942 258 NRHIIQGLRTLKTN---------------------LDYGIFSALQKAAETALQLPDS-YLQQVQERYRTRRDFLIQGLGE 315 (394)
T ss_pred CHHHHHHHHHHHhh---------------------cccCCCHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 98887776543210 0112232334455555554332 3677888889999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
. ++++..+. .+.++|++++. .+..++...+.+++||.+.+|..+.. ..++++|++++ .+.+.+.
T Consensus 316 ~-~~~~~~~~------~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~------~~~~~iRis~~--~~~~~l~ 380 (394)
T PRK05942 316 L-GWNIPPTK------ATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGE------GGEGYVRISLI--ADCDRLG 380 (394)
T ss_pred C-CCeecCCC------eeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCc------CCCCeEEEEec--CCHHHHH
Confidence 7 77665443 14488999874 56677777655444999998864321 12579999997 3444554
Q ss_pred HHHHHHH
Q 012718 442 EFIHALN 448 (458)
Q Consensus 442 ~l~~~l~ 448 (458)
+.+++|.
T Consensus 381 ~~l~~l~ 387 (394)
T PRK05942 381 EALDRLK 387 (394)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-30 Score=241.31 Aligned_cols=323 Identities=19% Similarity=0.262 Sum_probs=254.5
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC-CCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN-ASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~~v~~t~g~t~a~~ 143 (458)
++++.|+.+.+. ++|+.+.+++.+.+..++.+|+. ...++++++++++| .+++ +|++++|+++.+.
T Consensus 22 ~~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd~-----------~~~~l~~a~a~~~~~~~~~-~V~~gnGsde~i~ 89 (356)
T COG0079 22 PGIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPDP-----------DYRELRAALAEYYGVVDPE-NVLVGNGSDELIE 89 (356)
T ss_pred ccceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----------cHHHHHHHHHHHhCCCCcc-eEEEcCChHHHHH
Confidence 468999999888 66688999998888776666643 24489999999999 5544 8999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
.+.+++ ..+||+|+++.|+|. .+...++..|++++.++..+ +.+|++.+.+.+++++++|++++|+||||.
T Consensus 90 ~l~~~~----~~~gd~vl~~~Ptf~----~Y~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~ 160 (356)
T COG0079 90 LLVRAF----VEPGDTVLIPEPTFS----MYEIAAQLAGAEVVKVPLKE-FRLDLDAILAAIRDKTKLVFLCNPNNPTGT 160 (356)
T ss_pred HHHHHh----hcCCCEEEEcCCChH----HHHHHHHhcCCeEEEecccc-cccCHHHHHHhhhcCCCEEEEeCCCCCCCC
Confidence 999998 789999999999999 55777888899999999988 888999999999989999999999999999
Q ss_pred cccHHHHHHHHHhc--CcEEEEeccccCCccc--CCC-CCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcccc
Q 012718 224 ILPIEEIVHWSHDV--GAKVLVDACQSVPHMV--VDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGG 296 (458)
Q Consensus 224 ~~~l~~i~~l~~~~--~~~vivD~a~~~g~~~--~~~-~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g 296 (458)
.++.++|.+++... +.++++|++|.--.-+ +.+ ...+.-+++-|+||.||..| +|+++.++++++.+......
T Consensus 161 ~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p 240 (356)
T COG0079 161 LLPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPP 240 (356)
T ss_pred CCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCC
Confidence 99988877777653 8899999999822211 121 12223577779999999888 99999999998888766543
Q ss_pred CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCC
Q 012718 297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSE 375 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~ 375 (458)
| +.+.....+..++++.-.. +++..+++.+.++++.+.|++++ +. +....
T Consensus 241 ~-----------------------~v~~~a~~aa~aal~~~~~--~~~~~~~~~~~r~rl~~~l~~~~-~~~v~pS~--- 291 (356)
T COG0079 241 F-----------------------NVSSPALAAAIAALRDADY--LEESVERIREERERLYAALKALG-LFGVFPSQ--- 291 (356)
T ss_pred C-----------------------CCCHHHHHHHHHHcccHHH--HHHHHHHHHHHHHHHHHHHHhCC-CCeecCCC---
Confidence 3 2344444555555544422 67788889999999999999984 44 44333
Q ss_pred cCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 376 HVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 376 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++|+.++++......+.+.|.++ ||.+|.... . ...++++||+++ +.+|.++++++|.++++.
T Consensus 292 ----aNFvlv~~~~~~~~~l~~~L~~~-giivR~~~~-~------~~~~~~lRitvg---t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 292 ----ANFVLVRVPDAEAAALAEALLKK-GILVRDCSS-V------GLLPGYLRITVG---TPEENDRLLAALREVLKG 354 (356)
T ss_pred ----CcEEEEECCCccHHHHHHHHHHC-CEEEEeCCC-C------CCCCCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence 78999998742255799999988 999986431 1 122679999999 778889999999998864
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=251.94 Aligned_cols=334 Identities=18% Similarity=0.200 Sum_probs=235.8
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C----CCCCCcEEEe
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N----ASDSGEIVFT 135 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g----~~~~~~v~~t 135 (458)
+.+.+.|+.+... .+|+.+.+++.+.+.....++. .....++|+++|+++ | ++++++|++|
T Consensus 27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~----------~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it 96 (393)
T TIGR03538 27 SKPPIALSIGEPKHPTPAFVLEALRENLHGLSTYPT----------TKGLPELRQAIARWLERRFDLPTGVDPERHVLPV 96 (393)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhhccCCCCC----------CCCCHHHHHHHHHHHHHhhCCcccCCCCceEEEC
Confidence 4678999988776 5678888888876543222211 222346778888777 3 3443379999
Q ss_pred CChhHHHHHHHHHcCCCCCCCCCE--EEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceE
Q 012718 136 KNATEAINLVAYSWGLSNLKSGDE--VILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKL 211 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~~~~g~~--vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~ 211 (458)
+|+++++.+++.++ +++||. |+++.|+|.. +...++..|++++.++++++ +.+|++.+++.+.+++++
T Consensus 97 ~Ga~~al~~~~~~l----~~~gd~~~vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~ 168 (393)
T TIGR03538 97 NGTREALFAFAQAV----INPGQAPLVVMPNPFYQI----YEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQL 168 (393)
T ss_pred CCcHHHHHHHHHHH----cCCCCcceEEecCCCCcc----hHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceE
Confidence 99999999999988 688885 9999999984 45567778999999998644 467999999988788999
Q ss_pred EEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-----cCC-------C--CCCCCcEEEecccCCCCC
Q 012718 212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVD-------V--QGLDADFLVASSHKMCGP 274 (458)
Q Consensus 212 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~-------~--~~~~~d~~~~s~~K~~gp 274 (458)
+++++++||||.+++ +++|+++|+++|++||+|++|..-.. +.. . ......+++.|+||.|+.
T Consensus 169 i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~ 248 (393)
T TIGR03538 169 LFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNL 248 (393)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCC
Confidence 999999999999999 67889999999999999999973211 111 1 012345889999998887
Q ss_pred Cc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 012718 275 TG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 275 ~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l 352 (458)
+| +||++.++++++.+..+.. +...+.+...+.++..++.. ...+++.++.+++.
T Consensus 249 ~GlRvG~~i~~~~l~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~ 305 (393)
T TIGR03538 249 PGLRSGFVAGDAEILKAFLRYRT---------------------YHGCAMPIPTQLASIAAWND--EQHVRENRALYREK 305 (393)
T ss_pred cccceEEEecCHHHHHHHHHHHH---------------------hhccCcCHHHHHHHHHHhcC--hHHHHHHHHHHHHH
Confidence 77 9999999887766543221 00112232233333333321 12256777788888
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC
Q 012718 353 AKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH 432 (458)
Q Consensus 353 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~ 432 (458)
++.+.+.|++. +.+..+. .+.++|++++ .+..++.+.+.++.||.+.+|..+.......-...+++||+++
T Consensus 306 ~~~~~~~L~~~--~~~~~p~------gg~f~~~~~~-~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~ 376 (393)
T TIGR03538 306 FAAVLEILGQV--LDLELPD------AGFYLWPKVP-GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALV 376 (393)
T ss_pred HHHHHHHHHhh--CcccCCC------eeEEEEEECC-CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEec
Confidence 88888888764 3332232 2668999988 4567888887654499999998653211000112579999998
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 012718 433 FYNTKEDVDEFIHALNET 450 (458)
Q Consensus 433 ~~~t~~di~~l~~~l~~~ 450 (458)
. +.+++++++++|.++
T Consensus 377 ~--~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 377 A--PLEECVEAAERIRSF 392 (393)
T ss_pred C--CHHHHHHHHHHHHHh
Confidence 4 789999999988765
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=251.18 Aligned_cols=331 Identities=16% Similarity=0.181 Sum_probs=234.8
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc------CCCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~v~~t~g~ 138 (458)
++.+.|..+... ++++.+.+++.+..... . . .+.......++|+++++++ +.+++ +|++|+|+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~---~--~----~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~-~i~it~G~ 98 (384)
T PRK06348 29 PDIIDLSLGDPDLITDESIINAAFEDAKKG---H--T----RYTDSGGDVELIEEIIKYYSKNYDLSFKRN-EIMATVGA 98 (384)
T ss_pred CCcEEcCCCCCCCCCCHHHHHHHHHHHhcC---C--C----CCCCCCCcHHHHHHHHHHHHHHhCCCCChh-hEEEcCCh
Confidence 345777777655 34555655544433221 0 0 0111223346777777777 34454 99999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
++|+.+++.++ +++||.|++++|+|.. +...++..|++++.++..+ ++.+|++.+++.+.+++++|++++
T Consensus 99 ~~al~~~~~~~----~~~gd~vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~ 170 (384)
T PRK06348 99 CHGMYLALQSI----LDPGDEVIIHEPYFTP----YKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNS 170 (384)
T ss_pred HHHHHHHHHHh----cCCCCEEEEeCCCCcc----hHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeC
Confidence 99999999988 7899999999999984 4666667799999998753 356899999999988899999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-----cC-CCCC-CCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VV-DVQG-LDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-----~~-~~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
++||||.+++ +++|.++|+++|++||+|++|..... ++ .+.. .+..+++.|+||.+|.+| +||+++++
T Consensus 171 p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~ 250 (384)
T PRK06348 171 PNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPD 250 (384)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCH
Confidence 9999999998 67888889999999999999983221 11 1221 235788899999988677 99999998
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
++++.+...... ...+.+.....++..++...... ++++++.++++++++.+.|+.++
T Consensus 251 ~~~~~~~~~~~~---------------------~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~r~~~~~~~L~~~~ 308 (384)
T PRK06348 251 YIIETAKIINEG---------------------ICFSAPTISQRAAIYALKHRDTI-VPLIKEEFQKRLEYAYKRIESIP 308 (384)
T ss_pred HHHHHHHHHHHh---------------------ccCCCCHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 876665533211 01123333444444455432221 45677788888899999998877
Q ss_pred CEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
++++..+. .+.++|++++ +.+..++.+.+.+++||.+.+|..+.. ..++++|++++ .+.+++++
T Consensus 309 ~~~~~~p~------gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~------~~~~~iRi~~~--~~~~~l~~ 374 (384)
T PRK06348 309 NLSLHPPK------GSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGE------SGEGYIRLACT--VGIEVLEE 374 (384)
T ss_pred CceeccCC------eeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhcc------CCCCeEEEEec--CCHHHHHH
Confidence 77665443 1447888886 457788888876555999999875522 12579999997 58889999
Q ss_pred HHHHHHHH
Q 012718 443 FIHALNET 450 (458)
Q Consensus 443 l~~~l~~~ 450 (458)
.+++|.++
T Consensus 375 al~~l~~~ 382 (384)
T PRK06348 375 AFNRIEKM 382 (384)
T ss_pred HHHHHHhh
Confidence 99888754
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=254.25 Aligned_cols=335 Identities=14% Similarity=0.192 Sum_probs=240.3
Q ss_pred CCCeEEecCCCCC-----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEE
Q 012718 65 SKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIV 133 (458)
Q Consensus 65 ~~~~i~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~ 133 (458)
+++++.|..|.+. ++|+.+.+++.+.+.....+ ++......+++|++++++++ +++ ++|+
T Consensus 30 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~--------~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~ 100 (409)
T PLN02656 30 GKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFN--------GYAPTVGLPQARRAIAEYLSRDLPYKLSL-DDVF 100 (409)
T ss_pred CCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCC--------CCCCCCCCHHHHHHHHHHHHHhcCCCCCc-ccEE
Confidence 5789999988875 67889999988877642111 01112334578888888874 334 3999
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceE
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKL 211 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~ 211 (458)
+|+|+++|+.+++.++ +++||+|++++|+|+. +...++..|++++.+++++ ++.+|++.+++.+++++++
T Consensus 101 ~t~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~ 172 (409)
T PLN02656 101 ITSGCTQAIDVALSML----ARPGANILLPRPGFPI----YELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVA 172 (409)
T ss_pred EeCChHHHHHHHHHHH----hCCCCeEEEeCCCCCc----HHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceE
Confidence 9999999999999987 6899999999999983 3455566799999999863 3578999999999889999
Q ss_pred EEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc------ccC-CCCCCCCcEEEecccCCCCCCc--eeE
Q 012718 212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQGLDADFLVASSHKMCGPTG--IGF 279 (458)
Q Consensus 212 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~------~~~-~~~~~~~d~~~~s~~K~~gp~g--~G~ 279 (458)
+++++|+||||.+++ +++|+++|+++|++||+|++|..-. .++ .+......+++.|+||.|+.+| +||
T Consensus 173 v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~ 252 (409)
T PLN02656 173 LVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGW 252 (409)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEE
Confidence 999999999999987 7788999999999999999998321 111 1222345788899999888888 999
Q ss_pred EEEec--------cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 012718 280 LFGKS--------DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEME 351 (458)
Q Consensus 280 l~~~~--------~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~ 351 (458)
+++++ ++++.+..... . .+.++...+.++..+++...+.-+++.++++++
T Consensus 253 ~i~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 310 (409)
T PLN02656 253 FVTTDPSGSFRDPKIVERIKKYFD---------------------I-LGGPATFIQAAVPTILEQTDESFFKKTINILKQ 310 (409)
T ss_pred EEEeCcccccccHHHHHHHHHHHh---------------------h-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99852 44444432211 0 122344444555555542111126677788888
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----C-ChHHHH-HHHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----I-HPTDIA-TLLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 352 l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~-~~~~~~-~~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
.++.+.+.|+.+++.....++. .+.++|++++. . +..++. +.+.++ ||.+.||..+ |.+
T Consensus 311 ~r~~~~~~L~~~~~~~~~~~p~-----gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~-gV~v~pg~~f--------g~~ 376 (409)
T PLN02656 311 SSDICCDRIKEIPCITCPHKPE-----GSMAVMVKLNLSLLEDISDDIDFCFKLAREE-SVIILPGTAV--------GLK 376 (409)
T ss_pred HHHHHHHHHhhCCCCcCCcCCC-----eEEEEEEecchhhcCCCCCHHHHHHHHHHhC-CEEEecchhc--------CCC
Confidence 8999999998875543222222 15688888752 1 233444 555666 9999999744 346
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 425 ASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+++||+++ .+++++++.+++|++++++.
T Consensus 377 ~~iRi~~~--~~~e~l~eal~rl~~~~~~~ 404 (409)
T PLN02656 377 NWLRITFA--ADPSSLEEALGRIKSFYLRH 404 (409)
T ss_pred CeEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 89999999 47899999999999988754
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=251.91 Aligned_cols=335 Identities=14% Similarity=0.120 Sum_probs=237.2
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~g 137 (458)
++++++|+.+... ++++.+.+++.+.+... . .. +......+++|+.+|+++ |. +++ +|++|+|
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~----Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~t~G 98 (388)
T PRK07337 29 GRDIIHMGIGEPDFTAPEPVVEAAARALRRG---V--TQ----YTSALGLAPLREAIAAWYARRFGLDVAPE-RIVVTAG 98 (388)
T ss_pred CCCEEEeCCcCCCCCCCHHHHHHHHHHHhcC---C--CC----CCCCCCCHHHHHHHHHHHHHHhCCCCChH-hEEEecC
Confidence 3678999999877 46778888888876531 0 00 111233557888888876 43 444 8999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++|+.+++.++ +++||+|++++|+|++. ...++..|++++.++++. ++.+|++++++.+.+++++|+++
T Consensus 99 ~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~ 170 (388)
T PRK07337 99 ASAALLLACLAL----VERGDEVLMPDPSYPCN----RHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLA 170 (388)
T ss_pred cHHHHHHHHHHh----cCCCCEEEEeCCCchhh----HHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEE
Confidence 999999999987 68999999999999965 444556799999999874 35789999999998899999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCCCCCc-EEEecccCCCCCCc--eeEEEEeccc
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQGLDAD-FLVASSHKMCGPTG--IGFLFGKSDL 286 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~~~~d-~~~~s~~K~~gp~g--~G~l~~~~~~ 286 (458)
+++||||.+++ +++|+++|+++|+++|+|++|..-.. +......+.+ +++.|+||.+|.+| +||+++++++
T Consensus 171 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l 250 (388)
T PRK07337 171 SPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEAL 250 (388)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHH
Confidence 99999999998 67888899999999999999872211 1122222333 56779999998777 9999999887
Q ss_pred cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Q 012718 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~ 366 (458)
++.+......+. . +.+.....++..+++.-....+.+.++.+++.++++.+.|+++ ++
T Consensus 251 ~~~l~~~~~~~~--------------------~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~ 308 (388)
T PRK07337 251 VGTFEKLAQNLF--------------------I-CASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL-GF 308 (388)
T ss_pred HHHHHHHHHHhc--------------------c-CCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 766654332111 1 2233233333333321000114566778888889999999886 65
Q ss_pred EEeCCCCCCcCccccEEEEEeCC------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 367 RIYGPKPSEHVQRAALCSFNVEN------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
.+...+. .+.++|++++. .+..++.+.+.+++||.+.+|..+... +..+++|++++. +.+++
T Consensus 309 ~~~~~p~-----~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~-----~~~~~~Ri~~~~--~~~~l 376 (388)
T PRK07337 309 KVPVMPD-----GAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPH-----APRDYIRLSYAT--SMSRL 376 (388)
T ss_pred ccccCCC-----eeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCC-----CCCCEEEEEecC--CHHHH
Confidence 4321221 26689999874 356788877654449999998755321 125799999994 68889
Q ss_pred HHHHHHHHHHH
Q 012718 441 DEFIHALNETV 451 (458)
Q Consensus 441 ~~l~~~l~~~~ 451 (458)
.+.+++|.+++
T Consensus 377 ~~~l~rl~~~l 387 (388)
T PRK07337 377 EEAVARLGKLF 387 (388)
T ss_pred HHHHHHHHHHh
Confidence 98888887754
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-30 Score=251.83 Aligned_cols=340 Identities=14% Similarity=0.123 Sum_probs=238.3
Q ss_pred CCCeEEecCCCCC-----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEE
Q 012718 65 SKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIV 133 (458)
Q Consensus 65 ~~~~i~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~ 133 (458)
+++.+.|..|... ++|+.+.+++.+.+.....+. +.......++|++++++++ .++ ++|+
T Consensus 31 ~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~--------Y~~~~G~~~lr~aia~~~~~~~g~~~~~-~~I~ 101 (409)
T PLN00143 31 HRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNS--------YAPTGGILPARRAIADYLSNDLPYQLSP-DDVY 101 (409)
T ss_pred CCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCC--------CCCCCCCHHHHHHHHHHHHhhcCCCCCH-hhEE
Confidence 4789999988774 788888899888776421110 1112234468888888873 344 4999
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceE
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKL 211 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~ 211 (458)
+|+|+++++.+++.++ +++||.|+++.|+|+. +...++..|++++.+++++ ++.+|++++++++++++++
T Consensus 102 it~G~~~al~~~~~~l----~~~gd~v~v~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 173 (409)
T PLN00143 102 LTLGCKHAAEIIIKVL----ARPEANILLPRPGFPD----VETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIA 173 (409)
T ss_pred EecChHHHHHHHHHHH----cCCCCEEEEcCCCCcC----HHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEE
Confidence 9999999999999988 6899999999999984 4566777899999999852 3568999999999888999
Q ss_pred EEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc------ccC-CCCCCCCcEEEecccCCCCCCc--eeE
Q 012718 212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQGLDADFLVASSHKMCGPTG--IGF 279 (458)
Q Consensus 212 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~------~~~-~~~~~~~d~~~~s~~K~~gp~g--~G~ 279 (458)
+++++|+||||.+++ +++|+++|++++++||+|++|..-. .++ .+......+++.|+||.|+.+| +||
T Consensus 174 ~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~ 253 (409)
T PLN00143 174 MVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGW 253 (409)
T ss_pred EEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEE
Confidence 999999999999999 6788899999999999999997321 111 1222235688899999988888 999
Q ss_pred EEEe-c-cccccC---CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 012718 280 LFGK-S-DLLSAM---PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAK 354 (458)
Q Consensus 280 l~~~-~-~~~~~l---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~ 354 (458)
++++ + .+++.+ ..+..- ...... ++.....++..+++.....-+++..+++++..+
T Consensus 254 ~v~~~p~~~~~~~~~~~~~~~~------------------~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 314 (409)
T PLN00143 254 LVTCDPSGLLQICEIADSIKKA------------------LNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALA 314 (409)
T ss_pred EEeeCchhhhhhHHHHHHHHHH------------------HhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 9984 3 232211 100000 000011 122333444444431101125666777778888
Q ss_pred HHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----C-ChHHHHHHH-hhhcCeEeccCCCCChhhHhhcCCCCeE
Q 012718 355 YLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----I-HPTDIATLL-DQQYGVATRSGHHCAQPLHRYLGVNASA 427 (458)
Q Consensus 355 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~-~~~~~~~~l-~~~~gi~~~~g~~~~~~~~~~~g~~~~l 427 (458)
++.+.|.++++..+...+. .+.++|++++. . +..++...+ .++ ||.+.+|..+ |.++++
T Consensus 315 ~~~~~L~~~~~~~~~~~p~-----gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~-gV~v~pg~~f--------~~~~~i 380 (409)
T PLN00143 315 FCYDKLKEIPCIMCPQKAE-----GAFFALVKLNLLLLEDIEDDMEFCLKLAKEE-SLIILPGVTV--------GLKNWL 380 (409)
T ss_pred HHHHHHhcCCCCCCCCCCC-----eeEEEEEecchhhcCCCCCHHHHHHHHHHhC-CEEEeCcccc--------CCCCeE
Confidence 8888888774432222221 26689999863 2 455666555 555 9999999743 447899
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 428 RASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 428 Ris~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
||+++ .+.+++++.+++|.+++++..+
T Consensus 381 Ri~~~--~~~~~l~~al~rl~~~l~~~~~ 407 (409)
T PLN00143 381 RITFA--VEQSSLEDGLGRLKSFCGRHAK 407 (409)
T ss_pred EEEEc--CCHHHHHHHHHHHHHHHHHhcc
Confidence 99999 5789999999999999976544
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=248.53 Aligned_cols=329 Identities=21% Similarity=0.259 Sum_probs=240.2
Q ss_pred eEEecC-CCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 68 LVYLDN-AATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 68 ~i~l~~-~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
+.||.. .+.| +.++.+.+++.++++++..+. +.+..........+++++.+++++|++ ..++++++++++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~~---~~iv~~sg~~a~~~~ 77 (349)
T cd06454 3 VLNFCSNDYLGLANHPEVIEAAKEALDKYGVGA--GGSRLISGTSDLHEELEEELAEFHGKE---AALVFSSGYAANDGV 77 (349)
T ss_pred ceecccCCccccCCCHHHHHHHHHHHHHhCCCC--CCcCeecCCchHHHHHHHHHHHHhCCC---CEEEeccHHHHHHHH
Confidence 345543 3445 336889999999998643221 111111234667778999999999985 456666778888888
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-----CceEEEEecccCc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-----KTKLVVIHHISNM 220 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-----~~~~v~~~~~~n~ 220 (458)
+.++ +++||.|+++++.|.+.. ..++..|++++.++. +|.+++++.+++ +++++++++++|+
T Consensus 78 ~~~~----~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~ 144 (349)
T cd06454 78 LSTL----AGKGDLIISDSLNHASII----DGIRLSGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSM 144 (349)
T ss_pred HHHh----cCCCCEEEEehhhhHHHH----HHHHHcCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccC
Confidence 7776 589999999999998654 334566999888763 377788888764 5689999999999
Q ss_pred CcccccHHHHHHHHHhcCcEEEEeccccCCccc--------CCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCC
Q 012718 221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHMV--------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP 292 (458)
Q Consensus 221 tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~--------~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~ 292 (458)
||...|+++|.++|+++|+++|+|++|+.|..+ ++....+.|++++|+||++++.| |+++.+++.++.+..
T Consensus 145 tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-G~i~~~~~~~~~~~~ 223 (349)
T cd06454 145 DGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG-GYIAGSKELIDYLRS 223 (349)
T ss_pred CCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC-CEEECCHHHHHHHHH
Confidence 999999999999999999999999999876542 22334568999999999888866 888888776555432
Q ss_pred ccccCcceEeeecCCCCCCCCCCcc-CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
... .+ ..++.+...++++.++++.+.+ .+.+.+++.++++++.+.|.++ ++.+..+
T Consensus 224 ~~~--------------------~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~ 280 (349)
T cd06454 224 YAR--------------------GFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL-GFPVGGS 280 (349)
T ss_pred hch--------------------hhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCcccCC
Confidence 211 01 1245667777788888887765 4677899999999999999887 6665544
Q ss_pred CCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
.. +.+.++.++ +.+..++.+.|.++ ||.++++.+.... ...+++|++++.+++.+|+++++++|+++
T Consensus 281 ~~------~~~~~~~~~~~~~~~~~~~~L~~~-gI~~~~~~~~~~~-----~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 281 PS------HIIPPLIGDDPAKAVAFSDALLER-GIYVQAIRYPTVP-----RGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CC------CcEEEEeCCChHHHHHHHHHHHhC-CceEEEecCCccC-----CCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 21 334555444 34567899999988 9999865321110 01478999999999999999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-30 Score=246.33 Aligned_cols=324 Identities=17% Similarity=0.211 Sum_probs=231.4
Q ss_pred EEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCChhHH
Q 012718 69 VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKNATEA 141 (458)
Q Consensus 69 i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~~~v~~t~g~t~a 141 (458)
+.|..+... ++++.+.+++.+.......++. .....++|+++++++ |.+ ++.+|++|+|++++
T Consensus 3 ~~~~~g~p~~~~~~~~~~~~~~~~~~~~~Y~~----------~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~a 72 (350)
T TIGR03537 3 FDFGTGDPKEPTPPFIRKALIDAVPEVSQYPS----------ALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEA 72 (350)
T ss_pred EeccCCCCCCCCCHHHHHHHHHHHhccCCCCC----------CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence 445555444 3477788888776543221211 122346777777775 643 32389999999999
Q ss_pred HHHHHHHcCCCCCCCC---CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-C-CCCCHHHHHHhhcCCceEEEEec
Q 012718 142 INLVAYSWGLSNLKSG---DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-D-ESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g---~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~-~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
+..++.++ +++| |.|+++.|+|+. +...++..|++++.+++++ + ..+|++++++++.++++++++++
T Consensus 73 i~~~~~~~----~~~g~~~d~Vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~ 144 (350)
T TIGR03537 73 IFHFPLVF----IDPEEDRRRVIFGTPGYPV----YERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINY 144 (350)
T ss_pred HHHHHHHH----cCCCCCCceEEEcCCCCcc----hHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeC
Confidence 99999887 5565 799999999994 4666677899999999874 3 45799999999988999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCC---cccCCCC--CCCCcEEEecccCCCCCCc--eeEEEEeccc
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVP---HMVVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKSDL 286 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g---~~~~~~~--~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~ 286 (458)
++||||.++| +++|+++|+++|+++|+|++|+.. ..+..+. +.+..+++.|+||.+|.+| +||++.++++
T Consensus 145 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~ 224 (350)
T TIGR03537 145 PHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKL 224 (350)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCHHH
Confidence 9999999999 889999999999999999999732 2111221 1235688889999998777 9999988877
Q ss_pred cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Q 012718 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~ 366 (458)
++.+...... +..++++..+ .++..++.. ...+++.+++++++.+.+.+.|++. ++
T Consensus 225 ~~~~~~~~~~--------------------~~~~~~~~~q-~~~~~~l~~--~~~~~~~r~~l~~~~~~~~~~l~~~-g~ 280 (350)
T TIGR03537 225 ISFLRKLRAN--------------------FGVASPDFVQ-AAAKAAWSD--DNHVLERRKIFKRKRDLFIEFFNKV-GL 280 (350)
T ss_pred HHHHHHHHHh--------------------hccCCCHHHH-HHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 7666543221 1122333222 222233321 1124667788888899999999887 77
Q ss_pred EEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 367 RIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
++..+. .+.++|+++++ .+..++++.|.++ ||.+.+|..+.. +.++++|+++. .+.++++++++
T Consensus 281 ~~~~~~------g~~~~~~~~~~~~~~~~l~~~L~~~-gv~v~~g~~f~~------~~~~~~Ri~~~--~~~~~~~~~l~ 345 (350)
T TIGR03537 281 EYLYPD------ATFYLWVKVPSGIDAKDYALRLLEN-GIVVAPGENFGS------GEEGYVRVALV--PTLEECEEALR 345 (350)
T ss_pred cccCCC------eEEEEEEECCCCCCHHHHHHHHHHC-CEEEcCchhhCC------CCCCEEEEEec--CCHHHHHHHHH
Confidence 655443 14478898875 4678899999987 999999875422 12578999986 57899999888
Q ss_pred HHHH
Q 012718 446 ALNE 449 (458)
Q Consensus 446 ~l~~ 449 (458)
++.+
T Consensus 346 ~~~~ 349 (350)
T TIGR03537 346 LWER 349 (350)
T ss_pred HHhc
Confidence 8764
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-30 Score=250.84 Aligned_cols=332 Identities=15% Similarity=0.175 Sum_probs=234.9
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~g 137 (458)
+++.+.|+.+... +.++.+.+++.+.+.....+ .+.......++|+++++++ | ++++++|++|+|
T Consensus 31 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~--------~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G 102 (389)
T PRK08068 31 GHDVINLGQGNPDQPTPEHIVEALQEAAENPANH--------KYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFG 102 (389)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCC--------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence 3567889888665 34567788887766531100 0111233457888888887 5 333337999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++++..++.++ +++||.|++++|+|.. +...++..|++++.++++++ ..+|++++++.+.+++++|+++
T Consensus 103 ~~~~l~~~~~~~----~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~ 174 (389)
T PRK08068 103 GKAGLVELPQCL----MNPGDTILVPDPGYPD----YLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLN 174 (389)
T ss_pred cHHHHHHHHHHh----CCCCCEEEEcCCCCcc----hHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEE
Confidence 999999998887 6899999999999984 45556778999999999753 4678999999988889999999
Q ss_pred cccCcCcccccH---HHHHHHHHhcCcEEEEeccccC----CcccCCC---C-CCCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILPI---EEIVHWSHDVGAKVLVDACQSV----PHMVVDV---Q-GLDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~l---~~i~~l~~~~~~~vivD~a~~~----g~~~~~~---~-~~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+|+||||.+++. ++|+++|++++++||+|++|.. +..+..+ . ..+..+++.|+||.||.+| +||++.
T Consensus 175 ~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~ 254 (389)
T PRK08068 175 YPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVG 254 (389)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEec
Confidence 999999999994 6788899999999999999962 1111121 1 1235688999999998888 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+...... +..++++..+.++. .++..-. ..+++.++++++.++++.+.|++
T Consensus 255 ~~~l~~~l~~~~~~--------------------~~~~~~~~~q~~~~-~~l~~~~-~~~~~~~~~~~~~r~~~~~~L~~ 312 (389)
T PRK08068 255 NESVIEAINLLQDH--------------------LFVSLFGAIQDAAI-EALLSDQ-SCVAELVARYESRRNAFISACRE 312 (389)
T ss_pred CHHHHHHHHHHHhh--------------------ccCCCChHHHHHHH-HHHhCcH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887776533221 11233333333333 2222111 12567788888999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
+ ++.+..+. .+.++|+++++ .+..++.+.+.+++||.+.+|..+.. ..++++||+++ .+.+.+.
T Consensus 313 ~-g~~~~~~~------g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~~iRi~~~--~~~~~l~ 377 (389)
T PRK08068 313 I-GWEVDAPK------GSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGE------HGEGYVRVGLL--TDEERLR 377 (389)
T ss_pred C-CCcccCCC------eeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCc------cCCCeEEEEEc--CCHHHHH
Confidence 7 76655433 14468999874 56788999988645999999874421 11579999998 4566666
Q ss_pred HHHHHHHH
Q 012718 442 EFIHALNE 449 (458)
Q Consensus 442 ~l~~~l~~ 449 (458)
..+++|.+
T Consensus 378 ~al~~l~~ 385 (389)
T PRK08068 378 EAVERIGK 385 (389)
T ss_pred HHHHHHHH
Confidence 66666553
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=248.44 Aligned_cols=339 Identities=19% Similarity=0.228 Sum_probs=242.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-----CCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-----NASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----g~~~~~~v~~t~g~t 139 (458)
.++++|+.+... ++|+.+.+++.+.......+ ......+++|+++++++ +++++ +|++|+|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y----------~~~~g~~~lr~~ia~~~~~~~~~~~~~-~i~~t~G~~ 98 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAIKNYDEEVLAY----------SHSQGIPELREAFAKYYKKWGIDVEPD-EILITNGGS 98 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHhcCCcCc----------CCCCCCHHHHHHHHHHHHHhCCCCCcc-eEEEcCChH
Confidence 568999999876 57888888877654321111 11334567888888887 35554 999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CC-C-CCHHHHHHhhcCCceEEEEec
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DE-S-PDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~-~-~d~~~l~~~l~~~~~~v~~~~ 216 (458)
+|+.+++.++ +++||+|++++|.|.. +..+++..|++++.++.+. ++ . .+++.+++.+++++++|++++
T Consensus 99 ~al~~~~~~l----~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~ 170 (397)
T PRK07568 99 EAILFAMMAI----CDPGDEILVPEPFYAN----YNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISN 170 (397)
T ss_pred HHHHHHHHHh----cCCCCEEEEecCCCcc----HHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEEC
Confidence 9999999887 6899999999998873 3445667799999999863 33 2 357899999988999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----cc---CCCCC-CCCcEEEecccCCCCCCc--eeEEEEe
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MV---VDVQG-LDADFLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~---~~~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
|+||||.+++ +++|+++|+++|+++|+|++|..-. .. ..+.. .+..+++.|+||.+|++| +||++++
T Consensus 171 p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~ 250 (397)
T PRK07568 171 PGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISK 250 (397)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecC
Confidence 9999999997 6789999999999999999987221 11 12222 234588889999888767 9999985
Q ss_pred -ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 284 -SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 284 -~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
+++++.+...... .. +.+.....++..+++... ..++++++.+++.++.+.+.|++
T Consensus 251 ~~~~~~~~~~~~~~---------------------~~-~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~ 307 (397)
T PRK07568 251 NKELIAAAMKLCQA---------------------RL-SPPTLEQIGAAALLDTPE-SYFDEVREEYKKRRDILYEELNK 307 (397)
T ss_pred CHHHHHHHHHHhhc---------------------cC-CCCcHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555443211110 01 223333444444554221 22567788888999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhh-----cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQ-----YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-----~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~ 437 (458)
++++.+..+. .+.++|++++..+..++.+.+.++ .||.+.+|..+.... -..++++|++++ .+.
T Consensus 308 ~~~~~~~~p~------g~~~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~---~~~~~~iRls~~--~~~ 376 (397)
T PRK07568 308 IPGVVCEKPK------GAFYIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATP---GLGKNEIRIAYV--LNE 376 (397)
T ss_pred CCCceecCCC------cceEEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCC---CCCCCeEEEEEe--CCH
Confidence 8777665443 144788898765677888887652 389999987442100 001469999998 467
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 012718 438 EDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 438 ~di~~l~~~l~~~~~~~~~~ 457 (458)
+++++++++|.+++++..++
T Consensus 377 ~~~~~~~~~l~~~l~~~~~~ 396 (397)
T PRK07568 377 EDLKRAMEILKEALEKYNKR 396 (397)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999877654
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.6e-30 Score=244.86 Aligned_cols=318 Identities=17% Similarity=0.181 Sum_probs=234.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
++.+.|+.+.+. .+|+.+.+++.+.+.....++. .....++|+++++++|++++ +|++|+|+++++.+
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----------~~g~~~lr~aia~~~~~~~~-~I~it~Ga~~al~~ 90 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAARLGDLAAYPS----------TEDERRARAAVAARHGRTPD-EVLLLAGAAEGFAL 90 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHhhHhhcCCC----------ccchHHHHHHHHHHhCcChh-hEEECCCHHHHHHH
Confidence 678999988775 5788889999887754322221 23456899999999999875 99999999999998
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++. + +++ .+++..|+|.. +...++..|.+++.+++++++.+|++.+ +++++++++++++||||.+
T Consensus 91 ~~~-l-----~~~-~viv~~P~y~~----~~~~~~~~G~~i~~v~~~~~~~~d~~~l----~~~~~~i~l~np~NPTG~~ 155 (349)
T PRK07908 91 LAR-L-----RPR-RAAVVHPSFTE----PEAALRAAGIPVHRVVLDPPFRLDPAAV----PDDADLVVIGNPTNPTSVL 155 (349)
T ss_pred HHh-c-----CCC-eEEEeCCCChH----HHHHHHHcCCEEEeeccCcccCcChhHh----ccCCCEEEEcCCCCCCCCC
Confidence 887 4 354 56678888873 3556677899999999987677788754 4678899999999999999
Q ss_pred ccHHHHHHHHHhcCcEEEEeccccC--CcccCCCC--CCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCc
Q 012718 225 LPIEEIVHWSHDVGAKVLVDACQSV--PHMVVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGE 298 (458)
Q Consensus 225 ~~l~~i~~l~~~~~~~vivD~a~~~--g~~~~~~~--~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~ 298 (458)
+|.++|.++|++ +.++|+|++|+. ...+..+. +.+..+++.|+||.+|++| +||+++++++++.+......+
T Consensus 156 ~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~~- 233 (349)
T PRK07908 156 HPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAHW- 233 (349)
T ss_pred cCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCCCC-
Confidence 999999999975 778889999862 11122222 2234577779999998777 799999988877765432211
Q ss_pred ceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCc
Q 012718 299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQ 378 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~ 378 (458)
+.+.....++...++......+++++++++++++++.+.|+++ ++++..+..
T Consensus 234 ----------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~----- 285 (349)
T PRK07908 234 ----------------------PVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GARVVDPAA----- 285 (349)
T ss_pred ----------------------CccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcEeccCCC-----
Confidence 1222233333333321111125677888899999999999888 787765432
Q ss_pred cccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 379 RAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 379 ~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++++|+++++ ..++.+.|.++ ||.+++|..+... .++++|||++ +.+|+++++++|++++.
T Consensus 286 -g~~~~~~~~~--~~~~~~~l~~~-gI~v~~g~~f~~~------~~~~vRis~~---~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 286 -APFVLVRVPD--AELLRKRLRER-GIAVRRGDTFPGL------DPDYLRLAVR---PRAEVPVLVQALAEILK 346 (349)
T ss_pred -ceEEEEECCc--HHHHHHHHHhC-CEEEEECCCCCCC------CCCeEEEEeC---CCccHHHHHHHHHHHHh
Confidence 7799999885 56788888877 9999998754210 2679999997 67899999999998764
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-30 Score=250.13 Aligned_cols=333 Identities=15% Similarity=0.171 Sum_probs=236.7
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
+.+.+.|..+... ++++.+.+++.+.+... .. ..+ .......++|++++++++ .++ ++|++|+|
T Consensus 28 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~Y----~~~~G~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G 98 (386)
T PRK07550 28 DGPLIDLSQAVPGYPPPPELLRALAEAAADP--AA--HLY----GPVEGLPELREAYAAHYSRLYGAAISP-EQVHITSG 98 (386)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCc--CC--cCC----CCCCCCHHHHHHHHHHHHHHhCCCCCc-ceEEEecC
Confidence 3567888888765 45677777777665321 10 111 112234466666666664 333 49999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++|+.+++.++ +++||+|++++|+|... ...++..|++++.++.++ ++.+|++++++.++++++++++.
T Consensus 99 ~~~al~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 170 (386)
T PRK07550 99 CNQAFWAAMVTL----AGAGDEVILPLPWYFNH----KMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALV 170 (386)
T ss_pred cHHHHHHHHHHh----cCCCCEEEEcCCCCcch----HHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEe
Confidence 999999999988 68999999999999854 445567799999999974 35579999999998889999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCC---CC-CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDV---QG-LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~---~~-~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+|+||||.++| +++|+++|+++|++||+|++|+... .+..+ .. ....+++.|+||.+|.+| +||+++
T Consensus 171 ~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~ 250 (386)
T PRK07550 171 TPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVA 250 (386)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeec
Confidence 99999999998 7789999999999999999987221 11111 11 124677889999888556 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+....... ..+++.....++..+++.+.+. .++.++++++.++++.+.|.+
T Consensus 251 ~~~~~~~~~~~~~~~---------------------~~~~s~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~L~~ 308 (386)
T PRK07550 251 SPARIAEIEKFMDTV---------------------AICAPRIGQIAVAWGLPNLADW-RAGNRAEIARRRDAFRAVFAR 308 (386)
T ss_pred CHHHHHHHHHHHhhc---------------------ccCCCcHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 887766655332211 1123333444444555443332 456677888889999999987
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
++++.+. +. .+.++|++++ +.+..++++.|.+++||.+.+|..+.. ..++++||+++. .+.+++
T Consensus 309 ~~~~~~~-~~------g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~------~~~~~iRis~~~-~~~~~~ 374 (386)
T PRK07550 309 LPGWELL-AS------GAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGP------GQEGYLRLAFAN-ADVAGI 374 (386)
T ss_pred CCCceeC-CC------ceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCC------CCCCEEEEEeec-CCHHHH
Confidence 7566543 22 1568888886 467888999876545999999875421 125799999985 578999
Q ss_pred HHHHHHHHHH
Q 012718 441 DEFIHALNET 450 (458)
Q Consensus 441 ~~l~~~l~~~ 450 (458)
++++++|.++
T Consensus 375 ~~~~~~l~~~ 384 (386)
T PRK07550 375 GELVERLRAF 384 (386)
T ss_pred HHHHHHHHhh
Confidence 9999998765
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=9e-30 Score=252.73 Aligned_cols=322 Identities=19% Similarity=0.220 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEE
Q 012718 108 KATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF 187 (458)
Q Consensus 108 ~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~ 187 (458)
+..+.+.+.++.+++++|++.. ++++|+|+|+++..++.++ ..++|++|+++++.|++....+..+++..|++++.
T Consensus 109 g~~~~~~e~~~~la~l~g~~~~-~v~~~~g~t~~~~~~~~a~---~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~ 184 (447)
T PRK00451 109 GTLQAIFEYQTMICELTGMDVA-NASMYDGATALAEAALMAV---RITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVE 184 (447)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc-eEEecCcHHHHHHHHHHHH---HhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEE
Confidence 3566677788899999999876 8999999999999988876 24689999999999998887877777888999999
Q ss_pred EeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEE--eccccCCcccCCCCCCCCcEEE
Q 012718 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV--DACQSVPHMVVDVQGLDADFLV 265 (458)
Q Consensus 188 v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~viv--D~a~~~g~~~~~~~~~~~d~~~ 265 (458)
++.+++ .+|++++++.+++++++|+++++ |+||.+.|+++|.++||++|+++++ |.. +.|... ...++++|+++
T Consensus 185 v~~~~~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~-~~~~~~~D~~~ 260 (447)
T PRK00451 185 VPYEDG-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLK-PPGEYGADIVV 260 (447)
T ss_pred ecCCCC-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCC-CcccCCCCEEE
Confidence 999877 88999999999999999999998 8999999999999999999999998 544 455443 23577899999
Q ss_pred ecccCC-----CCCCceeEEEEeccccccCCCccccCcceEeeecCC---CCCCCCCCccCCCCCCHH-----HHHHHHH
Q 012718 266 ASSHKM-----CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH---STFADPPSRFEAGTPAIG-----EAIGLGA 332 (458)
Q Consensus 266 ~s~~K~-----~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~gt~~~~-----~~~~l~~ 332 (458)
+|.+|+ +|+.|+|++++++++++.+++...|+.......... ........+++.++.+.. +..+...
T Consensus 261 ~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~ 340 (447)
T PRK00451 261 GEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAI 340 (447)
T ss_pred ECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHH
Confidence 988875 555579999999999888877766664322110000 011111234444554442 2233334
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEec-cCC
Q 012718 333 AIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATR-SGH 411 (458)
Q Consensus 333 al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~-~g~ 411 (458)
+++.+.+.|++++.+++.++++++.+.|++++++++. ... ...+++++++ .+..++.++|.++ ||... ++.
T Consensus 341 ~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~-----~~~~~~v~~~-~~~~~~~~~L~~~-gi~~~~~~~ 412 (447)
T PRK00451 341 YMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELF-DGP-----FFNEFVVRLP-KPAEEVNEALLEK-GILGGYDLG 412 (447)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec-CCC-----eEEEEEEecC-CCHHHHHHHHHhc-CCCCCcccc
Confidence 5666667789999999999999999999999888875 221 1223445553 3568899999988 87642 222
Q ss_pred CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 412 ~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
...+ +..+.+|+|++.++|++|++++++.|++++
T Consensus 413 ~~~~------~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 413 RYYP------ELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred cccC------CcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 1111 124689999999999999999999998764
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-30 Score=250.76 Aligned_cols=336 Identities=16% Similarity=0.162 Sum_probs=237.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~g~ 138 (458)
.+.+.|..+... +.|+.+.+++.+.+... . . ++.......++|+++++++ |. +++.+|++|+|+
T Consensus 26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~---~--~----~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~ 96 (387)
T PRK08912 26 HGAINLGQGFPDDPGPEDVRRAAADALLDG---S--N----QYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGA 96 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcC---C--C----CCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCc
Confidence 356778777554 34666777776654321 0 0 0111233346677777665 43 332389999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
++++..++.++ +++||.|+++.|+|+. +...++..|++++.+++++ ++.+|++.+++.+.+++++++++++
T Consensus 97 ~~al~~~~~~~----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 168 (387)
T PRK08912 97 TEALAAALLAL----VEPGDEVVLFQPLYDA----YLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNP 168 (387)
T ss_pred HHHHHHHHHHh----cCCCCEEEEeCCCchh----hHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCC
Confidence 99999999887 6899999999999984 4666778899999999874 5778999999999888999999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc------ccC-CCCC-CCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQG-LDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~------~~~-~~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
+||||.+++ +++|.++|+++++++|+|++|+... .++ .+.. .+.+++++|+||.+|.+| +||+++++
T Consensus 169 ~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~ 248 (387)
T PRK08912 169 LNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAP 248 (387)
T ss_pred CCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCH
Confidence 999999998 6678999999999999999986211 111 1222 246899999999999888 99999998
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
++++.+...... ...++++.. ..++..++....+ -+++.++++++.++++.+.|++.
T Consensus 249 ~~~~~l~~~~~~--------------------~~~~~~~~~-q~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~- 305 (387)
T PRK08912 249 PLLRVLAKAHQF--------------------LTFTTPPNL-QAAVAYGLGKPDD-YFEGMRADLARSRDRLAAGLRRI- 305 (387)
T ss_pred HHHHHHHHHHhh--------------------ccccCChHH-HHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHhC-
Confidence 877666432210 001122222 2333333321111 14677888899999999999887
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCC----CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVEN----IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
++++..+. .+.++|+.++. .+..++.+.+.+++||.+.+|..+... -+..+++|++++. ..+++
T Consensus 306 g~~~~~~~------g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~----~~~~~~iRl~~~~--~~~~l 373 (387)
T PRK08912 306 GFPVLPSQ------GTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEE----DPVTSVVRFCFAK--RDATL 373 (387)
T ss_pred CCcccCCC------cceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCC----CCCCCEEEEEEeC--CHHHH
Confidence 77765443 15578888863 456778888765449999998744211 0125799999994 68999
Q ss_pred HHHHHHHHHHHHh
Q 012718 441 DEFIHALNETVSF 453 (458)
Q Consensus 441 ~~l~~~l~~~~~~ 453 (458)
++.+++|.+++++
T Consensus 374 ~~~l~rl~~~l~~ 386 (387)
T PRK08912 374 DEAVERLAAARRR 386 (387)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887753
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-30 Score=248.85 Aligned_cols=336 Identities=17% Similarity=0.166 Sum_probs=238.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC----C--CCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN----A--SDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~--~~~~~v~~t~g~ 138 (458)
++.+.|..+... ..++.+.+++.+.+..... .+ .......++|++++++++ . .++++|++|+|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Y----~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~ 100 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAIDANQS-----HY----TGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGA 100 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-----CC----CCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCh
Confidence 457888887766 4567777888776653110 00 111224567777777764 3 223489999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcC---CceEEEE
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSR---KTKLVVI 214 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~---~~~~v~~ 214 (458)
++++.+++.++ +++||+|++++|+|... ...++..|++++.++.+++ +.+|++.+++.++. +++++++
T Consensus 101 ~~al~~~~~~~----~~~gd~vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l 172 (391)
T PRK07309 101 TEALSASLTAI----LEPGDKVLLPAPAYPGY----EPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVIL 172 (391)
T ss_pred HHHHHHHHHHh----cCCCCEEEEeCCCCcch----HHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEE
Confidence 99999999987 68999999999999954 5566778999999998654 46899999998864 5799999
Q ss_pred ecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCC--CCCCcEEEecccCCCCCCc--eeEEEEe
Q 012718 215 HHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 215 ~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~--~~~~d~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
++|+||||.+++ +++|+++|++||+++|+|++|..-.. ..++. ..+..+++.|+||.+|.+| +||++++
T Consensus 173 ~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~ 252 (391)
T PRK07309 173 NYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAP 252 (391)
T ss_pred ECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeC
Confidence 999999999998 77889999999999999999974221 11221 1235688999999998778 9999999
Q ss_pred ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 284 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+++++.+..... +...+++...+.++...++.... .....++++++.++++.+.|++.
T Consensus 253 ~~~~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 310 (391)
T PRK07309 253 AEFTAQLIKSHQ---------------------YLVTAATTMAQFAAVEALTNGKD-DALPMKKEYIKRRDYIIEKMTDL 310 (391)
T ss_pred HHHHHHHHHHHh---------------------hcccCCChHHHHHHHHHHhCChh-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 988776653211 11112333333444444432111 12455677788888999999887
Q ss_pred CCEEEeCCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 364 PNIRIYGPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
++++..+. .+.++|++++.. +..++.+.+.+++||.+.+|..+.. ..++++|++++ .+.+++
T Consensus 311 -~~~~~~p~------gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~------~~~~~iRi~~~--~~~~~l 375 (391)
T PRK07309 311 -GFKIIKPD------GAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGP------YGEGYVRLSYA--ASMETI 375 (391)
T ss_pred -CCeecCCC------eeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCC------CCCCEEEEEec--CCHHHH
Confidence 77766554 145778887632 4567887665444999999875421 12679999998 468999
Q ss_pred HHHHHHHHHHHHhhh
Q 012718 441 DEFIHALNETVSFFN 455 (458)
Q Consensus 441 ~~l~~~l~~~~~~~~ 455 (458)
++++++|.+++++.+
T Consensus 376 ~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 376 KEAMKRLKEYMEEHA 390 (391)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987754
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-30 Score=256.12 Aligned_cols=332 Identities=17% Similarity=0.232 Sum_probs=235.5
Q ss_pred CCCeEEecCCCCC----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc------CCCCCCcEEE
Q 012718 65 SKKLVYLDNAATS----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVF 134 (458)
Q Consensus 65 ~~~~i~l~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~v~~ 134 (458)
+.+++.|+.|... +.|+.+.+++.+.+.....+ .......++|+++++++ +++++ +|++
T Consensus 145 g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~Y----------~~~~G~~~lReaia~~~~~~~~~~~~~~-~I~i 213 (517)
T PRK13355 145 GTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEGY----------SDSKGLFSARKAIMQYAQLKGLPNVDVD-DIYT 213 (517)
T ss_pred CCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCCC----------CCCcChHHHHHHHHHHHHhcCCCCCChh-HEEE
Confidence 4688999997763 45888888888776432211 12344668899999998 55554 9999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEE
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLV 212 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v 212 (458)
|+|+++++.+++.++ +++||.|++++|+|+. +...++..|++++.++++++ +.+|++++++.+++++++|
T Consensus 214 t~G~~eal~~~~~~l----~~~Gd~Vli~~P~y~~----y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i 285 (517)
T PRK13355 214 GNGVSELINLSMSAL----LDDGDEVLIPSPDYPL----WTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAI 285 (517)
T ss_pred eCcHHHHHHHHHHHh----CCCCCEEEEcCCCCcC----HHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEE
Confidence 999999999999988 7899999999999984 45667778999999988753 6789999999999999999
Q ss_pred EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCCCCC---CcEEEecccCCCCCCc--eeEE
Q 012718 213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQGLD---ADFLVASSHKMCGPTG--IGFL 280 (458)
Q Consensus 213 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~~~---~d~~~~s~~K~~gp~g--~G~l 280 (458)
++++|+||||.+++ +++|+++|++||++||+|++|.--. ....+.... ..+++.|+||.++.+| +||+
T Consensus 286 ~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~ 365 (517)
T PRK13355 286 VIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWM 365 (517)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEE
Confidence 99999999999999 7889999999999999999987211 111211111 2344589999998888 9999
Q ss_pred EEe--ccccc----cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH---HHhCHHHHHHHHHH
Q 012718 281 FGK--SDLLS----AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL---STIGMQKIHAYEME 351 (458)
Q Consensus 281 ~~~--~~~~~----~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~---~~~g~~~~~~~~~~ 351 (458)
+++ +++++ .+... . .. ..+.+.....++..+|... ... +... .+..+
T Consensus 366 i~~~~~~~~~~~~~~l~~~-~--------------------~~-~~~~~~~~q~a~~~aL~~~~~~~~~-~~~~-~~~~~ 421 (517)
T PRK13355 366 ILSGNKRIAKDYIEGLNML-A--------------------NM-RLCSNVPAQSIVQTALGGHQSVKDY-LVPG-GRVYE 421 (517)
T ss_pred EeeCchhhHHHHHHHHHHH-h--------------------cC-cCCcChHHHHHHHHHhcCCccHHHH-HHHH-HHHHH
Confidence 965 33221 11100 0 00 0123333444444555311 111 2222 23445
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeCC-----CChHHHHH-HHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVEN-----IHPTDIAT-LLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 352 l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~-----~~~~~~~~-~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
.++++.+.|++++++++..+. ++ +++++++. .+..+++. .|.++ ||.+.+|..+.. +.+
T Consensus 422 ~r~~l~~~L~~~~g~~~~~p~-------g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~-gV~v~pg~~F~~------~~~ 487 (517)
T PRK13355 422 QRELVYNALNAIPGISAVKPK-------AAFYIFPKIDVKKFNIHDDEQFALDLLHDK-KVLIVQGTGFNW------DKP 487 (517)
T ss_pred HHHHHHHHHhcCCCcccCCCC-------eeeEEEeecCcccCCCCCHHHHHHHHHHhC-CEEEeCcchhCC------CCc
Confidence 578899999988888876554 44 56667753 13445554 45566 999999975422 236
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 425 ASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+++||++. .+.+++++.+++|.++++..+
T Consensus 488 ~~~Ris~~--~~~~~l~~a~~rl~~~~~~~~ 516 (517)
T PRK13355 488 DHFRVVYL--PRLEDLEDAMDRLADFFSYYR 516 (517)
T ss_pred CEEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 89999996 689999999999999987543
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.2e-30 Score=253.93 Aligned_cols=328 Identities=17% Similarity=0.209 Sum_probs=230.6
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCChhHHHHHHHHHcCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKNATEAINLVAYSWGL 151 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g~t~a~~~~~~~l~~ 151 (458)
..|..+++++.+++....... ..+.......++|+++|++++ +++ ++|++|+|+++++.+++.++
T Consensus 88 ~~P~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-~~I~it~Ga~~al~~~~~~l-- 158 (481)
T PTZ00377 88 LFPADVVARAKEYLNAIGGGT------GAYTDSAGYPFVRKAVAAFIERRDGVPKDP-SDIFLTDGASSGIKLLLQLL-- 158 (481)
T ss_pred cCCHHHHHHHHHHHHhCCCcc------cCcCcccCCHHHHHHHHHHHHHhcCCCCCh-hhEEEcCCHHHHHHHHHHHh--
Confidence 456677887776655432111 112234456688888888875 334 49999999999999999988
Q ss_pred CCC-CCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcC------CceEEEEecccCcCc
Q 012718 152 SNL-KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR------KTKLVVIHHISNMLA 222 (458)
Q Consensus 152 ~~~-~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG 222 (458)
+ ++||.|+++.|+|+ .+...++..|++++.++++++ +.+|++.+++.+++ +++++++++|+||||
T Consensus 159 --~~~~gD~Vlv~~P~y~----~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG 232 (481)
T PTZ00377 159 --IGDPSDGVMIPIPQYP----LYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTG 232 (481)
T ss_pred --ccCCCCEEEECCCCch----hHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCC
Confidence 5 69999999999999 446666778999999998754 57899999999864 789999999999999
Q ss_pred cccc---HHHHHHHHHhcCcEEEEeccccCCcc----cC-C-------CCCC---C-CcEEEecccC-CCCCCc--eeEE
Q 012718 223 SILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VV-D-------VQGL---D-ADFLVASSHK-MCGPTG--IGFL 280 (458)
Q Consensus 223 ~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~-~-------~~~~---~-~d~~~~s~~K-~~gp~g--~G~l 280 (458)
.+++ +++|+++|+++|++||+|++|..-.. +. . +... + ..+++.|+|| +++.+| +||+
T Consensus 233 ~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~ 312 (481)
T PTZ00377 233 QVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYF 312 (481)
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEE
Confidence 9999 78899999999999999999973111 11 1 1111 1 2467889999 578777 9999
Q ss_pred EE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH----------HHHhCHHHHHH
Q 012718 281 FG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY----------LSTIGMQKIHA 347 (458)
Q Consensus 281 ~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~----------~~~~g~~~~~~ 347 (458)
++ ++++++.+..... ... +++.....++..+++. +.. .+.++.+
T Consensus 313 ~~~~~p~~li~~l~~~~~---------------------~~~-~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~-~~~~~~~ 369 (481)
T PTZ00377 313 ELTNIPPEVREQIYKLAS---------------------INL-CSNVVGQLMTGLMCNPPREGDASYPLYKR-ERDAIFT 369 (481)
T ss_pred EEeCCCHHHHHHHHHHhh---------------------eec-CCChHHHHHHHHHhCCCCCCcccHHHHHH-HHHHHHH
Confidence 97 6676666543221 001 2344444555555531 111 1344555
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC--C-C----------ChHHHHHHHhhhcCeEeccCCCCC
Q 012718 348 YEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE--N-I----------HPTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~-~----------~~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
++++.++.+.+.|++++++++..+.. +.++|++++ . . +..+++..+.++.||.+.||+.+.
T Consensus 370 ~~~~rr~~l~~~L~~~~g~~~~~p~g------g~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~ 443 (481)
T PTZ00377 370 SLKRRAELLTDELNKIEGVSCQPVEG------AMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFG 443 (481)
T ss_pred HHHHHHHHHHHHHhcCCCcEeecCCe------eEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccC
Confidence 67888899999999888888876541 457776653 1 1 123344444434499999998553
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.. ..++++|+|++ .+.+++++++++|.++++++.+
T Consensus 444 ~~-----~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~~~~ 478 (481)
T PTZ00377 444 QK-----PGTYHFRITIL--PPEEQIEEMVKKIKEFHESFMK 478 (481)
T ss_pred CC-----CCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 21 12569999998 6789999999999999987654
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-29 Score=248.34 Aligned_cols=333 Identities=17% Similarity=0.192 Sum_probs=243.7
Q ss_pred CCCeEEecCCCCC--CCcHHHHHHHHHHHHHhccCCCC-CcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 65 SKKLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHR-GIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 65 ~~~~i~l~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
+...++|+.+..- ...+.+.+++.+.+.++..+++. +.+..+ .....++++.+|+++|.+ .+++++||++|
T Consensus 53 g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~---~~~~~~le~~la~~~g~~---~~~~~~sG~~A 126 (407)
T PRK07179 53 GPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHD---DSPKPQFEKKLAAFTGFE---SCLLCQSGWAA 126 (407)
T ss_pred CCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCC---chHHHHHHHHHHHHhCCC---cEEEECCHHHH
Confidence 4556667655322 34577899999998876444432 222211 234556779999999985 56889999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCc
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNM 220 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~ 220 (458)
+..++.++ .++|+.|++...+|.+.... ++..|++++.++. .|++++++.+++ ++++|++++++|+
T Consensus 127 n~~~l~~l----~~~g~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~lV~v~~v~n~ 193 (407)
T PRK07179 127 NVGLLQTI----ADPNTPVYIDFFAHMSLWEG----VRAAGAQAHPFRH-----NDVDHLRRQIERHGPGIIVVDSVYST 193 (407)
T ss_pred HHHHHHHh----CCCCCEEEEECCcCHHHHHH----HHHCCCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCC
Confidence 99999988 56899999999999876433 3445877766543 389999999976 5789999999999
Q ss_pred CcccccHHHHHHHHHhcCcEEEEeccccCCccc---------CCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCC
Q 012718 221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 221 tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~ 291 (458)
||.+.|+++|.++|+++|+++|+|++|+.|... +++. .++|++++|+||.+|+. +|++++++++++.+.
T Consensus 194 tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g~~-~G~l~~~~~~~~~~~ 271 (407)
T PRK07179 194 TGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFAGR-AGIITCPRELAEYVP 271 (407)
T ss_pred CCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhhcc-CeEEEeCHHHHHHHH
Confidence 999999999999999999999999999976532 1111 24699999999988864 899999887655543
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
.... .....+|.+...++++.++++.+.. .+..+++++++++++.+.|.++ ++++..
T Consensus 272 ~~~~-------------------~~~~~~t~~~~~~aa~~aal~~~~~--~~~~~~~l~~~~~~l~~~L~~~-g~~v~~- 328 (407)
T PRK07179 272 FVSY-------------------PAIFSSTLLPHEIAGLEATLEVIES--ADDRRARLHANARFLREGLSEL-GYNIRS- 328 (407)
T ss_pred HhCc-------------------CeeeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCCC-
Confidence 2110 0011356666677777778887755 3567889999999999999987 766542
Q ss_pred CCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
. ++++++.++.. +...+.+.|.++ ||.+. .+|.+.. ....+.+||+++.++|.+||++++++|+++
T Consensus 329 ~-------~~i~~l~~~~~~~~~~~~~~L~~~-GI~~~--~~~~p~~---~~~~~~lRis~~~~~t~edi~~~~~~l~~~ 395 (407)
T PRK07179 329 E-------SQIIALETGSERNTEVLRDALEER-NVFGA--VFCAPAT---PKNRNLIRLSLNADLTASDLDRVLEVCREA 395 (407)
T ss_pred C-------CCEEEEEeCCHHHHHHHHHHHHHC-CceEe--eecCCCC---CCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 1 67888877532 345677888888 99743 2222211 012578999999999999999999999999
Q ss_pred HHhh
Q 012718 451 VSFF 454 (458)
Q Consensus 451 ~~~~ 454 (458)
+++.
T Consensus 396 ~~~~ 399 (407)
T PRK07179 396 RDEV 399 (407)
T ss_pred HHhh
Confidence 8764
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-29 Score=247.96 Aligned_cols=363 Identities=17% Similarity=0.125 Sum_probs=249.2
Q ss_pred EEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH--
Q 012718 69 VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV-- 145 (458)
Q Consensus 69 i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~-- 145 (458)
.|+.-|... ..|+.+.+++.+.....+..++ .......+..+...++++.+++++|.+.. .+..++|+++.+..+
T Consensus 71 ~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpY-q~e~~sqG~lel~~~~~~~la~l~G~~~~-~l~~~~GA~a~~~~l~~ 148 (481)
T PRK04366 71 GFYPLGSCTMKYNPKINEKVARLPGFAELHPL-QPEETVQGALELMYELQEWLKEITGMDAV-TLQPAAGAHGELTGLLM 148 (481)
T ss_pred ceecCcccCCCCCHHHHHHHHhCcchhcCCCC-CChhhhhHHHHHHHHHHHHHHHHhCCCce-EEEeCcHHHHHHHHHHH
Confidence 455555333 6778888887765322222221 11123445678888999999999999732 333333433333322
Q ss_pred HHHcCCCCCCCCC----EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 146 AYSWGLSNLKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 146 ~~~l~~~~~~~g~----~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
+..+ ..++|| +|++++++|++... .++..|++++.++.+.++.+|+++|++.+++++++|++++++ +|
T Consensus 149 ~r~~---~~~~Gd~~~~~Vlv~~~~hp~~~~----~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~t 220 (481)
T PRK04366 149 IRAY---HEARGDTKRTEVIVPDSAHGTNPA----SAAMAGFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TL 220 (481)
T ss_pred HHHH---hhccCcCCCCEEEEcCCccHhHHH----HHHHcCCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-Cc
Confidence 2222 144554 99999999997643 456779999999998888999999999999999999999976 99
Q ss_pred ccc-ccHHHHHHHHHhcCcEEEEeccccCCcc-cCCCCCCCCcEEEecccCCCC-C-----CceeEEEEeccccccCCCc
Q 012718 222 ASI-LPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFLVASSHKMCG-P-----TGIGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 222 G~~-~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~~~~~~~~d~~~~s~~K~~g-p-----~g~G~l~~~~~~~~~l~~~ 293 (458)
|.+ .|+++|+++||++|+++++|+++..+.. .++..++|+|++++|+||++| | +|+|++++++++.+.+.+.
T Consensus 221 G~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~ 300 (481)
T PRK04366 221 GLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVP 300 (481)
T ss_pred cccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCC
Confidence 987 4799999999999999999999986633 246678899999999999543 4 4478999999988887754
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
..+.... ....... ......|+...|.+...+.++...+..+...|+.++.++..++++++.+.|.++ +++....+
T Consensus 301 ~v~~~g~-~~~l~~~-r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~ 376 (481)
T PRK04366 301 VVEKDGD-RYRLDYD-RPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI--YDLPYDRP 376 (481)
T ss_pred eeeccCC-ceeeccc-ccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCC
Confidence 4332111 1111111 222335676666666555666666666666677788888999999999999886 33322211
Q ss_pred CCcCccccEEE---EEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCS---FNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 374 ~~~~~~~~~v~---~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
. ....++. |..++.+..++.+.|.++ ||......+. ....+.+|+|++.++|.+|||++++.|+++
T Consensus 377 ~---~~~~~~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~~~~~p-------~~~~~~l~is~~e~~t~edid~l~~~l~~i 445 (481)
T PRK04366 377 C---MHEFVLSGKKLKETGVRTLDIAKRLLDY-GFHPPTIYFP-------LIVPEALMIEPTETESKETLDAFIAAMKQI 445 (481)
T ss_pred e---eEEEEEECccccccCCCHHHHHHHHHHC-CccCCccccc-------cccCCeEEEcccCCCCHHHHHHHHHHHHHH
Confidence 0 1112222 233456788999999988 9986522110 012568999999999999999999999999
Q ss_pred HHhhhc
Q 012718 451 VSFFNV 456 (458)
Q Consensus 451 ~~~~~~ 456 (458)
.+++.+
T Consensus 446 ~~~~~~ 451 (481)
T PRK04366 446 AEEAKE 451 (481)
T ss_pred HHHHHh
Confidence 887653
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-30 Score=252.68 Aligned_cols=329 Identities=13% Similarity=0.092 Sum_probs=235.8
Q ss_pred CeEEecCCCCCC-CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCC--CCCCcEEEeCChhHHHH
Q 012718 67 KLVYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA--SDSGEIVFTKNATEAIN 143 (458)
Q Consensus 67 ~~i~l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~a~~ 143 (458)
..+.|..+.... .++.+.+++.+....... ++......++|+.++++++. .++++|++|+|+++++.
T Consensus 86 ~~i~L~~g~p~~~~~p~~~~~~~~~~~~~~~----------Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~ 155 (431)
T PRK15481 86 PLHDLAGGNPDPQRLPDLSRYFARLSRTPRL----------YGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIE 155 (431)
T ss_pred hhhhhhcCCCChhHhHHHHHHHHHhhhhhhh----------cCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHH
Confidence 456666654442 234455565554332111 11123345688889988873 33348999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEe-cccCcCc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIH-HISNMLA 222 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~-~~~n~tG 222 (458)
+++.++ +++||.|++++|+|+ .+...++..|++++.+++++++ +|++.+++++++++++++++ +++||||
T Consensus 156 ~~~~~l----~~pgd~Vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~~~~k~i~~~p~p~NPTG 226 (431)
T PRK15481 156 RLLCAH----LLPGDSVAVEDPCFL----SSINMLRYAGFSASPVSVDAEG-MQPEKLERALAQGARAVILTPRAHNPTG 226 (431)
T ss_pred HHHHHh----CCCCCEEEEeCCCcH----HHHHHHHHcCCeEEeeccCCCC-CCHHHHHHHHhcCCCEEEECCCCCCCCC
Confidence 999988 789999999999999 5577777889999999997665 79999999998888888775 9999999
Q ss_pred ccccHH---HHHHHHHhc-CcEEEEeccccCCc----cc-CCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCC
Q 012718 223 SILPIE---EIVHWSHDV-GAKVLVDACQSVPH----MV-VDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMP 291 (458)
Q Consensus 223 ~~~~l~---~i~~l~~~~-~~~vivD~a~~~g~----~~-~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~ 291 (458)
.+++.+ +|.++|+++ +++||+|++|+.-. .+ +.. .....+++.|+||.|| +| +||++.++++++.+.
T Consensus 227 ~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~-~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~ 304 (431)
T PRK15481 227 CSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQ-TTQRWALIRSVSKALG-PDLRLAFVASDSATSARLR 304 (431)
T ss_pred ccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcC-CCCCEEEEeeeccccC-CCceeEEEeCCHHHHHHHH
Confidence 999965 999999999 99999999987221 11 111 2235689999999988 57 999999988776664
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-TIGMQKIHAYEMELAKYLYENLLSIPNIRIYG 370 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 370 (458)
..... .....+.....++..+++.-. ..-+++.++.+++.++++.+.|++. ++++..
T Consensus 305 ~~~~~---------------------~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~~ 362 (431)
T PRK15481 305 LRLNS---------------------GTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIAIPS 362 (431)
T ss_pred HHHhc---------------------cccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccc
Confidence 22110 011234444444444443210 0115677888899999999999887 666544
Q ss_pred CCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
+. .+.++|++++. +..++.+.|.++ ||.+.+|..+... +..+++||+++. .+.++++++++.|.++
T Consensus 363 p~------gg~f~~~~l~~-~~~~~~~~l~~~-gV~v~pg~~f~~~-----~~~~~iRis~~~-~~~~~i~~~~~~l~~~ 428 (431)
T PRK15481 363 PG------DGLNLWLPLDT-DSQATALTLAKS-GWLVREGEAFGVS-----APSHGLRITLST-LNDAEINRLAADLHQA 428 (431)
T ss_pred CC------CeEEEEEECCC-CHHHHHHHHHHC-CcEEecCCccccC-----CCCCeEEEEcCC-CChHHHHHHHHHHHHH
Confidence 43 16789999875 467888888877 9999998855221 114689999996 5689999999999998
Q ss_pred HH
Q 012718 451 VS 452 (458)
Q Consensus 451 ~~ 452 (458)
++
T Consensus 429 ~~ 430 (431)
T PRK15481 429 LN 430 (431)
T ss_pred hc
Confidence 75
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-29 Score=218.43 Aligned_cols=354 Identities=17% Similarity=0.205 Sum_probs=286.5
Q ss_pred ecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcC
Q 012718 71 LDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWG 150 (458)
Q Consensus 71 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~ 150 (458)
|-..++..+|+.+.+++... ...+++++..+.+.++++-+...|........++.++|+.+++.++-.+
T Consensus 20 L~gPGPsnl~~~V~~A~~~~----------~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~- 88 (385)
T KOG2862|consen 20 LLGPGPSNLSGRVQEAMSRP----------SLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNL- 88 (385)
T ss_pred eecCCCcCCCHHHHHhhcCC----------ccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhh-
Confidence 33445556888888887543 3456677889999999999999998877668899999999999999988
Q ss_pred CCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCccccc-HH
Q 012718 151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILP-IE 228 (458)
Q Consensus 151 ~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~-l~ 228 (458)
+.|||+|++...+-.+. .+...+++.|++|..|+.+......++.+++++.+ ++++++++|..+.||...| ++
T Consensus 89 ---lePgd~vLv~~~G~wg~--ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~ 163 (385)
T KOG2862|consen 89 ---LEPGDNVLVVSTGTWGQ--RAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLA 163 (385)
T ss_pred ---cCCCCeEEEEEechHHH--HHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHH
Confidence 78999999998888777 56788999999999999888888899999999987 5699999999999999999 78
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
.+.++||+|+++++||.+.++|..++.++++++|+.....+| +.+|+|++.+.++++..+++.....+... .|++.
T Consensus 164 ~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~---~yFd~ 240 (385)
T KOG2862|consen 164 ISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVS---FYFDI 240 (385)
T ss_pred HHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceE---EEEeH
Confidence 889999999999999999999999999999999999999999 55699999999998877666544332211 22221
Q ss_pred ----CCCC-CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-
Q 012718 308 ----STFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA- 381 (458)
Q Consensus 308 ----~~~~-~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~- 381 (458)
..|. ....+...-|++...++++.+||+.+.+.|+++..++.++++++++..|+++ |.+.....+. .+.+
T Consensus 241 ~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~---~rlpt 316 (385)
T KOG2862|consen 241 LRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEE---LRLPT 316 (385)
T ss_pred HhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChh---hccCc
Confidence 1121 1122444569999999999999999999999999999999999999999998 8776655543 4455
Q ss_pred EEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhh
Q 012718 382 LCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH-FYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 382 ~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.-.+.++ +.+..+++.++..+|++.+..|.-.. .+.++||.+. ...+.+-|+..++.|+..+++.+
T Consensus 317 vttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~--------~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~~ 384 (385)
T KOG2862|consen 317 VTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPT--------VGKVFRIGLLGCNANVEYIDNVVELLKLALQRKK 384 (385)
T ss_pred ceeeecCCCCCHHHHHHHHHHhcCEEeccccCCC--------cccEEEEEEeeccCCcHHHHHHHHHHHHHHhhcc
Confidence 4456666 78899999999999888776543111 1568999865 44488999999999999988654
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-29 Score=246.37 Aligned_cols=337 Identities=16% Similarity=0.170 Sum_probs=236.8
Q ss_pred CCCeEEecCCCCC----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEE
Q 012718 65 SKKLVYLDNAATS----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVF 134 (458)
Q Consensus 65 ~~~~i~l~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~ 134 (458)
+.+++.|..+..+ ++++.+.+++.+.+.... + . +.......++|++++++++ .++ ++|++
T Consensus 29 ~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~-~----~----Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~i 98 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGH-N----Y----YGPSEGLPELREAIVKREKRKNGVDITP-DDVRV 98 (398)
T ss_pred CCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCC-C----C----CCCCCCcHHHHHHHHHHHHHhcCCCCCh-hhEEE
Confidence 3678999988763 578888888887765320 0 0 1112334578888888873 344 39999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE-eCCCC-CCCCHHHHHHhhcCCceEE
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL-NLNDD-ESPDLDKLKEMLSRKTKLV 212 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v-~~~~~-~~~d~~~l~~~l~~~~~~v 212 (458)
|+|+++|+.+++.++ +++||.|++++|+|... ...++..|.+++.+ +.+++ +.+|++.+++.+.++++++
T Consensus 99 t~G~~~al~~~~~~~----~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v 170 (398)
T PRK08363 99 TAAVTEALQLIFGAL----LDPGDEILIPGPSYPPY----TGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAI 170 (398)
T ss_pred eCCHHHHHHHHHHHh----CCCCCEEEEcCCCCcch----HHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEE
Confidence 999999999999988 78999999999999954 55667779888888 45444 4689999999998889999
Q ss_pred EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-----c-CCCCCCCCcEEEecccCCCCCCc--eeEEE
Q 012718 213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----V-VDVQGLDADFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 213 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-----~-~~~~~~~~d~~~~s~~K~~gp~g--~G~l~ 281 (458)
++++++||||.+++ +++|.++|+++|+++|+|++|..... + ..+......+++.|+||.|+.+| +||++
T Consensus 171 ~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~ 250 (398)
T PRK08363 171 AVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIY 250 (398)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEE
Confidence 99999999999999 78899999999999999999873221 0 11222234677889999887666 99999
Q ss_pred E--eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 282 G--KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 282 ~--~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
+ ++++++.+........ .... +.+.....++..++....+ .+.+.+++++++++++.+.
T Consensus 251 ~~~~~~~~~~l~~~~~~~~-----------------~~~~-~~s~~~q~~~~~~l~~~~~-~l~~~~~~~~~~~~~l~~~ 311 (398)
T PRK08363 251 FVDPEGKLAEVREAIDKLA-----------------RIRL-CPNTPAQFAAIAGLTGPMD-YLEEYMKKLKERRDYIYKR 311 (398)
T ss_pred EeCcHHHHHHHHHHHHHHh-----------------cccc-cCChHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHH
Confidence 8 5554444332211000 0001 2233333333344432111 2566778888999999999
Q ss_pred HhcCCCEEEeCCCCCCcCcccc-EEEEEeCC---CChHHHHHH-HhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAA-LCSFNVEN---IHPTDIATL-LDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY 434 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~---~~~~~~~~~-l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~ 434 (458)
|.+++++++..+. ++ ++|+++++ .+..+++.. |.++ ||.+.+|..+... .++++|++++
T Consensus 312 L~~~~~~~~~~p~-------g~~~~~~~l~~~~~~~~~~~~~~~l~~~-gV~v~~g~~f~~~------~~~~iRis~~-- 375 (398)
T PRK08363 312 LNEIPGISTTKPQ-------GAFYIFPRIEEGPWKDDKEFVLDVLHEA-HVLFVHGSGFGEY------GAGHFRLVFL-- 375 (398)
T ss_pred HhcCCCCEecCCC-------eEEEEEEEeccCCCCCHHHHHHHHHHhC-CEEEeCchhhCCC------CCCeEEEEec--
Confidence 9888787765443 44 66667764 244556544 4566 9999998754221 1579999997
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 012718 435 NTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 435 ~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.+++++.+++|.+++++.
T Consensus 376 ~~~~~l~~~l~~l~~~~~~~ 395 (398)
T PRK08363 376 PPVEILEEAMDRFEEFMRER 395 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 57899999999999988753
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-30 Score=248.30 Aligned_cols=335 Identities=20% Similarity=0.212 Sum_probs=239.8
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~g~ 138 (458)
++.+.|..+... ++++.+.+++.+.+..... .+.......++|+++++++ |. +++.+|++|+|+
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~---------~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~ 98 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAITENYT---------SYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGA 98 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhcCCC---------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCh
Confidence 567889888765 4567788888887653110 0111233457888888887 33 332289999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
++|+.+++.++ +++||.|+++.|+|... ...++..|++++.++.+++ ..+|.+.+++.+.+++++++++++
T Consensus 99 ~~al~~~~~~l----~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p 170 (387)
T PRK07683 99 SEAIDIAFRTI----LEPGTEVILPAPIYPGY----EPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYP 170 (387)
T ss_pred HHHHHHHHHHh----CCCCCEEEEcCCCccch----HHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCC
Confidence 99999999887 68999999999999854 5555677999999998754 556889999999888999999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCC----CCCcEEEecccCCCCCCc--eeEEEEecc
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG----LDADFLVASSHKMCGPTG--IGFLFGKSD 285 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~----~~~d~~~~s~~K~~gp~g--~G~l~~~~~ 285 (458)
+||||..++ +++|+++|+++|+++|+|++|..... +..+.. .+..+++.|+||.+|.+| +||++++++
T Consensus 171 ~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~ 250 (387)
T PRK07683 171 SNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSY 250 (387)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHH
Confidence 999999998 77889999999999999999984321 112211 235788999999998667 999999988
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+++.+..... +....++.....++...++.-. ..++++++++++.++++.+.|.+. +
T Consensus 251 l~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~ 307 (387)
T PRK07683 251 LAKHILKVHQ---------------------YNVTCASSISQYAALEALTAGK-DDAKMMRHQYKKRRDYVYNRLISM-G 307 (387)
T ss_pred HHHHHHHHHH---------------------hccCCCChHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 7776653221 1111222223333333333211 125667788888999999999876 6
Q ss_pred EEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEF 443 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l 443 (458)
+.+..+. .+.+++..++. .+..++...+.+++||.+.+|..+... .++++||+++. +++++.+.
T Consensus 308 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~------~~~~~Ri~~~~--~~~~~~~a 373 (387)
T PRK07683 308 LDVEKPT------GAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEY------GEGYVRLSYAY--SIETLKEG 373 (387)
T ss_pred CcccCCC------eeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCC------CCCeEEEEecC--CHHHHHHH
Confidence 6655443 14466666663 456677766544449999998755321 15799999994 78999999
Q ss_pred HHHHHHHHHhh
Q 012718 444 IHALNETVSFF 454 (458)
Q Consensus 444 ~~~l~~~~~~~ 454 (458)
+++|.+++++-
T Consensus 374 l~~l~~~l~~~ 384 (387)
T PRK07683 374 LDRLEAFLQQK 384 (387)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=241.20 Aligned_cols=318 Identities=15% Similarity=0.237 Sum_probs=235.0
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
+.+.|+.+... .+|+.+.+++.+.+.....++. ....++|++++++++++++ +|++|+|+++++..+
T Consensus 20 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~Y~~-----------~~~~~lr~~ia~~~~~~~~-~i~it~Ga~~~l~~~ 87 (354)
T PRK06358 20 MILDFSANINPLGVPESLKQAITENLDKLVEYPD-----------PDYLELRKRIASFEQLDLE-NVILGNGATELIFNI 87 (354)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHhhhcCCC-----------ccHHHHHHHHHHHhCCChh-hEEECCCHHHHHHHH
Confidence 46788776544 5678888888887654322221 1245899999999999876 999999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
+.++ .+ +.|+++.|+|+ .+...++..|++++.++.+++ +.+| +++.+.+.++++++++++|+||||.
T Consensus 88 ~~~~-----~~-~~v~i~~P~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~ 156 (354)
T PRK06358 88 VKVT-----KP-KKVLILAPTFA----EYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQ 156 (354)
T ss_pred HHHh-----CC-CcEEEecCChH----HHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCC
Confidence 9876 23 57999999998 556667788999999998754 4577 6666666678899999999999999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEeccccCCcc---c---C-CCCCCCCcEEEecccCCCCCCc--eeEEEEe-ccccccC
Q 012718 224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHM---V---V-DVQGLDADFLVASSHKMCGPTG--IGFLFGK-SDLLSAM 290 (458)
Q Consensus 224 ~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~---~-~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~-~~~~~~l 290 (458)
.++ +++|.++|+++|+++|+|++|..-.. + + .+...+..+++.|+||.+|.+| +||++++ +.+++.+
T Consensus 157 ~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~ 236 (354)
T PRK06358 157 LISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKL 236 (354)
T ss_pred ccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHH
Confidence 998 77888889999999999999862111 0 1 1223345688899999999777 9999985 4555554
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYG 370 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 370 (458)
..... ..+.+.....++..+++.-. -+++..+.+++.++++.+.|++++++++..
T Consensus 237 ~~~~~-----------------------~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ 291 (354)
T PRK06358 237 LQMRE-----------------------PWSINTFADLAGQTLLDDKE--YIKKTIQWIKEEKDFLYNGLSEFKGIKVYK 291 (354)
T ss_pred HHhCC-----------------------CCcchHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHhcCCCcEEcC
Confidence 43221 11233334444444443211 146677788888999999998887877665
Q ss_pred CCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
+. +++++++++. ..++.+.|.++ ||.+++|..+.. ..++++||+++ +.++.++++++|+++
T Consensus 292 ~~-------g~f~~~~~~~--~~~~~~~l~~~-gI~v~~~~~f~~------~~~~~iRls~~---~~~~~~~l~~~l~~~ 352 (354)
T PRK06358 292 PS-------VNFIFFKLEK--PIDLRKELLKK-GILIRSCSNYRG------LDENYYRVAVK---SREDNKKLLKALEVI 352 (354)
T ss_pred Cc-------ceEEEEEcCc--hHHHHHHHHHC-CeEEEECCCCCC------CCCCEEEEEeC---CHHHHHHHHHHHHHH
Confidence 43 6788998874 47899999987 999999875421 12578999998 789999999999887
Q ss_pred H
Q 012718 451 V 451 (458)
Q Consensus 451 ~ 451 (458)
+
T Consensus 353 ~ 353 (354)
T PRK06358 353 L 353 (354)
T ss_pred h
Confidence 5
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=246.24 Aligned_cols=338 Identities=18% Similarity=0.161 Sum_probs=237.6
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~a~~ 143 (458)
++++.|..+... +.++.+.+++.+.+..... .+....+..+..+.+.+.+++.+|.+ .+++|++|+|+++|+.
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~-----~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 107 (402)
T PRK06107 33 RSIVDLTVGEPDFDTPDHIKQAAVAAIERGET-----KYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIF 107 (402)
T ss_pred CCEEEcCCCCCCCCCCHHHHHHHHHHHHcCCC-----CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence 567888888766 4567788888877753110 01100112334445555555566764 2248999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
.++.++ +++||.|++++|+|... .......|..++.++.+. ++.+|++.+++.+.++++++++++|+|||
T Consensus 108 ~~~~~~----~~~gd~vl~~~p~y~~y----~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPt 179 (402)
T PRK06107 108 LALMAT----LEAGDEVIIPAPYWVSY----PDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPT 179 (402)
T ss_pred HHHHHh----cCCCCEEEEecCCCcCH----HHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCC
Confidence 999876 78999999999988743 333455678888888763 25689999999998889999999999999
Q ss_pred ccccc---HHHHHHHHHhc-CcEEEEeccccC----CcccCCCC-----CCCCcEEEecccCCCCCCc--eeEEEEeccc
Q 012718 222 ASILP---IEEIVHWSHDV-GAKVLVDACQSV----PHMVVDVQ-----GLDADFLVASSHKMCGPTG--IGFLFGKSDL 286 (458)
Q Consensus 222 G~~~~---l~~i~~l~~~~-~~~vivD~a~~~----g~~~~~~~-----~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~ 286 (458)
|..++ +++|+++|+++ ++++|+|++|+. +.....+. ..+..++++|+||.||.+| +||++.++++
T Consensus 180 G~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~ 259 (402)
T PRK06107 180 GAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADL 259 (402)
T ss_pred CcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHH
Confidence 99998 56778889998 999999999962 11101111 1135788889999888777 8999999988
Q ss_pred cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Q 012718 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~ 366 (458)
++.+..... ....+++.....++..+++.-.. -+++.++.+++.++.+.+.|++++++
T Consensus 260 ~~~~~~~~~---------------------~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~g~ 317 (402)
T PRK06107 260 IAAINKLQS---------------------QSSSCPSSISQAAAAAALNGDQS-FVTESVAVYKQRRDYALALLNAIPGL 317 (402)
T ss_pred HHHHHHHHH---------------------hcccCCChHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 776664332 00123444444455444431111 25677788888899999999887777
Q ss_pred EEeCCCCCCcCccccEEEEEeCC------------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC
Q 012718 367 RIYGPKPSEHVQRAALCSFNVEN------------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY 434 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~~------------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~ 434 (458)
++..+.. +.++|++++. .+..++++.+.++.||.+.+|..+ |.++++|++++
T Consensus 318 ~~~~p~g------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~F--------g~~~~iRis~~-- 381 (402)
T PRK06107 318 SCLVPDG------AFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAY--------GLSPYFRLSIA-- 381 (402)
T ss_pred cccCCCc------ceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCcccc--------CCCCeEEEEeC--
Confidence 7654431 5577887632 134577766654449999998743 44689999999
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 012718 435 NTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 435 ~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.+++++++++|.++++++
T Consensus 382 ~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 382 TSLETLEEACARIERAVAAL 401 (402)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 47999999999999988765
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=245.16 Aligned_cols=334 Identities=13% Similarity=0.126 Sum_probs=234.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~~v~~t~g~t~a~ 142 (458)
++++.|+.+... ++++.+.+++.+.+.... ..+....+..+..+.+.+.+++++|.+ +.++|++|+|+++++
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-----~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al 103 (384)
T PRK12414 29 HDALNLSQGAPNFAPDPALVEGVARAMRDGH-----NQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGL 103 (384)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHHhCC-----CCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHH
Confidence 467899888766 457888888887665310 011111123445556666666777875 224799999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
..++.++ +++||+|++++|+|... ...++..|++++.+++++ ++.+|++.+++.+++++++|++++++|||
T Consensus 104 ~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPT 175 (384)
T PRK12414 104 YAAISAL----VHPGDEVIYFEPSFDSY----APIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPS 175 (384)
T ss_pred HHHHHHh----cCCCCEEEEeCCCccch----HHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCC
Confidence 9999987 78999999999999843 455566799999999874 46789999999998889999999999999
Q ss_pred ccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCC---C-CCCcEEEecccCCCCCCc--eeEEEEeccccc
Q 012718 222 ASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQ---G-LDADFLVASSHKMCGPTG--IGFLFGKSDLLS 288 (458)
Q Consensus 222 G~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~---~-~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~ 288 (458)
|.+++ +++|+++|+++|+++|+|++|..-. ....+. . .+..+++.|+||.+|.+| +||+++++++++
T Consensus 176 G~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~ 255 (384)
T PRK12414 176 ATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMD 255 (384)
T ss_pred CcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHH
Confidence 99987 6788889999999999999997321 111121 1 224689999999998777 899999998876
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+...... ...+.+.....++...++.-. ...++++.+++.++++.+.|++. ++++
T Consensus 256 ~l~~~~~~---------------------~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~r~~l~~~L~~~-g~~~ 311 (384)
T PRK12414 256 EIRKVHQF---------------------MVFSADTPMQHAFAEALAEPA--SYLGLGAFYQRKRDLLARELAGS-RFEL 311 (384)
T ss_pred HHHHHHhh---------------------eecCCCcHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHhC-CCee
Confidence 66533210 011222333334444443211 13456777888899999999887 7776
Q ss_pred eCCCCCCcCccccEEEEEeCC---CChHHHHHH-HhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVEN---IHPTDIATL-LDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~-l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
..+. .+.++|++++. .+..+++.. +.++ ||.+.+|..+.... ...+++||+++ .+++++++.+
T Consensus 312 ~~~~------gg~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~v~pg~~f~~~~----~~~~~iRis~~--~~~~~~~~~~ 378 (384)
T PRK12414 312 LPSE------GSFFMLARFRHFSDESDSDFVLRLIRDA-RVATIPLSAFYTDG----TDTGLIRLSFS--KDDATLVEGA 378 (384)
T ss_pred cCCC------cceEEEEcccccCCCCHHHHHHHHHHhC-CEEEecchhhcCCC----CCCCEEEEEec--CCHHHHHHHH
Confidence 5443 14467777753 345566654 4555 99999987542110 01478999999 4688999888
Q ss_pred HHHHH
Q 012718 445 HALNE 449 (458)
Q Consensus 445 ~~l~~ 449 (458)
++|.+
T Consensus 379 ~rl~~ 383 (384)
T PRK12414 379 RRLCS 383 (384)
T ss_pred HHHhh
Confidence 88764
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=244.36 Aligned_cols=322 Identities=14% Similarity=0.194 Sum_probs=229.4
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC--------CCCCCcEEEeCC
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN--------ASDSGEIVFTKN 137 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~~v~~t~g 137 (458)
+.+.|+.+.+. ++|+.+.+++.+.+..... .. .+ . .....++|++++++++ ++++ +|++|+|
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~Y----~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~-~I~it~G 99 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIE-SN--RY----P-DGGHEALKQAIAEYVNESAAGSSQITPA-NISVGNG 99 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhccc-cc--CC----C-CCchHHHHHHHHHHhCccccccCCCCHH-HEEEcCC
Confidence 46888888877 6788899998886654110 00 01 0 1234579999999997 4544 8999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCC-EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhc----CCceE
Q 012718 138 ATEAINLVAYSWGLSNLKSGD-EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLS----RKTKL 211 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~-~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~----~~~~~ 211 (458)
+++++..++.++ +.+|+ .|++++|+|. .+...++..|++++.++.+++ +.+|++++++.++ .++++
T Consensus 100 a~~al~~~~~~~----~~~g~~~Vlv~~P~y~----~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~ 171 (374)
T PRK02610 100 SDELIRSLLIAT----CLGGEGSILVAEPTFS----MYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRV 171 (374)
T ss_pred hHHHHHHHHHHH----cCCCCCeEEEcCCChH----HHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceE
Confidence 999999877765 45665 8999999998 557777888999999998754 6789999999886 47899
Q ss_pred EEEecccCcCcccccHHHHHHHHH-hcCcEEEEeccccCCcc--c-CCCCCCCCcEEEecccCCCCCCc--eeEEEEecc
Q 012718 212 VVIHHISNMLASILPIEEIVHWSH-DVGAKVLVDACQSVPHM--V-VDVQGLDADFLVASSHKMCGPTG--IGFLFGKSD 285 (458)
Q Consensus 212 v~~~~~~n~tG~~~~l~~i~~l~~-~~~~~vivD~a~~~g~~--~-~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~ 285 (458)
|++++|+||||.+++.+++.++++ .++++||+|++|.--.. . ..+......+++.|+||.+|.+| +||++.+++
T Consensus 172 i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~ 251 (374)
T PRK02610 172 VFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPE 251 (374)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeecCHH
Confidence 999999999999999666555543 14899999999973211 1 11222234578899999998888 999999888
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+++.+......+ +.+.....++..+++..... .+.+++.. +.++.+.+.|+++++
T Consensus 252 l~~~l~~~~~~~-----------------------~~~~~~q~a~~~~l~~~~~~-~~~~~~~~-~~r~~l~~~L~~~~~ 306 (374)
T PRK02610 252 LIAVLEKVRLPY-----------------------NLPSFSQLAAQLALEHRQEL-LAAIPEIL-QERDRLYQALQELPQ 306 (374)
T ss_pred HHHHHHHhcCCC-----------------------CCCHHHHHHHHHHhcCHHHH-HHHHHHHH-HHHHHHHHHHHhCCC
Confidence 877665332111 12333334444555433221 33334333 346778888887777
Q ss_pred EEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
+.+. +. .++++|++++. .+..++.+.+.++ ||.++++ .+++||+++ +.+++++++
T Consensus 307 ~~~~-p~------~g~f~~~~l~~~~~~~~~~~~l~~~-gi~v~~~-------------~~~lRls~~---~~~~~~~~l 362 (374)
T PRK02610 307 LRVW-PS------AANFLYLRLSQDAALAALHQALKAQ-GTLVRHT-------------GGGLRITIG---TPEENQRTL 362 (374)
T ss_pred cEeC-CC------cceEEEEeCCCCCCHHHHHHHHHHC-CEEEEeC-------------CCeEEEeCC---CHHHHHHHH
Confidence 7653 32 16789999874 4678899998877 9998642 468999988 357899999
Q ss_pred HHHHHHHHhh
Q 012718 445 HALNETVSFF 454 (458)
Q Consensus 445 ~~l~~~~~~~ 454 (458)
++|+++++.+
T Consensus 363 ~~l~~~l~~~ 372 (374)
T PRK02610 363 ERLQAALTQL 372 (374)
T ss_pred HHHHHHHhhc
Confidence 9999988754
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=244.82 Aligned_cols=317 Identities=15% Similarity=0.168 Sum_probs=234.7
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+++++|+.+.++ ++|+.+.+++.+++.....++. ...+++|+.+|++++++++ +|++|+|+++++..
T Consensus 22 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~-----------~g~~~lr~~ia~~~~~~~~-~I~~~~G~~~~l~~ 89 (352)
T PRK03321 22 PGAIKLSSNETPFGPLPSVRAAIARAAAGVNRYPD-----------MGAVELRAALAEHLGVPPE-HVAVGCGSVALCQQ 89 (352)
T ss_pred ccceeccCCCCCCCCCHHHHHHHHHHHHhcCcCCC-----------CcHHHHHHHHHHHhCcCHH-HEEECCCHHHHHHH
Confidence 357889988776 4777899999887764332221 2356899999999998765 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++.++ +++||.|+++.++|. .+...++..|++++.++.++++.+|++.+++.++++++++++++++||||.+
T Consensus 90 ~~~~~----~~~gd~Vli~~p~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~ 161 (352)
T PRK03321 90 LVQAT----AGPGDEVIFAWRSFE----AYPILVQVAGATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTV 161 (352)
T ss_pred HHHHh----cCCCCEEEeCCCCHH----HHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCC
Confidence 98877 789999999999887 3355567789999999998678889999999998899999999999999999
Q ss_pred ccHHHHHHHHHh--cCcEEEEeccccCCcc----c--CC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCc
Q 012718 225 LPIEEIVHWSHD--VGAKVLVDACQSVPHM----V--VD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 225 ~~l~~i~~l~~~--~~~~vivD~a~~~g~~----~--~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~ 293 (458)
+|.++|.++|++ +++++|+|++|..... + +. +...+..++++|+||.||.+| +||+++++++++.+...
T Consensus 162 ~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~ 241 (352)
T PRK03321 162 VTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKV 241 (352)
T ss_pred cCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHh
Confidence 999999999987 5999999999872211 1 11 122235678889999998777 99999998877766532
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
.. ..+.+.....++.+++..... +.+..+...+.++.+.+.|.+. ++.+..+
T Consensus 242 ~~-----------------------~~~~s~~~q~~a~~~l~~~~~--~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~-- 293 (352)
T PRK03321 242 AV-----------------------PFSVNSLAQAAAIASLAAEDE--LLERVDAVVAERDRVRAALRAA-GWTVPPS-- 293 (352)
T ss_pred cC-----------------------CCCCCHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHC-CCccCCC--
Confidence 11 123344444444444442222 2233333445556788888776 6554221
Q ss_pred CCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
.+++++++++. +..++.+.|.++ ||.+++. + ..++||+++ +.+++++++++|++++.
T Consensus 294 -----~g~~i~i~l~~-~~~~~~~~l~~~-gI~v~~~-----------~-~~~iRi~~~---~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 294 -----QANFVWLPLGE-RTADFAAAAAEA-GVVVRPF-----------A-GEGVRVTIG---APEENDAFLRAARAWRA 350 (352)
T ss_pred -----CCCEEEEeCCC-CHHHHHHHHHHC-CEEEEcc-----------C-CCcEEEeeC---CHHHHHHHHHHHHHHhc
Confidence 16788888753 467899999877 9998752 1 346999986 78999999999998764
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=248.00 Aligned_cols=339 Identities=15% Similarity=0.155 Sum_probs=233.4
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~g 137 (458)
+++++.|+.+... ++|+.+.+++.+.+... ... .+.......++|+++|+++ |. +++++|++|+|
T Consensus 29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~----~~~----~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G 100 (405)
T PRK09148 29 GADIIDLGMGNPDLPTPQHIVDKLCETAQDP----RTH----RYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLG 100 (405)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHcCc----ccC----CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCC
Confidence 4567889888765 45677777877665321 000 1111233447777777776 43 33337999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCC--CCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDES--PDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~--~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++++.+++.++ +++||.|++++|+|+.. ...++..|++++.++++.++. .+++.+.+...+++++++++
T Consensus 101 ~~~al~~~~~~l----~~~gd~Vl~~~P~y~~~----~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~ 172 (405)
T PRK09148 101 SKEGFANMAQAI----TAPGDVILCPNPSYPIH----AFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVN 172 (405)
T ss_pred hHHHHHHHHHHh----cCCCCEEEEcCCCCccc----HHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEe
Confidence 999999999988 78999999999999965 444456799999999875533 23333333334678999999
Q ss_pred cccCcCcccccH---HHHHHHHHhcCcEEEEeccccCCc----ccCC---CCC-CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILPI---EEIVHWSHDVGAKVLVDACQSVPH----MVVD---VQG-LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~l---~~i~~l~~~~~~~vivD~a~~~g~----~~~~---~~~-~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+|+||||.+++. ++|.++|+++|++||+|++|..-. .... +.. .+..+++.|+||.+|.+| +||++.
T Consensus 173 ~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~ 252 (405)
T PRK09148 173 YPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG 252 (405)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeC
Confidence 999999999994 688899999999999999997321 1111 211 124567899999999888 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+..... +...+.+.....++...++... .-+++.++.+++.++++.+.|++
T Consensus 253 ~~~~i~~l~~~~~---------------------~~~~~~~~~~q~~~~~~L~~~~-~~~~~~~~~~~~~r~~l~~~L~~ 310 (405)
T PRK09148 253 NERLIAALTRVKS---------------------YLDYGAFTPIQVAATAALNGPQ-DCIAEMRELYKKRRDVLVESFGR 310 (405)
T ss_pred CHHHHHHHHHHHH---------------------HhccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888776653321 0001222223333333443211 12567788889999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCC----CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVEN----IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
. ++.+..+. .+.++|++++. .+..++.+.+.++.||.+.+|..+.. ..++++||++. .+.+
T Consensus 311 ~-~~~~~~p~------~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~------~~~~~~Ri~~~--~~~~ 375 (405)
T PRK09148 311 A-GWDIPPPA------ASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGE------HGDGYVRIALV--ENEQ 375 (405)
T ss_pred c-CCccCCCC------eeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCC------CCCCeEEEEec--CCHH
Confidence 6 66544332 25688998874 23567887766433999999875421 12579999998 5789
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 012718 439 DVDEFIHALNETVSFFNV 456 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~~ 456 (458)
++.+.++.|.+++++..+
T Consensus 376 ~l~~al~~l~~~l~~~~~ 393 (405)
T PRK09148 376 RIRQAARNIKRFLSSADE 393 (405)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998876543
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=243.98 Aligned_cols=320 Identities=18% Similarity=0.221 Sum_probs=232.7
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
++++.|+.+... .+++.+.+++.+.......+++ ... ..+|+++++++|++++ +|++|+|+++++..
T Consensus 36 ~~~i~l~~~~~~~~~~~~~~~al~~~~~~~~~Y~~----------~~g-~~lr~~ia~~~~~~~~-~i~~t~G~~~~l~~ 103 (371)
T PRK05166 36 PRIAKLGSNENPLGPSPAVRRAFADIAELLRLYPD----------PQG-RALREAIAARTGVPAD-RIILGNGSEDLIAV 103 (371)
T ss_pred cceEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCC----------CcH-HHHHHHHHHHhCcCHH-HEEEcCCHHHHHHH
Confidence 578999988655 5677788888765443222221 122 2789999999999765 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++.++ +++||.|+++.|+|+. +...++..|++++.++.++++.+|++++++.++++++++++++++||||.+
T Consensus 104 ~~~~~----~~~gd~vli~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~ 175 (371)
T PRK05166 104 ICRAV----LRPGDRVVTLYPSFPL----HEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSW 175 (371)
T ss_pred HHHHh----cCCCCEEEEcCCChHH----HHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCC
Confidence 99887 6899999999999984 456677889999999998788889999999998889999999999999999
Q ss_pred ccHHHHHHHHHh--cCcEEEEeccccCCcc----c--CC-CCCC-CCcEEEecccCCCCCCc--eeEEEE-eccccccCC
Q 012718 225 LPIEEIVHWSHD--VGAKVLVDACQSVPHM----V--VD-VQGL-DADFLVASSHKMCGPTG--IGFLFG-KSDLLSAMP 291 (458)
Q Consensus 225 ~~l~~i~~l~~~--~~~~vivD~a~~~g~~----~--~~-~~~~-~~d~~~~s~~K~~gp~g--~G~l~~-~~~~~~~l~ 291 (458)
+|.+++.++++. ++++||+|++|..-.. + +. +... ...+++.|+||.||.+| +||+++ ++++++.+.
T Consensus 176 ~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~ 255 (371)
T PRK05166 176 LTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLD 255 (371)
T ss_pred CCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHH
Confidence 997766666553 4889999999872211 1 11 1111 24688899999999777 899887 455555443
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
..... ...+.....++..++..- ..+++..+.+++.++++.+.|++. ++++. +
T Consensus 256 ~~~~~-----------------------~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-p 308 (371)
T PRK05166 256 RVRTP-----------------------FNVNGAAQAAALAALDDE--EHLAKGVALALAERERLKKELAEM-GYRIA-P 308 (371)
T ss_pred HhccC-----------------------CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHC-cCeeC-C
Confidence 22110 112332333333333221 125666677788889999999887 66653 2
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
. . +.++|++++. +..++.+.|.++ ||.+++|.. .+.++++||+++ +.++.+++++.|+.++
T Consensus 309 ~-~-----g~fl~~~~~~-~~~~l~~~l~~~-gi~v~p~~~--------~~~~~~iRi~~~---~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 309 S-R-----ANFLFFDARR-PASAVAEALLRQ-GVIVKPWKQ--------PGFETFIRVSIG---SPEENDHFVAALDKVL 369 (371)
T ss_pred C-c-----CCEEEEeCCC-CHHHHHHHHHHC-CeEEecCCC--------CCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 2 1 6788888653 567899999988 999998753 133789999999 5678999999888765
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=243.50 Aligned_cols=279 Identities=16% Similarity=0.177 Sum_probs=210.4
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCC-CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC
Q 012718 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND 192 (458)
Q Consensus 114 ~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~ 192 (458)
.++|+++|+++|++++ +|++|+|+++++.+++.++ .++| |+|++++|+|. .+...++..|++++.+|+++
T Consensus 63 ~~Lr~aia~~~~~~~~-~I~it~Gs~~~i~~~~~~~----~~~g~d~vlv~~P~y~----~y~~~~~~~g~~v~~v~~~~ 133 (354)
T PRK04635 63 PELINAYSAYAGVAPE-QILTSRGADEAIELLIRAF----CEPGQDSIACFGPTYG----MYAISAETFNVGVKALPLTA 133 (354)
T ss_pred HHHHHHHHHHhCcCHH-HEEEeCCHHHHHHHHHHHh----cCCCCCeEEEcCCChH----HHHHHHHHcCCEEEEEecCC
Confidence 4799999999999876 9999999999999999988 5777 89999999998 45667788899999999987
Q ss_pred CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh-cCcEEEEeccccCCccc---CCC-CCCCCcEEEec
Q 012718 193 DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD-VGAKVLVDACQSVPHMV---VDV-QGLDADFLVAS 267 (458)
Q Consensus 193 ~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~-~~~~vivD~a~~~g~~~---~~~-~~~~~d~~~~s 267 (458)
++.+|++.+++ + +++++|++++|+||||.++|.+++.++++. .+++||+|++|.-.... .++ .....-+++.|
T Consensus 134 ~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S 211 (354)
T PRK04635 134 DYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRT 211 (354)
T ss_pred CCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEec
Confidence 78889988873 4 688999999999999999999998888876 37999999998632211 111 12234578889
Q ss_pred ccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH---
Q 012718 268 SHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM--- 342 (458)
Q Consensus 268 ~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~--- 342 (458)
+||++|.+| +||+++++++++.+......+ +.+.... .+++..+...+.
T Consensus 212 ~SK~~~l~GlRlG~~i~~~~~~~~l~~~~~~~-----------------------~~~~~~~---~~a~~~l~~~~~~~~ 265 (354)
T PRK04635 212 LSKAFALAGARCGFTLANEELIEILMRVIAPY-----------------------PVPLPVS---EIATQALSEAGLARM 265 (354)
T ss_pred hHHHhhhhHHHHhhhhCCHHHHHHHHhhcCCC-----------------------CCCHHHH---HHHHHHHhcccHHHH
Confidence 999999888 899999998877665332211 1222222 223344433333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcC
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLG 422 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g 422 (458)
.+..+.+++.++++.+.|++++++++..+. +++++++++ +..++.+.+.++ ||.++.+.. .+
T Consensus 266 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-------g~f~~~~~~--~~~~~~~~l~~~-gv~v~~~~~--------~~ 327 (354)
T PRK04635 266 KFQVLDLNAQGARLQAALSMYGGAKVLEGN-------GNYVLAKFD--DVDAVFKALWDA-GIVARAYKD--------PR 327 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceECCCC-------CcEEEEECC--CHHHHHHHHHHC-CEEEEECCC--------CC
Confidence 344456677778999999988667765433 678888876 467788888877 999975421 12
Q ss_pred CCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 423 VNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 423 ~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
.++++|||++ +.+|+++++++|++.
T Consensus 328 ~~~~lRis~~---~~e~~~~l~~al~~~ 352 (354)
T PRK04635 328 LANCIRFSFS---NRAETDKLIGLIRNQ 352 (354)
T ss_pred CCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence 3679999987 789999999999764
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=245.17 Aligned_cols=335 Identities=16% Similarity=0.194 Sum_probs=232.5
Q ss_pred CCCeEEecCCCCC----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc------CCCCCCcEEE
Q 012718 65 SKKLVYLDNAATS----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVF 134 (458)
Q Consensus 65 ~~~~i~l~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~v~~ 134 (458)
+++++.|+.|... ++|+.+.+++.+.+.....++ ......++|+++|+++ +++++ +|++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~~Y~----------~~~G~~~lr~~ia~~~~~~~~~~~~~~-~i~~ 100 (404)
T PRK09265 32 GHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQGYS----------DSKGLFSARKAIMQYYQQKGIPDVDVD-DIYI 100 (404)
T ss_pred CCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCCCCC----------CCCCcHHHHHHHHHHHhccCCCCCCcc-cEEE
Confidence 4688999887553 367788888777654321111 1233457889999988 56655 9999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEE
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLV 212 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v 212 (458)
|+|+++++.+++.++ +++||+|++++|+|.. +...++..|++++.++.+. ++.+|++++++.+.++++++
T Consensus 101 t~G~~~~l~~~~~~~----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v 172 (404)
T PRK09265 101 GNGVSELIVMAMQAL----LNNGDEVLVPAPDYPL----WTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAI 172 (404)
T ss_pred eCChHHHHHHHHHHh----CCCCCEEEEeCCCCcC----hHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEE
Confidence 999999999999887 7899999999999994 4555666799998888764 35689999999998899999
Q ss_pred EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCC---CCCCCCcEEEecccCCCCCCc--eeEE
Q 012718 213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVD---VQGLDADFLVASSHKMCGPTG--IGFL 280 (458)
Q Consensus 213 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~---~~~~~~d~~~~s~~K~~gp~g--~G~l 280 (458)
++++|+||||.+++ +++|+++|+++|++||+|++|..-. .... +......+++.|++|.+|.+| +||+
T Consensus 173 ~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~ 252 (404)
T PRK09265 173 VIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWM 252 (404)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEE
Confidence 99999999999999 8889999999999999999986211 1111 111113467789999998777 8999
Q ss_pred EEe--cc----ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Q 012718 281 FGK--SD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELA 353 (458)
Q Consensus 281 ~~~--~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~ 353 (458)
+++ ++ +++.+... . .. ..+++.....++..++...... .+.+..+++.+.+
T Consensus 253 v~~~~~~~~~~~~~~~~~~-~--------------------~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r 310 (404)
T PRK09265 253 VLSGPKKHAKGYIEGLDML-A--------------------SM-RLCANVPAQHAIQTALGGYQSINELILPGGRLYEQR 310 (404)
T ss_pred EEeCchHHHHHHHHHHHHH-h--------------------cc-ccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 974 22 12212100 0 00 0123333344444444321110 0111224566778
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-----ChH-HHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeE
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-----HPT-DIATLLDQQYGVATRSGHHCAQPLHRYLGVNASA 427 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~-~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~l 427 (458)
+.+.+.|++++++++..+.. +.++|++++.. +.. .+.+.+.++ ||.+.+|..+.. ..++++
T Consensus 311 ~~~~~~L~~~~~~~~~~p~~------g~~l~~~~~~~~~~~~~~~~~~~~~l~~~-gv~v~pg~~F~~------~~~~~~ 377 (404)
T PRK09265 311 DRAWELLNAIPGVSCVKPKG------ALYAFPKLDPKVYPIHDDEQFVLDLLLQE-KVLLVQGTGFNW------PEPDHF 377 (404)
T ss_pred HHHHHHHhcCCCCcccCCCc------ceEEEEEecccccCCCCHHHHHHHHHHhC-CEEEECchhhCC------CCCCeE
Confidence 88889998877777654431 56888888642 233 455566666 999999875421 126799
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 428 RASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 428 Ris~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
|++++ .+.+++++++++|.++++..+
T Consensus 378 Ri~~~--~~~e~l~~~l~rl~~~l~~~~ 403 (404)
T PRK09265 378 RIVTL--PRVDDLEEAIGRIGRFLSGYR 403 (404)
T ss_pred EEEeC--CCHHHHHHHHHHHHHHHHHhc
Confidence 99996 689999999999999987654
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=246.14 Aligned_cols=336 Identities=15% Similarity=0.169 Sum_probs=232.5
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~~~v~~t~g~ 138 (458)
.+.+.|..+... +.|+.+.+++.+..... . ..++........+|+++|+++ |.+ ++++|++|+|+
T Consensus 33 ~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~--~------~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~ 104 (403)
T PRK08636 33 EDIIDFSMGNPDGPTPQHIIDKLCESAQKP--K------THGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGS 104 (403)
T ss_pred CCEEEcCCcCCCCCCCHHHHHHHHHHhcCC--c------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCCh
Confidence 556778776544 34666666665544321 0 011122334456777777776 543 32269999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHH----HHHhhc---CCc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDK----LKEMLS---RKT 209 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~----l~~~l~---~~~ 209 (458)
++++.+++.++ +++||.|++++|+|+. +...++..|++++.++++ +++.+|++. +++.++ .++
T Consensus 105 ~~al~~~~~~l----~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 176 (403)
T PRK08636 105 KEGYVHLVQAI----TNPGDVAIVPDPAYPI----HSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKP 176 (403)
T ss_pred HHHHHHHHHHh----CCCCCEEEEcCCCCcc----hHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCc
Confidence 99999999988 7899999999999994 455667779999999885 335778775 455554 467
Q ss_pred eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cC---CCCCC-CCcEEEecccCCCCCCc--
Q 012718 210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VV---DVQGL-DADFLVASSHKMCGPTG-- 276 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~---~~~~~-~~d~~~~s~~K~~gp~g-- 276 (458)
+++++++|+||||.+++ +++|+++|++|+++||+|++|+.-.. .. .++.. +..++++|+||.+|.+|
T Consensus 177 ~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 256 (403)
T PRK08636 177 KYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWR 256 (403)
T ss_pred eEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccce
Confidence 89999999999999999 57889999999999999999873211 11 12221 23456789999998777
Q ss_pred eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012718 277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYL 356 (458)
Q Consensus 277 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l 356 (458)
+||++.++++++.+...... ...+++...+..+. .+++.... .++++++.+++.++.+
T Consensus 257 iG~iv~~~~li~~~~~~~~~--------------------~~~~~~~~~q~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l 314 (403)
T PRK08636 257 VGFVVGNKKLVGALKKIKSW--------------------LDYGMFTPIQVAAT-IALDGDQS-CVEEIRETYRKRRDVL 314 (403)
T ss_pred eeeeeCCHHHHHHHHHHHHH--------------------hcccCChHHHHHHH-HHHhCcHH-HHHHHHHHHHHHHHHH
Confidence 99999998887766533210 01123333343332 33332112 2567788888889999
Q ss_pred HHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC----CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC
Q 012718 357 YENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN----IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH 432 (458)
Q Consensus 357 ~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~ 432 (458)
.+.|++. ++++..+. .+.++|++++. .+..++.+.+.++.||.+.+|..+.. ..++++||+++
T Consensus 315 ~~~L~~~-~~~~~~p~------~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~------~~~~~iRi~~~ 381 (403)
T PRK08636 315 IESFANA-GWELQKPR------ASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGE------YGDEYVRIALI 381 (403)
T ss_pred HHHHHHC-CCcccCCC------cceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCc------CCCCeEEEEec
Confidence 9999886 66654443 26689999874 24577887755434999999875421 11579999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 012718 433 FYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 433 ~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.+++++.+++|.++++..
T Consensus 382 --~~~~~l~~~~~rl~~~l~~~ 401 (403)
T PRK08636 382 --ENENRIRQAARNIKKFLKEL 401 (403)
T ss_pred --CCHHHHHHHHHHHHHHHHhh
Confidence 58899999999999998764
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=242.91 Aligned_cols=330 Identities=18% Similarity=0.221 Sum_probs=236.9
Q ss_pred CCCeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 65 SKKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 65 ~~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
+..++.|..+.+ + +.++.+.+++.++++.+.... ..+....+.....+++++.++++++.+ +.+++++| ++++
T Consensus 15 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~--~~~~~~~g~~~~~~~l~~~la~~~~~~--~~i~~~~G-~~~~ 89 (360)
T TIGR00858 15 GRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGS--TASRLVSGNSPLHEELEEELAEWKGTE--AALLFSSG-YLAN 89 (360)
T ss_pred CceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCC--CCcCcccCCcHHHHHHHHHHHHHhCCC--CEEEECch-HHHH
Confidence 456777777643 4 466889999999887632211 111111122455678999999999854 25666665 5566
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC----CceEEEEeccc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHIS 218 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~ 218 (458)
..++.++ +++||+|++++++|.+.. ..++..|++++.++. +|++.+++.++. ++++|++++++
T Consensus 90 ~~~l~~~----~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~ 156 (360)
T TIGR00858 90 VGVISAL----VGKGDLILSDALNHASLI----DGCRLSGARVRRYRH-----NDVEHLERLLEKNRGERRKLIVTDGVF 156 (360)
T ss_pred HHHHHHh----CCCCCEEEEEccccHHHH----HHHHhcCCceEEecC-----CCHHHHHHHHHHcccCCCeEEEEeCCc
Confidence 6666666 689999999999998653 334566888888774 388889888864 46899999999
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC---------CCCCCCcEEEecccCCCCCCceeEEEEecccccc
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD---------VQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~---------~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~ 289 (458)
|++|...|+++|.++|+++|+++|+|++|+.+..+.+ +...+.|++++|+||++|+.| ||++.++++++.
T Consensus 157 ~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g-G~~~~~~~~~~~ 235 (360)
T TIGR00858 157 SMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG-AYVAGSQALIDY 235 (360)
T ss_pred cCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC-cEEEcCHHHHHH
Confidence 9999999999999999999999999999986643221 222367999999999999877 899988877665
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
+......+ .+ .++.+..++.++.++++++.. .++..++++++++++.+.|+++ ++++.
T Consensus 236 ~~~~~~~~------------------~~-~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-~~~~~ 293 (360)
T TIGR00858 236 LINRARTL------------------IF-STALPPAVAAAALAALELIQE--EPWRREKLLALIARLRAGLEAL-GFTLM 293 (360)
T ss_pred HHHhCccc------------------ee-cCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHHc-CCccC
Confidence 53221100 01 123444556666777776654 3677899999999999999887 66654
Q ss_pred CCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
.+. ++++++.++. .+..++.+.|.++ ||.+.++..+..+ ...+++|++++.+++.+|+++++++|+
T Consensus 294 ~~~-------~~~~~~~~~~~~~~~~~~~~l~~~-gI~v~~~~~~~~~-----~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 294 PSC-------TPIVPVIIGDNASALALAEELQQQ-GIFVGAIRPPTVP-----AGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CCC-------CCEEEEEeCCHHHHHHHHHHHHHC-CeeEeeeCCCCCC-----CCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 222 6788888864 3466899999887 9999875432111 114589999999999999999998763
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=239.96 Aligned_cols=322 Identities=15% Similarity=0.150 Sum_probs=236.0
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
..++|+.+..+ ++|+.+.+++.+.......++.. ...++|+++|++++++++ +|++|+|+++++..+
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-----------~~~~Lr~~ia~~~~~~~~-~I~it~G~~~~l~~~ 100 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMREAAAEIWKYGDP-----------ENHDLRHALAAHHGVAPE-NIMVGEGIDGLLGLI 100 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC-----------ccHHHHHHHHHHhCCCHH-HEEEcCCHHHHHHHH
Confidence 34689988766 67888889888776543222211 145899999999998875 999999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc-CCceEEEEecccCcCccc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIHHISNMLASI 224 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~ 224 (458)
+.++ +++||.|++++|+|+.. ...++..|.+++.+|.+.++ +|++.+.+.+. .+++++++++|+||||.+
T Consensus 101 ~~~~----~~~gd~vlv~~p~y~~~----~~~~~~~g~~~~~vp~~~~~-~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~ 171 (369)
T PRK08153 101 VRLY----VEPGDPVVTSLGAYPTF----NYHVAGFGGRLVTVPYRDDR-EDLDALLDAARRENAPLVYLANPDNPMGSW 171 (369)
T ss_pred HHHh----cCCCCEEEECCCcchHH----HHHHHHcCCeEEEeeCCCCC-CCHHHHHHHhcccCCcEEEEeCCCCCCCCC
Confidence 9987 68999999999999943 44556679999999987664 68998877664 578999999999999999
Q ss_pred ccHHHHHHHHHh--cCcEEEEeccccCCcc---cCCCC-CCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcccc
Q 012718 225 LPIEEIVHWSHD--VGAKVLVDACQSVPHM---VVDVQ-GLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGG 296 (458)
Q Consensus 225 ~~l~~i~~l~~~--~~~~vivD~a~~~g~~---~~~~~-~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g 296 (458)
+|.+++.++++. ++++||+|++|..-.. ...+. .....+++.|+||.+|.+| +||+++++++++.+.....
T Consensus 172 ~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~- 250 (369)
T PRK08153 172 HPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRN- 250 (369)
T ss_pred CCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhc-
Confidence 997777666654 3899999999872211 11121 1234588889999998777 8999999887766543221
Q ss_pred CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc
Q 012718 297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH 376 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~ 376 (458)
..+.+...+.++..+++. .. -+++.++.+++.++++.+.|++. ++.+. +.
T Consensus 251 ----------------------~~~~s~~~q~~~~~~l~~-~~-~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~---- 300 (369)
T PRK08153 251 ----------------------HFGMNRIAQAAALAALKD-QA-YLAEVVGKIAAARDRIAAIARAN-GLTPL-PS---- 300 (369)
T ss_pred ----------------------CCCCCHHHHHHHHHHhcC-HH-HHHHHHHHHHHHHHHHHHHHHHC-CCccC-CC----
Confidence 112444455555555542 11 15667788888899999989876 66543 22
Q ss_pred CccccEEEEEeC--CCChHHHHHHHhhhcCeEec-cCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 377 VQRAALCSFNVE--NIHPTDIATLLDQQYGVATR-SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 377 ~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~-~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.++++++.++ .....++.+.|.++ ||.++ ++.. ..++++|++++ +.+|+++++++|++++..
T Consensus 301 --~~~f~~~~~~~~~~~a~~l~~~l~~~-Gi~v~~p~~~---------~~~~~iRis~~---~~~~~~~~~~al~~~~~~ 365 (369)
T PRK08153 301 --ATNFVAIDCGRDGAFARAVLDGLIAR-DIFVRMPGVA---------PLDRCIRVSCG---PDEELDLFAEALPEALEA 365 (369)
T ss_pred --cCcEEEEECCCCcccHHHHHHHHHHC-CeEEeeCCCC---------CCCCeEEEecC---CHHHHHHHHHHHHHHHHH
Confidence 1668888874 23467888888888 99995 4431 12569999988 689999999999999876
Q ss_pred hh
Q 012718 454 FN 455 (458)
Q Consensus 454 ~~ 455 (458)
.+
T Consensus 366 ~~ 367 (369)
T PRK08153 366 AR 367 (369)
T ss_pred hh
Confidence 54
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=244.71 Aligned_cols=336 Identities=16% Similarity=0.134 Sum_probs=238.9
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC--CcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS--GEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~~v~~t~g~t~a~ 142 (458)
.+++.|..|... +.++.+.+++.+.+.... + .+....+..+..+.+.+.+.+++|.+.+ ++|++|+|+++|+
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~----~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al 104 (386)
T PRK09082 30 HGAINLSQGFPDFDGPPYLVEALAYAMAAGH-N----QYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEAL 104 (386)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHcCC-C----CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHH
Confidence 567888887655 456778888877765321 1 0111112344445566666666776532 3799999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
.+++.++ +++||+|+++.|+|.+. ...++..|++++.++.++ ++.+|++++++.++++++++++++++|||
T Consensus 105 ~~~~~~~----~~~gd~Vli~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPt 176 (386)
T PRK09082 105 FAAILAL----VRPGDEVIVFDPSYDSY----APAIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPS 176 (386)
T ss_pred HHHHHHH----cCCCCEEEEeCCCchhh----HHHHHHcCCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCC
Confidence 9999987 68999999999999954 445566799999999874 57889999999998899999999999999
Q ss_pred ccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cC---CCCC-CCCcEEEecccCCCCCCc--eeEEEEeccccc
Q 012718 222 ASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VV---DVQG-LDADFLVASSHKMCGPTG--IGFLFGKSDLLS 288 (458)
Q Consensus 222 G~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~---~~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~ 288 (458)
|.+++ +++|.++|+++|+++|+|++|+.... .. .+.. .+..++++|+||.+|.+| +||+++++++++
T Consensus 177 G~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~ 256 (386)
T PRK09082 177 GTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSA 256 (386)
T ss_pred CcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHH
Confidence 99976 77889999999999999999873221 11 1222 246789999999998777 899999988876
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+..... ....+.+.....++...++.. ...++++++.++++++++.+.|++. ++++
T Consensus 257 ~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~ 313 (386)
T PRK09082 257 EFRKVHQ---------------------YNTFTVNTPAQLALADYLRAE-PEHYLELPAFYQAKRDRFRAALANS-RFKL 313 (386)
T ss_pred HHHHHHh---------------------hhcCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhC-CCcc
Confidence 6654321 011123333444444444321 1225667788889999999999885 6766
Q ss_pred eCCCCCCcCccccEEEEEeC---CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVE---NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
..+. .+.++|++++ +.+..++.+.|.+++||.+.+|..+... . ...+++|++++. +++++++.++
T Consensus 314 ~~~~------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~---~-~~~~~~Ri~~~~--~~~~l~~~~~ 381 (386)
T PRK09082 314 LPCE------GTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYAD---P-FPHRLVRLCFAK--QEETLDAAAE 381 (386)
T ss_pred cCCC------eeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCC---C-CCCCEEEEEecC--CHHHHHHHHH
Confidence 5443 1457888876 4567889898765559999998743210 0 125799999994 7888988888
Q ss_pred HHHH
Q 012718 446 ALNE 449 (458)
Q Consensus 446 ~l~~ 449 (458)
+|.+
T Consensus 382 rl~~ 385 (386)
T PRK09082 382 RLCQ 385 (386)
T ss_pred HHhh
Confidence 8764
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=243.30 Aligned_cols=282 Identities=15% Similarity=0.174 Sum_probs=211.3
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCC-CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC
Q 012718 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND 192 (458)
Q Consensus 114 ~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~ 192 (458)
.++++.+++++|++++ +|++|+|+++++.+++.++ +++| +.|+++.|+|. .+...++..|++++.++.++
T Consensus 60 ~~l~~~~a~~~g~~~~-~I~~~~Gs~e~i~~~~~~~----~~~g~~~vli~~P~y~----~y~~~~~~~G~~~~~v~~~~ 130 (351)
T PRK01688 60 KAVIENYAAYAGVKPE-QVLVSRGADEGIELLIRAF----CEPGKDAILYCPPTYG----MYSVSAETIGVEIRTVPTLD 130 (351)
T ss_pred HHHHHHHHHHhCCCHH-HEEEcCCHHHHHHHHHHHh----cCCCCCEEEEcCCCHH----HHHHHHHHcCCEEEEeecCC
Confidence 4788999999999876 9999999999999999987 6776 89999999998 56777888899999999988
Q ss_pred CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh--cCcEEEEeccccCCccc---CC-CCCCCCcEEEe
Q 012718 193 DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMV---VD-VQGLDADFLVA 266 (458)
Q Consensus 193 ~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~---~~-~~~~~~d~~~~ 266 (458)
++.+|++++++.+ +++++|++++|+||||.+++.+++.++++. .+++||+|++|.--... .+ +...+..+++.
T Consensus 131 ~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~r 209 (351)
T PRK01688 131 NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILR 209 (351)
T ss_pred CCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEe
Confidence 8889999999888 588999999999999999997776666543 26899999998632211 11 12334678888
Q ss_pred cccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 267 SSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 267 s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
|+||.+|.+| +|++++++++++.+......| ..+.....++.++|+.....-+.+
T Consensus 210 SfSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~-----------------------~v~~~~~~~a~~~L~~~~~~~~~~ 266 (351)
T PRK01688 210 TLSKAFALAGLRCGFTLANEEVINLLLKVIAPY-----------------------PLSTPVADIAAQALSPQGIAAMRE 266 (351)
T ss_pred cchHhhcCHHHHHhHHhCCHHHHHHHHhccCCC-----------------------CCCHHHHHHHHHHHhcchHHHHHH
Confidence 9999999888 799999998877666433211 122222222223333110011445
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 345 IHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
..+.+.+.++++.+.|+++++++...+.. +++++++++ +..++.+.|.++ ||.++.+..+ .|.+
T Consensus 267 ~~~~~~~~r~~l~~~L~~~~~~~~~~ps~------~nfi~~~~~--~~~~l~~~L~~~-gi~vr~~~~~-------~~~~ 330 (351)
T PRK01688 267 RVAEINANRQWLIAALKEIPCVEQVFDSE------TNYILARFT--ASSAVFKSLWDQ-GIILRDQNKQ-------PGLS 330 (351)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeECCCC------CcEEEEEcC--CHHHHHHHHHHC-CeEEEECCCc-------CCCC
Confidence 55666777889999998887764333331 678888876 467899999988 9999865422 1346
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHH
Q 012718 425 ASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l 447 (458)
+++|||++ +.+|+++++++|
T Consensus 331 ~~iRis~~---~~~e~~~l~~al 350 (351)
T PRK01688 331 NCLRITIG---TREECQRVIDAL 350 (351)
T ss_pred CeEEEeCC---CHHHHHHHHHhh
Confidence 79999999 679999999887
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=241.81 Aligned_cols=324 Identities=18% Similarity=0.266 Sum_probs=227.2
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhH----HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAK----ATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
-||+.+..+++.+++.+++.++.... |+.+.+..+.. ..+.++++++.+|+++|++. .+++++|. .++..
T Consensus 13 ~YL~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~--~l~~~sG~-~a~~~ 86 (370)
T PRK05937 13 DFLGFSRSDTLVHEVEKRYRLYCRQF---PHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE--AFIVPSGY-MANLG 86 (370)
T ss_pred CccCCCCCHHHHHHHHHHHHHhcccc---CCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe--EEEECChH-HHHHH
Confidence 35666666666666666666654332 32233444444 67889999999999999962 45555554 56655
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEeccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHIS 218 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~ 218 (458)
++..+ .+++|.|++....|.++..++... .|.. +.++ ..|++++++.++. ++.+|++++++
T Consensus 87 ~~~~~----~~~~d~ii~d~~~H~sv~~~~~~~---~~~~-~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~ 153 (370)
T PRK05937 87 LCAHL----SSVTDYVLWDEQVHISVVYSLSVI---SGWH-QSFR-----HNDLDHLESLLESCRQRSFGRIFIFVCSVY 153 (370)
T ss_pred HHHHh----CCCCCEEEEEhhhhHHHHHHHHHc---CCce-EEec-----CCCHHHHHHHHHhhhccCCCcEEEEEecCC
Confidence 55544 357888888899998877665442 2333 3333 3488999998862 45678899999
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCC----CCC---CcEEEecccCCCCCCceeEEEEeccccccCC
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ----GLD---ADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~----~~~---~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~ 291 (458)
|++|.+.|+++|.++|+++|+++++|++|+.|.++.+.. .++ .++++.|++|.+|+.|+|+++.++ ....+.
T Consensus 154 s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~~vl~~~~-~~~~~~ 232 (370)
T PRK05937 154 SFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGAALLSSSE-VKQDLM 232 (370)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCceEEEcCHH-HHHHHH
Confidence 999999999999999999999999999999988766542 222 246778999999999988776543 322211
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
... .+.++.. +.+...++++.++++++.+.+ +..+++++++.+++.+.|... + +
T Consensus 233 ~~~------------------~~~~~s~-~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~-~-----~ 286 (370)
T PRK05937 233 LNS------------------PPLRYST-GLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSA-A-----P 286 (370)
T ss_pred HhC------------------CCCeecC-CCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCC-C-----C
Confidence 000 0122333 356667888899999998776 567788999999998887542 0 1
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+.+..+.+++....++.+.|.++ ||.+... |.+ ..+.+|+|++.++|++||+++++.|++++
T Consensus 287 --------~~~~~i~~~~~~~~~~~~~L~~~-gi~v~~~--~~~-------~~~~iRis~~~~~t~edid~l~~~L~~~~ 348 (370)
T PRK05937 287 --------GCVQPIFLPGISEQELYSKLVET-GIRVGVV--CFP-------TGPFLRVNLHAFNTEDEVDILVSVLATYL 348 (370)
T ss_pred --------CCEEEEEeCChhHHHHHHHHHHC-CeeEEee--CCC-------CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 22233556665667888888888 9988632 311 14589999999999999999999999999
Q ss_pred Hhhhc
Q 012718 452 SFFNV 456 (458)
Q Consensus 452 ~~~~~ 456 (458)
+++.+
T Consensus 349 ~~~~~ 353 (370)
T PRK05937 349 EKYQK 353 (370)
T ss_pred HHhCC
Confidence 87644
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=239.13 Aligned_cols=316 Identities=16% Similarity=0.184 Sum_probs=228.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+++.|+.+... .+|+.+.+++.+.+.....++. ....++|++++++++++++ +|++|+|+++++.+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----------~~~~~lr~~ia~~~~~~~~-~I~it~G~~~al~~ 97 (357)
T PRK14809 30 DDLVKLSSNENPHGPSPAAVEAIREAAERVHSYPK-----------ASHADLTAALADRWDVSPE-QVWLANGGDGALDY 97 (357)
T ss_pred cceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCCC-----------CCHHHHHHHHHHHhCCCcc-eEEECCCHHHHHHH
Confidence 568999988665 5677888888877654322221 1245799999999999876 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
++.++ +++||.|++++|+|. .+...+...|++++.++++. +..+|++.+++.. ++++++++++++||||
T Consensus 98 ~~~~~----~~~gd~V~v~~P~y~----~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG 168 (357)
T PRK14809 98 LARAM----LDPGDTVLVPDPGFA----YYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTG 168 (357)
T ss_pred HHHHh----cCCCCEEEEeCCChH----HHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCC
Confidence 99987 789999999999987 33445666799999998864 3566777777665 4678999999999999
Q ss_pred ccccHHHHHHHHHh--cCcEEEEeccccCCcc---cCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcc
Q 012718 223 SILPIEEIVHWSHD--VGAKVLVDACQSVPHM---VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 223 ~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~---~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~ 294 (458)
.++|.+++.++++. ++++||+|++|..-.. .+. +...+..+++.|+||.+|.+| +||+++++++++.+....
T Consensus 169 ~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~ 248 (357)
T PRK14809 169 SEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVN 248 (357)
T ss_pred cCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHhC
Confidence 99997777666654 3789999999973211 111 122235688899999999777 999999988777665322
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
. ....+.....++..++.. ..-+++.++.+++.++++.+.|... . . +.
T Consensus 249 ~-----------------------~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-~---~-~~-- 296 (357)
T PRK14809 249 T-----------------------PFAASELACRAGLAALDD--DEHVERTVETARWAREYIREELDAP-T---W-ES-- 296 (357)
T ss_pred C-----------------------CCCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHhcCc-c---C-CC--
Confidence 1 012232222333333321 1114566677777788888888643 1 1 22
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
.+.+++++++ +..++.+.+.++ ||.+++|..+ +.++++|++++ +.+++++++++|+++++
T Consensus 297 ----~g~f~~~~~~--~~~~~~~~l~~~-gv~v~~g~~f--------~~~~~iRls~~---~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 297 ----AGNFVLAEVG--DASAVAEAAQER-GVIVRDCTSF--------GLPECIRITCG---TREETERAVEVLNEVLA 356 (357)
T ss_pred ----CCCEEEEECC--CHHHHHHHHHHC-CEEEEECccC--------CCCCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence 1678888885 467888988877 9999998744 33579999987 57899999999998764
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=238.26 Aligned_cols=322 Identities=16% Similarity=0.152 Sum_probs=232.4
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+.+.|+.+... ++|+.+.+++.+.+.....++. .. ..++|+++|++++++++ +|++|+|+++++.+
T Consensus 22 ~~~i~l~~~~n~~~~~~~~~~a~~~~~~~~~~Y~~----------~~-~~~Lr~aia~~~~v~~~-~I~it~G~~~~i~~ 89 (360)
T PRK07392 22 DAILDFSASINPLGPPESVIAAIQSALSALRHYPD----------PD-YRELRLALAQHHQLPPE-WILPGNGAAELLTW 89 (360)
T ss_pred ccEEEeCCcCCCCCCCHHHHHHHHHHHHHhhcCCC----------cC-HHHHHHHHHHHhCcChh-hEEECCCHHHHHHH
Confidence 467889987555 6788888888877654322221 11 34899999999999876 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCC-----CCHHHHHHhhcCCceEEEEecccC
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDES-----PDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
++.++ .+|+.|++++|+|. .+...++..|++++.++.++++. .+++.+++.. .+++++++++|+|
T Consensus 90 ~~~~l-----~~g~~vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~N 159 (360)
T PRK07392 90 AGREL-----AQLRAVYLITPAFG----DYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHN 159 (360)
T ss_pred HHHHh-----CCCCeEEEECCCcH----HHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCC
Confidence 99876 35789999999999 55777788899999999976543 3566666543 4679999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcc-----c-CC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccC
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----V-VD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAM 290 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~-~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l 290 (458)
|||.+++.++|.++++++++ +|+|++|.--.. + +. +......+++.|+||.||.+| +||+++++++++.+
T Consensus 160 PTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~ 238 (360)
T PRK07392 160 PTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRW 238 (360)
T ss_pred CCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHH
Confidence 99999999999999999985 666999872211 0 11 222335688899999999777 99999988877665
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYG 370 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 370 (458)
..... ..+.+.....++..+++.- .. .+...+.+++.++++.+.|++++++.+..
T Consensus 239 ~~~~~-----------------------~~~~s~~~q~~~~~~l~~~-~~-~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ 293 (360)
T PRK07392 239 QQWRD-----------------------PWPVNGLAAAAAIAALADR-DF-QQQTWAWLPPAREALFQGLASLPGLTPLP 293 (360)
T ss_pred HhhCC-----------------------CCCCCHHHHHHHHHHhccH-HH-HHHHHHHHHHHHHHHHHHHHhCCCcEECC
Confidence 42211 1234444445555555421 11 34455677888899999998888877643
Q ss_pred CCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
. . +.+++++++. +..++.+.+.++.||.+++|..+.. ..++++||+++ +.++.+++.+.|+++
T Consensus 294 -~-~-----~~fl~~~~~~-~~~~l~~~ll~~~gv~v~pg~~f~~------~~~~~iRi~~~---~~~~~~~l~~al~~~ 356 (360)
T PRK07392 294 -S-A-----ANFLLVQSQG-SALQLQEKLLQQHRILIRDCLSFPE------LGDRYFRVAVR---TEAENQRLLEALAAI 356 (360)
T ss_pred -C-C-----CCEEEEEcCC-CHHHHHHHHHhhCCEEEEeCCCCCC------CCCCEEEEEeC---CHHHHHHHHHHHHHH
Confidence 2 1 6688888765 5677887765444999999875421 12579999998 456677888888776
Q ss_pred HH
Q 012718 451 VS 452 (458)
Q Consensus 451 ~~ 452 (458)
++
T Consensus 357 ~~ 358 (360)
T PRK07392 357 LA 358 (360)
T ss_pred hh
Confidence 54
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=239.80 Aligned_cols=336 Identities=18% Similarity=0.201 Sum_probs=237.4
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g~ 138 (458)
++.+.|+.+... ++|+.+.+++.+.+.....+.. .+........+|+.++++++ +++ ++|++|+|+
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~t~G~ 105 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLH------GYMPNAGYPEVREAIAESLNRRFGTPLTA-DHIVMTCGA 105 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcc------cCCCCCCCHHHHHHHHHHHHHHhCCCCCc-CcEEEeCCh
Confidence 566888777654 5678888888877654211111 11122345578888888875 344 489999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
++++..++.++ +++||.|++++|+|.. +..+++..|++++.++.+++ +.+|++++++.+++++++++++++
T Consensus 106 ~~al~~~~~~l----~~~gd~Vli~~p~~~~----~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p 177 (394)
T PRK06836 106 AGALNVALKAI----LNPGDEVIVFAPYFVE----YRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSP 177 (394)
T ss_pred HHHHHHHHHHh----cCCCCEEEEcCCCCcc----HHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCC
Confidence 99999999988 6899999999999985 45566778999999999876 678999999999889999999999
Q ss_pred cCcCccccc---HHHHHHHHHh------cCcEEEEeccccCCc----ccCC-CCCCCCcEEEecccCCCCCCc--eeEEE
Q 012718 218 SNMLASILP---IEEIVHWSHD------VGAKVLVDACQSVPH----MVVD-VQGLDADFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~------~~~~vivD~a~~~g~----~~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~ 281 (458)
+||||.++| +++|+++|++ ||++||+|++|..-. .... ....+..++++|++|.+|.+| +||++
T Consensus 178 ~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~ 257 (394)
T PRK06836 178 NNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIA 257 (394)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEe
Confidence 999999999 6678888888 899999999987221 1111 223346789999999998666 99999
Q ss_pred EeccccccCCCccccCcceEeeecCCCCCCCCCCccC-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 012718 282 GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFE-AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360 (458)
Q Consensus 282 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L 360 (458)
++++..+... ........ .+.. ....+.....++...++ + + ...+.+++.++.+.+.|
T Consensus 258 ~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~~~~~q~~~~~~l~---~-~--~~~~~~~~~r~~l~~~L 316 (394)
T PRK06836 258 VNPEMEDADD-LVAALVFA--------------NRILGFVNAPALMQRVVAKCLD---A-T--VDVSIYKRNRDLLYDGL 316 (394)
T ss_pred cCHHHhhhHH-HHHHHHHH--------------hhccccccCCHHHHHHHHHHhC---C-h--HHHHHHHHHHHHHHHHH
Confidence 9876532210 11000000 0000 01122222333332222 2 1 12455667788888888
Q ss_pred hcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 361 LSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
+++ ++++..+. .+.++|++++..+..++++.|.+. ||.+.+|..+ +.++++||+++ .+++++
T Consensus 317 ~~~-g~~~~~~~------gg~~~~~~~~~~~~~~~~~~l~~~-gv~v~~g~~f--------~~~~~iRi~~~--~~~~~~ 378 (394)
T PRK06836 317 TEL-GFECVKPQ------GAFYLFPKSPEEDDVAFCEKAKKH-NLLLVPGSGF--------GCPGYFRLSYC--VDTETI 378 (394)
T ss_pred HhC-CCEeecCC------ceEEEEEeCCCCCHHHHHHHHHhC-CEEEECchhc--------CCCCeEEEEec--CCHHHH
Confidence 887 77765443 155788888766778888888877 9999998744 23579999998 588999
Q ss_pred HHHHHHHHHHHHhhh
Q 012718 441 DEFIHALNETVSFFN 455 (458)
Q Consensus 441 ~~l~~~l~~~~~~~~ 455 (458)
++.+++|++++++.+
T Consensus 379 ~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 379 ERSLPAFEKLAKEYK 393 (394)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987643
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=238.08 Aligned_cols=321 Identities=17% Similarity=0.207 Sum_probs=238.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL 154 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~ 154 (458)
+.+++|+++.+++.++...+. ...+..+++++.+++++|.+ ++++|+|+|.|+.+++.++ +
T Consensus 21 g~s~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~~~~a~~~g~~---~~~~~~g~t~al~~al~al----~ 81 (363)
T TIGR01437 21 GVSTVSDEVADAQKRGAQNYF------------EIKELVNKTGEYIANLLGVE---DAVIVSSASAGIAQSVAAV----I 81 (363)
T ss_pred CCCCCCHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHHhhCCC---eEEEEcCHHHHHHHHHHHH----h
Confidence 555799999999999865320 13566788999999999986 7899999999999999988 6
Q ss_pred CCCC---------------EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEE-Eeccc
Q 012718 155 KSGD---------------EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV-IHHIS 218 (458)
Q Consensus 155 ~~g~---------------~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~-~~~~~ 218 (458)
++|| +|+++.+.|.....++.......|++++.++. ++.+|++++++++++++++++ +++++
T Consensus 82 ~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~ai~~v~~~~ 159 (363)
T TIGR01437 82 TRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKTAAILYIKSHH 159 (363)
T ss_pred cCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhceEEEEEecCC
Confidence 6777 88888855543222345556777999999976 456899999999999998666 67778
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccC
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGG 297 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~ 297 (458)
|++|.+.|+++|+++||++|+++|+|++|+.... ...+++.|++++|+|| +.||. +|+++.+++.++.+.+...+.
T Consensus 160 ~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~--~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~~~~i~~~~~~~~~~ 236 (363)
T TIGR01437 160 CVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ--KYYRLGADLVIYSGAKAIEGPT-SGLVLGKKKYIEWVKLQSKGI 236 (363)
T ss_pred CCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchH--HHHHcCCCEEEEeCCcccCCCc-eEEEEEcHHHHHHHHhccCCC
Confidence 9999999999999999999999999999983211 1224578999999999 66777 799998877776654332221
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcC
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHV 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~ 377 (458)
+ ..++.++. .++++.++++++...+.+.+.++.+ .++++.+.|++++++++..+.+....
T Consensus 237 ~----------------~~~~~~~~---~~~gl~aAl~~~~~~~~~~~~~~~~-~~~~l~~~L~~i~g~~~~~~~~~~~~ 296 (363)
T TIGR01437 237 G----------------RAMKVGKE---NILGLTAALEQYLSTGKESGAEMVA-KLTPFIEALNTLKGVSASIVQDEAGR 296 (363)
T ss_pred c----------------ceeccCHH---HHHHHHHHHHHHHccCcccHHHHHH-HHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 1 23334443 3688888999887766666665554 56689999999999998754321000
Q ss_pred c-cccEEEEEeC--CCChHHHHHHHhhhcC--eEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 378 Q-RAALCSFNVE--NIHPTDIATLLDQQYG--VATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 378 ~-~~~~v~~~~~--~~~~~~~~~~l~~~~g--i~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
. ....+.|... +.+..++.+.|.+. + |.+++ + +...+.+|+++.. ++++|++.++++|++++
T Consensus 297 ~~~~~~v~~~~~~~g~~~~~l~~~L~~~-~~~I~~r~--~--------~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 297 DIARAEIRFDESELGMTAADVVQALRQG-EPAIYTRG--Y--------KANEGIIEIDPRS-VTGGQLDIIVERIREIV 363 (363)
T ss_pred cCceEEEEEeccCCCCCHHHHHHHHhcC-CCCEEEee--e--------eecCCeEEEEeec-CCHHHHHHHHHHHHHhC
Confidence 0 0123555552 67889999999875 6 77664 1 2236789999986 67999999999998764
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=241.48 Aligned_cols=332 Identities=19% Similarity=0.237 Sum_probs=237.6
Q ss_pred CCCeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 65 SKKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 65 ~~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
++.++.|..+.. + ..++.+.+++.+++..+..+. +.+..........+++++.++++++.+ +.++++++++++
T Consensus 38 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~--~~~~~~~g~~~~~~~l~~~la~~~~~~---~~i~~~~g~~~~ 112 (385)
T PRK05958 38 GRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGS--GGSRLVTGNSPAHEALEEELAEWFGAE---RALLFSSGYAAN 112 (385)
T ss_pred CceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCC--CCcCcccCCcHHHHHHHHHHHHHhCCC---cEEEECcHHHHH
Confidence 466676766532 4 367889999999987643211 111111122455778999999999853 455556667777
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEecccC
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISN 219 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n 219 (458)
..++..+ +++||.|+++++.|++... .++..|++++.++.. |++.+++.+++ .+.+++++++.|
T Consensus 113 ~~~l~~~----~~~gd~V~~~~~~~~~~~~----~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~~~~~lvi~~~~~~ 179 (385)
T PRK05958 113 LAVLTAL----AGKGDLIVSDKLNHASLID----GARLSRARVRRYPHN-----DVDALEALLAKWRAGRALIVTESVFS 179 (385)
T ss_pred HHHHHHh----CCCCCEEEEeCccCHHHHH----HHHhcCCceEEeCCC-----CHHHHHHHHHhccCCCeEEEEEeccc
Confidence 7776666 7899999999999986543 345568888888753 88899998865 367888889999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcccC---------CCCCCCCcEEEecccCCCCCCceeEEEEeccccccC
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---------DVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM 290 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l 290 (458)
++|...++++|.++|+++|+++|+|++|+.+.... .+.....++++.|+||++|+.| |+++.++++.+.+
T Consensus 180 ~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-g~~~~~~~~~~~~ 258 (385)
T PRK05958 180 MDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG-AAVLGSETLIDYL 258 (385)
T ss_pred CCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC-cEEEcCHHHHHHH
Confidence 99999999999999999999999999998654321 2323335688999999888876 8888887665443
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccC-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFE-AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
..... .+. .+.++..+..++.++++.+... +.+.+++.++.+++.+.|+++ ++++.
T Consensus 259 ~~~~~--------------------~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-~~~~~ 315 (385)
T PRK05958 259 INRAR--------------------PFIFTTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRAL-GFQLM 315 (385)
T ss_pred HHhCc--------------------cceecCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCcC
Confidence 21110 011 2335556666777788877653 677889999999999999887 56543
Q ss_pred CCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
.+. +++++|.+++ .+..++.+.|.++ ||.+.++.....+ ..++++||+++.+++++|++++++.|+
T Consensus 316 ~~~-------~~~~~~~~~~~~~~~~~~~~l~~~-gI~v~~~~~~~~~-----~~~~~lRis~~~~~~~~~i~~~l~~l~ 382 (385)
T PRK05958 316 DSQ-------SAIQPLIVGDNERALALAAALQEQ-GFWVGAIRPPTVP-----AGTSRLRITLTAAHTEADIDRLLEALA 382 (385)
T ss_pred CCC-------CCEEEEEeCCHHHHHHHHHHHHHC-CceEecccCCCCC-----CCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 322 6788888864 3456899999887 9999864322111 114689999999999999999999998
Q ss_pred HHH
Q 012718 449 ETV 451 (458)
Q Consensus 449 ~~~ 451 (458)
+++
T Consensus 383 ~~~ 385 (385)
T PRK05958 383 EAL 385 (385)
T ss_pred hcC
Confidence 753
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=231.13 Aligned_cols=337 Identities=20% Similarity=0.196 Sum_probs=246.6
Q ss_pred ecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCChhHHHHHHHH
Q 012718 71 LDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 71 l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~~v~~t~g~t~a~~~~~~ 147 (458)
|..|-+. ++|+.+.+++.+....... ..+..+++..++.+.+++++++++|.. ++++|++|.|+.+++..++.
T Consensus 36 LgqGfp~~~~P~fv~ea~~~~~~~~~~----~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~ 111 (420)
T KOG0257|consen 36 LGQGFPDFPPPKFVTEAAKNAAKEPST----NQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALL 111 (420)
T ss_pred ccCCCCCCCCcHHHHHHHHHHhccchh----ccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHH
Confidence 7777666 8899999999998876422 344556677888889999999988764 44589999999999999998
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--------CCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--------DDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--------~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
++ +++||+|++.+|.|.+ +....+..|.+++.|+.. .++.+|.+.++.++.++|++|++++|+|
T Consensus 112 ~l----~~~GDeVii~eP~fd~----Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhN 183 (420)
T KOG0257|consen 112 GL----LNPGDEVIVFEPFFDC----YIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHN 183 (420)
T ss_pred HH----cCCCCEEEEecCcchh----hhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCC
Confidence 88 8999999999999984 444556779999999876 3478999999999999999999999999
Q ss_pred cCccccc---HHHHHHHHHhcCcEEEEeccccC----Cc--ccC--CCCCCCCcEEEecccCCCCCCc--eeEEEEeccc
Q 012718 220 MLASILP---IEEIVHWSHDVGAKVLVDACQSV----PH--MVV--DVQGLDADFLVASSHKMCGPTG--IGFLFGKSDL 286 (458)
Q Consensus 220 ~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~----g~--~~~--~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~ 286 (458)
|||.+++ ++.|+++|++||+++|.|++|.. |. ..+ ....++..+.++|++|.||.+| +||++.++.+
T Consensus 184 PtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L 263 (420)
T KOG0257|consen 184 PTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHL 263 (420)
T ss_pred CcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHh
Confidence 9999999 88999999999999999999983 22 111 1233457899999999999999 9999997666
Q ss_pred cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-H-Hh--C-HHHHHHHHHHHHHHHHHHHh
Q 012718 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-S-TI--G-MQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~-~~--g-~~~~~~~~~~l~~~l~~~L~ 361 (458)
+..+.+..... .|...|+-. ...+...++++. . -. . +..+.+.+++.++.|.+.|.
T Consensus 264 ~~~~~~vh~~~------------------~~~~~Tp~q-~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~ 324 (420)
T KOG0257|consen 264 YSALFPVHQNF------------------VFTCPTPIQ-EASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALE 324 (420)
T ss_pred hhhHHHHhhcc------------------ccccCcHHH-HHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 66555443211 122222221 111111222221 1 11 1 33478889999999999999
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeCC-------------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEE
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVEN-------------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR 428 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lR 428 (458)
++ |+++..+.. +.+++..++. .+...++.++.++.|+.+-|++.+....+.... .+.+|
T Consensus 325 ~l-g~~v~~p~g------ayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~-~~~~r 396 (420)
T KOG0257|consen 325 EL-GLKVTGPEG------AYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVA-ERLVR 396 (420)
T ss_pred hc-CCccccCCC------ceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHH-HHHHH
Confidence 99 999988873 5577777651 123457778877779988887755443333222 55777
Q ss_pred EeeCCCCCHHHHHHHHHHHH
Q 012718 429 ASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 429 is~~~~~t~~di~~l~~~l~ 448 (458)
+++. -+.+-++...+.|+
T Consensus 397 ~~~~--k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 397 FCFC--KADETLRKAIERLK 414 (420)
T ss_pred HHHH--hhHHHHHHHHHHHh
Confidence 7776 46666666666655
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=234.11 Aligned_cols=348 Identities=17% Similarity=0.209 Sum_probs=263.6
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccC-CC-CCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCChhHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSN-VH-RGIHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAINL 144 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~-t~g~t~a~~~ 144 (458)
.+|+=..++...|+.|++++.+-+.++... .. ....+++..+.+.++++++.|.++++.+.+++|+| ++|||.++..
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea 86 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAA 86 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHH
Confidence 356667778889999999998876553321 11 13455677889999999999999999875556654 5899999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCC---CCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE---SPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~---~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
++..+ +.+|+++++...+..+. .|.+.|++.|...+.....+.. .+++++++ .+++.+.|.+++..+.|
T Consensus 87 ~~~nl----~~~~~~~l~~~~G~fg~--r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~hnETst 158 (365)
T PLN02452 87 IPLNL----CKPGDKADFVVTGSWSK--KAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWE--LTPDAKFVHICANETIH 158 (365)
T ss_pred HHHhc----CCCCCeEEEEECCHHHH--HHHHHHHHhCCCcEEEecCCCCCCCCCChHHcC--CCCCCcEEEECCCCCCC
Confidence 99998 67889999888888877 5677888888754444322222 35666652 24567999999999999
Q ss_pred ccc-ccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcce
Q 012718 222 ASI-LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMI 300 (458)
Q Consensus 222 G~~-~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~ 300 (458)
|.. .|++++. ++++++|+++++|..|++++++++|+ +|.||.+||+|+|++++++++++++.+....
T Consensus 159 Gv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~--~saqK~lGP~Gl~~v~vr~~~l~~~~~~~~~---- 226 (365)
T PLN02452 159 GVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYGVIY--AGAQKNVGPSGVTIVIIRKDLIGNARPITPG---- 226 (365)
T ss_pred cEecCcccccC------CCeEEEECCccccCcccCHHHcCEEE--EecccccCCCCeEEEEEcHHHHhhcccCCCc----
Confidence 995 7777664 38999999999999999999988766 5999988999999999999998776543221
Q ss_pred EeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcc
Q 012718 301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQR 379 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~ 379 (458)
+.+...+.. .....+||+...++++..+++++.+. |++.+.++.+++++++++.|++.+|+ +.+......++
T Consensus 227 ---~~~~~~~~~--~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~--y~~~~~~~~rs 299 (365)
T PLN02452 227 ---MLDYKIHAE--NDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF--YVCPVEKSVRS 299 (365)
T ss_pred ---hhhHHHHHh--cCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc--ccCCCChHHhC
Confidence 111110000 11224799999999999999999986 89999999999999999999988777 22211100233
Q ss_pred ccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 380 AALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 380 ~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
..+++|.+++. ..+++.+.+.++ |+..-+|+.. -+.+|+|+-...+.+++++|++.++++-++
T Consensus 300 ~~~vsF~~~~~~~~~~f~~~~~~~-g~~~~~G~r~----------~gg~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 300 LMNVPFTLGGSELEAEFVKEAAKA-GMVQLKGHRS----------VGGMRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred CeEEEEEcCCchhHHHHHHHHHHC-CCcccCCccc----------cCceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 45899998864 467888999988 9998887622 234999998778999999999999988764
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=220.56 Aligned_cols=327 Identities=17% Similarity=0.219 Sum_probs=255.0
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC-CCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-SGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
+.|+.+.+++.+.++. |.+.+.....+..+.+.+..++..+... ++.|+|++|.-.++.+++++| .++
T Consensus 38 ~~pp~i~~Al~~rvdh-------GvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~----T~~ 106 (388)
T COG1168 38 PTPPEIIEALRERVDH-------GVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRAL----TKP 106 (388)
T ss_pred CCCHHHHHHHHHHHhc-------CCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHh----CcC
Confidence 4788899999998875 3333334456677788888888877652 248999999999999999999 799
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CC--CCCCHHHHHHhhcC-CceEEEEecccCcCccccc---HHH
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DD--ESPDLDKLKEMLSR-KTKLVVIHHISNMLASILP---IEE 229 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~--~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~---l~~ 229 (458)
||.|++..|.|+ +|....+..|.++...|+. ++ +.+|.++|++.+.+ +++++++++|+||||.+.. ++.
T Consensus 107 gd~Vvi~tPvY~----PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~ 182 (388)
T COG1168 107 GDGVVIQTPVYP----PFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRK 182 (388)
T ss_pred CCeeEecCCCch----HHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHH
Confidence 999999999999 7788888889999999987 34 46799999998876 5699999999999999998 778
Q ss_pred HHHHHHhcCcEEEEecccc----CCcc--cCC-CCC--CCCcEEEecccCCCCCCc--eeEEEEecccc-ccCCCccccC
Q 012718 230 IVHWSHDVGAKVLVDACQS----VPHM--VVD-VQG--LDADFLVASSHKMCGPTG--IGFLFGKSDLL-SAMPPFLGGG 297 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~----~g~~--~~~-~~~--~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~-~~l~~~~~g~ 297 (458)
|.++|++||+.||.|++|+ .|.. ++. ++. .+..+++.|.+|.|+..| ++.++.+++.. .+......
T Consensus 183 i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~-- 260 (388)
T COG1168 183 IAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLK-- 260 (388)
T ss_pred HHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHH--
Confidence 9999999999999999998 2322 221 222 235677889999999888 77777766432 22211110
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCCCc
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IPNIRIYGPKPSEH 376 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~ 376 (458)
+...+.+|..++.+..++.+.=..+ ++++.++++.+.+++.+.|.+ +|++++..|..
T Consensus 261 ------------------~~~~~~~n~lg~~A~~aAY~~G~~W-Ld~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~g--- 318 (388)
T COG1168 261 ------------------RNGLHGPSALGIIATEAAYNQGEPW-LDELLEYLKDNRDYVADFLNKHLPGVKVTEPQG--- 318 (388)
T ss_pred ------------------HhcCCCCchHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCC---
Confidence 1223568888888888887766665 889999999999999999975 58999998872
Q ss_pred CccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 377 VQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 377 ~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
...+|+.+. +.+..++.+.+.++.+|.+.+|.-+.. +..+++|+.++ .+.+-+++.+++|..+++..
T Consensus 319 ---TYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~------~g~gf~RlN~a--cpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 319 ---TYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGE------EGSGFVRLNFA--CPRAILEEALERLKRALKKR 387 (388)
T ss_pred ---ceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCc------CCCceEEEecC--CCHHHHHHHHHHHHHHHhcc
Confidence 336677775 566678999888777999999984422 22689999999 68899999999999887653
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=247.42 Aligned_cols=342 Identities=13% Similarity=0.146 Sum_probs=232.4
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhcc---CCCCCcchhhhHHHHHHHHHHHHHHHHcC--------CCCCCcEEE
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNS---NVHRGIHFLSAKATDEYELARKKVAAFIN--------ASDSGEIVF 134 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~~v~~ 134 (458)
.++|.|+.+.+..+-+.+.+.+.+....... ..........+....+..++|+++|++++ ++++ +|++
T Consensus 46 ~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe-~Ivi 124 (496)
T PLN02376 46 HGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE-RVVM 124 (496)
T ss_pred CceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh-hEEE
Confidence 5789999999877666666665554332000 00001111111223445678888888875 4454 9999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-HcCCeEEEEeCCC--CCCCCHHHHHHhhc-----
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-KTGANLKFLNLND--DESPDLDKLKEMLS----- 206 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-~~g~~~~~v~~~~--~~~~d~~~l~~~l~----- 206 (458)
|+|+++|+.+++.++ .++||.|++++|.|+.. ...+. +.|++++.++++. ++.+|++.+++++.
T Consensus 125 t~Ga~~al~~l~~~l----~~pGD~Vlv~~P~Y~~~----~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~ 196 (496)
T PLN02376 125 SGGATGANETIMFCL----ADPGDVFLIPSPYYAAF----DRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQES 196 (496)
T ss_pred ccchHHHHHHHHHHh----CCCCCEEEECCCCccch----HHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhc
Confidence 999999999999998 78999999999999954 43333 5799999999863 46789999876532
Q ss_pred -CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCC---C-CC-----CC--CcEEEec
Q 012718 207 -RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVD---V-QG-----LD--ADFLVAS 267 (458)
Q Consensus 207 -~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~---~-~~-----~~--~d~~~~s 267 (458)
.+++++++++|+||||.+++ +++|+++|+++|++||+|++|+.-.. ... + .+ .. ..+++.|
T Consensus 197 ~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S 276 (496)
T PLN02376 197 NKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYS 276 (496)
T ss_pred CCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEe
Confidence 36799999999999999999 66788899999999999999984221 111 1 11 01 2245789
Q ss_pred ccCCCCCCc--eeEEEEecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH---HHHhC
Q 012718 268 SHKMCGPTG--IGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY---LSTIG 341 (458)
Q Consensus 268 ~~K~~gp~g--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~g 341 (458)
+||.||.+| +||++.+++ +.+.+.... .+ +..+.....++...++. +.. -
T Consensus 277 ~SK~~glpGlRvG~li~~~~~l~~~~~~~~---------------------~~--~~vs~~~Q~a~~~~L~d~~~~~~-~ 332 (496)
T PLN02376 277 LSKDMGLPGFRVGIVYSFNDSVVSCARKMS---------------------SF--GLVSSQTQLMLASMLSDDQFVDN-F 332 (496)
T ss_pred ccccCCCCcceEEEEEECCHHHHHHHHHHh---------------------hc--CCCCHHHHHHHHHHhCChhHHHH-H
Confidence 999998777 999999654 333221110 01 12333333444444431 111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC--------ChHHHHHHHhhhcCeEeccCCCC
Q 012718 342 MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI--------HPTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
+.+.++++++..+.+.+.|++. ++++..+. .+.++|++++.. ...++.+.+.++.||.+.||..|
T Consensus 333 l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~------aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F 405 (496)
T PLN02376 333 LMESSRRLGIRHKVFTTGIKKA-DIACLTSN------AGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSF 405 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCcccCCC------ceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCcccc
Confidence 4556777888888899999876 77665443 156899998631 12567777766559999999855
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.. +.++++||+++. .+.++++..+++|.+++++.
T Consensus 406 ~~------~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~~~ 439 (496)
T PLN02376 406 RC------TEPGWFRICFAN-MDDDTLHVALGRIQDFVSKN 439 (496)
T ss_pred CC------CCCCEEEEEeeC-CCHHHHHHHHHHHHHHHHHh
Confidence 22 126899999995 46799999999999998643
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=242.82 Aligned_cols=344 Identities=15% Similarity=0.141 Sum_probs=234.8
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhc-cCCC--CCcchhhhHHHHHHHHHHHHHHHHcC--------CCCCCcEEE
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYN-SNVH--RGIHFLSAKATDEYELARKKVAAFIN--------ASDSGEIVF 134 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~~v~~ 134 (458)
.+.|.|+.+.+..+.+.+.+.+.+...... .... .......+.......++|+++|++++ +++ ++|++
T Consensus 38 ~g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~-~~Iii 116 (468)
T PLN02450 38 SGIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDP-NKLVL 116 (468)
T ss_pred CeeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcCh-HHeEE
Confidence 578999999988777665555544322100 0000 00000011122344568888888885 344 48999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-HcCCeEEEEeCC--CCCCCCHHHHHHhhcC----
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-KTGANLKFLNLN--DDESPDLDKLKEMLSR---- 207 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-~~g~~~~~v~~~--~~~~~d~~~l~~~l~~---- 207 (458)
|+|+++++.+++.++ +++||.|++++|.|+.. ...+. ..|++++.++.+ ++..+|++.+++.+.+
T Consensus 117 t~Ga~~al~~l~~~l----~~pGd~Vlv~~P~Y~~~----~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~ 188 (468)
T PLN02450 117 TAGATSANETLMFCL----AEPGDAFLLPTPYYPGF----DRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKL 188 (468)
T ss_pred ccChHHHHHHHHHHh----CCCCCEEEECCCCCCch----HHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhc
Confidence 999999999999988 78999999999999854 33333 469999999986 3356788999888754
Q ss_pred --CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCC---ccc----CCC---------CCCCCcEEEe
Q 012718 208 --KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVP---HMV----VDV---------QGLDADFLVA 266 (458)
Q Consensus 208 --~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g---~~~----~~~---------~~~~~d~~~~ 266 (458)
+++++++++|+||||.+++ +++|.++|+++|++||+|++|+.- ..+ +.+ ...+..+++.
T Consensus 189 ~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~ 268 (468)
T PLN02450 189 NLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVY 268 (468)
T ss_pred CCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEE
Confidence 6899999999999999999 667888999999999999999831 111 111 1234578899
Q ss_pred cccCCCCCCc--eeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH--HHhC
Q 012718 267 SSHKMCGPTG--IGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL--STIG 341 (458)
Q Consensus 267 s~~K~~gp~g--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~--~~~g 341 (458)
|+||.||.+| +||++++++. ++.+..... + +..+.....++..+|+.- ...-
T Consensus 269 S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~---------------------~--~~~s~~~Q~a~~~~L~~~~~~~~~ 325 (468)
T PLN02450 269 SLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS---------------------F--GLVSSQTQYLLSALLSDKKFTKNY 325 (468)
T ss_pred eccccCCCCCccEEEEEECCHHHHHHHHHHhh---------------------c--CCCCHHHHHHHHHHhCCchhHHHH
Confidence 9999998777 9999998653 333221110 1 122333344444444321 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------ChHHHHHHHhhhcCeEeccCCCCC
Q 012718 342 MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------HPTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
+++.++++++.++.+.+.|+++ ++.+..+. .+.++|++++.. ...++.+.+.++.||.+.||..|.
T Consensus 326 l~~~~~~l~~rr~~l~~~L~~~-gi~~~~~~------~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~ 398 (468)
T PLN02450 326 LEENQKRLKQRQKKLVSGLEAA-GIKCLKSN------AGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCH 398 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCcccCCC------ceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccC
Confidence 4667788889999999999887 77664443 155899988631 123466666554499999998653
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
. +.++++|++++. .+.+++++.+++|.+++++..
T Consensus 399 ~------~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 399 C------TEPGWFRVCFAN-MSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred C------CCCCEEEEEecC-CCHHHHHHHHHHHHHHHHhcc
Confidence 2 226899999995 478999999999999987543
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-29 Score=242.82 Aligned_cols=345 Identities=13% Similarity=0.139 Sum_probs=237.2
Q ss_pred CCCeEEecCCCCCCCcHHHHHHHHHHHHHhc---cCCCCCcchhhhHHHHHHHHHHHHHHHHcC--------CCCCCcEE
Q 012718 65 SKKLVYLDNAATSQKPIAVLKALQNYYEAYN---SNVHRGIHFLSAKATDEYELARKKVAAFIN--------ASDSGEIV 133 (458)
Q Consensus 65 ~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~~v~ 133 (458)
..++|.|..+.+..+-+.+.+.+.+...... .+.....+...+....+...+|+++|++++ .++ ++|+
T Consensus 46 p~g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p-~~Iv 124 (447)
T PLN02607 46 PSGVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDP-DRIV 124 (447)
T ss_pred CCceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCH-HHeE
Confidence 3679999999999988887777766543110 000000000111123445678888888875 233 4999
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcC----
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR---- 207 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~---- 207 (458)
+|+|+++|+.+++.++ +++||.|+++.|.|+..... +..+.|++++.|+.+.+ +.+|++.+++++.+
T Consensus 125 it~G~t~al~~l~~~l----~~pGD~Vlv~~P~Y~~f~~~---~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~ 197 (447)
T PLN02607 125 LTAGATAANELLTFIL----ADPGDALLVPTPYYPGFDRD---LRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAA 197 (447)
T ss_pred EcCChHHHHHHHHHHh----CCCCCEEEEcCCCCcchHHH---HHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999888 68999999999999955321 22246899999988743 45799999998864
Q ss_pred --CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cC-CC-------C--C-CCCcEEEecc
Q 012718 208 --KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VV-DV-------Q--G-LDADFLVASS 268 (458)
Q Consensus 208 --~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~-~~-------~--~-~~~d~~~~s~ 268 (458)
+++++++++|+||||.++| +++|.++|+++|+++|+|++|+.... ++ .+ . . .+..+++.|+
T Consensus 198 ~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~ 277 (447)
T PLN02607 198 NIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSL 277 (447)
T ss_pred CCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcc
Confidence 6799999999999999999 77889999999999999999984321 11 11 0 1 2345788899
Q ss_pred cCCCCCCc--eeEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH---HHHHhCH
Q 012718 269 HKMCGPTG--IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID---YLSTIGM 342 (458)
Q Consensus 269 ~K~~gp~g--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~---~~~~~g~ 342 (458)
||.||..| +|+++.. +++++.+.... .+ +..+.....++...|+ +... -+
T Consensus 278 SK~fg~~GlRvG~ivs~n~~l~~~~~~~~---------------------~~--~~~s~~~q~~~~~~L~d~~~~~~-~l 333 (447)
T PLN02607 278 SKDLGLPGFRVGTIYSYNDKVVTTARRMS---------------------SF--TLVSSQTQHLLASMLSDEEFTEN-YI 333 (447)
T ss_pred hhcCCCCcceEEEEEEcCHHHHHHHHHHh---------------------hc--CCCCHHHHHHHHHHhCCchhHHH-HH
Confidence 99988777 9999984 34433332111 01 1122222333333333 1212 14
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------ChHHHHHHHhhhcCeEeccCCCCCh
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------HPTDIATLLDQQYGVATRSGHHCAQ 415 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~l~~~~gi~~~~g~~~~~ 415 (458)
...++++++..+.+.+.|++. ++.+..+. .+.++|++++.. ...++.+.+.++.||.+.||..|..
T Consensus 334 ~~~r~~l~~~~~~~~~~L~~~-gi~~~~~~------ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~ 406 (447)
T PLN02607 334 RTNRERLRKRYEMIVQGLRRA-GIECLKGN------AGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHC 406 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCcccCC------eeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCC
Confidence 567788888889999999886 76654432 266999998631 1236676666544999999985532
Q ss_pred hhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 416 PLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 416 ~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
. .++++||+++. .+++++++.+++|.+++++-+
T Consensus 407 ~------~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~~~ 439 (447)
T PLN02607 407 S------EPGWFRVCFAN-MSEDTLEVALKRIHRFMDRRK 439 (447)
T ss_pred C------CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHHH
Confidence 1 27899999995 478999999999999987544
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=253.86 Aligned_cols=346 Identities=17% Similarity=0.144 Sum_probs=266.9
Q ss_pred CCeEEecCCCCCC----CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 66 KKLVYLDNAATSQ----KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 66 ~~~i~l~~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
++.+|+++.+.|. .|..+.+.+.+....+-.+. ......+.+..+.+.+.+..+++++|++.. ++.++.++|.+
T Consensus 100 kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~Tayt-PYqaEisQG~lqal~~~Qt~ia~LtG~~~a-naSL~d~aTAa 177 (993)
T PLN02414 100 KNKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYT-PYQAEIAQGRLESLLNYQTMITDLTGLPMS-NASLLDEGTAA 177 (993)
T ss_pred cCCccccccCCCCCCccCCHHHHHHHHhChHHHhhcC-CCchHHHHHHHHHHHHHHHHHHHHhCCChh-hEeecCChHHH
Confidence 5667888888887 88888888887765433221 111223345667788899999999999987 99999999999
Q ss_pred HHHHHHHcCCCCCCC--CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 142 INLVAYSWGLSNLKS--GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~--g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
.+.++.+++ +++ +++|++++..|+++...|+..++..|++++.++.+.. + ...+.+..+ +.+..|
T Consensus 178 aea~~~a~~---~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~---~------~~~~~v~~v-lvq~P~ 244 (993)
T PLN02414 178 AEAMAMCNN---ILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF---D------YSSGDVCGV-LVQYPA 244 (993)
T ss_pred HHHHHHHHh---cccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh---c------cccCceEEE-EEecCC
Confidence 999988874 453 4789999999999999999999999999999987531 1 112233333 355557
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcccC-CCCCCCCcEEEecccCCCCCCc-----eeEEEEeccccccCCCc
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-DVQGLDADFLVASSHKMCGPTG-----IGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~-~~~~~~~d~~~~s~~K~~gp~g-----~G~l~~~~~~~~~l~~~ 293 (458)
.+|.+.|+++|.++||++|+++++ +++.++..++ +..++|+|+++++.|||++|.| +|+++++++..+.++..
T Consensus 245 ~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~Pgr 323 (993)
T PLN02414 245 TDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGR 323 (993)
T ss_pred CCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCc
Confidence 799999999999999999999999 8888887777 4889999999999999874444 89999999987777656
Q ss_pred cccCcceEeeecCC---CCCCCCCCccCCCCCCHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 294 LGGGEMISDVFLDH---STFADPPSRFEAGTPAIGEAIGLGAAIDYL-----STIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 294 ~~g~~~~~~~~~~~---~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-----~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+.||+.-....... -.......|++.+|.|+....++.+++... ...|++++.+++.+++.++.+.|.+. |
T Consensus 324 iVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~-G 402 (993)
T PLN02414 324 IIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL-G 402 (993)
T ss_pred ccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc-C
Confidence 67774321100000 012344568999999998888888777533 34799999999999999999999875 7
Q ss_pred EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
+++..++ . ...+.|+++ +..++.++|.++ ||.++... .+.+|+|++.++|++|||++++
T Consensus 403 ~~~~~~~-~-----f~~vt~~~~--~~~~v~~~L~~~-gI~l~~~~------------~~~lrvs~~e~~T~edId~L~~ 461 (993)
T PLN02414 403 FQVQSLP-F-----FDTVKVKCS--DADAIADAAAKV-GINLRVVD------------ANTVTVSFDETTTLEDVDKLFK 461 (993)
T ss_pred CccCCCC-C-----cCeEEEecC--CHHHHHHHHHHC-CCeeEEec------------CCeEEEEeeccCCHHHHHHHHH
Confidence 8876553 1 458888876 458899999998 99876321 4579999999999999999999
Q ss_pred HHHH
Q 012718 446 ALNE 449 (458)
Q Consensus 446 ~l~~ 449 (458)
.|..
T Consensus 462 ~l~~ 465 (993)
T PLN02414 462 VFAG 465 (993)
T ss_pred HHcc
Confidence 9963
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=238.93 Aligned_cols=335 Identities=16% Similarity=0.178 Sum_probs=232.9
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~g~ 138 (458)
++++.|+.+... ..|+.+.+++.+...... . .++.......++|+++++++ |. ++++++++|+|+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~--~------~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~ 100 (395)
T PRK08175 29 EDIIDFSMGNPDGPTPPHIVEKLCEVAQRPD--T------HGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGS 100 (395)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhCCC--c------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCc
Confidence 566778776544 445656666666543210 0 11112334457777777765 33 333379999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc---CCceEEEEe
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIH 215 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~ 215 (458)
++++.+++.++ +++||+|++++|+|+..... ++..|++++.++.++++. +.++++++++ .++++++++
T Consensus 101 ~~~l~~~~~~~----~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~~~-~~~~l~~~l~~~~~~~~~v~i~ 171 (395)
T PRK08175 101 KEGLAHLMLAT----LDHGDTVLVPNPSYPIHIYG----AVIAGAQVRSVPLVEGVD-FFNELERAIRESYPKPKMMILG 171 (395)
T ss_pred HHHHHHHHHHh----CCCCCEEEEcCCCCcchHHH----HHHcCCeEEEEecccCCC-cHHHHHHHHhhccCCceEEEEe
Confidence 99999998887 68999999999999965433 345699999999876543 5788888776 378999999
Q ss_pred cccCcCcccccH---HHHHHHHHhcCcEEEEeccccCCc----ccCC---CCC-CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILPI---EEIVHWSHDVGAKVLVDACQSVPH----MVVD---VQG-LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~l---~~i~~l~~~~~~~vivD~a~~~g~----~~~~---~~~-~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+|+||||.+++. ++|+++|+++|+++|+|++|.... .+.. +.. .+..+++.|+||.||.+| +||++.
T Consensus 172 ~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~ 251 (395)
T PRK08175 172 FPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG 251 (395)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC
Confidence 999999999996 689999999999999999986321 1111 111 234577899999988777 899999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+..... ....++.... ..++..++..... .++++++++++.++++.+.|++
T Consensus 252 ~~~l~~~~~~~~~--------------------~~~~~~~~~~-q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~ 309 (395)
T PRK08175 252 NPELVSALARIKS--------------------YHDYGTFTPL-QVAAIAALEGDQQ-CVRDIAEQYKRRRDVLVKGLHE 309 (395)
T ss_pred CHHHHHHHHHHHh--------------------hcccCCCcHH-HHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776653221 0111223332 2333334432111 2567788888999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCCC----ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVENI----HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
. ++.+..+. .+.++|++++.. +..++.+.+.++.||.+.+|..+... .++++|+++. .+.+
T Consensus 310 ~-~~~~~~p~------~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~------~~~~lRis~~--~~~~ 374 (395)
T PRK08175 310 A-GWMVEMPK------ASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDY------GDTHVRFALI--ENRD 374 (395)
T ss_pred c-CCcccCCC------EEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcC------CCCeEEEEeC--CCHH
Confidence 7 66654332 267999998742 35788887664449999998754211 1568999997 5789
Q ss_pred HHHHHHHHHHHHHHhh
Q 012718 439 DVDEFIHALNETVSFF 454 (458)
Q Consensus 439 di~~l~~~l~~~~~~~ 454 (458)
++.+++++|.++++++
T Consensus 375 ~~~~al~~l~~~l~~~ 390 (395)
T PRK08175 375 RIRQAIRGIKAMFRAD 390 (395)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988754
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=236.79 Aligned_cols=336 Identities=18% Similarity=0.189 Sum_probs=234.3
Q ss_pred eEEec-CCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 68 LVYLD-NAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 68 ~i~l~-~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
++.|. ++..| ...+.+.+++.+.++++..+.. .........+...++++.+++++|.+ ..+++++|++|+..+
T Consensus 47 ~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~--~s~~~~g~~~~~~~Le~~la~~~g~~---~~l~~~sG~~an~~a 121 (402)
T TIGR01821 47 VTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAG--GTRNISGTNIPHVELEAELADLHGKE---SALVFTSGYVANDAT 121 (402)
T ss_pred EEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCc--chhhhhCCcHHHHHHHHHHHHHhCCC---eEEEECchHHHHHHH
Confidence 44444 44555 4567799999999887543321 11111223456678999999999964 567777779999988
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc----CCceEEEEecccCcC
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHISNML 221 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~n~t 221 (458)
+..+.. ..+++.|+.....|.+...++ ...|+++..++.. |++++++.++ +++++|++++++|++
T Consensus 122 i~~l~~--~~~~~~v~~~~~~h~s~~~~~----~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~e~~~~~~ 190 (402)
T TIGR01821 122 LATLAK--IIPGCVIFSDELNHASMIEGI----RHSGAEKFIFRHN-----DVAHLEKLLQSVDPNRPKIIAFESVYSMD 190 (402)
T ss_pred HHHhhC--CCCCCEEEEcchHhHHHHHHH----HHcCCeEEEECCC-----CHHHHHHHHHhccCCCCeEEEEcCCCCCC
Confidence 887731 236777766666666554333 3457777666543 6777777765 257899999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcc-cC--C-CC--C--CCCcEEEecccCCCCCCceeEEEEeccccccCCCc
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM-VV--D-VQ--G--LDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~--~-~~--~--~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~ 293 (458)
|.+.|+++|.++|+++|+++|+|++|+.|.. +. . .. . ..+|+++++++|.+|..| ||++.++++++.+...
T Consensus 191 G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~i~~~~~~~~~l~~~ 269 (402)
T TIGR01821 191 GDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG-GYIAASRKLIDAIRSY 269 (402)
T ss_pred CCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC-ceeecCHHHHHHHHHh
Confidence 9999999999999999999999999996543 11 0 01 1 136899999999888766 8888888776655422
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
..++ .| .++.+...++++.++++.+.+. +.+.++..++.+++.+.|+++ ++++..+.
T Consensus 270 ~~~~------------------~~-t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~- 326 (402)
T TIGR01821 270 APGF------------------IF-TTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEAL-GIPVIPNP- 326 (402)
T ss_pred CcCc------------------ee-cCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHc-CCCcCCCC-
Confidence 1110 11 2345665667777888887764 566777788999999999887 76654432
Q ss_pred CCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++++.+.+... ...++.+.|.+++||.+++..+...+. ....+||+++.+++++||+++++.|+++++
T Consensus 327 ------~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~-----g~~~lRis~~~~~t~edi~~~~~~l~~~~~ 395 (402)
T TIGR01821 327 ------SHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPR-----GTERLRITPTPAHTDKMIDDLVEALLLVWD 395 (402)
T ss_pred ------CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCC-----CCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 66777766531 345788887654499998754332211 146899999999999999999999999987
Q ss_pred hh
Q 012718 453 FF 454 (458)
Q Consensus 453 ~~ 454 (458)
++
T Consensus 396 ~~ 397 (402)
T TIGR01821 396 RL 397 (402)
T ss_pred Hc
Confidence 64
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=234.85 Aligned_cols=320 Identities=15% Similarity=0.145 Sum_probs=233.9
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc------CCCCCCcEEEeCChh
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVFTKNAT 139 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~v~~t~g~t 139 (458)
..+.|+.+... ++|+.+.+++.+.+......... + + ......+|+++++++ +++++ +|++|+|++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~--Y----~-~~g~~~lr~aia~~~~~~~~~~~~~~-~I~it~G~~ 98 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNR--Y----P-DRDAVALRADLAAYLTAQTGVGLTVE-NVWAANGSN 98 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhcc--C----C-CCchHHHHHHHHHHhhhhccCCCChh-hEEECCCHH
Confidence 45788888766 78888999998886542111111 1 1 113457888888888 34454 999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEeccc
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHIS 218 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~ 218 (458)
+++.+++.++ +++||.|+++.|+|+ .+...++..|.+++.++.++++.+|++.+++++.+ +++++++++|+
T Consensus 99 ~~l~~~~~~~----~~~gd~v~v~~P~y~----~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~ 170 (368)
T PRK03317 99 EILQQLLQAF----GGPGRTALGFVPSYS----MHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPN 170 (368)
T ss_pred HHHHHHHHHh----cCCCCEEEEeCCChH----HHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCC
Confidence 9999999988 689999999999998 44666777899998888776778899999999874 77899999999
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEeccccCCc---cc--CCC-CCCCCcEEEecccCCCCCCc--eeEEEEeccccccC
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPH---MV--VDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAM 290 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~---~~--~~~-~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l 290 (458)
||||.+++.+++.++++..++++|+|++|+.-. .+ ..+ ......+++.|++|.+|.+| +|++++++++++.+
T Consensus 171 NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l 250 (368)
T PRK03317 171 NPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDAL 250 (368)
T ss_pred CCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHH
Confidence 999999999999999999899999999998321 11 111 11224577889999998667 89999998887766
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYG 370 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 370 (458)
...... .+.+.....++..+++.... +.+..+++.+.++++.+.|++. ++++..
T Consensus 251 ~~~~~~-----------------------~~~s~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 304 (368)
T PRK03317 251 RLVRLP-----------------------YHLSAVTQAAARAALRHADE--LLASVAALRAERDRVVAWLREL-GLRVAP 304 (368)
T ss_pred HhcCCC-----------------------CCCCHHHHHHHHHHhhCHHH--HHHHHHHHHHHHHHHHHHHHHC-CCEeCC
Confidence 532210 12333444455555554332 3344456677788888888887 777654
Q ss_pred CCCCCcCccccEEEE-EeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSF-NVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~-~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+. ++++.+ .++ +..++.+.+.++ ||.+++. +.++++|++++ +.+++++++++|++
T Consensus 305 ~~-------~~~~~~~~~~--~~~~~~~~l~~~-Gv~v~~~-----------~~~~~iRi~~~---~~~~~~~~~~~l~~ 360 (368)
T PRK03317 305 SD-------ANFVLFGRFA--DRHAVWQGLLDR-GVLIRDV-----------GIPGWLRVTIG---TPEENDAFLAALAE 360 (368)
T ss_pred CC-------CcEEEEeccC--CHHHHHHHHHHC-CEEEEeC-----------CCCCeEEEecC---CHHHHHHHHHHHHH
Confidence 43 554444 443 567888888887 9998753 22579999987 67899999999999
Q ss_pred HHH
Q 012718 450 TVS 452 (458)
Q Consensus 450 ~~~ 452 (458)
+++
T Consensus 361 ~~~ 363 (368)
T PRK03317 361 VLA 363 (368)
T ss_pred HHH
Confidence 875
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-28 Score=235.43 Aligned_cols=335 Identities=19% Similarity=0.177 Sum_probs=232.2
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH----cCCC--CCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF----INAS--DSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~g~~--~~~~v~~t~g~ 138 (458)
.+.+.|..+... +.|+.+.+++.+.+... . ..+ .......++|+.++++ +|.+ ++++|++|+|+
T Consensus 24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~---~--~~Y----~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~ 94 (387)
T PRK07777 24 TGAVNLGQGFPDEDGPPEMLEAAQEAIAGG---V--NQY----PPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGA 94 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcC---C--CCC----CCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCc
Confidence 456777776644 33555666666655421 1 011 1112234566666654 5654 32379999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC---CCCCHHHHHHhhcCCceEEEEe
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD---ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~---~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
++|+.+++.++ +++||+|+++.|.|++. ...++..|.+++.++.+++ +.+|++++++.+++++++|+++
T Consensus 95 ~~al~~~~~~~----~~~gd~vli~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~ 166 (387)
T PRK07777 95 TEAIAAAVLGL----VEPGDEVLLIEPYYDSY----AAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVN 166 (387)
T ss_pred HHHHHHHHHHh----cCCCCEEEEeCCCchhh----HHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEc
Confidence 99999999877 68999999999999843 5556677999999998754 4589999999998889999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc------ccCC-CCC-CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVVD-VQG-LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~------~~~~-~~~-~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+++||||.+++ +++|.++|+++++++|+|++|.... .++. +.. .+.++++.|+||.||.+| +||++.
T Consensus 167 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~ 246 (387)
T PRK07777 167 SPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACG 246 (387)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEec
Confidence 99999999997 7788999999999999999987321 1111 121 346899999999998667 899999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+...... ...+.+.. ...++..++..... -++++++.++++++++.+.|++
T Consensus 247 ~~~l~~~~~~~~~~--------------------~~~~~~~~-~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 304 (387)
T PRK07777 247 PAPLIAAVRAAKQY--------------------LTYVGGAP-FQPAVAHALDHEDA-WVAALRDSLQAKRDRLAAGLAE 304 (387)
T ss_pred CHHHHHHHHHHHhh--------------------cccCCCCH-HHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 98877655432210 00011222 22333333432112 2567778889999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
. ++++..+. .+.++|++++. .+..++++.|.+++||.+.+|..+.... -+.++++|++++ .+.++
T Consensus 305 ~-~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~---~~~~~~~Ri~~~--~~~~~ 372 (387)
T PRK07777 305 A-GFEVHDSA------GTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPA---DAWNHLVRFAFC--KRDDT 372 (387)
T ss_pred C-CCCccCCC------cceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCC---cCCCCeEEEEec--CCHHH
Confidence 6 66665443 14577777642 3568899999754599999987442210 012568999998 47899
Q ss_pred HHHHHHHHHHHH
Q 012718 440 VDEFIHALNETV 451 (458)
Q Consensus 440 i~~l~~~l~~~~ 451 (458)
+++.+++|.++.
T Consensus 373 l~~~l~~l~~~~ 384 (387)
T PRK07777 373 LDEAIRRLRALR 384 (387)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-28 Score=236.98 Aligned_cols=336 Identities=20% Similarity=0.217 Sum_probs=229.8
Q ss_pred eEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 68 LVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 68 ~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
..|.++...+ ..++.+.+++.+.+..+..+.. ....-++......++++.+++++|.+ +.++++ +|++|+..++
T Consensus 49 ~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~--~s~~~~~~~~~~~~Le~~la~~~g~~--~~i~~~-sG~~a~~~~i 123 (410)
T PRK13392 49 TIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAG--GTRNISGTSHPHVLLERELADLHGKE--SALLFT-SGYVSNDAAL 123 (410)
T ss_pred EEEECCCccCCCCCHHHHHHHHHHHHHcCCCCc--hhhhcccChHHHHHHHHHHHHHhCCC--CEEEEC-cHHHHHHHHH
Confidence 3444455555 3678899999998877543321 11111223334668999999999964 245555 5577888887
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc----CCceEEEEecccCcCc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHISNMLA 222 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG 222 (458)
..+. ...+|+.|+++...|.+.. ..++..|+++..++.+ |.+.+++.+. +++++|++++++||||
T Consensus 124 ~~l~--~~~~g~~vi~~~~~h~s~~----~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG 192 (410)
T PRK13392 124 STLG--KLLPGCVILSDALNHASMI----EGIRRSGAEKQVFRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDG 192 (410)
T ss_pred HHHh--cCCCCCEEEEehhhhHHHH----HHHHHcCCeEEEEeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCc
Confidence 7663 1347888888777777543 3345668888777543 4455555543 4789999999999999
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcccCC---C----C-CCCCcEEEecccCCCCCCceeEEEEeccccccCCCcc
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD---V----Q-GLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~---~----~-~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~ 294 (458)
.+.|+++|.++|+++|+++|+|++|+.|..... + . ....|+++.|++|.+|..| ||++.++++++.+..+.
T Consensus 193 ~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G-G~~~~~~~~~~~l~~~~ 271 (410)
T PRK13392 193 DIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG-GYIAASADLIDFVRSFA 271 (410)
T ss_pred ccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc-chhhcCHHHHHHHHHhC
Confidence 999999999999999999999999996653111 0 0 1136899999999888766 88888887766544322
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
.++ .+ ..+.+.....++.++|+.+... ....+++.++++++.+.|+++ |+++..+.
T Consensus 272 ~~~------------------~~-s~~~~~~~~~a~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-- 327 (410)
T PRK13392 272 PGF------------------IF-TTALPPAVAAGATAAIRHLKTS--QTERDAHQDRVAALKAKLNAN-GIPVMPSP-- 327 (410)
T ss_pred cch------------------hc-cCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCCCCCC--
Confidence 111 01 1234445567777888877653 345577888899999999887 77654332
Q ss_pred CcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 375 EHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++++.+.++.. +..++.+.|.++.||.+++..+...+ ....++|++++.++|++|++++++.|+++.++
T Consensus 328 -----~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~-----~~~~~lRis~~~~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 328 -----SHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVP-----RGTERLRITPTPLHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred -----CCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCC-----CCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 56665555421 34578888864339999875432211 11468999999999999999999999998775
Q ss_pred h
Q 012718 454 F 454 (458)
Q Consensus 454 ~ 454 (458)
+
T Consensus 398 ~ 398 (410)
T PRK13392 398 L 398 (410)
T ss_pred c
Confidence 3
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=240.90 Aligned_cols=342 Identities=16% Similarity=0.189 Sum_probs=243.2
Q ss_pred CCeEEecCCCCCC--CcHHHH-HHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC----C--CCCCcEEEeC
Q 012718 66 KKLVYLDNAATSQ--KPIAVL-KALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN----A--SDSGEIVFTK 136 (458)
Q Consensus 66 ~~~i~l~~~~~~~--~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~--~~~~~v~~t~ 136 (458)
+.++-|..+...+ .|.... +++.+.+...... ....+...+....+|+.+++++. . +++ +|++|+
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~-----~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~-~IiiT~ 162 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGAS-----LALQYGPTAGLPELREAIAAYLLARRGISCEPE-QIVITS 162 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchh-----hhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcC-eEEEeC
Confidence 6677887776432 343333 3333333322111 01122234555677777777774 3 343 999999
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEE-EE
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLV-VI 214 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v-~~ 214 (458)
|+++|+.+++..+ +++||.|++.+|+|++. ..+.+..|++++.||++++|. |++.|++.+.. +++++ ++
T Consensus 163 G~q~al~l~~~~l----~~pGd~v~vE~PtY~~~----~~~~~~~g~~~~~vp~d~~G~-~~e~le~~~~~~~~k~~y~~ 233 (459)
T COG1167 163 GAQQALDLLLRLL----LDPGDTVLVEDPTYPGA----LQALEALGARVIPVPVDEDGI-DPEALEEALAQWKPKAVYVT 233 (459)
T ss_pred CHHHHHHHHHHHh----CCCCCEEEEcCCCcHHH----HHHHHHcCCcEEecCCCCCCC-CHHHHHHHHhhcCCcEEEEC
Confidence 9999999999988 78999999999999955 556667799999999996665 99999999876 56655 57
Q ss_pred ecccCcCcccccH---HHHHHHHHhcCcEEEEeccccCCc----cc---CCCCCCCCcEEEecccCCCCCCc-eeEEEEe
Q 012718 215 HHISNMLASILPI---EEIVHWSHDVGAKVLVDACQSVPH----MV---VDVQGLDADFLVASSHKMCGPTG-IGFLFGK 283 (458)
Q Consensus 215 ~~~~n~tG~~~~l---~~i~~l~~~~~~~vivD~a~~~g~----~~---~~~~~~~~d~~~~s~~K~~gp~g-~G~l~~~ 283 (458)
+..+||||..+++ ++|.++|++||++||+|+.|+.-. -+ ..++..+..++++||||.+.|.- +||++++
T Consensus 234 P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p 313 (459)
T COG1167 234 PTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAP 313 (459)
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCC
Confidence 8889999999995 489999999999999999998211 11 23445578999999999777654 9999999
Q ss_pred ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY-LSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 284 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~-~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
+++++.+..... .....++.....++..-+.. .....+.++++.+++.++.+.+.|.+
T Consensus 314 ~~~~~~~~~~k~---------------------~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~ 372 (459)
T COG1167 314 PELIEKLLRLKQ---------------------AADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAE 372 (459)
T ss_pred HHHHHHHHHHHH---------------------HhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988777654332 11122333333333322221 11113678888888899999999987
Q ss_pred CC--CEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEecc-CCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 363 IP--NIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRS-GHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 363 ~~--~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~-g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
.. .+++..+.. |.++|++++. ++..++.+.+.++ |+.+.+ |..+.... ...+++|++++. .+.+
T Consensus 373 ~~~~~~~~~~p~g------G~flwl~l~~~~~~~~l~~~a~~~-gv~i~~~g~~f~~~~----~~~~~~Rl~~s~-~~~e 440 (459)
T COG1167 373 YLPELATWTRPEG------GLFLWLELPEGIDARELLAAALEK-GVVVTPLGSAFSADG----DPRNGLRLSFSS-PSEE 440 (459)
T ss_pred hCCCCeeeecCCc------eEEEEEEcCCCCCHHHHHHHHHHC-CCEEEcCCccccCCC----CCCCeEEEEcCC-CCHH
Confidence 73 566666552 5699999985 5788999999988 998887 76553321 025699999997 6789
Q ss_pred HHHHHHHHHHHHHHhhh
Q 012718 439 DVDEFIHALNETVSFFN 455 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~ 455 (458)
++++.++.|.+++++..
T Consensus 441 ~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 441 EIEEGIKRLAALLREAA 457 (459)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988654
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-28 Score=230.09 Aligned_cols=308 Identities=16% Similarity=0.180 Sum_probs=226.5
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC---CCCCCcEEEeCChhH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN---ASDSGEIVFTKNATE 140 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g---~~~~~~v~~t~g~t~ 140 (458)
+.+.+.|+.+... ++|+.+.+++.+.+.....+ .+. .....++|++++++++ .+++ +|++|+|+++
T Consensus 18 ~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~----~Y~-----~~~~~~Lr~aia~~~~~~~~~~~-~i~it~Ga~~ 87 (335)
T PRK14808 18 KRDRTYLALNENPFPFPEDLVDEVFRRLNSDTLR----IYY-----DSPDEELIEKILSYLDTDFLSKN-NVSVGNGADE 87 (335)
T ss_pred CCceeEecCCCCCCCCCHHHHHHHHHHhhhhhhh----cCC-----CCChHHHHHHHHHHhCCCCCCcc-eEEEcCCHHH
Confidence 3578999988766 67888889888776431111 000 0124579999999998 5554 9999999999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCc
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM 220 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~ 220 (458)
++.+++.++ |.|++.+|+|+ .+..+++..|++++.++.++++.++... + .+++++++++|+||
T Consensus 88 ~i~~~~~~~--------d~v~v~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~~~----~-~~~~~i~i~nP~NP 150 (335)
T PRK14808 88 IIYVMMLMF--------DRSVFFPPTYS----CYRIFAKAVGAKFLEVPLTKDLRIPEVN----V-GEGDVVFIPNPNNP 150 (335)
T ss_pred HHHHHHHHh--------CcEEECCCCHH----HHHHHHHHcCCeEEEecCCCcCCCChhH----c-cCCCEEEEeCCCCC
Confidence 999999865 46999999999 6677888889999999998777655332 2 35689999999999
Q ss_pred CcccccHHHHHHHHHhcCcEEEEeccccCCc--ccCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccc
Q 012718 221 LASILPIEEIVHWSHDVGAKVLVDACQSVPH--MVVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 221 tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~--~~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~ 295 (458)
||.+++.+++.+++ +++++||+|++|..-. .... +......+++.|+||.+|.+| +||+++++++++.+.....
T Consensus 151 TG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~ 229 (335)
T PRK14808 151 TGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRL 229 (335)
T ss_pred CCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcC
Confidence 99999999999998 5899999999987211 1111 223346788899999999777 9999999888776653321
Q ss_pred cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE 375 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~ 375 (458)
. .+.+.....++..+++.... +.+..+.+.+.++++.+.|++. ++++..+.
T Consensus 230 ~-----------------------~~~~~~~q~a~~~~l~~~~~--~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~--- 280 (335)
T PRK14808 230 P-----------------------FNVSYVSQMFAKVALDHREI--FEERTKFIVEERERMKSALREM-GYRITDSR--- 280 (335)
T ss_pred C-----------------------CCCCHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHHHHHHHC-CCEECCCC---
Confidence 1 12233334444555543221 3445566667788899999887 77765443
Q ss_pred cCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 376 HVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 376 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
++++++.+++.+..++.+.|.++ ||.++.. ..++||+++ +.++.+++++.|+++
T Consensus 281 ----g~f~~~~l~~~~~~~~~~~l~~~-Gi~V~~~-------------~~~~Risi~---~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 281 ----GNFVFIFMEKEEKERLLEHLRAK-NIAVRSF-------------REGVRITIG---KREENDMILKELEVF 334 (335)
T ss_pred ----CeEEEEeCCCccHHHHHHHHHHC-CeEEEEC-------------CCCeEEecC---CHHHHHHHHHHHHhh
Confidence 78899998866667888999888 9999831 357999998 679999999998753
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-28 Score=238.28 Aligned_cols=338 Identities=18% Similarity=0.223 Sum_probs=234.4
Q ss_pred CCeEEecCC---CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNA---ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
.+.++|... +.+...+...+++.+.+.++..+. +.....++.....+++++.+|+++|.+ +.+++++ |..++
T Consensus 100 ~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~--~~sr~~~g~~~~~~ele~~lA~~~g~~--~ai~~~~-G~~an 174 (489)
T PLN02483 100 RRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSAST--CSSRVDGGTTKLHRELEELVARFVGKP--AAIVFGM-GYATN 174 (489)
T ss_pred ceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCC--CccccccCCcHHHHHHHHHHHHHhCCC--cEEEECC-HHHHH
Confidence 555666443 333333444445555555443221 122222345678889999999999965 2666655 45566
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc-------CCc-----e
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-------RKT-----K 210 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-------~~~-----~ 210 (458)
..++.++ +++||.|++.+++|.+... .++..|++++.++.+ |.+++++.++ +++ +
T Consensus 175 ~~~i~al----~~~Gd~Vi~d~~~h~s~~~----~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k 241 (489)
T PLN02483 175 STIIPAL----IGKGGLIISDSLNHNSIVN----GARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKK 241 (489)
T ss_pred HHHHHHh----CCCCCEEEEcchhhHHHHH----HHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCce
Confidence 6667766 7899999999999997643 456679999999865 5566655543 222 3
Q ss_pred -EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCccc---------CCCCCCCCcEEEecccCCCCCCceeEE
Q 012718 211 -LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFL 280 (458)
Q Consensus 211 -~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~g~G~l 280 (458)
+|+++.+.|++|.+.++++|+++|+++|+++|+|++|+.|... .++...+.|++++|+||.+|+.| |++
T Consensus 242 ~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G-G~i 320 (489)
T PLN02483 242 IIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG-GYI 320 (489)
T ss_pred EEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc-eEE
Confidence 6677888899999999999999999999999999999865431 22333468999999999999876 999
Q ss_pred EEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-C---HHHHHHHHHHHHHHH
Q 012718 281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-G---MQKIHAYEMELAKYL 356 (458)
Q Consensus 281 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g---~~~~~~~~~~l~~~l 356 (458)
++++++++.+.....+. ...++.+.....++.++++.+... + ..+..++++++++++
T Consensus 321 ~~~~~li~~l~~~~~~~-------------------~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l 381 (489)
T PLN02483 321 AGSKELIQYLKRTCPAH-------------------LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFF 381 (489)
T ss_pred EcCHHHHHHHHHhCccc-------------------cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH
Confidence 99988887765432110 012234444555566777766532 1 234567889999999
Q ss_pred HHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 357 YENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 357 ~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
.+.|+++ |+.+..+.. ++++++.+.. .+..++.+.|.++ ||.+.+..++..+. ..+.+|++++..+
T Consensus 382 ~~~L~~~-G~~v~~~~~------sp~~~l~l~~~~~~~~~~~~Ll~~-GI~v~~~~fp~~p~-----~~~~vRi~isa~~ 448 (489)
T PLN02483 382 RSELQKM-GFEVLGDND------SPVMPIMLYNPAKIPAFSRECLKQ-NVAVVVVGFPATPL-----LLARARICISASH 448 (489)
T ss_pred HHHHHHC-CCcccCCCC------CCEEEEEECCHHHHHHHHHHHHHC-CcEEeeeCCCCCCC-----CCceEEEEeCCCC
Confidence 9999988 777665432 4566665532 2345788888888 99998644432221 1468999999989
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 012718 436 TKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~ 454 (458)
+.+||++++++|+++++.+
T Consensus 449 t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 449 SREDLIKALEVISEVGDLV 467 (489)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988754
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=239.70 Aligned_cols=339 Identities=14% Similarity=0.121 Sum_probs=229.1
Q ss_pred CCCeEEecCCCC----CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEE
Q 012718 65 SKKLVYLDNAAT----SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVF 134 (458)
Q Consensus 65 ~~~~i~l~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~ 134 (458)
+.+++++.-|.+ -++|+.+.+++.+.+.... ..++.......++|+++++++ | +++ ++|++
T Consensus 31 g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~--------~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~-~~I~i 101 (433)
T PRK06855 31 GVKITWENIGDPIAKGEKIPDWMKEIVAELVMDDK--------SYGYCPTKGVLETREFLAELNNKRGGAQITP-DDIIF 101 (433)
T ss_pred cccccccccCCCcccCCCCCHHHHHHHHHHhhcCC--------CCCCCCCCCCHHHHHHHHHHHHhccCCCCCH-hHEEE
Confidence 356677766654 2678888888887764310 011122344557888888877 3 334 48999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHH-HHHcCCeEEEEeCCCC--CCCCHHHHHHhhc--CCc
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-AQKTGANLKFLNLNDD--ESPDLDKLKEMLS--RKT 209 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~--~~~ 209 (458)
|+|+++++.+++. + +++||.|++++|+|+.. ... ....|++++.++++++ +.+|+++|++.+. +++
T Consensus 102 t~G~~~al~~~~~-l----~~~Gd~Vlv~~P~Y~~~----~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~ 172 (433)
T PRK06855 102 FNGLGDAIAKIYG-L----LRREARVIGPSPAYSTH----SSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSI 172 (433)
T ss_pred cCcHHHHHHHHHH-h----cCCCCeEEEeCCCCchH----HHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCc
Confidence 9999999999885 5 57999999999999952 222 2345888898988743 4689999999986 357
Q ss_pred eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCC---CCCCCCcEEEecccCCCCCCc--e
Q 012718 210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVD---VQGLDADFLVASSHKMCGPTG--I 277 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~---~~~~~~d~~~~s~~K~~gp~g--~ 277 (458)
+++++++|+||||.+++ +++|+++|+++|++||+|++|+.-. .+.. +..-+..+++.|+||.++.+| +
T Consensus 173 ~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRi 252 (433)
T PRK06855 173 AGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRC 252 (433)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceE
Confidence 89999999999999999 6678889999999999999997321 1112 211124588999999998777 9
Q ss_pred eEEEEec----c-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-HHhCHHHHHHHHHH
Q 012718 278 GFLFGKS----D-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-STIGMQKIHAYEME 351 (458)
Q Consensus 278 G~l~~~~----~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~g~~~~~~~~~~ 351 (458)
||+++++ . +.+.+.....- .....+ ++...+.++..+++.- .+.-+++.++.+++
T Consensus 253 G~ii~p~~~~~~~~~~~~~~~~~~------------------~~~~~~-~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~ 313 (433)
T PRK06855 253 GWIEVYNADKDEVFKKYINSILNA------------------KMIEVC-STTLPQMAIPRIMSHPEYKNYLKERNKRYEK 313 (433)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHh------------------hccccC-CChHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence 9999842 1 11111111000 001112 3333444444444311 01125677888889
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC----------------------------ChHHHHHHHhhhc
Q 012718 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI----------------------------HPTDIATLLDQQY 403 (458)
Q Consensus 352 l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------------------~~~~~~~~l~~~~ 403 (458)
+++.+.+.|++++++.+..+.. +.++|+++++. +..+++..+.++.
T Consensus 314 r~~~~~~~L~~~~~~~~~~p~g------g~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (433)
T PRK06855 314 RSNIAYEKLKDVPGLKVNRTNG------AFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLAST 387 (433)
T ss_pred HHHHHHHHHhcCCCeeccCCCe------eEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHc
Confidence 9999999998877777654431 55889988742 2445665554444
Q ss_pred CeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 404 GVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 404 gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
||.+.||..+... ...+|||++. .+.+++++.+++|.+++++.
T Consensus 388 gV~v~PG~~F~~~-------~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 388 GICVVPLSSFCTE-------LNGFRVTLLE-RDEEKFEWIYQTLAEKIEEY 430 (433)
T ss_pred CEEEecCCcCCCC-------CCceEEEECC-CcHHHHHHHHHHHHHHHHHH
Confidence 9999999865321 3459999986 57899999999999998753
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-28 Score=235.83 Aligned_cols=337 Identities=16% Similarity=0.163 Sum_probs=239.4
Q ss_pred CCCeEEecCCC-CC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 65 SKKLVYLDNAA-TS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 65 ~~~~i~l~~~~-~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
++++++|..+. .+ +.++.+.+++.+.+....... .......+..+..+++++.+++++|.+ +.|++|+| ++++
T Consensus 41 g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~--~~~~~~~G~~~l~~~l~~~la~~~g~~--~~i~~tsG-~~a~ 115 (397)
T PRK06939 41 GKEVINFCANNYLGLANHPELIAAAKAALDSHGFGM--ASVRFICGTQDLHKELEEKLAKFLGTE--DAILYSSC-FDAN 115 (397)
T ss_pred CCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCC--cccccccCCcHHHHHHHHHHHHHhCCC--cEEEEcCh-HHHH
Confidence 46678887665 34 367888999888876532110 111111123556778999999999975 36777776 7788
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEec
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHH 216 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~ 216 (458)
..++.++ +++||.|+++++.|++... .++..|++++.++. .|++++++.+++ ++++|++++
T Consensus 116 ~~~~~~l----~~~gd~vi~~~~~~~~~~~----~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~ 182 (397)
T PRK06939 116 GGLFETL----LGKEDAIISDALNHASIID----GVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDG 182 (397)
T ss_pred HHHHHHh----CCCCCEEEEEhhhhHHHHH----HHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEec
Confidence 8888877 7899999999999996543 34455888877764 378888887753 678899999
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC------CCC--CCCcEEEecccCCCCCCceeEEEEeccccc
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD------VQG--LDADFLVASSHKMCGPTGIGFLFGKSDLLS 288 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~------~~~--~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~ 288 (458)
+.|++|...++++|.++|+++|+++|+|++|+.|..... ... .++|++++|+||++++..+||+++++++++
T Consensus 183 v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~~~~ 262 (397)
T PRK06939 183 VFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEVID 262 (397)
T ss_pred CcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHHHHH
Confidence 999999999999999999999999999999976543211 111 247899999999774334699999988776
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+......+ ...++++.....++.++++.+.. .++++++++++++++.+.|+++ ++++
T Consensus 263 ~l~~~~~~~-------------------~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-~~~~ 320 (397)
T PRK06939 263 WLRQRSRPY-------------------LFSNSLAPAIVAASIKVLELLEE--SDELRDRLWENARYFREGMTAA-GFTL 320 (397)
T ss_pred HHHHhCccc-------------------cccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCc
Confidence 664321100 01234444445566667777654 3577888999999999999887 6654
Q ss_pred eCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
..+. ++++.+.++. .+..++.+.|.++ ||.+.++.+...+ ...+++|++++.+++++|+++++++|
T Consensus 321 ~~~~-------~~~~~~~~~~~~~~~~~~~~L~~~-gI~v~~~~~~~~~-----~~~~~iRi~~~~~~~~~~i~~~l~~L 387 (397)
T PRK06939 321 GPGE-------HPIIPVMLGDAKLAQEFADRLLEE-GVYVIGFSFPVVP-----KGQARIRTQMSAAHTKEQLDRAIDAF 387 (397)
T ss_pred CCCC-------CCEEEEEECCHHHHHHHHHHHHHC-CceEeeeCCCCCC-----CCCceEEEEECCCCCHHHHHHHHHHH
Confidence 3322 5565555543 3467899999998 9998754322111 11468999999889999999999999
Q ss_pred HHHHHhh
Q 012718 448 NETVSFF 454 (458)
Q Consensus 448 ~~~~~~~ 454 (458)
.+++++.
T Consensus 388 ~~~~~~~ 394 (397)
T PRK06939 388 EKVGKEL 394 (397)
T ss_pred HHHHHHh
Confidence 9998764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=234.85 Aligned_cols=340 Identities=18% Similarity=0.174 Sum_probs=241.3
Q ss_pred CCCeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 65 SKKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 65 ~~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
++++++|..+.. + ..++.+.+++.+.++++..+. +.....+...+...++++.|+++++.+ +.|++++|++ ++
T Consensus 108 G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~--~g~r~~yg~~~~~~~Lee~La~~~~~~--~~i~~s~G~~-a~ 182 (481)
T PLN02822 108 GKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGS--CGPRGFYGTIDVHLDCETKIAKFLGTP--DSILYSYGLS-TI 182 (481)
T ss_pred CceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCC--cccCccccCHHHHHHHHHHHHHHhCCC--CEEEECCHHH-HH
Confidence 466777765533 3 468889999999998764321 111112345777889999999999975 3788887776 67
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc---------CCc-eEE
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS---------RKT-KLV 212 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~---------~~~-~~v 212 (458)
..++.++ .++||.|++....|.+.. ......|.+++.++.+ |.+.++..++ +++ ++|
T Consensus 183 ~sai~a~----~~~gd~Ii~d~~~H~s~~----~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~I 249 (481)
T PLN02822 183 FSVIPAF----CKKGDIIVADEGVHWGIQ----NGLYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYI 249 (481)
T ss_pred HHHHHHh----CCCCCEEEEeCCccHHHH----HHHHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEE
Confidence 7788777 789999998877666442 2334458889988866 4444444332 234 799
Q ss_pred EEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCccc---------CCCCCCCCcEEEecccCCCCCCceeEEEEe
Q 012718 213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGK 283 (458)
Q Consensus 213 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~ 283 (458)
+++.+++++|.+.|+++|.++|++||+++|+|++|++|.+. +++....+|++++|++|.+|+.| |+++++
T Consensus 250 vve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G-G~i~g~ 328 (481)
T PLN02822 250 VVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG-GFCTGS 328 (481)
T ss_pred EEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC-eEEEcC
Confidence 99999999999999999999999999999999999966532 22222358999999999888777 899999
Q ss_pred ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 284 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+++++.+.....++ .| .++.+.....+..++++.+.. .+.+.++++++.+++.+.|++.
T Consensus 329 ~~ii~~~~~~~~~~------------------~f-sa~lPp~~~~Aa~~aL~~l~~--~~~~~~~l~~~~~~l~~~L~~~ 387 (481)
T PLN02822 329 ARVVDHQRLSSSGY------------------VF-SASLPPYLASAAITAIDVLED--NPSVLAKLKENIALLHKGLSDI 387 (481)
T ss_pred HHHHHHHHhcCCce------------------ee-ccccCHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHhc
Confidence 88776654221111 12 122233334444467776654 2678899999999999999987
Q ss_pred CCEEEeCCCCCCcCccccEEEEEeCCC------C---hHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC
Q 012718 364 PNIRIYGPKPSEHVQRAALCSFNVENI------H---PTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHF 433 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~~~------~---~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~ 433 (458)
+++++..+.. ++++++.+++. + ..++++.|. ++ ||.+.++.+..... ...+..+|++++.
T Consensus 388 ~g~~~~~~~~------spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~-GV~v~~~~~~~~~~---~~~~~~lRi~is~ 457 (481)
T PLN02822 388 PGLSIGSNTL------SPIVFLHLEKSTGSAKEDLSLLEHIADRMLKED-SVLVVVSKRSTLDK---CRLPVGIRLFVSA 457 (481)
T ss_pred CCcccCCCCC------CCEEEEEeCCCcccccchHHHHHHHHHHHHhcC-CEEEEeeCCCCcCC---CCCCCcEEEEECC
Confidence 7877754432 77888888642 1 256888887 66 99998764321110 0114579999998
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 012718 434 YNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+|++||++++++|+++++++
T Consensus 458 ~~t~edI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 458 GHTESDILKASESLKRVAASV 478 (481)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998875
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=238.53 Aligned_cols=338 Identities=17% Similarity=0.187 Sum_probs=226.8
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc------CCCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~v~~t~g~ 138 (458)
++.+.|+.+... ++++.+.+++.+.+.....+. . ..++.......++|+++|+++ +++++ +|++|+|+
T Consensus 34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I~it~Ga 108 (409)
T PRK07590 34 AKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAE--T--FRGYGPEQGYDFLREKIAENDYQARGCDISAD-EIFISDGA 108 (409)
T ss_pred CceEEecCcCCCCCCCHHHHHHHHHHHhcccccC--C--ccCCCCCCCCHHHHHHHHHHHHHhcCCcCChh-hEEECCCH
Confidence 567889888766 567778888888876532110 0 011112334557888888876 45554 99999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCe-----------EEEEeCCCCCCCCHHHHHHhhcC
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-----------LKFLNLNDDESPDLDKLKEMLSR 207 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~-----------~~~v~~~~~~~~d~~~l~~~l~~ 207 (458)
++++.++.. + +++||+|++++|+|+. +...++..|.+ ++.+++++++.+.++ +. ..
T Consensus 109 ~~al~~l~~-~----~~~gd~V~v~~P~Y~~----~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d-~~---~~ 175 (409)
T PRK07590 109 KCDTGNILD-I----FGPDNTIAVTDPVYPV----YVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPE-LP---EE 175 (409)
T ss_pred HHHHHHHHH-h----cCCCCEEEEeCCCCcc----hHHHHHHcCCcccccccccccceeEeecccccCCccc-Cc---cc
Confidence 999998654 3 5799999999999994 45666777886 888988744322222 11 25
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccC----CcccCCC---CCC-CCcEEEecccCCCCCCc
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSV----PHMVVDV---QGL-DADFLVASSHKMCGPTG 276 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~----g~~~~~~---~~~-~~d~~~~s~~K~~gp~g 276 (458)
++++|++++|+||||.+++ +++|+++|+++|++||+|++|.. +..+..+ ... +..++++|+||.+|.+|
T Consensus 176 ~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pG 255 (409)
T PRK07590 176 KVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTG 255 (409)
T ss_pred CceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcC
Confidence 7899999999999999999 56788889999999999999872 1111112 221 24578899999998777
Q ss_pred --eeEEEEeccccccCCCc-----cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 012718 277 --IGFLFGKSDLLSAMPPF-----LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349 (458)
Q Consensus 277 --~G~l~~~~~~~~~l~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 349 (458)
+||+++++++++.+... ..-+... ......+.+.....++..++..-....+++.++.+
T Consensus 256 lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~--------------~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~ 321 (409)
T PRK07590 256 TRCAYTVVPKELKGKTSDGEGVSLNSLWNRR--------------QSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYY 321 (409)
T ss_pred ceeEEEEcCHHHhhhccccchhhhHHHHHHH--------------HhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999998877532100 0000000 00001123333444444444311111256677888
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEE
Q 012718 350 MELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR 428 (458)
Q Consensus 350 ~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lR 428 (458)
++.++++.+.|++. ++++..+. .+.++|+++++ .+..++.+.+.++.||.+.+|..+.. ...+++|
T Consensus 322 ~~~r~~l~~~L~~~-~~~~~~~~------g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~------~~~~~iR 388 (409)
T PRK07590 322 MENAKIIREGLESA-GFEVYGGV------NAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGP------SGEGYFR 388 (409)
T ss_pred HHHHHHHHHHHHhc-CCceecCC------cceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCC------CCCCEEE
Confidence 88899999999887 66665443 15689999974 45678888776545999999875421 1157999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHH
Q 012718 429 ASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 429 is~~~~~t~~di~~l~~~l~~~ 450 (458)
|++. .+.+++++++++|.++
T Consensus 389 i~~~--~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 389 LSAF--GSRENVLEAMERIKKA 408 (409)
T ss_pred EEcc--CCHHHHHHHHHHHHhh
Confidence 9964 5889999999998765
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=235.34 Aligned_cols=324 Identities=17% Similarity=0.200 Sum_probs=223.9
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
.+.|..+..+.+++.+.+++.+. .. .. ..+.. .....++++++++++|.+ .++++++|++++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~a~~~~--~~--~~--~~~~~----~~~~~~l~~~la~~~~~~---~~~~~~~Gs~a~~~~l~ 73 (353)
T PLN02721 7 VVDLRSDTVTKPTDAMRAAMANA--EV--DD--DVLGY----DPTALRLEEEMAKIFGKE---AALFVPSGTMGNLISVL 73 (353)
T ss_pred hhhhhcccccCCCHHHHHHHHhc--cC--CC--cccCC----CHHHHHHHHHHHHHhCCc---eeEEecCccHHHHHHHH
Confidence 45666666666778888887543 11 10 11111 122568999999999986 46777778888777777
Q ss_pred HcCCCCCC-CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc-------CCceEEEEecc-c
Q 012718 148 SWGLSNLK-SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-------RKTKLVVIHHI-S 218 (458)
Q Consensus 148 ~l~~~~~~-~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-------~~~~~v~~~~~-~ 218 (458)
++ .+ +||+|++++++|.+.... ...+...|++++.++.++++.+|++.+++.++ +++++|+++++ +
T Consensus 74 ~~----~~~~gd~Vl~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~ 148 (353)
T PLN02721 74 VH----CDVRGSEVILGDNSHIHLYEN-GGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHA 148 (353)
T ss_pred HH----ccCCCCeEEEcCccceehhcc-cchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEecccc
Confidence 65 44 899999999998754321 01456679999999988888899999999997 57899998775 6
Q ss_pred CcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCC--CCCCcEEEecccCCCCCCceeEEEEeccccccC
Q 012718 219 NMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQ--GLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM 290 (458)
Q Consensus 219 n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~--~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l 290 (458)
||+|.++| +++|.++|+++|+++|+|++|..+.. ..+.. ..+.|+++.|+||++++...++++.++++++.+
T Consensus 149 np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~ 228 (353)
T PLN02721 149 NCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKA 228 (353)
T ss_pred ccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHHHHHhH
Confidence 77899888 67999999999999999999875531 11111 225889999999977754334566777776654
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE-e
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI-Y 369 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~-~ 369 (458)
......+ .++++.....+. +++..+... .+++ ++..++.+++.+.|++++++++ .
T Consensus 229 ~~~~~~~---------------------~~~~~~~~~~~~-~~~~~l~~~-~~~~-~~~~~~~~~l~~~L~~~~~~~~~~ 284 (353)
T PLN02721 229 KRLRKTL---------------------GGGMRQVGVLAA-AALVALQEN-VPKL-EDDHKKAKLLAEGLNQIKGLRVNV 284 (353)
T ss_pred HHHHHhc---------------------CCCeehhHHHHH-HHHHHHHHH-HHHH-HHHHHHHHHHHHHHHhCCCcEEec
Confidence 4322110 011111111211 122222221 2222 3335678899999998878765 3
Q ss_pred CCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHA 446 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~ 446 (458)
.++ .+++++++++. .+..++.+.|.++ ||.++++. .+++|++++++++++|+++++++
T Consensus 285 ~~~------~~~~~~~~~~~~~~~~~~~~~~~L~~~-gi~v~~~~------------~~~lR~~~~~~~~~~~i~~~~~~ 345 (353)
T PLN02721 285 AAV------ETNIVYFDITDGSRITAEKLCKSLEEH-GVLLMPGN------------SSRIRVVTHHQISDSDVQYTLSC 345 (353)
T ss_pred CCc------cceEEEEEccCCccccHHHHHHHHHhC-CcEEecCC------------CceEEEEecCcCCHHHHHHHHHH
Confidence 332 16688888864 4678899999977 99998764 56899999988999999999999
Q ss_pred HHHHHH
Q 012718 447 LNETVS 452 (458)
Q Consensus 447 l~~~~~ 452 (458)
|++++.
T Consensus 346 l~~~~~ 351 (353)
T PLN02721 346 FQQAAL 351 (353)
T ss_pred HHHHhh
Confidence 998765
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=234.61 Aligned_cols=338 Identities=16% Similarity=0.173 Sum_probs=232.5
Q ss_pred CCeEEecCC-CCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNA-ATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+.+++|..+ ..| ..++.+.+++.+.+.++.... +.....+...+...++++.+|+++|.+ ..++.++|++|+.
T Consensus 46 ~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~--~~s~~~~g~~~~~~~l~~~la~~~g~~---~~~~~~sG~~an~ 120 (407)
T PRK09064 46 REVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGA--GGTRNISGTNHYHVELERELADLHGKE---AALVFTSGYVSND 120 (407)
T ss_pred ceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCC--CCcCcCccCHHHHHHHHHHHHHHhCCC---cEEEECcHHHHHH
Confidence 445666544 334 346779999999887753322 111111223566788999999999953 4455566777888
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc----CCceEEEEecccC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHISN 219 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~n 219 (458)
.++..+. ...+++.|+.....|.+...++ +..|+++..++.. |++++++.++ +++++|++++++|
T Consensus 121 ~ai~~l~--~~~~~~~i~~~~~~h~s~~~~~----~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~~v~~~~v~s 189 (407)
T PRK09064 121 ATLSTLA--KLIPDCVIFSDELNHASMIEGI----RRSRCEKHIFRHN-----DVAHLEELLAAADPDRPKLIAFESVYS 189 (407)
T ss_pred HHHHHHh--CCCCCCEEEEeCcchHHHHHHH----HHcCCcEEEECCC-----CHHHHHHHHHhccCCCCeEEEEeCCCC
Confidence 7777653 1346666666655565543333 3357777666543 7778877775 4678999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcc-cC-----CCCC--CCCcEEEecccCCCCCCceeEEEEeccccccCC
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-VV-----DVQG--LDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~-----~~~~--~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~ 291 (458)
++|.+.|+++|.++|+++|+++|+|++|+.|.. +. .... ..+|++++|++|.+|+.| |+++.++++++.+.
T Consensus 190 ~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~~~~~~~~~~~l~ 268 (407)
T PRK09064 190 MDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG-GYIAGSAALVDAVR 268 (407)
T ss_pred CCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC-ceEecCHHHHHHHH
Confidence 999999999999999999999999999985532 11 1111 246899999999988776 88888887766543
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
....++ .+. .+.+....+++.++++++.+. ...++++.++.+++.+.|+++ ++++..+
T Consensus 269 ~~~~~~------------------~~t-~~~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 326 (407)
T PRK09064 269 SYAPGF------------------IFT-TSLPPAIAAAALASIRHLKES--NEERERHQERAAKLKAALDAA-GIPVMPN 326 (407)
T ss_pred HhCccc------------------ccc-CcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCCCCC
Confidence 221110 112 234445556666788887764 445688889999999999886 7665443
Q ss_pred CCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
. ++++.+.+++ ....++.+.|.+++||.+++..+...+. ....+||+++.+++.+|++++++.|+++
T Consensus 327 ~-------~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~-----~~~~lRis~~~~~t~edi~~l~~~l~~~ 394 (407)
T PRK09064 327 E-------SHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPR-----GTERLRITPTPFHTDEMIDHLVEALVEV 394 (407)
T ss_pred C-------CCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCC-----CCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 2 6677777754 2356788887654499998643221110 1367999999999999999999999999
Q ss_pred HHhh
Q 012718 451 VSFF 454 (458)
Q Consensus 451 ~~~~ 454 (458)
++++
T Consensus 395 ~~~~ 398 (407)
T PRK09064 395 WARL 398 (407)
T ss_pred HHHc
Confidence 8764
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=248.17 Aligned_cols=315 Identities=18% Similarity=0.224 Sum_probs=239.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh----HHHHHHHHHcCCCCCCC-CC----EEEEcCCCCccchHHHHHH
Q 012718 107 AKATDEYELARKKVAAFINASDSGEIVFTKNAT----EAINLVAYSWGLSNLKS-GD----EVILTVAEHHSAIVPWQLV 177 (458)
Q Consensus 107 ~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t----~a~~~~~~~l~~~~~~~-g~----~vl~~~~~~~s~~~~~~~~ 177 (458)
.+..+.+.++++.+++++|.+ +|+|++++| +++++++.++ .++ || .|+++..+|+++..+|..
T Consensus 564 ~g~~~~~~~~r~~la~i~g~~---~v~f~pnaga~ge~a~~~vi~~~----~~~~Gd~~r~~vli~~~aH~sn~a~a~~- 635 (993)
T PLN02414 564 QGYQEMFEDLGDLLCEITGFD---SFSLQPNAGAAGEYAGLMVIRAY----HLSRGDHHRNVCIIPVSAHGTNPASAAM- 635 (993)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---eEEEcCCCcHHHHHHHHHHHHHH----HhccCCCCCCEEEeCCCcCccCHHHHHH-
Confidence 346778889999999999994 999999999 9999999998 333 66 899999999999766654
Q ss_pred HHHcCCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc-c
Q 012718 178 AQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-V 253 (458)
Q Consensus 178 a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~ 253 (458)
.|++++.++.+++|.+|+++|++++++ ++++|++++++|.+|...|+++|.++||++|+++++|+++..+.. .
T Consensus 636 ---~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l 712 (993)
T PLN02414 636 ---CGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGL 712 (993)
T ss_pred ---CCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCc
Confidence 599999999998999999999999985 789999999999999999999999999999999999999998874 3
Q ss_pred CCCCCCCCcEEEecccC-CCCCC-----ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccC---CCCCCH
Q 012718 254 VDVQGLDADFLVASSHK-MCGPT-----GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFE---AGTPAI 324 (458)
Q Consensus 254 ~~~~~~~~d~~~~s~~K-~~gp~-----g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~gt~~~ 324 (458)
.+..++|+|++++|.|| +++|. |+|++++++.+...+. |+...... .+ ..++. .||.+.
T Consensus 713 ~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lP----g~~v~~~~-----~~---~~r~~~s~iGt~~~ 780 (993)
T PLN02414 713 TSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP----SHPVVPTG-----GI---PRPEKTQPLGTISA 780 (993)
T ss_pred CCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCC----CCccccCC-----Cc---ccccCCCCcCCccc
Confidence 45678999999999999 55454 4999999996655544 33211100 00 11222 466444
Q ss_pred ---HHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE-eC---CCChHH
Q 012718 325 ---GEAIGLGAAIDYLSTIG---MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN-VE---NIHPTD 394 (458)
Q Consensus 325 ---~~~~~l~~al~~~~~~g---~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~-~~---~~~~~~ 394 (458)
.+...+..++.++...| +.++.++...+++|+.+.|.+..++.+..+... ..+-.++.+. ++ +.+..+
T Consensus 781 a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~--~~hEfv~~~~~l~~~~g~~~~d 858 (993)
T PLN02414 781 APWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGT--CAHEFIIDLRPFKNTAGIEPED 858 (993)
T ss_pred hhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCC--eeeeEEEeccccccccCCCHHH
Confidence 34466667777766655 555589999999999999987544444332210 1112223332 22 356688
Q ss_pred HHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 395 IATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 395 ~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+.++|.+. ||.....+ +...+.+||+++.+++.+|+|+++++|..+..++.+
T Consensus 859 i~krL~d~-Gihapt~~---------~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 859 VAKRLMDY-GFHAPTMS---------WPVPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred HHHHHHHc-CcEEeeec---------cccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999965 99764322 123789999999999999999999999999988765
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=231.31 Aligned_cols=324 Identities=15% Similarity=0.136 Sum_probs=218.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH----cC--CCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF----IN--ASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~g--~~~~~~v~~t~g~ 138 (458)
.+++.|+.+... +.|+.+.+++.+.......++ ......++|++++++ .| +++ ++|++|+|+
T Consensus 24 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~----------~~~G~~~lr~aia~~l~~~~g~~~~~-~~I~it~G~ 92 (374)
T PRK05839 24 YKGLDLTIGEPQFETPKFIQDALKNNAHLLNKYP----------KSAGEESLREAQRGFFKRRFKIELKE-NELIPTFGT 92 (374)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHhhccCCCC----------CCCCCHHHHHHHHHHHHHHhCCCCCc-ceEEEecCc
Confidence 588999988766 567777777766543221111 112223555555544 46 344 499999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
++++..++.++. .-++||.|+++.|+|+. +...++..|++++.++.+++ +.+|+... .+ ++++++++++
T Consensus 93 ~~al~~~~~~~~--~~~~gd~vlv~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~-~~~k~v~i~n 163 (374)
T PRK05839 93 REVLFNFPQFVL--FDKQNPTIAYPNPFYQI----YEGAAIASRAKVLLMPLTKENDFTPSLNEK--EL-QEVDLVILNS 163 (374)
T ss_pred HHHHHHHHHHHh--cCCCCCEEEECCCCchh----hHHHHHhcCCEEEEeecccccCCcCCcchh--hh-ccccEEEEeC
Confidence 999999887651 01478999999999994 45566778999999999754 34444332 23 4689999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----cc--CCC------CCCCCcEEEecccCCCCCCc--eeE
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MV--VDV------QGLDADFLVASSHKMCGPTG--IGF 279 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~--~~~------~~~~~d~~~~s~~K~~gp~g--~G~ 279 (458)
|+||||.+++ +++|+++|+++|++||+|++|..-. .+ ... ...+..+++.|+||.||.+| +||
T Consensus 164 P~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ 243 (374)
T PRK05839 164 PNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGF 243 (374)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEE
Confidence 9999999999 6678888999999999999987311 11 110 12246688899999888777 999
Q ss_pred EEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 280 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++.++++++.+...... ...+++...+ .++..++.. +.-+++++++++++++++.+.
T Consensus 244 ii~~~~~~~~~~~~~~~--------------------~~~~~~~~~q-~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~ 300 (374)
T PRK05839 244 IAGDASILKKYKAYRTY--------------------LGCASPLPLQ-KAAAVAWLD--DEHAEFFRNIYAKNLKLAREI 300 (374)
T ss_pred EecCHHHHHHHHHHHhh--------------------cCCCCChHHH-HHHHHHhcc--chHHHHHHHHHHHHHHHHHHh
Confidence 99988877665432210 0112233323 333223321 222456677777777777776
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
| +.. .+. .+.++|++++ +..++.+.+.+++||.+.+|..+..+ -+.++++|||++ .+.++
T Consensus 301 l----~~~--~p~------gg~fi~~~~~--~~~~~~~~l~~~~gi~v~pg~~f~~~----~~~~~~iRis~~--~~~~~ 360 (374)
T PRK05839 301 L----GIT--IPP------ATFYVWLPVD--NDEEFTKKLYQNEGIKVLPGSFLGRN----GIGKGYVRIALV--YDTPK 360 (374)
T ss_pred c----CCC--CCC------eeEEEEEeCC--ChHHHHHHHHHHCCEEEeCchhhCCC----CCCCCeEEEEec--CCHHH
Confidence 5 222 121 2668999987 45788888876349999998744221 012589999998 47899
Q ss_pred HHHHHHHHHHHHH
Q 012718 440 VDEFIHALNETVS 452 (458)
Q Consensus 440 i~~l~~~l~~~~~ 452 (458)
+.+++++|.++++
T Consensus 361 ~~~~l~~l~~~l~ 373 (374)
T PRK05839 361 LEKALEIIKTYLE 373 (374)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998874
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-28 Score=237.26 Aligned_cols=339 Identities=19% Similarity=0.212 Sum_probs=225.8
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc---CCCCCCcEEEeCChhHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI---NASDSGEIVFTKNATEA 141 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---g~~~~~~v~~t~g~t~a 141 (458)
.+.+.|+.+... ++++.+.+++.+.+.+...... ..++.......++|+++|+++ +++++ +|++|+|++++
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~Y~p~~g~~~lr~aia~~~~~~~~~~d-~I~it~Ga~~a 107 (402)
T TIGR03542 33 ADIIRLGIGDTTQPLPASVIEAFHNAVDELASEET----FRGYGPEQGYPFLREAIAENDYRGRIDPE-EIFISDGAKCD 107 (402)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhccccccc----ccCCCCCCCCHHHHHHHHHHHHhcCCCHH-HEEECCCcHHH
Confidence 678999988776 5678888888888765311100 011112345568889999876 56665 99999999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCC-----------eEEEEeCCCCCCCCHHHHHHhhcCCce
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-----------NLKFLNLNDDESPDLDKLKEMLSRKTK 210 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~-----------~~~~v~~~~~~~~d~~~l~~~l~~~~~ 210 (458)
+..+.. + +.+||+|++++|+|. .+...++..|+ +++.++.++++.++++ +.+ ..+++
T Consensus 108 l~~l~~-l----~~~gd~Vlv~~P~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~--~~~~~ 175 (402)
T TIGR03542 108 VFRLQS-L----FGSDNTVAVQDPVYP----AYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPD-LPE--EPKID 175 (402)
T ss_pred HHHHHH-h----cCCCCEEEEeCCCCc----chHHHHHHcCCccccccccccceEEEeecchhhCCCCC-ccc--cCCce
Confidence 998654 4 468999999999999 44666777899 9999988643222222 111 15789
Q ss_pred EEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCC----cccCCC---CC-CCCcEEEecccCCCCCCc--e
Q 012718 211 LVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVP----HMVVDV---QG-LDADFLVASSHKMCGPTG--I 277 (458)
Q Consensus 211 ~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g----~~~~~~---~~-~~~d~~~~s~~K~~gp~g--~ 277 (458)
+|++++|+||||.+++ +++|+++|+++|++||+|++|..- ..+..+ .. .+..+++.|+||.+|.+| +
T Consensus 176 ~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRi 255 (402)
T TIGR03542 176 IIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRL 255 (402)
T ss_pred EEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcce
Confidence 9999999999999999 778999999999999999999731 111222 21 124577899999998777 9
Q ss_pred eEEEEeccccccCC-CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDLLSAMP-PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYL 356 (458)
Q Consensus 278 G~l~~~~~~~~~l~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l 356 (458)
||++++++++.... .....+... ......+.+.....++...+..-......+..+.+++.++++
T Consensus 256 G~~i~~~~l~~~~~~~~~~~~~~~--------------~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (402)
T TIGR03542 256 GWTVVPKELTYADGHSVIQDWERR--------------QCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARIL 321 (402)
T ss_pred EEEEecHHHhhcchhhHHHHHHHH--------------hhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHH
Confidence 99999887652110 000000000 000011233333333333332100011344556777888889
Q ss_pred HHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 357 YENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 357 ~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
.+.|++. ++++..+. .+.++|++++. .+..++.+.+.++.||.+.+|..+.. ..++++||++. .
T Consensus 322 ~~~L~~~-~~~~~~~~------~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~------~~~~~iRis~~--~ 386 (402)
T TIGR03542 322 RKALEAA-GFKVYGGE------HAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGP------SGEGFVRFSAF--G 386 (402)
T ss_pred HHHHHhc-CceecCCC------ceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCC------CCCCEEEEEec--C
Confidence 9999886 66654432 26699999975 46678888877544999999874421 12579999976 4
Q ss_pred CHHHHHHHHHHHHHH
Q 012718 436 TKEDVDEFIHALNET 450 (458)
Q Consensus 436 t~~di~~l~~~l~~~ 450 (458)
+++++++.++.|.++
T Consensus 387 ~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 387 KRENIVEACERIKEA 401 (402)
T ss_pred CHHHHHHHHHHHHhh
Confidence 789999999998765
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=228.74 Aligned_cols=311 Identities=17% Similarity=0.219 Sum_probs=225.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+.++|+.+.++ ++|+.+.+++.+.+.....+ .+ . .....++|+++++++|++++ +|++|+|+++++..
T Consensus 18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~Y----~-~~g~~~lr~~ia~~~~~~~~-~I~~t~G~~~~l~~ 87 (337)
T PRK03967 18 NYRIWLDKNENPFDLPEELKEEIFEELKRVPFN----RY----P-HITSDPLREAIAEFYGLDAE-NIAVGNGSDELISY 87 (337)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHhhcCccc----cC----C-CCCHHHHHHHHHHHhCcCcc-eEEEcCCHHHHHHH
Confidence 467999999877 67788888888876431110 01 1 12346899999999998875 99999999999998
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++..+ +||.|+++.|+|+ .+..+++..|++++.++.++++.+|++.+++.+ ++++++++++|+||||.+
T Consensus 88 ~~~~~------~gd~V~v~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~ 156 (337)
T PRK03967 88 LVKLF------EGKHIVITPPTFG----MYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNL 156 (337)
T ss_pred HHHHh------CCCeEEEeCCChH----HHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCC
Confidence 88754 6899999999998 456667788999999999877888999998865 577889999999999999
Q ss_pred ccHHHHHHHHHhcCcEEEEeccccCCc--ccCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcc
Q 012718 225 LPIEEIVHWSHDVGAKVLVDACQSVPH--MVVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEM 299 (458)
Q Consensus 225 ~~l~~i~~l~~~~~~~vivD~a~~~g~--~~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~ 299 (458)
++.++|.++++ +++++|+|++|..-. .... .......+++.|+||.||.+| +||+++++++++.+......
T Consensus 157 ~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~~--- 232 (337)
T PRK03967 157 QPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKPP--- 232 (337)
T ss_pred CCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcCC---
Confidence 99999999995 799999999997211 1011 112235688899999999777 99999998877666533211
Q ss_pred eEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcc
Q 012718 300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQR 379 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~ 379 (458)
.+.+.....++..+++.... ..+..++..+.++.+.+.|.+. . .+. .
T Consensus 233 --------------------~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~r~~l~~~L~~~-~----~~~------~ 279 (337)
T PRK03967 233 --------------------FSLNILTMKIVRLALDHYDL--IEERIDYIIKERERVRRELGEY-A----YPS------D 279 (337)
T ss_pred --------------------CCCCHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHHHHhccC-c----CCC------C
Confidence 12334444444445542221 2333445556677788887654 1 121 2
Q ss_pred ccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 380 AALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 380 ~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+.++|++++ +.+.|.++ ||.++++.. +..+++|++++ +.++.++++++|+++.+.
T Consensus 280 ~~~~~~~~~------~~~~l~~~-gi~v~~~~~---------~~~~~~Ri~~~---~~~~~~~l~~~l~~~~~~ 334 (337)
T PRK03967 280 ANFLLLKLD------AYDYLLEN-GIVVRKLSG---------RLEGHIRVTVG---KREENDEFIKALKEIKEG 334 (337)
T ss_pred CcEEEEhHH------HHHHHHHC-CEEEEeCCC---------CCCCeEEEecC---CHHHHHHHHHHHHHHHHh
Confidence 667887653 77888887 999986431 12569999988 678899999999887653
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=231.60 Aligned_cols=335 Identities=20% Similarity=0.230 Sum_probs=236.7
Q ss_pred CCCeEEecCCC-CC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 65 SKKLVYLDNAA-TS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 65 ~~~~i~l~~~~-~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
+++++.|..+. .+ +.++.+.+++.+.+....... +.+....+..+..+++++.+++++|.+ +.+++++| ++++
T Consensus 32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~g~~~l~~~l~~~l~~~~g~~--~~i~~~sG-~~a~ 106 (385)
T TIGR01825 32 GKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGA--GAVRTIAGTLRLHEELEEKLAKFKKTE--AALVFQSG-FNTN 106 (385)
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCC--CccCcccCCcHHHHHHHHHHHHHhCCC--cEEEECcH-HHHH
Confidence 45667777654 45 377888888888876532111 111111223566778889999999864 25666655 6677
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC----CceEEEEeccc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHIS 218 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~ 218 (458)
..++.++ +++||.|+++++.|++.... ....|+++..++ .+|++++++.+.+ ++++|++++++
T Consensus 107 ~~a~~~~----~~~gd~vi~~~~~~~~~~~~----~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~ 173 (385)
T TIGR01825 107 QGVLSAL----LRKGDIVLSDELNHASIIDG----LRLTKATKKIYK-----HADMDDLDRVLRENPSYGKKLIVTDGVF 173 (385)
T ss_pred HHHHHHh----CCCCCEEEEEccccHHHHHH----HHhcCCceEEeC-----CCCHHHHHHHHHhhccCCCeEEEEecCC
Confidence 7777776 68999999999999865433 334577776654 3478888877653 67899999999
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEeccccCCccc---------CCCCCCCCcEEEecccCCCCCCceeEEEEecccccc
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~ 289 (458)
|+||.+.|+++|.++|++||+++|+|++|+.+..+ +++. .+.|+++.|+||.+|+.| |+++.+++.++.
T Consensus 174 ~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g-G~~~~~~~~~~~ 251 (385)
T TIGR01825 174 SMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVG-GYAAGHKELIEY 251 (385)
T ss_pred cCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCC-CEEecCHHHHHH
Confidence 99999999999999999999999999999865432 2232 468999999999888765 888888877665
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCC-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEA-GTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
+..... .+.. ++.+...+.++.++++.+.+. .+..++..++++++.+.|.++ ++++
T Consensus 252 ~~~~~~--------------------~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~ 308 (385)
T TIGR01825 252 LKNRAR--------------------PFLFSTAQPPAVVAALAAAVDELQRS--PELMERLWDNTRFFKAGLGKL-GYDT 308 (385)
T ss_pred HHHhCc--------------------cccccCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCC
Confidence 532111 1111 234555667777778766542 356777788899999999886 7766
Q ss_pred eCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
..+. ++++.+.++. .+..++.+.|.++ ||.++.+.+...+ .....+|++++.+++++|+++++++|
T Consensus 309 ~~~~-------~~~~~~~~~~~~~~~~~~~~L~~~-gi~v~~~~~~~~~-----~~~~~iRi~~~~~~~~e~i~~~~~~l 375 (385)
T TIGR01825 309 GGSE-------TPITPVVIGDEKAAQEFSRRLFDE-GIFAQSIVFPTVP-----RGTARIRNIPTAEHTKDDLDQALDAY 375 (385)
T ss_pred CCCC-------CCEEEEEECCHHHHHHHHHHHHHC-CcEEcccCCCCCC-----CCCceEEEEEcCCCCHHHHHHHHHHH
Confidence 5433 4566666543 2356788999988 9998644332111 11468999999889999999999999
Q ss_pred HHHHHhhh
Q 012718 448 NETVSFFN 455 (458)
Q Consensus 448 ~~~~~~~~ 455 (458)
++++++..
T Consensus 376 ~~~~~~~~ 383 (385)
T TIGR01825 376 EKVGKELG 383 (385)
T ss_pred HHHHHHhC
Confidence 99987543
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=230.32 Aligned_cols=279 Identities=15% Similarity=0.155 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC
Q 012718 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND 192 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~ 192 (458)
..++|+++++++|.++. +|++|+|+++++.+++. + +++|+ |++.+|+|. .+...++..|++++.+|+++
T Consensus 42 ~~~lr~~ia~~~~~~~~-~I~it~Gs~~~l~~~~~-~----~~~~~-vv~~~P~y~----~y~~~~~~~G~~v~~vp~~~ 110 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKI-KVLIGPGLTHFIYRLLS-Y----INVGN-IIIVEPNFN----EYKGYAFTHGIRISALPFNL 110 (332)
T ss_pred HHHHHHHHHHHhCCCcc-eEEECCCHHHHHHHHHH-H----hCCCc-EEEeCCChH----HHHHHHHHcCCeEEEEeCCc
Confidence 34899999999999876 89999999999999987 3 35664 666699998 66778888999999999875
Q ss_pred CCCCCHHHHHHhhcCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----c-CC-CCCCCCcE
Q 012718 193 DESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----V-VD-VQGLDADF 263 (458)
Q Consensus 193 ~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~-~~-~~~~~~d~ 263 (458)
...|.+.+++ .+++++++++|+||||.+++ +++|+++|+++|++||+|++|.--.. + .. ....+..+
T Consensus 111 -~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi 186 (332)
T PRK06425 111 -INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVI 186 (332)
T ss_pred -ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEE
Confidence 3346555542 37889999999999999999 56778888999999999999872211 1 11 12234678
Q ss_pred EEecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 264 LVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 264 ~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
++.|+||.+|.+| +||+++++++++.+......+ +.+......+. ... ... -
T Consensus 187 ~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~~~-----------------------~~~~~~~~~l~-~~~-~~~-~ 240 (332)
T PRK06425 187 IGRSLTKILGIPSLRIGYIATDDYNMKISRKITEPW-----------------------SVCDPAIDFIR-SID-LDY-V 240 (332)
T ss_pred EEeecHHhcCCchhhheeeecCHHHHHHHHHcCCCC-----------------------ccCHHHHHHHH-Hhh-hHH-H
Confidence 8899999999777 899999998877665432211 11111111111 111 111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhc
Q 012718 342 MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~ 421 (458)
+++.++.+++.++++.+.|+++ ++++..++ . +++++++++ +..++.+.|.++ ||.++++..+..
T Consensus 241 ~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~-~-----g~f~~~~~~--~~~~~~~~l~~~-gi~v~~~~~f~~------ 304 (332)
T PRK06425 241 AKHSLDIMENERSYLINNLEAM-GFRAAGDP-S-----ANFITFMIP--DAHDFYSYLLKN-GILVRLLDDYEC------ 304 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCEECCCC-C-----ceEEEEEcC--CHHHHHHHHHHC-CeEEEECCCCCC------
Confidence 3466778888899999999887 77765333 1 678999887 578899999988 999999874421
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
..++++||+++ +.++.++++++|++++
T Consensus 305 ~~~~~iRis~~---~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 305 LGEQYIRIAIR---RRSFNIKLVNALRNFL 331 (332)
T ss_pred CCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 11579999999 6799999999999775
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-27 Score=243.17 Aligned_cols=331 Identities=17% Similarity=0.166 Sum_probs=242.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC--CcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS--GEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~~v~~t~g~t~a~ 142 (458)
.+++.|+.+... ++|+.+.+++.+.+...+. .. ...+..+.+++.+++..|.+.+ ++|++++|+++++
T Consensus 697 ~~vI~LsinE~d~ppPp~V~eAi~eal~~~~~--s~-------g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL 767 (1082)
T PLN02672 697 SSLIHMDVDESFLPVPSAVKASIFESFVRQNI--SE-------SETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALF 767 (1082)
T ss_pred CCEEEEeCCCCCCCCCHHHHHHHHHHHhhcCC--CC-------CChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHH
Confidence 678999998777 7888999999887654211 00 1133456788899998888753 4899999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcC-CceEEEEeccc-
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSR-KTKLVVIHHIS- 218 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~-~~~~v~~~~~~- 218 (458)
..++.++ +++||.|+++.|+|+ .+...++..|++++.+|+++ ++.+|++.+++++++ ..+++++++|+
T Consensus 768 ~lll~aL----l~pGD~VLVp~PtY~----~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnh 839 (1082)
T PLN02672 768 NKLVLCC----VQEGGTLCFPAGSNG----TYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTI 839 (1082)
T ss_pred HHHHHHH----cCCCCEEEEeCCChH----HHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCC
Confidence 9999888 789999999999999 56777788899999999874 367888999999876 44688888886
Q ss_pred CcCccccc---HHHHHHHHHhcCcEEEEeccccC----Ccc--cCCC-------CC---CCCcEEEecccCCCCCCc--e
Q 012718 219 NMLASILP---IEEIVHWSHDVGAKVLVDACQSV----PHM--VVDV-------QG---LDADFLVASSHKMCGPTG--I 277 (458)
Q Consensus 219 n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~----g~~--~~~~-------~~---~~~d~~~~s~~K~~gp~g--~ 277 (458)
||||.+++ +++|+++|++||++||+|++|+. +.. +.++ .. ....++++|+||.++.+| +
T Consensus 840 NPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRI 919 (1082)
T PLN02672 840 NPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEF 919 (1082)
T ss_pred CCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHh
Confidence 99999999 67888899999999999999971 111 0111 11 113578889999888888 9
Q ss_pred eEEEEecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH------hCHHHHHHHHH
Q 012718 278 GFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST------IGMQKIHAYEM 350 (458)
Q Consensus 278 G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~------~g~~~~~~~~~ 350 (458)
||++++++ +++.+..... ...+......++.+++..+.. ..+.+.++.++
T Consensus 920 GylIap~~eLi~~l~~~~~-----------------------~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk 976 (1082)
T PLN02672 920 GFLALNDSVLIDAFHSAPG-----------------------LSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILK 976 (1082)
T ss_pred eeEEeCCHHHHHHHHHhhh-----------------------hcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 99999764 6665543211 011111223333333332210 12456677788
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC------------------CCChHHHHHHHhhhcCeEeccCCC
Q 012718 351 ELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE------------------NIHPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 351 ~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------------~~~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
+.++++.+.|++. ++++..+.. +.++|++++ +.+..++.+.|.++.||.+.+|..
T Consensus 977 ~rRd~L~e~L~~~-Gi~v~~PeG------GFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~ 1049 (1082)
T PLN02672 977 SRAERLKETLEAC-GWDVLEPQG------GISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSW 1049 (1082)
T ss_pred HHHHHHHHHHHHC-CCeEecCCc------EEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcc
Confidence 9999999999987 777765541 446666542 235678998888766999999964
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+ |.++++||+++ .+.+++++++++|.++.+-
T Consensus 1050 F--------G~~g~~RIsfa--~~~e~LeeALerL~kf~~~ 1080 (1082)
T PLN02672 1050 T--------GIPGYCRFSFA--LEDSEFDRALKAIARFKEL 1080 (1082)
T ss_pred c--------CCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 3 45789999999 5888999999999987653
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=231.56 Aligned_cols=334 Identities=18% Similarity=0.176 Sum_probs=234.0
Q ss_pred EEecCCCCCC-CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 69 VYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 69 i~l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
.|.+++..|. ..+++.+++.+++.++..+.. ............+++++.+++++|.+ ..+++++|++|+..++.
T Consensus 49 ~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~--~s~~~~~~~~~~~~le~~la~~~g~~---~~~~~~SG~~An~~ai~ 123 (406)
T PRK13393 49 VWCSNDYLGMGQHPAVLAAMHEALDTCGAGAG--GTRNISGTNHYHVLLEAELADLHGKE---AALLFTSGYVSNWAALS 123 (406)
T ss_pred EeecccccCCCCCHHHHHHHHHHHHHcCCCCc--ccccccCChHHHHHHHHHHHHHhCCC---cEEEeCCcHHHHHHHHH
Confidence 4455556665 678899999999987643321 11111122346778999999999964 55666666779999888
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc----CCceEEEEecccCcCcc
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHISNMLAS 223 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~ 223 (458)
.+. ...+|+.|++....|.+...++ ...|.+++.++.. |++++++.+. +++++|++++++|++|.
T Consensus 124 ~l~--~~~~g~~I~~~~~~H~s~~~~~----~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~ 192 (406)
T PRK13393 124 TLG--SRLPGCVILSDELNHASMIEGI----RHSRAEKRIFRHN-----DPADLERKLSDLDPHRPKLVAFESVYSMDGD 192 (406)
T ss_pred Hhh--cCCCCCEEEEccchhHHHHHHH----HHcCCeEEEeCCC-----CHHHHHHHHHhccCCCCEEEEEcCCCCCCCc
Confidence 763 1236777777777777665544 3357777777643 6777777664 35789999999999999
Q ss_pred cccHHHHHHHHHhcCcEEEEeccccCCcc-cCC-----CC--CCCCcEEEecccCCCCCCceeEEEEeccccccCCCccc
Q 012718 224 ILPIEEIVHWSHDVGAKVLVDACQSVPHM-VVD-----VQ--GLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 224 ~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~~-----~~--~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~ 295 (458)
+.|+++|.++|+++|+++++|++|+.|.. +.. .. ...+|++++|++|.+|..| |+++.++++++.+.....
T Consensus 193 ~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G-G~~~~~~~~~~~l~~~~~ 271 (406)
T PRK13393 193 IAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG-GYITGSAALCDFIRSFAS 271 (406)
T ss_pred hhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC-ceeeCCHHHHHHHHHhCc
Confidence 99999999999999999999999986552 111 00 1126888899999888765 888887776655442211
Q ss_pred cCcceEeeecCCCCCCCCCCccC-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFE-AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
.|. .++.+....+++.++++.+.+.+ ..+++..++.+++.+.|+++ ++++..+.
T Consensus 272 --------------------~~~~t~~~~p~~~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-- 326 (406)
T PRK13393 272 --------------------GFIFTTSLPPAVAAGALASVRHLKASS--AERERHQDRVARLRARLDKA-GIPHLPNP-- 326 (406)
T ss_pred --------------------CceecCccCHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHc-CCCcCCCC--
Confidence 111 34566666777778888876642 23456678899999999876 66544322
Q ss_pred CcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 375 EHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++++.+.+.+ ....++.+.|.+++||.++++.+...+. ..+.+|++++.+++++|++++++.|++++++
T Consensus 327 -----~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~-----g~~~iRis~~~~~t~edid~l~~~l~~~~~~ 396 (406)
T PRK13393 327 -----SHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPR-----GTERLRITPSPLHTDADIEHLVQALSEIWAR 396 (406)
T ss_pred -----CCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCC-----CCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 6677776643 2346788888764499998754332211 1368999999999999999999999999876
Q ss_pred h
Q 012718 454 F 454 (458)
Q Consensus 454 ~ 454 (458)
+
T Consensus 397 ~ 397 (406)
T PRK13393 397 L 397 (406)
T ss_pred c
Confidence 5
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=237.12 Aligned_cols=327 Identities=23% Similarity=0.300 Sum_probs=236.8
Q ss_pred CeEEecCCCCCC-----CcHHHHHHHHH-HHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEE
Q 012718 67 KLVYLDNAATSQ-----KPIAVLKALQN-YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVF 134 (458)
Q Consensus 67 ~~i~l~~~~~~~-----~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~ 134 (458)
++|.|+.+.... .++++.+++.+ ..... ...++......+.+|+++|++++ .+++.+|++
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~ 73 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSS--------SFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILV 73 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHT--------GCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEE
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhccc--------ccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEE
Confidence 468888776664 34555555544 11111 01112234456789999999998 443337899
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhcC-----
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR----- 207 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~----- 207 (458)
++|+++++..+...+. .++|++|++++|.|+ .+...++..|++++.++++ .++.+|++.|++.+++
T Consensus 74 ~~G~~~~~~~~~~~~~---~~~~~~vlv~~P~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 146 (363)
T PF00155_consen 74 TSGAQAALFLLLRLLK---INPGDTVLVPDPCYP----SYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKG 146 (363)
T ss_dssp ESHHHHHHHHHHHHHH---SSTTSEEEEEESSST----HHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTT
T ss_pred ecccccchhhhhhccc---ccccccceecCCccc----cccccccccCceeeeccccccccccccccccccccccccccc
Confidence 9999999888887762 468999999999999 5577778889999999965 5678899999999987
Q ss_pred -CceEEEEecccCcCcccccHH---HHHHHHHhcCcEEEEeccccCCccc--------CCCCCCCCcEEEecccCCCCCC
Q 012718 208 -KTKLVVIHHISNMLASILPIE---EIVHWSHDVGAKVLVDACQSVPHMV--------VDVQGLDADFLVASSHKMCGPT 275 (458)
Q Consensus 208 -~~~~v~~~~~~n~tG~~~~l~---~i~~l~~~~~~~vivD~a~~~g~~~--------~~~~~~~~d~~~~s~~K~~gp~ 275 (458)
+++++++++++||||..++.+ +|+++|+++|+++|+|++|+..... ..+......+++.|++|.+|.+
T Consensus 147 ~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 226 (363)
T PF00155_consen 147 PRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLP 226 (363)
T ss_dssp ETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSG
T ss_pred cccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccccc
Confidence 578999999999999999955 5555599999999999999954332 1122222368999999999988
Q ss_pred c--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHHHHH
Q 012718 276 G--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI--GMQKIHAYEME 351 (458)
Q Consensus 276 g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~--g~~~~~~~~~~ 351 (458)
| +|++++++++++.+......+ ..+.....++...+...... -++++++++++
T Consensus 227 GlRvG~i~~~~~~~~~l~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 283 (363)
T PF00155_consen 227 GLRVGYIVAPPELIERLRRFQRSG-----------------------LSSSPMQAAAAAALSDPELVEKWLEELRERLRE 283 (363)
T ss_dssp GGTEEEEEEEHHHHHHHHHHHHHT-----------------------TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhccccc-----------------------cccchhhHHHHHhhhcccccccccccchhhHHH
Confidence 8 999999888877666433211 11333333343444333211 36788899999
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee
Q 012718 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL 431 (458)
Q Consensus 352 l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~ 431 (458)
+++++.+.|++. ++.+..+.. +.+++..++..+..++.+.|.+++||.+.+|..+ +.++++|+++
T Consensus 284 ~~~~l~~~L~~~-~~~~~~~~~------~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~--------~~~~~iRi~~ 348 (363)
T PF00155_consen 284 NRDLLREALEEI-GITVLPPEA------GFFLWVRLDPNDAEELAQELLEEYGILVRPGSYF--------GVPGYIRISL 348 (363)
T ss_dssp HHHHHHHHHHHT-TSEEEHHSB------SSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGG--------TSTTEEEEEG
T ss_pred HHHHHHHHHHHh-hhheeeccC------ccEEEEEcccchHHHHHHHHHHhCCEEEEecCCC--------CCCCEEEEEe
Confidence 999999999888 888877651 4577777764456789999888779999998743 3378999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 012718 432 HFYNTKEDVDEFIHAL 447 (458)
Q Consensus 432 ~~~~t~~di~~l~~~l 447 (458)
...+.+++++++++|
T Consensus 349 -a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 349 -ASHSEEDLEEALERL 363 (363)
T ss_dssp -GCSCHHHHHHHHHHH
T ss_pred -ccCCHHHHHHHHhhC
Confidence 347999999999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=229.14 Aligned_cols=288 Identities=20% Similarity=0.183 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCC-CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
..++|+++|+++|++++ +|++|+|+++++.+++.++ +.+| +.|++++|.|. .+...++..|++++.++++
T Consensus 61 ~~~lr~~ia~~~~~~~~-~I~~t~G~~~~l~~~~~~~----~~~g~~~vlv~~p~y~----~~~~~~~~~g~~~~~v~~~ 131 (364)
T PRK04781 61 PPGLRSALAALYGCAPE-QLLIGRGSDEAIDLLVRAL----CVPGRDAVLVTPPVFG----MYAVCARLQNAPLVEVPLV 131 (364)
T ss_pred HHHHHHHHHHHhCcChH-HEEEeCCHHHHHHHHHHHh----cCCCCCeEEEcCCChH----HHHHHHHHcCCEEEEEecC
Confidence 35899999999999875 9999999999999999988 5677 79999999877 4455667789999999984
Q ss_pred C--C-CCCCHHHHHHh-hcCCceEEEEecccCcCcccccHHHHHHHHHh--cCcEEEEeccccCCcc---cCC-CCCCCC
Q 012718 192 D--D-ESPDLDKLKEM-LSRKTKLVVIHHISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHM---VVD-VQGLDA 261 (458)
Q Consensus 192 ~--~-~~~d~~~l~~~-l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~---~~~-~~~~~~ 261 (458)
+ + ..+|++++.+. ..++++++++++++||||.++|.+++.++++. ++++||+|++|.--.. ... ....+.
T Consensus 132 ~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~ 211 (364)
T PRK04781 132 DGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDN 211 (364)
T ss_pred CCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCC
Confidence 2 2 35688887554 46688999999999999999998877777764 4789999999872211 111 223346
Q ss_pred cEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 262 d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
.+++.|+||.||.+| +||++.++++++.+......+ +.+.....++..+++.-..
T Consensus 212 vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~~-----------------------~~~~~~~~~a~~~l~~~~~ 268 (364)
T PRK04781 212 LAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAPY-----------------------PVPTPCAALAEQALSAPAL 268 (364)
T ss_pred EEEEecChhhcccccceeeeeeCCHHHHHHHHhccCCC-----------------------CCCHHHHHHHHHHHhcccH
Confidence 788899999999777 999999998877766432211 1222222222233321100
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHh
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHR 419 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~ 419 (458)
....+..+.+++.++.+.+.|++++++....+.. +.+++++++ +..++.+.+.++ ||.++++..+.
T Consensus 269 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~------g~f~~~~~~--~~~~~~~~l~~~-gI~v~~~~~~~----- 334 (364)
T PRK04781 269 AVTARRVAEVRAERERLHAALAQLPGVRRVYPSQ------GNFLLVRFD--DAEAAFQALLAA-GVVVRDQRAAP----- 334 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCC------CcEEEEEcC--CHHHHHHHHHHC-CeEEeeCCCCC-----
Confidence 0123444566788889999998887764333331 778999887 467888888887 99999876331
Q ss_pred hcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 420 YLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 420 ~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+.++++||+++ +.++.++++++|+++.
T Consensus 335 --~~~~~~Ris~~---~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 335 --RLSDALRITLG---TPEQNDRVLAALQRTQ 361 (364)
T ss_pred --CCCCeEEEeCC---CHHHHHHHHHHHHHHH
Confidence 23679999998 6799999999998764
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-28 Score=235.61 Aligned_cols=345 Identities=17% Similarity=0.170 Sum_probs=239.2
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHH-hc-cCCCCCcchhhhHHHHHHHH-HHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEA-YN-SNVHRGIHFLSAKATDEYEL-ARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+.+.| .++.+.+++.+.+++.+++.. +. +++. ..+..+....+.+++ .++.+++++|++.. .|+++ |||+|+.
T Consensus 20 ~~~~~-~~~~~~~~~~v~~a~~~~~~~~~~~g~~~-~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~-~v~~~-sgt~a~~ 95 (402)
T cd00378 20 ETLEL-IASENFTSPAVMEAMGSDLTNKYAEGYPG-KRYYGGCEYVDEIEDLAIERAKKLFGAEYA-NVQPH-SGSQANL 95 (402)
T ss_pred hCeee-eccCCcCCHHHHHHhcccccccccCCCCC-CcccCCchHHHHHHHHHHHHHHHHhCCCce-eeecC-CcHHHHH
Confidence 33444 445566789999999887632 21 2221 233334444455555 67788999999753 44444 5789999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHH-HHHHcCCeEEEEeCCC---CCCCCHHHHHHhhc-CCceEEEEeccc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL-VAQKTGANLKFLNLND---DESPDLDKLKEMLS-RKTKLVVIHHIS 218 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~a~~~g~~~~~v~~~~---~~~~d~~~l~~~l~-~~~~~v~~~~~~ 218 (458)
.++.++ +++||+|++++++|.+....+.. .++..|.+++.++++. ++.+|++++++.+. .+++++++++++
T Consensus 96 ~~l~~l----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~ 171 (402)
T cd00378 96 AVYFAL----LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASA 171 (402)
T ss_pred HHHHHh----cCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcc
Confidence 999988 78999999999999865432211 1345687777776653 58899999999985 578999888776
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCC-CCCceeEEEEec-cccccCC
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKS-DLLSAMP 291 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~-~~~~~l~ 291 (458)
| |...|+++|+++|+++|+++|+|++|..|.. +..+. +.|++++|+||++ ||. +|+++.++ ++++.+.
T Consensus 172 ~--~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G~~-gg~i~~~~~~~~~~l~ 246 (402)
T cd00378 172 Y--PRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPR-GGLILTRKGELAKKIN 246 (402)
T ss_pred c--CCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCCCC-ceEEEeccHHHHHHHH
Confidence 5 5677999999999999999999999865542 22333 5799999999966 555 46666666 6666554
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
..... ...+++....+.++..++......+.++..+++.++++++.+.|.+. |+++...
T Consensus 247 ~~~~~--------------------~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 305 (402)
T cd00378 247 SAVFP--------------------GLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSG 305 (402)
T ss_pred HHhCc--------------------cccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeec
Confidence 22110 11245555666676667765554346788888999999999999987 8877633
Q ss_pred CCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC----CHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN----TKEDVDEFIH 445 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~----t~~di~~l~~ 445 (458)
+. .++++|+.++ +.+...+.+.|.++ ||.+.+..+...+.. . ..+..+|++++..+ +.+|++++++
T Consensus 306 ~~-----~~~~v~v~~~~~~~~~~~~~~~l~~~-gI~v~~~~~p~~~~~-~-~~~~~lRi~~~~~~~~~~~~~di~~~~~ 377 (402)
T cd00378 306 GT-----DNHLVLVDLRPKGITGKAAEDALEEA-GITVNKNTLPWDPSS-P-FVPSGIRIGTPAMTTRGMGEEEMEEIAD 377 (402)
T ss_pred CC-----CCeEEEEeCCccCCCHHHHHHHHHHc-CcEEcCCcCCCCCCC-C-CCCCeeEecCHHHHHhCCCHHHHHHHHH
Confidence 22 2678888886 34556777777777 999986443221100 0 12568999987643 6899999999
Q ss_pred HHHHHHHh
Q 012718 446 ALNETVSF 453 (458)
Q Consensus 446 ~l~~~~~~ 453 (458)
.|.+++++
T Consensus 378 ~l~~~~~~ 385 (402)
T cd00378 378 FIARALKD 385 (402)
T ss_pred HHHHHHhc
Confidence 99998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=231.92 Aligned_cols=293 Identities=20% Similarity=0.260 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHcCCC-----CCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeE
Q 012718 111 DEYELARKKVAAFINAS-----DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~-----~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~ 185 (458)
....++++.++++++.. ...++++++|+|+++..++.++ .++|++|+++.++|++. ...++..|.++
T Consensus 36 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~----~~~g~~vl~~~~~~~~~----~~~~~~~~~~~ 107 (350)
T cd00609 36 PGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRAL----LNPGDEVLVPDPTYPGY----EAAARLAGAEV 107 (350)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh----CCCCCEEEEcCCCchhH----HHHHHHCCCEE
Confidence 34446667777777654 1238999999999999999988 57899999999999965 45566679999
Q ss_pred EEEeCCCCCCCCH--HHHHHhhcCCceEEEEecccCcCcccccHHHH---HHHHHhcCcEEEEeccccCCcc----c---
Q 012718 186 KFLNLNDDESPDL--DKLKEMLSRKTKLVVIHHISNMLASILPIEEI---VHWSHDVGAKVLVDACQSVPHM----V--- 253 (458)
Q Consensus 186 ~~v~~~~~~~~d~--~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i---~~l~~~~~~~vivD~a~~~g~~----~--- 253 (458)
+.++.++++..+. +.+++...+++++|++++++||||.+.|++++ .++|+++|+++|+|++|+.+.. +
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~ 187 (350)
T cd00609 108 VPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPAL 187 (350)
T ss_pred EEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccc
Confidence 9999987776655 66777777889999999999999999996554 5899999999999999986432 1
Q ss_pred CCCCCCCCcEEEecccCCCCC--CceeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHH
Q 012718 254 VDVQGLDADFLVASSHKMCGP--TGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGL 330 (458)
Q Consensus 254 ~~~~~~~~d~~~~s~~K~~gp--~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 330 (458)
......+.|++++|++|+++. .++|++++++ ++.+.+..... +..++++.....++
T Consensus 188 ~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~ 246 (350)
T cd00609 188 ALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLP---------------------YTTSGPSTLSQAAA 246 (350)
T ss_pred cCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHH---------------------hcccCCChHHHHHH
Confidence 224455689999999997763 3489999998 66666543221 22346677777777
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEecc
Q 012718 331 GAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRS 409 (458)
Q Consensus 331 ~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~ 409 (458)
..+++... .+++++++++.++++++.+.|++.+...+. .+ ..+.++++.+++. +...+.+.+.+. ||.+.+
T Consensus 247 ~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~-----~~g~~~~~~~~~~~~~~~~~~~l~~~-gi~i~~ 318 (350)
T cd00609 247 AAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVV-KP-----SGGFFLWLDLPEGDDEEFLERLLLEA-GVVVRP 318 (350)
T ss_pred HHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CC-----CccEEEEEecCCCChHHHHHHHHHhC-CEEEec
Confidence 77777654 357888999999999999999988544431 22 2356888888764 455566677766 999987
Q ss_pred CCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 410 GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 410 g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
+..+.. ..+.++|++++.+ .+|+++++++|+
T Consensus 319 ~~~~~~------~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 319 GSAFGE------GGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred cccccc------CCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 754422 2367999999975 899999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=236.42 Aligned_cols=306 Identities=16% Similarity=0.153 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHHcC----CC-CCCcEEEeCChhHHHHHHHHHcCCCCC-CCCCEEEEcCCCCccchHHHHHHHHHc
Q 012718 108 KATDEYELARKKVAAFIN----AS-DSGEIVFTKNATEAINLVAYSWGLSNL-KSGDEVILTVAEHHSAIVPWQLVAQKT 181 (458)
Q Consensus 108 ~~~~~~~~~~~~la~~~g----~~-~~~~v~~t~g~t~a~~~~~~~l~~~~~-~~g~~vl~~~~~~~s~~~~~~~~a~~~ 181 (458)
....+..++|+.+|+++. .+ ..++|++|+|+++|+.+++.++ + .+||.|+++.|.|+ .+...+...
T Consensus 165 ~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l----~~~~gd~Vli~~P~Y~----~y~~~~~~~ 236 (534)
T PLN02231 165 SHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL----IRSEKDGILCPIPQYP----LYSASIALH 236 (534)
T ss_pred CCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHh----ccCCCCEEEEeCCCCh----hHHHHHHHc
Confidence 345667788888888873 22 1249999999999999999988 4 47999999999999 445566677
Q ss_pred CCeEEEEeCCCC--CCCCHHHHHHhhcC------CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCC
Q 012718 182 GANLKFLNLNDD--ESPDLDKLKEMLSR------KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVP 250 (458)
Q Consensus 182 g~~~~~v~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g 250 (458)
|++++.++++++ +.+|+++|++.+++ +++++++++|+||||.+++ +++|+++|+++|++||+|++|..-
T Consensus 237 g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l 316 (534)
T PLN02231 237 GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQEN 316 (534)
T ss_pred CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhc
Confidence 999999998854 67899999998865 6799999999999999998 678999999999999999998731
Q ss_pred c-----ccCCCCC---------CC-CcEEEecccC-CCCCCc--eeEEEE---eccccccCCCccccCcceEeeecCCCC
Q 012718 251 H-----MVVDVQG---------LD-ADFLVASSHK-MCGPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHST 309 (458)
Q Consensus 251 ~-----~~~~~~~---------~~-~d~~~~s~~K-~~gp~g--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~ 309 (458)
. ....+.. .+ ..+++.|+|| ++|.+| +||+.+ ++++++.+.....
T Consensus 317 ~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~-------------- 382 (534)
T PLN02231 317 VYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS-------------- 382 (534)
T ss_pred ccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh--------------
Confidence 1 1111110 11 2466779999 567777 999987 4566655532211
Q ss_pred CCCCCCccCCCCCCHHHHHHHHHHHH-------HHHHh--CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc
Q 012718 310 FADPPSRFEAGTPAIGEAIGLGAAID-------YLSTI--GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA 380 (458)
Q Consensus 310 ~~~~~~~~~~gt~~~~~~~~l~~al~-------~~~~~--g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 380 (458)
... +++..+..+...+++ .+... ..+++.+.+++.++++.+.|++++++++..+.. +
T Consensus 383 -------~~~-~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~G------g 448 (534)
T PLN02231 383 -------VNL-CSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEG------A 448 (534)
T ss_pred -------hhc-CCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCe------e
Confidence 111 233334444444442 11110 134567888999999999999988888876541 4
Q ss_pred cEEEEEe--CCC-----------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 381 ALCSFNV--ENI-----------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 381 ~~v~~~~--~~~-----------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
.++|.++ +.. +...++..|.++.||.+.||+.+... ....++|+++. .+.+++++.+++|
T Consensus 449 fylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~-----~g~~~~Rit~~--~~~e~l~eal~RL 521 (534)
T PLN02231 449 MYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQV-----PGTWHFRCTIL--PQEDKIPAIVSRL 521 (534)
T ss_pred eEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCC-----CCCCeEEEEeC--CCHHHHHHHHHHH
Confidence 4666344 311 12235565665459999999855321 12457999996 6889999999999
Q ss_pred HHHHHhhhc
Q 012718 448 NETVSFFNV 456 (458)
Q Consensus 448 ~~~~~~~~~ 456 (458)
.++++++.+
T Consensus 522 ~~~~~~~~~ 530 (534)
T PLN02231 522 TEFHKSFMD 530 (534)
T ss_pred HHHHHHHHH
Confidence 998887654
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=227.11 Aligned_cols=304 Identities=18% Similarity=0.200 Sum_probs=218.2
Q ss_pred CCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 65 SKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 65 ~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
++++++|..+..+..++ ..+. ....+..++ ... ..++|+.+++++|.+++ +|++|+|+++++..
T Consensus 16 ~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~y~----------~~~-~~~lr~~la~~~~~~~~-~i~~t~G~~~~i~~ 79 (330)
T TIGR01140 16 PEDWLDFSTGINPLGPP-VPPI---PASAWARYP----------DPE-YDELRAAAAAYYGLPAA-SVLPVNGAQEAIYL 79 (330)
T ss_pred hhheeEccccCCCCCCC-hhhc---chHHHhhCC----------Ccc-HHHHHHHHHHHhCCChh-hEEECCCHHHHHHH
Confidence 36789999887664433 2221 111111111 122 26899999999998765 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
+..++ .+| .|++++|+|.. +...++..|.+++.++ |++.+++.+ ++++++++++|+||||.+
T Consensus 80 ~~~~l-----~~g-~vl~~~p~y~~----~~~~~~~~g~~~~~~~-------d~~~l~~~~-~~~~~v~i~~p~NPtG~~ 141 (330)
T TIGR01140 80 LPRLL-----APG-RVLVLAPTYSE----YARAWRAAGHEVVELP-------DLDRLPAAL-EELDVLVLCNPNNPTGRL 141 (330)
T ss_pred HHHHh-----CCC-eEEEeCCCcHH----HHHHHHHcCCEEEEeC-------CHHHHHhhc-ccCCEEEEeCCCCCCCCC
Confidence 87654 467 69999999984 4566677899998887 788898888 467899999999999999
Q ss_pred cc---HHHHHHHHHhcCcEEEEeccccCCcccCCC----CCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccc
Q 012718 225 LP---IEEIVHWSHDVGAKVLVDACQSVPHMVVDV----QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 225 ~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~~~----~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~ 295 (458)
++ +++|+++|+++|++||+|++|.......++ ...+.+++++|+||.+|++| +||+++++++++.+.....
T Consensus 142 ~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~ 221 (330)
T TIGR01140 142 IPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREALG 221 (330)
T ss_pred CCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhcCC
Confidence 99 667888889999999999999733221121 12356799999999998777 7999999987777664332
Q ss_pred cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
. .+.+.....++. +.+...+ .+.++++++++++++.+.|++++.+++....
T Consensus 222 ~-----------------------~~~s~~~q~~~~---~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-- 273 (330)
T TIGR01140 222 P-----------------------WTVNGPARAAGR---AALADTAWQAATRARLAAERARLAALLARLGGLEVVGGT-- 273 (330)
T ss_pred C-----------------------CCchHHHHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCC--
Confidence 1 123333333333 3333322 3567889999999999999998656654321
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
+.++|+.++ +..++.+.|.++ ||.+.+|..+.. . ..+++|++++ ...++ ++++++|
T Consensus 274 -----~~f~~~~~~--~~~~l~~~l~~~-gi~v~pg~~f~~-----~-~~~~iRi~~~--~~~~~-~~~~~~l 329 (330)
T TIGR01140 274 -----ALFLLVRTP--DAAALHEALARR-GILIRDFDNFPG-----L-DPRYLRFALP--TDEEN-DRLEEAL 329 (330)
T ss_pred -----CeEEEEEcC--CHHHHHHHHHHC-CEEEEECCCCCC-----C-CCCEEEEEec--CHHHH-HHHHHhh
Confidence 668888876 467899999987 999999986521 1 1569999998 45556 8888776
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=231.11 Aligned_cols=346 Identities=14% Similarity=0.147 Sum_probs=238.4
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHHHHHHH-HHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYEL-ARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
++.+.|..+... +|+.+.+++..++.... .++. ..+..+....+.+++ +++.+++++|++.. .|+++ +||+|+
T Consensus 25 ~~~~~l~~~~n~-~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g~~~~-~i~~~-sgt~al 100 (416)
T PRK00011 25 EEHIELIASENF-VSPAVMEAQGSVLTNKYAEGYPG-KRYYGGCEYVDVVEQLAIDRAKELFGAEYA-NVQPH-SGSQAN 100 (416)
T ss_pred hcCeeeecccCc-CCHHHHHHHhchhhcccccCCCC-ccccccchHHHHHHHHHHHHHHHHhCCCce-eeecC-CchHHH
Confidence 456777765554 78999999987764322 1221 222233344555555 78899999999854 55554 568899
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHH-HHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcC-CceEEEEecccC
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL-VAQKTGANLKFLNLND-DESPDLDKLKEMLSR-KTKLVVIHHISN 219 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~-~~~~v~~~~~~n 219 (458)
..++.++ +++||+|+++.++|.+....+.. .....|++++.++++. ++.+|++++++.+++ ++++++++..
T Consensus 101 ~~~l~~l----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~-- 174 (416)
T PRK00011 101 AAVYFAL----LKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGAS-- 174 (416)
T ss_pred HHHHHHh----cCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCC--
Confidence 9999888 78999999999999764322111 1123467888888874 578999999999975 7888888643
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCC-CCCceeEEEEe-ccccccCCC
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGK-SDLLSAMPP 292 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~-~~~~~~l~~ 292 (458)
.+|...|+++|.++|+++|+++|+|++|+.|.. +..+. +.|++++|+||++ ||. +|+++.+ +++++.+..
T Consensus 175 ~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g~~-gg~i~~~~~~~~~~l~~ 251 (416)
T PRK00011 175 AYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRGPR-GGLILTNDEELAKKINS 251 (416)
T ss_pred cCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCCCC-ceEEEeCCHHHHHHHHH
Confidence 456778999999999999999999999986654 23343 6899999999965 555 5677775 566655542
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
.... +..+++....++++..++......++++..++.+++++++.+.|++. |+++....
T Consensus 252 ~~~~--------------------~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 310 (416)
T PRK00011 252 AVFP--------------------GIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGG 310 (416)
T ss_pred HhCc--------------------cccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecC
Confidence 2110 11234555556665555554444457888999999999999999987 78765311
Q ss_pred CCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC----CCCHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF----YNTKEDVDEFIHA 446 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~----~~t~~di~~l~~~ 446 (458)
...+++++.+++ .+..++.+.|.++ ||.++.+...... ...+ .+..+|++... ..+.+|++++++.
T Consensus 311 -----~~~~~~~i~~~~~~~~~~~~~~~L~~~-GI~v~~~~~p~~~-~~~~-~~~~~Ri~~~~~~~~~~t~~di~~l~~~ 382 (416)
T PRK00011 311 -----TDNHLVLVDLRSKGLTGKEAEAALEEA-NITVNKNAVPFDP-RSPF-VTSGIRIGTPAITTRGFKEAEMKEIAEL 382 (416)
T ss_pred -----CCCeEEEEeCcccCCCHHHHHHHHHHc-CcEEccCcCCCCC-CCCC-CCCceEecCHHHhhcCcCHHHHHHHHHH
Confidence 125788888853 3667888888877 9998743211100 0011 14579996532 3579999999999
Q ss_pred HHHHHHh
Q 012718 447 LNETVSF 453 (458)
Q Consensus 447 l~~~~~~ 453 (458)
|++++..
T Consensus 383 l~~~~~~ 389 (416)
T PRK00011 383 IADVLDN 389 (416)
T ss_pred HHHHHhc
Confidence 9998765
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=227.43 Aligned_cols=365 Identities=16% Similarity=0.172 Sum_probs=245.8
Q ss_pred hhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCC
Q 012718 47 LGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA 126 (458)
Q Consensus 47 ~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~ 126 (458)
+...++..+++.....+ + -||.+-..+ .|..... +.+....++.|. ..+..++...++...+.+.++++++.
T Consensus 73 ~~~~~~~~~~~~~~~~h--P--~f~g~~~~~-~p~~~~~-l~~l~~~lN~n~--~~~~~spa~t~lE~~v~~wl~~l~~~ 144 (522)
T TIGR03799 73 TQFLLDKLVAHSVHTAS--P--SFIGHMTSA-LPYFMLP-LSKLMVALNQNL--VKIETSKAFTPLERQVLGMMHHLVYG 144 (522)
T ss_pred HHHHHHHHHcCCCCCCC--C--CeEEeccCC-CchHHHH-HHHHHHHhcCCc--ceeecCcchHHHHHHHHHHHHHHhcc
Confidence 33334445566555544 2 234433333 2222211 222333344443 34445666788888899999999853
Q ss_pred C------------CCCcEEEeCChhHHHHHHHHHcCCCCCC----------------------CCCEEEEcCCCCccchH
Q 012718 127 S------------DSGEIVFTKNATEAINLVAYSWGLSNLK----------------------SGDEVILTVAEHHSAIV 172 (458)
Q Consensus 127 ~------------~~~~v~~t~g~t~a~~~~~~~l~~~~~~----------------------~g~~vl~~~~~~~s~~~ 172 (458)
. .....+||+|||+|+..++.+.+...+. ++..|++++.+|+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~-- 222 (522)
T TIGR03799 145 QDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSL-- 222 (522)
T ss_pred CcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHH--
Confidence 2 1124689999999999988775432111 245799999999965
Q ss_pred HHHHHHHHcCC---eEEEEeCCCCCCCCHHHHHHhhc----CCceEEE--EecccCcCcccccHHHHHHHHHhcCcEEEE
Q 012718 173 PWQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLS----RKTKLVV--IHHISNMLASILPIEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 173 ~~~~~a~~~g~---~~~~v~~~~~~~~d~~~l~~~l~----~~~~~v~--~~~~~n~tG~~~~l~~i~~l~~~~~~~viv 243 (458)
.+.++..|. +++.||++++|.+|+++|++.|. .+++.++ .+..++.||.+.|+++|+++|+++|+|++|
T Consensus 223 --~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHV 300 (522)
T TIGR03799 223 --GKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHV 300 (522)
T ss_pred --HHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEE
Confidence 566676787 79999999999999999999886 3444444 446678999999999999999999999999
Q ss_pred eccccCCcccCC-----CCCC-CCcEEEecccC-CCCCCceeEEEEecc-ccccCCC---ccccCcceEeeecCCCCCCC
Q 012718 244 DACQSVPHMVVD-----VQGL-DADFLVASSHK-MCGPTGIGFLFGKSD-LLSAMPP---FLGGGEMISDVFLDHSTFAD 312 (458)
Q Consensus 244 D~a~~~g~~~~~-----~~~~-~~d~~~~s~~K-~~gp~g~G~l~~~~~-~~~~l~~---~~~g~~~~~~~~~~~~~~~~ 312 (458)
|++|+.+....+ +... ++|++++|+|| +++|.|+|+++++++ ..+.+.+ +....+ ....
T Consensus 301 DaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~----------~~d~ 370 (522)
T TIGR03799 301 DAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKG----------SKDL 370 (522)
T ss_pred EchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCC----------CCcc
Confidence 999997766443 4443 68999999999 678999999999874 3343432 211000 0111
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC--C
Q 012718 313 PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN--I 390 (458)
Q Consensus 313 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 390 (458)
...+++ ||.+... +.++.+++++...|++++.++..++++++.+.|++.++++++.++. .++++|++.. .
T Consensus 371 ~~~~le-gsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~------l~iv~Fr~~p~~~ 442 (522)
T TIGR03799 371 GSHTLE-GSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPE------LCLLTYRYVPEEV 442 (522)
T ss_pred ccceee-cCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCC------ccEEEEEEeChhh
Confidence 124566 4444433 5688999999999999999999999999999999999999988753 6799998631 1
Q ss_pred ---------------C--h----HHHHHHHhhhcCeEe-ccCCCCChhhHhhc-CC-CCeEEEeeC-CCCCHHHHHHHHH
Q 012718 391 ---------------H--P----TDIATLLDQQYGVAT-RSGHHCAQPLHRYL-GV-NASARASLH-FYNTKEDVDEFIH 445 (458)
Q Consensus 391 ---------------~--~----~~~~~~l~~~~gi~~-~~g~~~~~~~~~~~-g~-~~~lRis~~-~~~t~~di~~l~~ 445 (458)
. . ..+.+.+.+. |... ........ .+ |. ...+|+++. +.++.+||+.+++
T Consensus 443 ~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~-G~~~vs~t~l~~~----~~~g~~~~~lR~~~~np~tt~~~i~~~l~ 517 (522)
T TIGR03799 443 QQALAKADEEQREKINELLDRLTKFIQKRQREA-GKSFVSRTRLTPA----QYDHQPTVVFRVVLANPLTTHEILQDILD 517 (522)
T ss_pred cccccccchhhhhhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEeccc----ccCCCCcEEEEEEecCCCCCHHHHHHHHH
Confidence 0 0 2455555555 5433 22111000 01 11 247999874 7789999998776
Q ss_pred H
Q 012718 446 A 446 (458)
Q Consensus 446 ~ 446 (458)
.
T Consensus 518 ~ 518 (522)
T TIGR03799 518 E 518 (522)
T ss_pred H
Confidence 4
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=216.90 Aligned_cols=342 Identities=15% Similarity=0.175 Sum_probs=258.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhccC--CCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCChhHHHHHHHHHc
Q 012718 73 NAATSQKPIAVLKALQNYYEAYNSN--VHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAINLVAYSW 149 (458)
Q Consensus 73 ~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~-t~g~t~a~~~~~~~l 149 (458)
.+++...|++|++++.+.+.++... .-....+++..+.+.++++++.|.++++.+.+++|+| ++|||.++..+...+
T Consensus 9 ~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nl 88 (364)
T PRK12462 9 SGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNF 88 (364)
T ss_pred cCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHc
Confidence 3455678888999888887765331 1123666778899999999999999999976667755 567999999999988
Q ss_pred CCCCCCCCCEEE-EcCCCCccchHHHHHHHHHcCCeEEEEeCCC----CCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 150 GLSNLKSGDEVI-LTVAEHHSAIVPWQLVAQKTGANLKFLNLND----DESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 150 ~~~~~~~g~~vl-~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~----~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
+.+|++++ +...++.+. .|...+++.| ++..+.... ...++++.+ .+.++.+.|.+++..+.+|..
T Consensus 89 ----l~~g~~~~~~~~tG~fg~--r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETstGv~ 159 (364)
T PRK12462 89 ----SRPGAAAPEYVTTGYWSR--KAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETVEGLQ 159 (364)
T ss_pred ----CCCCCcEEEEEeCCHHHH--HHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCCceEe
Confidence 77888666 666777766 4577788877 565554221 133455555 244567899999999999999
Q ss_pred ccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeee
Q 012718 225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVF 304 (458)
Q Consensus 225 ~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 304 (458)
+| ++.+.+++++|+|.+.+++..|++++++ |+++.+.+|.+||+|+++++++++.+++..+... .+
T Consensus 160 ~~-----~~~~~~~~llvvD~sS~~~s~pid~~~~--dvi~agsQKnlgP~Gltvvivs~~al~~~~~~~p-------~~ 225 (364)
T PRK12462 160 FP-----DAAGLPDSPLIADMSSDFMSRPFDVEAY--GMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLP-------PM 225 (364)
T ss_pred cC-----cccccCCCeEEEEcCchhhCCCCChHHc--cEEEeeccccCCCCceEEEEECHHHHhhccccCC-------ch
Confidence 97 3344468999999999999999999987 9999999998889999999999999877654221 11
Q ss_pred cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-
Q 012718 305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI--GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA- 381 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~--g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~- 381 (458)
.+...+.. ......||+...++++..+++++.+. |++.+.++.++.++.+++.+++++++......+ ..|+.
T Consensus 226 ldy~~~~~--~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~---~~RS~m 300 (364)
T PRK12462 226 LDFRTHVE--HRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHR---AARSTM 300 (364)
T ss_pred hhHHHHHh--cCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCh---hhcCcc
Confidence 11111111 11224599999999999999999887 999999999999999999999997665443333 34444
Q ss_pred EEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 382 LCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 382 ~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.++|++.+. ...++.+.+.++ |+.--.|+. .-+.+|+|+-...+.|++++|++.++++-++
T Consensus 301 nv~f~~~~~~l~~~f~~~a~~~-gl~~lkGhr----------~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 301 NVAFRFRQPRLDTLFKEQSTEA-GFCGLSGHR----------SIGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred eEEEEcCCHHHHHHHHHHHHHC-CCccccCCc----------ccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 789998753 356788888888 998766641 1467999998888999999999999988664
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=243.14 Aligned_cols=343 Identities=15% Similarity=0.127 Sum_probs=256.8
Q ss_pred EEecCCCCCC-CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 69 VYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 69 i~l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
.|++.|..+. .|..+.+.+.+.-. |....+......+.+.-+.+.+.+..+++++|++.. ++.++.++|.+.+.++.
T Consensus 79 ~~ig~G~y~~~~P~vi~~~i~~~~~-~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~a-naSl~d~aTAa~ea~~~ 156 (954)
T PRK05367 79 SYIGQGYYGTHTPPVILRNILENPA-WYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIA-NASLLDEATAAAEAMAL 156 (954)
T ss_pred cccCCCCCCCcCcHHHHHHHHhCcc-hhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChh-hccccccHHHHHHHHHH
Confidence 4566676664 44444455544322 111111122224455667788899999999999976 89999999999999998
Q ss_pred HcCCCCCCC--CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccc
Q 012718 148 SWGLSNLKS--GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL 225 (458)
Q Consensus 148 ~l~~~~~~~--g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~ 225 (458)
+++ +++ +++|++++..|+++...|+..++..|++++.++.+.+ ++ ++++..+ +.+..|.+|.+.
T Consensus 157 a~~---~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d----~~------~~~~~~v-lvq~p~~~G~i~ 222 (954)
T PRK05367 157 AKR---VSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA----LD------HDDVFGV-LLQYPGTSGEVR 222 (954)
T ss_pred hhh---hccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC----CC------cccEEEE-EEecCCCCeeec
Confidence 873 555 4899999999999999999999999999999997542 11 2344444 444568899999
Q ss_pred cHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC-----CCCCceeEEEEeccccccCCCccccCcce
Q 012718 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-----CGPTGIGFLFGKSDLLSAMPPFLGGGEMI 300 (458)
Q Consensus 226 ~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-----~gp~g~G~l~~~~~~~~~l~~~~~g~~~~ 300 (458)
|+++|+++||++|+++++|+.+.......+..++|+|++++|.||| ||++|+|++++++++.+.+++.+.||..-
T Consensus 223 d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d 302 (954)
T PRK05367 223 DYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVD 302 (954)
T ss_pred cHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecc
Confidence 9999999999999999999988554444577899999999999998 55556999999999989998777776431
Q ss_pred Eeee--cCC-CCCCCCCCccCCCCCCHHHHHHHHHHH-----HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 301 SDVF--LDH-STFADPPSRFEAGTPAIGEAIGLGAAI-----DYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 301 ~~~~--~~~-~~~~~~~~~~~~gt~~~~~~~~l~~al-----~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
.... +.. -.......|++.+|+|+....++.+.+ .++...|++++.+++..++.++.+.|++. |+++..+.
T Consensus 303 ~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~~~~ 381 (954)
T PRK05367 303 AAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL-GLEVVHDS 381 (954)
T ss_pred cCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CcccCCCC
Confidence 1110 000 011223468899999987665555555 44677799999999999999999999874 88876442
Q ss_pred CCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
....+.++++ .+..++.++|.++ ||.++... .+.+|+|++.++|++||+++++.|.
T Consensus 382 ------~f~~~~~~~~-~~~~~i~~~l~~~-gi~~~~~~------------~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 382 ------FFDTLTVEVG-GDAAAVLARALAA-GINLRRVD------------DDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred ------CCCeEEEeCC-CCHHHHHHHHHHC-Cceecccc------------CCEEEEEecccCCHHHHHHHHHHHc
Confidence 1357777765 3678999999988 99884321 4679999999999999999999997
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-27 Score=225.08 Aligned_cols=314 Identities=17% Similarity=0.182 Sum_probs=215.5
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C---CCCCCcEEEeCC
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N---ASDSGEIVFTKN 137 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g---~~~~~~v~~t~g 137 (458)
.+.+.|+.+... +.++.+.+++.+.... ..+ .......++|+++++++ | ++++ +|++|+|
T Consensus 27 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~~Y----------~~~~G~~~lr~~ia~~l~~~~~~~~~~~~-~I~it~G 94 (364)
T PRK07865 27 DGIVDLSVGTPVDPVPPVIQEALAAAADA-PGY----------PTTAGTPELREAIVGWLARRRGVTGLDPA-AVLPVIG 94 (364)
T ss_pred CCEEEcCCCCCCCCCCHHHHHHHHHHHhh-CCC----------CCccCCHHHHHHHHHHHHHHcCCCCCCcc-cEEEccC
Confidence 456788877653 4467777777654321 111 11222346667777766 4 4454 9999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+++++.+++..+ .+++||.|++++|+|+.. ...++..|++++.++ ++++++ ..++++++++++
T Consensus 95 ~~~~i~~~~~~l---~~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~-------~~~~l~---~~~~~~v~~~~p 157 (364)
T PRK07865 95 SKELVAWLPTLL---GLGPGDVVVIPELAYPTY----EVGARLAGATVVRAD-------SLTELG---PQRPALIWLNSP 157 (364)
T ss_pred hHHHHHHHHHHH---cCCCCCEEEECCCCcccH----HHHHHhcCCEEEecC-------ChhhCC---cccceEEEEcCC
Confidence 999999987766 257999999999999854 555566799888775 233332 257899999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCC-CC------CCCCcEEEecccCCCCCCc--eeEEEE
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVD-VQ------GLDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~-~~------~~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+||||.+++ +++|.++|+++|++||+|++|..-.. ++. +. +.+..++++|+||.+|.+| +||++.
T Consensus 158 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~ 237 (364)
T PRK07865 158 SNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAG 237 (364)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEec
Confidence 999999999 56888899999999999999983211 111 10 1235689999999988777 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+...... . ..+.+.....++..+++... .+++.++.+++.++.+.+.|++
T Consensus 238 ~~~~~~~~~~~~~~--------------------~-~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~ 294 (364)
T PRK07865 238 DPALVAELLEVRKH--------------------A-GMMVPAPVQAAMVAALGDDA--HVREQRERYARRRAVLRPALEA 294 (364)
T ss_pred CHHHHHHHHHHHHh--------------------c-CCCcCHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 88877666532210 0 01233333344444443211 2566778888889999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
. ++.+..+. .+.++|+.++ .+..++.+.|.++ ||.+.+|..+.. ..++++||+++. +.+++++
T Consensus 295 ~-g~~~~~~~------~~~~~~~~~~-~~~~~~~~~l~~~-gv~v~pg~~f~~------~~~~~iRi~~~~--~~~~~~~ 357 (364)
T PRK07865 295 A-GFRVDHSE------AGLYLWATRG-EDCWDTVAWLAER-GILVAPGDFYGP------AGAQHVRVALTA--TDERIAA 357 (364)
T ss_pred c-CCcccCCC------ccEEEEEeCC-CCHHHHHHHHHHC-CEEEeCccccCc------CCCCEEEEEecC--CHHHHHH
Confidence 6 76655443 1446777764 3456788888877 999999874421 125799999984 6899999
Q ss_pred HHHHHH
Q 012718 443 FIHALN 448 (458)
Q Consensus 443 l~~~l~ 448 (458)
++++|.
T Consensus 358 ~~~~l~ 363 (364)
T PRK07865 358 AVERLA 363 (364)
T ss_pred HHHHhh
Confidence 998874
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=230.14 Aligned_cols=299 Identities=19% Similarity=0.247 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.+|++.|++. . +++++|+.|+..++. + +++||+|+++++.|+++...+...+++.|++++.++
T Consensus 53 ~p~~~~le~~lA~l~g~~~--~-v~~~sG~~ai~~~l~-~----l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~ 124 (390)
T PRK08064 53 NPTREALEDIIAELEGGTK--G-FAFASGMAAISTAFL-L----LSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVD 124 (390)
T ss_pred ChhHHHHHHHHHHHhCCCC--e-EEECCHHHHHHHHHH-H----hCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEEC
Confidence 4556688899999999872 4 445666788888876 4 578999999999999888788888888999999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.. |++++++.+++++++|++++++||||.+.|+++|.++|+++|+++++|++|+.+.....+ ++++|+++.|+|
T Consensus 125 ~~-----d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~-~~g~Divv~S~t 198 (390)
T PRK08064 125 MT-----NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL-DLGADVVLHSAT 198 (390)
T ss_pred CC-----CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch-hhCCcEEEeecc
Confidence 74 789999999999999999999999999999999999999999999999999877542222 567999999999
Q ss_pred CCC-CCCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMC-GPTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~-gp~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|++ |+.| .|++++++ ++++.+.++..+++. ..+...... .+.-++. +...
T Consensus 199 K~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~---------------------~~~~~~a~l---~~~gl~t--l~~R 252 (390)
T PRK08064 199 KFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGA---------------------VLGVQDCWL---VLRGLKT--LHVR 252 (390)
T ss_pred eeccCCccceeEEEEeCCHHHHHHHHHHHHhcCC---------------------CCCHHHHHH---HHcccCc--HHHH
Confidence 965 4665 58888764 566666544433222 111111111 1121111 3344
Q ss_pred HHHHHHHHHHHHHHHhcCCCEE-EeCCCCC----------CcCccccEEEEEeCCCChHHHHHHHhhhcCe---EeccC-
Q 012718 346 HAYEMELAKYLYENLLSIPNIR-IYGPKPS----------EHVQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSG- 410 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g- 410 (458)
.++..+.+..+.+.|++.|.+. ++.+.-. .....+++++|.+.+ .+++.+.+... ++ .++-|
T Consensus 253 ~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~--~~~~~~f~~~l-~l~~~~~s~G~ 329 (390)
T PRK08064 253 LEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS--EEAVRQFVSHV-KLPVFAVSLGA 329 (390)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC--HHHHHHHHHhC-CcceEcccCCC
Confidence 4555667777777787765442 3322110 113467799999974 34555555544 76 55556
Q ss_pred -----------CCCChhhH--hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 411 -----------HHCAQPLH--RYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 411 -----------~~~~~~~~--~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.||..+.. ...|. ++.+|+|++.++.++.|+.+.++|+++.
T Consensus 330 ~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~~ 384 (390)
T PRK08064 330 VESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYVE 384 (390)
T ss_pred CcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhcc
Confidence 44444332 23455 6899999999888888888888877653
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-27 Score=229.94 Aligned_cols=380 Identities=15% Similarity=0.096 Sum_probs=246.7
Q ss_pred chhhhhc-CCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc
Q 012718 46 SLGHITR-PDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI 124 (458)
Q Consensus 46 ~~~~~~r-~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 124 (458)
++.+.+. ...|......| --|+.+-..++.+..++..+.... ++.+ ...+..++...+....+.+.+++++
T Consensus 64 ~~l~~~~~~i~~~~~~~~h----P~f~~~~~~~~~~~~~lad~l~~~--~n~~--~~~~~~sp~~~~lE~~vi~wl~~l~ 135 (490)
T PLN02880 64 QVLDDVQAKILPGVTHWQS----PNYFAYYPSNSSVAGFLGEMLSAG--LNIV--GFSWITSPAATELEMIVLDWLAKLL 135 (490)
T ss_pred HHHHHHHHHHhcCCCCCCC----CCeeEeccCCCcHHHHHHHHHHHh--hccC--CcccccCcccHHHHHHHHHHHHHHh
Confidence 3333333 34666655443 234555444444445444332222 2222 2333345556788888999999999
Q ss_pred CCCCC------CcEEEeCChhHHHHHHHHHcCCCCCC-------CCCEEEEcCCCCccchHHHHHHHHHcCC---eEEEE
Q 012718 125 NASDS------GEIVFTKNATEAINLVAYSWGLSNLK-------SGDEVILTVAEHHSAIVPWQLVAQKTGA---NLKFL 188 (458)
Q Consensus 125 g~~~~------~~v~~t~g~t~a~~~~~~~l~~~~~~-------~g~~vl~~~~~~~s~~~~~~~~a~~~g~---~~~~v 188 (458)
|.+.. ...++|+|||+|+..++.+.+....+ ++-.|++++..|+|. .+.+...|+ .++.|
T Consensus 136 g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv----~Kaa~~lGlg~~~v~~V 211 (490)
T PLN02880 136 NLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSAL----QKACQIAGIHPENCRLL 211 (490)
T ss_pred CCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHH----HHHHHHcCCCHHHEEEe
Confidence 99853 14789999999998888765321110 222577788888854 777777787 47889
Q ss_pred eCCC--CCCCCHHHHHHhhcC------CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccC-----C
Q 012718 189 NLND--DESPDLDKLKEMLSR------KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-----D 255 (458)
Q Consensus 189 ~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~-----~ 255 (458)
|++. ++.+|++.|++.|.+ .+.+|+.+..++.+|.+.|+++|+++|+++|+|+|||++|+.+.... .
T Consensus 212 p~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~ 291 (490)
T PLN02880 212 KTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHY 291 (490)
T ss_pred ecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHH
Confidence 9875 578999999999864 25788999999999999999999999999999999999999876532 2
Q ss_pred CCC-CCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecC-CCCCCCCCCccCCCCCCHHHHHHHHH
Q 012718 256 VQG-LDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD-HSTFADPPSRFEAGTPAIGEAIGLGA 332 (458)
Q Consensus 256 ~~~-~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~gt~~~~~~~~l~~ 332 (458)
+.. .++|+++.++|| ++.|.|||++++++.. .....+..++......... ...+......++.|.. ...+.++.
T Consensus 292 l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~-~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr--~~alklw~ 368 (490)
T PLN02880 292 IDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRN-ALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRR--FRSLKLWM 368 (490)
T ss_pred hcCchhcCEEEECchhhcCCCccEEEEEEeCHH-HHHHHHccCHHHhcCccccccCCCChhccCcCCCCc--ccHHHHHH
Confidence 333 258999999999 5669999999999632 1111111111111000000 0000000011112222 12245555
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC--Ch-------HHHHHHHhhhc
Q 012718 333 AIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI--HP-------TDIATLLDQQY 403 (458)
Q Consensus 333 al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-------~~~~~~l~~~~ 403 (458)
+++.+...|+.+..++..++++++.+.|++.++++++.++. .++++|+++.. +. .++.++|.+..
T Consensus 369 ~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~------~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g 442 (490)
T PLN02880 369 VLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRI------FSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSG 442 (490)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc------eEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCC
Confidence 55555444455555555599999999999999999988753 77999998632 11 34666666664
Q ss_pred CeEeccCCCCChhhHhhcCCCCeEEEeeCCCC-CHHHHHHHHHHHHHHHHhhh
Q 012718 404 GVATRSGHHCAQPLHRYLGVNASARASLHFYN-TKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 404 gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~-t~~di~~l~~~l~~~~~~~~ 455 (458)
.+.+.... +....++|++++.++ +.+|++.+++.|.++.+++.
T Consensus 443 ~~~v~~t~---------~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~ 486 (490)
T PLN02880 443 KIFISHTV---------LSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLL 486 (490)
T ss_pred CEEEEEEE---------ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 66665332 334679999987555 46999999999999887764
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=223.32 Aligned_cols=309 Identities=20% Similarity=0.211 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
....++++.+++++|.+ ++++++|||+|+..++.++ .+++||+|+++.++|++...+ +...|++++.+++
T Consensus 18 ~~~~~~~~~la~~~~~~---~~~~~~sgt~al~~~l~~l---~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~ 87 (352)
T cd00616 18 PKVREFEKAFAEYLGVK---YAVAVSSGTAALHLALRAL---GIGPGDEVIVPSFTFVATANA----ILLLGATPVFVDI 87 (352)
T ss_pred HHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHc---CCCCCCEEEeCCcchHHHHHH----HHHcCCeEEEEec
Confidence 34668899999999974 7888999999999999988 357899999999999976543 4556999999999
Q ss_pred CC-CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC--CCCCCCcEEEec
Q 012718 191 ND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD--VQGLDADFLVAS 267 (458)
Q Consensus 191 ~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~--~~~~~~d~~~~s 267 (458)
++ ++.+|++++++.+++++++|++++ ++|...|+++|.++|+++|+++|+|++|++|....+ +.. ..|+.++|
T Consensus 88 ~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~-~~d~~~~S 163 (352)
T cd00616 88 DPDTYNIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGT-FGDAGAFS 163 (352)
T ss_pred CCCcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEccc-CcceeEEc
Confidence 87 688899999999988999998865 599999999999999999999999999998876432 112 25888888
Q ss_pred cc--CCCCCCceeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 268 SH--KMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 268 ~~--K~~gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
+| |+++.+..|+++.++ ++.+.++....++..... ..+......+..+.++. .+++......++++
T Consensus 164 ~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~aa~~~~~l~~~~~ 232 (352)
T cd00616 164 FHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDR-----FKYEHEILGYNYRLSEI------QAAIGLAQLEKLDE 232 (352)
T ss_pred CCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCC-----CccccceeeeccCcCHH------HHHHHHHHHHhhHH
Confidence 76 977543467777764 565555433222211000 00000001111222222 22222222234678
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC---CCChHHHHHHHhhhcCeEeccCCCCChhhHhhc
Q 012718 345 IHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE---NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~ 421 (458)
+.++.+++.+++.+.|.+++++++..+... ......++.|.++ +.+..++.+.|.++ ||.++ .+|.+..+...
T Consensus 233 ~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~-gI~~~--~~~~~~~~~~~ 308 (352)
T cd00616 233 IIARRREIAERYKELLADLPGIRLPDVPPG-VKHSYHLYVIRLDPEAGESRDELIEALKEA-GIETR--VHYPPLHHQPP 308 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCCCCC-CceeeEEEEEEECCcCCCCHHHHHHHHHHC-CCCee--eecCccccCHh
Confidence 888999999999999999889988765421 0123457888887 56889999999988 99664 33433221110
Q ss_pred C----------C-------CCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 422 G----------V-------NASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 422 g----------~-------~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
. . .+.+|++++.++|++||++++++|+
T Consensus 309 ~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 309 YKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred hhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 0 0 3789999999999999999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=226.57 Aligned_cols=298 Identities=21% Similarity=0.267 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+..+++++.+++++|.+ ++++++||++|+..++.++ +++||.|+++.+.|.++...+.......|++++.++
T Consensus 60 ~p~~~~le~~la~l~g~~---~~v~~ssG~~Ai~~al~al----~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd 132 (390)
T PRK08133 60 NPTVTMFQERLAALEGAE---ACVATASGMAAILAVVMAL----LQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVD 132 (390)
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEEC
Confidence 445678999999999986 6788999999999999887 689999999999999887777777788899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.+ |++++++.+++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+..... ...++|+++.|++
T Consensus 133 ~~-----d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~p-l~~g~Divv~S~s 206 (390)
T PRK08133 133 LT-----DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQP-LKLGADVVIHSAT 206 (390)
T ss_pred CC-----CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCc-hhhCCcEEEeecc
Confidence 75 78999999999999999999999999999999999999999999999999986654222 2457899999999
Q ss_pred CCCCCCc--e-eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 270 KMCGPTG--I-GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 270 K~~gp~g--~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
|++++.| + |+++.+++.++.+....... ..+.+... ...++.-++. +....
T Consensus 207 K~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~---------------------g~~~~~~~---a~~~l~gl~t--l~~R~ 260 (390)
T PRK08133 207 KYLDGQGRVLGGAVVGSKELMEEVFGFLRTA---------------------GPTLSPFN---AWVFLKGLET--LSLRM 260 (390)
T ss_pred eeecCCcceEeEEEEcCHHHHHHHHHHHHHh---------------------CCCCCHHH---HHHHHcccch--HHHHH
Confidence 9888776 3 77777776654443221100 11222211 1122222222 34444
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCC-C----------cCccccEEEEEeCCCChHHHHHHHhhhcCe---EeccCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPS-E----------HVQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSGHH 412 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~-~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g~~ 412 (458)
++..+++..+.+.|++.|+++....+.. . ....+++++|.+.+ +.++..+.+..- .+ .++-|..
T Consensus 261 ~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~-~~~~~~~f~~~l-~l~~~~~slG~~ 338 (390)
T PRK08133 261 EAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG-GREAAWRVIDAT-RLISITANLGDT 338 (390)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC-CHHHHHHHHHhC-CcceEeccCCCc
Confidence 5556788889999998887764322221 0 12456799999974 233333333322 33 2232321
Q ss_pred -----CC-h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 413 -----CA-Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 413 -----~~-~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
|+ . ......|. ++.+|+|++. ||++.+++.|+++++
T Consensus 339 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 389 (390)
T PRK08133 339 KTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGL----EDVADIKADLARGLA 389 (390)
T ss_pred ceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHhh
Confidence 11 0 01123344 5799999998 788888888888774
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=221.75 Aligned_cols=313 Identities=17% Similarity=0.159 Sum_probs=213.5
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C---CCCCCcEEEeCC
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N---ASDSGEIVFTKN 137 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g---~~~~~~v~~t~g 137 (458)
.+.+.|..+... +.++.+.+++.+.... ..++ ......++|+++++++ | ++++ +|++|+|
T Consensus 21 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~~Y~----------~~~G~~~lr~~ia~~~~~~~~~~~~~~~-~I~it~G 88 (357)
T TIGR03539 21 DGIVDLSVGTPVDPVPPLIRAALAAAADA-PGYP----------QTWGTPELREAIVDWLERRRGVPGLDPT-AVLPVIG 88 (357)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhh-CCCC----------cccCCHHHHHHHHHHHHHhcCCCCCCcC-eEEEccC
Confidence 556778776543 5567777777665421 1111 1122335566666665 3 5454 9999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+++++..++..+ .+++||.|++++|+|++. ...++..|++++.++ |++.++ ..++++|+++++
T Consensus 89 ~~~~i~~~~~~l---~~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~v~-------~~~~l~---~~~~~~v~~~~p 151 (357)
T TIGR03539 89 TKELVAWLPTLL---GLGPGDTVVIPELAYPTY----EVGALLAGATPVAAD-------DPTELD---PVGPDLIWLNSP 151 (357)
T ss_pred hHHHHHHHHHHH---cCCCCCEEEECCCCcHHH----HHHHHhcCCEEeccC-------ChhhcC---ccCccEEEEeCC
Confidence 999999988766 258999999999999844 444566799888774 333332 357899999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccC-Cc--ccCC-CC------CCCCcEEEecccCCCCCCc--eeEEEE
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSV-PH--MVVD-VQ------GLDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~-g~--~~~~-~~------~~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+||||.+++ +++|.++|+++|+++|+|++|.. .. .+.. +. .....+++.|+||.+|.+| +||++.
T Consensus 152 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~ 231 (357)
T TIGR03539 152 GNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAG 231 (357)
T ss_pred CCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEec
Confidence 999999998 66789999999999999999862 11 1111 10 1224688899999888777 899999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+..... .....++.....++..+++.. ..++++++.+++.++++.+.|.+
T Consensus 232 ~~~~~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~L~~ 288 (357)
T TIGR03539 232 DPALVAELLTVRK---------------------HAGLMVPAPVQAAMVAALGDD--GHVAEQKARYAARRAQLKPALEK 288 (357)
T ss_pred CHHHHHHHHHHHh---------------------hcccCCCHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766543221 001223443444444455321 22566778888889999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
. ++.+..+. .+.++|+.++. +..++.+.|.++ ||.+.+|..+.. ..++++||+++ .+.+++++
T Consensus 289 ~-g~~~~~p~------~~~~~~~~~~~-~~~~~~~~l~~~-gV~v~pg~~f~~------~~~~~iRis~~--~~~~~i~~ 351 (357)
T TIGR03539 289 A-GFRIDHSE------AGLYLWATRGE-DAWDTVDRLAEL-GILVAPGDFYGP------AGSQHVRVALT--ATDERIAA 351 (357)
T ss_pred c-CCCCcCCC------ccEEEEEECCC-CHHHHHHHHHhC-CEEECCccccCC------CCCCeEEEEec--CCHHHHHH
Confidence 6 66654443 14467777653 566788888877 999999874421 12579999998 47889999
Q ss_pred HHHHH
Q 012718 443 FIHAL 447 (458)
Q Consensus 443 l~~~l 447 (458)
++++|
T Consensus 352 ~~~~l 356 (357)
T TIGR03539 352 AVARL 356 (357)
T ss_pred HHHhh
Confidence 88775
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=226.33 Aligned_cols=310 Identities=15% Similarity=0.108 Sum_probs=213.8
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
..+++.+.+++.+..... . .+......+++++.+++++| + +++++++|||+++..++.++ +++
T Consensus 8 ~~~~~~v~~a~~~~~~~~------~----~~~~~~~~~~l~~~~a~~~g--~-~~~~~~~~gt~a~~~~~~~l----~~~ 70 (338)
T cd06502 8 TGPTPEMLEAMAAANVGD------D----VYGEDPTTAKLEARAAELFG--K-EAALFVPSGTAANQLALAAH----TQP 70 (338)
T ss_pred CCCCHHHHHHHHhcccCC------c----ccCCCHHHHHHHHHHHHHhC--C-CeEEEecCchHHHHHHHHHh----cCC
Confidence 347788888887764221 1 01123457788999999999 3 38889999999999999887 689
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-------CceEEEEecccCcCccccc---
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-------KTKLVVIHHISNMLASILP--- 226 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~~~n~tG~~~~--- 226 (458)
||.|++++++|.+..... ..++..|++++.++.+. +.+|++++++++++ ++++|++++++|+ |.+++
T Consensus 71 gd~v~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~ 147 (338)
T cd06502 71 GGSVICHETAHIYTDEAG-APEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDE 147 (338)
T ss_pred CCeEEEecCcceeeecCC-cHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHH
Confidence 999999999998754321 23344699999999754 67899999999875 6899999999997 55545
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceE
Q 012718 227 IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~ 301 (458)
+++|+++|+++|+++|+|++|..+.. ++.....+.|+++.|+||++|.+|.++++.++++++.+.+....++
T Consensus 148 l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~--- 224 (338)
T cd06502 148 LKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAG--- 224 (338)
T ss_pred HHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhC---
Confidence 67899999999999999998753211 1111124689999999998886665566678777776654322110
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA 381 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 381 (458)
++.+.... ...+++..+...++.+..+++.++++++.+.|+++ ++.+..+ .++
T Consensus 225 ------------------~~~~~~~~-~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~-------~~~ 277 (338)
T cd06502 225 ------------------GGMRQSGF-LAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL-GGLESEV-------QTN 277 (338)
T ss_pred ------------------CChhhHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-CCCcccc-------cCC
Confidence 11111111 22233344444345667788888899999999987 4443322 267
Q ss_pred EEEEEeCCCC--hHHHHHHHh---hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 382 LCSFNVENIH--PTDIATLLD---QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 382 ~v~~~~~~~~--~~~~~~~l~---~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
++.+.+++.. ..++.+.+. ++ |+.+.+.. .+++|++++.+++++|++++++++++
T Consensus 278 ~~~v~~~~~~~~~~~l~~~l~~~~~~-gi~~~~~~------------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 278 IVLLDPVEANAVFVELSKEAIERRGE-GVLFYAWG------------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred eEEEecCCccHHHHHHHHHHHHhhhC-CEEEEecC------------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 7777765311 112333332 44 88876432 26899999999999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-26 Score=224.08 Aligned_cols=375 Identities=15% Similarity=0.127 Sum_probs=257.1
Q ss_pred chhhhh-cCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc
Q 012718 46 SLGHIT-RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI 124 (458)
Q Consensus 46 ~~~~~~-r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 124 (458)
++.+.+ +...|....+.| --||.+-..+..+..++..+.... + |.....+..++...++...+.+.+++++
T Consensus 112 ~il~~~~~~i~p~~~~~~h----P~f~a~~~~~~~~~~~lgd~l~sa--~--n~~~~~~~~sPa~t~lE~~vi~wl~~l~ 183 (539)
T PLN02590 112 ELLDDVSKKIMPGITHWQS----PSYFAYYASSTSVAGFLGEMLNAG--L--SVVGFTWLTSPAATELEIIVLDWLAKLL 183 (539)
T ss_pred HHHHHHHHHHhccCCcCCC----CCeeEeccCCCcHHHHHHHHHHHh--c--ccccCCcccCchhHHHHHHHHHHHHHHh
Confidence 344444 345666655544 245555544555555444332221 2 2222344455667888888999999999
Q ss_pred CCCCC------CcEEEeCChhHHHHHHHHHcCCCCC-------CCCCEEEEcCCCCccchHHHHHHHHHcCC---eEEEE
Q 012718 125 NASDS------GEIVFTKNATEAINLVAYSWGLSNL-------KSGDEVILTVAEHHSAIVPWQLVAQKTGA---NLKFL 188 (458)
Q Consensus 125 g~~~~------~~v~~t~g~t~a~~~~~~~l~~~~~-------~~g~~vl~~~~~~~s~~~~~~~~a~~~g~---~~~~v 188 (458)
|.+.. ...+|++|+|+|+..++.+.+.... .+.-.|++++..|+|. .+.++..|+ .++.|
T Consensus 184 glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv----~KAa~ilGlg~~~vr~V 259 (539)
T PLN02590 184 QLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSF----RKACLIGGIHEENIRLL 259 (539)
T ss_pred CCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHH----HHHHHHcCCCcccEEEE
Confidence 99853 2578999999999888776542111 1222666788888854 777777787 58999
Q ss_pred eCCC--CCCCCHHHHHHhhcC------CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC-----
Q 012718 189 NLND--DESPDLDKLKEMLSR------KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD----- 255 (458)
Q Consensus 189 ~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~----- 255 (458)
|++. ++.+|+++|+++|.+ .+.+|+.+..++.||.+.|+++|+++|++||+|+|||++|+.......
T Consensus 260 p~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~ 339 (539)
T PLN02590 260 KTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKF 339 (539)
T ss_pred eCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHH
Confidence 9884 578999999999965 357899999999999999999999999999999999999997654221
Q ss_pred CCC-CCCcEEEecccCC-CCCCceeEEEEeccc--cccCC---CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHH
Q 012718 256 VQG-LDADFLVASSHKM-CGPTGIGFLFGKSDL--LSAMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAI 328 (458)
Q Consensus 256 ~~~-~~~d~~~~s~~K~-~gp~g~G~l~~~~~~--~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 328 (458)
+.. ..+|.++.++||+ +.|.+||+++++++. .+.+. .++.......+...+..+ ...+.+.. ...+
T Consensus 340 ~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d-----~~i~lsRr--~raL 412 (539)
T PLN02590 340 IDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKD-----WQISLSRR--FRSL 412 (539)
T ss_pred hcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccc-----cCCCCCCc--hHHH
Confidence 111 2389999999995 569999999999752 22221 222100000000011111 12222222 3567
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC--C-------hHHHHHHH
Q 012718 329 GLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI--H-------PTDIATLL 399 (458)
Q Consensus 329 ~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-------~~~~~~~l 399 (458)
.++.+++.+...|+.++.++..++++++.+.|++.++++++.++. .++|+|+.... + ..++.+.+
T Consensus 413 klW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~------l~iVcFr~~~~~~~~~~~~~ln~~l~~~l 486 (539)
T PLN02590 413 KLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRY------FSLVCFRLAPVDGDEDQCNERNRELLAAV 486 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc------eEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 888899999888999999999999999999999999999988753 78999998531 1 13566666
Q ss_pred hhhcCe-EeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhh
Q 012718 400 DQQYGV-ATRSGHHCAQPLHRYLGVNASARASLH-FYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 400 ~~~~gi-~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.+. |. ++.+. .+....++|+++. +.++++||+.+++.|.+..+++-
T Consensus 487 ~~~-G~~~vs~t---------~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 487 NST-GKIFISHT---------ALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFT 534 (539)
T ss_pred HhC-CCEEEEee---------EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 666 44 33322 2344568999875 66789999999999999887664
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=223.22 Aligned_cols=336 Identities=17% Similarity=0.222 Sum_probs=224.5
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
...||++++...+.++.+.+.... . . +.+.++.-......++++.+|+++|++. .+++++|+.|+..+
T Consensus 29 ~~pi~~~~~~~~~~~~~~~~~~~~---~----~--~~~~y~r~~~p~~~~Le~~lA~l~G~~~---~~~~~sG~~Ai~~~ 96 (398)
T PRK07504 29 SEALFLTQGFVYDTAEAAEARFKG---E----D--PGFIYSRYSNPTVDMFEKRMCALEGAED---ARATASGMAAVTAA 96 (398)
T ss_pred cCCeECCCCccCCCHHHHHHHhcc---C----c--CCceeecCCCchHHHHHHHHHHHhCCCe---eeEecCHHHHHHHH
Confidence 456999999887766655432211 1 0 1111111113345678899999999974 34577889999887
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL 225 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~ 225 (458)
+.++ +++||+|+++.+.|.+....+...++..|++++.++. +|++++++++++++++|++++++||+|.+.
T Consensus 97 l~~~----l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~-----~d~e~l~~ai~~~tklV~lesp~NptG~v~ 167 (398)
T PRK07504 97 ILCQ----VKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG-----LDLDNWEKAVRPNTKVFFLESPTNPTLEVI 167 (398)
T ss_pred HHHH----hCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC-----CCHHHHHHhcCcCceEEEEECCCCCCcEec
Confidence 7765 6899999999999998876667777778999998862 489999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCc--e-eEEEEecccccc-CCCccccCcceE
Q 012718 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG--I-GFLFGKSDLLSA-MPPFLGGGEMIS 301 (458)
Q Consensus 226 ~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g--~-G~l~~~~~~~~~-l~~~~~g~~~~~ 301 (458)
|+++|.++|+++|+++|+|++|+.+... ...+.++|+++.|++|+++++| + |+++.+++.+.. +..+..
T Consensus 168 dl~~I~~la~~~gi~lvvD~a~a~~~~~-~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~------ 240 (398)
T PRK07504 168 DIAAVAKIANQAGAKLVVDNVFATPLFQ-KPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFR------ 240 (398)
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccC-CchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHH------
Confidence 9999999999999999999999877653 2335679999999999887655 4 677776665432 221111
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSEH---- 376 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~---- 376 (458)
.....++....+.+...|+. +....++..+++..+.+.|++.|++. +..|.-...
T Consensus 241 ---------------~~g~~~s~~~A~~~l~~L~t-----l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~ 300 (398)
T PRK07504 241 ---------------HTGPSLSPFNAWTLLKGLET-----LPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQAD 300 (398)
T ss_pred ---------------HhCCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHH
Confidence 00112333233333233333 34455555688999999999887765 433321111
Q ss_pred ------CccccEEEEEeCCCChHH---HHHHHhhhcCeEeccCCCCCh--------------hhHhhcCC-CCeEEEeeC
Q 012718 377 ------VQRAALCSFNVENIHPTD---IATLLDQQYGVATRSGHHCAQ--------------PLHRYLGV-NASARASLH 432 (458)
Q Consensus 377 ------~~~~~~v~~~~~~~~~~~---~~~~l~~~~gi~~~~g~~~~~--------------~~~~~~g~-~~~lRis~~ 432 (458)
...+++++|.+.+ ..++ +.+.|.-- .+.++-|...+- ......|. ++.+|+|++
T Consensus 301 ~~~~~~~g~g~~~s~~~~~-~~~~~~~~~~~l~~~-~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG 378 (398)
T PRK07504 301 IIAKQMTGGSTLVAFELKG-GKEAAFRFLNALKIV-RISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAG 378 (398)
T ss_pred HHHHhCCCCccEEEEEeCC-CHHHHHHHHHhCCcc-eecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEec
Confidence 1236799999964 2333 33333311 232333332111 11123444 578999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhh
Q 012718 433 FYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 433 ~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
. ||.+.+++.|.+++++++
T Consensus 379 l----E~~~dl~~dl~~al~~~~ 397 (398)
T PRK07504 379 L----EDTDDLIEDLAAALKKVR 397 (398)
T ss_pred c----CCHHHHHHHHHHHHHhhh
Confidence 8 788888888888887654
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-27 Score=225.57 Aligned_cols=300 Identities=15% Similarity=0.154 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+++++.+|+++|.+ ..+++++|+.|+..++.++ +++||+|+++.+.|+++...+...+...|++++.++.
T Consensus 63 p~~~~le~~lA~l~g~~---~av~~~sG~~Ai~~al~al----~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 63 PTVRAFEEMLAKLEGAE---DARGFASGMAAISSTVLSF----VEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred hhHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 44778899999999987 3455577788999888876 7899999999999998877777778888999999975
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. |++++++++ +++++|++++++|+++.+.|+++|.++|+++|+++|+|++|+.+..... ...+.|+++.|++|
T Consensus 136 ~-----d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p-~~~g~Divv~S~tK 208 (389)
T PRK05968 136 R-----DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRP-ITLGVDLVIHSASK 208 (389)
T ss_pred C-----CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCc-hhcCCcEEEeeccc
Confidence 4 889999888 6789999999999999999999999999999999999999987754222 24678999999999
Q ss_pred CCC-CCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 271 MCG-PTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 271 ~~g-p~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
.++ +.+ .|+++.++++++++......+ ..+..+......+ +..++. +....+
T Consensus 209 ~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~--------------------~g~~~~~~~A~~~---l~~L~t--l~~r~~ 263 (389)
T PRK05968 209 YLGGHSDTVAGVVAGSKEHIARINAEAYPY--------------------LGAKLSPFEAWLL---LRGLRT--LPLRMK 263 (389)
T ss_pred cccCCCCeEEEEEEECHHHHHHHHHHHHHh--------------------CCCCCChHHHHHH---HcccCc--HHHHHH
Confidence 665 444 688888887766554321100 0112232222222 233333 344556
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCC------CcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCC------
Q 012718 348 YEMELAKYLYENLLSIPNIRIYGPKPS------EHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCA------ 414 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~~~~~~~~~------~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~------ 414 (458)
+..++++++.+.|+++|+++.+..+.. ....++++++|.+. +.+..++.+.|... ++.++-|.+++
T Consensus 264 ~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~-~~~~s~G~~~slv~p~~ 342 (389)
T PRK05968 264 AHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLF-RLGVSWGGHESLVVPAE 342 (389)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCcc-EEecCCCCCCceeeeCc
Confidence 666779999999999988865443211 00134679999997 44566788888765 88888787776
Q ss_pred --------hhhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 415 --------QPLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 415 --------~~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
......+|. ++.+|+|+++ ||.+.+++.|++++++.
T Consensus 343 ~~~~~~~~~~~~~~~gi~~~liR~SvGl----E~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 343 VVLQQKAQPNSAARFGVSPRSVRLHVGL----EGTEALWADLEQALAAA 387 (389)
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHHh
Confidence 222334555 6799999998 55666666666666544
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=223.25 Aligned_cols=302 Identities=19% Similarity=0.244 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 109 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
.....+++++.+|++.|.+ ..++++||++|+..++.++ +++||.|+++.++|.+....+...++..|++++.+
T Consensus 62 ~~p~~~~le~~lA~l~g~~---~~i~~ssG~~Ai~~~l~al----l~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~v 134 (398)
T PRK08249 62 TNPTVQAFEEKVRILEGAE---AATAFSTGMAAISNTLYTF----LKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLC 134 (398)
T ss_pred CChHHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHh----cCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEc
Confidence 3556678999999999976 5677778889999999877 78999999999999987766777677889998887
Q ss_pred eCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
+. .|++.+++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.....+ ..++|+++.|+
T Consensus 135 d~-----~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~~~~Divv~S~ 208 (398)
T PRK08249 135 ET-----GDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPL-ALGADLVIHSA 208 (398)
T ss_pred CC-----CCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCch-hhCCCEEeccC
Confidence 64 3899999999999999999999999999999999999999999999999999966542222 46799999999
Q ss_pred cCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 269 HKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 269 ~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
+|++|+.| .|+++.++++++.+..+.. ...++.+......+...++.+ ...
T Consensus 209 sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~---------------------~~g~~~s~~~a~l~l~~l~tL-----~~R 262 (398)
T PRK08249 209 TKFLSGHADALGGVVCGSKELMEQVYHYRE---------------------INGATMDPMSAYLILRGMKTL-----KLR 262 (398)
T ss_pred ceecCCCCCceEEEEECCHHHHHHHHHHHH---------------------hcCCCCCHHHHHHHHhCcchH-----HHH
Confidence 99887654 5777777776665543221 111233333333333333333 334
Q ss_pred HHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCe---EeccCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSGH 411 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g~ 411 (458)
.++..++++.+.+.|++.|.++ +..|.-..+ ...+++++|.+.+ +.....+.+..- .+ .++-|.
T Consensus 263 ~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~-~~~~~~~f~~~l-~l~~~~~s~G~ 340 (398)
T PRK08249 263 VRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG-GMDTVKRLLPKL-RYAHRAANLGA 340 (398)
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC-CHHHHHHHHHhC-CcceEccCCCC
Confidence 4666788889999999887766 333321110 2457799999974 333333333322 33 222232
Q ss_pred CCC------hh--------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 412 HCA------QP--------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 412 ~~~------~~--------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
..+ .. .....|. ++.+|+|++. ||++.+++.|+++++.+.
T Consensus 341 ~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~~ 395 (398)
T PRK08249 341 VETIYGPARTTSHVENTLEERAALGIPEGLVRISVGI----EDTEDLIADLEQAFAHLE 395 (398)
T ss_pred CCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHHhh
Confidence 111 00 1112343 5789999998 788888888888887654
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=221.47 Aligned_cols=302 Identities=12% Similarity=0.140 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
....+++.+|++.+.. ++++++|+++|+..++.++ +++||+|+++++.|.+....+....++.|+++..++..
T Consensus 62 t~~~Le~~iA~le~~~---~~~~~~sG~~Ai~~~l~al----l~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 62 THFAFQAAIVELEGGA---GTALYPSGAAAISNALLSF----LKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred hHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC
Confidence 3457889999998765 7899999999999999887 78999999999999877654545556789998887643
Q ss_pred CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC
Q 012718 192 DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM 271 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 271 (458)
+.+.+++.+++++++|++++|+||+|.+.|+++|+++||++|+++++|++|+.+.. .+..++|+|+++.|.+|+
T Consensus 135 -----~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~-~~Pl~~GaDivv~S~tK~ 208 (394)
T PRK09028 135 -----IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN-SRPFEMGVDISIQAATKY 208 (394)
T ss_pred -----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc-CCccccCceEEEEeCCeE
Confidence 56789999999999999999999999999999999999999999999999998753 344478999999999997
Q ss_pred CCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Q 012718 272 CGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY 348 (458)
Q Consensus 272 ~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~ 348 (458)
+++++ .|+++.+++..+.+..... ....+.+......+...++. +....++
T Consensus 209 l~Gh~d~~~G~~~~~~~~~~~l~~~~~---------------------~~G~~~~p~~a~l~~rgl~T-----L~lR~~~ 262 (394)
T PRK09028 209 IVGHSDVMLGTATANEKHWDQLREHSY---------------------LMGQCTSPDDVYLAMRGLRT-----LGVRLAQ 262 (394)
T ss_pred ecCCCCEEEEEEECCHHHHHHHHHHHH---------------------hcCCCCCHHHHHHHHcccCc-----HHHHHHH
Confidence 76554 6776655554443332111 01123333333333333332 3445566
Q ss_pred HHHHHHHHHHHHhcCCCEE-EeCCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhh--cCeEeccCCCCCh
Q 012718 349 EMELAKYLYENLLSIPNIR-IYGPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQ--YGVATRSGHHCAQ 415 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~-~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~--~gi~~~~g~~~~~ 415 (458)
..+++..+.+.|++.|.++ +..|.-.. ....+++++|.+.+.+.....+.+..- +.+..+-|...+-
T Consensus 263 ~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~~~~slG~~~sL 342 (394)
T PRK09028 263 HEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESL 342 (394)
T ss_pred HHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEecccCCCcce
Confidence 6788888999999887664 44332110 023467999999732333333443322 1222232321110
Q ss_pred ----------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 416 ----------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 416 ----------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
......+. ++.||+|++. ||.+.+++.|.++++.++.
T Consensus 343 v~~p~~~~~~~~~~~~~~~~~liR~svGl----Ed~~dLi~Dl~~Al~~~~~ 390 (394)
T PRK09028 343 ILGVFGINKLRTATNWDFSKPLIRLHIGL----EDVDDLIADLEAGFERYNA 390 (394)
T ss_pred eECCCCcCccCchhhhcCCCCeEEEEeCc----CCHHHHHHHHHHHHHHHHH
Confidence 00111122 4689999998 7888888888888877654
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=223.57 Aligned_cols=297 Identities=22% Similarity=0.261 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.++++.|.+ ..++++||+.|+..++.++ +++||+|+++.+.|+++...+...++..|++++.++
T Consensus 39 ~p~~~~le~~la~l~g~~---~a~~~~sG~~Ai~~~l~~l----~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 111 (369)
T cd00614 39 NPTVDALEKKLAALEGGE---AALAFSSGMAAISTVLLAL----LKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVD 111 (369)
T ss_pred ChhHHHHHHHHHHHHCCC---CEEEEcCHHHHHHHHHHHH----cCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeC
Confidence 455678889999999975 6788889999999999988 689999999999999887777777778899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.+ |++++++.+++++++|++++++||+|.+.|+++|+++|+++|+++|+|++++.+.. ...-++++|+++.|++
T Consensus 112 ~~-----d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~-~~~~~~g~Divv~S~t 185 (369)
T cd00614 112 PD-----DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL-QRPLELGADIVVHSAT 185 (369)
T ss_pred CC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc-CChhhhCCcEEEeccc
Confidence 65 68999999988999999999999999999999999999999999999999998765 2223457999999999
Q ss_pred CCCCCCc---eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMCGPTG---IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~gp~g---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|.+|++| .|+++.++ ++++.+....... .++.+...... ++..++. +...
T Consensus 186 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~---------------------g~~~~p~~a~~---~l~~l~t--l~~r 239 (369)
T cd00614 186 KYIGGHSDVIAGVVVGSGEALIQRLRFLRLAL---------------------GTILSPFDAWL---LLRGLKT--LPLR 239 (369)
T ss_pred eeccCCCCceEEEEEeCcHHHHHHHHHHHHhh---------------------CCCCCHHHHHH---HHcCCCC--HHHH
Confidence 9777654 79999987 6666555332110 11233322222 2233322 4555
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEE-eCCCC-C---------CcCccccEEEEEeCCCChHHHHHHHhhhcCeE---eccCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIRI-YGPKP-S---------EHVQRAALCSFNVENIHPTDIATLLDQQYGVA---TRSGH 411 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~-~~~~~-~---------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~---~~~g~ 411 (458)
.++..++++++.+.|++.+++.. ..|.- . .....+++++|.+.+ +..+..+.+..- .+. .+-|.
T Consensus 240 ~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~-~~~~~~~f~~~l-~~~~~~~s~G~ 317 (369)
T cd00614 240 MERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG-GLEAAKKFLNAL-KLFSLAVSLGG 317 (369)
T ss_pred HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC-CHHHHHHHHHcC-CcceEcccCCC
Confidence 67778899999999998876643 22310 0 002347799999975 444444444433 443 12222
Q ss_pred ------------CCChh--hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 412 ------------HCAQP--LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 412 ------------~~~~~--~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
++..+ .....|. ++.+|+|++. ||++.+++.|++++
T Consensus 318 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al 368 (369)
T cd00614 318 VESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL 368 (369)
T ss_pred CceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 11111 1123454 5799999997 78888888888775
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-27 Score=225.40 Aligned_cols=298 Identities=17% Similarity=0.197 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
..+++++.+|++.|.+ ..++++||+.|+..++.++ +++||+|+++.+.|.+....+...++..|+++..++..
T Consensus 62 t~~~Le~~lA~l~G~~---~al~~~sG~~Ai~~~l~al----~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~ 134 (386)
T PRK06767 62 TVKLFEERMAVLEGGE---EALAFGSGMAAISATLIGF----LKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDME 134 (386)
T ss_pred chHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCC
Confidence 3567889999999975 4566777788999998887 68999999999999987766666677778877777653
Q ss_pred CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC
Q 012718 192 DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM 271 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 271 (458)
|++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.....+ ..++|+++.|++|+
T Consensus 135 -----d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl-~~g~Div~~S~sK~ 208 (386)
T PRK06767 135 -----TEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPL-ELGCDAVVHSATKY 208 (386)
T ss_pred -----CHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCcEEEecCcce
Confidence 889999999889999999999999999999999999999999999999999866553333 45789999999998
Q ss_pred CCCCc---eeEEEEeccccccCC-CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 272 CGPTG---IGFLFGKSDLLSAMP-PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 272 ~gp~g---~G~l~~~~~~~~~l~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
+++.| .|+++.+++.++.+. ...... .+..+....+. ++..+.. +....+
T Consensus 209 l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~---------------------g~~~~~~~a~l---~~~~L~t--l~~r~~ 262 (386)
T PRK06767 209 IGGHGDVVAGVTICKTRALAEKIRPMRKDI---------------------GGIMAPFDAWL---LLRGLKT--LAVRMD 262 (386)
T ss_pred ecCCCCceeEEEEeChHHHHHHHHHHHHHh---------------------CCCCCHHHHHH---HHcCCCc--HHHHHH
Confidence 87666 699999887665432 111100 11222222222 2222222 344557
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeC-CCCC----CcCccccEEEEEeCCC--ChHHHHHHHhhhcCeEeccCCCCCh-----
Q 012718 348 YEMELAKYLYENLLSIPNIRIYG-PKPS----EHVQRAALCSFNVENI--HPTDIATLLDQQYGVATRSGHHCAQ----- 415 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~~~~~-~~~~----~~~~~~~~v~~~~~~~--~~~~~~~~l~~~~gi~~~~g~~~~~----- 415 (458)
+.+++++++.+.|+++|+++... |... .....+++++|.+++. +..++.+.|... ++.++-|...+-
T Consensus 263 ~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~-~~~~s~G~~~sl~~~p~ 341 (386)
T PRK06767 263 RHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFI-TIAVSLGDTETLIQHPA 341 (386)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCcc-EEecCCCCcCccccCCC
Confidence 77899999999999999887433 3111 0013467999999742 355777777755 777766652221
Q ss_pred -hhH--------hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 416 -PLH--------RYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 416 -~~~--------~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
..+ ...|. ++.+|+|++. ||++.+++.|.++++.
T Consensus 342 ~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~~ 385 (386)
T PRK06767 342 TMTHAAIPAELRQEMGIYDNLIRLSVGL----ESWEDIVSDLEQALKK 385 (386)
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence 011 12343 5789999998 7888889988888864
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=222.79 Aligned_cols=298 Identities=19% Similarity=0.207 Sum_probs=214.7
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
..+++++.+++++|.+ +++++++++.|+..++. + +++||+|+++++.|.++...+...+++.|++++.++..
T Consensus 48 ~~~~le~~la~l~g~~---~~l~~~sG~~al~~~l~-l----l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~ 119 (378)
T TIGR01329 48 TRTALESLLAKLDKAD---RAFAFSSGMAALDVITR-L----LNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT 119 (378)
T ss_pred HHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHH-H----hCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC
Confidence 3568889999999984 66777777889988776 4 68999999999999988777777788889999999874
Q ss_pred CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC
Q 012718 192 DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM 271 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 271 (458)
|++++++++++++++|++++++||+|.+.|+++|+++||++|+++|+|++++.+.....+ ++++|++++|++|+
T Consensus 120 -----d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l-~~g~Di~v~S~tK~ 193 (378)
T TIGR01329 120 -----DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL-ELGADIVYHSATKF 193 (378)
T ss_pred -----CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCcEEEEeccee
Confidence 889999999999999999999999999999999999999999999999999877653333 55899999999995
Q ss_pred -CCCCc--eeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 272 -CGPTG--IGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 272 -~gp~g--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
.|+.+ .|+++++++. .+++.+.....+ ...+...... .+..++ .++...+
T Consensus 194 l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G---------------------~~~~~~~a~l---~~~~l~--tl~~R~e 247 (378)
T TIGR01329 194 LAGHSDVMAGVLAVKGEEIAKKVYFLQNSTG---------------------SGLAPFDCWL---LLRGIK--TLAIRIE 247 (378)
T ss_pred ccCCccceeEEEEeCcHHHHHHHHHHHHhcC---------------------CcCCHHHHHH---HHccCC--CHHHHHH
Confidence 55666 8999886643 344543322101 1112111111 112221 2455566
Q ss_pred HHHHHHHHHHHHHhcCCCEE-EeCCCCC----------CcCccccEEEEEeCCCC-hHHHHHHHhhhcCeEeccCCCCCh
Q 012718 348 YEMELAKYLYENLLSIPNIR-IYGPKPS----------EHVQRAALCSFNVENIH-PTDIATLLDQQYGVATRSGHHCAQ 415 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~~-~~~~~~~----------~~~~~~~~v~~~~~~~~-~~~~~~~l~~~~gi~~~~g~~~~~ 415 (458)
+..+++..+.+.|++.|.+. +..|.-. ....++++++|.+.+.. ..++...|.. +++.++.|...+-
T Consensus 248 ~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~-~~i~~s~G~~~sl 326 (378)
T TIGR01329 248 KQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKL-FSITVSFGSVNSL 326 (378)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcC-cccccCCCCCCce
Confidence 66777888888888776553 3222211 01245789999995433 5578888854 4888777663221
Q ss_pred ------h--------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 416 ------P--------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 416 ------~--------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
. .....|. ++.+|+|++. ||++.+++.|+++++++
T Consensus 327 ~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 327 ISMPCFMSHASIPAEVREERGLPEDLVRLSVGI----EDVDDLISDLDIAFVTA 376 (378)
T ss_pred eeCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhc
Confidence 0 1123443 5799999997 88999999999888754
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=210.67 Aligned_cols=295 Identities=16% Similarity=0.165 Sum_probs=199.3
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
.+++.|+.+.....|+.+.+++.+.+.....++ . ...+++++++++|. +|++|+|+++++.++
T Consensus 8 ~~~i~l~~~~np~~p~~~~~a~~~~~~~~~~yp----~---------~~~l~~~ia~~~~~----~I~vt~G~~~al~~~ 70 (311)
T PRK08354 8 EGLIDFSASVNPYPPEWLDEMFERAKEISGRYT----Y---------YEWLEEEFSKLFGE----PIVITAGITEALYLI 70 (311)
T ss_pred cceeEecCCCCCCCCHHHHHHHHHHHHHhhcCC----C---------hHHHHHHHHHHHCC----CEEECCCHHHHHHHH
Confidence 567889988666567888888887755432211 0 23578999999982 799999999999988
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL 225 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~ 225 (458)
+..+ .+||+|++++|+|+ .+...++..|++++.++ +|++.+++.++ +++++++++|+||||.++
T Consensus 71 ~~~~-----~~gd~vlv~~P~y~----~~~~~~~~~g~~~~~~~------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~ 134 (311)
T PRK08354 71 GILA-----LRDRKVIIPRHTYG----EYERVARFFAARIIKGP------NDPEKLEELVE-RNSVVFFCNPNNPDGKFY 134 (311)
T ss_pred HHhh-----CCCCeEEEeCCCcH----HHHHHHHHcCCEEeecC------CCHHHHHHhhc-CCCEEEEecCCCCCCCcc
Confidence 7543 48999999999999 55777788899997764 37888988876 567899999999999999
Q ss_pred c---HHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcce
Q 012718 226 P---IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMI 300 (458)
Q Consensus 226 ~---l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~ 300 (458)
+ +++|+++|+++|+++|+|++|..-...-.....+..+++.|+||.||.+| +||+++ ..+.+......
T Consensus 135 ~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~~---- 207 (311)
T PRK08354 135 NFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVRMP---- 207 (311)
T ss_pred CHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcCCC----
Confidence 9 56777888999999999999963221111112346788899999999777 899998 22222221110
Q ss_pred EeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH---HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcC
Q 012718 301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH---AYEMELAKYLYENLLSIPNIRIYGPKPSEHV 377 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~---~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~ 377 (458)
.+.+..+..++...++ . +.+.+. +.+.+.++.+.+.+ .. ++ .
T Consensus 208 -------------------~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~~~l-------~~-~~-~--- 252 (311)
T PRK08354 208 -------------------WSIGSTGYAFLEFLIE---D-DFEHLRKTMPLIWREKERFEKAL-------YV-KS-D--- 252 (311)
T ss_pred -------------------ccCCHHHHHHHHHHHH---h-HHHHHHHHHHHHHHHHHHHHHhc-------CC-CC-C---
Confidence 1122222222222222 1 122222 22222222222221 11 21 1
Q ss_pred ccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 378 QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 378 ~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
++++++.++ +..++.+.|.++ ||.+++|..+ +.++++||+++ ..++.++++++|++++
T Consensus 253 --~~~~~~~~~--~~~~~~~~l~~~-gv~v~~g~~f--------~~~~~iRi~~~---~~~~~~~l~~al~~~~ 310 (311)
T PRK08354 253 --ANFFIKDVG--DAEKFVEFLKRN-GILVRDCTSF--------GLPGYIRFSVR---DREENEKLIRALREWR 310 (311)
T ss_pred --CcEEEEECC--CHHHHHHHHHHC-CeEEEecccC--------CCCCeEEEEeC---CHHHHHHHHHHHHHhh
Confidence 566666654 467899998887 9999998743 33689999999 5678888888888753
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=220.33 Aligned_cols=303 Identities=20% Similarity=0.219 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
.....+++.+|++.|.+ ++++++|+++|+.+++.++ +++||+|+++.+.|.+....+.....+.|++++.++.
T Consensus 53 pt~~~Le~~lA~leg~e---~ivvt~gg~~Ai~~~l~al----l~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 125 (388)
T PRK08861 53 PNRGLLEQTLSELESGK---GAVVTNCGTSALNLWVSAL----LGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125 (388)
T ss_pred chHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHH----cCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC
Confidence 34557889999999964 8999999999999999988 6899999999999997766666666667888888864
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
.|++++++++++++++|++++|+||||.+.|+++|.++|+++|+++++|++|+.+.....+ +.++|+++.|+||
T Consensus 126 -----~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl-~~GaDivv~S~tK 199 (388)
T PRK08861 126 -----SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPL-ELGADFVIHSTTK 199 (388)
T ss_pred -----CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCc-ccCCCEEEeecce
Confidence 3889999999999999999999999999999999999999999999999999987653333 5689999999999
Q ss_pred CCC-CCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 271 MCG-PTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 271 ~~g-p~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
+++ +.+ .|+++.++ ++.+.+..... ....+.++.....+...++. +....
T Consensus 200 ~l~G~~d~~gG~i~~~~~~~~~~~~~~~~---------------------~~G~~~~p~~a~l~~rgl~T-----l~lR~ 253 (388)
T PRK08861 200 YINGHSDVIGGVLITKTKEHAEELAWWGN---------------------CIGATGTPFDSYMTLRGIRT-----LGARM 253 (388)
T ss_pred eccCCCcceeEEEEecHHHHHHHHHHHHh---------------------ccCCCCChHHHHHHHhcCCC-----HHHHH
Confidence 665 444 67777754 34333331111 00122233222222222222 33344
Q ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhh--cCeEeccCCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIR-IYGPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQ--YGVATRSGHHC 413 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~--~gi~~~~g~~~ 413 (458)
++..+.+..+.+.|++.|.+. +..|.-.. ....+++++|.+.+ +.++..+.+..- +.+.++-|...
T Consensus 254 ~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~-~~~~~~~f~~~l~l~~~~~s~G~~~ 332 (388)
T PRK08861 254 RVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG-SFEQLKVFVKALALFSLAESLGGVE 332 (388)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC-CHHHHHHHHhcCCcceEccCCCCCc
Confidence 566677888888888887765 43332110 12456799999974 333333333322 12233333311
Q ss_pred C------h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 414 A------Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 414 ~------~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
+ . ......|. ++.||+|++. ||++.+++.|+++++++.+.
T Consensus 333 sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----E~~~dli~Dl~~al~~~~~~ 387 (388)
T PRK08861 333 SLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGL----EDAQDLIADLDQAFAKAAEA 387 (388)
T ss_pred ceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHHHHHhc
Confidence 1 1 11123444 5689999998 88999999999998877653
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=216.20 Aligned_cols=269 Identities=16% Similarity=0.119 Sum_probs=198.3
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC
Q 012718 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD 193 (458)
Q Consensus 114 ~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~ 193 (458)
..+|++++++++.+ +|++|+|+++++.+++. +.+||+|++++|+|+ .+...++..|++++.++.+
T Consensus 52 ~~Lr~~ia~~~~~~---~I~it~Gs~~al~~~~~------~~~gd~v~v~~P~y~----~~~~~~~~~g~~~~~v~~~-- 116 (330)
T PRK05664 52 DGLEAAARAYYGAP---QLLPVAGSQAAIQALPR------LRAPGRVGVLSPCYA----EHAHAWRRAGHQVRELDEA-- 116 (330)
T ss_pred HHHHHHHHHHhCCC---CEEECcCHHHHHHHHHH------ccCCCEEEEcCCChH----HHHHHHHHcCCeEEEechh--
Confidence 47899999999864 89999999999998863 468999999999999 5577778889999999763
Q ss_pred CCCCHHHHHHhhcCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc--c-CCCCCCCCcEEEec
Q 012718 194 ESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--V-VDVQGLDADFLVAS 267 (458)
Q Consensus 194 ~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~--~-~~~~~~~~d~~~~s 267 (458)
++++.+ ++++++++++|+||||.+++ +++|+++|+++|++||+|++|..... + ..+...+..+++.|
T Consensus 117 ------~~~~~~-~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~S 189 (330)
T PRK05664 117 ------EVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRS 189 (330)
T ss_pred ------hHhhhh-cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEee
Confidence 345555 36778899999999999999 45666677899999999999963321 1 12322234588999
Q ss_pred ccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 268 SHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 268 ~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
+||.+|.+| +||+++++++++.+......+ +.+.....++..+|+.... .++.
T Consensus 190 fSK~~gl~GlRiG~~v~~~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~L~~~~~--~~~~ 244 (330)
T PRK05664 190 FGKFFGLAGARLGFVLAEPALLRALAELLGPW-----------------------TVSGPTRWLAQAALADTPW--QRRQ 244 (330)
T ss_pred ccccccCCCcceEEEEeCHHHHHHHHHhcCCC-----------------------CCCHHHHHHHHHHHhChHH--HHHH
Confidence 999999777 999999988877665332111 1222333444445543222 3567
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
++.+.+.++++.+.|+++ +++ +.+ ....+++++++ +..++.+.|.++ ||.++.. +.++
T Consensus 245 ~~~~~~~r~~l~~~L~~~-~~~---~~~----~~~~f~~~~~~--~~~~~~~~l~~~-gi~v~~f-----------~~~~ 302 (330)
T PRK05664 245 RERLLAASQRLAALLRRH-GLT---PAG----GCALFQWVRTE--DAAALHEFLARR-GILTRLF-----------EQPA 302 (330)
T ss_pred HHHHHHHHHHHHHHHHHC-CCc---ccC----CcceEEEEecC--CHHHHHHHHHHC-CeEEEEC-----------CCCC
Confidence 788888899999999887 543 221 11357788765 568899999888 9999731 1257
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++||+++. +.++++++++.|+++.++
T Consensus 303 ~iRis~~~--~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 303 SLRFGLPA--DEADWARLDQALLAYRKE 328 (330)
T ss_pred eEEEECCC--CHHHHHHHHHHHHHHHhh
Confidence 99999993 678999999999887765
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-26 Score=220.50 Aligned_cols=323 Identities=16% Similarity=0.206 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.+|++.|.+ ..++|+|||+|+++++.++ +++||+|+++..+|.++...+.....+.|++++.++
T Consensus 63 ~p~~~~le~~lA~l~g~~---~av~~sSGt~Al~~al~~l----l~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd 135 (433)
T PRK08134 63 NPTVAVLEERVAALEGGV---GAIATASGQAALHLAIATL----MGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVK 135 (433)
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH----hCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEEC
Confidence 355778899999999987 5689999999999999887 689999999999999877666665677899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.+ |++++++.|+++|++|++++++||+|.+.|+++|+++||++|+++|+|++++.|.....+ ++++|+++.|.|
T Consensus 136 ~~-----d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl-~~GaD~vv~S~t 209 (433)
T PRK08134 136 PG-----DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF-EHGADLVYHSAT 209 (433)
T ss_pred CC-----CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCEEEeccc
Confidence 75 899999999999999999999999999999999999999999999999999988875444 789999999999
Q ss_pred CCCCCCc--eeEEEEec-c-------ccccCCCccccCcceEee-ecCCCCC-CCC---CCccCCCCCCHHHHHHHHHHH
Q 012718 270 KMCGPTG--IGFLFGKS-D-------LLSAMPPFLGGGEMISDV-FLDHSTF-ADP---PSRFEAGTPAIGEAIGLGAAI 334 (458)
Q Consensus 270 K~~gp~g--~G~l~~~~-~-------~~~~l~~~~~g~~~~~~~-~~~~~~~-~~~---~~~~~~gt~~~~~~~~l~~al 334 (458)
|++|++| +|.+++.. . .+..+.+...+|...... ......+ ... ..+...+..+....+.+.
T Consensus 210 K~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~--- 286 (433)
T PRK08134 210 KFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLL--- 286 (433)
T ss_pred cccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHh---
Confidence 9988877 55555532 1 112222222222111000 0000000 000 000001122222222221
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc-----------CccccEEEEEeCCCChHHHHHHHhhh
Q 012718 335 DYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSEH-----------VQRAALCSFNVENIHPTDIATLLDQQ 402 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~~~l~~~ 402 (458)
.-++. ++...++..+++..+.+.|+++|.+. +..|.-..+ ...+++++|.+.+ +..+..+.+..-
T Consensus 287 ~gL~t--l~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~-~~~~~~~f~~~l 363 (433)
T PRK08134 287 QGIET--LPLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKG-GRAAGRKFIESL 363 (433)
T ss_pred cCCCc--HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecC-CHHHHHHHHHhC
Confidence 22222 45566777788889999999887765 333221110 2356799999974 233333333322
Q ss_pred cCe---EeccCCCCC----h----------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 403 YGV---ATRSGHHCA----Q----------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 403 ~gi---~~~~g~~~~----~----------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+ ..+-|...+ + ......|. ++.||+|++. ||++.+++.|+++++++++
T Consensus 364 -~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl----E~~~dli~dl~~Al~~~~~ 430 (433)
T PRK08134 364 -KLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGL----EDADDLIDDLKRALKAAEK 430 (433)
T ss_pred -CcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhhhh
Confidence 33 222232111 0 11123454 5789999998 7888899999998887654
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-26 Score=219.66 Aligned_cols=299 Identities=20% Similarity=0.209 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+.+++.+|++.|.+ ..++++||++|+.+++.++ +++||+|+++.+.|++....+..+++..|.+++.++.
T Consensus 60 p~~~~Le~~lA~l~g~~---~~v~~~sG~~Ai~~~l~al----l~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 60 PTRDLLGEALAELEGGA---GGVITATGMGAINLVLNAL----LQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL 132 (405)
T ss_pred hHHHHHHHHHHHHhCCC---ceEEEcCHHHHHHHHHHHH----hCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC
Confidence 34557889999999975 3466777789999999988 7899999999999998776677777778888888875
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. |++++++.+++++++|++++++||||.+.++++|+++|+++|+++|+|++|+.+.....+ .+++|+++.|.+|
T Consensus 133 ~-----d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl-~~gaDivv~S~tK 206 (405)
T PRK08776 133 T-----DPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPL-EFGADLVLHSTTK 206 (405)
T ss_pred C-----CHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcc-cccCCEEEecCce
Confidence 3 889999999889999999999999999999999999999999999999999877542223 4689999999999
Q ss_pred CCC-CCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 271 MCG-PTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 271 ~~g-p~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
+++ +.+ .|+++.++ ++.+++..... ....+.+......+...+++ ++...
T Consensus 207 ~l~g~~~~~~G~vv~~~~~l~~~l~~~~~---------------------~~g~~~s~~~a~l~~~gl~t-----l~~r~ 260 (405)
T PRK08776 207 YINGHSDVVGGAVVARDAELHQQLVWWAN---------------------ALGLTGSPFDAFLTLRGLRT-----LDARL 260 (405)
T ss_pred eecCCCCceEEEEEeCCHHHHHHHHHHHH---------------------hcCCCCCHHHHHHHHhhhCc-----HHHHH
Confidence 766 444 67777754 44443331111 00112333333333333333 45567
Q ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCe---EeccCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSGHH 412 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g~~ 412 (458)
++..+++..+.+.|++.|.+. +..|.-..+ ...+++++|.+.+ +.++..+.+..- .+ ..+-|..
T Consensus 261 ~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l-~l~~~~~s~G~~ 338 (405)
T PRK08776 261 RVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG-GEAAVRAFVDGL-RYFTLAESLGGV 338 (405)
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC-CHHHHHHHHHhC-CcceEccCCCCC
Confidence 778888999999999888765 333321111 2456799999975 333333333322 33 2232321
Q ss_pred CC------hh--------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 413 CA------QP--------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 413 ~~------~~--------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+ .. .....|. ++.+|+|++. ||++.+++.|+++++++
T Consensus 339 ~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~al~~~ 391 (405)
T PRK08776 339 ESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGI----ESAEDLLIDLRAGLARA 391 (405)
T ss_pred ceEEECCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHHHh
Confidence 11 10 1123444 5789999998 67777777777777654
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=224.44 Aligned_cols=357 Identities=17% Similarity=0.138 Sum_probs=221.8
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-----CC--CC--CCcEEEe
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-----NA--SD--SGEIVFT 135 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----g~--~~--~~~v~~t 135 (458)
.+.+.+..+..+ ++|+.+.+ +.+.+... .++. .....++|+++++.+ +. .+ +++|++|
T Consensus 100 ~~~i~l~~g~p~~~~~~~v~e-~~~~~~~~-~Y~~----------~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT 167 (527)
T PRK09275 100 RDAVSYVRDQLGFDADEFVYE-LVDGIIGD-NYPV----------PDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAV 167 (527)
T ss_pred HHHHhhcCCCCCCCCCHHHHH-HHHHHhcC-CCCC----------CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEe
Confidence 456777777777 45666666 44444321 1111 122335555555522 11 12 2389999
Q ss_pred CChhHHHHHHHHHcCC-CCCCCCCEEEEcCCCCccchHHHHHHHHHcC--CeEEEEeCCC--CCCCCHHHHHHhhcCCce
Q 012718 136 KNATEAINLVAYSWGL-SNLKSGDEVILTVAEHHSAIVPWQLVAQKTG--ANLKFLNLND--DESPDLDKLKEMLSRKTK 210 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~-~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g--~~~~~v~~~~--~~~~d~~~l~~~l~~~~~ 210 (458)
+|+++|+..++.++.. ..+++||+|++++|.|+ .+...++..| .+++.++.++ ++.+|++.++++++++++
T Consensus 168 ~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~----~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tk 243 (527)
T PRK09275 168 EGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFT----PYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIK 243 (527)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChH----HHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCC
Confidence 9999999999886310 02789999999999999 4565555554 5555565543 367899999999999999
Q ss_pred EEEEecccCcCccccc---HHHHHHHHHh--cCcEEEEeccccCCcc-cCCCC--CCCCcEEEecccCCCCCCc--eeEE
Q 012718 211 LVVIHHISNMLASILP---IEEIVHWSHD--VGAKVLVDACQSVPHM-VVDVQ--GLDADFLVASSHKMCGPTG--IGFL 280 (458)
Q Consensus 211 ~v~~~~~~n~tG~~~~---l~~i~~l~~~--~~~~vivD~a~~~g~~-~~~~~--~~~~d~~~~s~~K~~gp~g--~G~l 280 (458)
+|++++|+||||.+++ +++|+++|++ ++++||+|++|+.-.. ...+. ..+..+++.|+||.||.+| +||+
T Consensus 244 ai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i 323 (527)
T PRK09275 244 ALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGVI 323 (527)
T ss_pred EEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHHhhh
Confidence 9999999999999999 7788888954 5999999999973211 11111 1135788999999999989 9999
Q ss_pred EEecc-----ccccCC--------CccccCcceEe--eecCC--CCCCCCCCccCCCCCCHHHHH-H---HHHHHHHHHH
Q 012718 281 FGKSD-----LLSAMP--------PFLGGGEMISD--VFLDH--STFADPPSRFEAGTPAIGEAI-G---LGAAIDYLST 339 (458)
Q Consensus 281 ~~~~~-----~~~~l~--------~~~~g~~~~~~--~~~~~--~~~~~~~~~~~~gt~~~~~~~-~---l~~al~~~~~ 339 (458)
+++++ +++.+. ..+..-..... .+.+. .+..........|.+.+.+.+ + +.++++....
T Consensus 324 ~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~~~ 403 (527)
T PRK09275 324 ALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEEDA 403 (527)
T ss_pred hcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCchH
Confidence 99886 444331 00000000000 00000 000000011123444444443 2 2222332122
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----------------CChHHHHHHHhhh
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----------------IHPTDIATLLDQQ 402 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------------~~~~~~~~~l~~~ 402 (458)
-.+..++.++++++.+.+.| ++.+...++ ..+.+++++++. .+..+++.+|.++
T Consensus 404 -~~~~~~~~~~~Rr~~l~~~L----g~~~~~~~p----~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e 474 (527)
T PRK09275 404 -YKKAMKDIIRRRYKALYEGL----GLPEPEDPN----NAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEE 474 (527)
T ss_pred -HHHHHHHHHHHHHHHHHHHc----CCCCcCCCC----CeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhc
Confidence 14567777888888888877 222221111 114467777642 2466788888877
Q ss_pred cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 403 YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 403 ~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.||.+.||..+.. .++++|+|+.. .+++++.++.++|.+++++..
T Consensus 475 ~gV~v~PG~~Fg~-------~~~~vRis~a~-~~~~~~~~~~~rl~~~l~~y~ 519 (527)
T PRK09275 475 TGVVLLPGGGFGG-------PEWSVRVSLAN-LNEEDYAKIGKAIRKLLDEYY 519 (527)
T ss_pred CCEEEeCchhhCC-------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHH
Confidence 7999999984421 15789999984 478999999999999987654
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=216.22 Aligned_cols=272 Identities=17% Similarity=0.170 Sum_probs=200.1
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC
Q 012718 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD 193 (458)
Q Consensus 114 ~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~ 193 (458)
.++++.+|+++|.++.++|++|+|+++++.++.. + +++|+ |++++|+|. .+...++..|++++.++.++
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~----~~~g~-v~v~~P~y~----~y~~~~~~~g~~~~~v~~~~- 124 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-L----LPRGR-VGIAPLAYS----EYAPAFARHGHRVVPLDEAA- 124 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-h----cCCCe-EEEcCCCcH----HHHHHHHHCCCEEEeecccc-
Confidence 4899999999999854599999999999987654 3 46676 888999999 56777788899999888653
Q ss_pred CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHH---HHhcCcEEEEeccccCCcccC---CCCCCCCcEEEec
Q 012718 194 ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW---SHDVGAKVLVDACQSVPHMVV---DVQGLDADFLVAS 267 (458)
Q Consensus 194 ~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l---~~~~~~~vivD~a~~~g~~~~---~~~~~~~d~~~~s 267 (458)
+. +.+.++++++++|+||||.+++.+++.++ |++++.++|+|++|.-..... .+......+++.|
T Consensus 125 -----~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~S 195 (339)
T PRK06959 125 -----DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRS 195 (339)
T ss_pred -----hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEec
Confidence 12 22345789999999999999996665554 567899999999998432111 1212234588889
Q ss_pred ccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 268 SHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 268 ~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
+||.||.+| +||+++++++++.+......| +.+.....++.++++.-.. .++.
T Consensus 196 fSK~~gl~GlRiGy~v~~~~li~~l~~~~~~~-----------------------~vs~~~q~a~~~~L~~~~~--~~~~ 250 (339)
T PRK06959 196 VGKFFGLAGVRAGFVLAAPALLAALRDALGAW-----------------------TVSGPARHAVRAAFADAAW--QAAM 250 (339)
T ss_pred ChhhcCCcchheEEEecCHHHHHHHHHhcCCC-----------------------CCcHHHHHHHHHHhCcHHH--HHHH
Confidence 999999777 999999998877776433211 1233344444455542111 4567
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
++++++.++++.+.|+++ ++++. +. +.+++++++ +..++.+.|.++ ||.++.. +..+
T Consensus 251 ~~~~~~~r~~l~~~L~~~-g~~~~-~~-------~~f~~~~~~--~~~~l~~~l~~~-GI~vr~~-----------~~~~ 307 (339)
T PRK06959 251 RERLAADGARLAALLRAH-GFAVH-AT-------PLFSWTDDP--RAAALHAALARR-GIWTRYF-----------APPP 307 (339)
T ss_pred HHHHHHHHHHHHHHHHHC-CCCcc-Cc-------ceEEEEeCC--CHHHHHHHHHhC-CeEEEEC-----------CCCC
Confidence 788888999999999887 66543 11 567788875 467899999988 9999732 2256
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
++||+++ .+.+|+++++++|+++++.+.
T Consensus 308 ~lRisi~--~~~~e~~~l~~al~~~~~~~~ 335 (339)
T PRK06959 308 SVRFGLP--ADEAEWQRLEDALAECVPTLA 335 (339)
T ss_pred eEEEECC--CCHHHHHHHHHHHHHHHHHHh
Confidence 8999985 377899999999999887664
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=224.79 Aligned_cols=349 Identities=14% Similarity=0.130 Sum_probs=217.0
Q ss_pred CCeEEecCCCCCCC---cHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeC
Q 012718 66 KKLVYLDNAATSQK---PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTK 136 (458)
Q Consensus 66 ~~~i~l~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~ 136 (458)
++.+.|..+..... .+.+.+++.+.+..... ......+.......++|+++++++ | ++++ +|++|+
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~-~I~it~ 104 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKL----TEALGNYDGPQGKDELIEALAALLNERYGWNISPQ-NIALTN 104 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCccc----ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChh-hEEEcc
Confidence 45677876655422 23445555554432100 000011122233457778888777 3 4454 999999
Q ss_pred ChhHHHHHHHHHcCCC-CCCCCCEEEE-cCCCCccchHHHHHHHHHcC----CeEEEEeCCCC---CCCCHHHHHHhhcC
Q 012718 137 NATEAINLVAYSWGLS-NLKSGDEVIL-TVAEHHSAIVPWQLVAQKTG----ANLKFLNLNDD---ESPDLDKLKEMLSR 207 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~-~~~~g~~vl~-~~~~~~s~~~~~~~~a~~~g----~~~~~v~~~~~---~~~d~~~l~~~l~~ 207 (458)
|+++++.+++.++... ...+||.|++ .+|+|+.. ...+...| ..+..++++.+ +.+|++.++ +..
T Consensus 105 Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~ 178 (416)
T PRK09440 105 GSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGY----ADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDE 178 (416)
T ss_pred ChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhh----HHHhhccCceeecccccccccccccccCCCHHHcc--cCC
Confidence 9999999999987210 0136899999 69999943 33332222 22223333332 467898887 456
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcccC---CCC--CCCCcEEEecccCCCCCCc--e
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVV---DVQ--GLDADFLVASSHKMCGPTG--I 277 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~---~~~--~~~~d~~~~s~~K~~gp~g--~ 277 (458)
+++++++++|+||||.+++ +++|+++|+++|++||+|++|+...... +.. ..+..++++|+||+ +.+| +
T Consensus 179 ~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRi 257 (416)
T PRK09440 179 DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRC 257 (416)
T ss_pred CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc-CCCcceE
Confidence 7899999999999999999 6788889999999999999997322111 111 12456888999996 7667 9
Q ss_pred eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH--HHHhCHHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY--LSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 278 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~--~~~~g~~~~~~~~~~l~~~ 355 (458)
||+++++++++.+......+ ..+++.....++..+++. +...-.+.+++.+++.++.
T Consensus 258 G~~i~~~~l~~~~~~~~~~~---------------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~ 316 (416)
T PRK09440 258 GIVIADEEIIEALSNMNGII---------------------SLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQL 316 (416)
T ss_pred EEEeCCHHHHHHHHHHHHHh---------------------ccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999988877665332210 112333333444444431 1110011244555555666
Q ss_pred HHHHHhcC-C--CEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhc-CCCCeEEE
Q 012718 356 LYENLLSI-P--NIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYL-GVNASARA 429 (458)
Q Consensus 356 l~~~L~~~-~--~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~-g~~~~lRi 429 (458)
+.+.|.+. + ++.+..+.. +.++|+.++. .+..++.+.+.++ ||.+.+|..+........ ...+++||
T Consensus 317 ~~~~L~~~l~~~~~~~~~p~g------g~fiw~~~~~~~~~~~~~~~~l~~~-gV~v~pg~~F~~~~~~~~~~~~~~iRi 389 (416)
T PRK09440 317 AIALLRRYLPDEPCLIHKPEG------AIFLWLWFKDLPITTEELYQRLKAR-GVLVVPGHYFFPGLDEDWPHAHQCIRM 389 (416)
T ss_pred HHHHHHHhcccCCeEEecCCC------ceEEEEECCCCCCCHHHHHHHHHHC-CEEEechHhhCCCCccccCCcCceEEE
Confidence 66666543 2 455444431 5688999874 5678888888777 999999875432100000 01358999
Q ss_pred eeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 430 SLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 430 s~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+++ .+.+++++++++|.+++++..+
T Consensus 390 s~~--~~~~~l~~~i~~l~~~~~~~~~ 414 (416)
T PRK09440 390 NYV--QDDEEIEKGIAILAEEVEKAYA 414 (416)
T ss_pred Eec--CCHHHHHHHHHHHHHHHHHHhh
Confidence 998 4789999999999999987654
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=220.67 Aligned_cols=340 Identities=16% Similarity=0.107 Sum_probs=231.6
Q ss_pred CCeEEecCCCC--CCCcH----HHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAAT--SQKPI----AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~~--~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
.+.+.|..+.. ...++ .+.+++.+.+... .. .+.......++|++++++++.+ ++++|+|++
T Consensus 36 ~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g-------~~--~Y~~~~g~~~Lreaia~~~~~~---~vv~t~ggt 103 (460)
T PRK13238 36 YNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRG-------DE--AYAGSRSYYRLEDAVKDIFGYP---YTIPTHQGR 103 (460)
T ss_pred CCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhC-------Cc--ccCCCCCHHHHHHHHHHHhCCC---cEEECCCHH
Confidence 45666666654 22222 3555665555421 00 1112334568999999999976 799999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC----------CCCCCHHHHHHhhcC--
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----------DESPDLDKLKEMLSR-- 207 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~----------~~~~d~~~l~~~l~~-- 207 (458)
+|+.+++.++ +++|| |+++++.|.+. ....+..|++++.+++++ .|.+|++.|++.+++
T Consensus 104 ~A~~~~~~al----l~pGD-Vii~~p~~~~~----~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~ 174 (460)
T PRK13238 104 AAEQILFPVL----IKKGD-VVPSNYHFDTT----RAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVG 174 (460)
T ss_pred HHHHHHHHHh----CCCCC-EEccCCcccch----HHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcC
Confidence 9999999888 89999 88888866643 333456799999999863 245999999999984
Q ss_pred --CceEEEEecccCcCc-cccc---HHHHHHHHHhcCcEEEEeccccCC-----------cccCCCCC------CCCcEE
Q 012718 208 --KTKLVVIHHISNMLA-SILP---IEEIVHWSHDVGAKVLVDACQSVP-----------HMVVDVQG------LDADFL 264 (458)
Q Consensus 208 --~~~~v~~~~~~n~tG-~~~~---l~~i~~l~~~~~~~vivD~a~~~g-----------~~~~~~~~------~~~d~~ 264 (458)
++++|++++++||+| .+++ +++|.++|++||+++|+|+++..+ ....++.. ...|++
T Consensus 175 ~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~ 254 (460)
T PRK13238 175 AENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGL 254 (460)
T ss_pred CCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEE
Confidence 689999999999998 7877 578999999999999999988542 11122111 137999
Q ss_pred EecccC-CCCCCceeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 265 VASSHK-MCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 265 ~~s~~K-~~gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
++|++| .++|.| |+++.++ ++++.++.....+. .....|..+...+.++..++.....
T Consensus 255 ~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~~----------------g~~t~~g~~~~~~~Ala~~l~e~~~--- 314 (460)
T PRK13238 255 TMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILYE----------------GFPTYGGLAGRDMEALAVGLYEGMD--- 314 (460)
T ss_pred EEecccCCCCcce-eEEEcChHHHHHHhhhcccccC----------------CcccccCcHHHHHHHHHhhHHHhhC---
Confidence 999999 567775 8888884 66666654321000 0112345555555666666654322
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC---------ChHHHHHHHhhhcCeEeccCCCC
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI---------HPTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
+...+...+.+++|.+.|.+. |+.+..|.. +.++.+++... ...+++.+|.++.||.+.++..+
T Consensus 315 ~~~~~~~~~~~~~l~~~L~~~-G~~~~~p~G------g~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f 387 (460)
T PRK13238 315 EDYLAYRIGQVEYLGEGLEEA-GVPIQTPAG------GHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSL 387 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHC-CCCeEccCC------ceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccce
Confidence 123333344579999999887 998887652 34566665421 34678888876669999876644
Q ss_pred ChhhHhhcC-----CCCeEEEeeCC-CCCHHHHHHHHHHHHHHHHh
Q 012718 414 AQPLHRYLG-----VNASARASLHF-YNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 414 ~~~~~~~~g-----~~~~lRis~~~-~~t~~di~~l~~~l~~~~~~ 453 (458)
..+.....| ..+.+|+++.- .-|.++++.+.++|.++.++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 388 LLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred ecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 333222222 25899999882 22889999999999998754
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-26 Score=217.79 Aligned_cols=301 Identities=20% Similarity=0.277 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+.+++++|++.|.+ ++++++|+++|+..++.++ +++||+|++++++|++....+..++...|.++..++.
T Consensus 52 pt~~~L~~~lA~l~g~~---~~i~~~sg~~Ai~~~l~~l----~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 124 (386)
T PRK08045 52 PTRDVVQRALAELEGGA---GAVLTNTGMSAIHLVTTVF----LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 124 (386)
T ss_pred ccHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHH----cCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCC
Confidence 34567889999999954 7999999999999999887 7899999999999998776667666666667777652
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
.|++++++.+++++++|++++++||||.+.|+++|.++|+++|+++++|++|..+.....+ +.++|+++.|++|
T Consensus 125 -----~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl-~~gaDivv~S~tK 198 (386)
T PRK08045 125 -----GDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPL-ALGADLVLHSCTK 198 (386)
T ss_pred -----CCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCch-hhCCCEEEeecce
Confidence 4889999999889999999999999999999999999999999999999999877653333 5678999999999
Q ss_pred CCC-CCc--eeEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 271 MCG-PTG--IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 271 ~~g-p~g--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
+++ +.+ .|+++.+ +++++.+...... + ..+.+......+..+|+. +....
T Consensus 199 ~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~--------------------~-g~~~~p~~~~l~~rgl~t-----l~~R~ 252 (386)
T PRK08045 199 YLNGHSDVVAGVVIAKDPDVVTELAWWANN--------------------I-GVTGGAFDSYLLLRGLRT-----LVPRM 252 (386)
T ss_pred eccCCCCceeEEEEeCcHHHHHHHHHHHHh--------------------c-CCCCCHHHHHHHHhhhcc-----HHHHH
Confidence 665 555 6877774 4444443311110 0 112333333333333332 45566
Q ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhh--cCeEeccCCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIR-IYGPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQ--YGVATRSGHHC 413 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~--~gi~~~~g~~~ 413 (458)
++..+++..+.+.|++.|.++ +..|.-.. ....+++++|.+.+ +..+..+.+..- +.+.++-|...
T Consensus 253 ~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~~~~~~~s~G~~~ 331 (386)
T PRK08045 253 ELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-DEQTLRRFLGGLSLFTLAESLGGVE 331 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC-cHHHHHHHHHhccceeEeccCCCCc
Confidence 777888899999999888765 33332111 12456799999975 333333333322 12233333311
Q ss_pred C------hh--------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 414 A------QP--------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 414 ~------~~--------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+ .. .....|. ++.+|+|++. ||++.+++.|.++++++.
T Consensus 332 sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~~ 384 (386)
T PRK08045 332 SLISHAATMTHAGMAPEARAAAGISETLLRISTGI----EDGEDLIADLENGFRAAN 384 (386)
T ss_pred eeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHHHhh
Confidence 1 10 1123444 5799999998 788888888888887654
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=219.30 Aligned_cols=300 Identities=21% Similarity=0.263 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+++++.+|+++|.+ ..++++||+.|+.+++.++ +++||.|+++.+.|.+....+...+...|++++.++.
T Consensus 59 p~~~~le~~lA~l~g~~---~av~~~sG~~Ai~~~l~al----~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~ 131 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTE---AAVATSSGMGAIAATLLTI----LKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINM 131 (391)
T ss_pred chHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECC
Confidence 34567889999999987 5688888899999999887 6899999999999988777777777888999999987
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
+ |++++++.+++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.....+ ..+.|+++.|++|
T Consensus 132 ~-----d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~-~~g~Divv~S~sK 205 (391)
T TIGR01328 132 A-----IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPV-ALGVDVVVHSATK 205 (391)
T ss_pred C-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCch-hcCCCEEEccccc
Confidence 5 789999999999999999999999999999999999999999999999999977653322 4579999999999
Q ss_pred CCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 271 MCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 271 ~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
.+|++| .|+++.++++++.+...... ....+..+....+ .++..++. +....+
T Consensus 206 ~lgg~g~~~gG~v~~~~~li~~l~~~~~~-------------------~~~g~~l~~~~a~---l~l~~L~t--l~~r~~ 261 (391)
T TIGR01328 206 YIGGHGDVVAGLICGKAELLQQIRMVGIK-------------------DMTGSVISPFDAW---LILRGLKT--LNIRMK 261 (391)
T ss_pred cccCCCCceEEEEEcCHHHHHHHHHHHHH-------------------hCCCCCCCcHHHH---HHHhCcCc--HHHHHH
Confidence 887655 58888887766655421100 0001122221222 22222222 344567
Q ss_pred HHHHHHHHHHHHHhcCCCEEE-eCCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCeE---eccCCCC
Q 012718 348 YEMELAKYLYENLLSIPNIRI-YGPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGVA---TRSGHHC 413 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~~~-~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~---~~~g~~~ 413 (458)
+..++++++.+.|++.|+++. ..|.-..+ ...+++++|.+.+ ...+..+.+..- .+. .+-|...
T Consensus 262 ~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~-~~~~~~~f~~~l-~~~~~~~s~G~~~ 339 (391)
T TIGR01328 262 RHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG-GFAGAKKLLNNL-KLIRLAVSLGDAE 339 (391)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC-CHHHHHHHHHhC-CcceEecCCCCCc
Confidence 778889999999998887653 33321111 2346799999974 333333333322 332 2323211
Q ss_pred C------hh--------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 414 A------QP--------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 414 ~------~~--------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+ .. .....|. ++.+|+|+++ ||++.|++.|+++++.
T Consensus 340 sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~ 390 (391)
T TIGR01328 340 TLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL----EDADDLIADLKQALDA 390 (391)
T ss_pred ccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHhh
Confidence 1 10 1113343 5689999998 8899999999988864
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=212.09 Aligned_cols=339 Identities=17% Similarity=0.151 Sum_probs=248.3
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcE-EEeCChhHHHHHHHHHcCCCCC-C
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEI-VFTKNATEAINLVAYSWGLSNL-K 155 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v-~~t~g~t~a~~~~~~~l~~~~~-~ 155 (458)
..|....+++.+... +..+++..+.+.+.++++.|.++++.+.++++ ++++|||.+++.++.++ + +
T Consensus 14 ~~~~~~~~~~~~~~~--------~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl----~~~ 81 (374)
T TIGR01365 14 KRPGWSIEELKNAPL--------GRSHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSM----LGC 81 (374)
T ss_pred CCchhhHHHHhhhhc--------ccCcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHc----CCC
Confidence 345545666655332 33455677899999999999999998644444 66899999999999998 5 4
Q ss_pred CCCEEEEcCCCCccchHHHH-HHHHHcCC-eEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQ-LVAQKTGA-NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW 233 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~-~~a~~~g~-~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l 233 (458)
+|+++++.. ..+. .|. .++++.|+ +++.+..+....+|+++++. . +.|+++|..+.||...|++++.+.
T Consensus 82 ~g~~vLv~g--~FG~--r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv~~i~~~ 152 (374)
T TIGR01365 82 RGVDVLAWE--SFGK--GWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPNGDFIPA 152 (374)
T ss_pred CCCeEEEEC--HHHH--HHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC--C---CCEEEecCCCchheeccccccccc
Confidence 788888754 4444 456 88899999 58888877777789998873 1 226799999999999999766532
Q ss_pred HHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccc--cCcceEeeecCCCCC
Q 012718 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLG--GGEMISDVFLDHSTF 310 (458)
Q Consensus 234 ~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~--g~~~~~~~~~~~~~~ 310 (458)
+ ++++++||++.++|..|+++++ .|++++|.+| +.+|+|+++++++++.+++...... .+....+.......+
T Consensus 153 ~--~~~lliVDavSs~g~~~l~~d~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~ 228 (374)
T TIGR01365 153 D--REGLTICDATSAAFAQDLDYHK--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLN 228 (374)
T ss_pred c--CCCcEEEEccchhcCCCCChhH--CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchh
Confidence 2 5899999999999999999885 9999999999 5559999999999998876552211 111000000000000
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeC
Q 012718 311 ADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVE 388 (458)
Q Consensus 311 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 388 (458)
..........||+...+.++..+++++.+. |++...++.+++++.+++.++++..+.++...+ ..+++ ++++.++
T Consensus 229 ~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~---~~rS~tvt~v~~~ 305 (374)
T TIGR01365 229 KKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETP---EIRSNTSVCLKVV 305 (374)
T ss_pred hhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCh---hhcCCCeEEEEeC
Confidence 000123456688888888888888888775 899999999999999999999983377665322 13355 6677774
Q ss_pred C--C-----C-----hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 389 N--I-----H-----PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 389 ~--~-----~-----~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
. + + ..++.+.|.++ ||.+.+|.... . ...+||+.....+.+|++.+++.|+-+.++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~i~~G~~~~-------~-~~~fRIg~~G~i~~~di~~l~~~l~~~~~~ 373 (374)
T TIGR01365 306 DPAIDALDEDAQADFAKELISTLEKE-GVAYDIGSYRD-------A-PSGLRIWCGATVEKSDLECLCPWLDWAFAL 373 (374)
T ss_pred CccccccccchhhHHHHHHHHHHHHC-CEEEecccccc-------C-CCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence 3 3 2 57888899988 99988775321 1 468999988889999999999999987754
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=215.11 Aligned_cols=299 Identities=13% Similarity=0.138 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
.....+++.+|++.|.+ ++++++|+++|+..++.++ +++||+|+++++.|++....+....+..|+++..++.
T Consensus 50 Pt~~~lE~~lA~l~g~~---~~~~~~sG~~Ai~~al~al----l~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~ 122 (377)
T TIGR01324 50 LTHFALQDAMCELEGGA---GCYLYPSGLAAVTNSILAF----VKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDP 122 (377)
T ss_pred ccHHHHHHHHHHHhCCC---cEEEECcHHHHHHHHHHHh----cCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence 34557889999999975 7889999999999999988 7899999999999987654333445677998888864
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. +.+.+++.+++++++|++++++||+|.+.|+++|+++|+++|+++++|++|+.|.. ....++++|+++.|++|
T Consensus 123 ~-----~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~-~~pl~~gaDivv~S~tK 196 (377)
T TIGR01324 123 L-----IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLL-FKPLEHGVDISIQAGTK 196 (377)
T ss_pred C-----CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc-cCccccCceEEEecCce
Confidence 3 33789999999999999999999999999999999999999999999999999877 33446789999999999
Q ss_pred CCCCC-c--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 271 MCGPT-G--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 271 ~~gp~-g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
++|+. + .|+++.+++.++.+..... ....+.+......+..+++.+ ....+
T Consensus 197 ~l~G~~d~~gG~v~~~~~~~~~l~~~~~---------------------~~G~~l~p~~a~~~~rgl~tl-----~~R~~ 250 (377)
T TIGR01324 197 YLVGHSDIMIGTVVANARTWDQLREHSY---------------------LMGQMVDADDAYTTLRGLRTL-----GVRLK 250 (377)
T ss_pred eccCCCCceEEEEEeCHHHHHHHHHHHH---------------------HhCCCCCHHHHHHHHhhhhhH-----HHHHH
Confidence 76644 3 6888888766554432111 001233433333333333333 23345
Q ss_pred HHHHHHHHHHHHHhcCCCE-EEeCCCCCC----------cCccccEEEEEeCCCC---hHHHHHHHhhhcCeEeccCCCC
Q 012718 348 YEMELAKYLYENLLSIPNI-RIYGPKPSE----------HVQRAALCSFNVENIH---PTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~-~~~~~~~~~----------~~~~~~~v~~~~~~~~---~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
+..+++..+.+.|++.|.+ +++.|.-.. ....+++++|.+.+.. ..++.+.|+-- ++.++-|...
T Consensus 251 ~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~-~~~~slG~~~ 329 (377)
T TIGR01324 251 QHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLF-GLGYSWGGYE 329 (377)
T ss_pred HHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcc-eEeccCCCcc
Confidence 5566677788888877665 344432110 0234679999997533 34455555533 5555444421
Q ss_pred C-----h--hhH---hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 414 A-----Q--PLH---RYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 414 ~-----~--~~~---~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+ . ..+ ...|. ++.+|+|++. ||.+.+++.|.++++.
T Consensus 330 sl~~~~~~~~~~~~~~~~~~~~~liR~svGl----E~~~dl~~dl~~al~~ 376 (377)
T TIGR01324 330 SLALCNQPELGHRPNIKRNLEGPLIRVHIGL----ENVDDLKADLKAGFEA 376 (377)
T ss_pred ceeecCCCCCCHHHHHhccCCCCEEEEEeCC----CCHHHHHHHHHHHHhc
Confidence 1 1 001 11122 4689999998 7888888888888764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=216.89 Aligned_cols=296 Identities=21% Similarity=0.285 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+++++.+++++|++ .+++++||+.|+..++.++ +++||+|+++.+.|.++...+...+++.|++++.++.
T Consensus 54 p~~~~le~~la~l~g~~---~~~~~~sG~~Ai~~al~al----~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 54 PTVAAFEERIAALEGAE---RAVATATGMSAIQAALMTL----LQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred chHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECC
Confidence 44667889999999985 6788999999999999887 6899999999999988776777777888999999987
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
+ |++++++.+++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.....+ +.++|+++.|++|
T Consensus 127 ~-----d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl-~~g~Divv~S~sK 200 (380)
T TIGR01325 127 T-----DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPL-KLGADVVVYSATK 200 (380)
T ss_pred C-----CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCEEEeeccc
Confidence 5 789999999889999999999999999999999999999999999999999865432222 5579999999999
Q ss_pred CCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 271 MCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 271 ~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
++++.| .|+++.+++.++.+....... .++.+....+. ++.-+.. +....+
T Consensus 201 ~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~---------------------g~~~~p~~a~~---~l~~l~t--l~~r~~ 254 (380)
T TIGR01325 201 HIDGQGRVMGGVIAGSEELMAEVAVYLRHT---------------------GPAMSPFNAWV---LLKGLET--LSLRMQ 254 (380)
T ss_pred eecCCCCeEEEEEEeCHHHHHHHHHHHHhh---------------------CCCCCHHHHHH---HHhccCc--HHHHHH
Confidence 887665 488888887666554322110 11222222222 2222222 344556
Q ss_pred HHHHHHHHHHHHHhcCCCEEEe-CCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhh--cCeEeccCCCCC
Q 012718 348 YEMELAKYLYENLLSIPNIRIY-GPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQ--YGVATRSGHHCA 414 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~~~~-~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~--~gi~~~~g~~~~ 414 (458)
+..+++.++.+.|+++|+++.+ .|.-.. ....+++++|.+. +.....+.+..- ..+.++-|...+
T Consensus 255 ~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~--~~~~~~~f~~~l~~~~~~~s~G~~~s 332 (380)
T TIGR01325 255 KQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA--DRAAAWKVLDAVELVSITNNLGDAKS 332 (380)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CHHHHHHHHHcCCcceEcccCCCCCe
Confidence 6677888889999888776532 221100 0235679999997 333333333322 122223232111
Q ss_pred ------h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 415 ------Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 415 ------~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
. ......|. ++.+|+|++. ||.+.+++.|++++
T Consensus 333 l~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al 380 (380)
T TIGR01325 333 TITHPATTTHGRMQPEERAAAGIGDGLVRLSVGL----EDVDDLIADLKRAL 380 (380)
T ss_pred eeeCCCccCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHhhC
Confidence 0 01113343 5799999998 77888888777653
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=220.35 Aligned_cols=362 Identities=16% Similarity=0.127 Sum_probs=222.3
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHH-HHHHHHcCC--CCCC--cEEEeCChhH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELAR-KKVAAFINA--SDSG--EIVFTKNATE 140 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~~g~--~~~~--~v~~t~g~t~ 140 (458)
++.+.+..+..+..|+..++++.+.+... .++.. .+.....+.+. +.+.+.++. .+.+ +|++|+|+++
T Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~Y~~p------~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~ 166 (521)
T TIGR03801 94 RDIISYVIDQLGFDPDAFLYEMCDGIIGD-NYPVP------DRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTA 166 (521)
T ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHhhcC-CCCCC------CCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHH
Confidence 45677777777755666666666664321 11100 01122222222 233333222 2333 7999999999
Q ss_pred HHHHHHHHcCC-CCCCCCCEEEEcCCCCccchHHHHHHHHHc--CCeEEEEeCCCC-------CCCCHHHHHHhhcCCce
Q 012718 141 AINLVAYSWGL-SNLKSGDEVILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDD-------ESPDLDKLKEMLSRKTK 210 (458)
Q Consensus 141 a~~~~~~~l~~-~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~--g~~~~~v~~~~~-------~~~d~~~l~~~l~~~~~ 210 (458)
|+..++.++.. ..+++||+|+++.|.|+ .+...++.. |++++.++.++. +.+|.++++++++++++
T Consensus 167 al~~~~~~l~~~~ll~pGD~Vlv~~P~y~----~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~k 242 (521)
T TIGR03801 167 AMCYIFDSLKANELLKKGDKIALMTPIFT----PYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIK 242 (521)
T ss_pred HHHHHHHHHhHhhcCCCCCEEEEeCCCcH----HHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCc
Confidence 99999877210 01689999999999999 445554443 678888877532 56899999998888999
Q ss_pred EEEEecccCcCccccc---HHHHHHHHHhc--CcEEEEeccccCCccc-CCCCC--CCCcEEEecccCCCCCCc--eeEE
Q 012718 211 LVVIHHISNMLASILP---IEEIVHWSHDV--GAKVLVDACQSVPHMV-VDVQG--LDADFLVASSHKMCGPTG--IGFL 280 (458)
Q Consensus 211 ~v~~~~~~n~tG~~~~---l~~i~~l~~~~--~~~vivD~a~~~g~~~-~~~~~--~~~d~~~~s~~K~~gp~g--~G~l 280 (458)
++++++|+||||.+++ +++|+++|+++ +++||+|++|+.-... .++.. .+..+++.|+||.||.+| +||+
T Consensus 243 ai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i 322 (521)
T TIGR03801 243 ALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATGWRLGTI 322 (521)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCchhhhhhh
Confidence 9999999999999999 67788889886 9999999999832111 11111 135688999999999888 9999
Q ss_pred EEecc-----ccccCCC--------ccccCcceEe--eecCC--CCCCCCCCccCCCCCCHHHH--H--HHHHHHHHHHH
Q 012718 281 FGKSD-----LLSAMPP--------FLGGGEMISD--VFLDH--STFADPPSRFEAGTPAIGEA--I--GLGAAIDYLST 339 (458)
Q Consensus 281 ~~~~~-----~~~~l~~--------~~~g~~~~~~--~~~~~--~~~~~~~~~~~~gt~~~~~~--~--~l~~al~~~~~ 339 (458)
+.+++ +++.+.+ .+..-..... .+.+. .+..........|.+.+.+. + ++.+.++.-..
T Consensus 323 ~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~~~~ 402 (521)
T TIGR03801 323 ALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDKENA 402 (521)
T ss_pred hcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccchh
Confidence 99875 3322210 0000000000 00000 00000001111233333232 2 22233332222
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-----------------ChHHHHHHHhhh
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-----------------HPTDIATLLDQQ 402 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------~~~~~~~~l~~~ 402 (458)
-.++.++.++++++.+.+.| |+.+...++ ..+.+++++++.+ +..+++.+|.++
T Consensus 403 -y~~~~~~~~~~R~~~l~~~L----g~~~~~~~~----~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e 473 (521)
T TIGR03801 403 -YKAETKDICRRREKLLFRGL----GLPLQEDPN----DVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEE 473 (521)
T ss_pred -HHHHHHHHHHHHHHHHHHhc----CCCCcCCCC----CeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHh
Confidence 24566777788888888887 333222221 1144777787631 456788888877
Q ss_pred cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 403 YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 403 ~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.||.+.||..+.. ..+++|||+.. .+++++.++.++|.+++++..
T Consensus 474 ~gV~v~PG~~Fg~-------~~~~vRisla~-l~~~~~~~~~~rl~~~~~~~~ 518 (521)
T TIGR03801 474 TGIVLLPGGGFGG-------PEWSVRVSLAN-LNEYDYAEIGRAIRKILDEYY 518 (521)
T ss_pred CCEEEeCchhcCC-------CCCeEEEEecC-CCHHHHHHHHHHHHHHHHHHH
Confidence 7999999984422 14679999974 478899999999999987654
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=217.94 Aligned_cols=302 Identities=20% Similarity=0.233 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+.+++.++++.|++ ..++++||+.|+.+++.++ +++||+|+++.+.|......+...++..|++++.++.
T Consensus 65 p~~~~le~~lA~l~g~~---~~i~~~sG~~Al~~~l~~l----l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 137 (403)
T PRK07503 65 PTLALLEQRMASLEGGE---AAVALASGMGAITATLWTL----LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDL 137 (403)
T ss_pred chHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHH----cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCC
Confidence 44667889999999986 4567778899999999877 7899999999999976655555666778999999987
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
+ |++.+++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.....+ ..++|+++.|++|
T Consensus 138 ~-----d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l-~~g~Di~v~S~tK 211 (403)
T PRK07503 138 T-----DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL-ELGADLVVHSATK 211 (403)
T ss_pred C-----CHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCEEEccccc
Confidence 5 789999999989999999999999999999999999999999999999999876543223 4678999999999
Q ss_pred CCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 271 MCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 271 ~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
++|+.| +|+++.+++++++++.... .......++....+.+ +..++. ++...+
T Consensus 212 ~l~g~gd~~gG~v~~~~~l~~~l~~~~~-------------------~~~~g~~~s~~~a~l~---l~~L~t--l~~r~~ 267 (403)
T PRK07503 212 YLGGHGDITAGLVVGGKALADRIRLEGL-------------------KDMTGAVMSPFDAFLL---MRGLKT--LALRMD 267 (403)
T ss_pred cccCCCceeEEEEEcCHHHHHHHHhhhH-------------------HhCcCCCCCHHHHHHH---HcCcch--HHHHHH
Confidence 888755 7888877776665542110 0000122333222222 233332 333445
Q ss_pred HHHHHHHHHHHHHhcCCCEEEe-CCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhhcCeE---eccCCC-
Q 012718 348 YEMELAKYLYENLLSIPNIRIY-GPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQYGVA---TRSGHH- 412 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~~~~-~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~---~~~g~~- 412 (458)
+..+++..+.+.|+++|.++.. .|.-.. ...++++++|.+.+ ......+.+..- .++ .+-|..
T Consensus 268 ~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~-~~~~~~~~~~~l-~l~~~~~slG~~~ 345 (403)
T PRK07503 268 RHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKG-GIAAGRRFMNAL-QLFARAVSLGDAE 345 (403)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECC-CHHHHHHHHHhC-CcceeecccCCCC
Confidence 5568888899999888776533 221110 01357799999874 233333333322 332 111211
Q ss_pred ---CC--h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 413 ---CA--Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 413 ---~~--~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+. . ......|. ++.||+|++. ||++.+++.|.++++.+.
T Consensus 346 sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~Al~~~~ 398 (403)
T PRK07503 346 SLAQHPASMTHSTYTPEERAEHGISEGLVRLSVGL----EDVADILADLAQALDACA 398 (403)
T ss_pred ccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEec----CCHHHHHHHHHHHHHHHH
Confidence 00 0 01123444 5689999998 788888888888887654
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=215.49 Aligned_cols=301 Identities=21% Similarity=0.230 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 109 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
.....+++++.+|++.|.+. .+++ +||++|+..++.++ +++||+|+++.+.|......+...++..|++++.+
T Consensus 43 ~~p~~~~L~~~lA~l~g~~~--~v~~-~sG~~ai~~~l~al----~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~ 115 (376)
T PRK06460 43 ANPTVLELTKKIVELENAEM--GVAF-SSGMGAISTTALAL----LKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDAS 115 (376)
T ss_pred CCccHHHHHHHHHHHhCCCc--EEEe-CCHHHHHHHHHHHH----hCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEE
Confidence 34566789999999999863 5555 56678999998887 78999999999988877767777888889999988
Q ss_pred eCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
+.+ +.+.+++.+++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.....+ ..+.|+++.|+
T Consensus 116 ~~~-----~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l-~~~~divv~S~ 189 (376)
T PRK06460 116 NPG-----SDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPL-ELGADIVVHSA 189 (376)
T ss_pred CCC-----CHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCChh-hcCCCEEEeec
Confidence 765 334566666778999999999999999999999999999999999999999865321112 34689999999
Q ss_pred cCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 269 HKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 269 ~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
||++++.+ +|+++.++++++.+......++ .+.+......+...+++ ++..
T Consensus 190 sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g---------------------~~~~~~~a~~~l~~~~~-----l~~r 243 (376)
T PRK06460 190 SKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLG---------------------TSLDPHAAYLTLRGIKT-----LKIR 243 (376)
T ss_pred ceeccCCCCceEEEEecCHHHHHHHHHHHHhcC---------------------CCCCHHHHHHHHhchhh-----HHHH
Confidence 99776543 8999988887666653322111 11222111111122333 3455
Q ss_pred HHHHHHHHHHHHHHHhcCCCEE-EeCCCCC----------CcCccccEEEEEeCCCChHHHHHHHhhhcCe---EeccCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIR-IYGPKPS----------EHVQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSGH 411 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g~ 411 (458)
.+++.++++++.+.|++.|.++ +..|.-. .....+++++|.+.+ +..+..+.+..- .+ .++-|.
T Consensus 244 ~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~-~~~~~~~~~~~l-~~~~~~~s~Gg 321 (376)
T PRK06460 244 MDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG-GQESALKVMKSL-KLIIPAQTLGG 321 (376)
T ss_pred HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC-cHHHHHHHHHhC-CcceeccCCCC
Confidence 6778889999999998887664 3333110 012457799999974 223333333322 22 222222
Q ss_pred ------CCCh--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 412 ------HCAQ--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 412 ------~~~~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
++.. ......|. ++.||+|++. ||.+.+++.|+++++.+
T Consensus 322 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~ 375 (376)
T PRK06460 322 VNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI----EDVNDLIEDLDRALSTL 375 (376)
T ss_pred CceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence 1110 11112343 5789999997 78888888888887653
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=208.86 Aligned_cols=331 Identities=20% Similarity=0.245 Sum_probs=245.0
Q ss_pred CCeEEecCC-CCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNA-ATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
..++.|..+ ..| .-.+.+.++..+.++++.... +....-.+......++++.||+++|.+. .++| ++|-.|+.
T Consensus 39 ~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~--~gsR~i~G~~~~h~~LE~~lA~f~g~e~--al~f-~SGy~AN~ 113 (388)
T COG0156 39 RKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGA--GGSRLISGTSDLHVELEEELADFLGAEA--ALLF-SSGFVANL 113 (388)
T ss_pred ceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCC--CCcCcccCCcHHHHHHHHHHHHHhCCCc--EEEE-cccchhHH
Confidence 445555443 233 234458888888888763332 2222223467788899999999999983 4444 55556888
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHI 217 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~ 217 (458)
.++.++ .+++|.|+.....|-|.+.+. +..+++++..... |++.|++.+.+ +.++|+++.+
T Consensus 114 ~~i~~l----~~~~dli~~D~lnHASiidG~----rls~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegV 180 (388)
T COG0156 114 GLLSAL----LKKGDLIFSDELNHASIIDGI----RLSRAEVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGV 180 (388)
T ss_pred HHHHHh----cCCCcEEEEechhhhhHHHHH----HhCCCcEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEecc
Confidence 888888 678999999999999865544 4458899888875 89999999976 3589999999
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC---------CCCCCCcEEEecccCCCCCCceeEEEEeccccc
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD---------VQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~---------~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~ 288 (458)
.++.|.+.|+++|++++++|+++++||++|++|...-+ +.....|++++|++|.||.. .|++.++..+++
T Consensus 181 fSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~-Gg~v~g~~~~~d 259 (388)
T COG0156 181 FSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSS-GGYIAGSAALID 259 (388)
T ss_pred ccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhccc-CceeeCcHHHHH
Confidence 99999999999999999999999999999998876321 22234689999999999855 488888887766
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+.....++ -| +.+.++....+...+++.+.+ ....++++.++..++.+.+... ++.+
T Consensus 260 ~L~~~ar~~------------------if-StalpP~~aaa~~~al~~l~~--~~~~r~~L~~~~~~~~~~~~~~-~~~~ 317 (388)
T COG0156 260 YLRNRARPF------------------IF-STALPPAVAAAALAALRILEE--GPERRERLQELAAFFRSLLKAL-GLVL 317 (388)
T ss_pred HHHHhCCce------------------ec-cCCCCHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHhc-CCcc
Confidence 554221110 11 234555566677788888886 4778888899999999777665 6655
Q ss_pred eCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
.... .+++.+.+.+ ....++...|.++ ||++.+..++..|. ....+|++++..+|++||+++++.+
T Consensus 318 ~~s~-------s~I~pv~~gd~~~a~~~s~~l~~~-Gi~v~~i~~PTVp~-----gtarlRi~lta~ht~~~I~~l~~~l 384 (388)
T COG0156 318 LPSE-------SPIIPVILGDEERALEASRALLEE-GIYVSAIRPPTVPK-----GTARLRITLTAAHTEEDIDRLAEAL 384 (388)
T ss_pred CCCC-------CCeeeeEeCCHHHHHHHHHHHHHC-CeeEeeecCCCCCC-----CcceEEEEecCCCCHHHHHHHHHHH
Confidence 3333 7788887764 3356788888888 99998777665552 2568999999999999999999999
Q ss_pred HHH
Q 012718 448 NET 450 (458)
Q Consensus 448 ~~~ 450 (458)
.++
T Consensus 385 ~~~ 387 (388)
T COG0156 385 SEV 387 (388)
T ss_pred Hhh
Confidence 875
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=218.62 Aligned_cols=302 Identities=21% Similarity=0.256 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
....++++.+|++.|.+ ++++++||+.|+..++.++ +++||+|+++.+.|++....+...++..|++++.++.
T Consensus 64 p~~~~Le~~iA~~~g~~---~~l~~~sG~~Ai~~al~~l----l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~ 136 (400)
T PRK06234 64 PTSTEVENKLALLEGGE---AAVVAASGMGAISSSLWSA----LKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDT 136 (400)
T ss_pred ccHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHH----hCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECC
Confidence 44568899999999975 6788999999999988877 7899999999999998776666667888999999986
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc--CcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~--~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
. |++++++++++++++|++++|+||||.+.|+++|.++|+++ |+++++|++|+.+.....+ ..+.|+++.|+
T Consensus 137 ~-----d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l-~~g~Divv~S~ 210 (400)
T PRK06234 137 S-----NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPL-QLGADVVVHSA 210 (400)
T ss_pred C-----CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCch-hhCCcEEEeec
Confidence 5 88999999999999999999999999999999999999997 9999999999977643222 45799999999
Q ss_pred cCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 269 HKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 269 ~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
+|+++++| .|++++++++++.+..... . .....+.+......+... ++. ++..
T Consensus 211 sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~--~-----------------~~~g~~l~p~~a~l~~~~---l~t--l~~r 266 (400)
T PRK06234 211 TKYLNGHGDVIAGFVVGKEEFINQVKLFGI--K-----------------DMTGSVIGPFEAFLIIRG---MKT--LQIR 266 (400)
T ss_pred cccccCCCCceeEEEEecHHHHHHHHHHHH--H-----------------HhcCCCCCHHHHHHHHhc---cCc--HHHH
Confidence 99887666 5999998877665532100 0 000112332222222222 222 3455
Q ss_pred HHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCC--ChHHHHHHHhhhcCeEeccCCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENI--HPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~--~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
.++..+++.++.+.|++.|.+. ++.|.-..+ ...+++++|.+.+. ....+.+.|.-- ++..+-|..
T Consensus 267 ~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~-~~~~s~G~~ 345 (400)
T PRK06234 267 MEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLA-TLAVSLGDA 345 (400)
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcc-eEeccCCCC
Confidence 5666788889999998887664 333321100 23467999999742 123455555433 544444432
Q ss_pred CCh--------------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 413 CAQ--------------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 413 ~~~--------------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+- ......|. ++.+|+|++. ||.+.+++.|.++++.+
T Consensus 346 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~~~ 398 (400)
T PRK06234 346 ETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGL----EDVDDIIADLKQALDLI 398 (400)
T ss_pred CceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence 211 01123343 5789999998 78888888888877653
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-25 Score=214.04 Aligned_cols=296 Identities=20% Similarity=0.246 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC
Q 012718 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND 192 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~ 192 (458)
.+++++.+|++.|.+ +.++++||+.|+..++.++ +++||+|+++...|......+...++..|++++.++..
T Consensus 72 ~~~le~~lA~l~g~~---~al~~~sG~~Ai~~~l~al----l~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~- 143 (403)
T PRK07810 72 VSMFEERLRLIEGAE---ACFATASGMSAVFTALGAL----LGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE- 143 (403)
T ss_pred HHHHHHHHHHHhCCC---cEEEECChHHHHHHHHHHH----hCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC-
Confidence 567889999999976 7788899999999998887 68999999999888877777777788889999999754
Q ss_pred CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCC
Q 012718 193 DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC 272 (458)
Q Consensus 193 ~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~ 272 (458)
|++++++++++++++|++++++||+|.+.|+++|+++|+++|+++++|++|+.+..... .+.++|+++.|++|++
T Consensus 144 ----d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~-~~~gaDivv~S~tK~l 218 (403)
T PRK07810 144 ----DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRG-LPLGADVVVYSGTKHI 218 (403)
T ss_pred ----CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCCh-hhcCCcEEEccCCcee
Confidence 89999999999999999999999999999999999999999999999999997765322 2567999999999988
Q ss_pred CCCc---eeEEEEeccccc-cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Q 012718 273 GPTG---IGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY 348 (458)
Q Consensus 273 gp~g---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~ 348 (458)
++.| .|+++.+++.+. .+..+.... ...++....+.+ +..++. ++...++
T Consensus 219 ~g~g~~~gG~v~~~~~~~~~~l~~~~~~~---------------------g~~~s~~~a~l~---l~~L~t--l~~R~~~ 272 (403)
T PRK07810 219 DGQGRVLGGAILGDREYIDGPVQKLMRHT---------------------GPALSAFNAWVL---LKGLET--LALRVRH 272 (403)
T ss_pred cCCcCceeEEEEeChHHHHHHHHHHHHHh---------------------CCCCCHHHHHHH---HhccCc--HHHHHHH
Confidence 7766 588888876543 232211100 112333333333 233333 4556677
Q ss_pred HHHHHHHHHHHHhcCCCEEE-eCCCCCCc----------CccccEEEEEeCCC---ChHHHHHHHhhh--cCeEeccCCC
Q 012718 349 EMELAKYLYENLLSIPNIRI-YGPKPSEH----------VQRAALCSFNVENI---HPTDIATLLDQQ--YGVATRSGHH 412 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~-~~~~~~~~----------~~~~~~v~~~~~~~---~~~~~~~~l~~~--~gi~~~~g~~ 412 (458)
..+++.++.+.|++.|.++. ..|.-..+ ...+++++|.+.+. ..++..+.+..- ..+.++-|..
T Consensus 273 ~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~ 352 (403)
T PRK07810 273 SNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDA 352 (403)
T ss_pred HHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEeccCCCC
Confidence 77888888899998887663 32311110 13467999999752 223333333321 1222222221
Q ss_pred CC--------------hhhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 413 CA--------------QPLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 413 ~~--------------~~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.+ .......|. ++.+|+|+++ ||++.+++.|++++
T Consensus 353 ~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGl----E~~~dli~dl~~Al 402 (403)
T PRK07810 353 KSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGL----EDTDDLIADLDRAL 402 (403)
T ss_pred cceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 11 111223444 5689999998 78888888887765
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-24 Score=205.80 Aligned_cols=297 Identities=13% Similarity=0.017 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC-CcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEE
Q 012718 108 KATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186 (458)
Q Consensus 108 ~~~~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~ 186 (458)
...+...++.+.+++++|.+++ ...++|+|||+++..++.+.+. ..+...+++++..|+|. .+.++..|++++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe--~~~~~vvy~S~~aH~Sv----~KAa~llgi~~~ 203 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYSV----FKAARMYRMECV 203 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHh--hcCCcEEEEcCCccHHH----HHHHHhcCCcce
Confidence 4677888899999999999763 2578999999999999988753 23344788999999954 777888899999
Q ss_pred EEeCCCCCCCCHHHHHHhhcCC---ceEEEEecccCcCcccccHHHHHHHHHhcCc-----EEEEeccccCCccc-----
Q 012718 187 FLNLNDDESPDLDKLKEMLSRK---TKLVVIHHISNMLASILPIEEIVHWSHDVGA-----KVLVDACQSVPHMV----- 253 (458)
Q Consensus 187 ~v~~~~~~~~d~~~l~~~l~~~---~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~-----~vivD~a~~~g~~~----- 253 (458)
.||+++++.+|+++|+++|.++ +.+|+.+.+++++|.+.|+++|.++|+++|+ |++||++++...+|
T Consensus 204 ~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~ 283 (470)
T PLN02263 204 KVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRA 283 (470)
T ss_pred EeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccc
Confidence 9999999999999999998754 5678889999999999999999999999997 99999999865543
Q ss_pred --CCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHH
Q 012718 254 --VDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGL 330 (458)
Q Consensus 254 --~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 330 (458)
+++.. .+|.++.++||+ +.|.++|++++|++.++.+... ..|......--.|+.+....+.+
T Consensus 284 ~~~df~~-~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~--------------~~Yl~~~d~ti~gSR~g~~al~l 348 (470)
T PLN02263 284 PKVTFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN--------------VEYLASRDATIMGSRNGHAPIFL 348 (470)
T ss_pred cccCCCc-CccEEEECCccccCCCcCEEEEEEehhhHhhhccC--------------hHhhCCCCCCcCCCCCcHHHHHH
Confidence 23322 389999999995 5599999999997654333210 01100011112456666567888
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccC
Q 012718 331 GAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSG 410 (458)
Q Consensus 331 ~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g 410 (458)
+.+++.+...|+.+..+++.++++++.+.|++. ++.....+. ..+++|+.+. .+. ..+ |..+..-
T Consensus 349 W~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~------s~~V~f~~p~---~~~----~~~-gW~L~~~ 413 (470)
T PLN02263 349 WYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNEL------SSTVVFERPK---DEE----FVR-RWQLACQ 413 (470)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCC------ceEEEEecCc---hHH----hhc-ceEEccC
Confidence 899999988899999999999999999999998 666554432 6788887552 111 224 6655421
Q ss_pred CCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 411 HHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 411 ~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+..+++.+.+..+.+.+|+|++.|++..+.
T Consensus 414 -------------~~~~Hivvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 414 -------------GNIAHVVVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred -------------CCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 356999998878999999999999988763
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=213.43 Aligned_cols=300 Identities=13% Similarity=0.113 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
+..+.+.+.+|++-|.. ..++++||+.|++.++.++ +++||+|+++...|.+....+....++.|++++.++.
T Consensus 62 Pt~~~le~~la~LEg~~---~a~~~~SGmaAi~~~~~~l----l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~ 134 (395)
T PRK08114 62 LTHFSLQEAMCELEGGA---GCALYPCGAAAVANAILAF----VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP 134 (395)
T ss_pred hhHHHHHHHHHHHhCCC---eEEEEhHHHHHHHHHHHHH----cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence 44456779999998876 6778888999999999887 7899999999999998877777777888999999885
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc--CcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~--~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
. |.+.+++++++++++|++++++||+|.+.|+++|+++||++ |++++||++++.|.. ++..++|+|+++.|.
T Consensus 135 ~-----d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~GaDivv~S~ 208 (395)
T PRK08114 135 L-----IGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGIDISIQAG 208 (395)
T ss_pred C-----CHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCCcEEEEcC
Confidence 3 78899999999999999999999999999999999999998 499999999999988 888899999999999
Q ss_pred cCCCCCC---ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 269 HKMCGPT---GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 269 ~K~~gp~---g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
+|+++++ ++|+++.+++.++.+...... .....+......+...|+. +...
T Consensus 209 tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~---------------------~G~~~~p~~a~l~~rgl~T-----L~lR 262 (395)
T PRK08114 209 TKYLVGHSDAMIGTAVANARCWEQLRENSYL---------------------MGQMVDADTAYMTSRGLRT-----LGVR 262 (395)
T ss_pred cccccCCCcceeEEEEcCHHHHHHHHHHHHh---------------------ccCCCCHHHHHHHHcCCCc-----HHHH
Confidence 9955544 378777776554433311110 0112222222222122222 3445
Q ss_pred HHHHHHHHHHHHHHHhcCCCEE-EeCCCCCC----------cCccccEEEEEeCCC-ChHHHHHHHhhhcCe---EeccC
Q 012718 346 HAYEMELAKYLYENLLSIPNIR-IYGPKPSE----------HVQRAALCSFNVENI-HPTDIATLLDQQYGV---ATRSG 410 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~----------~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi---~~~~g 410 (458)
.++..+++..+.+.|+++|.++ ++.|.-.. ....+++++|.+.+. +.+++.+.+..- .+ .++-|
T Consensus 263 ~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l-~l~~~a~SlG 341 (395)
T PRK08114 263 LRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNF-SLFSMAYSWG 341 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhC-CcceeecccC
Confidence 5667788899999999888765 44442110 124567999999752 344444444432 33 33333
Q ss_pred CCCC------hhhHhh------cCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 411 HHCA------QPLHRY------LGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 411 ~~~~------~~~~~~------~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
...+ +..... .+. .+.||+|++. ||++.+++.|+++++.+
T Consensus 342 g~~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~DLi~Dl~~Al~~~ 394 (395)
T PRK08114 342 GFESLILANQPEEIAAIRPAGEVDFTGTLIRLHIGL----EDVDDLIADLAAGFARI 394 (395)
T ss_pred CccceeccCCchhhhccCChhHhcCCCCeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence 3211 111111 111 4789999997 78888888888888753
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-24 Score=208.93 Aligned_cols=342 Identities=16% Similarity=0.173 Sum_probs=229.3
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
..+...+++.+.+.. +.... .....++++.+++++|.+ ++++++|+|+|+.+++.++ .+++||
T Consensus 12 ~~~~e~~~~~~~l~~-------~~~~~----g~~~~~le~~la~~~g~~---~~v~~~sgt~al~lal~al---~~~~Gd 74 (379)
T PRK11658 12 MGDEELAAVKEVLRS-------GWITT----GPKNQALEQAFCQLTGNQ---HAIAVSSATAGMHITLMAL---GIGPGD 74 (379)
T ss_pred CCHHHHHHHHHHHHc-------CCccC----CHhHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHc---CCCCCC
Confidence 445567777776653 11111 234668899999999986 6788999999999999988 368999
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV 237 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~ 237 (458)
+|+++.++|.+.. ..+...|++++.++++++ +.+|++++++.+++++++|+.. +++|...|+++|.++|+++
T Consensus 75 ~Viv~~~~~~~~~----~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~~~---~~~G~~~d~~~i~~~a~~~ 147 (379)
T PRK11658 75 EVITPSLTWVSTL----NMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRTKAIIPV---HYAGAPADLDAIRAIGERY 147 (379)
T ss_pred EEEECCCcHHHHH----HHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCCeEEEEe---CCCCCcCCHHHHHHHHHHc
Confidence 9999999999764 344567999999999865 5689999999999999988744 4599999999999999999
Q ss_pred CcEEEEeccccCCcccC--CCCCCCCcEEEecccCCCCCCceeEEEEe-ccccccCCCccccCcceEeeecCCCCCC--C
Q 012718 238 GAKVLVDACQSVPHMVV--DVQGLDADFLVASSHKMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFA--D 312 (458)
Q Consensus 238 ~~~vivD~a~~~g~~~~--~~~~~~~d~~~~s~~K~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~--~ 312 (458)
|+++|+|++|++|.... .+...+.++++++.+|.+.....|+++.+ +++.++++.+...+.... .+. ...+. .
T Consensus 148 gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~ 225 (379)
T PRK11658 148 GIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVD-AFD-RQTQGRAP 225 (379)
T ss_pred CCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcc-hhh-hhcccCCC
Confidence 99999999999887643 25556667777777784432225666664 566666654332221111 000 00000 0
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEEEEEeC---
Q 012718 313 PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALCSFNVE--- 388 (458)
Q Consensus 313 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--- 388 (458)
....+..|+.. .+..+.+++...+-.+++++.++.+++++++.+.|++++...+..+... ..+. .++.+.++
T Consensus 226 ~~~~~~~G~n~--~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 301 (379)
T PRK11658 226 QAEVLTPGYKY--NLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWP--HQHAWHLFIIRVDEER 301 (379)
T ss_pred cceeecccccc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCC--CceeEEEEEEEECCcc
Confidence 00122233321 1234555555555556899999999999999999998854333322211 1222 24556654
Q ss_pred -CCChHHHHHHHhhhcCeEeccCCC--CChhhHhhc-C---C-------CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 389 -NIHPTDIATLLDQQYGVATRSGHH--CAQPLHRYL-G---V-------NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 389 -~~~~~~~~~~l~~~~gi~~~~g~~--~~~~~~~~~-g---~-------~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+.+.+++.+.|.++ ||.++.... +..+.+... . . ...+.+.++...+++|++++++.|++++
T Consensus 302 ~~~~r~~~~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 302 CGISRDALMEALKER-GIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred ccCCHHHHHHHHHHC-CCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 34688999999988 997653210 000111100 0 0 4567777777789999999999999875
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=218.77 Aligned_cols=324 Identities=15% Similarity=0.136 Sum_probs=213.9
Q ss_pred CCeEEecCCCC----CCCc--HHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-----CCCcE--
Q 012718 66 KKLVYLDNAAT----SQKP--IAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEI-- 132 (458)
Q Consensus 66 ~~~i~l~~~~~----~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~~v-- 132 (458)
++.+.|..|.. ...| +.+.+++.+..... . ..++....+..++|+++++++... ..++|
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~--~------~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v 97 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETE--T------TKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVAT 97 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhcccc--c------CCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEE
Confidence 35678877742 1233 56666666654321 0 111222345567888888886322 12366
Q ss_pred EEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-C-CCCCCCHHHHHHhhc---C
Q 012718 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-N-DDESPDLDKLKEMLS---R 207 (458)
Q Consensus 133 ~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~-~~~~~d~~~l~~~l~---~ 207 (458)
++|+|+++|+.+++.++. .+++||+|++++|+|+. +...++..|++++.++. + +++.+|++.+++.+. .
T Consensus 98 ~iT~Ga~~al~~~~~~l~--~~~pGd~Vlv~~P~y~~----~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~ 171 (396)
T PRK09257 98 VQTPGGTGALRVGADFLK--RAFPDAKVWVSDPTWPN----HRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA 171 (396)
T ss_pred EecCCccHHHHHHHHHHH--HhCCCCeEEECCCCccc----HHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCC
Confidence 899999999999987652 24799999999999994 46667778999999997 3 346789999998876 3
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-------cC-CCCC-CCCcEEEecccCCCCCC
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-------VV-DVQG-LDADFLVASSHKMCGPT 275 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-------~~-~~~~-~~~d~~~~s~~K~~gp~ 275 (458)
++.++++++++||||.+++ +++|+++|++||++||+|++|..-.. ++ .+.. ....++++|+||.++++
T Consensus 172 ~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~ 251 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLY 251 (396)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccc
Confidence 4577778999999999999 67889999999999999999873211 00 1111 23468889999999988
Q ss_pred c--eeEEEE--e-cccc----ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH--H---HhC
Q 012718 276 G--IGFLFG--K-SDLL----SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL--S---TIG 341 (458)
Q Consensus 276 g--~G~l~~--~-~~~~----~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~--~---~~g 341 (458)
| +||+++ . ++.+ ..+..... ...++++.....++...+..- . ...
T Consensus 252 GlRiG~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 310 (396)
T PRK09257 252 GERVGALSVVAEDAEEADRVLSQLKATIR---------------------TNYSNPPAHGAAIVATILNDPELRAEWEAE 310 (396)
T ss_pred cccceeEEEEeCCHHHHHHHHHHHHHHhh---------------------hhcCCCcHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8 999984 2 2222 22211110 011223333333333333211 0 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhH
Q 012718 342 MQKIHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLH 418 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~ 418 (458)
++++++++++.++.+.+.|++.. ++++..+. .+.++|++++ . ++...+.++.||.+.+
T Consensus 311 ~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~------gg~~~w~~l~---~-~~~~~l~~~~~V~~~p--------- 371 (396)
T PRK09257 311 LEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQ------RGMFSYSGLT---P-EQVDRLREEFGVYAVG--------- 371 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc------ceEEEecCCC---H-HHHHHHHHcCCEEEcC---------
Confidence 56678888999999999998762 25554443 1557888764 2 4445554444998853
Q ss_pred hhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 419 RYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 419 ~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.+ ||+++. .++++|++++++|++++
T Consensus 372 -----~~--ri~~~~-~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 372 -----SG--RINVAG-LNESNIDYVAEAIAAVL 396 (396)
T ss_pred -----CC--eEEEee-CCHHHHHHHHHHHHhhC
Confidence 12 999975 68899999999998753
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=211.81 Aligned_cols=342 Identities=15% Similarity=0.164 Sum_probs=240.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCC-cchhhhHHHHH-HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRG-IHFLSAKATDE-YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
+-..+++.+.+++...+...+..-..+ .++.|-..... ...+.++..++||++.. -|-..||+.|+..+..++
T Consensus 57 sEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~a--nvqp~Sg~~An~~v~~al--- 131 (493)
T PRK13580 57 SENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHA--YVQPHSGADANLVAFWAI--- 131 (493)
T ss_pred ccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcc--cccCCCcHHHHHHHHHHH---
Confidence 444577888888887776533221112 22223333444 44478888999998843 344567888999999888
Q ss_pred CCCC-------------------------------CCEEEEcCCCCccchH-HHHHHHHHcCCeEEEEeCCC-CCCCCHH
Q 012718 153 NLKS-------------------------------GDEVILTVAEHHSAIV-PWQLVAQKTGANLKFLNLND-DESPDLD 199 (458)
Q Consensus 153 ~~~~-------------------------------g~~vl~~~~~~~s~~~-~~~~~a~~~g~~~~~v~~~~-~~~~d~~ 199 (458)
++| ||+|+..+..+.+.+. .+..-......+++.+++++ ++.+|.+
T Consensus 132 -l~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d 210 (493)
T PRK13580 132 -LAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYD 210 (493)
T ss_pred -hcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHH
Confidence 443 7999988766644321 11110111125667777774 5889999
Q ss_pred HHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCC------CCCCcEEEecccCC-C
Q 012718 200 KLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ------GLDADFLVASSHKM-C 272 (458)
Q Consensus 200 ~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~------~~~~d~~~~s~~K~-~ 272 (458)
++++.+.++++.+++++.+|. |...|+++|.++|+++|+++++|++|++|.++.+.. ..++|++++|+||+ +
T Consensus 211 ~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~ 289 (493)
T PRK13580 211 EIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLR 289 (493)
T ss_pred HHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhcc
Confidence 999999999999999999888 558899999999999999999999999988764431 12689999999995 4
Q ss_pred CCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 012718 273 GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 273 gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l 352 (458)
||.| |++++++++++.+.... .+..|++..+.++++..++..+.+.+...+++++.++
T Consensus 290 GP~G-G~I~~~~~l~~~L~~a~---------------------P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~N 347 (493)
T PRK13580 290 GPRG-GLVLAKKEYADAVDKGC---------------------PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDN 347 (493)
T ss_pred CCCe-EEEEecHHHHHHHhhCC---------------------CcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 8885 99999988766652110 1223566666777777777777655567789999999
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC--hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 353 AKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH--PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 353 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
+++|.+.|.+. |+++...... .+++.+.+.+.. ...+.+.|.+. ||.+.....+..+... + .+..|||+
T Consensus 348 a~~La~~L~~~-G~~vv~ggTd-----shIV~V~lg~~~~~g~~a~~~L~e~-GI~vn~i~~Ptvp~g~-~-~~srLRIg 418 (493)
T PRK13580 348 ARALAEGFLKR-GARLVTGGTD-----NHLVLIDVTSFGLTGRQAESALLDA-GIVTNRNSIPSDPNGA-W-YTSGIRLG 418 (493)
T ss_pred HHHHHHHHHhc-CCCccCCCCC-----CCEEEEEeCCHHHHHHHHHHHHHHC-CeEEccccCCCCCCCC-C-CCceEEec
Confidence 99999999987 8887643211 678888886532 34566788888 9998754433322110 0 15689999
Q ss_pred eCCC----CCHHHHHHHHHHHHHHHHhh
Q 012718 431 LHFY----NTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 431 ~~~~----~t~~di~~l~~~l~~~~~~~ 454 (458)
+... .+++|++++++.|.++++..
T Consensus 419 ~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 419 TPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred cchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 8873 46999999999999988753
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-25 Score=213.79 Aligned_cols=318 Identities=19% Similarity=0.210 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+.+++.+|++.|.+ ..++++||+.|+..++.++ +++||+|+++.+.|+++...+...++..|++++.++.
T Consensus 64 p~~~~Le~~lA~leg~~---~al~~~sG~~Ai~~al~~l----l~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 64 PTTDVFEKRIAALEGGI---GALAVSSGQAAITYSILNI----ASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred chHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC
Confidence 34556889999999975 7789999999999999887 7899999999999998887788888889999999986
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. |++++++++++++++|++++++||||.+.|+++|.++||++|+++|+|++++.+.....+ ++++|+++.|++|
T Consensus 137 ~-----d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl-~~gaDivv~S~tK 210 (431)
T PRK08248 137 S-----DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPI-EHGADIVVHSATK 210 (431)
T ss_pred C-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChh-HcCCCEEEEcCcc
Confidence 4 889999999999999999999999999999999999999999999999999866543333 6789999999999
Q ss_pred CCCCCc--eeEEEEec-ccc-ccCC--CccccCcceEeeecCCCCC-CCCC------------CccCCCCCCHHHHHHHH
Q 012718 271 MCGPTG--IGFLFGKS-DLL-SAMP--PFLGGGEMISDVFLDHSTF-ADPP------------SRFEAGTPAIGEAIGLG 331 (458)
Q Consensus 271 ~~gp~g--~G~l~~~~-~~~-~~l~--~~~~g~~~~~~~~~~~~~~-~~~~------------~~~~~gt~~~~~~~~l~ 331 (458)
++|++| +|.+++.. +.. ..-. +..... ........| .... .+......+....+.+.
T Consensus 211 ~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~ 286 (431)
T PRK08248 211 FIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEP----DPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLL 286 (431)
T ss_pred ccCCCCCceEEEEEeCCccccccccccccccCC----ccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 888777 66666643 211 0000 000000 000000000 0000 00001112221111111
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc-----------CccccEEEEEeCCCChHHHHHHH
Q 012718 332 AAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSEH-----------VQRAALCSFNVENIHPTDIATLL 399 (458)
Q Consensus 332 ~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~~~l 399 (458)
+-++. ++...++..+++..+.+.|+++|.++ +..|.-..+ ...+++++|.+.+ ...+..+.+
T Consensus 287 ---rgl~t--l~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~-~~~~~~~f~ 360 (431)
T PRK08248 287 ---QGLET--LHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKG-GVEAGKKLI 360 (431)
T ss_pred ---cCcCc--HHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC-CHHHHHHHH
Confidence 11111 34555777788999999999998766 333321110 2346799999975 223333332
Q ss_pred hhh--cCeEeccCCCCC------hh--------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 400 DQQ--YGVATRSGHHCA------QP--------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 400 ~~~--~gi~~~~g~~~~------~~--------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
..- ..+.++-|...+ .. .....|. ++.||+|++. ||++.|++.|.++++.++
T Consensus 361 ~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~Dl~~Al~~~~ 429 (431)
T PRK08248 361 DSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGT----EAIDDILDDLRQAIRQSQ 429 (431)
T ss_pred HhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhhh
Confidence 222 122223333111 11 1113444 6799999998 888999999999888654
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=203.05 Aligned_cols=335 Identities=20% Similarity=0.204 Sum_probs=234.2
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
..+...+++.+.++. ++... .....++++.+++++|++ ..+.++|+|.|+.+++.++. +.+||
T Consensus 13 i~~~e~~~v~~vl~s-------g~i~~----G~~v~~FE~~~ae~~G~k---~ava~~sgT~AL~laL~al~---ig~GD 75 (374)
T COG0399 13 IGEEELAAVQEVLKS-------GWLTG----GPFVRRFEQAFAEYLGVK---YAVAVSSGTAALHLALLALA---IGPGD 75 (374)
T ss_pred cchHHHHHHHHHHHc-------CCeec----ChHHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHhcC---CCCCC
Confidence 456677777777764 33322 234456779999999998 78999999999999999884 89999
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV 237 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~ 237 (458)
.|+++..+|.++..+.. ..|++++.|+++++ +.+|++.++++|++++++|+..|. .|...++++|.++|++|
T Consensus 76 eVI~ps~TfvATan~i~----~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl---~G~~~dm~~i~~la~~~ 148 (374)
T COG0399 76 EVIVPSFTFVATANAVL----LVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHL---AGQPCDMDAIMALAKRH 148 (374)
T ss_pred EEEecCCchHHHHHHHH----HcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehh---ccCCCCHHHHHHHHHHc
Confidence 99999999998755443 45999999999966 889999999999999999999998 99999999999999999
Q ss_pred CcEEEEeccccCCcccCCCCCCC--CcEEEeccc--CCCCCCceeEEEEec-cccccCCCccccCcceEeeecCCCCCCC
Q 012718 238 GAKVLVDACQSVPHMVVDVQGLD--ADFLVASSH--KMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFAD 312 (458)
Q Consensus 238 ~~~vivD~a~~~g~~~~~~~~~~--~d~~~~s~~--K~~gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 312 (458)
|++||+|++|++|+. ..-++.| -|+.++||| |.++-...|+++.++ ++.++++.+.. ++...+. ...|..
T Consensus 149 ~l~vIEDaAqa~Ga~-y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~-hG~~~~~---~~~y~~ 223 (374)
T COG0399 149 GLPVIEDAAQAHGAT-YKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRN-HGLSRDA---VFKYLH 223 (374)
T ss_pred CCeEEEEcchhccCe-ecCcccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHH-hCcCCCc---ccccee
Confidence 999999999999987 3333333 477788777 766544567777776 44455443322 2211100 011111
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeCC--
Q 012718 313 PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVEN-- 389 (458)
Q Consensus 313 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~-- 389 (458)
..-++.. -..-+.++..+..|.. +++..++.+++++++.+.|+.++++.+...... ..+.- ...+.++.
T Consensus 224 ~~~G~N~----rm~~iqAAigl~QL~~--l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~--~~~~~~~~~i~~~~~~ 295 (374)
T COG0399 224 EELGYNY----RLTEIQAAIGLAQLER--LDEINERRREIAQIYAEALKGLPGITLPPEPDG--AVHAWHLYTILVDEEG 295 (374)
T ss_pred eeccccc----CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCccccCCCCC--ceeeeeeeEEEecCCC
Confidence 1111211 1111222233445554 688888889999999999999877665544432 11222 33344443
Q ss_pred CChHHHHHHHhhhcCeEeccCCCCCh----hhHhhcC-----C--------CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 390 IHPTDIATLLDQQYGVATRSGHHCAQ----PLHRYLG-----V--------NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 390 ~~~~~~~~~l~~~~gi~~~~g~~~~~----~~~~~~g-----~--------~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++.+.+.+.|+++ ||.. ..++.+ +.+...+ . ...+++-+++..+.+|++++++.|++++.
T Consensus 296 ~~R~~l~~~L~~~-gi~~--~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~ 372 (374)
T COG0399 296 ISRDALMESLKEA-GVGA--VVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLG 372 (374)
T ss_pred CCHHHHHHHHHhC-CCCc--eEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhc
Confidence 6788999999988 8762 122211 1222111 1 46788888888999999999999999876
Q ss_pred h
Q 012718 453 F 453 (458)
Q Consensus 453 ~ 453 (458)
.
T Consensus 373 ~ 373 (374)
T COG0399 373 S 373 (374)
T ss_pred c
Confidence 4
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=212.00 Aligned_cols=299 Identities=22% Similarity=0.268 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+.+++.+|++.|.+ ++++++|+++|+.+++.++ +++||+|+++.+.|.+....+..++...|+++..++.
T Consensus 51 p~~~~le~~lA~l~g~~---~v~~~~gg~~Ai~~~l~al----l~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~ 123 (382)
T TIGR02080 51 PTRDLLQQALAELEGGA---GAVVTNTGMSAIHLVTTAL----LGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ 123 (382)
T ss_pred chHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHH----cCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC
Confidence 34557889999999853 7999999999999999988 7899999999999998776666666666778877753
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. |++.+++++++++++|++++++||||.+.|+++|.++|+++|+++++|++|+.+.....+ ..+.|+++.|++|
T Consensus 124 ~-----d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl-~~gaDivv~S~sK 197 (382)
T TIGR02080 124 G-----DEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPL-ALGADLVLHSCTK 197 (382)
T ss_pred C-----CHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCEEEeecce
Confidence 2 789999999989999999999999999999999999999999999999999877543222 4578999999999
Q ss_pred CCC-CCc--eeEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 271 MCG-PTG--IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 271 ~~g-p~g--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
+++ +.+ .|+++.+ +++++++..+.. ....+.+......+ +.-++. +....
T Consensus 198 ~l~G~~~~~~G~i~~~~~~~~~~l~~~~~---------------------~~g~~~sp~~a~l~---lr~l~t--l~~R~ 251 (382)
T TIGR02080 198 YLNGHSDVIAGAVIAKDPQVAEELAWWAN---------------------NLGVTGGAFDSYLT---LRGLRT--LVARM 251 (382)
T ss_pred eccCCCCceeEEEEeCCHHHHHHHHHHHH---------------------ccCCCCCHHHHHHH---Hcccch--HHHHH
Confidence 654 565 7887775 445444432211 00112333222222 232322 23335
Q ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhh--cCeEeccCCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQ--YGVATRSGHHC 413 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~--~gi~~~~g~~~ 413 (458)
++..+++..+.+.|++.|.++ +..|.-..+ ...+++++|.+.+ +...+.+.+..- +++.++-|...
T Consensus 252 ~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~~~~~~~s~G~~~ 330 (382)
T TIGR02080 252 RLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG-GEQTVRRFLGGLSLFTLAESLGGVE 330 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC-cHHHHHHHHHcCCcceEeccCCCCc
Confidence 566688888899998887765 443321111 2456799999974 233333333321 13333333311
Q ss_pred C------h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 414 A------Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 414 ~------~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+ . ......|. ++.+|+|++. ||++.+++.|++++++
T Consensus 331 sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~dl~~dl~~al~~ 381 (382)
T TIGR02080 331 SLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGL----EDADDLIADLEQGLRA 381 (382)
T ss_pred ceeECCCccCcccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence 1 0 11123444 5799999997 7888889888888763
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=210.00 Aligned_cols=341 Identities=17% Similarity=0.166 Sum_probs=226.4
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
..++..+++.+.+... .... ....+++++.+++++|.+ +.++++|+|+|+.+++.++ .+++||
T Consensus 8 ~~~~~~~~v~~~~~~~-------~~~~----g~~~~~le~~la~~~g~~---~~v~~~sgt~al~~~l~al---~~~~Gd 70 (380)
T TIGR03588 8 IDQDDIDAVVEVLKSD-------FLTQ----GPTVPAFEEALAEYVGAK---YAVAFNSATSALHIACLAL---GVGPGD 70 (380)
T ss_pred CCHHHHHHHHHHHhcC-------CccC----ChhHHHHHHHHHHHHCCC---eEEEEcCHHHHHHHHHHHc---CCCCCC
Confidence 4556677777766531 1111 233567899999999986 4566778999999999988 478999
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhc----CCceEEEEecccCcCcccccHHHHHHH
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLS----RKTKLVVIHHISNMLASILPIEEIVHW 233 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~l~~i~~l 233 (458)
+|+++.++|.+. ...+...|++++.+++++ ++.+|++++++.++ +++++|++++ ++|...++++|.++
T Consensus 71 ~Viv~~~~~~~~----~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~~~~i~~l 143 (380)
T TIGR03588 71 RVWTTPITFVAT----ANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVDMQAIAAL 143 (380)
T ss_pred EEEeCCcchHHH----HHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCCHHHHHHH
Confidence 999999999855 444566799999999964 57789999999998 6888888655 48999999999999
Q ss_pred HHhcCcEEEEeccccCCcccCCCCCCCC----cEEEeccc--CCCCCCceeEEEEe-ccccccCCCccccCcceEeeecC
Q 012718 234 SHDVGAKVLVDACQSVPHMVVDVQGLDA----DFLVASSH--KMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 234 ~~~~~~~vivD~a~~~g~~~~~~~~~~~----d~~~~s~~--K~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
|+++|++||+|++|++|.. ++....+. |+.++|+| |+++.+..|+++.+ +++.++++....++.......
T Consensus 144 ~~~~~~~lI~D~a~a~g~~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~-- 220 (380)
T TIGR03588 144 AKKHGLKIIEDASHALGAE-YGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLL-- 220 (380)
T ss_pred HHHcCCEEEEECCCcccCc-cCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCccc--
Confidence 9999999999999999876 45444555 99999998 77764345656654 455555543322211100000
Q ss_pred CCCCCCCCCccCCCCC---CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-E
Q 012718 307 HSTFADPPSRFEAGTP---AIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-L 382 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~---~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~ 382 (458)
...+...+..++.++. .-..-+....++..+.. ++++.++.+++++++.+.|.+++++.+..+... ..... .
T Consensus 221 ~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~--l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~~~~ 296 (380)
T TIGR03588 221 FEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKK--LDRFVAKRREIAARYDRLLKDLPYFTPLTIPLG--SKSAWHL 296 (380)
T ss_pred ccccccCcceeeeeccccccCccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCC--CEeEEEE
Confidence 0000111112221111 00011111222333444 688889999999999999999887765443211 11122 2
Q ss_pred EEEEeC---CCChHHHHHHHhhhcCeEeccCCCC--ChhhHhh-cCC----------CCeEEEeeCCCCCHHHHHHHHHH
Q 012718 383 CSFNVE---NIHPTDIATLLDQQYGVATRSGHHC--AQPLHRY-LGV----------NASARASLHFYNTKEDVDEFIHA 446 (458)
Q Consensus 383 v~~~~~---~~~~~~~~~~l~~~~gi~~~~g~~~--~~~~~~~-~g~----------~~~lRis~~~~~t~~di~~l~~~ 446 (458)
..+.++ +.+.+++.+.|.++ ||.++....+ ..+.+.. .+. ...+++.++...+.+|++++++.
T Consensus 297 ~~i~~~~~~~~~r~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~ 375 (380)
T TIGR03588 297 YPILLDQEFGCTRKEVFEALRAA-GIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVET 375 (380)
T ss_pred EEEEECCcCCCCHHHHHHHHHHC-CCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHH
Confidence 333343 35788999999988 9988754322 1111111 010 37899999998999999999999
Q ss_pred HHHHH
Q 012718 447 LNETV 451 (458)
Q Consensus 447 l~~~~ 451 (458)
|++++
T Consensus 376 l~~~~ 380 (380)
T TIGR03588 376 LRKVL 380 (380)
T ss_pred HHHhC
Confidence 98764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=215.64 Aligned_cols=306 Identities=17% Similarity=0.192 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHH-HHHcCCeEEE
Q 012718 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-AQKTGANLKF 187 (458)
Q Consensus 109 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-a~~~g~~~~~ 187 (458)
.....+++++.+|+++|.+ .+++++||++|+..++.++ +++||.|+++.+.|.+....+... .+..|++++.
T Consensus 74 ~~Pt~~~LE~~lA~l~g~~---~~l~~~sG~~Ai~~al~al----~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~ 146 (418)
T PLN02242 74 FNPTVLNLGRQMAALEGTE---AAYCTASGMSAISSVLLQL----CSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTF 146 (418)
T ss_pred CChhHHHHHHHHHHHhCCC---eEEEEccHHHHHHHHHHHH----hCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEE
Confidence 3456778889999999987 6678999999999999988 789999999999998665443332 2346888887
Q ss_pred EeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEe
Q 012718 188 LNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVA 266 (458)
Q Consensus 188 v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~ 266 (458)
++.. |++.+++++++ ++++|++++++||||.+.++++|+++|+++|+++|+|++|+... .+...++.|+++.
T Consensus 147 ~d~~-----d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~--~~~~~~g~divv~ 219 (418)
T PLN02242 147 VDIT-----DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMV--LSPARLGADVVVH 219 (418)
T ss_pred cCCC-----CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccC--CCHHHcCCcEEEE
Confidence 7754 89999999988 59999999999999999999999999999999999999997433 3434557999999
Q ss_pred cccCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 267 SSHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 267 s~~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
|++|.+++.| +|+++.++++++.+..+..+. ....|.+...+ .++..++. +. .+.
T Consensus 220 S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~------------------~~~~g~~~~~~-~A~l~~~~-l~--tl~ 277 (418)
T PLN02242 220 SISKFISGGADIIAGAVCGPAELVNSMMDLHHGA------------------LMLLGPTMNPK-VAFELSER-LP--HLS 277 (418)
T ss_pred eCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh------------------hhccCCCCCHH-HHHHHHcC-CC--cHH
Confidence 9999887666 599998888776655332110 00112222111 22211111 11 244
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc-------------CccccEEEEEeCCC-ChHHHHHHHhhh---cCeE
Q 012718 344 KIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH-------------VQRAALCSFNVENI-HPTDIATLLDQQ---YGVA 406 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~-~~~~~~~~l~~~---~gi~ 406 (458)
...++..++++++.+.|+++ ++++..|.-..+ ...+++++|.+.+. ....+++.+.-- ..+.
T Consensus 278 ~r~~~~~~~a~~la~~L~~~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~~~~~~~~~~ 356 (418)
T PLN02242 278 LRMKEHCRRAMEYAKRMKEL-GLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMA 356 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHHHHHHhhcccccceee
Confidence 45567788999999999988 577775541110 13567999999631 122333333310 0122
Q ss_pred eccCCCCChh--------------hHhhcCC-CCeEEEeeCCCCCHHH-HHHHHHHHHHHHHhhh
Q 012718 407 TRSGHHCAQP--------------LHRYLGV-NASARASLHFYNTKED-VDEFIHALNETVSFFN 455 (458)
Q Consensus 407 ~~~g~~~~~~--------------~~~~~g~-~~~lRis~~~~~t~~d-i~~l~~~l~~~~~~~~ 455 (458)
+.-|...+-- .....|. ++.+|+|++. || ++.+++.|+++++.++
T Consensus 357 ~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~~dli~dl~~al~~~~ 417 (418)
T PLN02242 357 VSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGY----TGTLEQRWSQFEKALSAMK 417 (418)
T ss_pred ecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecC----CCCHHHHHHHHHHHHHHhh
Confidence 3334322210 1112343 5689999997 74 8889999999887654
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=190.98 Aligned_cols=372 Identities=17% Similarity=0.200 Sum_probs=290.4
Q ss_pred CCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhh-HHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 65 SKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSA-KATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 65 ~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+++.|||..++.|.+|+.+.+.+.+.+++|...... .|..|. ++...-+.....++.++|++.. +|.+.++-|.-++
T Consensus 65 d~~~iYlcGNSLGLmPK~t~~~~~~eLDkWak~av~-gH~~GkvPW~~~De~il~l~~~iVGA~e~-EvavmNsLTvNlh 142 (465)
T KOG3846|consen 65 DKPVIYLCGNSLGLMPKSTRNSINAELDKWAKCAVE-GHFKGKVPWVSIDEPILPLLAPIVGAQEN-EVAVMNSLTVNLH 142 (465)
T ss_pred CCCeEEEeccccccCchhhHhHHHHHHHHHHhhhhh-cccccccceeecchhhhhhhhhhccCCch-hhhhHhhhhhHHH
Confidence 578999999999999999999999999987654432 222232 3445556677889999999986 9999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEE----EEeCCCC-CCCCHHHHHHhhcC---CceEEEEe
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK----FLNLNDD-ESPDLDKLKEMLSR---KTKLVVIH 215 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~----~v~~~~~-~~~d~~~l~~~l~~---~~~~v~~~ 215 (458)
.++.++.. ...+.-+|+.....|+|.++++..-++..|..+. -+...+. ..+..+++-..|.. ..++|+++
T Consensus 143 ~Ll~sFyK-PTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fS 221 (465)
T KOG3846|consen 143 SLLISFYK-PTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFS 221 (465)
T ss_pred HHHHHhcC-CcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEee
Confidence 99988832 2344568999999999999999998888887643 3332222 33455566555544 46899999
Q ss_pred cccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCC--CCCceeEEEEeccccccCCCc
Q 012718 216 HISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 216 ~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~--gp~g~G~l~~~~~~~~~l~~~ 293 (458)
.++..||+.+++.+|...-+..|+++=.|-+|++|.+|+.+.+|++||.++..+|.+ |++|+|-+++.++..+...+.
T Consensus 222 GvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~pr 301 (465)
T KOG3846|consen 222 GVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPR 301 (465)
T ss_pred cceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeeehhhhcchhhH
Confidence 999999999999999977778899999999999999999999999999999999943 567799999988876666555
Q ss_pred cccCcc-eEeeecCC---CCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC------
Q 012718 294 LGGGEM-ISDVFLDH---STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI------ 363 (458)
Q Consensus 294 ~~g~~~-~~~~~~~~---~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~------ 363 (458)
..||-. .....+.+ -+..+++.+|..+.|+.....++..+|+.+.+..+.+++++..-+..||...++..
T Consensus 302 l~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~ 381 (465)
T KOG3846|consen 302 LAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHP 381 (465)
T ss_pred HhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCch
Confidence 544443 22222222 34456678999999999999999999999999889999999988888887777654
Q ss_pred -----CCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCH
Q 012718 364 -----PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTK 437 (458)
Q Consensus 364 -----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~ 437 (458)
+-+.+..|... ..+|.-+++.+.. +..++.+.|.++ |+.+.... ++.||+.+ +.||+.
T Consensus 382 ~rt~Kl~~~IiTP~~~--~erGcQLsl~Fss-p~~~vfqeL~kr-Gv~~DkR~------------PNvIRvAPvpLYN~f 445 (465)
T KOG3846|consen 382 LRTEKLFFTIITPTST--DERGCQLSLYFSS-PTPKVFQELHKR-GVIGDKRR------------PNVIRVAPVPLYNTF 445 (465)
T ss_pred hhhcceeEEEeCCccc--ccccceEEEEeCC-CchHHHHHHHHc-CeeccccC------------CCceEeecchhhccH
Confidence 24667777665 4556666666554 246899999999 99875332 78999985 699999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 012718 438 EDVDEFIHALNETVSFFN 455 (458)
Q Consensus 438 ~di~~l~~~l~~~~~~~~ 455 (458)
.||.+++..|.+++..+.
T Consensus 446 ~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 446 SDVYIFVNALNEAMDKLE 463 (465)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999988654
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=214.29 Aligned_cols=297 Identities=22% Similarity=0.257 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
....++++.+|++.|.+. . ++++||++|+.+++.++ +++||+|+++.+.|.+....+....+..|++++.++.
T Consensus 61 p~~~~Le~~lA~~~g~~~--~-i~~~sG~~Ai~~~l~al----l~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~ 133 (388)
T PRK07811 61 PTRTALEEQLAALEGGAY--G-RAFSSGMAATDCLLRAV----LRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL 133 (388)
T ss_pred ccHHHHHHHHHHHhCCCc--e-EEeCCHHHHHHHHHHHH----hCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC
Confidence 446689999999999873 3 55567799999999988 7899999999999998766666555667888888875
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. |++++++.+++++++|++++++||+|.+.++++|+++|+++|+++|+|++|+.+.....+ ..+.|++++|++|
T Consensus 134 ~-----d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~-~~gaDivv~S~sK 207 (388)
T PRK07811 134 S-----DLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL-ALGADVVVHSTTK 207 (388)
T ss_pred C-----CHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch-hhCCcEEEecCce
Confidence 3 899999999999999999999999999999999999999999999999999987653223 4579999999999
Q ss_pred CCCCCc---eeEEEEecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 271 MCGPTG---IGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 271 ~~gp~g---~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
+++++| .|+++++++ +.+.+.......+ .+.+.... ..++..++. ++...
T Consensus 208 ~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g---------------------~~~s~~~a---~l~~~~L~t--l~~R~ 261 (388)
T PRK07811 208 YIGGHSDVVGGALVTNDEELDEAFAFLQNGAG---------------------AVPGPFDA---YLTLRGLKT--LAVRM 261 (388)
T ss_pred eecCCCCcEEEEEEECCHHHHHHHHHHHHhcC---------------------CCCCHHHH---HHHHhccCc--HHHHH
Confidence 776543 688888653 4333332211101 11222111 122222222 44555
Q ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCe---EeccCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSGHH 412 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g~~ 412 (458)
++..+++..+.+.|++.|+++ +..|.-..+ ...+++++|.+.+ +..+..+.+..- .+ ..+-|..
T Consensus 262 ~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l-~~~~~~~s~G~~ 339 (388)
T PRK07811 262 DRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG-GEEAARDFCART-KVFTLAESLGGV 339 (388)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC-CHHHHHHHHHhC-CcceeeccCCCC
Confidence 666788999999999998776 333321110 2356799999974 233333333322 33 2233331
Q ss_pred CC------hhhH-----hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 413 CA------QPLH-----RYLGV-NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 413 ~~------~~~~-----~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
.+ ...+ ...|. ++.||+|++. ||.+.+++.|.++++
T Consensus 340 ~sl~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 387 (388)
T PRK07811 340 ESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI----EDVADLLADLEQALG 387 (388)
T ss_pred cceEeCCcccCcccCCHhhcCCCCCEEEEEeCC----CCHHHHHHHHHHHhh
Confidence 11 0011 12343 5789999998 788888888887764
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=214.00 Aligned_cols=316 Identities=15% Similarity=0.158 Sum_probs=211.4
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
+-|..+..+.+++.+.+++.+....... +.......++++++++++|.+ .+++++|+++++.+++.+
T Consensus 2 ~~~~~~~~~~p~~~~~~a~~~~~~~~~~----------Y~~~~~~~~L~~~la~~~g~~---~~~v~~~g~~a~~~~l~~ 68 (333)
T PRK10534 2 IDLRSDTVTRPSRAMLEAMMAAPVGDDV----------YGDDPTVNALQDYAAELSGKE---AALFLPTGTQANLVALLS 68 (333)
T ss_pred cccccccCCCCCHHHHHHHHhccCCCcc----------cCCCHHHHHHHHHHHHHhCCC---eEEEeCchHHHHHHHHHH
Confidence 3455555555888888888664322111 112345668999999999987 457888888888888776
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecccCcCc
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNMLA 222 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG 222 (458)
+ +.+||+|+++.+.|....... ......+++++.++.++++.+|++++++++++ ++++|++++++ +|
T Consensus 69 ~----~~~gd~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G 141 (333)
T PRK10534 69 H----CERGEEYIVGQAAHNYLYEAG-GAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NG 141 (333)
T ss_pred h----cCCCCeeEEechhhhhHhcCC-chHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CC
Confidence 6 679999999888775332110 01112236888888877888999999999876 58899998654 69
Q ss_pred ccccHH---HHHHHHHhcCcEEEEeccccCCcc---cCCCC--CCCCcEEEecccCCCCCCcee-EEEEeccccccCCCc
Q 012718 223 SILPIE---EIVHWSHDVGAKVLVDACQSVPHM---VVDVQ--GLDADFLVASSHKMCGPTGIG-FLFGKSDLLSAMPPF 293 (458)
Q Consensus 223 ~~~~l~---~i~~l~~~~~~~vivD~a~~~g~~---~~~~~--~~~~d~~~~s~~K~~gp~g~G-~l~~~~~~~~~l~~~ 293 (458)
.++|.+ +|.++|+++++++++|++|.++.. ..... ....|.++.|+||.+|.. +| +++.++++++.+..+
T Consensus 142 ~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~-~G~~~~~~~~~i~~~~~~ 220 (333)
T PRK10534 142 KVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP-VGSLLVGNRDYIKRARRW 220 (333)
T ss_pred eecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc-ccceEEcCHHHHHHHHHH
Confidence 999955 556788999999999999775321 01110 112466667999988865 56 677788887766543
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
...++ +..+... .+..+++..+.. ..+..++..+.++++.+.|+++ |+++..+.
T Consensus 221 ~~~~~---------------------~~~~~~~-~~~a~~~~~l~~--~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~- 274 (333)
T PRK10534 221 RKMTG---------------------GGMRQAG-ILAAAGLYALKH--NVARLQEDHDNAAWLAEQLREA-GADVMRQD- 274 (333)
T ss_pred HHHhC---------------------CchhhHH-HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhC-CCccCCCC-
Confidence 32110 0111111 112222233322 1223333445678999999987 88765442
Q ss_pred CCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++++++++++.+..++.+.|.++ ||.++++. .+|++.++-+|.+++++++++|++++.
T Consensus 275 ------~nfv~~~~~~~~~~~~~~~l~~~-gi~v~~~~--------------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 275 ------TNMLFVRVGEEQAAALGEYMRER-NVLINASP--------------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred ------ceEEEEECCchhHHHHHHHHHHc-CeeecCCc--------------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 77899988754567888888888 99998652 578888766799999999999997764
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=210.57 Aligned_cols=321 Identities=14% Similarity=0.158 Sum_probs=221.7
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
|+.++.+.+++.+.+.+...... .+ . .....++.+.++++++.+..+++++++|+++|+..++..+. ...
T Consensus 58 G~~~p~v~~ai~~~~~~~~~~~~--~~----~-~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~---~~g 127 (398)
T PRK03244 58 GHAHPAVVEAVTRQLATLGHVSN--LF----A-TEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLAR---LTG 127 (398)
T ss_pred CCCCHHHHHHHHHHHHhccCccC--cc----C-CHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHH---HHC
Confidence 45578999999998876432111 01 1 12224788899999885432489999999999999998763 222
Q ss_pred CCEEEEcCCCCccchHHHHHHHHH---------cCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccccc-
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQK---------TGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP- 226 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~---------~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~- 226 (458)
+++|+..+++|++.......+... .+.++..+|. .|++.+++.+.+++++|+++.++|++|.++|
T Consensus 128 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~ 202 (398)
T PRK03244 128 RTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-----GDVDALAAAVDDDTAAVFLEPIQGEAGVVPPP 202 (398)
T ss_pred CCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-----CCHHHHHHhhcCCeEEEEEecccCCCCCcCCC
Confidence 357788888998775443322110 0112233332 2789999998778899999999999999998
Q ss_pred ---HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC-CceeEEEEeccccccCCCccccC
Q 012718 227 ---IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGG 297 (458)
Q Consensus 227 ---l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~ 297 (458)
+++|.++|++||+++|+|++|. +|.. ........+|++ +++|.+|+ ..+|++++++++++.+.....+
T Consensus 203 ~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~- 279 (398)
T PRK03244 203 AGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVV--TLAKGLGGGLPIGACLAFGPAADLLTPGLHG- 279 (398)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEE--EEchhhhCCcccEEEEEcHHHHhhccCCCCc-
Confidence 8899999999999999999986 2211 112234457876 56897763 3389999998877666432111
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcC
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHV 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~ 377 (458)
. ....+.....+..++|+.+.+ +.+.++++++.+++.+.|+++ ++.+.... .
T Consensus 280 -------------------~-t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~-~~~~~~~v----~ 331 (398)
T PRK03244 280 -------------------S-TFGGNPVACAAALAVLDTIAS---EGLLENAERLGEQLRAGIEAL-GHPLVDHV----R 331 (398)
T ss_pred -------------------C-CCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhc-CCCceeeE----e
Confidence 0 113444555566666665554 356788888899999999875 22211111 1
Q ss_pred ccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 378 QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 378 ~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
..+.++++.++......+.+.+.++ ||.+++.. .+.+|++++...+++||+++++.|++++++++.
T Consensus 332 g~g~~~~i~~~~~~~~~~~~~l~~~-Gv~~~~~~------------~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~~ 397 (398)
T PRK03244 332 GRGLLLGIVLTAPVAKAVEAAAREA-GFLVNAVA------------PDVIRLAPPLIITDAQVDAFVAALPAILDAAAA 397 (398)
T ss_pred eccEEEEEEEeccHHHHHHHHHHHC-CeEEeecC------------CCEEEEECCCcCCHHHHHHHHHHHHHHHHhccc
Confidence 2367888888644466788899988 99987532 468999999989999999999999999987653
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=217.30 Aligned_cols=335 Identities=14% Similarity=0.045 Sum_probs=220.1
Q ss_pred CCeEEecCCCC--CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-----CCCcEE--EeC
Q 012718 66 KKLVYLDNAAT--SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIV--FTK 136 (458)
Q Consensus 66 ~~~i~l~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~~v~--~t~ 136 (458)
++.+.|..+.. ...+....+++.+++...... ....++....+..++|+++++++... .+++|+ .|.
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~----~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~ 104 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEK----NLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQAL 104 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhccc----cCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeecc
Confidence 45678877763 233444556666655432210 01112233456678999999876321 223777 488
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhc---CCceE
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLS---RKTKL 211 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~---~~~~~ 211 (458)
|+++|+.+++..+. ..+++||.|++++|+|+ .+...++..|++++.+++. +++.+|++.+++.+. +++++
T Consensus 105 G~~~al~~~~~~l~-~~~~~Gd~Vlv~~P~y~----~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~ 179 (404)
T PTZ00376 105 SGTGALRLGFEFLK-RFLPAGTTVYVSNPTWP----NHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVV 179 (404)
T ss_pred CcchHHHHHHHHHH-HhcCCCCEEEEcCCCch----hHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEE
Confidence 99999988875321 02689999999999999 5567778889999999984 347789999999885 34678
Q ss_pred EEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc--------c-CCCCC-CCCcEEEecccCCCCCCc--
Q 012718 212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------V-VDVQG-LDADFLVASSHKMCGPTG-- 276 (458)
Q Consensus 212 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~--------~-~~~~~-~~~d~~~~s~~K~~gp~g-- 276 (458)
+++++++||||.+++ +++|+++|++||++||+|++|..-.. + ..+.. ....+++.|+||.++.+|
T Consensus 180 ~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlR 259 (404)
T PTZ00376 180 LLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGER 259 (404)
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccc
Confidence 889999999999999 66788899999999999999862211 0 11111 124688899999999777
Q ss_pred eeEEE---EeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH---HHh--CHHHHHHH
Q 012718 277 IGFLF---GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL---STI--GMQKIHAY 348 (458)
Q Consensus 277 ~G~l~---~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~---~~~--g~~~~~~~ 348 (458)
+||++ .++++++.+....... .+...++.+.....++..+++.- ..+ .+.+.+++
T Consensus 260 vG~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 322 (404)
T PTZ00376 260 IGALHIVCANKEEAANVLSQLKLI-----------------IRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGR 322 (404)
T ss_pred cceEEEEeCCHHHHHHHHHHHHHH-----------------HhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99984 4554333221100000 00001223333334444444211 111 14456678
Q ss_pred HHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 349 EMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
+++.++.+.+.|+++. ++++..+. .+.++|++++ .++++.|.+++||.+.+|
T Consensus 323 ~~~~r~~l~~~L~~~~~~~~~~~~~p~------gg~f~~~~~~----~~~~~~L~~~~~v~v~p~--------------- 377 (404)
T PTZ00376 323 IQNMRQLLYDELKALGSPGDWEHIINQ------IGMFSFTGLT----KEQVERLIEKYHIYLLDN--------------- 377 (404)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccccC------ceEEEecCCC----HHHHHHHHHhCCEeecCC---------------
Confidence 8899999999998762 23333332 1457777764 578888887779998654
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
. ||+++. .+.+++++++++|++++..
T Consensus 378 ~-Ris~~~-~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 378 G-RISVAG-LTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred C-eEEEec-cCHHhHHHHHHHHHHHHhc
Confidence 2 999975 6889999999999998763
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=214.57 Aligned_cols=300 Identities=16% Similarity=0.140 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHcC-----CCCC--CcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHH-HHHc
Q 012718 110 TDEYELARKKVAAFIN-----ASDS--GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-AQKT 181 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g-----~~~~--~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-a~~~ 181 (458)
......+|+.+++++. ..++ ++|++|+|+++++.+++.++ .++||.|++++|+|+.. ... +...
T Consensus 43 ~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l----~~~gd~Vlv~~P~y~~~----~~~~~~~~ 114 (388)
T PRK08637 43 PQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLF----VDQGDTVLLPDHNWGNY----KLTFNTRR 114 (388)
T ss_pred CCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHh----cCCCCEEEEcCCCCccH----HHHHHHhc
Confidence 3456678888887763 2222 47899999999999999988 68999999999999844 333 2346
Q ss_pred CCeEEEEeCC-CCCCCCHHHHHHhhc----CCceEEEEecccCcCccccc---HHHHHHHHHh-----cCcEEEEecccc
Q 012718 182 GANLKFLNLN-DDESPDLDKLKEMLS----RKTKLVVIHHISNMLASILP---IEEIVHWSHD-----VGAKVLVDACQS 248 (458)
Q Consensus 182 g~~~~~v~~~-~~~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~-----~~~~vivD~a~~ 248 (458)
|++++.+++. +++.+|++++++.++ +...++++++|+||||.+++ +++|+++|++ ++++||+|++|.
T Consensus 115 g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~ 194 (388)
T PRK08637 115 GAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYF 194 (388)
T ss_pred CCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccch
Confidence 9999999984 556689999998886 45567889999999999999 5677777764 899999999987
Q ss_pred CCc----ccCC----C-CCCCCc--EEEecccCCCCCCc--eeEEEEec------cccccCCCccccCcceEeeecCCCC
Q 012718 249 VPH----MVVD----V-QGLDAD--FLVASSHKMCGPTG--IGFLFGKS------DLLSAMPPFLGGGEMISDVFLDHST 309 (458)
Q Consensus 249 ~g~----~~~~----~-~~~~~d--~~~~s~~K~~gp~g--~G~l~~~~------~~~~~l~~~~~g~~~~~~~~~~~~~ 309 (458)
.-. .... + +..+.. +++.|++|.++.+| +||+++.. ++++.+.......
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~------------ 262 (388)
T PRK08637 195 GLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGL------------ 262 (388)
T ss_pred hcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHH------------
Confidence 211 1111 1 111222 33459999887777 99999753 4444332110000
Q ss_pred CCCCCCccCCCCCCHHHHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEE
Q 012718 310 FADPPSRFEAGTPAIGEAIGLGAAIDY--LSTIGMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCS 384 (458)
Q Consensus 310 ~~~~~~~~~~gt~~~~~~~~l~~al~~--~~~~g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~ 384 (458)
.+...+..+.....++..+++. +.. .+.+....+++..+.+.+.|++. +++.+..+. .+.++|
T Consensus 263 -----~~~~~~~~s~~~q~a~~~~l~~~~~~~-~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~------~g~~~~ 330 (388)
T PRK08637 263 -----IRSNISNGPHPSQSAVLRALNSPEFDK-EKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFN------SGYFMC 330 (388)
T ss_pred -----hhcccCCCCcHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccc------ceEEEE
Confidence 0001112333344444444421 111 13444555666677777777654 245554433 156888
Q ss_pred EEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 385 FNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+++++.+..++.+.+.+++||.+... .++++||+++. .+.++++.++++|.++++.+
T Consensus 331 ~~l~~~~~~~l~~~l~~~~gv~~~~~------------~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 331 LKLKGVDAEELRVHLLEKYGIGTIAL------------NETDLRIAFSC-VEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred ecCChHHHHHHHHHHhhhcceEEEec------------cCCceEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence 88875556788888854339987532 15689999986 67899999999999998765
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=213.00 Aligned_cols=296 Identities=19% Similarity=0.251 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+++++.+|+++|.+ ++++++||+.|+..++.++ +++||.|+++.+.|.+....+..+ +..|++++.+..
T Consensus 53 p~~~~lE~~lA~l~g~~---~~l~~~sG~~Ai~~~l~~l----l~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~~~ 124 (385)
T PRK08574 53 PTLRPLEEALAKLEGGV---DALAFNSGMAAISTLFFSL----LKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLAYP 124 (385)
T ss_pred ccHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH----hCCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEECC
Confidence 44567889999999975 6777889999999999887 789999999999999877665554 567888877643
Q ss_pred CCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 191 NDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
|++++++++++ ++++|++++++||+|.+.|+++|+++||++|+++++|++|+.|.....+ ..++|++++|++
T Consensus 125 ------d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~~GaDivv~S~s 197 (385)
T PRK08574 125 ------STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL-RHGADFVVHSLT 197 (385)
T ss_pred ------CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh-hhCCcEEEeeCc
Confidence 67899999988 8999999999999999999999999999999999999999877542222 567999999999
Q ss_pred CCCCCCc---eeEEEE-eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMCGPTG---IGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~gp~g---~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|+++.+| .|++++ ++++.+.+..+.. ......+....+. ++..++. +...
T Consensus 198 K~l~g~~d~~gG~vi~~~~~~~~~~~~~~~---------------------~~g~~~~p~~a~l---~l~~l~t--L~~R 251 (385)
T PRK08574 198 KYIAGHNDVVGGVAVAWSGEFLEELWEWRR---------------------RLGTIMQPFEAYL---VLRGLKT--LEVR 251 (385)
T ss_pred eeecCCCCceeEEEEECcHHHHHHHHHHHH---------------------hcCCCCCHHHHHH---HHcccCc--HHHH
Confidence 9776443 475555 4455444432211 0011222222222 2222222 3445
Q ss_pred HHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc------------CccccEEEEEeCCCChHHHHHHHhhhcCe---Eecc
Q 012718 346 HAYEMELAKYLYENLLSIPNIR-IYGPKPSEH------------VQRAALCSFNVENIHPTDIATLLDQQYGV---ATRS 409 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~ 409 (458)
.++..+++.++.+.|++.|.++ +..|.-... ...+++++|.+.+ +.++..+.+..- .+ .++-
T Consensus 252 ~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~-~~~~~~~~~~~l-~l~~~~~s~ 329 (385)
T PRK08574 252 FERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKG-GRDAVLKFLRSL-KLIKPSPSL 329 (385)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCC-CHHHHHHHHHcC-CcceEccCC
Confidence 5666678889999999887765 433321111 1246799999974 333333333322 33 2222
Q ss_pred CCCCC------h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 410 GHHCA------Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 410 g~~~~------~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
|...+ . ......|. ++.+|+|++. ||++.+++.|.+++++
T Consensus 330 G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~al~~ 384 (385)
T PRK08574 330 GGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGL----EDVEDLIEDLDQALGS 384 (385)
T ss_pred CCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhc
Confidence 32111 0 11123343 5689999997 7888889888888764
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=211.32 Aligned_cols=339 Identities=15% Similarity=0.170 Sum_probs=222.3
Q ss_pred CCCCCcHHHHHHHHHHH-HHhccCCCCCcchhhhHHHHHHHH-HHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC
Q 012718 75 ATSQKPIAVLKALQNYY-EAYNSNVHRGIHFLSAKATDEYEL-ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
+...+++.+.+++...+ ..+...........|.+....+|+ +++.+++++|.+. .+++++||+.|+..++.++
T Consensus 36 sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~--alv~~~SG~~A~~~~l~al--- 110 (416)
T PRK13034 36 SENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDY--ANVQPHSGSQANGAVYLAL--- 110 (416)
T ss_pred cccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCc--eEEecCCcHHHHHHHHHHh---
Confidence 44456889999988885 444332211122223333444444 5559999999872 4466789999999999998
Q ss_pred CCCCCCEEEEcCCCCccchH-HHHHHHHHcCCeE--EEEeCCC-CCCCCHHHHHHhhcC-CceEEEEecccCcCcccccH
Q 012718 153 NLKSGDEVILTVAEHHSAIV-PWQLVAQKTGANL--KFLNLND-DESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~-~~~~~a~~~g~~~--~~v~~~~-~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l 227 (458)
+++||+|+++...|.+... +... ...+... ..++++. ++.+|++++++.+.. ++++|+++.. .+|...|+
T Consensus 111 -~~~GD~Vl~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~--~~g~~~dl 185 (416)
T PRK13034 111 -LKPGDTILGMSLSHGGHLTHGAKV--SLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFS--AYPRELDF 185 (416)
T ss_pred -cCCCCEEEEcCccceeeeecCCcc--eeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCC--ccccccCH
Confidence 7899999999999987421 1000 0012222 3444432 366899999998854 6788877543 36888899
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCC--C-CCCcEEEecccCCC-CCCceeEEEEecc-ccccCCCccccCcceEe
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQ--G-LDADFLVASSHKMC-GPTGIGFLFGKSD-LLSAMPPFLGGGEMISD 302 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~--~-~~~d~~~~s~~K~~-gp~g~G~l~~~~~-~~~~l~~~~~g~~~~~~ 302 (458)
++|.++|+++|+++++|++|++|....... . .++|++++|+||++ ||.| |+++.+++ ..+.+......+
T Consensus 186 ~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~~~~~~~~----- 259 (416)
T PRK13034 186 ARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKINSAVFPG----- 259 (416)
T ss_pred HHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCC-eEEEECcHHHHHHHHhhcCCc-----
Confidence 999999999999999999999887633221 1 24899999999966 6665 66666554 333333221110
Q ss_pred eecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccE
Q 012718 303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAAL 382 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 382 (458)
+ .+++.+...+++..++......+..++++++.+++++|.+.|.+. |+++..+... .++
T Consensus 260 --------------~-~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~-----t~i 318 (416)
T PRK13034 260 --------------L-QGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTD-----NHL 318 (416)
T ss_pred --------------c-cCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCC-----CcE
Confidence 0 123344445555444444433345677899999999999999988 8888653211 566
Q ss_pred EEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC----CCCHHHHHHHHHHHHHHHHh
Q 012718 383 CSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF----YNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 383 v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~----~~t~~di~~l~~~l~~~~~~ 453 (458)
+.+.+. +.+...+.+.|.++ ||.+..-..... .+.-..+..+|++++. .++++|++++++.|.+++..
T Consensus 319 ~~v~~~~~~~~~~~~~~~L~~~-GI~v~~~~~p~~--~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 319 LLVDLRPKGLSGKDAEQALERA-GITVNKNTVPGD--TESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred EEEEcCCCCCCHHHHHHHHHhC-CcEEeccCCCCC--CcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 666554 44566777888887 998864211100 0000125679999887 56799999999999998874
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=209.82 Aligned_cols=295 Identities=17% Similarity=0.176 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+.+++.+|++.|++ ..++++||++|+..++. + +++||+|+++++.|++....+....+..|++++.++.
T Consensus 52 pt~~~le~~la~l~g~~---~~~~~~sG~~ai~~~~~-l----l~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 123 (366)
T PRK08247 52 PTRGVLEQAIADLEGGD---QGFACSSGMAAIQLVMS-L----FRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT 123 (366)
T ss_pred chHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHH-H----hCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECC
Confidence 34567889999999997 34778888999998764 4 5799999999999998877677777788999999986
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. |++.+++++++++++|++++|+||+|...++++|+++|+++|+++|+|++|+.+.....+ +.+.|+++.|++|
T Consensus 124 ~-----d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~-~~g~di~i~S~sK 197 (366)
T PRK08247 124 A-----SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL-EEGADIVIHSATK 197 (366)
T ss_pred C-----CHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch-hcCCcEEEeecce
Confidence 4 889999999999999999999999999999999999999999999999999765542222 4578999999999
Q ss_pred CCCCC-c--eeEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 271 MCGPT-G--IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 271 ~~gp~-g--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
++++. + .|+++.+ +++.+.+....... ....+......+..+++. +....
T Consensus 198 ~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~---------------------g~~~s~~~a~l~~~~l~t-----l~~r~ 251 (366)
T PRK08247 198 YLGGHNDVLAGLVVAKGQELCERLAYYQNAA---------------------GAVLSPFDSWLLIRGMKT-----LALRM 251 (366)
T ss_pred eccCCCceeeeEEecChHHHHHHHHHHHHhc---------------------CCCCChHHHHHHHhccCc-----HHHHH
Confidence 77654 3 6888876 44444443222100 112222222222223332 33444
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC-hHHHHHHHhh---------hcCeEeccCCCCCh-
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH-PTDIATLLDQ---------QYGVATRSGHHCAQ- 415 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~---------~~gi~~~~g~~~~~- 415 (458)
++.+++++.+.+.|+++|++.....++. +++++|.+.+.. ...+.+.+.- ...+.+.|+.....
T Consensus 252 ~~~~~~a~~l~~~L~~~p~v~~v~~P~~-----gg~~sf~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~ 326 (366)
T PRK08247 252 RQHEENAKAIAAFLNEQPGVTDVLYPGR-----GGMLSFRLQDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHAD 326 (366)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEecCCc-----CcEEEEEECCHHHHHHHHHcCCcceEccCCCCCceEEECCccccccc
Confidence 5668899999999999988874333322 778889886310 1122222220 00222223321101
Q ss_pred --h-hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 416 --P-LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 416 --~-~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+ .....|. ++.+|+|++. ||++.+++.|+++++++
T Consensus 327 ~~~~~r~~~gi~~~~~R~svGl----E~~~dl~~dl~~al~~~ 365 (366)
T PRK08247 327 IPEEIRIANGVCNRLLRFSVGI----ENVEDLIADLKQAFKQV 365 (366)
T ss_pred CCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhhc
Confidence 1 1112343 5689999997 78888899888888753
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-24 Score=210.06 Aligned_cols=324 Identities=16% Similarity=0.170 Sum_probs=226.0
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.|..++.+.+++.+.+......+. +....+...++.+.++++++.+.+ ++++++|+++|+..++..+. .+.
T Consensus 50 lG~~~p~v~~a~~~~~~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~~-~v~~~~sgsea~~~al~~~~--~~~ 120 (413)
T cd00610 50 LGHNHPEVVEALKEQLAKLTHFSL------GFFYNEPAVELAELLLALTPEGLD-KVFFVNSGTEAVEAALKLAR--AYT 120 (413)
T ss_pred cCCCCHHHHHHHHHHHHhCcCccC------cccCCHHHHHHHHHHHHhCCCCCC-EEEEcCcHHHHHHHHHHHHH--HHc
Confidence 445788899999998865322111 001245667889999999986544 99999999999999998763 246
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHc---------CCeEEEEeCCCC------CCCCHHHHHHhhcC---CceEEEEecc
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKT---------GANLKFLNLNDD------ESPDLDKLKEMLSR---KTKLVVIHHI 217 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~---------g~~~~~v~~~~~------~~~d~~~l~~~l~~---~~~~v~~~~~ 217 (458)
++++|++.+++|++............ +.+++.+|.+.. ...|++.+++.+++ ++++++++..
T Consensus 121 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~ 200 (413)
T cd00610 121 GRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPI 200 (413)
T ss_pred CCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccc
Confidence 78999999999998765444332110 124566665521 23388899998876 5788899999
Q ss_pred cCcCccccc----HHHHHHHHHhcCcEEEEeccccCC-cc----cCCCCCCCCcEEEecccCCCCC-CceeEEEEecccc
Q 012718 218 SNMLASILP----IEEIVHWSHDVGAKVLVDACQSVP-HM----VVDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLL 287 (458)
Q Consensus 218 ~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g-~~----~~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~ 287 (458)
++++|...| +++|.++|+++|+++|+|++|+.. .. ..+.....+|++ +++|.+++ ..+|+++.+++++
T Consensus 201 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~g~~~g~~~~~~~~~ 278 (413)
T cd00610 201 QGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIV--TLGKGLGGGLPLGAVLGREEIM 278 (413)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeE--EEcccccCccccEEEEEcHHHH
Confidence 999999887 999999999999999999999732 11 112222346765 57797664 3389999998877
Q ss_pred ccC--CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 288 SAM--PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 288 ~~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+.+ ..... ....+.+...+.++.++++.+.+ +.+.++++++.+++.+.|+++..
T Consensus 279 ~~~~~~~~~~---------------------~~t~~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~~~ 334 (413)
T cd00610 279 DAFPAGPGLH---------------------GGTFGGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLRELAE 334 (413)
T ss_pred HhhccCCCCC---------------------CCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh
Confidence 765 11111 11224455566677777887765 45677888888888888776511
Q ss_pred E-EEeCCCCCCcCccccEEEEEeCC---------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 366 I-RIYGPKPSEHVQRAALCSFNVEN---------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 366 ~-~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
. .+.... ...++++++.++. .....+.+.|.++ ||.+.++. .+.+|++++..+
T Consensus 335 ~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~v~~~~------------~~~lR~~~~~~~ 397 (413)
T cd00610 335 KHPLVGDV----RGRGLMIGIELVKDRATKPPDKELAAKIIKAALER-GLLLRPSG------------GNVIRLLPPLII 397 (413)
T ss_pred hCCcEEEe----ecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHC-CeEEeecC------------CCEEEEECCCcC
Confidence 0 111111 1236788888764 2356788888888 99998763 468999999989
Q ss_pred CHHHHHHHHHHHHHHH
Q 012718 436 TKEDVDEFIHALNETV 451 (458)
Q Consensus 436 t~~di~~l~~~l~~~~ 451 (458)
+++|+++++++|++++
T Consensus 398 t~~~i~~~~~~l~~~l 413 (413)
T cd00610 398 TEEEIDEGLDALDEAL 413 (413)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-24 Score=205.79 Aligned_cols=336 Identities=15% Similarity=0.155 Sum_probs=216.6
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
..+.+.++..+.++++..+...+ ...+......+++++++|+++|.+ +.+++++|.++.. .++.++ +++||
T Consensus 13 ~~~~~~~~~~~a~~~~g~~~~~s--r~~yg~~~~~~~LE~~lA~~~g~e--~al~~~sG~~a~~-~~i~~l----~~~GD 83 (392)
T PLN03227 13 SSPTLRQTALESLSHYGCGSCGP--RGFYGTIDAHLELEQCMAEFLGTE--SAILYSDGASTTS-STVAAF----AKRGD 83 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCCccc--ccccCChHHHHHHHHHHHHHhCCC--cEEEecCcHHHHH-HHHHHh----CCCCC
Confidence 34567777777777654432211 111333457889999999999987 2566666655444 666666 78999
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc-----------CCceEEEEecccCcCcccccH
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-----------RKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-----------~~~~~v~~~~~~n~tG~~~~l 227 (458)
.|+++++.|.+....+ ...+++++.++..+ . .|++.+.+.+. +++++|+++.++|++|.+.|+
T Consensus 84 ~Vl~~~~~h~s~~~~~----~l~~~~~~~~~~~d-~-~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l 157 (392)
T PLN03227 84 LLVVDRGVNEALLVGV----SLSRANVRWFRHND-M-KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPL 157 (392)
T ss_pred EEEEeccccHHHHHHH----HHcCCeEEEeCCCC-H-HHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCH
Confidence 9999999999875443 33467777776541 1 13333333332 257899999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccC---------CCC-CCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVV---------DVQ-GLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGG 297 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~---------~~~-~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~ 297 (458)
++|.++|+++|+++|+|++|++|.... ++. ..++|+++.|++|.+|+. .|++++++++++.+.....+
T Consensus 158 ~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~-gg~v~~~~~~~~~~~~~~~~- 235 (392)
T PLN03227 158 KELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSV-GGMTVGSEEVVDHQRLSGSG- 235 (392)
T ss_pred HHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhcc-CcEEecCHHHHHHHHHhCcC-
Confidence 999999999999999999999664311 111 235699999999988866 46777787765544321111
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC---
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS--- 374 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~--- 374 (458)
..| .++.+.....+...++....+ .+...++++++.+++.+.|++. ++........
T Consensus 236 -----------------~~~-~~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~ 294 (392)
T PLN03227 236 -----------------YCF-SASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLV 294 (392)
T ss_pred -----------------ccc-cCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCccccccccccc
Confidence 012 122233233333344443332 3567788889999999998753 2221111000
Q ss_pred -CcCccccEEEEEeCCCC----------hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHH
Q 012718 375 -EHVQRAALCSFNVENIH----------PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEF 443 (458)
Q Consensus 375 -~~~~~~~~v~~~~~~~~----------~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l 443 (458)
.....++++.+.+.+.. ..++.+.+.++ |+.+.+...+.... ..+-.+..+|++++..+|++||+++
T Consensus 295 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gi~~~~~~~~~~~~-~~~~P~~~iR~~~~~~~t~eei~~~ 372 (392)
T PLN03227 295 ITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSE-GVAVVSTGGHVKKF-LQLVPPPCLRVVANASHTREDIDKL 372 (392)
T ss_pred cCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHC-CCEEEecccccCCc-CCCCCCceEEEEecCCCCHHHHHHH
Confidence 00122678888875311 13788888888 99886422111000 0112256899999999999999999
Q ss_pred HHHHHHHHHhh
Q 012718 444 IHALNETVSFF 454 (458)
Q Consensus 444 ~~~l~~~~~~~ 454 (458)
++.|+++++++
T Consensus 373 ~~~l~~~~~~~ 383 (392)
T PLN03227 373 LTVLGEAVEAI 383 (392)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=207.60 Aligned_cols=325 Identities=15% Similarity=0.157 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+.+++.++++.|.+ ..+++++|+.|+..++.++ +++||+|+++...|.++...+.....+.|++++.++
T Consensus 69 p~~~~Le~~lA~l~g~~---~av~~sSG~aAi~~al~al----l~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (436)
T PRK07812 69 PTQDVVEQRIAALEGGV---AALLLASGQAAETFAILNL----AGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE- 140 (436)
T ss_pred chHHHHHHHHHHHhCCC---eEEEEccHHHHHHHHHHHH----hCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-
Confidence 34557889999999987 5688889999999999887 789999999999998877666665667799888885
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
+. .|++.+++++++++++|++++++||+|.+.|+++|.++||++|+++|||++++.+.... ..++++|+++.|+||
T Consensus 141 d~---~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~-pl~~GaDivv~S~tK 216 (436)
T PRK07812 141 DP---DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIR-PLEHGADIVVHSATK 216 (436)
T ss_pred CC---CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC-chhcCCCEEEEeccc
Confidence 22 28999999999999999999999999999999999999999999999999999876633 336789999999999
Q ss_pred CCCCCc--eeEEEEeccccccCCCccccCcceEeeecC--CCCCCC------C---CCccCCCCCCHHHHHHHHHHHHHH
Q 012718 271 MCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLD--HSTFAD------P---PSRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 271 ~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~--~~~~~~------~---~~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
++|+.| +|.+++..+...........+..-...+.. ...+.. . ..+...+..+....+. .+.-+
T Consensus 217 ~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l---~~rgl 293 (436)
T PRK07812 217 YLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFL---IAQGL 293 (436)
T ss_pred ccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHH---HhcCc
Confidence 888776 566666433211111000000000000000 000000 0 0000011122211111 11112
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCC-----------cCccccEEEEEeCCCChHHHHHHHhhh--c
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSE-----------HVQRAALCSFNVENIHPTDIATLLDQQ--Y 403 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~~~~l~~~--~ 403 (458)
+ .++...++..+++..+.+.|++.|.++ +..|.-.. ....+++++|.+.+ ..++..+.+..- .
T Consensus 294 ~--tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~-~~~~~~~f~~~l~l~ 370 (436)
T PRK07812 294 E--TLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAG-GVEAGKAFVNALTLH 370 (436)
T ss_pred C--cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecC-CHHHHHHHHHhCCcc
Confidence 2 245566777888999999999998765 43331110 02356799999974 223333333322 1
Q ss_pred CeEeccCCCCC------hh--------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 404 GVATRSGHHCA------QP--------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 404 gi~~~~g~~~~------~~--------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
.+..+-|...+ .. .....|. ++.||+|++. ||++.+++.|.++++.+++.
T Consensus 371 ~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGl----Ed~~dli~dl~~Al~~~~~~ 435 (436)
T PRK07812 371 SHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGI----EGIDDILADLEAGFAAAKAF 435 (436)
T ss_pred eEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhhhcc
Confidence 22222232111 10 1113444 5789999998 88999999999999887753
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=206.62 Aligned_cols=336 Identities=18% Similarity=0.139 Sum_probs=239.0
Q ss_pred CCeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+.+++|..+.+ | ...+.+.++..+.++++.... +....-.+.....+++++.||+++|.+ ..++.++|..|+.
T Consensus 102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~--~gSrl~~G~~~~h~~LE~~LA~f~g~e---~all~sSGy~AN~ 176 (476)
T PLN02955 102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGP--KGSALICGYTTYHRLLESSLADLKKKE---DCLVCPTGFAANM 176 (476)
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCC--CCcCccccChHHHHHHHHHHHHHHCCC---cEEEECChHHHHH
Confidence 46677766543 3 355778888888888764432 222223345667788999999999987 6677888888888
Q ss_pred HHHHHcCC----------CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC---Cce
Q 012718 144 LVAYSWGL----------SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTK 210 (458)
Q Consensus 144 ~~~~~l~~----------~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~ 210 (458)
.++.++.. ....+++.|++....|.|.+.+......+.++++..++.+ |+++|+++++. +.+
T Consensus 177 ~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~~~~~ 251 (476)
T PLN02955 177 AAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCKMKRK 251 (476)
T ss_pred HHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCCCCce
Confidence 88877620 0024566788888888887766543212225778888766 89999988853 457
Q ss_pred EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccC---------CCCCCCCcEEEecccCCCCCCceeEEE
Q 012718 211 LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---------DVQGLDADFLVASSHKMCGPTGIGFLF 281 (458)
Q Consensus 211 ~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~~gp~g~G~l~ 281 (458)
+|+++.+.++.|.+.|+++|.++|++||+++++|++|+.|.... ++. .+.|++++|++|.+|.. .|++.
T Consensus 252 ~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~~-GGfi~ 329 (476)
T PLN02955 252 VVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGCH-GGFIA 329 (476)
T ss_pred EEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccchhcc-Cceee
Confidence 89999999999999999999999999999999999999766522 121 35799999999998866 48888
Q ss_pred EeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Q 012718 282 GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 282 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
+++++++.+.....+. .| .+..++....+..++++.+... +..++++.++.+++.+.+
T Consensus 330 gs~~~~~~l~~~~~~~------------------if-Stalpp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~~- 387 (476)
T PLN02955 330 CSKKWKQLIQSRGRSF------------------IF-STAIPVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKALS- 387 (476)
T ss_pred cHHHHHHHHHHhCCCC------------------ee-cccccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc-
Confidence 8887766554321100 11 2234444555666777776542 456778888888888742
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
|+.+ .++++.+.+.+ ....++.+.|.++ ||++.+..++..|.. ...+||+++..++++||
T Consensus 388 ---G~~~----------~sPI~pI~ig~~~~a~~~~~~L~~~-Gi~v~~i~yPtVP~g-----~~rLRi~lsA~Ht~edI 448 (476)
T PLN02955 388 ---GVDI----------SSPIISLVVGNQEKALKASRYLLKS-GFHVMAIRPPTVPPN-----SCRLRVTLSAAHTTEDV 448 (476)
T ss_pred ---CCCC----------CCCEEEEEeCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCC-----CceEEEeeCCCCCHHHH
Confidence 3321 16788777764 2345678999999 999987766655431 45799999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 012718 441 DEFIHALNETVSFF 454 (458)
Q Consensus 441 ~~l~~~l~~~~~~~ 454 (458)
+++++.|.++....
T Consensus 449 d~lv~~L~~~~~~~ 462 (476)
T PLN02955 449 KKLITALSSCLDFD 462 (476)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887643
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=220.10 Aligned_cols=358 Identities=16% Similarity=0.157 Sum_probs=234.3
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeC-ChhHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK-NATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~-g~t~a~~~ 144 (458)
..++.|.+ .+...++.+...+...-......|. .....+.+..+.+.++.+.+++++|.+ ++.+.. ++++|...
T Consensus 499 ~~~i~lGs-ct~~~~p~~~~~~~~~~~f~~~hP~-qp~e~~qG~l~~i~e~q~~l~eltG~d---~~sl~~~~ga~ge~a 573 (954)
T PRK05367 499 RSMIPLGS-CTMKLNAAAEMIPITWPEFANLHPF-APAEQAAGYRELIDQLEAWLAEITGYD---AVSLQPNAGAQGEYA 573 (954)
T ss_pred cceeeCCc-CCCcCCHHHHHHHHhCccccccCCC-ChHHHHHHHHHHHHHHHHHHHHHHCCC---CEEECccHHHHHHHH
Confidence 45677777 4445555555544433221111111 111223346788889999999999987 566655 55555544
Q ss_pred HHHHcCCCCCCCCC----EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEecc
Q 012718 145 VAYSWGLSNLKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHI 217 (458)
Q Consensus 145 ~~~~l~~~~~~~g~----~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~ 217 (458)
.+.+++....++|+ +|++++..|+++... +...|++++.++.+.+|.+|+++|++++++ ++.+|+++++
T Consensus 574 gL~a~r~~~~~~G~~~r~~vlis~~aH~snp~s----a~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~p 649 (954)
T PRK05367 574 GLLAIRAYHESRGEGHRDVCLIPSSAHGTNPAS----AVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYP 649 (954)
T ss_pred HHHHHHHHhhccCCCCCCEEEEEchhhhhhHHH----HHHCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcC
Confidence 44444321234444 699999999987433 566799999999998899999999999966 4678888888
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC-CCCCCCcEEEecccCCC------CCCceeEEEEeccccccC
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-VQGLDADFLVASSHKMC------GPTGIGFLFGKSDLLSAM 290 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~-~~~~~~d~~~~s~~K~~------gp~g~G~l~~~~~~~~~l 290 (458)
++..+...|+++|+++||++|+++++|+++..+...+. ..++|+|++++|+||+| |++|+|++++++.+
T Consensus 650 st~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l---- 725 (954)
T PRK05367 650 STHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHL---- 725 (954)
T ss_pred CCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccc----
Confidence 77644457899999999999999999999986655443 44788999999999964 34447899998644
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHHHhcCCCEE
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ---KIHAYEMELAKYLYENLLSIPNIR 367 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~---~~~~~~~~l~~~l~~~L~~~~~~~ 367 (458)
.+++.|+....... .....+ ..+.++.+...+..+..++...|.+ ++.++...+++|+.++|++...+.
T Consensus 726 ~p~lpg~~v~~~~~-------~~~~g~-v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~ 797 (954)
T PRK05367 726 APFLPGHPVQIAGG-------ETGIGA-VSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVL 797 (954)
T ss_pred cccCCCCccCcCCC-------CCCcCc-chhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 44444443211000 000011 1233333334444455555555544 555555599999999998753333
Q ss_pred EeCCCCCCcCccccEEEEE-eC---CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHH
Q 012718 368 IYGPKPSEHVQRAALCSFN-VE---NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEF 443 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~-~~---~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l 443 (458)
+.++... ..+..++.+. ++ +.+..++.++|.+. |+.....+ +..++.+||+++.+++.+|+|++
T Consensus 798 ~~~~~~~--~~~e~i~~~~~~~~~~g~~~~di~krL~d~-G~~~~t~~---------~pv~~~l~i~ptE~~s~~elDr~ 865 (954)
T PRK05367 798 YTGANGR--VAHECILDLRPLKESTGITVDDIAKRLIDY-GFHAPTMS---------FPVAGTLMVEPTESESKAELDRF 865 (954)
T ss_pred ccCCCCC--cccceEEEeecccccCCCCHHHHHHHHHHC-CCeEeecC---------CccCCEEEEEeeecCCHHHHHHH
Confidence 3222111 2233444442 23 35678999999876 99875422 12267899999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 012718 444 IHALNETVSFFNV 456 (458)
Q Consensus 444 ~~~l~~~~~~~~~ 456 (458)
+++|..+..++.+
T Consensus 866 ~~al~~i~~e~~~ 878 (954)
T PRK05367 866 CDAMIAIRAEIDE 878 (954)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888765
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-24 Score=209.66 Aligned_cols=355 Identities=16% Similarity=0.143 Sum_probs=237.1
Q ss_pred CCCCCcHHHHHHHHHHHHH-hccCCCCCcchhhhHHHHHHHH-HHHHHHHHcCCCCCCcEEE---eCChhHHHHHHHHHc
Q 012718 75 ATSQKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYEL-ARKKVAAFINASDSGEIVF---TKNATEAINLVAYSW 149 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~~v~~---t~g~t~a~~~~~~~l 149 (458)
+-...++.+.+++...+.. +........+..|....+.+|+ +++..+++++.+.. .+.+ ..+|+.|+..++.++
T Consensus 42 sen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~-~~~~nv~~~SG~~AN~av~~aL 120 (475)
T PLN03226 42 SENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPE-KWGVNVQPLSGSPANFAVYTAL 120 (475)
T ss_pred CCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcc-eeEEecCcCchHHHHHHHHHHh
Confidence 4446788899999888843 3222111222233334444443 66778888998864 4433 478899999999998
Q ss_pred CCCCCCCCCEEEEcCC---CCccchHHHHHH-HHHcCCeEE--EEeCC-CCCCCCHHHHHHhhcC-CceEEEEecccCcC
Q 012718 150 GLSNLKSGDEVILTVA---EHHSAIVPWQLV-AQKTGANLK--FLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNML 221 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~---~~~s~~~~~~~~-a~~~g~~~~--~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t 221 (458)
+++||+|+..+. +|.++....... ....+..+. .+..+ +++.+|++++++.+.. ++++|++. .+.+
T Consensus 121 ----~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~--~S~~ 194 (475)
T PLN03226 121 ----LQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG--ASAY 194 (475)
T ss_pred ----CCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe--cCcC
Confidence 799999998553 444321111100 001111112 33334 4588999999998864 67766652 2348
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCC---CCCcEEEecccCCC-CCCceeEEEEeccccccCCCccccC
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQG---LDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGG 297 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~---~~~d~~~~s~~K~~-gp~g~G~l~~~~~~~~~l~~~~~g~ 297 (458)
|...|+++|.++|+++|+++++|++|+.|..+.+... .++|++++|+||++ ||.| |+++++++.++.+.+...++
T Consensus 195 s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G-g~I~~~~~~~~~~~~g~~~~ 273 (475)
T PLN03226 195 PRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG-GMIFFRKGPKPPKGQGEGAV 273 (475)
T ss_pred CCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc-eEEEEchhhcccccCCCccH
Confidence 8999999999999999999999999999887554321 25999999999955 8998 88888887654432221100
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcC
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHV 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~ 377 (458)
. .+......... ..+ .|++++..++++.++++++...+.+++++++.+++++|.+.|.+. |+++......
T Consensus 274 ~----d~~~~i~~a~~-~~~-~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~-G~~l~~~~t~--- 343 (475)
T PLN03226 274 Y----DYEDKINFAVF-PGL-QGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK-GYKLVTGGTD--- 343 (475)
T ss_pred H----HHHHHhccccC-Ccc-CCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCC---
Confidence 0 00000000000 123 466889999999999999998889999999999999999999985 9998875321
Q ss_pred ccccEEEEEe--CCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe----eCCCCCHHHHHHHHHHHHHHH
Q 012718 378 QRAALCSFNV--ENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS----LHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 378 ~~~~~v~~~~--~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis----~~~~~t~~di~~l~~~l~~~~ 451 (458)
..++.+.+ .+++..++.+.|.+. ||.+..+..+.. ...+ .+..+|++ .+...+++|++++.+.|.+++
T Consensus 344 --~hi~lv~~~~~gi~~~~~~~~L~~~-~I~~nk~~~p~~--~~~~-~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~ 417 (475)
T PLN03226 344 --NHLVLWDLRPLGLTGSRVEKVLDLA-HITLNKNAVPGD--SSAL-VPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAV 417 (475)
T ss_pred --CCEEEEEccCCCCCHHHHHHHHHHC-CCEECCCCCCCC--cccC-CCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34555555 366778888999887 999875542211 0011 15678883 334468899999999999998
Q ss_pred Hh
Q 012718 452 SF 453 (458)
Q Consensus 452 ~~ 453 (458)
+.
T Consensus 418 ~~ 419 (475)
T PLN03226 418 TI 419 (475)
T ss_pred HH
Confidence 73
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=209.74 Aligned_cols=319 Identities=17% Similarity=0.178 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+..+.+++.++++.|++ ..+++++|+.|+.+++.++ +++||+|+++...|.++...+....++.|++++.++
T Consensus 68 ~pt~~~le~~la~l~g~~---~~v~fsSG~~Ai~~al~~l----l~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd 140 (437)
T PRK05613 68 NPTVEALENRIASLEGGV---HAVAFASGQAAETAAILNL----AGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE 140 (437)
T ss_pred ChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHh----cCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC
Confidence 455678889999999985 4555566668988888776 689999999999999887666677788899999997
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
++. |++.+++++++++++|+++++.||+|.+.|+++|+++||++|+++|+|++++.|.. .+..++|+|++++|+|
T Consensus 141 -~~~---d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~-~~p~~~GaDivv~S~~ 215 (437)
T PRK05613 141 -NPD---DPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-VRPLELGADVVVASLT 215 (437)
T ss_pred -CCC---CHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc-cChHHhCCCEEEeecc
Confidence 222 78999999999999999999999999999999999999999999999999998866 3444678999999999
Q ss_pred CCCCCCc--eeEEEE-ecccc-cc------CCCcc-ccCcceEeeecCCCCCCCC---------CCccCCCCCCHHHHHH
Q 012718 270 KMCGPTG--IGFLFG-KSDLL-SA------MPPFL-GGGEMISDVFLDHSTFADP---------PSRFEAGTPAIGEAIG 329 (458)
Q Consensus 270 K~~gp~g--~G~l~~-~~~~~-~~------l~~~~-~g~~~~~~~~~~~~~~~~~---------~~~~~~gt~~~~~~~~ 329 (458)
|++++.| +|.+++ +.+.. .. +.+.. .......... ...+... ..+-..++.+....+.
T Consensus 216 K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l 293 (437)
T PRK05613 216 KFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLK--YADLGAPAFGLKARAGLLRDTGATLSPFNAWV 293 (437)
T ss_pred ceecCCCcceeEEEEecCcccccccccccccCCCCCCCcccccccc--ccccchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9888765 344444 43311 00 00000 0000000000 0000000 0000012222222222
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc-----------CccccEEEEEeCCCChHHHHH
Q 012718 330 LGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSEH-----------VQRAALCSFNVENIHPTDIAT 397 (458)
Q Consensus 330 l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~~ 397 (458)
+...|+. +....++..+++..+.+.|+++|.+. +..|.-..+ ...+++++|.+.+ +.++..+
T Consensus 294 ~~rgl~T-----L~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~-~~~~~~~ 367 (437)
T PRK05613 294 TAQGLDT-----LSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKG-GKDEAWA 367 (437)
T ss_pred HHcccCc-----HHHHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecC-CHHHHHH
Confidence 2222221 34455667788999999999998764 333321110 1246699999974 3333333
Q ss_pred HHhhhcCeE---eccCCCCC------h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 398 LLDQQYGVA---TRSGHHCA------Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 398 ~l~~~~gi~---~~~g~~~~------~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.+..- .+. .+-|...+ . ......|. ++.||+|+++ ||++.+++.|+++++.
T Consensus 368 f~~~l-~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl----E~~~dLi~Dl~~Al~~ 436 (437)
T PRK05613 368 FIDAL-KLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVGI----EDIDDIIADLEGGFAA 436 (437)
T ss_pred HHHhC-CcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence 33322 332 22232111 1 11123444 5799999998 7888889888888864
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=203.04 Aligned_cols=278 Identities=19% Similarity=0.229 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcC---CCCccchHHHHHHHHHcCCeEE
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTV---AEHHSAIVPWQLVAQKTGANLK 186 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~---~~~~s~~~~~~~~a~~~g~~~~ 186 (458)
.+..+++++.+|+++|.+++ ++++++|+++|+..++.++ .++||.|+++. +.|.+ +...++..|+++.
T Consensus 53 ~~~~~~Le~~lA~~~g~~~e-~ilv~~gg~~a~~~~~~al----~~~gd~Vli~~~d~p~~~s----~~~~~~l~ga~~~ 123 (346)
T TIGR03576 53 AIFEEKVQELGREHLGGPEE-KILVFNRTSSAILATILAL----EPPGRKVVHYLPEKPAHPS----IPRSCKLAGAEYF 123 (346)
T ss_pred HHHHHHHHHHHHHHcCCCcc-eEEEECCHHHHHHHHHHHh----CCCCCEEEECCCCCCCchh----HHHHHHHcCCEEe
Confidence 46778899999999999765 8999999999999999998 78999999754 45553 3455666788764
Q ss_pred EEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccc---cHHHHHHHHHhcCcEEEEeccccCCcccC-C---CCCC
Q 012718 187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL---PIEEIVHWSHDVGAKVLVDACQSVPHMVV-D---VQGL 259 (458)
Q Consensus 187 ~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~---~l~~i~~l~~~~~~~vivD~a~~~g~~~~-~---~~~~ 259 (458)
.. . |++.++. .+++++|+++. .+++|.++ ++++|+++|+++|+++++|++|+.+.... + ....
T Consensus 124 ~~--~-----~l~~l~~--~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~ 193 (346)
T TIGR03576 124 ES--D-----ELSELKK--IDGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDL 193 (346)
T ss_pred cc--C-----CHHHHhh--CcCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHc
Confidence 32 1 4555433 24677887765 68899995 58899999999999999999999765321 1 1233
Q ss_pred CCcEEEecccCCC-CCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH
Q 012718 260 DADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS 338 (458)
Q Consensus 260 ~~d~~~~s~~K~~-gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 338 (458)
+.|++++|+||.+ |+. +||+++++++++.+...... +.. +.+...+.+..++|+..
T Consensus 194 ~~divv~s~SKalaG~r-~G~v~~~~~li~~l~~~~~~--------------------~~~-s~~~~~~~aa~~aL~~~- 250 (346)
T TIGR03576 194 GADLVVTSTDKLMDGPR-GGLLAGRKELVDKIKSVGEQ--------------------FGL-EAQAPLLAAVVRALEEF- 250 (346)
T ss_pred CCcEEEeccchhccccc-eEEEEeCHHHHHHHHHhhcC--------------------ccc-CccHHHHHHHHHHHhhc-
Confidence 5799999999955 555 79999999888776643321 111 23444555556666543
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHH-HHHhhhcCeEeccCCCCChhh
Q 012718 339 TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIA-TLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 339 ~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~gi~~~~g~~~~~~~ 417 (458)
..+..++.++++.+.+.+.++.+ .+...+ .+++++++++.+..+++ +.|.++ ||.++++..+.
T Consensus 251 --~~~~~~~~l~~r~~~~~~~l~~~---~~~~~~-------~~f~~~~~~~~~~~~~~~~ll~~~-gV~v~~~~~f~--- 314 (346)
T TIGR03576 251 --ELSRIRDAFKRKEEVYLRLFDKL---NVERTP-------TGFVIKGVEEEKLIEIGLDLLRNY-GIITITAVGMP--- 314 (346)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHhC---CCCcCC-------CeEEEEeCCCCCHHHHHHHHHHhC-CEEEeCCcccC---
Confidence 23566777778888888877643 222222 55888888653333444 455555 99999875321
Q ss_pred HhhcCCCCeEEEeeCCCCCHH---HHHHHHHHHHHHH
Q 012718 418 HRYLGVNASARASLHFYNTKE---DVDEFIHALNETV 451 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~---di~~l~~~l~~~~ 451 (458)
+.++++|||++ ...+ ++++++++|++.+
T Consensus 315 ----~~~~~vRis~~--~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 315 ----GASKTLRFDLA--AKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred ----CCCCeEEEEEe--cChHHhcCHHHHHHHHHhcc
Confidence 23679999999 3443 7999999998754
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=207.07 Aligned_cols=302 Identities=13% Similarity=0.118 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+..+.+++.++.+-+.+ ..+++++|++|+..++.++ +++||+|+++++.|++....+...+++.|++++.++
T Consensus 63 nPt~~~Le~~la~le~~~---~~v~~sSG~aAi~~~l~al----l~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd 135 (395)
T PRK05967 63 TPTTDALCKAIDALEGSA---GTILVPSGLAAVTVPFLGF----LSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYD 135 (395)
T ss_pred ChHHHHHHHHHHHHhCCC---CEEEECcHHHHHHHHHHHh----cCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeC
Confidence 344556778888887654 4566777899999999888 899999999999999876656667788999999986
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.. +.+.+++++++++++|++++|+||++.+.|+++|+++||++|+++++|++++.+.. ....++|+|+++.|.+
T Consensus 136 ~~-----~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~-~~pl~~GaDivv~S~t 209 (395)
T PRK05967 136 PE-----IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY-FRPLDFGVDISIHAAT 209 (395)
T ss_pred CC-----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee-cChhHcCCCEEEEecc
Confidence 53 45789999999999999999999999999999999999999999999999987654 3445689999999999
Q ss_pred CCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 270 KMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 270 K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
|++++.| .|++..+++.++.+..... ....+.+......+...++. +....
T Consensus 210 Ky~~Gh~d~~~G~v~~~~~~~~~l~~~~~---------------------~~G~~~~p~da~l~~rgl~T-----l~lR~ 263 (395)
T PRK05967 210 KYPSGHSDILLGTVSANEKCWPQLLEAHG---------------------TLGLCAGPDDTYQILRGLRT-----MGIRL 263 (395)
T ss_pred cccCCCCCeeEEEEEcCHHHHHHHHHHHH---------------------HcCCCCCHHHHHHHHcCccc-----HHHHH
Confidence 9877766 7877766654444431111 01123333332222222222 23344
Q ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCCCCC----------cCccccEEEEEeCCC---ChHHHHHHHhhhcCe---Eecc
Q 012718 347 AYEMELAKYLYENLLSIPNIR-IYGPKPSE----------HVQRAALCSFNVENI---HPTDIATLLDQQYGV---ATRS 409 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~----------~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi---~~~~ 409 (458)
++..+++..+.+.|++.|.++ +..|.-.. ....+++++|.+.+. ..+...+.+..- .+ .++-
T Consensus 264 ~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l-~l~~~~~sl 342 (395)
T PRK05967 264 EHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDAL-EIFGLGYSW 342 (395)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhC-CcceEccCC
Confidence 555677778888888887664 44332110 023467999999742 233333333322 33 2233
Q ss_pred CCCCChh--------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 410 GHHCAQP--------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 410 g~~~~~~--------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
|...+-- .....|. .+.+|||++. ||.+.+++.|.++++.+.
T Consensus 343 G~~~sLi~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~dLi~Dl~~Al~~~~ 393 (395)
T PRK05967 343 GGYESLALHVKLGDRTVAKAPYAGPVIRLQIGL----EDVPDLKADLERGFAAAS 393 (395)
T ss_pred CCcceeeeeCCCChhHhhhccCCCCeEEEEecc----CCHHHHHHHHHHHHHhhh
Confidence 3321110 0011122 4689999997 788888888888887653
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-24 Score=206.68 Aligned_cols=326 Identities=16% Similarity=0.195 Sum_probs=223.7
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+..... ... ..+...++.+.|+++.+.+ .++|++||+
T Consensus 38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~-~~~------~~~~~~~l~~~l~~~~~~~---~~~~~~SGs 107 (396)
T PRK04073 38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTS-RAF------HSDQLGPWYEKVAKLTGKD---MVLPMNTGA 107 (396)
T ss_pred CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccc-ccc------CCHHHHHHHHHHHhcCCCC---eEEEcCChH
Confidence 344566652 244577899999999887643211 111 1233456778888887643 899999999
Q ss_pred HHHHHHHHHcCCC-----CC-CCCCEEEEcCCCCccchHHHHHHHHHcCC---------eEEEEeCCCCCCCCHHHHHHh
Q 012718 140 EAINLVAYSWGLS-----NL-KSGDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDESPDLDKLKEM 204 (458)
Q Consensus 140 ~a~~~~~~~l~~~-----~~-~~g~~vl~~~~~~~s~~~~~~~~a~~~g~---------~~~~v~~~~~~~~d~~~l~~~ 204 (458)
+|++.++...+.. .. ..+++|+..+.+||+.......+....+. .+..++.. |++.+++.
T Consensus 108 eA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~ 182 (396)
T PRK04073 108 EAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAA 182 (396)
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHh
Confidence 9999999876321 01 23478999999999876443332211000 12233322 78999999
Q ss_pred hcCCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCCC
Q 012718 205 LSRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPT 275 (458)
Q Consensus 205 l~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp~ 275 (458)
+++++++|+++.++|++|.+.| +++|.++|+++|+++|+|++|. +|.. ..+.....+|+++ ++|.+|.+
T Consensus 183 i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~--~sK~lg~g 260 (396)
T PRK04073 183 ITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYI--LGKALGGG 260 (396)
T ss_pred cccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEE--ecccccCC
Confidence 9889999999999999999987 7899999999999999999998 4321 1233344578776 67977765
Q ss_pred c--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012718 276 G--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353 (458)
Q Consensus 276 g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~ 353 (458)
| +|++++++++++.+.....+ . ..+.+....+++.++|+.+.+. .+.++.+++.
T Consensus 261 g~~ig~~~~~~~i~~~~~~~~~~--------------------~-t~~~~~~~~aaa~aaL~~~~~~---~l~~~~~~~~ 316 (396)
T PRK04073 261 VFPISCVAANRDILGVFTPGSHG--------------------S-TFGGNPLACAVSIAALEVLEEE---KLPERSLELG 316 (396)
T ss_pred CCcceEEEEcHHHHhhhcCCCCC--------------------C-CCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 4 89999999887766432110 1 1124555566666778777553 4557777889
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF 433 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~ 433 (458)
+++.+.|+++ +....... ...+.++.+.++. +..++.+.|.++ ||.+.+.. ++++|+++++
T Consensus 317 ~~l~~~L~~l-~~~~i~~~----~~~g~~~~~~~~~-~~~~~~~~l~~~-Gv~~~~~~------------~~~iRi~p~l 377 (396)
T PRK04073 317 EYFKEQLKEI-DNPMIKEV----RGRGLFIGVELNE-PARPYCEALKEE-GLLCKETH------------ETVIRFAPPL 377 (396)
T ss_pred HHHHHHHHhh-cCCcccce----ecceEEEEEEecc-hHHHHHHHHHHC-CeEEecCC------------CCEEEEECCc
Confidence 9999998876 22111111 1236678887763 467888999888 99986421 4689999998
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 012718 434 YNTKEDVDEFIHALNETV 451 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~ 451 (458)
.++++|+++++++|++++
T Consensus 378 ~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 378 VITKEELDWAFEKIKAVL 395 (396)
T ss_pred ccCHHHHHHHHHHHHHHh
Confidence 899999999999999875
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-24 Score=205.21 Aligned_cols=359 Identities=15% Similarity=0.106 Sum_probs=248.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCC-cchhhhHHHHHH-HHHHHHHHHHcCCCCCCc-E-EEeCChhHHHHHHHHHcC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRG-IHFLSAKATDEY-ELARKKVAAFINASDSGE-I-VFTKNATEAINLVAYSWG 150 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~la~~~g~~~~~~-v-~~t~g~t~a~~~~~~~l~ 150 (458)
+-...++.+++++...+...+..-..+ .++.|......+ .-..++..++||++..+. + |-..||+.|+..++.++
T Consensus 156 SEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~AL- 234 (586)
T PLN02271 156 SENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGL- 234 (586)
T ss_pred ccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHh-
Confidence 444677888888877776533322112 222333334444 447788889999885311 2 44558899999999998
Q ss_pred CCCCCCCCEEEEcCCCCccchHHHH-----HHHHHcCCeEEEEe--CC-CCCCCCHHHHHH-hhcCCceEEEEecccCcC
Q 012718 151 LSNLKSGDEVILTVAEHHSAIVPWQ-----LVAQKTGANLKFLN--LN-DDESPDLDKLKE-MLSRKTKLVVIHHISNML 221 (458)
Q Consensus 151 ~~~~~~g~~vl~~~~~~~s~~~~~~-----~~a~~~g~~~~~v~--~~-~~~~~d~~~l~~-~l~~~~~~v~~~~~~n~t 221 (458)
++|||+|+..+..|.++..... ..+...|..+..++ ++ +++.+|.+++++ +...++++|++.+..++
T Consensus 235 ---l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp- 310 (586)
T PLN02271 235 ---LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP- 310 (586)
T ss_pred ---cCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc-
Confidence 8999999999988887754321 22334465555555 54 458999999998 56679999999888888
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcccCCCC---CCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccC
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ---GLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGG 297 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~---~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~ 297 (458)
..+|+++|.++|+++|+++++|.+|..|.++.+.. -.++|++++|+|| ++||.| |+++++++....+.....+|
T Consensus 311 -r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~~~~~g~~gs~ 388 (586)
T PLN02271 311 -REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPKLRKQGMLLSH 388 (586)
T ss_pred -CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEecccccccccCCcccc
Confidence 77899999999999999999999999998855421 2258999999999 568998 88888877654444444444
Q ss_pred cceEeee--cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Q 012718 298 EMISDVF--LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE 375 (458)
Q Consensus 298 ~~~~~~~--~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~ 375 (458)
+.....+ .........| +++.|+.+.. +++++.++++.....+..+.+.+.++++.|.+.|.+. |++++...-.
T Consensus 389 s~~~~~~d~~~kI~~aVfP-glqgGphn~~-IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggTd- 464 (586)
T PLN02271 389 GDDNSHYDFEEKINFAVFP-SLQGGPHNNH-IAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGTD- 464 (586)
T ss_pred ccccccHHHHHHhhcccCC-ccccChhHHH-HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCCC-
Confidence 3221100 0001111122 5555555554 9999999998877667899999999999999999887 9998764321
Q ss_pred cCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC----CHHHHHHHHHHHHH
Q 012718 376 HVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN----TKEDVDEFIHALNE 449 (458)
Q Consensus 376 ~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~----t~~di~~l~~~l~~ 449 (458)
...+.+.+. +.+...+.+.|.+. ||.+.-...+.. ..--.++.+||+....+ .++|++++.+.|.+
T Consensus 465 ----nHlvLvDl~~~g~~G~~ae~~Le~~-~I~~Nkn~iP~d---~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~ 536 (586)
T PLN02271 465 ----NHLLLWDLTTLGLTGKNYEKVCEMC-HITLNKTAIFGD---NGTISPGGVRIGTPAMTSRGCLESDFETIADFLLR 536 (586)
T ss_pred ----cceeeecCcccCCCHHHHHHHHHHc-CeEeccccCCCC---CCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHH
Confidence 346667665 44677777777777 998853221111 11112678999865433 66899999999988
Q ss_pred HHH
Q 012718 450 TVS 452 (458)
Q Consensus 450 ~~~ 452 (458)
+++
T Consensus 537 ~~~ 539 (586)
T PLN02271 537 AAQ 539 (586)
T ss_pred HHh
Confidence 876
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=205.78 Aligned_cols=316 Identities=15% Similarity=0.195 Sum_probs=219.5
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC-----
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS----- 152 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~----- 152 (458)
.-.+.+.+++.+.+....... . .. ..+...++.+.++++++.+ .+++++||++|+..++..++..
T Consensus 57 h~~~~i~~a~~~~~~~~~~~~--~-~~----~~~~~~~l~~~l~~~~~~~---~~~~~~SGs~A~e~al~~a~~~~~~~~ 126 (401)
T PRK00854 57 HCHPKILAAMVEQAGRLTLTS--R-AF----RNDQLAPLYEELAALTGSH---KVLPMNSGAEAVETAIKAVRKWGYEVK 126 (401)
T ss_pred CCCHHHHHHHHHHHhhccccc--c-cc----CCHHHHHHHHHHHhhCCCC---EEEEeCCcHHHHHHHHHHHHHHHHhcc
Confidence 347889999999887642211 1 11 1245567888999998864 8999999999999999887321
Q ss_pred CCCC-CCEEEEcCCCCccchHHHHHHHH---------HcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 153 NLKS-GDEVILTVAEHHSAIVPWQLVAQ---------KTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 153 ~~~~-g~~vl~~~~~~~s~~~~~~~~a~---------~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
...+ +++|++....||+.......+.. .....+..++. .|++.+++.+.+++++|++++++|++|
T Consensus 127 g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~~~~~aii~e~~~~~~G 201 (401)
T PRK00854 127 GVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAITPNTVAFLVEPIQGEAG 201 (401)
T ss_pred CCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCCeEEEEEccccCCCC
Confidence 1122 36899999889876544332210 00112333332 288999999988999999999999999
Q ss_pred cccc----HHHHHHHHHhcCcEEEEecccc-CCcccC----CCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCC
Q 012718 223 SILP----IEEIVHWSHDVGAKVLVDACQS-VPHMVV----DVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMP 291 (458)
Q Consensus 223 ~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~~----~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~ 291 (458)
.+.| +++|.++|++||+++|+|++|+ +|..+. ......+|+++. +|.++... +|+++.++++++.+.
T Consensus 202 ~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~--~K~l~gg~~~ig~v~~~~~~~~~l~ 279 (401)
T PRK00854 202 VIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLI--GKALSGGFYPVSAVLSNSEVLGVLK 279 (401)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEe--cccccCCccCeEEEEEcHHHHhccc
Confidence 9998 9999999999999999999998 554321 122335788885 59665433 899999998877665
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
....+ ... ..+.....+..++|+.+.+ +.+.++.+++.+++.+.|+++ +......
T Consensus 280 ~~~~~--------------------~t~-~~~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 334 (401)
T PRK00854 280 PGQHG--------------------STF-GGNPLACAVARAALKVLTE---EGMIENAAEMGAYFLEGLRSI-RSNIVRE 334 (401)
T ss_pred CCCCC--------------------CCC-CcCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHhh-ccCceEE
Confidence 32111 111 2355566677777777654 335678888889999999876 2221111
Q ss_pred CCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
. ...+.++.+.+.+ .+..++.+.|.++ ||.+.+.. .+++|++++..++++||++++++|++
T Consensus 335 ~----~g~g~~~~i~~~~~~~~~~~~~~~L~~~-GV~v~~~~------------~~~lR~~p~~~~t~e~i~~~i~~l~~ 397 (401)
T PRK00854 335 V----RGRGLMLAVELEPEAGGARQYCEALKER-GLLAKDTH------------DHTIRLAPPLVITREQVDWALEQIAK 397 (401)
T ss_pred E----eccceEEEEEEecCchhHHHHHHHHHHC-CeEEecCC------------CCEEEEeCCcccCHHHHHHHHHHHHH
Confidence 1 1225566665532 3467899999988 99986421 46899999988999999999999998
Q ss_pred HHH
Q 012718 450 TVS 452 (458)
Q Consensus 450 ~~~ 452 (458)
++.
T Consensus 398 ~l~ 400 (401)
T PRK00854 398 VLA 400 (401)
T ss_pred Hhh
Confidence 874
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-24 Score=204.99 Aligned_cols=317 Identities=16% Similarity=0.184 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
+..+.+++.+|++.|.. ..+.++||+.|+.+++.++ +++||+|+++.+.|.++...+.....+.|++++.++.
T Consensus 61 Ptv~~lE~~la~leg~~---~av~~~SG~aAi~~al~al----l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 61 PTLAAFEQKLAELEGGV---GAVATASGQAAIMLAVLNI----CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred cHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHh----cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 34567789999999987 6788999999999999887 7899999999999998876666666788999999964
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
.+|++.++++|+++|++|+++++.||++.+.|+++|+++|+++|+++++|++++.+.. ...-+.|+|+++.|.+|
T Consensus 134 ----~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~-~~pl~~GADIvv~S~TK 208 (432)
T PRK06702 134 ----NLTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYL-CQAFEHGANIIVHSTTK 208 (432)
T ss_pred ----CCCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhh-CChhhcCCCEEEEcccc
Confidence 3588999999999999999999999999999999999999999999999999976543 33447789999999999
Q ss_pred CCCCCc---eeEEEEeccc--cc----c-CC---CccccCcceEeeecCCCC-----CCCCCCccCCCCCCHHHHHHHHH
Q 012718 271 MCGPTG---IGFLFGKSDL--LS----A-MP---PFLGGGEMISDVFLDHST-----FADPPSRFEAGTPAIGEAIGLGA 332 (458)
Q Consensus 271 ~~gp~g---~G~l~~~~~~--~~----~-l~---~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~gt~~~~~~~~l~~ 332 (458)
+.+..+ .|+++..... .. . +. .+.. ..... .... .. .......+ ..+.+......+..
T Consensus 209 y~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~-g~~~sp~~a~l~~r 284 (432)
T PRK06702 209 YIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHG-VSYVQ-NFGA-AAYIVKARVQLLRDY-GNCMSPFNAYISNI 284 (432)
T ss_pred ccCCCcceeceEEEeCCCcccccccccccccccccccc-cchhh-ccch-hhHHHHHHHHHHHHc-cCCCCHHHHHHHHh
Confidence 776555 4555433321 00 0 00 0000 00000 0000 00 00000011 12333333332222
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC-Cc-----------CccccEEEEEeCCCChHHHHHHHh
Q 012718 333 AIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS-EH-----------VQRAALCSFNVENIHPTDIATLLD 400 (458)
Q Consensus 333 al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~-~~-----------~~~~~~v~~~~~~~~~~~~~~~l~ 400 (458)
+|+ . ++...++..+++..+.+.|++.|.++.+..+.. .+ ...+++++|.+.+ +.++..+.+.
T Consensus 285 gL~---T--l~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~-~~~~~~~f~~ 358 (432)
T PRK06702 285 GLE---T--LHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKG-GLEAAKEFIA 358 (432)
T ss_pred ccC---c--HHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC-CHHHHHHHHH
Confidence 232 2 455666667999999999999987764433221 10 2346799999974 3333333333
Q ss_pred hh--cCeEeccCCCCC------hhhH--------hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 401 QQ--YGVATRSGHHCA------QPLH--------RYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 401 ~~--~gi~~~~g~~~~------~~~~--------~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.- +.+.++-|..-+ ...+ ...|. ++.+|+|++. ||++.+++.|+++++-
T Consensus 359 ~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~Al~~ 424 (432)
T PRK06702 359 NVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGI----EDVSDIIADLEAALVG 424 (432)
T ss_pred hCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhc
Confidence 22 122233332111 1011 12343 5799999998 8889999999988863
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=210.09 Aligned_cols=301 Identities=15% Similarity=0.130 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.++++.|.+ ++++++|+++|+.+++.++ +++||+|+++++.|.+....+...+...|++++.++
T Consensus 64 ~pt~~~Le~~lA~l~g~~---~~l~~~sgt~Ai~~~l~al----~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd 136 (394)
T PRK07050 64 TPTSLALAQRLAEIEGGR---HALLQPSGLAAISLVYFGL----VKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYD 136 (394)
T ss_pred CHHHHHHHHHHHHHhCCC---eEEEeccHHHHHHHHHHHH----hCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEEC
Confidence 344578889999999975 8999999999999999988 789999999999999877666667788899999887
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.. +.+++++.+++++++|++++|+||+|...++++|+++|+++|+++++|++|+.|.. ....+.+.|+++.|++
T Consensus 137 ~~-----~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~-~~~l~~GaDi~v~S~t 210 (394)
T PRK07050 137 PL-----IGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLA-FKPFEHGVDISVQALT 210 (394)
T ss_pred CC-----CHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccc-cCHHHcCCeEEEEECC
Confidence 53 45788999999999999999999999999999999999999999999999998875 3334567899999999
Q ss_pred CCCCCCc---eeEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMCGPTG---IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~gp~g---~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|+++..+ .|+++.+ +++++++..... ...++.+.... ..++..+.. +...
T Consensus 211 K~~~g~~~~~gG~v~~~~~~~~~~~~~~~~---------------------~~G~~~~~~~a---~l~lr~l~t--l~~R 264 (394)
T PRK07050 211 KYQSGGSDVLMGATITADAELHAKLKLARM---------------------RLGIGVSADDC---SLVLRGLPS--LQVR 264 (394)
T ss_pred ceecCCCCeeEEEEEECCHHHHHHHHHHHH---------------------hcCCCCCHHHH---HHHHcCCCc--HHHH
Confidence 9665433 6766664 455554442211 00112222111 122222222 2334
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEeC-CCCCC----------cCccccEEEEEeCCC----ChHHHHHHHhhhcCeEeccC
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIYG-PKPSE----------HVQRAALCSFNVENI----HPTDIATLLDQQYGVATRSG 410 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~~-~~~~~----------~~~~~~~v~~~~~~~----~~~~~~~~l~~~~gi~~~~g 410 (458)
.++..+++.++.+.|++.|.+.... |.-.. ....++++.|.+.+. ...++.+.|+.. ++.++-|
T Consensus 265 l~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~-~~~~s~G 343 (394)
T PRK07050 265 LAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELF-AIGWSWG 343 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCC-eeccccC
Confidence 4555566778888888877655322 21100 023456888988642 244566666654 6655555
Q ss_pred CCCCh--h------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 411 HHCAQ--P------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 411 ~~~~~--~------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
...+- + .+..++. .+.||+|++. ||++.+++.|.++++..
T Consensus 344 ~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl----E~~~dl~~dl~~al~~~ 392 (394)
T PRK07050 344 GACSLAMPYDVASMRTAKWPHRGTLVRLYIGL----EDEADLIADLEQALEAA 392 (394)
T ss_pred CccceEeeCcccccchhhcCCCCCEEEEEeCc----CCHHHHHHHHHHHHHHh
Confidence 43221 0 0111111 4789999998 78888888888877653
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=205.55 Aligned_cols=162 Identities=19% Similarity=0.300 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+++++.+|++.|.+ ..++++||+.|+..++.++ +++||+|+++.+.|++....+...++..|++++.++.
T Consensus 57 p~~~~le~~lA~l~g~~---~~v~~~sG~~Ai~~al~~l----~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 57 PTTDVLEQRIAALEGGV---AALAVASGQAAITYAILNL----AQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred hhHHHHHHHHHHHhCCC---eEEEEccHHHHHHHHHHHH----hCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 34568899999999975 6789999999999999887 6899999999999998777777778888999999985
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
+ |++++++.+++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|++|
T Consensus 130 ~-----d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~-~~~l~~g~Divv~S~sK 203 (418)
T TIGR01326 130 D-----DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYL-CRPIDHGADIVVHSATK 203 (418)
T ss_pred C-----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhc-CCchhcCCeEEEECccc
Confidence 4 88999999999999999999999999999999999999999999999999987643 22234679999999999
Q ss_pred CCCCCc--eeEEEEecc
Q 012718 271 MCGPTG--IGFLFGKSD 285 (458)
Q Consensus 271 ~~gp~g--~G~l~~~~~ 285 (458)
++|+.| +|+++++++
T Consensus 204 ~l~g~G~~lGg~v~~~~ 220 (418)
T TIGR01326 204 YIGGHGTAIGGVIVDGG 220 (418)
T ss_pred cccCCccceEEEEEecc
Confidence 888777 788888653
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=204.20 Aligned_cols=318 Identities=16% Similarity=0.170 Sum_probs=211.1
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.|.-.+.+.+++.+.+.+..... ... ..+...++.+.|++..+.+ ++++++||++|+..++++++.....
T Consensus 45 lGh~~p~v~~a~~~~~~~~~~~~---~~~----~~~~~~~la~~l~~~~~~~---~v~~~~sGseA~~~al~~ar~~~~~ 114 (389)
T PRK01278 45 LGHAHPHLVEALKEQAEKLWHVS---NLY----RIPEQERLAERLVENSFAD---KVFFTNSGAEAVECAIKTARRYHYG 114 (389)
T ss_pred CCCCCHHHHHHHHHHHHhcCccc---ccc----CChHHHHHHHHHHhhCCCC---EEEEcCCcHHHHHHHHHHHHHHHHh
Confidence 45677899999999887532211 100 1233446777788876433 8999999999999998876322234
Q ss_pred CCC----EEEEcCCCCccchHHHHHHHHHcCCeEEEE----eCCCCC----CCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 156 SGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFL----NLNDDE----SPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 156 ~g~----~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v----~~~~~~----~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
+|+ +|++.++.||+....+... +...... +..++. ..|++.+++.+++++++|+++.+++++|.
T Consensus 115 ~G~~~r~~vi~~~~~yhg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~ 190 (389)
T PRK01278 115 KGHPERYRIITFEGAFHGRTLATIAA----GGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIEPIQGEGGI 190 (389)
T ss_pred cCCCCCCEEEEECCCcCCCcHHHHhc----cCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEecccCCCCC
Confidence 454 8999999999876544332 2111111 111111 14899999999889999999999999994
Q ss_pred cc-c---HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC-CceeEEEEeccccccCCCc
Q 012718 224 IL-P---IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 224 ~~-~---l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~ 293 (458)
.. | +++|.++|++||+++|+|++|. +|.. ........+|+ .+++|.+++ ..+|++++++++++.+...
T Consensus 191 ~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi--~t~sK~l~~G~~ig~~~~~~~~~~~~~~~ 268 (389)
T PRK01278 191 RPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDI--MAVAKGIGGGFPLGACLATEEAAKGMTPG 268 (389)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCE--EEEehhccCCcceEEEEEcHHHHhccCCC
Confidence 44 4 8899999999999999999998 3221 11122334675 468997663 2299999998877666432
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc----CCCEEEe
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS----IPNIRIY 369 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~----~~~~~~~ 369 (458)
..+ . ..+.+.....++.++++.+.+. ...++.+++.+++.+.|+. .+++ .
T Consensus 269 ~~~--------------------~-t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~--~ 322 (389)
T PRK01278 269 THG--------------------S-TYGGNPLAMAVGNAVLDVILAP---GFLDNVQRMGLYLKQKLEGLVDRFPDV--I 322 (389)
T ss_pred CCC--------------------C-CCCccHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHhhCCCc--e
Confidence 211 1 1235556666666777777542 3344455555555555543 3221 1
Q ss_pred CCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
... ...+.++++.+.. +..++.+.|.++ ||.+.++. .+++|++++...+++|+++++++|++
T Consensus 323 ~~v----~g~G~~~~i~~~~-~~~~~~~~l~~~-GV~~~p~~------------~~~lR~~p~~~~~~~~i~~~l~~l~~ 384 (389)
T PRK01278 323 EEV----RGKGLLLGLKCVV-PNRDLVQALRDE-GLLTVGAG------------DNVVRLLPPLIITEEEIDEALERLER 384 (389)
T ss_pred eeE----ecccEEEEEEEec-CHHHHHHHHHHC-CeEEeecC------------CCEEEEeCCcccCHHHHHHHHHHHHH
Confidence 111 1225567776643 567899999998 99988763 57899999888899999999999999
Q ss_pred HHHh
Q 012718 450 TVSF 453 (458)
Q Consensus 450 ~~~~ 453 (458)
++++
T Consensus 385 ~l~~ 388 (389)
T PRK01278 385 AAES 388 (389)
T ss_pred HHHh
Confidence 8865
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=205.33 Aligned_cols=319 Identities=18% Similarity=0.201 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
....+++.++++.|.+ ..+++++|+.|+.+++.++ +++||+|+++.+.|+++...+...+...|++++.++..
T Consensus 64 ~~~~le~~lA~l~g~~---~al~~~SG~~Ai~~al~al----l~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 136 (427)
T PRK05994 64 TNAVLEERVAALEGGT---AALAVASGHAAQFLVFHTL----LQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD 136 (427)
T ss_pred cHHHHHHHHHHHhCCC---cEEEEcCHHHHHHHHHHHH----hCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC
Confidence 4557889999999987 5788899999999999887 78999999999999988777777778889999999864
Q ss_pred CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC
Q 012718 192 DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM 271 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 271 (458)
|++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+... ..-++++|+++.|++|+
T Consensus 137 -----d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~-~pl~~gaDivv~S~tK~ 210 (427)
T PRK05994 137 -----DPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLI-RPIEHGADIVVHSLTKF 210 (427)
T ss_pred -----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccC-CccccCCcEEEEcCccc
Confidence 889999999999999999999999999999999999999999999999999977653 33357899999999998
Q ss_pred CCCCc--eeEEEEeccccc--cCC--Cccc----cC-cc-eEeeecCC-CCC-CC-CCCccCCCCCCHHHHHHHHHHHHH
Q 012718 272 CGPTG--IGFLFGKSDLLS--AMP--PFLG----GG-EM-ISDVFLDH-STF-AD-PPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 272 ~gp~g--~G~l~~~~~~~~--~l~--~~~~----g~-~~-~~~~~~~~-~~~-~~-~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
+|++| +|.+++...... ..+ +.+. +. +. ........ ... .. ...+....+.+....+. .+..
T Consensus 211 lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l---~~~~ 287 (427)
T PRK05994 211 LGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFL---ILTG 287 (427)
T ss_pred cCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHH---HHcC
Confidence 77655 555555422111 000 0000 00 00 00000000 000 00 00011111222222222 2222
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCC-----------cCccccEEEEEeCCCChHHHHHHHhhh--
Q 012718 337 LSTIGMQKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSE-----------HVQRAALCSFNVENIHPTDIATLLDQQ-- 402 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~~~~l~~~-- 402 (458)
++. ++...++..+++..+.+.|++.|.++ +..|.-.. +...+++++|.+.+ +.++..+.+..-
T Consensus 288 l~t--L~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~-~~~~~~~~~~~l~l 364 (427)
T PRK05994 288 IET--LPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKG-GYEAGVKLVSSLKL 364 (427)
T ss_pred ccc--HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecC-CHHHHHHHHHhCCc
Confidence 222 45566777888999999999988765 33332111 12456799999974 333333333322
Q ss_pred cCeEeccCCCCCh--------------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 403 YGVATRSGHHCAQ--------------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 403 ~gi~~~~g~~~~~--------------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+.+.++-|...+- ......|. ++.||+|++. ||.+.+++.|++++++
T Consensus 365 ~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----E~~~dli~dl~~Al~~ 426 (427)
T PRK05994 365 FSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGI----EDVDDIIADLEQALAK 426 (427)
T ss_pred ceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEEecc----CCHHHHHHHHHHHHhh
Confidence 1223333332110 01112343 5689999998 7888888888888764
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=205.12 Aligned_cols=297 Identities=18% Similarity=0.201 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
.....+++.++++.|.+ ..+++++|+.|+..++. + +++||+|+++++.|++....+...+...|++++.++.
T Consensus 50 p~~~~Le~~la~l~g~~---~al~~~SG~~Al~~~l~-~----l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 50 PTRFALEELIADLEGGV---KGFAFASGLAGIHAVFS-L----FQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred hhHHHHHHHHHHHhCCC---CEEEECCHHHHHHHHHH-H----cCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 34567889999999976 44666777889987764 4 5799999999999998887777788888999998876
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. |++++++.+++++++|++++++||+|.+.|+++|.++||++|+++|+|++++.+.....+ .+++|++++|++|
T Consensus 122 ~-----d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~-~~gaDivv~S~tK 195 (380)
T PRK06176 122 S-----DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPL-LLGADIVVHSGTK 195 (380)
T ss_pred C-----CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCcc-ccCCCEEEecCce
Confidence 4 899999999999999999999999999999999999999999999999999976543223 5689999999999
Q ss_pred CCCCCc---eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 271 MCGPTG---IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 271 ~~gp~g---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
++++++ .|+++.++ ++.+.+....... ..+.+......+...++ .+....
T Consensus 196 ~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~---------------------G~~~~~~~~~l~~~gl~-----tl~~R~ 249 (380)
T PRK06176 196 YLGGHSDVVAGLVTTNNEALAQEIAFFQNAI---------------------GGVLGPQDSWLLQRGIK-----TLGLRM 249 (380)
T ss_pred eccCCccceeeEEEecHHHHHHHHHHHHHHh---------------------cCCCCHHHHHHHHhccC-----cHHHHH
Confidence 776443 67777754 3333333211100 01111111111111111 123344
Q ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCCCC----------CcCccccEEEEEeCCCChHHHHHHHhhhcCe---EeccCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIR-IYGPKPS----------EHVQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSGHH 412 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~-~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g~~ 412 (458)
++..+.+..+.+.|++.|.+. ++.|.-. .....+++++|.+.+ .++..+.+..- .+ ..+-|..
T Consensus 250 ~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~--~~~~~~f~~~l-~~~~~~~s~G~~ 326 (380)
T PRK06176 250 EAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKN--DSEAVAFVESL-KLFILGESLGGV 326 (380)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC--HHHHHHHHHcC-CcceEccCCCCC
Confidence 555567778888888877665 3322211 012456799999974 33444443322 33 2222321
Q ss_pred CC------h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 413 CA------Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 413 ~~------~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+ . ......|. ++.+|+|++. ||++.+++.|+++++++
T Consensus 327 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~Al~~~ 379 (380)
T PRK06176 327 ESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGI----EHEQDLLEDLEQAFAKI 379 (380)
T ss_pred CceeeCCcccccccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHhhc
Confidence 11 0 11123444 5799999997 78889999998888753
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=216.96 Aligned_cols=322 Identities=17% Similarity=0.151 Sum_probs=228.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCcEEEeC-ChhHHHHHHHHHcCCCCC----CCCCEEEEcCCCCccchHHHHHHHHH
Q 012718 106 SAKATDEYELARKKVAAFINASDSGEIVFTK-NATEAINLVAYSWGLSNL----KSGDEVILTVAEHHSAIVPWQLVAQK 180 (458)
Q Consensus 106 ~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~-g~t~a~~~~~~~l~~~~~----~~g~~vl~~~~~~~s~~~~~~~~a~~ 180 (458)
+.+..+.+.++.+.+++++|.+ .+-+.+ +|+.+...++.+++.++. ..+++|+++...|+++... +..
T Consensus 538 sQG~lq~i~elq~~l~eLtGmd---~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas----a~~ 610 (954)
T PRK12566 538 AEGYRAMIDELEAWLCAITGFD---AICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS----AQM 610 (954)
T ss_pred hcCHHHHHHHHHHHHHHHHCCC---eEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH----HHH
Confidence 4456788889999999999998 445554 667777677766642111 2356899999999988432 566
Q ss_pred cCCeEEEEeCCCCCCCCHHHHHHhhc---CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC-C
Q 012718 181 TGANLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-V 256 (458)
Q Consensus 181 ~g~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~-~ 256 (458)
.|++++.++.+++|.+|+++|+++++ +++++|.++++++..+...++++|+++||++|+++++|+++..+...++ .
T Consensus 611 ~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~P 690 (954)
T PRK12566 611 AGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARP 690 (954)
T ss_pred CCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCCh
Confidence 79999999999899999999999997 5778888999987777767799999999999999999999998777676 5
Q ss_pred CCCCCcEEEecccCCC-CCCceeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCC---CHHHHHHHH
Q 012718 257 QGLDADFLVASSHKMC-GPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTP---AIGEAIGLG 331 (458)
Q Consensus 257 ~~~~~d~~~~s~~K~~-gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~---~~~~~~~l~ 331 (458)
.++|+|++++|+||+| +|.|.|..++.. ...+.+.++..++..... +. .+-..|+. .+.+...+.
T Consensus 691 g~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~---~G-------~~~r~ga~S~~~~gsa~~l~ 760 (954)
T PRK12566 691 ADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPV---EG-------PDPNNGAVSAAPWGSASILP 760 (954)
T ss_pred hhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCC---CC-------CCCCCCceeecccchHHHHH
Confidence 7899999999999955 488877777766 555666666655532100 00 00012333 223333466
Q ss_pred HHHHHHHHhCHHHHHHH--HHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeC---CCChHHHHHHHhhhcCe
Q 012718 332 AAIDYLSTIGMQKIHAY--EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVE---NIHPTDIATLLDQQYGV 405 (458)
Q Consensus 332 ~al~~~~~~g~~~~~~~--~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~---~~~~~~~~~~l~~~~gi 405 (458)
.++.++...|.+..+.+ ...+++|+.++|.+..++.+ .....+..+-. +.++.++ +.+..++.++|.+. ||
T Consensus 761 ~A~~Yi~~lG~eLk~aa~~ailnAnYla~rL~~~~~v~~--~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~-Gi 837 (954)
T PRK12566 761 ISWMYIAMMGPQLADASEVAILSANYLANQLGGAFPVLY--RGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDY-GF 837 (954)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhHhhCCCCc--CCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHC-Cc
Confidence 77777777776622333 36789999999977433333 21110001112 2222333 35678899999965 99
Q ss_pred EeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 406 ATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 406 ~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
...... +...+.+||+++.+++.+|+|+++++|..+.+++.+
T Consensus 838 hapt~~---------fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~ 879 (954)
T PRK12566 838 HAPTMS---------FPVPGTLMVEPTESESKAELDRFVEAMLSIRAEIGK 879 (954)
T ss_pred EEeEEe---------eccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 764321 223779999999999999999999999999988755
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-23 Score=198.02 Aligned_cols=338 Identities=16% Similarity=0.168 Sum_probs=221.5
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
..++..+++.+.+.. ++... .....+++.+.+++++|.+ ++++|+|+|+|+.+++.++ .+++||
T Consensus 9 ~~~~e~~a~~~~~~~-------~~~~~---~g~~~~~~e~~la~~~g~~---~~v~~~sgt~aL~~~l~al---~~~pGd 72 (376)
T TIGR02379 9 VTGQELEYIAEAISE-------GKLSG---DGPFSRRCETWLENRTGTK---KALLTPSCTAALEMAALLL---DIQPGD 72 (376)
T ss_pred CCHHHHHHHHHHHHc-------CCccC---CcHHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHc---CCCCcC
Confidence 456667777777653 21110 1234567778899998876 8999999999999999887 478999
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV 237 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~ 237 (458)
+|+++.++|.+...++ ...|++++.++++++ +.+|++++++++++++++|+. ++++|...|+++|.++|+++
T Consensus 73 ~Viv~~~t~~~~~~~~----~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Iip---~~~~G~~~d~~~I~~la~~~ 145 (376)
T TIGR02379 73 EVIMPSYTFVSTANAF----VLRGAKIVFVDIRPDTMNIDETLIESAITHRTKAIVP---VHYAGVACDMDTIMALANKH 145 (376)
T ss_pred EEEECCCCcHHHHHHH----HHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEEE---eCCCCCccCHHHHHHHHHHC
Confidence 9999999999764443 456999999999876 578999999999999999874 45699999999999999999
Q ss_pred CcEEEEeccccCCcccCCCCCCC--CcEEEecccC--CCCCC-ceeEEEEe-ccccccCCCccccCcceEeeec-C--CC
Q 012718 238 GAKVLVDACQSVPHMVVDVQGLD--ADFLVASSHK--MCGPT-GIGFLFGK-SDLLSAMPPFLGGGEMISDVFL-D--HS 308 (458)
Q Consensus 238 ~~~vivD~a~~~g~~~~~~~~~~--~d~~~~s~~K--~~gp~-g~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~-~--~~ 308 (458)
|++||+|++|+.|.. .+-...+ .|+.++|+|+ .+.+. ..|+++.+ +++.+++..+...+........ . ..
T Consensus 146 ~i~vIeDaa~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 224 (376)
T TIGR02379 146 QLFVIEDAAQGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKY 224 (376)
T ss_pred CCEEEEECccccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcc
Confidence 999999999998875 3333333 3778888765 44433 25766665 5677777655432221111000 0 00
Q ss_pred CCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC--C-EEEeCCCCCCcCccc-cEEE
Q 012718 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP--N-IRIYGPKPSEHVQRA-ALCS 384 (458)
Q Consensus 309 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~--~-~~~~~~~~~~~~~~~-~~v~ 384 (458)
.+.....++. ++..+ +...+..+.. ++++.++.++++++..+.|..++ + ..+...++. .... .+++
T Consensus 225 ~~~~~g~n~~---~~~~~---Aa~g~~qL~~--l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~--~~~~~~~~~ 294 (376)
T TIGR02379 225 TWRDIGSSYL---PSELQ---AAYLWAQLEQ--ADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNG--CQHNAHMFY 294 (376)
T ss_pred eeeeecccCC---ccHHH---HHHHHHHHHH--hHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCC--CeeeeEEEE
Confidence 0111111121 11112 2223333443 56677777888888888887764 2 232211111 1111 2445
Q ss_pred EEeCC-CChHHHHHHHhhhcCeEeccCCCCC--hhhHhhcC----C--------CCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 385 FNVEN-IHPTDIATLLDQQYGVATRSGHHCA--QPLHRYLG----V--------NASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 385 ~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~--~~~~~~~g----~--------~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+.++. .+.+++.+.|.++ ||.++...... .+....++ . ...+.+-++...+++|++++++.|++
T Consensus 295 i~~~~~~~r~~l~~~L~~~-gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~ 373 (376)
T TIGR02379 295 IKLKDEDDRNELIKYLKEQ-EIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICD 373 (376)
T ss_pred EEECCcCCHHHHHHHHHHC-CCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHH
Confidence 56653 3688999999998 99877432110 11111111 0 45788888888899999999999998
Q ss_pred HH
Q 012718 450 TV 451 (458)
Q Consensus 450 ~~ 451 (458)
++
T Consensus 374 ~~ 375 (376)
T TIGR02379 374 YL 375 (376)
T ss_pred Hh
Confidence 65
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=182.63 Aligned_cols=346 Identities=18% Similarity=0.220 Sum_probs=242.1
Q ss_pred CCeEEecCCC-CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAA-TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+.|++|.-. .|..++++.+++.++-+-+..+..-.......-...-+.+..+.|++++|++ .+-+|+|+.++=..
T Consensus 15 r~~iNv~PiQrGGiLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D---~~R~t~GARe~Kfa 91 (382)
T COG1103 15 RGFINVNPIQRGGILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMD---EVRVTAGAREAKFA 91 (382)
T ss_pred cCccccChhhccCcCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCc---eeeecccchhhHHH
Confidence 4567777654 4478899999999886543221100000000112233456667799999998 78999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhcC-------CceEEEEe
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR-------KTKLVVIH 215 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~-------~~~~v~~~ 215 (458)
++.++ .++||.|++....|++++ -+|++.|.++..||.. +++.++++...+.|++ .+.+.+++
T Consensus 92 vMhal----~~~gd~vV~D~~aHYtty----vAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallT 163 (382)
T COG1103 92 VMHAL----CKEGDWVVVDSLAHYTTY----VAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLT 163 (382)
T ss_pred HHHHh----ccCCCEEEEcCcchHHHH----HHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEe
Confidence 99998 789999999999999764 4567889999999965 4578888887776643 36889999
Q ss_pred cccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCc-eeEEEEeccccccCCCcc
Q 012718 216 HISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG-IGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 216 ~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g-~G~l~~~~~~~~~l~~~~ 294 (458)
++....|.+.|.+.++++|+++|+++++.++|..|.+|++....++||+++|.||.++..| +|++.++.++.+.+-+..
T Consensus 164 h~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~S 243 (382)
T COG1103 164 HVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRS 243 (382)
T ss_pred ccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999665444 999999987654432111
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
.-....++.-+. .+-..|.|-...++++....+-.+.| +...+.++++.+.|+++.|+.-++..|.
T Consensus 244 g~~~~~KEvell--------GCT~rGapivTlmASfP~V~eRVkrW------deEv~kaR~fv~elEkigg~~qlG~rPk 309 (382)
T COG1103 244 GRAFPKKEVELL--------GCTVRGAPIVTLMASFPHVVERVKRW------DEEVEKARWFVAELEKIGGVKQLGERPK 309 (382)
T ss_pred ccccccceeeee--------cccccCchHHHHHhcCHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhHHHhCCCCc
Confidence 000001111000 01112333333444444333333332 2334668899999999977887776542
Q ss_pred CcCccccEEEEEeCCC---------ChHHHHHHHhhhcCeE-eccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 375 EHVQRAALCSFNVENI---------HPTDIATLLDQQYGVA-TRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~---------~~~~~~~~l~~~~gi~-~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
.--.+.|..|.. ...-+.+.|.++ ||. +++|. ..++.+|+-. .+.|+++..+
T Consensus 310 ----~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~R-gI~GI~~G~------------Tk~~K~svyG-l~~Eqve~V~ 371 (382)
T COG1103 310 ----NHDLMKFETPVFHEIAKKHKRKGYFLYEELKKR-GIHGIQPGQ------------TKYFKLSVYG-LSWEQVEYVV 371 (382)
T ss_pred ----ccceeeecCchHHHHHHhCcCCceeeHHHHHhc-CccccccCc------------eeEEEEEeec-CCHHHHHHHH
Confidence 123556665532 123467778887 775 34443 6789998654 6889999999
Q ss_pred HHHHHHHHhh
Q 012718 445 HALNETVSFF 454 (458)
Q Consensus 445 ~~l~~~~~~~ 454 (458)
+++++++++.
T Consensus 372 ~afkeI~eky 381 (382)
T COG1103 372 DAFKEIAEKY 381 (382)
T ss_pred HHHHHHHHhc
Confidence 9999998764
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-24 Score=204.68 Aligned_cols=289 Identities=18% Similarity=0.196 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
....++++++|++. . . +.++++||+.|+..++.++ +++||+|+++++.|+.....+....++.|++++.++.
T Consensus 51 p~~~~Le~~lA~l~-~--~-~~v~~~sG~~Ai~~~l~al----l~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 122 (366)
T PRK07582 51 PTWRALEAALGELE-G--A-EALVFPSGMAAITAVLRAL----LRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPT 122 (366)
T ss_pred ccHHHHHHHHHHHc-C--C-CEEEECCHHHHHHHHHHHh----cCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECC
Confidence 34567889999998 2 2 6677788889999999887 7899999999999986654444445667999999987
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEecccc--CCcccCCCCCCCCcEEEecc
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS--VPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~--~g~~~~~~~~~~~d~~~~s~ 268 (458)
++++ + .+.+++++|++++++||+|.+.|+++|+++|+++|+++++|++|+ .+..+++ +++|+++.|+
T Consensus 123 ~~~~-------~-~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~---~g~Divv~S~ 191 (366)
T PRK07582 123 AGMA-------E-AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLE---LGADLVVASD 191 (366)
T ss_pred CChH-------H-HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchh---cCCcEEEecc
Confidence 5321 1 234688999999999999999999999999999999999999986 3444443 5789999999
Q ss_pred cCCC-CCCc--eeEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 269 HKMC-GPTG--IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 269 ~K~~-gp~g--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
||++ |+.| +|+++.+ +++++.+..+.. +...+++......+...++. ++.
T Consensus 192 sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~---------------------~~g~~~~~~~a~l~~r~l~t-----l~~ 245 (366)
T PRK07582 192 TKALTGHSDLLLGYVAGRDPELMAAVERWRL---------------------LAGAIPGPFEAWLAHRSLGT-----LGL 245 (366)
T ss_pred cccccCCCCeeEEEEEcCcHHHHHHHHHHHH---------------------HhCCCCCHHHHHHHHhcccc-----HHH
Confidence 9965 5666 6988875 455444442211 11123333333322223332 344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCeEec---cC
Q 012718 345 IHAYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGVATR---SG 410 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~---~g 410 (458)
..++..+++..+.+.|++.|.++ +..|.-..+ ...+++++|.+. +..++.+.+... ++... -|
T Consensus 246 R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--~~~~~~~~~~~l-~~~~~~~s~G 322 (366)
T PRK07582 246 RFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--DAAAAERFVAAS-RLVVAATSFG 322 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--CHHHHHHHHHhC-CcceecccCC
Confidence 44667788999999999888765 332221111 135789999996 466677777665 66543 23
Q ss_pred CCCChhh-HhhcC--C-CCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 411 HHCAQPL-HRYLG--V-NASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 411 ~~~~~~~-~~~~g--~-~~~lRis~~~~~t~~di~~l~~~l 447 (458)
...+-.. ...++ . ++.||+|+++.+.++.|+.+.++|
T Consensus 323 ~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al 363 (366)
T PRK07582 323 GVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERAL 363 (366)
T ss_pred CccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHH
Confidence 2222111 11222 2 578999999844444444444444
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=207.16 Aligned_cols=321 Identities=18% Similarity=0.189 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+.+++.+|++.|.+ ..+++++|++|+..++.++ +++||+|+++.+.|++....+.......|+++..++.
T Consensus 58 pt~~~Le~~lA~l~g~~---~~l~~ssG~~Ai~~al~al----~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~ 130 (425)
T PRK06084 58 PTNDVLEQRVAALEGGV---GALAVASGMAAITYAIQTI----AEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH 130 (425)
T ss_pred chHHHHHHHHHHHhCCC---ceeEehhHHHHHHHHHHHH----hCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC
Confidence 34557889999999965 5678889999999999988 6899999999999997665554444446777777764
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. |++++++.+++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+... .....++|+++.|++|
T Consensus 131 ~-----d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~-~p~~~gaDivv~S~tK 204 (425)
T PRK06084 131 D-----DIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLC-RPFEHGADIVVHSLTK 204 (425)
T ss_pred C-----CHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC-ChhhcCCCEEEECchh
Confidence 3 899999999999999999999999999999999999999999999999999977653 2235689999999999
Q ss_pred CCCCCc--eeEEEEe-ccc-cccCCCccccCcceEeeecCCCCCCCCC-------------CccCCCCCCHHHHHHHHHH
Q 012718 271 MCGPTG--IGFLFGK-SDL-LSAMPPFLGGGEMISDVFLDHSTFADPP-------------SRFEAGTPAIGEAIGLGAA 333 (458)
Q Consensus 271 ~~gp~g--~G~l~~~-~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~gt~~~~~~~~l~~a 333 (458)
+++++| +|.+++. ... ......... .............+.... ..-.....+....+ ..
T Consensus 205 ~l~G~g~~~gG~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~---l~ 280 (425)
T PRK06084 205 YIGGHGTSIGGIVVDSGKFPWAEHKERFA-LLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAF---LI 280 (425)
T ss_pred cccccccceeEEEEeCCccchhhcccccc-ccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHH---HH
Confidence 887655 4444443 321 111110000 000000000000000000 00001112221111 22
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------Cc-cccEEEEEeCCCChHHHHHHHhh
Q 012718 334 IDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQ-RAALCSFNVENIHPTDIATLLDQ 401 (458)
Q Consensus 334 l~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~-~~~~v~~~~~~~~~~~~~~~l~~ 401 (458)
+.-++. ++...++..+++..+.+.|+++|.+. +..|.-..+ .. .+++++|.+.+ +..+..+.+..
T Consensus 281 lrgl~t--l~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~-~~~~~~~f~~~ 357 (425)
T PRK06084 281 LQGLET--LALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKG-GQAAGARFIDA 357 (425)
T ss_pred HcCcCc--HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecC-CHHHHHHHHHh
Confidence 222222 45666777888999999999998765 433321111 12 46799999975 22323333332
Q ss_pred h--cCeEeccCCCCC----h----------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 402 Q--YGVATRSGHHCA----Q----------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 402 ~--~gi~~~~g~~~~----~----------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
- +.+..+-|...+ + ......|. ++.+|+|++. ||.+.|++.|+++++..+
T Consensus 358 l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~svGl----Ed~~dLi~dl~~Al~~~~ 424 (425)
T PRK06084 358 LKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIGI----EHIDDIIADLAQALDASK 424 (425)
T ss_pred CCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhhh
Confidence 2 122223232111 0 11123444 5799999998 889999999999887654
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-23 Score=202.34 Aligned_cols=338 Identities=12% Similarity=0.139 Sum_probs=215.1
Q ss_pred CeEEecCCCCC----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 67 KLVYLDNAATS----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 67 ~~i~l~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
+..|+|..+.+ ...+++.+++.+++.++. +.+.+. .......+..+++++.|+++++. . .++++ ++++|+
T Consensus 45 g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g-~~~~~~-~~~~~~~~~~~~l~~~la~~~~~--~-~~~~~-sG~~a~ 118 (402)
T PRK07505 45 GHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTG-SLHLSS-SRTRVRSQILKDLEEALSELFGA--S-VLTFT-SCSAAH 118 (402)
T ss_pred CceEEEeecCCccCCCCCHHHHHHHHHHHHHhC-CCCCCc-cchhhhhHHHHHHHHHHHHHhCC--C-EEEEC-ChHHHH
Confidence 44556654433 348999999999987643 111111 11112456778899999999986 2 44455 566788
Q ss_pred HHHHHHcCCCCCCCC-CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 143 NLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
..++..+......++ ..|++.+..+|+.........+ .+.+++.+|.. |++.+++.++++++++++..++||+
T Consensus 119 ~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~~~-----d~~~l~~~~~~~~~~~vl~~p~~~~ 192 (402)
T PRK07505 119 LGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETIDHN-----DLDALEDICKTNKTVAYVADGVYSM 192 (402)
T ss_pred HHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeCCC-----CHHHHHHHHhcCCCEEEEEeccccc
Confidence 877765421112222 2466666666654322233322 35677888764 8899999988778889999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcc-----cC---CCC--CCCCcEEEecccCCCCCCceeEEEE-eccccccC
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VV---DVQ--GLDADFLVASSHKMCGPTGIGFLFG-KSDLLSAM 290 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~---~~~--~~~~d~~~~s~~K~~gp~g~G~l~~-~~~~~~~l 290 (458)
|.+.|+++|.++|+++|+++|+|++|+.+.. .. .+. ..+..+++.|++|.+|+.| |++++ ++++++.+
T Consensus 193 G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G-g~~~~~~~~~~~~~ 271 (402)
T PRK07505 193 GGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG-GVIMLGDAEQIELI 271 (402)
T ss_pred CCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC-eEEEeCCHHHHHHH
Confidence 9999999999999999999999999864211 01 111 1234577789999887665 77765 55555554
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYG 370 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 370 (458)
.....++. | .++++....+++.++++.+.+..+.+..++++++.+.+.+.+... .
T Consensus 272 ~~~~~~~t------------------~-~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~-- 326 (402)
T PRK07505 272 LRYAGPLA------------------F-SQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE----Q-- 326 (402)
T ss_pred HHhCCCce------------------e-CCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc----C--
Confidence 43221111 1 345666677777777776655455555555555555444332211 0
Q ss_pred CCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.. ...++..+.+.+ ....++.+.|.++ ||.+++..+...+ ..+.++||+++..++++|++++++.|++
T Consensus 327 ~g-----~~~~i~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~p~~~-----~~~~~lRi~~~~~~t~eei~~~~~~l~~ 395 (402)
T PRK07505 327 SG-----SFLPIRLIYIGDEDTAIKAAKQLLDR-GFYTSPVFFPVVA-----KGRAGLRIMFRASHTNDEIKRLCSLLKE 395 (402)
T ss_pred CC-----CCCCEEEEEeCCHHHHHHHHHHHHHC-CCeEeeecCCCCC-----CCCceEEEecCccCCHHHHHHHHHHHHH
Confidence 11 113344444442 1356788999988 9999875322111 0136899999999999999999999999
Q ss_pred HHHh
Q 012718 450 TVSF 453 (458)
Q Consensus 450 ~~~~ 453 (458)
++++
T Consensus 396 ~l~~ 399 (402)
T PRK07505 396 ILDE 399 (402)
T ss_pred HHHh
Confidence 8864
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=203.70 Aligned_cols=312 Identities=15% Similarity=0.194 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
+..+.+++.++++.|.. ..+.+++|+.|+..++.++ +++||+|+++++.|+++...+.. .++.|++++.++.
T Consensus 47 p~~~~lE~~la~leg~~---~~v~~ssG~~Ai~~~l~al----l~~Gd~Vv~~~~~y~~t~~~~~~-l~~~G~~v~~v~~ 118 (397)
T PRK05939 47 PTTAALEAKITKMEGGV---GTVCFATGMAAIAAVFLTL----LRAGDHLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDA 118 (397)
T ss_pred HHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHH----cCCCCEEEECCCccccHHHHHHH-HHhcCCEEEEECC
Confidence 44567889999999987 4456666789999999887 78999999999999877655544 5678999999987
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. |++++++++++++++|++++++||+|.+.|+++|+++||++|+++++|++|+.+.. ++..+.++|+++.|++|
T Consensus 119 ~-----d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~-~~~~~~gaDivv~S~sK 192 (397)
T PRK05939 119 T-----DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL-FRPKDVGASLVINSLSK 192 (397)
T ss_pred C-----CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc-cCccccCCEEEEecCee
Confidence 4 88999999999999999999999999999999999999999999999999987753 55556789999999999
Q ss_pred CCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCC--CC--CCC---CCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 271 MCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS--TF--ADP---PSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 271 ~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~--~~--~~~---~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
++++.| +|.+++.+...+.. +|......+.... .+ ... ..+...+..+......+...++.
T Consensus 193 ~~~g~g~~igg~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~t----- 262 (397)
T PRK05939 193 YIAGHGNALGGAVTDTGLFDWS-----AYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIGAET----- 262 (397)
T ss_pred cccCCCCeEEEEEecCcccccc-----cccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCc-----
Confidence 887766 56665543321110 0000000000000 00 000 00001122222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhhcCeE---e
Q 012718 342 MQKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQYGVA---T 407 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~---~ 407 (458)
+....++..+++..+.+.|++.|.++ +..|.-.. ....+++++|.+.+ ..+..+.+..- .+. .
T Consensus 263 l~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~--~~~~~~f~~~l-~l~~~~~ 339 (397)
T PRK05939 263 LALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELAD--GIDCFDFLNRL-KLVIKAT 339 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCC--HHHHHHHHHhC-CcceEcc
Confidence 23333444567888888898887654 33332110 02457799999974 22333333322 332 1
Q ss_pred ccCCCCC------h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 408 RSGHHCA------Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 408 ~~g~~~~------~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+-|...+ . ......|. ++.+|+|++. ||++.+++.|.+++++
T Consensus 340 s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGl----Ed~~dLi~dl~~Al~~ 396 (397)
T PRK05939 340 HLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGI----EDEADLIADFEQALDA 396 (397)
T ss_pred CCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHhc
Confidence 2222111 0 11123343 5699999998 7888888888888753
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=204.62 Aligned_cols=327 Identities=17% Similarity=0.162 Sum_probs=219.3
Q ss_pred CCeEEecCC----CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 66 KKLVYLDNA----ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 66 ~~~i~l~~~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
..++.|..+ ..|..++.+.+++.+.+....... ..+ ..+...++.+.+++++|.+ ++++++|+++|
T Consensus 27 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~-----~~~~~~~l~~~la~~~g~~---~~~~~~sg~~a 96 (379)
T TIGR00707 27 KEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVS--NLY-----YTEPQEELAEKLVEHSGAD---RVFFCNSGAEA 96 (379)
T ss_pred CEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccc--ccc-----CCHHHHHHHHHHHhhCCCC---EEEEeCCcHHH
Confidence 444445442 345666899999998887642111 000 2345667889999999875 89999999999
Q ss_pred HHHHHHHcCCCCCC----CCCEEEEcCCCCccchHHHHHHHHHcCCeEE----EEeCCCCCC----CCHHHHHHhhcCCc
Q 012718 142 INLVAYSWGLSNLK----SGDEVILTVAEHHSAIVPWQLVAQKTGANLK----FLNLNDDES----PDLDKLKEMLSRKT 209 (458)
Q Consensus 142 ~~~~~~~l~~~~~~----~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~----~v~~~~~~~----~d~~~l~~~l~~~~ 209 (458)
+..++..++. ... ++++|++++++|++........ +.... ..+...+.. .|++.+++.+++++
T Consensus 97 ~~~a~~~~~~-~~~~~~~~~~~vi~~~~~yh~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 171 (379)
T TIGR00707 97 NEAALKLARK-YTGDKGKEKKKIIAFENSFHGRTMGALSA----TGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDET 171 (379)
T ss_pred HHHHHHHHHH-HhhccCCCCCeEEEECCCcCCccHHHHHh----cCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCe
Confidence 9999886521 011 3799999999998654322221 22211 122222211 18999999998889
Q ss_pred eEEEEecccCcCcccc-c---HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC-CceeE
Q 012718 210 KLVVIHHISNMLASIL-P---IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-TGIGF 279 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~-~---l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp-~g~G~ 279 (458)
++|+++++++++|... + +++|.++|+++|+++|+|++|. ++.. +.......+|++ +++|.+++ ..+|+
T Consensus 172 ~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~~G~riG~ 249 (379)
T TIGR00707 172 AAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDII--TLAKGLGGGVPIGA 249 (379)
T ss_pred eEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEE--EEcccccCCcccEE
Confidence 9999988888888653 3 7899999999999999999997 3321 111223346765 57997773 23999
Q ss_pred EEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 280 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++.++++++.+.....+ . ..+.+...+.++.++++.+.. ..+.++++++.+++.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~aa~aaL~~~~~---~~~~~~~~~~~~~~~~~ 305 (379)
T TIGR00707 250 TLAKEEVAEAFTPGDHG--------------------S-TFGGNPLACAAALAVLEVIEK---ERLLENVKEKGDYFKER 305 (379)
T ss_pred EEEcHHHHhhhcCCCCC--------------------C-CCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHH
Confidence 99998887776542110 0 113455666777777776653 34667777788888877
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
|.++ +.+...... ...+.++++.++. +..++.+.|.++ ||.+.++. .+++|++++...+.++
T Consensus 306 l~~~-~~~~~~~~~---~~~g~~~~~~~~~-~~~~~~~~l~~~-Gv~v~~~~------------~~~lRi~~~~~~t~~~ 367 (379)
T TIGR00707 306 LEEL-GKNYPNKEV---RGKGLMLGIELEA-PCKDIVKKALEK-GLLVNCAG------------PKVLRFLPPLIITKEE 367 (379)
T ss_pred HHHH-HhhCCCCcc---ccCceEEEEEecC-cHHHHHHHHHHC-CcEEeeCC------------CCEEEEECCCcCCHHH
Confidence 7654 222111110 1225688888764 367889999988 99998643 4689999998889999
Q ss_pred HHHHHHHHHHHH
Q 012718 440 VDEFIHALNETV 451 (458)
Q Consensus 440 i~~l~~~l~~~~ 451 (458)
+++++++|++++
T Consensus 368 i~~~~~~l~~~~ 379 (379)
T TIGR00707 368 IDEAVSALEEAI 379 (379)
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=203.82 Aligned_cols=312 Identities=20% Similarity=0.201 Sum_probs=235.9
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
....+.-......+++.+.+.+..++......+ ...+......+++...++++++.+..-...||+|+|+|+.++
T Consensus 61 ~p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~-----~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~la 135 (460)
T COG0076 61 HPRANLAGFCPTRVPPVAAELLVSALNKNLGDP-----DESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLA 135 (460)
T ss_pred CcceEEEccCCCCCHHHHHHHHHHHHhhcCCCc-----ccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHH
Confidence 344455555666778888888888876533222 222356777778999999999997544779999999999988
Q ss_pred HHHcCCCCC----C-C-----CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceE--E
Q 012718 146 AYSWGLSNL----K-S-----GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKL--V 212 (458)
Q Consensus 146 ~~~l~~~~~----~-~-----g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~--v 212 (458)
+.+.+.... . . ..+|+++...|. ++.+.++..|..++.++.++ ++.+|++++++++++.+.. |
T Consensus 136 l~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~----s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~v 211 (460)
T COG0076 136 LLAARERWRKRALAESGKPGGKPNIVCSETAHF----SFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVV 211 (460)
T ss_pred HHHHHHHHHHHhhhcccccCCCCeEEecCcchh----HHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCceE
Confidence 877542111 0 0 126999999998 56888888999999999998 7999999999999998766 9
Q ss_pred EEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC-------CCCCCCcEEEecccC-CCCCCceeEEEEec
Q 012718 213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-------VQGLDADFLVASSHK-MCGPTGIGFLFGKS 284 (458)
Q Consensus 213 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~-------~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~ 284 (458)
+.+.+++++|.+.|+++|+++|+++++++|||+|++....|+. ..-.++|.++.|+|| .+.|.|+|++++|+
T Consensus 212 V~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd 291 (460)
T COG0076 212 VGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRD 291 (460)
T ss_pred EEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEEC
Confidence 9999999999999999999999999999999999996665432 222358999999999 57799999999998
Q ss_pred c-ccccCC---CccccCcceEeeecCCCCCCCCCCccC-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 285 D-LLSAMP---PFLGGGEMISDVFLDHSTFADPPSRFE-AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 285 ~-~~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
+ ...+.. .++.+++. ...+. .|+.+....++....+..+...|+.++.+++.++++++.+.
T Consensus 292 ~e~l~~~~~~~~~yl~~~~--------------~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~ 357 (460)
T COG0076 292 EEALRRILIFADYYLPGGG--------------IPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEE 357 (460)
T ss_pred HHHhhhhhhcccccCCCCC--------------cCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHH
Confidence 7 333322 22221111 11122 45666668888889999998889999999999999999999
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeCCCC--hHHHHHHHhhhcCeEe
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVENIH--PTDIATLLDQQYGVAT 407 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~l~~~~gi~~ 407 (458)
|++.+.+++..++. .++|+|+.++.. ..+....+... |-.+
T Consensus 358 l~~~~~~e~~~~p~------l~~V~fr~~~~~~~~~~~~~~~~~~-gw~v 400 (460)
T COG0076 358 LEKLGDFELVNEPE------LPIVAFRLKDDEDTLADLSERLDRR-GWQV 400 (460)
T ss_pred HHhCCCcEeecCCc------cceEEEEcCCcccchhchHHHHHhc-Ccee
Confidence 99997799887653 889999996421 34455555544 5554
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=202.06 Aligned_cols=295 Identities=20% Similarity=0.211 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
......+++.+|++.|.+ ..+++++|+.++..++. + +++||+|+++++.|.+....+...+++.|++++.++
T Consensus 49 ~p~~~~Le~~lA~l~g~~---~~~~~~sG~aai~~~~~-~----l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~ 120 (377)
T PRK07671 49 NPTRAALEELIAVLEGGH---AGFAFGSGMAAITAVMM-L----FSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVD 120 (377)
T ss_pred ChHHHHHHHHHHHHhCCC---ceEEeCCHHHHHHHHHH-H----hCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEEC
Confidence 344667889999999986 34567777788877664 4 579999999999999777666666777899999987
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.. |++++++++++++++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.+.... ...++.|+++.|++
T Consensus 121 ~~-----d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~-p~~~g~Divv~S~s 194 (377)
T PRK07671 121 TS-----NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQS-PISLGADIVLHSAT 194 (377)
T ss_pred CC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCC-hhhhCCeEEEecCc
Confidence 54 8899999999999999999999999999999999999999999999999998654422 22467899999999
Q ss_pred CCCC-CCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMCG-PTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~g-p~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|++| +.+ .|++++++ ++++.+..... ...+..+......+ +.-++. +...
T Consensus 195 K~l~G~~~~~~G~~v~~~~~l~~~~~~~~~---------------------~~g~~~~~~~a~l~---~~~l~t--l~~R 248 (377)
T PRK07671 195 KYLGGHSDVVAGLVVVNSPELAEDLHFVQN---------------------STGGILGPQDSWLL---LRGLKT--LGIR 248 (377)
T ss_pred ccccCCccceeEEEEeCcHHHHHHHHHHHH---------------------hhcCCCCHHHHHHH---HcCcCh--HHHH
Confidence 9776 443 67777754 44444432211 00122333222222 222222 3445
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEe-CCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhhcCe---EeccCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIY-GPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSGH 411 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g~ 411 (458)
.++..+++..+.+.|++.|++..+ .|.-.. ....+++++|.+. +..+..+.+..- .+ .++-|.
T Consensus 249 ~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~--~~~~~~~f~~~l-~l~~~~~s~G~ 325 (377)
T PRK07671 249 MEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVG--SEETANKVLERL-QYFTLAESLGA 325 (377)
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeC--CHHHHHHHHHhC-CcceEccCCCC
Confidence 566678889999999988776533 332111 0234679999993 334444444322 33 222233
Q ss_pred CCC----h----------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 412 HCA----Q----------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 412 ~~~----~----------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
..+ + ......|. ++.||+|++. ||++.+++.|++++
T Consensus 326 ~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al 376 (377)
T PRK07671 326 VESLISIPSQMTHASIPADRRKELGITDGLIRISVGI----EDGEDLIEDLAQAL 376 (377)
T ss_pred CCeEeECCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHh
Confidence 111 0 01123444 5789999998 78888888888776
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=204.02 Aligned_cols=288 Identities=19% Similarity=0.180 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
....++++++|++.|.+ ++++++|+++|+.+++. + +++||+|+++.+.|.+....+.......+.++..
T Consensus 54 p~~~~le~~lA~leg~~---~~v~~~sG~aAi~~~l~-~----l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~--- 122 (364)
T PRK07269 54 PTRAKLEETLAAIESAD---YALATSSGMSAIVLAFS-V----FPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTY--- 122 (364)
T ss_pred ccHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHH-H----hCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEe---
Confidence 34557889999999865 89999999999999885 4 5799999999999987754333332322322222
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
..|++++++++++++++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+... ..-..++|+++.|++|
T Consensus 123 ----~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~-~pl~~gaDivv~S~tK 197 (364)
T PRK07269 123 ----ANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQ-RPIELGADIVLHSATK 197 (364)
T ss_pred ----cCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-CchhhCCcEEEecCce
Confidence 23889999999999999999999999999999999999999999999999998766542 2235689999999999
Q ss_pred CCCCCc---eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 271 MCGPTG---IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 271 ~~gp~g---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
+++.+| .|+++.++ ++.+++..... ......+....+.+ +.-++. ++...
T Consensus 198 ~l~g~~d~~gG~v~~~~~~l~~~~~~~~~---------------------~~G~~~s~~~a~l~---~~~L~t--L~~r~ 251 (364)
T PRK07269 198 YLSGHNDVLAGVVVTNDLELYEKLFYNLN---------------------TTGAVLSPFDSYLL---MRGLKT--LSLRM 251 (364)
T ss_pred eccCCCcccceEEEeCcHHHHHHHHHHHH---------------------HhCCCCCHHHHHHH---HcCCCc--HHHHH
Confidence 776555 68878754 44444431111 00112233222222 222322 56667
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHH---HHHHHhhhcCeEeccCCCCC---------
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTD---IATLLDQQYGVATRSGHHCA--------- 414 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~l~~~~gi~~~~g~~~~--------- 414 (458)
++.++++.++.+.|++.|.+.....++ .+++++|.+.+ ..+ +.+.+.-- .+..+-|...+
T Consensus 252 ~~~~~na~~~a~~L~~~p~v~~v~ypg-----~gg~~sf~~~~--~~~~~~f~~~l~~~-~~~~slG~~~sl~~~p~~~~ 323 (364)
T PRK07269 252 ERSTANAQEVVAFLKKSPAVKEVLYTG-----KGGMISFKVAD--ETRIPHILNSLKVF-TFAESLGGVESLITYPTTQT 323 (364)
T ss_pred HHHHHHHHHHHHHHHhCCCccEEeCCC-----cCcEEEEEECC--HHHHHHHHHhCCcc-eEccCCCCcCeEeeCCcccc
Confidence 777899999999999988765333232 27899999863 332 33322211 22222222111
Q ss_pred -----hhhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 415 -----QPLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 415 -----~~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
......+|. ++.+|+|++. ||++.+++.|+++++
T Consensus 324 ~~~~~~~~r~~~Gi~~~liRlsvGl----E~~~dli~dl~~al~ 363 (364)
T PRK07269 324 HADIPAEVRHSYGLTDDLLRLSIGI----EDARDLIADLKQALE 363 (364)
T ss_pred cccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHhc
Confidence 011123444 6799999997 788888888887764
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-23 Score=200.08 Aligned_cols=313 Identities=19% Similarity=0.213 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+++++.+++++|.+ .++.++|||.|+.+++.++ .+++||+|+++..++.+...++ ...|++++.+++
T Consensus 25 ~~~~~fE~~~a~~~g~~---~~~~~~sgt~Al~~al~~l---~~~~gdeVi~p~~t~~~~~~ai----~~~G~~pv~~Di 94 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVK---YAVAVSSGTSALHLALRAL---GLGPGDEVIVPAYTFPATASAI----LWAGAEPVFVDI 94 (363)
T ss_dssp HHHHHHHHHHHHHHTSS---EEEEESSHHHHHHHHHHHT---TGGTTSEEEEESSS-THHHHHH----HHTT-EEEEE-B
T ss_pred HHHHHHHHHHHHHhCCC---eEEEeCChhHHHHHHHHhc---CCCcCceEecCCCcchHHHHHH----HHhccEEEEEec
Confidence 45567889999999977 8999999999999999999 4889999999999999765444 456999999999
Q ss_pred C-CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC--CCCCCCcEEEec
Q 012718 191 N-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD--VQGLDADFLVAS 267 (458)
Q Consensus 191 ~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~--~~~~~~d~~~~s 267 (458)
+ +++.+|++.+++++++++++|++.|. .|...++++|.++|+++|++||+|++|++|...-+ +..+ -|+.++|
T Consensus 95 ~~~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~-gd~~~fS 170 (363)
T PF01041_consen 95 DPETLNIDPEALEKAITPKTKAILVVHL---FGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSF-GDIAIFS 170 (363)
T ss_dssp ETTTSSB-HHHHHHHHHTTEEEEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSS-SSEEEEE
T ss_pred cCCcCCcCHHHHHHHhccCccEEEEecC---CCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCC-CCceEec
Confidence 9 56899999999999999999999998 89999999999999999999999999999986321 2333 4999999
Q ss_pred cc--CCCCCCceeEEEEecc-ccccCCCccccCcceEeeecCCCCCCCCC-CccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 268 SH--KMCGPTGIGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPP-SRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 268 ~~--K~~gp~g~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
|+ |.+.....|+++++++ +.+++..+.. ++..... ...+.... .++.. .++ -+.+..++..+.. ++
T Consensus 171 f~~~K~i~~geGG~v~~~~~~~~~~~~~~~~-~g~~~~~---~~~~~~~~~~g~n~-rm~---~~~AAigl~QL~~--L~ 240 (363)
T PF01041_consen 171 FHPTKIITTGEGGAVVTNDPELAERARALRN-HGRSRDA---FRRYRHELPPGYNF-RMS---ELQAAIGLAQLKR--LD 240 (363)
T ss_dssp SSTTSSS-SSS-EEEEESTHHHHHHHHHHTB-TTEETSE---CSTTEESSSS--B--B-B---HHHHHHHHHHHHT--HH
T ss_pred CCCCCCCcCCCCeeEEecHHHHHHHhhhhhc-cCcCccc---cccccccccCCccc-ccH---HHHHHHHHHHHHH--hh
Confidence 86 7665444788888764 3344432222 1110000 00000000 01111 111 1223334455554 68
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCCC---hhh
Q 012718 344 KIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHCA---QPL 417 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~---~~~ 417 (458)
...++.+++.+++.+.|.+++++................+.+.+++. +.+++.+.|.++ ||.+++..... .+.
T Consensus 241 ~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~-GI~~~~~~~~pl~~~~~ 319 (363)
T PF01041_consen 241 EIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRAR-GIETRPHYPKPLHRQPV 319 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHT-TBEEBCSTSSCGGGSGG
T ss_pred hhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHHC-CCcccccccCchhhhHH
Confidence 88888899999999999999988765554331001122455666653 688999999999 99987644101 011
Q ss_pred HhhcC-----C--------CCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 418 HRYLG-----V--------NASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 418 ~~~~g-----~--------~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
..... . ...+.+.++...+.+|++++++.|+
T Consensus 320 ~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 320 YRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp GTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred HHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 11110 0 4678888888899999999999875
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=186.58 Aligned_cols=319 Identities=19% Similarity=0.186 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC
Q 012718 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND 192 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~ 192 (458)
...++++++.+-|.- .-+-+.||+.|+.+++..+ .++||.|+.+..-|.++...+....++.|++++.++.+
T Consensus 64 ~~vlE~RiAaLEGG~---aa~a~aSG~AA~~~ai~~l----a~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~- 135 (426)
T COG2873 64 TDVLEERIAALEGGV---AALAVASGQAAITYAILNL----AGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD- 135 (426)
T ss_pred HHHHHHHHHHhhcch---hhhhhccchHHHHHHHHHh----ccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC-
Confidence 334568898887765 3467889999999999988 78999999999999999888888889999999999876
Q ss_pred CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCC
Q 012718 193 DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC 272 (458)
Q Consensus 193 ~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~ 272 (458)
|++.++++|+++|++|+++...||.+.+.|+++|+++||++|+++|||.+.+.+.+ +..-+.|+|+++-|.+|+.
T Consensus 136 ----d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl-~rP~~hGADIVvHS~TK~i 210 (426)
T COG2873 136 ----DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL-CRPIEHGADIVVHSATKYI 210 (426)
T ss_pred ----CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee-cchhhcCCCEEEEeecccc
Confidence 89999999999999999999999999999999999999999999999999998865 4455789999999999999
Q ss_pred CCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCC----CC---------CccCCCCCCHHHHHHHHHHHHHH
Q 012718 273 GPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFAD----PP---------SRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 273 gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~----~~---------~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
|+.| +|-+++.....+.-.+-........+..+..-.|.. .+ -|-...+.++.....+...++.+
T Consensus 211 gGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL 290 (426)
T COG2873 211 GGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETL 290 (426)
T ss_pred cCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhh
Confidence 8888 677777665443331111000000000000000000 00 00001122222222222222222
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC------------CCcCccccEEEEEeCCC--ChHHHHHHHhhh-
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP------------SEHVQRAALCSFNVENI--HPTDIATLLDQQ- 402 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~~~--~~~~~~~~l~~~- 402 (458)
.-..++..+++..+.+.|+++|.+.++.-+. ..+...+.+++|.+.+. ....+++.|.--
T Consensus 291 -----~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~s 365 (426)
T COG2873 291 -----SLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFS 365 (426)
T ss_pred -----HHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHHHH
Confidence 2234666688999999999998777664432 12245677999999863 123343333210
Q ss_pred --cCeE-ecc-CCCCChhhHh--------hcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 403 --YGVA-TRS-GHHCAQPLHR--------YLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 403 --~gi~-~~~-g~~~~~~~~~--------~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.+|- ++. -.++.+..|. ..|. ++.||+|++. ||++.+++.|++++++
T Consensus 366 ~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGI----Ed~~DiiaDl~qAl~~ 425 (426)
T COG2873 366 HLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGI----EDIDDIIADLEQALEA 425 (426)
T ss_pred hhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEecc----CCHHHHHHHHHHHHhc
Confidence 0210 000 0122222222 2333 7899999997 8999999999988764
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-22 Score=207.02 Aligned_cols=323 Identities=18% Similarity=0.159 Sum_probs=229.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC----CCCCEEEEcCCCCccchHHHHHHHHHc
Q 012718 106 SAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL----KSGDEVILTVAEHHSAIVPWQLVAQKT 181 (458)
Q Consensus 106 ~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~----~~g~~vl~~~~~~~s~~~~~~~~a~~~ 181 (458)
..+..+.+.++.+.+++++|.+. .-+..++|++|....+.+++.+.- ..+++|+++...|+++ ...+...
T Consensus 525 sqG~lq~i~elq~~l~eltGmd~--~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtn----Pasa~~~ 598 (939)
T TIGR00461 525 VEGYQELIAQLEKWLCSITGFDA--ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTN----PASAAMA 598 (939)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCC--cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcC----HHHHHHC
Confidence 34477889999999999999983 335556677666655555532110 2356899999999877 3346777
Q ss_pred CCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEecccCcCccccc-HHHHHHHHHhcCcEEEEeccccCCcccC-CC
Q 012718 182 GANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNMLASILP-IEEIVHWSHDVGAKVLVDACQSVPHMVV-DV 256 (458)
Q Consensus 182 g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~-l~~i~~l~~~~~~~vivD~a~~~g~~~~-~~ 256 (458)
|++++.|+.+++|.+|+++|++++++ ++++|++++++| +|.+.+ +++|+++||++|.++++|+++..+...+ +.
T Consensus 599 G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~P 677 (939)
T TIGR00461 599 GMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSP 677 (939)
T ss_pred CCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCc
Confidence 99999999998999999999999974 889999999998 799887 9999999999999999999998654433 45
Q ss_pred CCCCCcEEEecccC-CC-----CCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccC--CCCCCHHHHH
Q 012718 257 QGLDADFLVASSHK-MC-----GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFE--AGTPAIGEAI 328 (458)
Q Consensus 257 ~~~~~d~~~~s~~K-~~-----gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~~~~ 328 (458)
.++++|++++|.|| ++ |++|+|++.+++.+. ++..|.............. ..+.. ..+.+.....
T Consensus 678 g~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~----~~lPg~~v~~t~d~~greq---~Iga~s~~~~g~a~~~l 750 (939)
T TIGR00461 678 GDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLI----PFLPKHDVVSMITGIGGSK---SIGSVSAAPYGSASILP 750 (939)
T ss_pred cccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhch----hhcCCCcccccccCCCCcc---ccccccccccCcHHHHH
Confidence 78899999999999 66 455589999998644 3433332211100000000 01111 2344445556
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC------CCChHHHHHHHhhh
Q 012718 329 GLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE------NIHPTDIATLLDQQ 402 (458)
Q Consensus 329 ~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~l~~~ 402 (458)
..+..+..+...|+.+..+....+++|+.++|++ ++++..+... .....-++|+++ +....++.++|.+.
T Consensus 751 ~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~--~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~ 826 (939)
T TIGR00461 751 ISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTL--KHVAHECILDLRPLKAKTGIEAIDVAKRLQDY 826 (939)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCC--CceeEEEEEeccchhhhcCCCHHHHHHHHHhC
Confidence 6667777887788999999999999999999987 4555443211 011122555554 46788999999988
Q ss_pred cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 403 YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 403 ~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
|+.....+ + + ..+.+-|.+..-.+.+|||++++++.++.+++++
T Consensus 827 -G~hapt~~-~--p------v~g~lmiepTE~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 827 -GFHAPTLS-F--P------VPGTLMVEPTESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred -CeeccccC-C--c------cCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99754322 1 1 1345555555558999999999999999887765
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=202.44 Aligned_cols=299 Identities=14% Similarity=0.174 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
....+++.+|++.|.+ ++++++||+.|+..++.++ +++||.|+++.+.|......+...++..|++++.++..
T Consensus 84 t~~~Le~~lA~leg~~---~~iv~~sG~~Ai~~~l~al----~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~ 156 (427)
T PRK07049 84 NSEIVEDRLAVYEGAE---SAALFSSGMSAIATTLLAF----VRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADG 156 (427)
T ss_pred CHHHHHHHHHHHhCCC---cEEEEccHHHHHHHHHHHH----hCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCC
Confidence 3457889999999865 6888899999999999888 78999999999999977554455556779987777622
Q ss_pred CCCCCCHHHHHHhhc-----CCceEEEEecccCcCcccccHHHHHHHHHh------cCcEEEEeccccCCcccCCCCCCC
Q 012718 192 DDESPDLDKLKEMLS-----RKTKLVVIHHISNMLASILPIEEIVHWSHD------VGAKVLVDACQSVPHMVVDVQGLD 260 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~------~~~~vivD~a~~~g~~~~~~~~~~ 260 (458)
.|.+++++.+. +++++|++++|+||||.++|+++|.++++. +++++++|+++..+.....+ ..+
T Consensus 157 ----~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl-~~g 231 (427)
T PRK07049 157 ----LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPL-EHG 231 (427)
T ss_pred ----CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCcc-ccC
Confidence 36677776663 478999999999999999999999999987 89999999998754331122 457
Q ss_pred CcEEEecccCCCC-CCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH
Q 012718 261 ADFLVASSHKMCG-PTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 261 ~d~~~~s~~K~~g-p~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
.|+++.|++|.+| ..| +|+++.++++++.+......+ .++.+......+..+++.
T Consensus 232 ~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~---------------------g~~ls~~~a~l~~r~L~t- 289 (427)
T PRK07049 232 ADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAI---------------------GTQLDPHSCWMLGRSLET- 289 (427)
T ss_pred CCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhc---------------------CCCCCHHHHHHHHcCCCh-
Confidence 8999999999777 455 899998887766665332211 123444333444334433
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCC---CCC---------cCccccEEEEEeCCCChHHHHHHHhhh--
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSIPNIR-IYGPK---PSE---------HVQRAALCSFNVENIHPTDIATLLDQQ-- 402 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~---~~~---------~~~~~~~v~~~~~~~~~~~~~~~l~~~-- 402 (458)
+....++..+.++.+.+.|++.|+++ +..|. +.. ....+++++|.+.+ +.++..+.+..-
T Consensus 290 ----l~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~l 364 (427)
T PRK07049 290 ----LVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG-GQAAAFRFLNALQI 364 (427)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC-CHHHHHHHHHcCcc
Confidence 23334555788899999999888765 33331 110 02446799999974 223333332222
Q ss_pred cCeEeccCCCCC------hh--------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 403 YGVATRSGHHCA------QP--------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 403 ~gi~~~~g~~~~------~~--------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+.+.++-|...+ .. .....|. ++.||+|++. ||++.+++.|.+++++
T Consensus 365 ~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~ 426 (427)
T PRK07049 365 FKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGI----EHPDDLIADLAQALDA 426 (427)
T ss_pred cEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHHhc
Confidence 122233333111 00 1113444 5789999998 7888899988888763
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=205.76 Aligned_cols=241 Identities=16% Similarity=0.157 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHc----CCC-CCCcEEEeCChhHHHHHHHHHcCCCCC-CCCCEEEEcCCCCccchHHHHHHHHHcCCe
Q 012718 111 DEYELARKKVAAFI----NAS-DSGEIVFTKNATEAINLVAYSWGLSNL-KSGDEVILTVAEHHSAIVPWQLVAQKTGAN 184 (458)
Q Consensus 111 ~~~~~~~~~la~~~----g~~-~~~~v~~t~g~t~a~~~~~~~l~~~~~-~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~ 184 (458)
....++|+++++++ |.+ ..++|++|+|+++++..++.++ + ++||.|++++|+|+ .+...++..|++
T Consensus 107 ~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l----~~~pGd~Vli~~P~Y~----~y~~~~~~~g~~ 178 (407)
T PLN02368 107 RGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAV----IRGEKDGVLVPVPQYP----LYSATISLLGGT 178 (407)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHH----cCCCCCEEEEeCCCCc----cHHHHHHHcCCE
Confidence 34457778888777 533 2249999999999999999887 4 68999999999999 446667778999
Q ss_pred EEEEeCCCC--CCCCHHHHHHhhcC------CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-
Q 012718 185 LKFLNLNDD--ESPDLDKLKEMLSR------KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM- 252 (458)
Q Consensus 185 ~~~v~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~- 252 (458)
++.++++++ +.+|++.+++.+++ +++++++++|+||||.+++ +++|+++|++||++||+|++|..-..
T Consensus 179 ~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~ 258 (407)
T PLN02368 179 LVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQ 258 (407)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence 999998753 67899999998864 6899999999999999999 66888899999999999999973211
Q ss_pred ---c-CC-------CC----CCCCcEEEecccCCC-CCCc--eeEEEE---eccccccCCCccccCcceEeeecCCCCCC
Q 012718 253 ---V-VD-------VQ----GLDADFLVASSHKMC-GPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFA 311 (458)
Q Consensus 253 ---~-~~-------~~----~~~~d~~~~s~~K~~-gp~g--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 311 (458)
+ .. +. ..+..+++.|+||.| |.+| +||+++ ++++++.+.....
T Consensus 259 ~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~---------------- 322 (407)
T PLN02368 259 DERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS---------------- 322 (407)
T ss_pred CCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc----------------
Confidence 1 11 11 122568888999976 7788 999995 6666665543211
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHH-------HH--hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-
Q 012718 312 DPPSRFEAGTPAIGEAIGLGAAIDYL-------ST--IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA- 381 (458)
Q Consensus 312 ~~~~~~~~gt~~~~~~~~l~~al~~~-------~~--~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~- 381 (458)
... +++...+.++.++++.- .. ....++.+.++++++.+.+.|++++|+.+..+. |+
T Consensus 323 -----~~~-~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~-------Gaf 389 (407)
T PLN02368 323 -----IAL-SPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTE-------GAM 389 (407)
T ss_pred -----ccC-CCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCC-------eee
Confidence 111 23433444444555311 00 013456788899999999999999999886654 54
Q ss_pred EEEEEeC
Q 012718 382 LCSFNVE 388 (458)
Q Consensus 382 ~v~~~~~ 388 (458)
++|.+++
T Consensus 390 y~~~~i~ 396 (407)
T PLN02368 390 YSFPQIK 396 (407)
T ss_pred EeccCCC
Confidence 5555444
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=197.95 Aligned_cols=320 Identities=14% Similarity=0.201 Sum_probs=217.6
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC----
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS---- 152 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~---- 152 (458)
|..++.+.+++.+.+..+.... .. . ..+..+.+++.++++.+.+ .++|++||++|+..++..+...
T Consensus 46 Gh~~p~v~~a~~~~~~~~~~~~-~~-~-----~~~~~~~~~~~l~~~~~~~---~~~~~~SGs~A~e~al~~~~~~~~~~ 115 (400)
T PTZ00125 46 GHCHPKILAALINQAQKLTLTS-RA-F-----YNDVLGLAEKYITDLFGYD---KVLPMNSGAEAGETALKFARKWGYEV 115 (400)
T ss_pred CcCCHHHHHHHHHHHHhccccc-cc-c-----cCHHHHHHHHHHHhCCCCC---EEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 3468889999999876532211 11 0 1346677888898888753 8899999999999999876310
Q ss_pred -CC-CCCCEEEEcCCCCccchHHHHHHHHHcCC---------eEEEEeCCCCCCCCHHHHHHhhc-CCceEEEEecccCc
Q 012718 153 -NL-KSGDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIHHISNM 220 (458)
Q Consensus 153 -~~-~~g~~vl~~~~~~~s~~~~~~~~a~~~g~---------~~~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~ 220 (458)
.+ ..+++|++.+.+||+.............. .+..++. .|++++++.+. +++++|+++.++|+
T Consensus 116 ~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~v~~ep~~~~ 190 (400)
T PTZ00125 116 KGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY-----NDVEALEKLLQDPNVAAFIVEPIQGE 190 (400)
T ss_pred cCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC-----CCHHHHHHHhCCCCeEEEEEcCccCC
Confidence 01 13578999999999875433322110000 0112221 38999999996 67899999999999
Q ss_pred Cccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCCC--ceeEEEEecccccc
Q 012718 221 LASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPT--GIGFLFGKSDLLSA 289 (458)
Q Consensus 221 tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp~--g~G~l~~~~~~~~~ 289 (458)
+|.+.| +++|.++|++||+++|+|++|. +|.. ..+.....+|+++ ++|.++++ .+|++++++++++.
T Consensus 191 ~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~--~sK~l~~g~~~ig~v~~~~~~~~~ 268 (400)
T PTZ00125 191 AGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVL--LGKALSGGLYPISAVLANDDVMLV 268 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEE--EcccccCCCcCcEEEEEcHHHHhh
Confidence 999998 9999999999999999999986 4321 1223344578776 56965543 48999999988776
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CC
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI----PN 365 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~----~~ 365 (458)
+.....+. ..+.+.....+..++++.+.+.+ +.++.+++.+++.+.|.++ +.
T Consensus 269 ~~~~~~~~---------------------t~~~~~~~~~aa~~~l~~i~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~ 324 (400)
T PTZ00125 269 IKPGEHGS---------------------TYGGNPLACAVAVEALEVLKEEK---LAENAQRLGEVFRDGLKELLKKSPW 324 (400)
T ss_pred ccCCCCCC---------------------CCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 65321100 11234445556667777776543 3455556666666666543 22
Q ss_pred EEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
+....+ .+.++++.++. ....++.+.|.++ ||.+.++. .+++||+++...+++|+++
T Consensus 325 ~~~~~~-------~g~~~~v~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------------~~~lRi~~~~~~~~~~i~~ 384 (400)
T PTZ00125 325 VKEIRG-------KGLLNAIVFDHSDGVNAWDLCLKLKEN-GLLAKPTH------------DNIIRFAPPLVITKEQLDQ 384 (400)
T ss_pred eEEEec-------ccEEEEEEEccCcchHHHHHHHHHHHC-CeEEeecC------------CCEEEEECCccCCHHHHHH
Confidence 222211 26677777753 3456788888888 99987653 5789999998899999999
Q ss_pred HHHHHHHHHHhhhcc
Q 012718 443 FIHALNETVSFFNVF 457 (458)
Q Consensus 443 l~~~l~~~~~~~~~~ 457 (458)
++++|.++++++.+.
T Consensus 385 ~l~~l~~~l~~~~~~ 399 (400)
T PTZ00125 385 ALEIIKKVLKSFDSN 399 (400)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887653
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=200.13 Aligned_cols=297 Identities=21% Similarity=0.213 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+.+++.+|++.|.+ ..++++|++.++.+++. + +++||+|+++++.|++....+.....+.|++++.++.
T Consensus 133 pt~~aLE~~lA~leg~e---~ai~~~SG~aAi~~il~-l----l~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~ 204 (464)
T PLN02509 133 PTRDALESLLAKLDKAD---RAFCFTSGMAALSAVTH-L----IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 204 (464)
T ss_pred HHHHHHHHHHHHHhCCC---EEEEeCcHHHHHHHHHH-H----hCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCC
Confidence 35677889999998865 56777788888876664 4 6899999999999997765555666778999998875
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+.....+ ..++|++++|++|
T Consensus 205 ~-----d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl-~~gaDivv~S~tK 278 (464)
T PLN02509 205 T-----NLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPL-ELGADIVMHSATK 278 (464)
T ss_pred C-----CHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChh-hcCCcEEEecCcc
Confidence 3 789999999999999999999999999999999999999999999999999887653222 4679999999999
Q ss_pred CCC-CCc--eeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 271 MCG-PTG--IGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 271 ~~g-p~g--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
+++ +.+ .|+++++++. .+.+..... ...+..+....+ ..+..++. ++...
T Consensus 279 ~l~G~gdv~gG~v~~~~~~l~~~~~~~~~---------------------~~g~~l~p~~A~---l~lr~L~t--L~~R~ 332 (464)
T PLN02509 279 FIAGHSDVMAGVLAVKGEKLAKEVYFLQN---------------------SEGSGLAPFDCW---LCLRGIKT--MALRI 332 (464)
T ss_pred cccCCCccceeEEEeccHHHHHHHHHHHH---------------------hcCCCcCHHHHH---HHHhhhhh--HHHHH
Confidence 665 454 7888876543 222221110 000112222222 23333333 35566
Q ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhh--cCeEeccCCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIR-IYGPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQ--YGVATRSGHHC 413 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~--~gi~~~~g~~~ 413 (458)
++..++++++.+.|+++|.++ +..|.-.. ....+++++|.+. +.+...+.+..- +.+.++-|...
T Consensus 333 ~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~--~~~~~~~f~~~l~l~~~a~slG~~~ 410 (464)
T PLN02509 333 EKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG--SVALSKHLVETTKYFSIAVSFGSVK 410 (464)
T ss_pred HHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeC--CHHHHHHHHHcCCcceEcccCCCCC
Confidence 777889999999999988774 44442110 1234679999883 333333333322 12223333311
Q ss_pred C------h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 414 A------Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 414 ~------~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+ . ......|. ++.||+|++. ||++.+++.|+++++.
T Consensus 411 SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGl----E~~~DLi~Dl~~Al~~ 461 (464)
T PLN02509 411 SLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFRT 461 (464)
T ss_pred ceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHcc
Confidence 1 0 11113343 5799999997 7888889888888753
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=197.99 Aligned_cols=317 Identities=16% Similarity=0.156 Sum_probs=208.5
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCC---
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSN--- 153 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~--- 153 (458)
++..+.+.+++.+.+....... .. ...+...++.+.++++.+.+ ++++++||++|+..+++.+....
T Consensus 54 G~~~p~v~~a~~~~~~~~~~~~---~~----~~~~~~~~la~~l~~~~~~~---~v~~~~gg~eA~~~al~~a~~~~~~~ 123 (396)
T PRK02627 54 GHCHPKLVEAIQEQAAKLIHTS---NL----YYIEPQEELAEKLVELSGMD---KVFFCNSGAEANEAAIKLARKYGHKK 123 (396)
T ss_pred CCCCHHHHHHHHHHHhhccccc---cc----cCCHHHHHHHHHHHhhcCCC---EEEECCCcHHHHHHHHHHHHHHhccc
Confidence 3445789999988876532111 10 01344556778888887653 99999999999999998652100
Q ss_pred CCCCCEEEEcCCCCccchHHHHHHHHHcCCeEE---EEeCCCCC----CCCHHHHHHhhcCCceEEEEecccCcCcc-cc
Q 012718 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK---FLNLNDDE----SPDLDKLKEMLSRKTKLVVIHHISNMLAS-IL 225 (458)
Q Consensus 154 ~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~---~v~~~~~~----~~d~~~l~~~l~~~~~~v~~~~~~n~tG~-~~ 225 (458)
..+.++|++.++.|++........ .+.... ..+...+. ..|++++++.+.+++++|+++.++|++|. .+
T Consensus 124 ~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~ 200 (396)
T PRK02627 124 GIEKPEIITAENSFHGRTLATLSA---TGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPA 200 (396)
T ss_pred CCCCCeEEEECCCcCcccHHHHHh---cCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccC
Confidence 011278999999998664322221 111111 11111111 12889999999888999999999999994 44
Q ss_pred c---HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccc
Q 012718 226 P---IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 226 ~---l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~ 295 (458)
| +++|.++|+++|+++|+|++|+ ++.. ..+.....+|++ +++|.++ .| +|++++++++++.+.....
T Consensus 201 ~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~~~-~G~rig~~~~~~~~~~~~~~~~~ 277 (396)
T PRK02627 201 DKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIM--TLAKGLG-GGVPIGAVLAKEKVADVFTPGDH 277 (396)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEE--EEcchhh-CCcccEEEEEcHHHHhccCCCCC
Confidence 4 8899999999999999999988 3321 111223346755 5889777 34 9999999887766643211
Q ss_pred cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc----CCCEEEeCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS----IPNIRIYGP 371 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~----~~~~~~~~~ 371 (458)
....+.+.....++.++++.+... ...++.+++.+++.+.|.+ .+.+...
T Consensus 278 ---------------------~~t~~~~~~~~~aa~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 331 (396)
T PRK02627 278 ---------------------GSTFGGNPLACAAALAVIEIIEEE---GLLENAAEVGEYLRAKLRELLEKYPGIKEV-- 331 (396)
T ss_pred ---------------------CCCCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeeee--
Confidence 011234555666666777766542 3445555555555555543 3222211
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
. ..+.++++.++ .+..++.+.+.++ ||.+.++. .+++|+++++..+++++++++++|++++
T Consensus 332 ~-----~~g~~~~i~~~-~~~~~~~~~l~~~-Gv~v~~~~------------~~~lRi~~~~~~~~~~i~~~~~~l~~~l 392 (396)
T PRK02627 332 R-----GLGLMIGIELD-RPAAEIVKKALEK-GLLINVTG------------DNVLRLLPPLIISKEEIDEAVDRLEEVL 392 (396)
T ss_pred c-----cCcEEEEEEec-CcHHHHHHHHHHC-CeEEeecC------------CCEEEEECCcccCHHHHHHHHHHHHHHH
Confidence 1 22668888873 3577899999988 99998753 4689999987789999999999999998
Q ss_pred Hhh
Q 012718 452 SFF 454 (458)
Q Consensus 452 ~~~ 454 (458)
+++
T Consensus 393 ~~~ 395 (396)
T PRK02627 393 KEL 395 (396)
T ss_pred Hhh
Confidence 754
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-22 Score=193.77 Aligned_cols=347 Identities=17% Similarity=0.179 Sum_probs=226.8
Q ss_pred cccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeC
Q 012718 57 ILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK 136 (458)
Q Consensus 57 ~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~ 136 (458)
.+....+ ..+.+|+++.+.++.++++.+++.+++..+. +.... .........++.+++.+++++|++ ..++++
T Consensus 77 ~lr~vin-atg~v~~tNlg~s~l~~~v~eav~~~~~~~~-~le~~--l~~g~~g~r~~~~e~~lA~l~Gae---~a~vv~ 149 (464)
T PRK04311 77 SLRPVIN-ATGVVLHTNLGRALLSEAAIEAVTEAARGYS-NLEYD--LATGKRGSRDRALAALLCALTGAE---DALVVN 149 (464)
T ss_pred CCcceec-CCccEEeccCCCCCCCHHHHHHHHHHHhccc-ccccc--hhhcccchHHHHHHHHHHHHhCCC---eEEEEC
Confidence 3433344 4677778877889999999999999876532 21111 100112344678999999999987 567888
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccc--hHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEE
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSA--IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVI 214 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~--~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~ 214 (458)
|++.|+.+++.++ .+||+|++++.+|.+. ...+....+..|++++.++.+ +..++++++++++++|++|++
T Consensus 150 sgtaAl~l~l~~l-----~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~~~TklV~~ 222 (464)
T PRK04311 150 NNAAAVLLALNAL-----AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAINENTALLLK 222 (464)
T ss_pred CHHHHHHHHHHHh-----CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcCccCeEEEE
Confidence 8999999988754 6899999999876622 223444567789999998754 334789999999999999999
Q ss_pred ecccCc--Cc--ccccHHHHHHHHHhcCcEEEEeccccC---------CcccC--CCCCCCCcEEEecccCCCCCCceeE
Q 012718 215 HHISNM--LA--SILPIEEIVHWSHDVGAKVLVDACQSV---------PHMVV--DVQGLDADFLVASSHKMCGPTGIGF 279 (458)
Q Consensus 215 ~~~~n~--tG--~~~~l~~i~~l~~~~~~~vivD~a~~~---------g~~~~--~~~~~~~d~~~~s~~K~~gp~g~G~ 279 (458)
.+++|+ +| ...|+++|+++||+||+++++|.+++. +..|. +..+.|+|++++|++|++|++.+|+
T Consensus 223 vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~ 302 (464)
T PRK04311 223 VHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGI 302 (464)
T ss_pred EcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEE
Confidence 999998 34 678999999999999999999995431 12221 2234789999999999776556999
Q ss_pred EEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH-----h---C---HHHHHHH
Q 012718 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-----I---G---MQKIHAY 348 (458)
Q Consensus 280 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~-----~---g---~~~~~~~ 348 (458)
+++++++++.++.... .+.+ ..+-..+.++.+.+..... . + +..-.++
T Consensus 303 i~g~~~li~~l~~~~~------------------~r~l---r~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~ 361 (464)
T PRK04311 303 IVGKKELIARLKKHPL------------------KRAL---RVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEE 361 (464)
T ss_pred EEEcHHHHHHHhhchh------------------HHHH---hcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHH
Confidence 9999988876652110 0001 0111233445555542211 0 0 1111244
Q ss_pred HHHHHHHHHHHHhcCC--C--EEEeCCC-----CCCcCccccEEEEEe--CCCChHHHHHHHhhh-cCeEeccCCCCChh
Q 012718 349 EMELAKYLYENLLSIP--N--IRIYGPK-----PSEHVQRAALCSFNV--ENIHPTDIATLLDQQ-YGVATRSGHHCAQP 416 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~--~--~~~~~~~-----~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~-~gi~~~~g~~~~~~ 416 (458)
..++++.+.+.|...+ + +++.... +..+....+-+.+.+ .+.+..++.+.|++- -.|+.+..
T Consensus 362 ~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~~------ 435 (464)
T PRK04311 362 LRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGRIE------ 435 (464)
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEEE------
Confidence 4456666666666543 2 3444320 011122344444444 355788999999863 13555421
Q ss_pred hHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 417 LHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 417 ~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++.+.+-+-. ..++|++.+++.|.+++.
T Consensus 436 -------~~~~~ld~r~-~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 436 -------DGRLLLDLRT-LEEEDEERLAAALLEALN 463 (464)
T ss_pred -------CCEEEEEeCc-CCHHHHHHHHHHHHHHhh
Confidence 5667777664 577899999999998764
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-22 Score=192.01 Aligned_cols=319 Identities=16% Similarity=0.195 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+++++.+++++|.+ ++++++|+|+|+.+++.++ .+++||+|+++.++|.+.. ..+...|++++.+++
T Consensus 31 ~~~~~~e~~la~~~g~~---~~v~~~sgt~al~~~l~~~---~~~~Gd~Viv~~~t~~~~~----~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 31 GFTRRCQQWLEQRFGSA---KVLLTPSCTAALEMAALLL---DIQPGDEVIMPSYTFVSTA----NAFVLRGAKIVFVDI 100 (375)
T ss_pred HHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHh---CCCCCCEEEECCCCcHHHH----HHHHHcCCEEEEEec
Confidence 34556778899999885 8999999999999988766 3789999999999999664 445567999999999
Q ss_pred CCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCC--CcEEEec
Q 012718 191 NDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD--ADFLVAS 267 (458)
Q Consensus 191 ~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~--~d~~~~s 267 (458)
+++ +.+|++++++.+++++++|++++ ++|...++++|.++|+++|++||+|++|++|.. .+-...+ .|+-++|
T Consensus 101 d~~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~-~~~~~~g~~~~~~~~S 176 (375)
T PRK11706 101 RPDTMNIDETLIEAAITPKTRAIVPVH---YAGVACEMDTIMALAKKHNLFVVEDAAQGVMST-YKGRALGTIGHIGCFS 176 (375)
T ss_pred CCCcCCcCHHHHHHhcCCCCeEEEEeC---CCCCccCHHHHHHHHHHcCCEEEEECccccccc-cCCeeeecCcCEEEEe
Confidence 876 47899999999998999988764 599999999999999999999999999998874 2211112 4788888
Q ss_pred cc--CCCCCCceeEEEE-eccccccCCCccccCcceEeeecCC-CCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 268 SH--KMCGPTGIGFLFG-KSDLLSAMPPFLGGGEMISDVFLDH-STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 268 ~~--K~~gp~g~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
+| |.++++..|+++. ++++.+++..+...+......+... ..+ .....|+.....-+.+...+..++. ++
T Consensus 177 f~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~aa~~~~ql~~--l~ 250 (375)
T PRK11706 177 FHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKY----TWVDIGSSYLPSELQAAYLWAQLEA--AD 250 (375)
T ss_pred CCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcc----eeeecccccCcCHHHHHHHHHHHHH--HH
Confidence 88 9776533444444 4566655554432221100000000 000 0011223222222223333444444 67
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC---EEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCC--Chhh
Q 012718 344 KIHAYEMELAKYLYENLLSIPN---IRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHC--AQPL 417 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~--~~~~ 417 (458)
++.++.+++.+++.+.|.++++ +++...++. ......++++.++ +.+..++.+.|.++ ||.++....+ ..+.
T Consensus 251 ~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~l~~~L~~~-gI~~~~~~~p~~~~~~ 328 (375)
T PRK11706 251 RINQRRLALWQRYYDALAPLAEAGRIELPSIPDD-CKHNAHMFYIKLRDLEDRSALINFLKEA-GIMAVFHYIPLHSSPA 328 (375)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCC-CceeeEEEEEEECCcCCHHHHHHHHHHC-CCCccccCCccCcchh
Confidence 7888888999999999988752 443221211 0111235566665 35688999999998 9987643210 0111
Q ss_pred HhhcC----C--------CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 418 HRYLG----V--------NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 418 ~~~~g----~--------~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+..++ . ...+-+-++...+.+|++++++.|++++
T Consensus 329 ~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 329 GERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred hHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 11111 0 4567777777789999999999999865
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=197.58 Aligned_cols=300 Identities=21% Similarity=0.244 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 109 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
..+....+++.|+++-|.. .++++++|..|+..++.++ +++||.|+++...|.++...+.....+.|+++..+
T Consensus 53 gnPt~~~le~~la~Le~g~---~a~~~~SGmaAi~~~l~~l----l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~ 125 (386)
T PF01053_consen 53 GNPTVRALEQRLAALEGGE---DALLFSSGMAAISAALLAL----LKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFV 125 (386)
T ss_dssp C-HHHHHHHHHHHHHHT-S---EEEEESSHHHHHHHHHHHH----S-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEE
T ss_pred ccccHHHHHHHHHHhhccc---ceeeccchHHHHHHHHHhh----cccCCceEecCCccCcchhhhhhhhcccCcEEEEe
Confidence 3455667779999999885 7888999999999999988 78999999999999998877777778899999999
Q ss_pred eCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcC-cEEEEeccccCCcccCCCCCCCCcEEEec
Q 012718 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG-AKVLVDACQSVPHMVVDVQGLDADFLVAS 267 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~-~~vivD~a~~~g~~~~~~~~~~~d~~~~s 267 (458)
+.. |++++++++++++++|+++.|+||+..+.|+++|+++||++| ++++||.+.+.+.. .+.-++|+|+++.|
T Consensus 126 d~~-----d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~-~~pL~~GaDivv~S 199 (386)
T PF01053_consen 126 DPT-----DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYN-QNPLELGADIVVHS 199 (386)
T ss_dssp STT-----SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTT-C-GGGGT-SEEEEE
T ss_pred Cch-----hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceee-eccCcCCceEEEee
Confidence 875 899999999999999999999999999999999999999998 99999999987754 33335679999999
Q ss_pred ccCCCCCCc---eeEEEEec--cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 268 SHKMCGPTG---IGFLFGKS--DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 268 ~~K~~gp~g---~G~l~~~~--~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
.+|++++.+ .|.++++. ++.+.+...... ...+.+......+...++. +
T Consensus 200 ~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~---------------------~G~~~~p~da~ll~rgl~T-----l 253 (386)
T PF01053_consen 200 ATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRL---------------------LGATLSPFDAWLLLRGLRT-----L 253 (386)
T ss_dssp TTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHH---------------------HT-B--HHHHHHHHHHHTT-----H
T ss_pred ccccccCCcceeeEEEEECchhhhhhhhcchhhh---------------------cCccchHHHHHHHhcCCCc-----H
Confidence 999888777 78888776 444444322110 0122333222333222222 4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCCC--hHHHHHHHhhhcCeEecc
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENIH--PTDIATLLDQQYGVATRS 409 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~--~~~~~~~l~~~~gi~~~~ 409 (458)
....++..+++..+.+.|++.|.++ +..|.-..+ ...+++++|.+.+.. ...+.+.|.- +.+..+-
T Consensus 254 ~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l-~~~~~Sl 332 (386)
T PF01053_consen 254 PLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKL-FSIAPSL 332 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SS-SEESSS-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhh-Hhhhhhc
Confidence 4455667788899999999998776 544421111 244679999998632 2333333331 1222222
Q ss_pred CCCCC------hh--------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 410 GHHCA------QP--------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 410 g~~~~------~~--------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
|...+ .. .....|. ++.||+|++. ||++.+++.|+++++
T Consensus 333 Gg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 333 GGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL----EDPDDLIADLEQALE 386 (386)
T ss_dssp SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S----S-HHHHHHHHHHHHH
T ss_pred CCcccccccccchhhccCChhhhhccCCCCCeeEEEecc----CCHHHHHHHHHHhcC
Confidence 33211 11 1123344 6799999998 889999999988874
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-22 Score=192.52 Aligned_cols=344 Identities=17% Similarity=0.204 Sum_probs=219.7
Q ss_pred CCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 012718 54 DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV 133 (458)
Q Consensus 54 ~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~ 133 (458)
..|.+....+ ..+.+|+++.+.++.++++.+++.+++..+. +.... .. .......++.+++.+++++|++ ..+
T Consensus 69 ~~~~lr~vin-atg~v~~tNlg~s~l~~~vieAv~~~~~~y~-~l~~~-l~-~g~~g~r~~~le~~lA~l~gae---~al 141 (454)
T TIGR00474 69 LRPSLRRVIN-ATGVVLHTNLGRAPLAEEAIEAVTDAARGYS-NLEYD-LE-TGKRGSRYSHVEGLLCELTGAE---DAL 141 (454)
T ss_pred ccccccceeC-CCCcEEeccCCCCCCCHHHHHHHHHHHhccc-chhcc-cc-ccccchHHHHHHHHHHHHhCCC---cEE
Confidence 3455544444 4677888888888999999999999987542 22111 00 1112345678999999999997 345
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCc--cchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceE
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHH--SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKL 211 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~--s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 211 (458)
+++|++.|+.+++.++ .+||+|++++.+|. +....+....+..|++++.++.+ +..|+++++++++++|++
T Consensus 142 vv~sg~aAi~l~l~~l-----~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~T~l 214 (454)
T TIGR00474 142 VVNNNAAAVLLALNTL-----AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITENTAL 214 (454)
T ss_pred EECCHHHHHHHHHHHh-----CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcCCEE
Confidence 6778888999888654 68999999998753 11112344567789999998754 334889999999999999
Q ss_pred EEEecccCcC--c--ccccHHHHHHHHHhcCcEEEEecccc---------CCcccC--CCCCCCCcEEEecccCCCCCCc
Q 012718 212 VVIHHISNML--A--SILPIEEIVHWSHDVGAKVLVDACQS---------VPHMVV--DVQGLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 212 v~~~~~~n~t--G--~~~~l~~i~~l~~~~~~~vivD~a~~---------~g~~~~--~~~~~~~d~~~~s~~K~~gp~g 276 (458)
|++.+++|++ | ...|+++|+++||++|+++++|.+.+ .+..|. +..+.|+|++++|+||++|++.
T Consensus 215 v~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~ 294 (454)
T TIGR00474 215 LLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ 294 (454)
T ss_pred EEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe
Confidence 9999999984 6 57899999999999999999998633 222222 3456789999999999776546
Q ss_pred eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH--------hCHH---HH
Q 012718 277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST--------IGMQ---KI 345 (458)
Q Consensus 277 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~--------~g~~---~~ 345 (458)
.|+++++++.++.++..-. .+.+. .+-..++++...+..... .++. .-
T Consensus 295 ~G~i~g~~~~i~~l~~~~l------------------~r~lr---~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~ 353 (454)
T TIGR00474 295 AGIIVGKKELIERLKKNPL------------------TRALR---VDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQS 353 (454)
T ss_pred EEEEEECHHHHHhhhhchh------------------HHHHh---hChHHHHHHHHHHHHHhCchhhhhhchHHHHhccC
Confidence 8999999988766552110 00011 011112233333322211 0111 11
Q ss_pred HHHHHHHHHHHHHHHhcC--CCE--EEeCCC-----CCCcCccccEEEEEe--CCCChHHHHHHHhhhcC--eEeccCCC
Q 012718 346 HAYEMELAKYLYENLLSI--PNI--RIYGPK-----PSEHVQRAALCSFNV--ENIHPTDIATLLDQQYG--VATRSGHH 412 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~--~~~--~~~~~~-----~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~~g--i~~~~g~~ 412 (458)
.++..+.+..+.+.|++. +++ ++.... +..+....+-+.+.+ .+.+..++.+.|++. . |+.+..
T Consensus 354 ~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~-~~~ii~r~~-- 430 (454)
T TIGR00474 354 PEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLREL-PPPIIGRIE-- 430 (454)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHhcC-CCCEEEEEE--
Confidence 123344555566666543 333 333322 011123334344444 456788999999865 4 444321
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
++.+.+-+.. ..++|++.+++.|
T Consensus 431 -----------~~~~~ld~r~-~~~~~~~~~~~~~ 453 (454)
T TIGR00474 431 -----------DDRFLLDLRT-LLEDEEELLIEAL 453 (454)
T ss_pred -----------CCEEEEEeCc-CCHHHHHHHHHHh
Confidence 4567776654 5678998888775
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=202.84 Aligned_cols=328 Identities=13% Similarity=0.084 Sum_probs=206.7
Q ss_pred CCeEEecCCC-CCC-CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC-----CCcE--EEeC
Q 012718 66 KKLVYLDNAA-TSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-----SGEI--VFTK 136 (458)
Q Consensus 66 ~~~i~l~~~~-~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-----~~~v--~~t~ 136 (458)
...+.|..+. ..+ .++.+.+++.+...... .. + ...++....+..++|+++++++.... ++.| +.+.
T Consensus 48 ~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~-~~--~-~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~ 123 (423)
T PLN02397 48 PVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLL-AG--S-RNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCL 123 (423)
T ss_pred cceEecccceeeCCCCCcccchHHHHHHHHhh-cc--C-CCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecc
Confidence 4456666664 232 33344455555533221 00 0 11122335567789999999774331 1133 1133
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-C-CCCCCHHHHHHhhc---CCceE
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-D-DESPDLDKLKEMLS---RKTKL 211 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~-~~~~d~~~l~~~l~---~~~~~ 211 (458)
+++.+..+++..+. .+.+||+|++++|+|+ .+...++..|++++.+++. + ++.+|++.+++.+. +++++
T Consensus 124 ~g~Ga~~l~~~~~~--~~~pGd~Vlv~~P~y~----~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~ 197 (423)
T PLN02397 124 SGTGSLRLGAEFLA--RFYPGSTIYIPNPTWG----NHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFV 197 (423)
T ss_pred cchHHHHHHHHHHH--HhCCCCEEEEeCCCch----hHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEE
Confidence 33334332222221 1469999999999999 4466677789999999973 2 46789998887775 46789
Q ss_pred EEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc--------cC-CCCCC-CCcEEEecccCCCCCCc--
Q 012718 212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------VV-DVQGL-DADFLVASSHKMCGPTG-- 276 (458)
Q Consensus 212 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~--------~~-~~~~~-~~d~~~~s~~K~~gp~g-- 276 (458)
+++++++||||.+++ +++|+++|++||++||+|++|..-.. ++ .+... ...++++|+||.++++|
T Consensus 198 i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~R 277 (423)
T PLN02397 198 LLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGER 277 (423)
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCcccc
Confidence 999999999999999 66788899999999999999872211 11 11111 23578889999999888
Q ss_pred eeEEE--E-ecccccc----CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH---HHHh--CHHH
Q 012718 277 IGFLF--G-KSDLLSA----MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY---LSTI--GMQK 344 (458)
Q Consensus 277 ~G~l~--~-~~~~~~~----l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~--g~~~ 344 (458)
+||++ . +++.++. +..... ....+++.....++..+|+. ...+ .++.
T Consensus 278 vG~~v~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~ 336 (423)
T PLN02397 278 VGALSVVCKSADVAVRVKSQLKLIAR---------------------PMYSNPPIHGASIVATILGDPELFSEWTKELKG 336 (423)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHh---------------------cccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99986 3 3333222 111110 00112333233333333321 1111 1467
Q ss_pred HHHHHHHHHHHHHHHHhcCCC----EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhh
Q 012718 345 IHAYEMELAKYLYENLLSIPN----IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRY 420 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~ 420 (458)
.++++++.++.+.+.|+++ + +++..+. .+.++|++++ .++++.|.+++||.+.+
T Consensus 337 ~~~~~~~rr~~l~~~L~~~-~~~~~~~~~~p~------gg~fl~~~l~----~~~~~~Ll~~~~V~v~~----------- 394 (423)
T PLN02397 337 MADRIISMRQKLYDALEAR-GSPGDWSHITKQ------IGMFSFTGLN----KEQVDRMTKEYHIYMTR----------- 394 (423)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCCCcccCC------ceEEEecCCC----HHHHHHHHHhCCEEECC-----------
Confidence 7889999999999999987 4 5544443 1557777764 45888887777999852
Q ss_pred cCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 421 LGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 421 ~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
.+ |+++.. .+.+++++++++|.++++
T Consensus 395 ---~~--Ri~~~~-~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 395 ---DG--RISMAG-LSSKNVPYLADAIHAVVT 420 (423)
T ss_pred ---CC--eEEEee-CCHHHHHHHHHHHHHHHh
Confidence 22 999964 688999999999999985
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-22 Score=182.87 Aligned_cols=334 Identities=16% Similarity=0.188 Sum_probs=235.8
Q ss_pred CCeEEecC------CCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDN------AATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|. ...|-..+.+.+++.+..+++..-.+ .+ ..+...++-+.|++..+ .. +.|+|++||+
T Consensus 40 ~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn--~~-----~~~~~~~la~~L~~~s~-~~-d~vff~NSGa 110 (404)
T COG4992 40 QGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSN--LF-----YNEPQAELAEKLVELSP-FA-DRVFFCNSGA 110 (404)
T ss_pred CCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhccc--cc-----CChHHHHHHHHHHhhCc-cc-cEEEEcCCcH
Confidence 44455552 23556889999999998877533221 11 13444567777888886 33 3999999999
Q ss_pred HHHHHHHHHcCCCCC-CCCCEEEEcCCCCccchHHHHHHHH----HcCC-----eEEEEeCCCCCCCCHHHHHHhhcCCc
Q 012718 140 EAINLVAYSWGLSNL-KSGDEVILTVAEHHSAIVPWQLVAQ----KTGA-----NLKFLNLNDDESPDLDKLKEMLSRKT 209 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~-~~g~~vl~~~~~~~s~~~~~~~~a~----~~g~-----~~~~v~~~~~~~~d~~~l~~~l~~~~ 209 (458)
+|++.++...+.... ..+.+|+....+||+-+.....+.. +.+. .++.+|.. |+++++++++++|
T Consensus 111 EA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~~t 185 (404)
T COG4992 111 EANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-----DIEALEAAIDEDT 185 (404)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-----CHHHHHHHhccCe
Confidence 999999997753222 2255899999999976543222210 0011 13344433 9999999999999
Q ss_pred eEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CC---cc-cCCCCCCCCcEEEecccC-CCCCCceeE
Q 012718 210 KLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VP---HM-VVDVQGLDADFLVASSHK-MCGPTGIGF 279 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g---~~-~~~~~~~~~d~~~~s~~K-~~gp~g~G~ 279 (458)
.+|+++.++...|.+.+ ++++.++|++||+++|.|++|. +| .+ -.......+|+++ ..| +.|+..+|.
T Consensus 186 aAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~t--laK~LgGG~PigA 263 (404)
T COG4992 186 AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT--LAKALGGGFPIGA 263 (404)
T ss_pred EEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEE--eeccccCCcccee
Confidence 99999999999999998 8899999999999999999998 22 22 1122244589988 779 545566999
Q ss_pred EEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 280 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++.++...+.+.+-.+|.+ -..|+...++..++++.+.+ +.+.++.+++.++|.+.
T Consensus 264 ~la~~~~~~~~~~G~HgST---------------------fGGNpLacAv~~a~l~~l~~---e~ll~~v~~~g~~~~~~ 319 (404)
T COG4992 264 MLATEEIASAFTPGDHGST---------------------FGGNPLACAVALAVLEVLLE---EGLLENVREKGEYLLQR 319 (404)
T ss_pred eEEchhhhhcCCCCcccCC---------------------CCcCHHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHH
Confidence 9998655555665544322 13566666777777887776 56667777788888888
Q ss_pred HhcCC-CEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCH
Q 012718 360 LLSIP-NIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437 (458)
Q Consensus 360 L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~ 437 (458)
|.++. .+.+.... ..+|-++-+.+... ...++++.+.++ |+.+.+.. ++.+|+.+++-.++
T Consensus 320 L~~l~~~~~~v~~v----RG~GLmiGiel~~~~~a~~~~~~~~~~-gvL~~~a~------------~~ViR~~PpL~i~~ 382 (404)
T COG4992 320 LRELKRRYPLVKEV----RGRGLMIGIELKEPYRARDIVRALREE-GVLVLPAG------------PNVIRFLPPLVITE 382 (404)
T ss_pred HHHHhhcCCceeee----ecceeEEEEEecCcccHHHHHHHHHHC-CeEEecCC------------CCeEEecCCccCCH
Confidence 87651 22222222 23466888888653 478999999999 99886543 67999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 012718 438 EDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 438 ~di~~l~~~l~~~~~~~~~ 456 (458)
+|+++.+++++++++....
T Consensus 383 eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 383 EEIDEALDALERALAAASA 401 (404)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999986543
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-21 Score=190.10 Aligned_cols=323 Identities=17% Similarity=0.156 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCC-----CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEE
Q 012718 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGL-----SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF 187 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~-----~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~ 187 (458)
..++++.+++++|.+ ++++++|||+|+.+++.++.. ..+++||+|+++.++|.+...++ ...|++++.
T Consensus 65 ~~~fe~~lA~~~g~~---~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v----~~~G~~pv~ 137 (438)
T PRK15407 65 NDAFEKKLAEFLGVR---YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPI----IQNGLVPVF 137 (438)
T ss_pred HHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHH----HHcCCEEEE
Confidence 557889999999986 789999999999999987621 13688999999999999765444 456999999
Q ss_pred EeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC--CCCCCCcEE
Q 012718 188 LNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD--VQGLDADFL 264 (458)
Q Consensus 188 v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~--~~~~~~d~~ 264 (458)
++++. ++.+|++.+++.+++++++|+++++ +|...++++|.++|+++|++||+|++|++|+..-+ ...+| |+.
T Consensus 138 vdvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~ 213 (438)
T PRK15407 138 VDVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DIA 213 (438)
T ss_pred EecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ceE
Confidence 99874 5788999999999999999999885 78888999999999999999999999999987433 33444 888
Q ss_pred Eeccc--CCCC-CCceeEEEEeccccccCCCccccCcceEe------ee----cC-----C-CCCCCCCCccCCCCCCHH
Q 012718 265 VASSH--KMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISD------VF----LD-----H-STFADPPSRFEAGTPAIG 325 (458)
Q Consensus 265 ~~s~~--K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~------~~----~~-----~-~~~~~~~~~~~~gt~~~~ 325 (458)
++|++ |.+. +. .|+++.+++.+...-....+++.... .. .. . ..+...-.....|...-.
T Consensus 214 ~fSf~~~k~~~~ge-GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rm 292 (438)
T PRK15407 214 TLSFYPAHHITMGE-GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKI 292 (438)
T ss_pred EEeCCCCCCccccC-ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCc
Confidence 88887 5333 44 49999887544322212222221100 00 00 0 000000000011211111
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCCCCCcCcccc-EEEEEeC---CCChHHHHHHHh
Q 012718 326 EAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI-RIYGPKPSEHVQRAA-LCSFNVE---NIHPTDIATLLD 400 (458)
Q Consensus 326 ~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~-~v~~~~~---~~~~~~~~~~l~ 400 (458)
.-+.++.++..+.. ++.+.++.+++++++.+.|..+++. .+...++. ..+.. .+.+.++ +.+.+++.+.|.
T Consensus 293 sel~AAig~~qL~~--l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~Rd~l~~~L~ 368 (438)
T PRK15407 293 TDMQAAIGLAQLEK--LPGFIEARKANFAYLKEGLASLEDFLILPEATPN--SDPSWFGFPITVKEDAGFTRVELVKYLE 368 (438)
T ss_pred cHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccCCCccccCcCCCC--CeeEEEEEEEEECCcCCCCHHHHHHHHH
Confidence 12233344455555 6788888899999999999887653 22222211 11111 3334443 346789999999
Q ss_pred hhcCeEeccCCC---CChhhHhhc--C----C-------CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 401 QQYGVATRSGHH---CAQPLHRYL--G----V-------NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 401 ~~~gi~~~~g~~---~~~~~~~~~--g----~-------~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++ ||.++.... ...+.+... . . ...+-+-++...+++|++++++.|+++++
T Consensus 369 ~~-GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 369 EN-KIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred HC-CCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 98 997753211 111121111 0 0 34566666666799999999999999875
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=181.44 Aligned_cols=355 Identities=16% Similarity=0.190 Sum_probs=254.0
Q ss_pred hcCCCCcccccccC--CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC
Q 012718 51 TRPDFPILHQEVYG--SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS 127 (458)
Q Consensus 51 ~r~~f~~~~~~~~~--~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~ 127 (458)
+.++||+....... .+--++..+...+ ..-+.+.+++.+.++....... .-.--.+......++++.||++.+.+
T Consensus 155 lA~~fP~A~~~se~t~k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAG--GTRNIsG~s~~hv~LE~eLA~LHqK~ 232 (570)
T KOG1360|consen 155 LAKEFPLAHRYSEATEKKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAG--GTRNISGHSKHHVRLEAELADLHQKE 232 (570)
T ss_pred hhhhccchhhccccccCceEEEecCccccccCChHHHHHHHHHHHHcCCCcC--CccccCCCCchhhhHHHHHHHHhcCc
Confidence 34678876554432 2334677776666 5667899999999988644321 11111123445567889999999877
Q ss_pred CCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC
Q 012718 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR 207 (458)
Q Consensus 128 ~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 207 (458)
. .++|++ +--|+...+..|+ ..-||-.|+.....|.|.+.+++. .++.-.....+ |++.|++++.+
T Consensus 233 a--ALlFsS-CfVANDstLftLa--k~lpgcei~SD~gNHASMI~GIrn----s~v~K~IFrHN-----D~~hL~~lL~~ 298 (570)
T KOG1360|consen 233 A--ALLFSS-CFVANDSTLFTLA--KKLPGCEIFSDEGNHASMIQGIRN----SRVPKHIFRHN-----DLDHLEQLLQS 298 (570)
T ss_pred c--eeeeee-eeeccchHHHHHH--HHCCCcEEeccccchHHHHHHhhh----cCCcceeeccC-----CHHHHHHHHHh
Confidence 4 445443 3445555555554 245787777777778776655443 25544444444 88999988865
Q ss_pred ----CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC---CCC-----CCCcEEEecccCCCCCC
Q 012718 208 ----KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD---VQG-----LDADFLVASSHKMCGPT 275 (458)
Q Consensus 208 ----~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~---~~~-----~~~d~~~~s~~K~~gp~ 275 (458)
.+++|.++.+++++|.+.|+++|.+++++||++.++|++|++|..... +.+ ...|++.+++.|.||--
T Consensus 299 ~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcV 378 (570)
T KOG1360|consen 299 SPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCV 378 (570)
T ss_pred CCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhcccc
Confidence 469999999999999999999999999999999999999997654211 111 13899999999998866
Q ss_pred ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 276 GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 276 g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
| |++.....+++.++.+..|+. |+. +.++.-+.++..+++.++...-..++...+++.++
T Consensus 379 G-GYIAat~~LvDmiRSyAaGFI------------------FTT-SLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~ 438 (570)
T KOG1360|consen 379 G-GYIAATRKLVDMIRSYAAGFI------------------FTT-SLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKY 438 (570)
T ss_pred c-ceehhhhhHHHHHHHhcCceE------------------Eec-CCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3 899999988888776665443 333 34444555666777777664335566667788999
Q ss_pred HHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC
Q 012718 356 LYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY 434 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~ 434 (458)
+++.|.+. |+.+...+ +-++.+++-+. ...++++.|..++||++....+...+. ....+||.+.+.
T Consensus 439 ~kq~l~~~-GiPVi~~p-------SHIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~r-----G~E~LRiaPTP~ 505 (570)
T KOG1360|consen 439 VKQLLMEL-GIPVIPNP-------SHIIPVRVGDAALAKQASDILISKHNIYVQAINYPTVAR-----GTERLRIAPTPH 505 (570)
T ss_pred HHHHHHHc-CCcccCCC-------cceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccc-----cceeeecCCCCC
Confidence 99999888 88877665 66888887642 356788889888899998777665542 267899999999
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 012718 435 NTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 435 ~t~~di~~l~~~l~~~~~~~ 454 (458)
+|++-++.+++.|.++.+++
T Consensus 506 HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 506 HTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred CCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999998765
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=189.87 Aligned_cols=311 Identities=15% Similarity=0.161 Sum_probs=204.3
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.|..++.+.+++.+.++...... .. ...+..+++.+.+++..+. +.+++++||++|+..++.... ...
T Consensus 43 lG~~~p~v~~a~~~~~~~~~~~~-~~------~~~~~~~~la~~l~~~~~~---~~~~~~~sG~~a~~~A~~~a~--~~~ 110 (377)
T PRK02936 43 LGHCHPTVTKAVQEQLDDIWHVS-NL------FTNSLQEEVASLLAENSAG---DLVFFCNSGAEANEAALKLAR--KHT 110 (377)
T ss_pred CCCCCHHHHHHHHHHHHhccccc-cc------cCCHHHHHHHHHHHhcCCC---CEEEEeCCcHHHHHHHHHHHH--Hhc
Confidence 45678899999999987632111 00 0122333444445444432 379999999999999998542 123
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCC---------eEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccccc
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~---------~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~ 226 (458)
.+++|++.++.||+.............. .+..++.+ |++.+++.+.+++++|+++.+++++|...+
T Consensus 111 g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~ 185 (377)
T PRK02936 111 GKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFN-----DIKALKEVMNEEVAAVMLEVVQGEGGVIPA 185 (377)
T ss_pred CCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCC-----CHHHHHHhccCCeEEEEEecccCCCCCccC
Confidence 4567999999999775443332110000 11222222 789999999888999999999999887754
Q ss_pred ----HHHHHHHHHhcCcEEEEecccc-CCcc--cCC--CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccc
Q 012718 227 ----IEEIVHWSHDVGAKVLVDACQS-VPHM--VVD--VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 227 ----l~~i~~l~~~~~~~vivD~a~~-~g~~--~~~--~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~ 295 (458)
+++|.++|++||+++|+|++|. +|.. ++. .....+|++ +++|.++ .| +|+++.++++.+.+.....
T Consensus 186 ~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~-~G~~ig~v~~~~~~~~~~~~~~~ 262 (377)
T PRK02936 186 DPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAKGLG-NGIPVGAMIGKKELGTAFGPGSH 262 (377)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEE--EEccccc-CCCccEEEEEcHHHHhhccCCCC
Confidence 8999999999999999999986 2211 111 112346755 5899777 34 8999999887666543211
Q ss_pred cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc----CCCEEEeCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS----IPNIRIYGP 371 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~----~~~~~~~~~ 371 (458)
....+.+...+.++.++++.+.. +...++++++.+++.+.|++ ++.+.....
T Consensus 263 ---------------------~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 318 (377)
T PRK02936 263 ---------------------GSTFGGNPLAMAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECVKNIRG 318 (377)
T ss_pred ---------------------CCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEee
Confidence 11123566667777777777643 23344555555555555544 333222111
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.+.++++.++.. ...+.+.|.++ ||.+.++. .+++|++++...+++++++++++|++++
T Consensus 319 -------~g~~~~i~~~~~-~~~~~~~l~~~-gv~v~~~g------------~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 319 -------KGLMIGIECTEE-VAPVIEQLREE-GLLVLSAG------------PNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred -------cceEEEEEecch-HHHHHHHHHHC-CeEEecCC------------CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 266888888643 66788888888 99987643 5689999988899999999999998763
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=181.58 Aligned_cols=299 Identities=15% Similarity=0.202 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHHcCC--------CCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcC
Q 012718 111 DEYELARKKVAAFINA--------SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG 182 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~--------~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g 182 (458)
.++..+|+++|+++.- ++ +.+++++|+|.|++.++-.| .+|||..+++.|-|++.. ..+.=+.|
T Consensus 121 ~Gl~~frqa~A~Fm~~~r~~~v~fdP-~~~Vv~~G~T~ane~l~fcL----adpgdafLvPtPyY~gfd---rdl~~rTg 192 (471)
T KOG0256|consen 121 HGLPSFRQAVAEFMERARGNRVKFDP-ERVVVTNGATSANETLMFCL----ADPGDAFLVPTPYYPGFD---RDLRWRTG 192 (471)
T ss_pred cCchHHHHHHHHHHHHHhCCCCccCc-cceEEecccchhhHHHHHHh----cCCCceeeecCCCCCccc---ccceeccC
Confidence 4566788888888841 24 48999999999999999888 689999999999999653 33334568
Q ss_pred CeEEEEeCCCC--CCCCHHHHHHhhcC------CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc
Q 012718 183 ANLKFLNLNDD--ESPDLDKLKEMLSR------KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH 251 (458)
Q Consensus 183 ~~~~~v~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~ 251 (458)
+++++|..... ..++++++|+++.+ +++.+++++|+||.|..++ +..+.+++.++++.+|+|++|+...
T Consensus 193 veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sV 272 (471)
T KOG0256|consen 193 VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSV 272 (471)
T ss_pred ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccc
Confidence 99998887743 57899999888754 6799999999999999999 5677777889999999999998544
Q ss_pred ccC-----------CCC-CCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCcc
Q 012718 252 MVV-----------DVQ-GLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF 317 (458)
Q Consensus 252 ~~~-----------~~~-~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (458)
..- +.. ..+..-++.|.||=||.+| +|+++...+-+-....-+. +|
T Consensus 273 F~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kms--------------------sf 332 (471)
T KOG0256|consen 273 FDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMS--------------------SF 332 (471)
T ss_pred cCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHh--------------------hc
Confidence 310 011 2235578889999999888 9999987753322111111 11
Q ss_pred CCCCCCHHHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC------
Q 012718 318 EAGTPAIGEAIGLGAAI--DYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN------ 389 (458)
Q Consensus 318 ~~gt~~~~~~~~l~~al--~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 389 (458)
.. -++..+.. +...| +++.+.-+.+..+|++...+++.+.|+++ |+.++.... |-++|+.+..
T Consensus 333 ~~-vSs~tQ~~-la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~s~A------GlF~wvDlr~lL~s~t 403 (471)
T KOG0256|consen 333 GL-VSSQTQYL-LASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIPCLKSNA------GLFCWVDLRKLLTSLT 403 (471)
T ss_pred cC-CcHHHHHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCceeecCC------eeEEEEEhHHhcCcCC
Confidence 11 12222222 21222 23333336788899999999999999998 888776541 5588888742
Q ss_pred -CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 390 -IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 390 -~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
....++.+++.++-++.++||+.|-- ..+||+|+++.. ..++.++-.+++|..++..
T Consensus 404 fe~El~Lw~~i~~~vklnlSpG~s~~C------~EpGWFRvcFAn-~~~~t~~~am~Ri~~~~~~ 461 (471)
T KOG0256|consen 404 FEGELELWERILDNVKLNLSPGSSCHC------HEPGWFRVCFAN-MSEETLEVAMRRLKQFLDS 461 (471)
T ss_pred hHHHHHHHHHHHHhhccccCCCCccee------cCCCeEEEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 12345666666555999999986632 338999999994 3445555588888888763
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-22 Score=190.93 Aligned_cols=304 Identities=16% Similarity=0.116 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
...++++++++++|.+ ++++|+|||.|+.+++.++ +++||.| ++++.|.+. .......|++++.++++
T Consensus 54 g~~~Leeaia~~~g~~---~vv~t~~Gt~Al~la~~al----~~pGD~V-~~~~~f~~~----~~~i~~~Ga~pv~v~i~ 121 (431)
T cd00617 54 SFYDLEDAVQDLFGFK---HIIPTHQGRGAENILFSIL----LKPGRTV-PSNMHFDTT----RGHIEANGAVPVDLVID 121 (431)
T ss_pred CHHHHHHHHHHHHCCC---eEEEcCCHHHHHHHHHHHh----CCCCCEE-ccCCcccch----HHHHHhCCCEeEEEecc
Confidence 3558899999999986 8999999999999999887 7899987 577777754 33445679999999986
Q ss_pred C----------CCCCCHHHHHHhhcCC----ceEEEEecccCcC-ccccc---HHHHHHHHHhcCcEEEEeccccCC---
Q 012718 192 D----------DESPDLDKLKEMLSRK----TKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSVP--- 250 (458)
Q Consensus 192 ~----------~~~~d~~~l~~~l~~~----~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~vivD~a~~~g--- 250 (458)
+ .|.+|++.|++.++++ +++|+++.++|++ |...+ +++|.++|++||++||.|+++..+
T Consensus 122 ~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~ 201 (431)
T cd00617 122 EAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAY 201 (431)
T ss_pred cccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhh
Confidence 3 2558999999999865 7899999999998 89987 557899999999999999997643
Q ss_pred --------cccCCCCC------CCCcEEEecccCCC-CCCceeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCC
Q 012718 251 --------HMVVDVQG------LDADFLVASSHKMC-GPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPP 314 (458)
Q Consensus 251 --------~~~~~~~~------~~~d~~~~s~~K~~-gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 314 (458)
.....+.+ ...|.++.|++|-+ ++. .|+++.++ +++++++...... .
T Consensus 202 ~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~-GG~i~~~d~~l~~~~~~~~~~~----------------~ 264 (431)
T cd00617 202 FIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI-GGFLALRDDELYEEARQRVVLY----------------E 264 (431)
T ss_pred hhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc-ceEEEeCcHHHHHHHHHhcccc----------------C
Confidence 11111111 13789999999944 444 58899987 4766654221000 0
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----
Q 012718 315 SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN----- 389 (458)
Q Consensus 315 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----- 389 (458)
.....|..+..++.++..+|+...+ .+.+.+++. .+++|.+.|.+. |+.+..|.. +..++++++.
T Consensus 265 ~~~~~gG~~~r~~~A~A~gL~e~~~--~~~l~~~~~-~r~~l~~~L~~~-G~~v~~P~G------gh~v~~d~~~~~~~~ 334 (431)
T cd00617 265 GFVTYGGMAGRDMEALAQGLREAVE--EDYLRHRVE-QVRYLGDRLDEA-GVPIVEPAG------GHAVFIDAREFLPHI 334 (431)
T ss_pred CccccccccHHHHHHHHHHHHhccc--HHHHHHHHH-HHHHHHHHHHHC-CCCccCCCc------ceEEEEEhHHhcCCC
Confidence 1112355566666666556654322 234444444 559999999988 888776652 4467777542
Q ss_pred ----CChHHHHHHHhhhcCeEecc-CCCCChhhHhhcC-----CCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhh
Q 012718 390 ----IHPTDIATLLDQQYGVATRS-GHHCAQPLHRYLG-----VNASARASLH-FYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 390 ----~~~~~~~~~l~~~~gi~~~~-g~~~~~~~~~~~g-----~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.+..+++.+|.++.||.+.. |..... ....-+ ..+.+|+++. ..-|.+++|.+.++|.+++++-.
T Consensus 335 ~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~-~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~ 410 (431)
T cd00617 335 PQEQFPAQALAAELYLEAGVRAVELGIFSAG-RDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERRE 410 (431)
T ss_pred CcccCcHHHHHHHHHHHcCeeEEeecceecc-cCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhHh
Confidence 24677887776665998643 442111 000001 1478999987 33488999999999999987643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=194.52 Aligned_cols=222 Identities=20% Similarity=0.219 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
...++++++.+|+++|++. .+++++|+|.++..++.++ +++||+|+++.++|.+...++ ...|++++.++
T Consensus 58 ~g~i~~~~~~~A~~~ga~~--~~~~~~Gst~a~~~~l~al----~~~gd~Vlv~~~~h~s~~~~~----~~~g~~~~~v~ 127 (294)
T cd00615 58 TGPIKEAQELAARAFGAKH--TFFLVNGTSSSNKAVILAV----CGPGDKILIDRNCHKSVINGL----VLSGAVPVYLK 127 (294)
T ss_pred ChHHHHHHHHHHHHhCCCC--EEEEcCcHHHHHHHHHHHc----CCCCCEEEEeCCchHHHHHHH----HHCCCEEEEec
Confidence 4457789999999999862 5556999999999999887 789999999999999875543 34699999988
Q ss_pred CCCC------CCCCHHHHHHhhcC--CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccC-----CcccCCC
Q 012718 190 LNDD------ESPDLDKLKEMLSR--KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV-----PHMVVDV 256 (458)
Q Consensus 190 ~~~~------~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~-----g~~~~~~ 256 (458)
.+.+ +.+|++++++.+++ ++++++++++ |++|.+.|+++|+++|+++|+++++|++|+. +..+.+.
T Consensus 128 ~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~ 206 (294)
T cd00615 128 PERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSA 206 (294)
T ss_pred CccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcch
Confidence 7533 36899999999864 6789999987 7899999999999999999999999999985 3334445
Q ss_pred CCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH
Q 012718 257 QGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID 335 (458)
Q Consensus 257 ~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 335 (458)
...++|+++.|+||+++ +.++|++.++.+.... ..+.. ....++.+++++..++++..+++
T Consensus 207 ~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~-~~~~~-----------------~~~~~~ttsps~~~~asl~~a~~ 268 (294)
T cd00615 207 AMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNP-DRVNE-----------------ALNLHQSTSPSYLILASLDVARA 268 (294)
T ss_pred hhcCCcEEEEchhcccchHhHHHHHHhCCCcCCH-HHHHH-----------------HHHHHCCCCcHHHHHHHHHHHHH
Confidence 55689999999999654 6667888887653211 11100 01245678999999999999999
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHh
Q 012718 336 YLSTIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
++...|.+ ..++..++.+++++.|.
T Consensus 269 ~~~~~g~~-~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 269 MMALEGKE-LVEELIELALYARQEIN 293 (294)
T ss_pred HHHHHhHH-HHHHHHHHHHHHHHHHh
Confidence 88766644 56778888888888775
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-21 Score=184.70 Aligned_cols=316 Identities=14% Similarity=0.125 Sum_probs=206.3
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.|. .+.+.+++.+.+.....++.. ....+++.+++.+.......++|++|+++|+..++...+ ...
T Consensus 43 lG~-~p~v~~a~~~~~~~~~~~~~~-----------~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar--~~~ 108 (375)
T PRK04260 43 LGF-HPQVQQALQKQAGLIWHSPNL-----------YLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIAR--KAT 108 (375)
T ss_pred CCC-CHHHHHHHHHHHHhcCcccCc-----------cCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHH--Hhc
Confidence 355 677999999988764332211 122566677776644333246899999999998888763 234
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHH------cCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccccc---
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQK------TGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP--- 226 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~------~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~--- 226 (458)
++++|++.+..||+........... .+..+..++.. -..|++.+++.+++++++|+++.+++++|.+.+
T Consensus 109 ~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~ 186 (375)
T PRK04260 109 GKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA--IFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKD 186 (375)
T ss_pred CCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe--CCCCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHH
Confidence 5678999999988765333222110 01111111100 023889999998888899999999999999876
Q ss_pred -HHHHHHHHHhcCcEEEEecccc-CCcc--cC--CCCCCCCcEEEecccCCCCCC-ceeEEEEeccccccCCCccccCcc
Q 012718 227 -IEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQGLDADFLVASSHKMCGPT-GIGFLFGKSDLLSAMPPFLGGGEM 299 (458)
Q Consensus 227 -l~~i~~l~~~~~~~vivD~a~~-~g~~--~~--~~~~~~~d~~~~s~~K~~gp~-g~G~l~~~~~~~~~l~~~~~g~~~ 299 (458)
++++.++|+++|+++|+|++|. +|.. +. ......+|++ |++|.+++. .+|++++++++.+.+.....
T Consensus 187 ~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~---- 260 (375)
T PRK04260 187 FVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKSSLGGAFGYGSH---- 260 (375)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcHHHHhhcCCCCC----
Confidence 8999999999999999999986 2211 11 1223457855 799977642 38999999887665542211
Q ss_pred eEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCc
Q 012718 300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQ 378 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~ 378 (458)
....+.+.....++.++++.+...+ .+++++..+.+++.+.+.+...+.+.... .
T Consensus 261 -----------------~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~ 316 (375)
T PRK04260 261 -----------------GSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVR-------G 316 (375)
T ss_pred -----------------CCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe-------c
Confidence 0112344555666666666654322 34445555555555555555443222111 1
Q ss_pred cccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 379 RAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 379 ~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.+.++++.+. .+..++.+.+.++ ||.+.+.. .+.+|++++...+.+|+++++++|++++
T Consensus 317 ~g~~~~~~~~-~~~~~~~~~l~~~-Gi~v~~~~------------~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 317 LGYMIGIETT-ADLSQLVEAARDK-GLIVLTAG------------TNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred cceEEEEEec-CcHHHHHHHHHhC-CCEEecCC------------CCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 2678888874 3567899999988 99986532 4689999988899999999999998753
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=180.16 Aligned_cols=322 Identities=15% Similarity=0.140 Sum_probs=224.3
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
++|.......+.+++.++|.+.-. .....|+..+...++.+.+++++|.. .++|++|||+|+.+++.+
T Consensus 2 ~~f~SDn~~g~~~~m~eam~~a~~---------~~~~~YG~D~~~~~~e~~~ae~~g~~---a~~Fv~sGT~aN~lal~~ 69 (342)
T COG2008 2 IDFRSDNVAGPTPEMREALAAANA---------VGDDVYGEDPTTNALEQRIAELFGKE---AALFVPSGTQANQLALAA 69 (342)
T ss_pred CccccCccCCCCHHHHHHHHhccc---------cCCCCCCCCHHHHHHHHHHHHHhCCc---eEEEecCccHHHHHHHHH
Confidence 456666667777888888876521 22223455677788999999999983 899999999999999999
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecccCcCc
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNMLA 222 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG 222 (458)
+ ++|+..|++....|...... -...-..+.....+...++|.++++++++.+.+ .+.++++.+.+|..|
T Consensus 70 ~----~~~~~~vi~~~~aHi~~~E~-Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~G 144 (342)
T COG2008 70 H----CQPGESVICHETAHIYTDEC-GAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGG 144 (342)
T ss_pred h----cCCCCeEEEeccccceeccc-CcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCc
Confidence 8 79999999999998865432 111112234444444457899999999998764 346677666667889
Q ss_pred cccc---HHHHHHHHHhcCcEEEEecccc---CCcccCCCC--CCCCcEEEecccCCCCCCceeEEEEeccccccCCCcc
Q 012718 223 SILP---IEEIVHWSHDVGAKVLVDACQS---VPHMVVDVQ--GLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 223 ~~~~---l~~i~~l~~~~~~~vivD~a~~---~g~~~~~~~--~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~ 294 (458)
.++| +++|.++||++|+.+++|++-- .-....+.. +.++|+++++++|.++.++-++++++.+.++++..+.
T Consensus 145 tVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~r 224 (342)
T COG2008 145 TVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWR 224 (342)
T ss_pred eecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHH
Confidence 9999 6688889999999999999933 111112222 3369999999999888777788889988887776332
Q ss_pred --ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 295 --GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 295 --~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
.|++. .-..++++ +.+-.+...-+.....|-.+++++|.+.|.+.+|+++..++
T Consensus 225 K~~Ggl~-----------------------~k~r~laA-~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~ 280 (342)
T COG2008 225 KRAGGLM-----------------------RKARFLAA-QGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPV 280 (342)
T ss_pred HHhcccH-----------------------hhhhHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCC
Confidence 12221 11112222 23334444335667778888899999999988899998874
Q ss_pred CCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCC--CeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN--ASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~--~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
. .+++.+.++. ...+.+... ++....+. +... ..+|+.+++-++++||+++++.++++
T Consensus 281 ~------tN~vf~~l~~----~~i~~l~~~-~~~~~~~~---------~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~ 340 (342)
T COG2008 281 E------TNMVFVRLPE----SAIEALRLA-GALFYRGV---------LIGAHGEIVRFVTSWATSEEDVDELVAAIKAL 340 (342)
T ss_pred c------ccEEEEECCh----HHHHHHHhh-chhheeee---------eccCCCceEEEEeeccCCHHHHHHHHHHHHHh
Confidence 2 7888888774 222444433 43322111 1112 37999999999999999999998876
Q ss_pred H
Q 012718 451 V 451 (458)
Q Consensus 451 ~ 451 (458)
+
T Consensus 341 ~ 341 (342)
T COG2008 341 L 341 (342)
T ss_pred h
Confidence 4
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-22 Score=185.10 Aligned_cols=300 Identities=22% Similarity=0.229 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
....+.+.++++-|.. ..+.++||..|+..++.++ +++||.|++++..|.++..-+..+.++.|+++.+++..
T Consensus 64 T~~~lE~~~a~LEg~~---~~~afsSGmaAI~~~~l~l----l~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~ 136 (396)
T COG0626 64 TRDALEEALAELEGGE---DAFAFSSGMAAISTALLAL----LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPG 136 (396)
T ss_pred cHHHHHHHHHHhhCCC---cEEEecCcHHHHHHHHHHh----cCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCC
Confidence 3445668888888776 6788899999999988887 78999999999999999888888888999999998765
Q ss_pred CCCCCCHHHHHHhhc-CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 192 DDESPDLDKLKEMLS-RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
+.+.+++++. +++++|+++.|+||+-.+.|+.+|+++||++|++++||.+.+.|.. .+.-++|+|+++-|.+|
T Consensus 137 -----~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~-q~PL~~GaDIVvhSaTK 210 (396)
T COG0626 137 -----DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVL-QRPLELGADIVVHSATK 210 (396)
T ss_pred -----ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccc-cChhhcCCCEEEEeccc
Confidence 5566777776 5999999999999999999999999999999999999999998876 33336789999999999
Q ss_pred CCCCCc---eeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 271 MCGPTG---IGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 271 ~~gp~g---~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
.+++++ .|+++.+++. .+.+..... +......+....+-+...++.+ ....
T Consensus 211 yl~GHsDvl~G~v~~~~~~~~~~~~~~~~--------------------~~~G~~l~p~dA~l~lRGlkTL-----~~Rm 265 (396)
T COG0626 211 YLGGHSDVLGGVVLTPNEELYELLFFAQR--------------------ANTGAVLSPFDAWLLLRGLRTL-----ALRM 265 (396)
T ss_pred cccCCcceeeeEEecChHHHHHHHHHHHH--------------------hhcCCCCCHHHHHHHHhccchH-----HHHH
Confidence 888877 6755555543 332211100 0001122222222232233322 3344
Q ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
++..+++..+.+.|++.|.++ ++.|.-..+ ...+++++|.+.+. ...++.+.|.-- .+..+-|..-+
T Consensus 266 ~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~l~-~~a~SlGgveS 344 (396)
T COG0626 266 ERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKLF-KLAESLGGVES 344 (396)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCCcc-EEeccCCCccc
Confidence 556677888888888887776 554431110 23578999999863 233344333321 33333333111
Q ss_pred ------hhhH--------hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 415 ------QPLH--------RYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 415 ------~~~~--------~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
...| ..+|. ++.||+|++. ||++.|++.|+++++.+
T Consensus 345 Li~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl----Ed~eDLi~Dl~~Al~~~ 395 (396)
T COG0626 345 LISHPATMTHASIPLEERAKAGITDGLVRLSVGL----EDVEDLIADLEQALAKA 395 (396)
T ss_pred ccccccccCcccCCHhHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHHhh
Confidence 1111 23444 6899999998 88888999998888764
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=187.49 Aligned_cols=317 Identities=20% Similarity=0.167 Sum_probs=211.3
Q ss_pred ccchhhhhc-CCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 012718 44 SVSLGHITR-PDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAA 122 (458)
Q Consensus 44 ~~~~~~~~r-~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 122 (458)
..++.+.++ ..+|....+.+ + -|+.+-..++.+..+...+.... ++.|. ..+..++...+...++.+.+++
T Consensus 19 ~~~vl~~~~~~l~~~~~~~~~--P--~~~~~~~~~~~~~~i~~~~l~~~--~n~n~--~~~~~~P~~~~~E~~vi~~l~~ 90 (373)
T PF00282_consen 19 LEEVLKDLREILAPGVTHWHH--P--RFFGFVPGGPSPASILADLLASA--LNQNG--FTWEASPAATEIEREVIRWLAD 90 (373)
T ss_dssp HHHHHHHHHHHTHGCS-TTTS--T--TBESSSHT--CHHHHHHHHHHHH--HT-BT--TSTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCCC--h--hHhhhccCCccHHHHHHHHHHhh--hcccc--cccccccccccchHHHHHHHHH
Confidence 344444554 34555544332 2 34555555555665555443332 23332 3334455677888889999999
Q ss_pred HcCCCCC------CcEEEeCChhHHHHHHHHHcCCCCC----------CCCCEEEEcCCCCccchHHHHHHHHHcCCeEE
Q 012718 123 FINASDS------GEIVFTKNATEAINLVAYSWGLSNL----------KSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186 (458)
Q Consensus 123 ~~g~~~~------~~v~~t~g~t~a~~~~~~~l~~~~~----------~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~ 186 (458)
++|.+.. -..++|+|+|+++..++.+.+.+.. .+.-.|++++..|+| +.+.+...|+.++
T Consensus 91 l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S----~~Kaa~~lGlg~~ 166 (373)
T PF00282_consen 91 LFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYS----IEKAARILGLGVR 166 (373)
T ss_dssp HTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-TH----HHHHHHHTTSEEE
T ss_pred HhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccH----HHHhcceeeeEEE
Confidence 9999921 2579999999999988876532110 112368888889984 5788888999999
Q ss_pred EEeCCCCCCCCHHHHHHhhcC---C---ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC-----
Q 012718 187 FLNLNDDESPDLDKLKEMLSR---K---TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD----- 255 (458)
Q Consensus 187 ~v~~~~~~~~d~~~l~~~l~~---~---~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~----- 255 (458)
.||+++++.+|+++|++++.+ + +-+|+.+..++.+|.+.|+++|+++|+++++|+|||++++....-..
T Consensus 167 ~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~ 246 (373)
T PF00282_consen 167 KIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHL 246 (373)
T ss_dssp EE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGG
T ss_pred EecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeeccccccccccccccccc
Confidence 999999999999999998864 2 34788999999999999999999999999999999999987443111
Q ss_pred -CCCCCCcEEEecccCCC-CCCceeEEEEecccc-c-cCCCccccCcceEeeecCCCC--CCC--CCCccC-CCCCCHHH
Q 012718 256 -VQGLDADFLVASSHKMC-GPTGIGFLFGKSDLL-S-AMPPFLGGGEMISDVFLDHST--FAD--PPSRFE-AGTPAIGE 326 (458)
Q Consensus 256 -~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~~~~-~-~l~~~~~g~~~~~~~~~~~~~--~~~--~~~~~~-~gt~~~~~ 326 (458)
..-..+|.++.++||++ .|.++|++++|++.. . .+. ....|..... +.. ....+. .++. -..
T Consensus 247 ~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~--------~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~ 317 (373)
T PF00282_consen 247 LFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFS--------INADYLGNDDRESDESYDYGDYTLQGSR-RFR 317 (373)
T ss_dssp GTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGE--------EEETCTT-S-SSS-GGGCEEEGSSSSSG-HHH
T ss_pred ccccccccccccchhhhhcCCccceeEEeecccchHHHhc--------cChhhhcccccccccccccccccccccc-cch
Confidence 11124899999999955 599999999998642 1 111 0111111000 000 000111 2233 456
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe
Q 012718 327 AIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV 387 (458)
Q Consensus 327 ~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (458)
.+.++..++.+...|+.+..++..++++++.+.|++.+++++..++. .++|+|++
T Consensus 318 alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~------~~~vcFr~ 372 (373)
T PF00282_consen 318 ALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPD------LNIVCFRY 372 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTS------SSEEEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCC------ceEEEEEe
Confidence 67788888988888999999999999999999999999999987543 78999986
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-21 Score=186.41 Aligned_cols=320 Identities=17% Similarity=0.143 Sum_probs=212.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCC-
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSN- 153 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~- 153 (458)
..|...+.+.+++.+.+...... +.. . ......++.+.|+++.+.+ .+.|++||++|+..++...+...
T Consensus 53 ~lGh~~p~v~~a~~~~~~~~~~~---~~~-~---~~~~~~~l~~~l~~~~~~~---~~~~~~sGseA~e~a~klar~~~~ 122 (403)
T PRK05093 53 ALGHCHPALVKALKEQGEKLWHI---SNV-F---TNEPALRLAKKLIDATFAE---RVFFANSGAEANEAAFKLARRYAC 122 (403)
T ss_pred cCCCCCHHHHHHHHHHHHhcCcc---cCc-c---CCHHHHHHHHHHHhhCCCC---EEEEeCchHHHHHHHHHHHHHHHh
Confidence 35677889999999988753211 110 0 1122346778888877543 89999999999999998653110
Q ss_pred ---CCCCCEEEEcCCCCccchHHHHHHHH----HcC-----CeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 154 ---LKSGDEVILTVAEHHSAIVPWQLVAQ----KTG-----ANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 154 ---~~~g~~vl~~~~~~~s~~~~~~~~a~----~~g-----~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
-...++|+..+..||+.......+.. ..| ..+..++.+ |++.+++.+.+++++|+++.+++..
T Consensus 123 ~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~aaiiiep~~~~g 197 (403)
T PRK05093 123 DRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN-----DLAAVKAVIDDHTCAVVVEPIQGEG 197 (403)
T ss_pred hcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC-----CHHHHHHHhcCCeEEEEEecccCCC
Confidence 02356789999999987543322210 001 123333332 8899999998889999999554444
Q ss_pred ccccc----HHHHHHHHHhcCcEEEEecccc-CCcc--cC--CCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccC
Q 012718 222 ASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAM 290 (458)
Q Consensus 222 G~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~--~~--~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l 290 (458)
|...+ +++|.++|++||+++|+|++|+ ++.. .. ......+|+ .|++|.++ .| +|+++.++++++.+
T Consensus 198 g~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi--~s~sK~l~-~G~rig~vv~~~~i~~~l 274 (403)
T PRK05093 198 GVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDI--LTSAKALG-GGFPIGAMLTTAEIASHF 274 (403)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCE--EEeccccc-CCcceEEEEEcHHHHhhc
Confidence 54433 8999999999999999999988 2211 11 122334674 57899777 35 99999999887776
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE--E
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR--I 368 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~--~ 368 (458)
.....+ ... ..+...+.++.++|+.+.. +...++++++.+++.+.|+++ +.+ +
T Consensus 275 ~~~~~~--------------------~t~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 329 (403)
T PRK05093 275 KVGTHG--------------------STY-GGNPLACAVAEAVFDIINT---PEVLEGVKARRQRFVDGLQKI-NQKYGV 329 (403)
T ss_pred CCCCCC--------------------CCC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHH-HhhCCC
Confidence 532221 111 3444456666677777644 345677788888888888765 211 1
Q ss_pred eCCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
.... ...+.++++.++.. ...+++..+.++ ||.+.++. .+++|++++...+++|++++++
T Consensus 330 ~~~~----~~~G~~~~~~l~~~~~~~~~~~~~~l~~~-Gv~v~~~g------------~~~lRl~~~~~~~~~~i~~~~~ 392 (403)
T PRK05093 330 FSEI----RGMGLLIGAELKPQYKGRARDFLNAAAEE-GVMVLVAG------------PDVLRFAPSLVIEEADIDEGLA 392 (403)
T ss_pred eEeE----eeCceEEEEEecCcchhHHHHHHHHHHHC-CeEEecCC------------CCEEEEeCCCCCCHHHHHHHHH
Confidence 1111 11255788877531 356788888888 99987532 4689999998789999999999
Q ss_pred HHHHHHHhh
Q 012718 446 ALNETVSFF 454 (458)
Q Consensus 446 ~l~~~~~~~ 454 (458)
+|.++++++
T Consensus 393 ~l~~~l~~~ 401 (403)
T PRK05093 393 RFEKAVAKV 401 (403)
T ss_pred HHHHHHHHh
Confidence 999998764
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-21 Score=185.75 Aligned_cols=322 Identities=16% Similarity=0.135 Sum_probs=214.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCC-
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSN- 153 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~- 153 (458)
..|...+.+.+++.+.+.+.... +... ..+...++.+.|+++.+.+ .+.|++||++|+..++...+...
T Consensus 48 ~lGh~~p~v~~a~~~~~~~~~~~---~~~~----~~~~~~~la~~L~~~~~~~---~~~f~~SGseA~e~Alk~ar~~~~ 117 (397)
T TIGR03246 48 ALGHAHPELVKALIEQADKLWHI---GNGY----TNEPVLRLAKKLVDATFAD---KVFFCNSGAEANEAALKLARRYAL 117 (397)
T ss_pred cCCCCCHHHHHHHHHHHHhcccc---cCcc----CCHHHHHHHHHHHhhCCCC---EEEEeCCcHHHHHHHHHHHHHHHH
Confidence 35567899999999988763211 1110 1233457788888887653 89999999999999999763210
Q ss_pred ---CCCCCEEEEcCCCCccchHHHHHHHHHc---------CCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 154 ---LKSGDEVILTVAEHHSAIVPWQLVAQKT---------GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 154 ---~~~g~~vl~~~~~~~s~~~~~~~~a~~~---------g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
-..+++|+..+..||+.......+.... ...+..++.+ |++.+++.+.+++++|+++.++++.
T Consensus 118 ~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~aavi~Epi~~~~ 192 (397)
T TIGR03246 118 DKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN-----DLAAAKALISDKTCAVIVEPIQGEG 192 (397)
T ss_pred hcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCC-----CHHHHHHHhccCeEEEEEecccCCC
Confidence 0135678899989998754333321100 0112233322 8899999998889999999888888
Q ss_pred ccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--CC--CCCCCCcEEEecccCCCC-CCceeEEEEeccccccCC
Q 012718 222 ASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VD--VQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 222 G~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~~--~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~ 291 (458)
|...+ +++|.++|++||+++|+|++|. +|... .. .....+|++ +++|.+| +..+|++++++++.+.+.
T Consensus 193 G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lggG~pigav~~~~~i~~~~~ 270 (397)
T TIGR03246 193 GVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDIL--TSAKALGGGFPIGAMLTTTEIAAHLK 270 (397)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEE--EeehhhhCCcceeEEEEcHHHHHhcc
Confidence 87653 8999999999999999999984 22111 11 112347876 5899654 223899999988776664
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC-EEEeC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN-IRIYG 370 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~-~~~~~ 370 (458)
....+ .. .+.++...++..++++.+.+ +.+.++.+++.+++.+.|+++.. +.+..
T Consensus 271 ~~~~~--------------------~t-~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~~ 326 (397)
T TIGR03246 271 VGTHG--------------------TT-YGGNPLACAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKINARYNVFS 326 (397)
T ss_pred CCCcC--------------------CC-CCCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 32110 11 12444556666677776643 45678888888888888876521 11111
Q ss_pred CCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
.. ...+.++.+.+.. .....+++.|.++ |+.+.+.. .+++|++++..++++||++++++|
T Consensus 327 ~v----rg~G~~~~i~~~~~~~~~~~~~~~~l~~~-Gv~~~~~g------------~~~lR~~p~~~~t~~~i~~~~~~l 389 (397)
T TIGR03246 327 EI----RGKGLLIGAVLTEAYQGKAKQFVNAAAEE-GVIALIAG------------PNVVRFAPSLVISDDDIDEGLARF 389 (397)
T ss_pred ee----ecCceEEEEEEcCchhhHHHHHHHHHHHC-CeEEeecC------------CCEEEEeCCCCCCHHHHHHHHHHH
Confidence 11 1125566666542 2356788888888 99886421 468999999889999999999999
Q ss_pred HHHHHhh
Q 012718 448 NETVSFF 454 (458)
Q Consensus 448 ~~~~~~~ 454 (458)
+++++++
T Consensus 390 ~~~l~~~ 396 (397)
T TIGR03246 390 ERAIEQV 396 (397)
T ss_pred HHHHHHh
Confidence 9998753
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-21 Score=186.24 Aligned_cols=315 Identities=14% Similarity=0.171 Sum_probs=214.1
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC-----
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS----- 152 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~----- 152 (458)
...+.+.+++.+.+...... +.. -..+...++.+.++++++.+ .++++++|++|+..++..++..
T Consensus 53 h~~p~v~~a~~~~~~~~~~~---~~~----~~~~~~~~l~~~l~~~~~~~---~~~~~~SGs~A~e~ai~~a~~~~~~~~ 122 (401)
T TIGR01885 53 HCHPKIVKALTEQAQKLTLS---SRA----FYNDVFGEFAEYVTKLFGYD---KVLPMNTGAEAVETAIKLARKWGYKVK 122 (401)
T ss_pred CCCHHHHHHHHHHHHhcccc---ccc----cCCHHHHHHHHHHHhhcCCC---EEEEeCccHHHHHHHHHHHHHHhhhhc
Confidence 35799999999888764211 110 02345567888999998753 8999999999999999875321
Q ss_pred -CCCCCCEEEEcCCCCccchHHHHHHHH------HcC---CeEEEEeCCCCCCCCHHHHHHhhc---CCceEEEEecccC
Q 012718 153 -NLKSGDEVILTVAEHHSAIVPWQLVAQ------KTG---ANLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHISN 219 (458)
Q Consensus 153 -~~~~g~~vl~~~~~~~s~~~~~~~~a~------~~g---~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~n 219 (458)
....+++|+.....||+.......+.. ..+ ..+..++.. |++++++.++ +++.+|+++.+++
T Consensus 123 ~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~avi~E~v~~ 197 (401)
T TIGR01885 123 GIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHGPNVCAFIVEPIQG 197 (401)
T ss_pred CCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcCCCEEEEEEeCccC
Confidence 012356788889998865332222210 011 122333322 7888988885 4668889999999
Q ss_pred cCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc--c--CCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccc
Q 012718 220 MLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--V--VDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLS 288 (458)
Q Consensus 220 ~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~--~--~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~ 288 (458)
++|.+.| +++|.++|++||+++|+|++|. +|.. . .+.....+|+++ ++|.++.++ +|+++.++++++
T Consensus 198 ~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~--~gK~l~~g~~~ig~v~~~~~i~~ 275 (401)
T TIGR01885 198 EAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVL--LGKALSGGVYPVSAVLADDDVML 275 (401)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEE--eeccccCCCCCcEEEEEcHHHHh
Confidence 9999998 9999999999999999999985 2211 1 122345688876 459665433 899999988776
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+.....+ . ..+.+.....++.++|+.+.+. .+.++.+++.+++.+.|+++. ..+
T Consensus 276 ~~~~~~~~--------------------~-t~~~~p~~~~aa~a~L~~i~~~---~l~~~~~~~~~~~~~~L~~l~-~~~ 330 (401)
T TIGR01885 276 TIKPGEHG--------------------S-TYGGNPLACAVAVAALEVLEEE---KLAENAEKLGEIFRDQLKKLP-KPI 330 (401)
T ss_pred hccCCCCC--------------------C-CCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhcc-CCc
Confidence 66532110 0 1123455566667778777653 456788888999999998872 222
Q ss_pred eCCCCCCcCccccEEEEEeCCC----ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVENI----HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
.... ...+.+..+.++.. ...++.+.|.++ ||.+.+.. ++.+|++++...+++||++++
T Consensus 331 ~~~~----~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~-Gv~v~~~~------------~~~lRi~p~l~~t~~~i~~~l 393 (401)
T TIGR01885 331 ITEV----RGRGLLNAIVIDESKTGRTAWDLCLKLKEK-GLLAKPTH------------GNIIRLAPPLVITEEQLDEGL 393 (401)
T ss_pred eeEE----eecCeeEEEEeccCcchhHHHHHHHHHHhC-CEEEEecC------------CCEEEEeCCccCCHHHHHHHH
Confidence 2111 12266666655432 456788999888 99986543 568999999889999999999
Q ss_pred HHHHHHH
Q 012718 445 HALNETV 451 (458)
Q Consensus 445 ~~l~~~~ 451 (458)
++|++++
T Consensus 394 ~~l~~~l 400 (401)
T TIGR01885 394 EIIKKVI 400 (401)
T ss_pred HHHHHHh
Confidence 9999876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-21 Score=185.97 Aligned_cols=324 Identities=13% Similarity=0.103 Sum_probs=214.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCC-
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSN- 153 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~- 153 (458)
..|...+.+.+++.+.+...... +... ..+...++.+.|+++.+.+ .++|++||++|+..++...+...
T Consensus 52 ~lGh~~p~v~~A~~~~~~~~~~~---~~~~----~~~~~~~la~~l~~~~~~~---~v~~~~sGseA~e~Alk~ar~~~~ 121 (406)
T PRK12381 52 ALGHAHPALREALNEQASKFWHT---GNGY----TNEPVLRLAKKLIDATFAD---RVFFCNSGAEANEAALKLARKYAH 121 (406)
T ss_pred cCCCCCHHHHHHHHHHHhhcccc---cCcc----CCHHHHHHHHHHHhhCCCC---eEEEcCCcHHHHHHHHHHHHHHHh
Confidence 35566888999999988753211 1111 1233456778888887543 89999999999999998753210
Q ss_pred ---CCCCCEEEEcCCCCccchHHHHHHHHHcCC---------eEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 154 ---LKSGDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 154 ---~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~---------~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
..++++|+..+.+||+.......+...... .+..++. .|++.+++.+.+++++|+++.. +++
T Consensus 122 ~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~aaviiEPv-~~~ 195 (406)
T PRK12381 122 DRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAY-----NDLNSASALIDDQTCAVIVEPI-QGE 195 (406)
T ss_pred hcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCC-----CCHHHHHHhccCCeeEEEEeCC-cCC
Confidence 124578999999999876433332110000 1122222 2789999999888888888755 555
Q ss_pred cc-cc-c---HHHHHHHHHhcCcEEEEecccc-CCcc--cC--CCCCCCCcEEEecccCCCCC-CceeEEEEeccccccC
Q 012718 222 AS-IL-P---IEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAM 290 (458)
Q Consensus 222 G~-~~-~---l~~i~~l~~~~~~~vivD~a~~-~g~~--~~--~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l 290 (458)
|. +. | +++|.++|++||+++|+|++|. +|.. .. ......+|+ .+++|.+|+ .-+|+++.++++++.+
T Consensus 196 gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi--~t~sK~l~gG~~ig~~~~~~~~~~~~ 273 (406)
T PRK12381 196 GGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDV--LTTAKALGGGFPIGAMLTTEKCASVM 273 (406)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCE--EEehhhhhCCCceEEEEEcHHHHhhc
Confidence 54 33 2 8899999999999999999985 3221 11 122334776 478996652 2289999999887766
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC-CEEEe
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP-NIRIY 369 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~-~~~~~ 369 (458)
.....+ ...+.+....++..++++.+.+ +.+.++++++.+++.+.|+++. .+.+.
T Consensus 274 ~~~~~~---------------------~t~~~~pl~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~ 329 (406)
T PRK12381 274 TVGTHG---------------------TTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINARYGLF 329 (406)
T ss_pred CCCCCC---------------------CCCCCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 532211 0123456666777777777654 3567888888888888887651 11111
Q ss_pred CCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHA 446 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~ 446 (458)
... ...+.++++.++.. ....+.+.+.++ ||.+.+.. ++.+|++++..++++||++++++
T Consensus 330 ~~v----rg~Gl~~~~~l~~~~~~~~~~~~~~l~~~-Gv~v~~~g------------~~~lRl~p~~~~t~~~i~~~~~~ 392 (406)
T PRK12381 330 SEI----RGLGLLIGCVLNAEYAGKAKQISQEAAKA-GVMVLIAG------------PNVVRFAPALNISEEEITTGLDR 392 (406)
T ss_pred EEE----ecCeEEEEEEecCchhhHHHHHHHHHHHC-CcEEeeCC------------CCEEEEeCCccCCHHHHHHHHHH
Confidence 111 12255777777542 346788888888 99986421 46899999988999999999999
Q ss_pred HHHHHHhhhcc
Q 012718 447 LNETVSFFNVF 457 (458)
Q Consensus 447 l~~~~~~~~~~ 457 (458)
|+++++++.++
T Consensus 393 l~~~l~~~~~~ 403 (406)
T PRK12381 393 FARACERFVSR 403 (406)
T ss_pred HHHHHHHHHhc
Confidence 99999887654
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=184.92 Aligned_cols=293 Identities=18% Similarity=0.213 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+..+++.+.++++.|.+ ..+.+++|+.|+++++.++ +++||+|+++...|......+.......|++++.++
T Consensus 63 ~P~~~~lE~~la~leg~~---~av~~sSG~aAi~~al~al----l~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd 135 (384)
T PRK06434 63 NPTVQAFEEKYAVLENAE---HALSFSSGMGAITSAILSL----IKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYID 135 (384)
T ss_pred ChhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH----hCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEEC
Confidence 345567779999999986 6788889999999999987 789999999988888777666677788899999999
Q ss_pred CCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 190 LNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
+++... ++ +++ ++++|++++++||++.+.|+++|+++||+++ +++|++++.+.....+ ..++|++++|.
T Consensus 136 ~~~~~~-----~~--l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl-~~gaDivv~S~ 205 (384)
T PRK06434 136 TDRLNS-----LD--FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNPL-DLGADVVIHSA 205 (384)
T ss_pred CCChhh-----ee--ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCch-hcCCCEEEeec
Confidence 864222 22 334 6899999999999999999999999999998 5679998766542222 46799999999
Q ss_pred cCCCCC-Cc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 269 HKMCGP-TG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 269 ~K~~gp-~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
+|+++. .+ .|+++.++ ++.+++.......+ ...+... .+..+..++. ++.
T Consensus 206 tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G---------------------~~~~~~~---A~l~~~gL~t--L~~ 259 (384)
T PRK06434 206 TKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLG---------------------SNPDPIQ---AYLALRGLKT--LGL 259 (384)
T ss_pred ccccCCCCCceEEEEecCcHHHHHHHHHHHHhcC---------------------CCCCHHH---HHHHHhCCCc--HHH
Confidence 997654 43 67776654 33333332111000 1112211 1122222322 566
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEE-EeCCCCC----CcCccccEEEEEeCCCChHHHHHHHhhhcCe---EeccCCC----
Q 012718 345 IHAYEMELAKYLYENLLSIPNIR-IYGPKPS----EHVQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSGHH---- 412 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g~~---- 412 (458)
..++..+++..+.+.|+.+|.++ +..|.-. .....+++++|.+.+ .++..+.+..- .+ .++-|..
T Consensus 260 R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~--~~~~~~f~~~l-~l~~~~~slG~~~sl~ 336 (384)
T PRK06434 260 RMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS--MEDVHKFIRNL-EIPMVAASLGGVESLI 336 (384)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECC--HHHHHHHHHhC-CcceEccCCCCCCeee
Confidence 77888899999999999988764 4433210 002347799999974 33333333322 33 2233331
Q ss_pred --CChh--------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 413 --CAQP--------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 413 --~~~~--------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
+... .....|. ++.||+|++. ||++.+++.|+++++
T Consensus 337 ~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGl----Ed~~dLi~dl~~Al~ 383 (384)
T PRK06434 337 TLPVETSHSSLSPEERERLGISDNLVRFSIGI----EDIDDLIKDIENALS 383 (384)
T ss_pred ECCCccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHhc
Confidence 1111 1123444 5789999998 788888888888875
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=192.15 Aligned_cols=345 Identities=15% Similarity=0.120 Sum_probs=250.8
Q ss_pred EEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 69 VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 69 i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
.|++.|... ..|+.+.+.+.+.-.. ....+......+.+.-+.+-+.+..++++.|.+.. +.-+..++|.+-+.++.
T Consensus 67 ~fig~G~y~~~~p~~i~r~v~~~p~~-~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~a-NaSl~d~atA~aEa~~~ 144 (939)
T TIGR00461 67 SYIGMGYYGTILPPVIQRNLLENPGW-YTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVA-NASLLDEGTAAAEAMAL 144 (939)
T ss_pred ccCCCCcCCCcCChHHHHHHHhCchh-hhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChh-hhhccchhhHHHHHHHH
Confidence 455666555 4566655455443221 11111122224455667777899999999999965 77888899998888877
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
+.+. ..+++++|++++..|+.....++..++..|++++.++ +++|++.+ ++..+++..| |..|.+.++
T Consensus 145 a~~~-~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~--------~~~l~~~~--~~~~v~~q~P-n~~G~ied~ 212 (939)
T TIGR00461 145 SFNV-SKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD--------CSDIKKAV--DVFGCLLQYP-ATDGSILDY 212 (939)
T ss_pred HHHh-hcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc--------HHHHhhcC--CEEEEEEECC-CCCeEEecH
Confidence 7521 1223589999999999999889988999999999884 34566655 5666666666 779999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC-----CCCCceeEEEEeccccccCCCccccCcceEe
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-----CGPTGIGFLFGKSDLLSAMPPFLGGGEMISD 302 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-----~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~ 302 (458)
++|++++|++|.+++++.-.....+.....++|+|+++++.+++ ||+++.|++.+++++.+.++..+.|+..-..
T Consensus 213 ~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~ 292 (939)
T TIGR00461 213 KQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDAL 292 (939)
T ss_pred HHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCC
Confidence 99999999999999997776666665677889999999988885 3444499999999999999866665542111
Q ss_pred ----eecCCCCCCCCCCccCCCCCCHHHHHHHHH---H--HHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 303 ----VFLDHSTFADPPSRFEAGTPAIGEAIGLGA---A--IDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 303 ----~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~---a--l~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
..+.... .....|.+.+|+|+....++.+ + +.++...|+.++.+++..++.++.+.|.+. |+++..++
T Consensus 293 G~~~~~l~Lqt-ReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~~~~~- 369 (939)
T TIGR00461 293 GNTALRLALQT-REQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND-PHELINKT- 369 (939)
T ss_pred CCccceeeccc-ccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC-
Confidence 0010111 2224677788888766555544 3 455666789999999999999999999985 99887652
Q ss_pred CCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
. ...+.++++..+..++.+.+.++ ||.++... .+.+++|+..++|.+||+.+++.+.
T Consensus 370 f-----F~~~~v~~~~~~~~~i~~~~~~~-gi~l~~~~------------~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 370 W-----FDTLTVKVGNGISSELLKAAEEF-NINLRAVD------------TTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred c-----cceEEEEeCCCCHHHHHHHHHHC-CCeeeecC------------CCEEEEEeecCCCHHHHHHHHHHhc
Confidence 1 33566666545678899999998 99976421 4689999999999999999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-21 Score=173.26 Aligned_cols=306 Identities=18% Similarity=0.169 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHHcC----CCCC--CcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCC
Q 012718 110 TDEYELARKKVAAFIN----ASDS--GEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA 183 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g----~~~~--~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~ 183 (458)
..+..++...+.++.+ .+.. -+|++|+|.|.++..+++.+ +++||.|++...+|.+.+..+ +..|+
T Consensus 99 s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~----~N~gd~vlie~~ty~~AL~s~----~a~gv 170 (472)
T KOG0634|consen 99 SSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTL----INRGDHVLIEEYTYPSALQSM----EALGV 170 (472)
T ss_pred ccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHh----hcCCCceEEecccchHHHHhc----cccCc
Confidence 3344456666666554 2221 28999999999999999998 899999999999999765443 45699
Q ss_pred eEEEEeCCCCCCCCHHHHHHhhcC---------Cce-EEEEecccCcCcccccH---HHHHHHHHhcCcEEEEeccccCC
Q 012718 184 NLKFLNLNDDESPDLDKLKEMLSR---------KTK-LVVIHHISNMLASILPI---EEIVHWSHDVGAKVLVDACQSVP 250 (458)
Q Consensus 184 ~~~~v~~~~~~~~d~~~l~~~l~~---------~~~-~v~~~~~~n~tG~~~~l---~~i~~l~~~~~~~vivD~a~~~g 250 (458)
+++.|+++.+|. +++.|++.+.. +++ +..++..+||||..+++ ++|.++||+|+++||+|+.|.+-
T Consensus 171 ~~ipv~md~~Gi-~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~L 249 (472)
T KOG0634|consen 171 KIIPVKMDQDGI-DPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFL 249 (472)
T ss_pred eEEeccccCCCC-CHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCcccee
Confidence 999999887775 89999988753 243 55699999999999995 48999999999999999998732
Q ss_pred cc--------------------------cCCCCCCCCcEEEecccCCCCCCc-eeEEEEeccccccCCCccccCcceEee
Q 012718 251 HM--------------------------VVDVQGLDADFLVASSHKMCGPTG-IGFLFGKSDLLSAMPPFLGGGEMISDV 303 (458)
Q Consensus 251 ~~--------------------------~~~~~~~~~d~~~~s~~K~~gp~g-~G~l~~~~~~~~~l~~~~~g~~~~~~~ 303 (458)
.+ .++++..|..+-..||||+++|+- +||+.+++..++++-....
T Consensus 250 q~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae-------- 321 (472)
T KOG0634|consen 250 QMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAE-------- 321 (472)
T ss_pred eccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcc--------
Confidence 22 122334456677779999998766 9999999876655432211
Q ss_pred ecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHhcC-C-C-EEEeCCCCCCc
Q 012718 304 FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG----MQKIHAYEMELAKYLYENLLSI-P-N-IRIYGPKPSEH 376 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g----~~~~~~~~~~l~~~l~~~L~~~-~-~-~~~~~~~~~~~ 376 (458)
+....|+-.....+.+.++.+.+.| +.+++..+...+..+..+|.+. | + +++..|..
T Consensus 322 -------------~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~a--- 385 (472)
T KOG0634|consen 322 -------------VATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKA--- 385 (472)
T ss_pred -------------eeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCc---
Confidence 1111233333444555555555533 4455666666677777777553 3 3 55555541
Q ss_pred CccccEEEEEeC--------CCC-hHH-HHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHH
Q 012718 377 VQRAALCSFNVE--------NIH-PTD-IATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHA 446 (458)
Q Consensus 377 ~~~~~~v~~~~~--------~~~-~~~-~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~ 446 (458)
|.++|++++ ..+ ..+ +...+.++ ||.+.+|+.+..--.... .+-++|++++. -..+++++.+++
T Consensus 386 ---GmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~-gV~~v~G~~F~v~p~~s~-~kiffRls~a~-a~~e~l~~g~~r 459 (472)
T KOG0634|consen 386 ---GMFIWVEIPYINFDTKKSINQIEEIIFIKAVKN-GVKLVCGSWFMVDPESSW-SKIFFRLSIAF-AEPEKLDEGIER 459 (472)
T ss_pred ---ceEEEEEecccccccccchHHHHHHHHHHHHHC-CeEEecCceeEEcCccCC-CcceEEEEeec-CCHHHHHHHHHH
Confidence 558999996 222 223 34445566 999998885433210011 13489999997 567899999999
Q ss_pred HHHHHHhh
Q 012718 447 LNETVSFF 454 (458)
Q Consensus 447 l~~~~~~~ 454 (458)
+..++++.
T Consensus 460 f~~~ike~ 467 (472)
T KOG0634|consen 460 FGSVIKEH 467 (472)
T ss_pred HHHHHHHH
Confidence 99998864
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-20 Score=181.11 Aligned_cols=316 Identities=14% Similarity=0.200 Sum_probs=208.9
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCC---
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSN--- 153 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~--- 153 (458)
|...+.+.+++.+.+.+..... ... ..+...++.+.|+++++.+ .++|+++|++|++.++...+...
T Consensus 90 Gh~~p~v~~ai~~ql~~~~~~~---~~~----~~~~~~~la~~L~~~~~~~---~~~f~~SGseA~e~AlklAr~~~~~~ 159 (474)
T PLN02624 90 GHCHPKIIKALTEQAEKLTLSS---RAF----YNDKFPEFAEYLTSMFGYD---MVLPMNTGAEGVETAIKLARKWGYEK 159 (474)
T ss_pred CCCCHHHHHHHHHHHHhcCCcc---ccc----CCHHHHHHHHHHHhhcCCC---eEEEeCChHHHHHHHHHHHHHHHHhh
Confidence 4458999999999988643211 111 1234456778888888643 89999999999999997543110
Q ss_pred --CCCC-CEEEEcCCCCccchHHHHHHHHHc----C-----CeEEEEeCCCCCCCCHHHHHHhhc---CCceEEEEeccc
Q 012718 154 --LKSG-DEVILTVAEHHSAIVPWQLVAQKT----G-----ANLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHIS 218 (458)
Q Consensus 154 --~~~g-~~vl~~~~~~~s~~~~~~~~a~~~----g-----~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~ 218 (458)
..++ .+|+....+||+.......+.... + ..+..++.. |++.+++.++ +++++|+++.++
T Consensus 160 ~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~iaaiiiEpv~ 234 (474)
T PLN02624 160 KGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFG-----DLDALEKIFEEDGDRIAAFLFEPIQ 234 (474)
T ss_pred cCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCC-----CHHHHHHHHHhCCCCEEEEEECCcc
Confidence 0112 368888888997754433321100 0 012233322 7888988885 357899999999
Q ss_pred CcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCCC--ceeEEEEecccc
Q 012718 219 NMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPT--GIGFLFGKSDLL 287 (458)
Q Consensus 219 n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp~--g~G~l~~~~~~~ 287 (458)
+++|.++| +++|.++|++||+++|+|++|. +|.. ..+.....+|+++ ++|.+|.+ .+|+++.+++++
T Consensus 235 ~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~--lsK~lggG~~pigav~~~~~i~ 312 (474)
T PLN02624 235 GEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVI--LGKALGGGVIPVSAVLADKDVM 312 (474)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEE--ecccccCCCCcceeeeecHHHH
Confidence 99999998 9999999999999999999997 3321 1222344588777 46966544 389999988766
Q ss_pred ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----
Q 012718 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI---- 363 (458)
Q Consensus 288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~---- 363 (458)
+.+.+...+ ...+.+....++..++++.+.+. .+.++..++.+++.+.|.++
T Consensus 313 ~~~~~~~~~---------------------~T~~g~pl~~aaa~aaLe~l~~~---~l~~~~~~~~~~l~~~L~~l~~~~ 368 (474)
T PLN02624 313 LCIKPGEHG---------------------STFGGNPLASAVAMAALQVVQDE---KLAERSAKLGQELRDQLQKIQKQF 368 (474)
T ss_pred hHhccCCcC---------------------CCCCCCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555432110 11135556677777778877653 34455556666666655443
Q ss_pred CC-EEEeCCCCCCcCccccEEEEEeCC-----CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCH
Q 012718 364 PN-IRIYGPKPSEHVQRAALCSFNVEN-----IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437 (458)
Q Consensus 364 ~~-~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~ 437 (458)
+. +.... ..+.++.+.+.. ....++++.|.++ ||.+.++. .+.+||++++.+++
T Consensus 369 ~~~i~~vr-------g~G~~~~i~l~~~~~~~~~a~~~~~~L~e~-GV~v~p~~------------~~~lR~~p~l~~t~ 428 (474)
T PLN02624 369 PKLIKEVR-------GRGLLNAVVLNSPKLGPVSAYDVCLKLKER-GLLAKPTH------------DTIIRLAPPLSISE 428 (474)
T ss_pred CCceEEEE-------eeEEEEEEEecCCCcChHHHHHHHHHHHhC-CeEEecCC------------CCEEEEECCccCCH
Confidence 21 22111 125566665542 1245788888888 99997653 57899999988999
Q ss_pred HHHHHHHHHHHHHHHh
Q 012718 438 EDVDEFIHALNETVSF 453 (458)
Q Consensus 438 ~di~~l~~~l~~~~~~ 453 (458)
+||++++++|++++++
T Consensus 429 e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 429 DELQECSKALSDVLEH 444 (474)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=180.38 Aligned_cols=306 Identities=17% Similarity=0.204 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChh-HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNAT-EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t-~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
....+++.+.+++++|.+..+..++++++| .++.+++.+++.. -.+|+.|+++...|.++ .+.+...|++++.+
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~-~~~gd~VI~p~~th~S~----~kAi~~~G~~pv~V 178 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK-RPKAKYVIWPRIDQKSC----IKAISTAGFEPRVI 178 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc-CCCCCEEEEECcChHHH----HHHHHHcCCeEEEe
Confidence 456667889999999998544688889999 6888888877421 11589999999998866 44556679999999
Q ss_pred eC--C-CCCCCCHHHHHHhhcC---CceEEEEecc-cCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccC-CC----
Q 012718 189 NL--N-DDESPDLDKLKEMLSR---KTKLVVIHHI-SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-DV---- 256 (458)
Q Consensus 189 ~~--~-~~~~~d~~~l~~~l~~---~~~~v~~~~~-~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~-~~---- 256 (458)
+. + +++.+|+++++++|++ +..++++..+ ++.+|...|+++|+++|++||+++|+|++|+.+.... .+
T Consensus 179 d~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g 258 (444)
T TIGR03531 179 ETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKA 258 (444)
T ss_pred eeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhcc
Confidence 95 3 4578899999999986 3445555444 3445688899999999999999999999999755321 11
Q ss_pred CCC-CCcEEEecccCCCC-CCceeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHH
Q 012718 257 QGL-DADFLVASSHKMCG-PTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA 333 (458)
Q Consensus 257 ~~~-~~d~~~~s~~K~~g-p~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 333 (458)
.+. .+|++++|+||++. |.++|+++.++ ++++.+.....+ + ..+. ....+..+
T Consensus 259 ~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g-------------------~----~~~s-~~~~~~~~ 314 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPG-------------------R----ASAS-PSLDVLIT 314 (444)
T ss_pred ccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccC-------------------C----CCCh-HHHHHHHH
Confidence 123 26999999999665 66678777744 555444322110 0 0111 12333344
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccE-EEEEeC---CCChHHHHHHHhhhcCeE
Q 012718 334 IDYLSTIGMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAAL-CSFNVE---NIHPTDIATLLDQQYGVA 406 (458)
Q Consensus 334 l~~~~~~g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~-v~~~~~---~~~~~~~~~~l~~~~gi~ 406 (458)
+..+...+++++.++..++++++.+.|.++ .|-+++..+. .++ +++.+. +.+...+-..|..+ +|.
T Consensus 315 ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~------n~is~~~~~~~~~~~~~~~~g~~l~~~-~v~ 387 (444)
T TIGR03531 315 LLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPE------NPISSAMTLSTLKGKDPTMLGSMLYSR-RVT 387 (444)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCC------CceeEEEecccccccCHHHHHHHHHhC-CCC
Confidence 444545578888899999999999998765 2556654432 222 334444 34567777788766 662
Q ss_pred ----eccCCC--CChhhHhhcCC------CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 407 ----TRSGHH--CAQPLHRYLGV------NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 407 ----~~~g~~--~~~~~~~~~g~------~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+.++.. ...-.+..+|. ..++-++.....+.+|||.+++.|++++
T Consensus 388 g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 388 GPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred CceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 233330 00000011111 2366666666689999999999998763
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=183.73 Aligned_cols=342 Identities=11% Similarity=0.103 Sum_probs=220.8
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+..... .... ..+...++.+.|++.+.... +.+.|++||+
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~~~-----~~~~~~~la~~l~~~~p~~~-~~v~f~~sGs 112 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVI-FAGF-----THEPAERLAQRLVALTPGGL-DHVFFSDSGS 112 (423)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCcc-cccc-----CCHHHHHHHHHHHHhCCCCC-CEEEEeCCcH
Confidence 344566643 345677899999999887632111 0000 12333456677777774222 3899999999
Q ss_pred HHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHHcC---------CeEEEEeCCCC--CCCCHHHHHHh
Q 012718 140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQKTG---------ANLKFLNLNDD--ESPDLDKLKEM 204 (458)
Q Consensus 140 ~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g---------~~~~~v~~~~~--~~~d~~~l~~~ 204 (458)
+|++.+++..+.. ....+.+|+....+||+....+..+..... ..+..++...+ ...+++.+++.
T Consensus 113 eA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~ 192 (423)
T PRK05964 113 VAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEAL 192 (423)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHH
Confidence 9999999865321 012456899999999988766554322110 01223333211 11127778887
Q ss_pred hc---CCceEEEEec-ccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCC
Q 012718 205 LS---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKM 271 (458)
Q Consensus 205 l~---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~ 271 (458)
+. +++.+|+++. +++..|...+ +++|.++|++||+++|+|++|. +|.. ..+.....+|+++ ++|.
T Consensus 193 l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~--~~K~ 270 (423)
T PRK05964 193 LEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMC--LSKG 270 (423)
T ss_pred HHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeee--eehh
Confidence 74 3567888887 6888898886 8999999999999999999985 3321 1122234588765 5796
Q ss_pred CC-C-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCC--CCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 272 CG-P-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG--TPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 272 ~g-p-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
++ + ..+|+++.++++.+.+.... .+. ..+..+ +.+....+++.++++.+.+. .+.+
T Consensus 271 l~gG~~p~~av~~~~~i~~~~~~~~-~~~----------------~~~~~~T~~~np~~~aaa~a~l~~l~~~---~~~~ 330 (423)
T PRK05964 271 LTGGYLPLAATLCTAEIFEAFYSDD-RAK----------------AFMHSPSYTANPLACAAANASLDLFEDE---PVLE 330 (423)
T ss_pred hhcCcccceEEEEcHHHHHhhhcCC-ccc----------------ccccCCCCCcCHHHHHHHHHHHHHHHhc---CHHH
Confidence 54 3 34888999988876654210 000 001122 35666777777888877653 4567
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC----hHHHHHHHhhhcCeEeccCCCCChhhHhhcCC
Q 012718 348 YEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH----PTDIATLLDQQYGVATRSGHHCAQPLHRYLGV 423 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~ 423 (458)
+..++.+++.+.|+++......... ...+.++.+.+.+.+ ...+.+.|.++ ||.+.+.
T Consensus 331 ~~~~~g~~l~~~l~~l~~~~~i~~v----rg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~-Gv~v~~~------------- 392 (423)
T PRK05964 331 RVAALSAGLAEGLEPFRDLPGVADV----RVLGAIGAVELDRPVLERDGPALRAFALER-GVLLRPL------------- 392 (423)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEe----ecccEEEEEEeccCcchhHHHHHHHHHHHC-CeEEEec-------------
Confidence 7778888888877665222111111 123667778776433 55788888888 9998642
Q ss_pred CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 424 NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 424 ~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.+|+++++++|++|||+++++++++++++
T Consensus 393 ~~~lR~~p~l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 393 GNTIYLMPPYIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred CCEEEEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence 2479999999999999999999999998763
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-20 Score=168.23 Aligned_cols=338 Identities=16% Similarity=0.173 Sum_probs=238.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCC-cchhhhHHHHHHHH-HHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRG-IHFLSAKATDEYEL-ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
+-.-.++.+.+++-..+.+.+..-..+ .++.|-+..+.+|. +.++..++||++.. -+-..||++|+..+..++
T Consensus 34 SEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~a--nVQPhSGs~AN~av~~Al--- 108 (413)
T COG0112 34 SENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYA--NVQPHSGSQANQAVYLAL--- 108 (413)
T ss_pred ccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCcc--ccCCCCchHHHHHHHHHH---
Confidence 334578889998888877643322222 23333344455444 78899999999843 244567888999999998
Q ss_pred CCCCCCEEEEcCCCCccchHHH--HHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHH
Q 012718 153 NLKSGDEVILTVAEHHSAIVPW--QLVAQKTGANLKFLNLND-DESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~--~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~ 228 (458)
++|||+|+-.+..|.+++.-. ..+.... .+++.++++. ++.+|.+++++...+ ++++|+.-. +-.-...|++
T Consensus 109 -l~pGDtimgm~l~~GGHltHg~~v~~sG~~-~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~--SaY~r~id~~ 184 (413)
T COG0112 109 -LQPGDTIMGLDLSHGGHLTHGSPVNFSGKL-FNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGG--SAYSRPIDFK 184 (413)
T ss_pred -cCCCCeEecccCCCCCcccCCCCCCcccee-EEeEecccccccCccCHHHHHHHHHHhCCCEEEECc--cccccccCHH
Confidence 899999998887776543211 0111111 4677888884 489999999998765 889888743 3344667899
Q ss_pred HHHHHHHhcCcEEEEeccccCCc-----ccCCCCCCCCcEEEecccC-CCCCCceeEEEEec-cccccCCCccccCcceE
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPH-----MVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKS-DLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~ 301 (458)
++.++|++.|+++++|.+|-.|. .|-.+.. +|++++|.|| +.||.| |+++.++ ++.+++......+.
T Consensus 185 ~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~--AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~aVFPg~--- 258 (413)
T COG0112 185 RFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH--ADVVTTTTHKTLRGPRG-GIILTNDEELAKKINSAVFPGL--- 258 (413)
T ss_pred HHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc--cceEeCCcccCCCCCCc-eEEEeccHHHHHHhhhhcCCcc---
Confidence 99999999999999999998543 3333333 9999999999 678885 7777775 77777764333222
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA 381 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 381 (458)
.|.|...-+++...++....+-+++.+.+++.++++.|.+.|.+. |++++.-.- + .-
T Consensus 259 -----------------qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgT---d--nH 315 (413)
T COG0112 259 -----------------QGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGT---D--NH 315 (413)
T ss_pred -----------------CCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCc---c--ce
Confidence 367777888888899998888889999999999999999999986 999887432 1 23
Q ss_pred EEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC----CCHHHHHHHHHHHHHHHHh
Q 012718 382 LCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY----NTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 382 ~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~----~t~~di~~l~~~l~~~~~~ 453 (458)
.+.+.+. +.+..+....|.+. ||.+.-...+.-+.. --.+..|||..... ..++|++++.+.|.+++..
T Consensus 316 l~lVDl~~~~~~Gk~ae~~L~~~-~It~NKN~iP~D~~~--p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 316 LVLVDLRSKGLTGKKAEAALERA-GITVNKNAIPFDPES--PFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred EEEEEcccCCCCHHHHHHHHHHc-CEeeccCCCCCCCCC--CCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 4445554 55677788888877 998864332211110 01267899976543 3678999999998888764
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=174.16 Aligned_cols=317 Identities=14% Similarity=0.134 Sum_probs=208.6
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC-
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL- 154 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~- 154 (458)
.|.-.+.+.+++.+.+.+..... ... ..+...++-+.|++..+. +.+.|+++|++|++.+++..+...-
T Consensus 29 lGh~~p~v~~ai~~q~~~~~~~~---~~~----~~~~~~~la~~l~~~~~~---~~v~f~~sGseA~e~AlklAr~~~~~ 98 (382)
T PLN00144 29 LGHGDPDWVKAVAEQAGTLAHVS---NVY----HTIPQVELAKRLVASSFA---DRVFFCNSGTEANEAAIKFARKYQRV 98 (382)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcc---ccc----cCHHHHHHHHHHHhcCCC---CeEEEeCCcHHHHHHHHHHHHHHHhc
Confidence 55678899999999987642211 100 022233455666666543 3899999999999999986532100
Q ss_pred ----CC------CCEEEEcCCCCccchHHHHHHHHHcCC---------eEEEEeCCCCCCCCHHHHHHhhcC-CceEEEE
Q 012718 155 ----KS------GDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDESPDLDKLKEMLSR-KTKLVVI 214 (458)
Q Consensus 155 ----~~------g~~vl~~~~~~~s~~~~~~~~a~~~g~---------~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~ 214 (458)
++ +.+|+....+||+.......+...... .+..+|.. |++.+++.+.. ++++|++
T Consensus 99 ~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~~~aavi~ 173 (382)
T PLN00144 99 RAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYG-----NLEAARKLIQKGKTAAVFV 173 (382)
T ss_pred cCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCC-----CHHHHHHhcCCCCeEEEEE
Confidence 01 357999999999876544432111000 12223222 78899988854 6788888
Q ss_pred ecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC-CceeEEEEec
Q 012718 215 HHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-TGIGFLFGKS 284 (458)
Q Consensus 215 ~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~ 284 (458)
+..+|+.|...+ +++|.++|++||+++|+|+++. +|.. +.+.....+| +.+++|.+++ ..+|++++++
T Consensus 174 eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD--i~t~sK~l~~G~pig~v~~~~ 251 (382)
T PLN00144 174 EPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD--IMTLAKPLAGGLPIGAVLVTE 251 (382)
T ss_pred ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC--EEEecccccCCcceEEEEEcH
Confidence 888999555543 7899999999999999999987 3222 1123445688 5568996553 3399999999
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH----
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL---- 360 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L---- 360 (458)
++.+.+.+...+ ...+.+....+++.++|+++.+. .+.++++++.+++.+.|
T Consensus 252 ~~~~~~~~~~~~---------------------~T~~~~pl~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~l~~~~ 307 (382)
T PLN00144 252 KVASAINPGDHG---------------------STFAGGPLVCNAALAVLDKISKP---GFLASVAKKGEYLRELLRRKL 307 (382)
T ss_pred HHHhccCCCCCC---------------------CCCCCCHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHHHHH
Confidence 887776532211 11245566667777788888653 34445555555554444
Q ss_pred hcCCCE-EEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 361 LSIPNI-RIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 361 ~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
.+.|.+ .+. ..|.++++.+. .....+.+.+.++ ||.+.++. ..+.+|++++...+++|
T Consensus 308 ~~~~~~~~vr--------g~G~~~~l~l~-~~~~~~~~~~~~~-Gv~i~~~~-----------~~~~lrl~p~~~~~~~~ 366 (382)
T PLN00144 308 GGNPHVKEVR--------GVGLLVGIQLD-VPAGPLVDACRDS-GLLVLTAG-----------KGDVVRLVPPLVISEAE 366 (382)
T ss_pred hhCCCceeee--------cCceEEEEEec-CccHHHHHHHHHC-CeEEeecC-----------CCCEEEEeCCCccCHHH
Confidence 333322 111 23678888883 3457888888888 99987652 14689999998788999
Q ss_pred HHHHHHHHHHHHHhh
Q 012718 440 VDEFIHALNETVSFF 454 (458)
Q Consensus 440 i~~l~~~l~~~~~~~ 454 (458)
++++++.|++++.++
T Consensus 367 i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 367 LEQAVEILADCLPAL 381 (382)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998754
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=170.24 Aligned_cols=338 Identities=15% Similarity=0.188 Sum_probs=228.3
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++-.|+|..+ .|-..+.+.+++.+.+...........+ .+...++-+.|.+.+..+....++|+++|+
T Consensus 54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~------~e~~v~~ae~L~~~~p~~~~~~~~f~~sGa 127 (447)
T COG0160 54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLY------YEPYVELAEKLTALAPGSGLKKVFFGNSGA 127 (447)
T ss_pred CCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCccc------chhHHHHHHHHHHhCCcccCCeEEecCCcH
Confidence 4556666443 4567899999999998886532222211 244445667777777664333789999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-----cC-----CeEEEEeCCCCCC------------CC
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG-----ANLKFLNLNDDES------------PD 197 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~g-----~~~~~v~~~~~~~------------~d 197 (458)
+|++.+++..+ ....+..|+.....||+.+.....+... .| ..+..+|....+. ..
T Consensus 128 eA~E~AiKiAr--~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~ 205 (447)
T COG0160 128 EAVEAAIKIAR--AYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA 205 (447)
T ss_pred HHHHHHHHHHH--HHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHH
Confidence 99999998764 3456678999999999876655443221 11 1356666553211 12
Q ss_pred HHHHHHhhcC------CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc----CCcccCCCCCC--CC
Q 012718 198 LDKLKEMLSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS----VPHMVVDVQGL--DA 261 (458)
Q Consensus 198 ~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~----~g~~~~~~~~~--~~ 261 (458)
.+.++..+.. ++++++++.++...|.+.| ++++.++|++||+++|+|++|. .|.+ +.++.+ .+
T Consensus 206 ~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~-fa~E~~gv~P 284 (447)
T COG0160 206 LEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKM-FAFEHFGVEP 284 (447)
T ss_pred HHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccc-hhhhhcCCCC
Confidence 2334443322 5799999999999999998 8899999999999999999998 2333 344433 48
Q ss_pred cEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh
Q 012718 262 DFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI 340 (458)
Q Consensus 262 d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 340 (458)
|+++ ++|.+| ...+|.++.++++.+ ..+-..+++ ...|+...++..+.|+.+.+
T Consensus 285 Divt--~aK~ig~G~Pl~avv~r~ei~~-~~~g~~~~T---------------------f~GNpva~Aaa~AvL~vie~- 339 (447)
T COG0160 285 DIVT--LAKSLGGGLPLSAVVGRAEIMD-WPPGGHGGT---------------------FGGNPVACAAALAVLDVIEE- 339 (447)
T ss_pred CEEE--ecccccCCCceeEEeccHHhcc-cCCcccCCC---------------------CCcCHHHHHHHHHHHHHHHH-
Confidence 9998 779554 444999999998866 332222111 23455566666667776655
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcC-CCEEEeCCCCCCcCccccEEEEEeCC------CC---hHHHHHHHhhhcCeEeccC
Q 012718 341 GMQKIHAYEMELAKYLYENLLSI-PNIRIYGPKPSEHVQRAALCSFNVEN------IH---PTDIATLLDQQYGVATRSG 410 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~------~~---~~~~~~~l~~~~gi~~~~g 410 (458)
+.+.++..++.++|.+.|.++ ..+.+.+.. ..+|-++.+.+.. .+ ...+++.+.++ |+.+...
T Consensus 340 --e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdV----RG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~-Glil~~~ 412 (447)
T COG0160 340 --ENLLERAAELGEYLRDRLEELQEKHPLIGDV----RGLGLMIGVELVKDRDTKEPDAELAAKIVARAFER-GLLLLTC 412 (447)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHhhcCceecc----cccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHc-CCEEecc
Confidence 467788888888888888765 122234443 2345677776642 11 35688888888 9866432
Q ss_pred CCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 411 HHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 411 ~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.. ..+.+||.+.+-.+++++|.+++.|++++++.
T Consensus 413 G~----------~~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 413 GP----------HGNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred CC----------CCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 10 15799999999899999999999999998764
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-20 Score=169.55 Aligned_cols=293 Identities=21% Similarity=0.226 Sum_probs=202.4
Q ss_pred HHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCC
Q 012718 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE 194 (458)
Q Consensus 115 ~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~ 194 (458)
.+.+.++++.|++ +++..++|..|+..++..+ +..|+.|+..+..|.++..-+..+..+.|++...++.+
T Consensus 81 ~le~~iaal~ga~---~~l~fsSGmaA~~~al~~L----~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~--- 150 (409)
T KOG0053|consen 81 VLESGIAALEGAA---HALLFSSGMAAITVALLHL----LPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD--- 150 (409)
T ss_pred HHHHHHHHHhCCc---eEEEecccHHHHHHHHHHh----cCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh---
Confidence 5668899999987 6788888888999999888 68999999999999999988899999999999999887
Q ss_pred CCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCC
Q 012718 195 SPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGP 274 (458)
Q Consensus 195 ~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp 274 (458)
|++.+++.+.+++++|+++.|.||+..+.|+++|+++||++|++++||++.+.+.. .+.-.+|+|+++.|.+|++|+
T Consensus 151 --~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~-~~pL~lGADIV~hSaTKyi~G 227 (409)
T KOG0053|consen 151 --DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN-QDPLPLGADIVVHSATKYIGG 227 (409)
T ss_pred --hHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc-cChhhcCCCEEEEeeeeeecC
Confidence 88999999999999999999999999999999999999999999999999998854 455577899999999999888
Q ss_pred Cc---eeEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-
Q 012718 275 TG---IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE- 349 (458)
Q Consensus 275 ~g---~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~- 349 (458)
.. .|.++.+ ++..+++..... ...++++.....-+. .|++.+.-|+
T Consensus 228 hsdvi~G~iv~n~~~~~~~l~~~~~---------------------~lg~~~~p~~~~ll~--------Rglktl~lRi~ 278 (409)
T KOG0053|consen 228 HSDVIGGSVVLNSEELASRLKFLQE---------------------DLGWCEDPFDLFLLS--------RGLKTLHLRIN 278 (409)
T ss_pred CcceeeeEEecCcHHHHHHHHHHHH---------------------HhcCCCCHHHHHHHh--------cCcchhhhhHH
Confidence 77 7888876 455544442211 112234433322222 2333332222
Q ss_pred --HHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCC--ChHHHHHHHhhhcCeEeccCCCCC
Q 012718 350 --MELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENI--HPTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 350 --~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~--~~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
.+++..+.+.|.+.|.++ ++.|.-..+ .+.++.++|...+. ...+++..|+=- -...+-|...+
T Consensus 279 ~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~~~~a~kf~~~LK~~-~~a~SlG~~eS 357 (409)
T KOG0053|consen 279 KHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGNEEHAKKFYDALKLF-TKAPSLGGNES 357 (409)
T ss_pred HHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCCHHHHHHHHHhhhhh-hcccCcCccch
Confidence 344444666666666655 332221100 12233344444331 233444444311 12223333211
Q ss_pred h---hh----------HhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 415 Q---PL----------HRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 415 ~---~~----------~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
- +. ....|. ++-||+|++. ||++.+++.+.++++.+
T Consensus 358 L~~~p~~mth~~~~e~~~~~Gi~~~LVRvSVGi----Ed~~dL~~d~~~Al~~~ 407 (409)
T KOG0053|consen 358 LAEPPAIMTHASELEEREKFGIDPNLVRVSVGI----EDIEDLIKDFQQALEKA 407 (409)
T ss_pred hhcchhhhccCCCHHHHHhcCCCCCcEEEEecc----CCHHHHHHHHHHHHHhh
Confidence 0 11 112344 6899999997 88888999988888765
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=162.54 Aligned_cols=323 Identities=18% Similarity=0.234 Sum_probs=228.2
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
.++.|-..+.+.+.++..++|.++... ...++ ......++++..|+++|.. .-+|++|||.++.+++
T Consensus 22 ~~vDLRSDTvT~PTdeMr~am~eA~vg--------DdVyG--eD~tt~rLE~~vA~l~GKE---AgLFv~SGTmgNllaI 88 (384)
T KOG1368|consen 22 RSVDLRSDTVTVPTDEMRRAMAEASVG--------DDVYG--EDPTTNRLEQRVAELFGKE---AGLFVPSGTMGNLLAI 88 (384)
T ss_pred eccccccccccCChHHHHHHHhhcccC--------ccccc--CCccHHHHHHHHHHHhCcc---ceeeecccccccHHHH
Confidence 456677778888889888888776432 11111 1233457889999999987 5689999999999998
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC--------CceEEEEeccc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--------KTKLVVIHHIS 218 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~--------~~~~v~~~~~~ 218 (458)
+.-. -++|..|++.+..|...+.. ..++...|+.++.+...+||.+|++++++++.. -+++|++++.+
T Consensus 89 m~Hc---~~rg~eii~gd~~HI~~~E~-gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~ 164 (384)
T KOG1368|consen 89 MVHC---HQRGSEIIVGDRAHIHRYEQ-GGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTH 164 (384)
T ss_pred HHHh---cCCCceEEeccchheeehhc-cChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccc
Confidence 8762 46899999999988755432 235566789999999999999999999999873 36999999999
Q ss_pred CcCc-ccccH---HHHHHHHHhcCcEEEEeccccCCc---ccCCCCCC--CCcEEEecccCCCCCCceeEEEEecccccc
Q 012718 219 NMLA-SILPI---EEIVHWSHDVGAKVLVDACQSVPH---MVVDVQGL--DADFLVASSHKMCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 219 n~tG-~~~~l---~~i~~l~~~~~~~vivD~a~~~g~---~~~~~~~~--~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~ 289 (458)
|.+| .++|+ +++.++|+++|+.+++|++--+-+ ....++++ ..|.+...+||.+|.+=..+++++++.+++
T Consensus 165 ~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI~k 244 (384)
T KOG1368|consen 165 NNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFIDK 244 (384)
T ss_pred cccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHHHH
Confidence 9888 89995 477888999999999999954211 11222222 378899999996664435778888888766
Q ss_pred CCCcc--ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Q 012718 290 MPPFL--GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR 367 (458)
Q Consensus 290 l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~ 367 (458)
-+.+. .|++. -..++++.. +|--+.+ .++ ..++-.+.++.|.+.+.+.++++
T Consensus 245 A~~~RKalGGGm-----------------------RQsGvLaaa-aLval~~-~~~-~L~~dHk~A~~lAe~~~~~~~i~ 298 (384)
T KOG1368|consen 245 ARHFRKALGGGM-----------------------RQSGVLAAA-ALVALDE-NVP-LLRADHKRAKELAEYINTPEEIR 298 (384)
T ss_pred HHHHHHHhcCch-----------------------hHHHHHHHH-HHHHhhc-chH-HHHHHHHHHHHHHHHhcccccee
Confidence 54222 22221 112223322 2222222 133 33444566677777777777788
Q ss_pred EeCCCCCCcCccccEEEEEe--CCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 368 IYGPKPSEHVQRAALCSFNV--ENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
+..+.-. .+++.+.+ +..+.+++++.+.+. ||.+-.+. ...+|+.+++..|.++++.++.
T Consensus 299 v~v~a~e-----tNiv~~~l~q~~~~~~~l~~~~~k~-gi~lm~~~------------s~r~Rivlh~Qvt~~~ve~~~~ 360 (384)
T KOG1368|consen 299 VEVPAVE-----TNIVNMVLCQARLTAEELCKFLEKN-GILLMGGA------------SRRIRIVLHHQVTDEDVEYVKS 360 (384)
T ss_pred eecchhh-----cceeeeecccccCCHHHHHHHHHHC-CeEEeecc------------ccceEEEEEEecCHHHHHHHHH
Confidence 8776422 56665544 577899999999988 99987654 4569999999999999999999
Q ss_pred HHHHH
Q 012718 446 ALNET 450 (458)
Q Consensus 446 ~l~~~ 450 (458)
.+.+.
T Consensus 361 ~~~k~ 365 (384)
T KOG1368|consen 361 VLSKK 365 (384)
T ss_pred HHHHH
Confidence 99543
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-19 Score=171.37 Aligned_cols=336 Identities=13% Similarity=0.111 Sum_probs=215.5
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC--CCCcEEE-eC
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVF-TK 136 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~~v~~-t~ 136 (458)
++.-|+|.. ..|...+.+.+++.+.+.+..... .... ..+...++-+.|++.+..+ ..+.++| ++
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~--~~~~----~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~ 106 (412)
T TIGR02407 33 DGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIH--SLDM----ATEAKREFLETFNEIILKPRGLDYKVQFPGP 106 (412)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhcccee--cccc----CcHHHHHHHHHHHHhccCccCCCceEEEeCC
Confidence 344566642 346778999999999887531111 1100 1233345556666654222 1124666 58
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH----H--cC---CeEEEEeCCCCC---CCCHHHHHHh
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ----K--TG---ANLKFLNLNDDE---SPDLDKLKEM 204 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~----~--~g---~~~~~v~~~~~~---~~d~~~l~~~ 204 (458)
||++|++.+++..+ ....+.+|+....+||+.......+.. + .| ..+..+|...-. .-+++.+++.
T Consensus 107 sGseA~e~AlklAr--~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~ 184 (412)
T TIGR02407 107 TGTNAVESALKLAR--KVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKL 184 (412)
T ss_pred CchHHHHHHHHHHh--hhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHH
Confidence 99999999999764 245567899999999988765444321 1 11 122334432100 1246677877
Q ss_pred hc------CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEeccc
Q 012718 205 LS------RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSH 269 (458)
Q Consensus 205 l~------~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~ 269 (458)
+. +++++|+++.+++..|.+.+ +++|.++|++||+++|+|+++. +|.. ..+.....+|+++ ++
T Consensus 185 ~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~--~~ 262 (412)
T TIGR02407 185 LEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVC--LS 262 (412)
T ss_pred HHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEE--ec
Confidence 75 35688999999999998664 8899999999999999999986 3321 2233345689876 56
Q ss_pred CCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH-HHHhCHHHHH
Q 012718 270 KMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY-LSTIGMQKIH 346 (458)
Q Consensus 270 K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~-~~~~g~~~~~ 346 (458)
|.+|+.| +|+++++++. +.+.+...+ ...+.+....++..++++. +.+ ..+.
T Consensus 263 K~lg~~G~pigav~~~~~~-~~~~~~~~~---------------------~T~~gnpl~~aaa~a~l~~~i~~---~~l~ 317 (412)
T TIGR02407 263 KSISGYGLPLALTLIKPEL-DVWKPGEHN---------------------GTFRGNNLAFVTATAALEYYWSD---DAFE 317 (412)
T ss_pred hhccCCccceeEEEEchhh-hccCCCccC---------------------CCCCccHHHHHHHHHHHHHHhcc---cHHH
Confidence 9777655 8999998875 443321110 1123555556666677774 443 4566
Q ss_pred HHHHHHHHHHHHHHhc----CCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhc
Q 012718 347 AYEMELAKYLYENLLS----IPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~ 421 (458)
++.+++.+++.+.|+. .++... .. ...+.++++.++.. ....+.+.+.++ ||.+.+....
T Consensus 318 ~~~~~~g~~l~~~l~~l~~~~~~~~~--~v----rg~Gl~~~l~l~~~~~~~~~~~~~~~~-Gv~v~~~~~~-------- 382 (412)
T TIGR02407 318 KAVQRKSEIIQERLDRIVAEYPELIK--QV----RGRGLMQGIECGDGDLAGKIAKAAFEN-GLIIETSGPN-------- 382 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceE--ee----ecceeEEEEEecChHHHHHHHHHHHHC-CCEEeccCCC--------
Confidence 6666667777666653 332221 11 12366889988642 345788888888 9998643210
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.+.+|++++..++++|++++++.|++++++
T Consensus 383 --~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 383 --DEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999998864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-19 Score=170.61 Aligned_cols=322 Identities=14% Similarity=0.097 Sum_probs=203.9
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCC--
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSN-- 153 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~-- 153 (458)
.|...+.+.+++.+.+....... ... ..+...++.+.+.+..+. +.++|++||++|++.++..++...
T Consensus 50 lGh~~p~v~~a~~~q~~~~~~~~-~~~------~~~~~~~la~~l~~~~~~---~~v~f~~SGseA~e~Aik~ar~~~~~ 119 (395)
T PRK03715 50 LGHCNPGMVEALAAQAEKLINPS-PAF------YNEPMAKLAGLLTQHSCF---DKVFFANSGAEANEGAIKLARKWGRK 119 (395)
T ss_pred CCCCCHHHHHHHHHHHHhccccc-ccc------cCHHHHHHHHHHhhccCC---CEEEEeCCcHHHHHHHHHHHHHHhhc
Confidence 55557889999998876532111 110 122223344444443322 389999999999999998774210
Q ss_pred C-CCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC----CCCCHHHHHHhhcCCceEEEEecccCcCccccc--
Q 012718 154 L-KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD----ESPDLDKLKEMLSRKTKLVVIHHISNMLASILP-- 226 (458)
Q Consensus 154 ~-~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~----~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~-- 226 (458)
. ...++|++.+..||+.......+....+.+....|.... ...|++.+++.+.+++++|+++.+++..|...|
T Consensus 120 ~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~ 199 (395)
T PRK03715 120 HKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATR 199 (395)
T ss_pred cCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCH
Confidence 0 123678999999998754433332111111111111111 123789999999888999999999999999887
Q ss_pred --HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCc
Q 012718 227 --IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGE 298 (458)
Q Consensus 227 --l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~ 298 (458)
+++|.++|++||+++|+|++|. +|..- .+.....+|+++ ++|.+| +..+|.+++++++.. +.+...
T Consensus 200 ~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t--~gK~lg~G~p~~av~~~~~i~~-~~~~~~--- 273 (395)
T PRK03715 200 EFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMT--LGKGIGGGVPLAALLAKAEVAV-FEAGDQ--- 273 (395)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceee--ehhhhhCCcceEEEEEcccccc-ccCCCc---
Confidence 9999999999999999999987 22211 111233588765 679544 334888888888742 111000
Q ss_pred ceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCC
Q 012718 299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSE 375 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~ 375 (458)
...-+.++...++..++|+.+.+ +.+.++.+++.++|.+.|+++ .++. ..
T Consensus 274 ------------------~~T~~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~i~---~v--- 326 (395)
T PRK03715 274 ------------------GGTYNGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSEERGLE---GE--- 326 (395)
T ss_pred ------------------CCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcCCcC---eE---
Confidence 00113456666777777887765 456777888888888887654 1221 11
Q ss_pred cCccccEEEEEeCCCChHHHHHHH---hhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 376 HVQRAALCSFNVENIHPTDIATLL---DQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 376 ~~~~~~~v~~~~~~~~~~~~~~~l---~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
...+.++.+.+.+.....+.+.+ .++ |+.+.... ...+|++++..+|++||+++++.|+++++
T Consensus 327 -rG~Glm~~i~l~~~~~~~~~~~~~~~~~~-Gi~~~~~~------------~~~lR~~p~l~~t~~ei~~~~~~l~~~l~ 392 (395)
T PRK03715 327 -RGEGLLRALLLGKDIGPQIVEKARDMQPD-GLLLNAPR------------PNLLRFMPALNVTTEEIDQMIAMLRSVLD 392 (395)
T ss_pred -EcceeEEEEEecCchHHHHHHHHHhccCC-CEEEeecC------------CCEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 12366888887643233444333 334 88875321 46899999999999999999999999987
Q ss_pred hh
Q 012718 453 FF 454 (458)
Q Consensus 453 ~~ 454 (458)
++
T Consensus 393 ~~ 394 (395)
T PRK03715 393 KL 394 (395)
T ss_pred hh
Confidence 64
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=160.64 Aligned_cols=163 Identities=26% Similarity=0.300 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC
Q 012718 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND 192 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~ 192 (458)
++++++.++++++.+.+ .+++++|+|+|+.+++.++ .+++++|+++++.|++... ..+...|++++.++.+.
T Consensus 2 ~~~~~~~l~~~~~~~~~-~~~~~~~~t~a~~~~~~~~----~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~ 73 (170)
T cd01494 2 LEELEEKLARLLQPGND-KAVFVPSGTGANEAALLAL----LGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDD 73 (170)
T ss_pred HHHHHHHHHHHcCCCCC-cEEEeCCcHHHHHHHHHHh----CCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCC
Confidence 35788999999975444 8999999999999999998 4568999999999998752 45567799999999876
Q ss_pred CCCCCH--HHHHHhh-cCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccC---CCCCCCCcEEEe
Q 012718 193 DESPDL--DKLKEML-SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---DVQGLDADFLVA 266 (458)
Q Consensus 193 ~~~~d~--~~l~~~l-~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~---~~~~~~~d~~~~ 266 (458)
++..+. +.+++.. .++++++++++++|++|...|+++|.++|+++|+++|+|++|..+.... +....++|+++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~ 153 (170)
T cd01494 74 AGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTF 153 (170)
T ss_pred CCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEE
Confidence 544333 2454433 4578999999999999999999999999999999999999999877754 456677999999
Q ss_pred cccCCCCCCceeEEEEe
Q 012718 267 SSHKMCGPTGIGFLFGK 283 (458)
Q Consensus 267 s~~K~~gp~g~G~l~~~ 283 (458)
|+||++|+.|+|++++|
T Consensus 154 s~~K~~~~~~~G~l~~~ 170 (170)
T cd01494 154 SLHKNLGGEGGGVVIVK 170 (170)
T ss_pred EcccccCCCceEEEEeC
Confidence 99998888889999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=176.08 Aligned_cols=326 Identities=17% Similarity=0.181 Sum_probs=209.5
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|..++.+.+++.+.+.+...+ . ...+...+++++|++.+... +.|+|++||+
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~---~------~~~~~~~~lae~l~~~~~~~--~~v~~~~sGs 114 (423)
T TIGR00713 46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSY---G------APTEAEILLAKEIISRVPSV--EMVRFVNSGT 114 (423)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcC---C------CCCHHHHHHHHHHHHhCCcc--cEEEEeCCHH
Confidence 344566643 23567899999999988763211 1 11334567889999988653 3899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCC-----------------eEEEEeCCCCCCCCHHHHH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-----------------NLKFLNLNDDESPDLDKLK 202 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~-----------------~~~~v~~~~~~~~d~~~l~ 202 (458)
+|+..+++..+ ....+++|+..+++||+.......... .|. .+..++. .|+++++
T Consensus 115 eA~e~Alk~ar--~~~gr~~ii~~~~~yhG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~ 186 (423)
T TIGR00713 115 EATMSAVRLAR--GYTGRDKIIKFEGCYHGHHDALLVKAG-SGAATLGLPTSPGVPEDFAKLTLVLPY-----NDLEALE 186 (423)
T ss_pred HHHHHHHHHHH--HhhCCCEEEEEcCCCCCChhhhhcccc-CcccccCCCCCCCCCcccccceEEeCC-----CCHHHHH
Confidence 99999998653 234668999999999986432222100 010 1111221 1789999
Q ss_pred Hhhc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccCCcc----cCCCCCCCCcEEEecccCC
Q 012718 203 EMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGLDADFLVASSHKM 271 (458)
Q Consensus 203 ~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~~~~d~~~~s~~K~ 271 (458)
+.+. +++++|+++...+.+|.+.| +++|.++|++||+++|+|++|..-.. ........+|++ +++|.
T Consensus 187 ~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~ 264 (423)
T TIGR00713 187 EVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKI 264 (423)
T ss_pred HHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhh
Confidence 8886 56788888755555898887 78999999999999999999962211 011122346754 69997
Q ss_pred CCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHH
Q 012718 272 CGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAY 348 (458)
Q Consensus 272 ~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~ 348 (458)
++ .| +|++++++++++.+..... .. .......+.....+..++++.+.+.+ .+.+.+.
T Consensus 265 l~-~G~pig~v~~~~~i~~~~~~~~~--~~----------------~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~ 325 (423)
T TIGR00713 265 IG-GGLPVGAFGGRREIMERLAPEGP--VY----------------QAGTLSGNPLAMAAGLATLKLLDEEGVYTELDEL 325 (423)
T ss_pred hc-CCCceeeeeEHHHHHHhhCcCCC--ee----------------eccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 76 34 8999999988776653100 00 01122356666777777888776543 3455555
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC--CC---------C---hHHHHHHHhhhcCeEeccCCCCC
Q 012718 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE--NI---------H---PTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~---------~---~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
...+.+.|.+.+++. ++..... ..+.++.+.+. .. + ...+.+.+.++ ||.+.++.
T Consensus 326 ~~~~~~~l~~~~~~~-~~~~~v~------~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--- 394 (423)
T TIGR00713 326 AKRLAEGLSEVLEDT-GIPHTVN------RVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDK-GVFLPPSQ--- 394 (423)
T ss_pred HHHHHHHHHHHHHhc-CCCeEEE------eeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHC-CeEEecCC---
Confidence 566666666666655 3322111 11455554332 11 1 12577778887 99986432
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.+.+|+++. .+++|+++++++|++++++
T Consensus 395 ---------~~~~~l~~~--~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 395 ---------FEACFLSAA--HTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred ---------ccceeeECC--CCHHHHHHHHHHHHHHHhh
Confidence 235788876 6999999999999998865
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-18 Score=168.70 Aligned_cols=339 Identities=13% Similarity=0.125 Sum_probs=216.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+....... . ...+...++-+.|++.++...+ .+.|++||+
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~--~----~~~~~~~~la~~L~~~~p~~~~-~v~f~~sGs 111 (443)
T PRK08360 39 EGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPI--Y----GFPVEPLLLAEKLIEIAPGDNP-KVSFGLSGS 111 (443)
T ss_pred CCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCcccc--c----cCcHHHHHHHHHHHHhCCCCCC-EEEEcCCHH
Confidence 344566642 35567889999999998764221110 0 0122334566677777754433 899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-----cC----CeEEEEeCCCCCC------------CCH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG----ANLKFLNLNDDES------------PDL 198 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~g----~~~~~v~~~~~~~------------~d~ 198 (458)
+|++.+++..+ ....+.+|+....+||+.......+... .+ ..+..++...... .++
T Consensus 112 EAve~AlklAr--~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
T PRK08360 112 DANDGAIKFAR--AYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECV 189 (443)
T ss_pred HHHHHHHHHHH--HhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHH
Confidence 99999998764 2455678999999999876443332110 00 1133333321100 123
Q ss_pred HHHHHhhc-----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEE
Q 012718 199 DKLKEMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFL 264 (458)
Q Consensus 199 ~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~ 264 (458)
+.+++.+. +++++|+++..++++|.+++ +++|.++|++||+++|+|++|. +|... .......+|++
T Consensus 190 ~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDii 269 (443)
T PRK08360 190 EYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDII 269 (443)
T ss_pred HHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEE
Confidence 44556553 46899999999999999887 8899999999999999999987 33221 11123457876
Q ss_pred EecccCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 265 VASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 265 ~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
+ ++|.+|+ ..+|++++++++++.+.....+ + ....+.....+..++++.+.+.
T Consensus 270 t--lsK~l~~G~pigav~~~~~i~~~~~~~~~~--------------------~-T~~~~p~~~aaa~a~l~~l~~~--- 323 (443)
T PRK08360 270 T--LGKPLGGGLPISATIGRAEIMDSLPPLAHA--------------------F-TLSGNPVASAAALAVIEEIEEK--- 323 (443)
T ss_pred E--ecccccCCceeEEEEEcHHHHhhhcCCCCC--------------------C-CCCcCHHHHHHHHHHHHHHHHc---
Confidence 4 6997763 2289999998887766432110 1 1234455566666777777653
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC---------ChHHHHHHHhhhcCeEeccCCCC
Q 012718 344 KIHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI---------HPTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
.+.++.+++.+++.+.|+++. ...+.... ...+.++.+.+... ....+.+.+.++ |+.+.+..
T Consensus 324 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v----rg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~-- 396 (443)
T PRK08360 324 NLLKRAEKLGNYTKKRLEEMKKKHELIGDV----RGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWEL-GLIVTFFS-- 396 (443)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeeee----eccceEEEEEEecCCcccCccHHHHHHHHHHHHHC-CeEEeecC--
Confidence 356677777777777665430 11111111 12355666666321 124677788888 99875321
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.+|+++++.+|++||++++++++++++.+.+
T Consensus 397 ----------~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 397 ----------GNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE 429 (443)
T ss_pred ----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999987654
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-18 Score=172.54 Aligned_cols=362 Identities=16% Similarity=0.132 Sum_probs=239.2
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
-|+.|-...+.+++++..+...+ + |++...+..++.......++.+.+++++|.+.. ..+||+|||.|+..++..
T Consensus 85 ry~ghm~~~~~~paila~~~a~~--~--N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~-~G~~TsGGT~ANl~aL~~ 159 (608)
T TIGR03811 85 RYWGHMNSETLMPAILAYNYAML--W--NGNNVAYESSPATSQMEEEVGKEFATLMGYKNG-WGHIVADGSLANLEGLWY 159 (608)
T ss_pred ceEEECcCCCCHHHHHHHHHHHH--h--CCCCCccccCchHHHHHHHHHHHHHHHhCCCCC-CeEEeCChHHHHHHHHHH
Confidence 47777777777776665443332 2 333344555666788888899999999999865 678999999999988776
Q ss_pred cCCCC--------CC----------------------------------------CC------CEEEEcCCCCccchHHH
Q 012718 149 WGLSN--------LK----------------------------------------SG------DEVILTVAEHHSAIVPW 174 (458)
Q Consensus 149 l~~~~--------~~----------------------------------------~g------~~vl~~~~~~~s~~~~~ 174 (458)
.+... .. +| -+++++...|+ .|
T Consensus 160 AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHy----S~ 235 (608)
T TIGR03811 160 ARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHY----SW 235 (608)
T ss_pred HHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccH----HH
Confidence 54211 00 00 05788887788 55
Q ss_pred HHHHHHcCC---eEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecccCcCcccccHHHHHHHH---HhcCc--E
Q 012718 175 QLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNMLASILPIEEIVHWS---HDVGA--K 240 (458)
Q Consensus 175 ~~~a~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~l~~i~~l~---~~~~~--~ 240 (458)
.+.+...|+ .++.||+++++.+|++.|++.|++ .+-+|+.+..++.+|.+.|+++|+++| +++|+ |
T Consensus 236 ~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~ 315 (608)
T TIGR03811 236 LKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFY 315 (608)
T ss_pred HHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCcee
Confidence 777777888 599999999999999999998864 245788889999999999999999999 66887 6
Q ss_pred EEEeccccCCc---c--------cCC--------------------------CCC-CCCcEEEecccC-CCCCCceeEEE
Q 012718 241 VLVDACQSVPH---M--------VVD--------------------------VQG-LDADFLVASSHK-MCGPTGIGFLF 281 (458)
Q Consensus 241 vivD~a~~~g~---~--------~~~--------------------------~~~-~~~d~~~~s~~K-~~gp~g~G~l~ 281 (458)
+|||+|++... + |.+ +.. ..+|.++.++|| .+.|.++|+++
T Consensus 316 lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll 395 (608)
T TIGR03811 316 LHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIV 395 (608)
T ss_pred EeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEE
Confidence 99999999642 1 110 001 248999999999 56699999999
Q ss_pred Eecccccc-C---CCccccCcceEeeecCCCCCCCCCCc-cCCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHH
Q 012718 282 GKSDLLSA-M---PPFLGGGEMISDVFLDHSTFADPPSR-FEAGTPAIGEAIGLGAAIDYL--STIGMQKIHAYEMELAK 354 (458)
Q Consensus 282 ~~~~~~~~-l---~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~gt~~~~~~~~l~~al~~~--~~~g~~~~~~~~~~l~~ 354 (458)
+|+..+.. + .++....+ ......... ...|+.+-...++++.+++.+ ...|+.++.++..++++
T Consensus 396 ~Rd~~~~~~~~~~a~Yl~~~~---------~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~ 466 (608)
T TIGR03811 396 IQDIRMRDVISYFATYVFEKG---------ADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAH 466 (608)
T ss_pred EeCHHHHHHHhcCcchhcccc---------ccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99863222 2 12221100 000000011 113444445677888888887 66689999999999999
Q ss_pred HHHHHHhcC------CCEEE--eCCCCCCcCccccEEEEEeC--CCC----hHHHHHHHhhhcCe----------EeccC
Q 012718 355 YLYENLLSI------PNIRI--YGPKPSEHVQRAALCSFNVE--NIH----PTDIATLLDQQYGV----------ATRSG 410 (458)
Q Consensus 355 ~l~~~L~~~------~~~~~--~~~~~~~~~~~~~~v~~~~~--~~~----~~~~~~~l~~~~gi----------~~~~g 410 (458)
++.+.|.+. +.+++ ..++ . .++|+|++. +.+ .+++.+.+.++..+ .++..
T Consensus 467 ~~~~~L~~~~~~~~~~~~el~~~~~p-d-----lniV~Fr~~~~g~~~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t 540 (608)
T TIGR03811 467 RFYDFLNNLEFKVGDKEIEVHPLTKP-D-----FNMVDYVFNEKGNDDLVKMNKLNHAFYDYASYVKGSIYNNEFITSHT 540 (608)
T ss_pred HHHHHHHhcccccCCCCeeEEecCCC-C-----cceEEEEEecCCCccHHHHHHHHHHHHHhhccccCCCCCcceEeeec
Confidence 999999883 45665 3322 2 778999874 322 34455555444222 22222
Q ss_pred CCCCh-------hhHhhcCCC----------CeEEEeeC--CCCCHHHHHHHHHHHHHHHHhh
Q 012718 411 HHCAQ-------PLHRYLGVN----------ASARASLH--FYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 411 ~~~~~-------~~~~~~g~~----------~~lRis~~--~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.++.. .....+|.. ..+|.++. +.++.+-++.+++.|++++++.
T Consensus 541 ~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~~~~~~~~~~~~ 603 (608)
T TIGR03811 541 DFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDEYAPKIKAAMQEK 603 (608)
T ss_pred ccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHHHHHHHHHHHHHH
Confidence 22211 111223332 36887764 3345578888888888887653
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=157.10 Aligned_cols=331 Identities=21% Similarity=0.228 Sum_probs=236.6
Q ss_pred CCCeEEecCC-CCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 65 SKKLVYLDNA-ATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 65 ~~~~i~l~~~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
++.+++|..+ ..| ...+++.++-.+.++++...+....... +.......++..+|++.+.+ +.++.+++-.|+
T Consensus 66 ~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIc--Gtq~iHk~LE~kiAqfh~rE---D~ilypscfdAN 140 (417)
T KOG1359|consen 66 DKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFIC--GTQDIHKLLESKIAQFHGRE---DTILYPSCFDAN 140 (417)
T ss_pred ccceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEe--cchHHHHHHHHHHHHHhCCC---ceEEeccccccc
Confidence 4566666544 444 3457788888888888766654333322 24566777889999998876 667888888899
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc----CCceEEEEeccc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHIS 218 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~ 218 (458)
..++.++ ++|.|.|+.....|.|++.... +|++++ .+|+.+++..+. -+-++|+.+..-
T Consensus 141 ag~feai----l~pedAvfSDeLNhASIIdGir-Lckry~------------h~dv~~l~~~l~~a~k~r~klv~TDg~F 203 (417)
T KOG1359|consen 141 AGAFEAI----LTPEDAVFSDELNHASIIDGIR-LCKRYR------------HVDVFDLEHCLISACKMRLKLVVTDGVF 203 (417)
T ss_pred hHHHHHh----cChhhhhhccccccchhhhhhH-HHhhhc------------cchhHHHHHHHHHhhhheEEEEEeccee
Confidence 9999888 7899999999999999887654 455332 225555555443 366899999999
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCC-------C-CCCCcEEEecccCCCCCCceeEEEEeccccccC
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV-------Q-GLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM 290 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~-------~-~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l 290 (458)
++.|.+.|+++|.+++++||+++++|++|+.|.....- . .-++|++.++++|..|..-.|+..+++.++..+
T Consensus 204 SMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~li~ll 283 (417)
T KOG1359|consen 204 SMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLL 283 (417)
T ss_pred ccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCChhHHHHH
Confidence 99999999999999999999999999999965542210 0 124899999999977755579999999876555
Q ss_pred C----CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Q 012718 291 P----PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366 (458)
Q Consensus 291 ~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~ 366 (458)
+ |++. +.+.++.-......+++.+.. -.++..+.+.+.+++++.++.. |+
T Consensus 284 rqr~RpylF-----------------------SnslppavV~~a~ka~dllm~--s~~~i~~~~a~~qrfr~~me~a-Gf 337 (417)
T KOG1359|consen 284 RQRSRPYLF-----------------------SNSLPPAVVGMAAKAYDLLMV--SSKEIQSRQANTQRFREFMEAA-GF 337 (417)
T ss_pred HhcCCceee-----------------------cCCCChhhhhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 4 3322 123332222333344555544 3566778888999999999877 99
Q ss_pred EEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 367 RIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
++.+.. -|+..+-+-+ ....+..+.|.++ ||++-..+++..|. ....+|+.++..+|+||||++++
T Consensus 338 tIsg~~-------hPI~pv~lGda~lA~~~ad~lLk~-Gi~Vigfs~PvVP~-----gkariRVqiSAaHt~edid~~i~ 404 (417)
T KOG1359|consen 338 TISGAS-------HPICPVMLGDARLASKMADELLKR-GIYVIGFSYPVVPK-----GKARIRVQISAAHTEEDIDRLIE 404 (417)
T ss_pred eecCCC-------CCccceecccHHHHHHHHHHHHhc-CceEEeecCCcCCC-----CceEEEEEEehhcCHHHHHHHHH
Confidence 998765 4555554432 2345778888888 99997666554443 14578888888899999999999
Q ss_pred HHHHHHHhhhc
Q 012718 446 ALNETVSFFNV 456 (458)
Q Consensus 446 ~l~~~~~~~~~ 456 (458)
++.++.+..+.
T Consensus 405 Af~~vgr~~~~ 415 (417)
T KOG1359|consen 405 AFSEVGRFLNV 415 (417)
T ss_pred HHHHHHHhhcc
Confidence 99998876543
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-18 Score=168.62 Aligned_cols=335 Identities=14% Similarity=0.139 Sum_probs=210.7
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+... . .... -..+...++-+.|++++.....+.++|+++|+
T Consensus 31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~-~--~~~~---~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs 104 (420)
T TIGR00700 31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTH-T--CFMV---TPYEGYVALAEKLNRIAPGSGPKKSVFFNSGA 104 (420)
T ss_pred CCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccC-c--cccc---cCChHHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence 344566642 2456678999999998876421 1 1100 01122335556677776432223899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-----HcCC-----eEEEEeCCCCCC-----------CCH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KTGA-----NLKFLNLNDDES-----------PDL 198 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-----~~g~-----~~~~v~~~~~~~-----------~d~ 198 (458)
+|++.+++..+ ....+.+|+....+||+.......+.. ..+. .+..++...... -++
T Consensus 105 eA~e~AlklAr--~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (420)
T TIGR00700 105 EAVENAVKIAR--SYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGEL 182 (420)
T ss_pred HHHHHHHHHHH--HhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHH
Confidence 99999998764 245566899999999988765444311 1111 123333321100 024
Q ss_pred HHHHHhhc-----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc--cC--CCCCCCCcEE
Q 012718 199 DKLKEMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQGLDADFL 264 (458)
Q Consensus 199 ~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~--~~--~~~~~~~d~~ 264 (458)
+.+++.+. +++.+|+++.++..+|..++ +++|.++|++||+++|+|++|. ++.. .. ......+|++
T Consensus 183 ~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~ 262 (420)
T TIGR00700 183 AAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLI 262 (420)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEE
Confidence 56666652 46799999999999999887 8999999999999999999987 3221 11 1123347866
Q ss_pred EecccCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 265 VASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 265 ~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
+ ++|.+++ ..+|++++++++++.+.....+ ...+.+....+++.++++.+.+.+
T Consensus 263 ~--lsK~l~~G~pig~v~~~~~i~~~~~~~~~~---------------------~T~~~~pl~~aaa~a~l~~l~~~~-- 317 (420)
T TIGR00700 263 T--TAKSLADGLPLSGVTGRAEIMDAPAPGGLG---------------------GTYAGNPLACAAALAVLAIIESEG-- 317 (420)
T ss_pred E--eeccccCCcceEEEEecHHHHhhcCCCCcC---------------------CCCCcCHHHHHHHHHHHHHHHhcc--
Confidence 5 8996662 2299999999887766532211 112355566667777788776543
Q ss_pred HHHHHHHHHHHHHHHHHh----cCCCEEEeCCCCCCcCccccEEEEEeCCC----C----hHHHHHHHhhhcCeEeccCC
Q 012718 344 KIHAYEMELAKYLYENLL----SIPNIRIYGPKPSEHVQRAALCSFNVENI----H----PTDIATLLDQQYGVATRSGH 411 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~----~~~~~~~l~~~~gi~~~~g~ 411 (458)
+.++.+++.+++.+.|+ .++.+..... .|.++++.+.+. + ...+.+.+.++ ||.+.++.
T Consensus 318 -~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg-------~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~p~~ 388 (420)
T TIGR00700 318 -LIERARQIGRLVTDRLTTLKAVDPRIGDVRG-------LGAMIAVELVDPGTTEPDAGLAERIATAAHAA-GLLLLTCG 388 (420)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCCEEEeec-------cceEEEEEEecCCCCCccHHHHHHHHHHHHHC-CeEEeccC
Confidence 34444444455555443 3433332222 266777766321 1 23455566677 99998764
Q ss_pred CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 412 ~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
.+ .+++|++++...+++++++++++|.++++
T Consensus 389 ~f----------~~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 389 MF----------GNIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred CC----------CCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 22 36899999876799999999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-19 Score=174.44 Aligned_cols=341 Identities=15% Similarity=0.143 Sum_probs=221.2
Q ss_pred CeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+--|+|.. ..|...+.+.+++.+.+.+...... . -..+...++.+.|++.+.... +.+.|++||++
T Consensus 81 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~-~------~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGsE 152 (459)
T PRK11522 81 GQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQ-E------LLDPLRAMLAKTLAALTPGKL-KYSFFCNSGTE 152 (459)
T ss_pred CCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCccccc-c------cCCHHHHHHHHHHHHhCCCCC-CEEEEeCCchH
Confidence 44566642 3456788999999998876432211 1 113334456677777765433 38999999999
Q ss_pred HHHHHHHHcCCCCCCC-CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC----CCCCHHHHHHhhc------CCc
Q 012718 141 AINLVAYSWGLSNLKS-GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD----ESPDLDKLKEMLS------RKT 209 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~-g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~----~~~d~~~l~~~l~------~~~ 209 (458)
|++.+++..+...-++ +.+|+....+||+.......+...........|..++ -..|.+++++.++ +++
T Consensus 153 Ave~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i 232 (459)
T PRK11522 153 SVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDV 232 (459)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcE
Confidence 9999998664211112 4579999999998765433321110011000111111 0116778887775 356
Q ss_pred eEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC--Ccee
Q 012718 210 KLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP--TGIG 278 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp--~g~G 278 (458)
.+|+++.++...|.+.| ++++.++|++||+++|+|++|. +|.. -.......+|+++ ++|.+|. ..+|
T Consensus 233 AavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lggG~~Pig 310 (459)
T PRK11522 233 AAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILC--LAKALGGGVMPIG 310 (459)
T ss_pred EEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEE--echhhhCCCccce
Confidence 89999999999999988 9999999999999999999985 3321 1112233489875 7895543 2488
Q ss_pred EEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCC--CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012718 279 FLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGT--PAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYL 356 (458)
Q Consensus 279 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l 356 (458)
.+++++++.+.+..... ...+| .++...++..++|+.+.+ +.+.++.+++.++|
T Consensus 311 av~~~~~i~~~~~~~~~---------------------~~~~T~~gnp~~~Aaala~L~~i~~---~~l~~~~~~~g~~l 366 (459)
T PRK11522 311 ATIATEEVFSVLFDNPF---------------------LHTTTFGGNPLACAAALATINVLLE---QNLPAQAEQKGDYL 366 (459)
T ss_pred eEEEcHHHHHHhccCCc---------------------ccCCCCCCCHHHHHHHHHHHHHHhc---chHHHHHHHHHHHH
Confidence 88888877654421000 01123 366677777788888766 35678888888888
Q ss_pred HHHHhcCC-CEE-EeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC
Q 012718 357 YENLLSIP-NIR-IYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF 433 (458)
Q Consensus 357 ~~~L~~~~-~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~ 433 (458)
.+.|+++. .+. +.... ...+.++.+.+... ....+.+.+.++ ||.+.+.. .....+|+.++.
T Consensus 367 ~~~L~~l~~~~~~~i~~V----rG~Gl~~giel~~~~~~~~i~~~l~~~-Gvl~~~~~----------~~~~~lr~~Ppl 431 (459)
T PRK11522 367 LDGFRQLAREYPDLVQEA----RGKGMLMAIEFVDNEIGYNFASEMFRQ-RVLVAGTL----------NNAKTIRIEPPL 431 (459)
T ss_pred HHHHHHHHHhCCCceeeE----EeceeEEEEEecCchHHHHHHHHHHHC-CeEEEecC----------CCCCEEEEECCc
Confidence 88887641 111 11111 12366788877542 245688888888 99986431 114689999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhc
Q 012718 434 YNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+|++||++++++|+++++++.+
T Consensus 432 ~~t~~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 432 TLTIEQCEQVLKAARKALAAMRV 454 (459)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987654
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-19 Score=173.57 Aligned_cols=331 Identities=13% Similarity=0.106 Sum_probs=211.5
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.|...+.+.+++.+.+.+...... +. ...+...++.+.|+++++-.. +.++|++||++|+..++...+ .+.
T Consensus 57 lGh~~p~v~~a~~~q~~~~~~~~~-~~-----~~~~~~~~la~~L~~~~~~~~-~~v~f~~SGseA~e~AlklAr--~~t 127 (433)
T PRK08117 57 VGHRHPKVVQAIKEQADKLMHGPS-GV-----IYYESILKLAEELAEITPGGL-DCFFFSNSGAEAIEGALKLAK--HVT 127 (433)
T ss_pred CCCCCHHHHHHHHHHHHhccCccc-cc-----cCCHHHHHHHHHHHHhCCCCC-CEEEEeCcHHHHHHHHHHHHH--Hhc
Confidence 345778899999998876422110 00 113445567788888874222 389999999999999998653 234
Q ss_pred CCCEEEEcCCCCccchHHHHHHHH-----HcCC-----eEEEEeCCCCCC------------CCHHHHHHhhc-----CC
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQ-----KTGA-----NLKFLNLNDDES------------PDLDKLKEMLS-----RK 208 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~-----~~g~-----~~~~v~~~~~~~------------~d~~~l~~~l~-----~~ 208 (458)
.+.+|+..+.+||+.......+.. +.+. .+..+|...... -|++++++.++ .+
T Consensus 128 gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 207 (433)
T PRK08117 128 KRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEE 207 (433)
T ss_pred CCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCc
Confidence 557899999999987654332210 0000 123333321110 14566666653 35
Q ss_pred ceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccC-Ccc--cCCCCC--CCCcEEEecccCCCCC-Ccee
Q 012718 209 TKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV-PHM--VVDVQG--LDADFLVASSHKMCGP-TGIG 278 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~-g~~--~~~~~~--~~~d~~~~s~~K~~gp-~g~G 278 (458)
+.+|+++.+....|.+.| +++|.++|++||+++|+|++|.. |.. .+.... ..+|+ .+++|.+|+ ..+|
T Consensus 208 ~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi--~t~sK~lg~G~pig 285 (433)
T PRK08117 208 VAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDI--MTIAKGIASGLPLS 285 (433)
T ss_pred EEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCE--eehhhhccCCCcce
Confidence 789999999999999998 99999999999999999999982 111 111122 23665 579997663 2289
Q ss_pred EEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012718 279 FLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYE 358 (458)
Q Consensus 279 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~ 358 (458)
+++.++++++.+.....+. ..+.+....++..++++.+.+ +.+.++++++.+++.+
T Consensus 286 av~~~~~i~~~~~~~~~~~---------------------T~~~np~~~aaa~a~L~~l~~---~~l~~~~~~~g~~l~~ 341 (433)
T PRK08117 286 AVVASKELMEQWPLGSHGT---------------------TFGGNPVACAAALATLEVIKE---EKLLDNANEMGAYALE 341 (433)
T ss_pred eEEEcHHHHhhccCCCCCC---------------------CCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHH
Confidence 9999988776554221110 113466667777777877754 3456667777777777
Q ss_pred HHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC-------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 359 NLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI-------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 359 ~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
.|.++. .+.+.... ...+.++.+.+... ....+.+.+.++ ||.+.+.. ...+.+|++
T Consensus 342 ~L~~l~~~~~~~~~v----rg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~g----------~~~~~lRl~ 406 (433)
T PRK08117 342 RLEVLKEKHPVIGDV----RGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEK-GLLFYLCG----------NAGNVLRMI 406 (433)
T ss_pred HHHHHHhcCCceeee----ecCCcEEEEEEecCCCCcchHHHHHHHHHHHHC-CCEEeecC----------CCCCEEEEe
Confidence 776541 11111111 12244666666321 134567777887 99875421 014689999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 431 LHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
++..+|++||++++++|.++++++.+
T Consensus 407 p~~~~t~~~i~~~~~~l~~~l~~~~~ 432 (433)
T PRK08117 407 PPLTVTKEEIDEGLDILDEALTEYEA 432 (433)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHhc
Confidence 99889999999999999999987643
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-18 Score=168.07 Aligned_cols=335 Identities=13% Similarity=0.154 Sum_probs=213.3
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+.... ... .. ..+...++-+.|+++......+.++|+++|+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~-~~~-~~----~~~~~~~la~~l~~~~p~~~~~~~~f~~sGs 111 (421)
T PRK06777 38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHT-AYQ-IV----PYASYVTLAERINALAPIDGPAKTAFFTTGA 111 (421)
T ss_pred CCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccc-ccc-cc----CChHHHHHHHHHHHhCCCCCCceEEEeCCcH
Confidence 344566642 24567788999999988764211 110 00 1122335556677776532223899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-----cCC-----eEEEEeCCCCC-----CCCHHHHHHh
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TGA-----NLKFLNLNDDE-----SPDLDKLKEM 204 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~g~-----~~~~v~~~~~~-----~~d~~~l~~~ 204 (458)
+|++.+++..+ ....+.+|+....+||+.......+... .+. .+..++..... ..+++.+++.
T Consensus 112 eA~e~AlklAr--~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~ 189 (421)
T PRK06777 112 EAVENAVKIAR--AYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERL 189 (421)
T ss_pred HHHHHHHHHHH--HhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHH
Confidence 99999998764 2455668999999999887554433110 000 11222222111 1135667776
Q ss_pred hc-----CCceEEEEecccCcCcccc-c---HHHHHHHHHhcCcEEEEecccc-CCcc--cCCCC--CCCCcEEEecccC
Q 012718 205 LS-----RKTKLVVIHHISNMLASIL-P---IEEIVHWSHDVGAKVLVDACQS-VPHM--VVDVQ--GLDADFLVASSHK 270 (458)
Q Consensus 205 l~-----~~~~~v~~~~~~n~tG~~~-~---l~~i~~l~~~~~~~vivD~a~~-~g~~--~~~~~--~~~~d~~~~s~~K 270 (458)
+. +++++|+++.+++..|... | +++|.++|++||+++|+|++|. +|.. ..... ...+|++ +++|
T Consensus 190 ~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv--~~sK 267 (421)
T PRK06777 190 FKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLI--TMAK 267 (421)
T ss_pred HHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEE--eeeh
Confidence 64 3578999999999999654 4 8999999999999999999987 2221 11112 2347866 5899
Q ss_pred CCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 012718 271 MCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349 (458)
Q Consensus 271 ~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 349 (458)
.+++ ..+|+++.++++++.+.+...+ ...+.+....++..++|+.+.+ +.+.++.
T Consensus 268 ~l~~G~pigav~~~~~i~~~~~~~~~~---------------------~T~~~~p~~~aaa~a~L~~~~~---~~l~~~~ 323 (421)
T PRK06777 268 SLGGGMPISAVVGRAEVMDAPAPGGLG---------------------GTYAGNPLAVAAALAVLDVIAE---EKLCQRA 323 (421)
T ss_pred hhcCCCceEEEEEcHHHHhccCCCCCC---------------------CCCCcCHHHHHHHHHHHHHHHh---ccHHHHH
Confidence 6662 2289999998887766532211 1123566667777778877765 4567777
Q ss_pred HHHHHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCC----CC----hHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 350 MELAKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVEN----IH----PTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 350 ~~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~----~~----~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
+++.+++.+.|+++ +.+..... .|.++.+.+.. .+ ...+...+.++ ||.+.++..+
T Consensus 324 ~~~g~~l~~~L~~l~~~~~~i~~vrg-------~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~~---- 391 (421)
T PRK06777 324 LILGAHLVEVLEKAKASCPAIVDIRA-------RGSMVAVEFNDPQTGKPSPEFTRQYQRQALEE-GLLLLSCGVH---- 391 (421)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEecC-------ceEEEEEEEecCccCCccHHHHHHHHHHHHhC-CeEEeecCCC----
Confidence 77888888777654 33322222 25565554432 11 23344555677 9999775411
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
.+++|+++++..+++++++++++|++++.
T Consensus 392 ------g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 392 ------GNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred ------CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 36899999888999999999999998874
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=156.93 Aligned_cols=349 Identities=15% Similarity=0.159 Sum_probs=206.5
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCC---cch-hhhHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCChhH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG---IHF-LSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATE 140 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~ 140 (458)
++.+.|..|.+...| ++.+..++...+....-... +.+ ...+-...++.+.+.+.+-+|.+ .+.+|.+|+|++.
T Consensus 30 ~g~imLggGNPa~iP-em~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs 108 (417)
T COG3977 30 PGAIMLGGGNPARIP-EMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQS 108 (417)
T ss_pred CCceeeCCCCcccCh-hHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccc
Confidence 556777666555444 44555555444322211000 011 11122344445555555555554 2249999999999
Q ss_pred HHHHHHHHcCCCCCCCCC--EEEEc-CCCCccchHHHHHHHHHcCCeEEEEeC----CCC----CCCCHHHHHHhhcCCc
Q 012718 141 AINLVAYSWGLSNLKSGD--EVILT-VAEHHSAIVPWQLVAQKTGANLKFLNL----NDD----ESPDLDKLKEMLSRKT 209 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~--~vl~~-~~~~~s~~~~~~~~a~~~g~~~~~v~~----~~~----~~~d~~~l~~~l~~~~ 209 (458)
+...+...++.+. ..|+ +|+.+ .|+|.+ +..++-. +--.+.+.. .+. +.+|.+.|. +.+.+
T Consensus 109 ~fFYlfNlF~G~~-sdG~~k~illPLaPeYiG----Y~d~~l~-~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~ 180 (417)
T COG3977 109 AFFYLFNLFAGRR-SDGTEKKILLPLAPEYIG----YADAGLE-EDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGEST 180 (417)
T ss_pred hHHHHHHHhcCcc-CCCcceeEeeccChhhcc----ccccccC-ccceeeccCCcccccccceeeccCHHHcc--ccccc
Confidence 9999998876422 2232 45554 677763 2222100 001121111 111 466777765 56789
Q ss_pred eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcccCCCCCC-----CCcEEEecccCCCCCCc-eeEE
Q 012718 210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL-----DADFLVASSHKMCGPTG-IGFL 280 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~-----~~d~~~~s~~K~~gp~g-~G~l 280 (458)
.+|+++.|.||||.++. +.+|.+++++||+.+++|.+|+.+.-.+.+.+. ..-+.+.|.||..=|.- ||++
T Consensus 181 g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIi 260 (417)
T COG3977 181 GAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSKLGLPGSRCGII 260 (417)
T ss_pred ceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEeehhhcCCCCcceeEE
Confidence 99999999999999997 667888899999999999999976654443332 25677889999654433 9999
Q ss_pred EEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH--HHHHhCHHHHHHHHHHHHH----
Q 012718 281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID--YLSTIGMQKIHAYEMELAK---- 354 (458)
Q Consensus 281 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~--~~~~~g~~~~~~~~~~l~~---- 354 (458)
+.++++++.+...-.--. ...|.. .+.++. ..++ .+.+..-+.++-.+++..+
T Consensus 261 Iane~viqaitnmn~iis------------------Lap~~~--G~Aia~-~mie~gdl~rlseqVIrPFY~~~~q~~~~ 319 (417)
T COG3977 261 IANEKVIQAITNMNGIIS------------------LAPGRM--GPAIAA-EMIESGDLLRLSEQVIRPFYRNRVQTTIA 319 (417)
T ss_pred EccHHHHHHHHhccceee------------------ecCCCc--cHHHHH-HHhhcchHHHHHHHhhhHHHHHHHHHHHH
Confidence 999998877654321000 011111 111221 1111 1111111233333334444
Q ss_pred HHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCC-CCeEEEe
Q 012718 355 YLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV-NASARAS 430 (458)
Q Consensus 355 ~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~-~~~lRis 430 (458)
.|+..|.+. .+.+..+. |. ++|+.+. .++..++.++|+++ |+.+.||+++-+.+...|-. ...+|++
T Consensus 320 ~l~~~lp~~-~~~iHkpE-------GAIFlWLWf~dLPItt~~LYq~LKa~-Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn 390 (417)
T COG3977 320 ILRRYLPEY-RCLIHKPE-------GAIFLWLWFKDLPITTEELYQRLKAR-GVLMVPGHYFFPGLDKEWPHTHQCMRMN 390 (417)
T ss_pred HHHHhcCcc-ceeeecCC-------cceeehhhhccCCCCHHHHHHHHHhC-eEEEecccccCCCCCCCCCCccceEEEe
Confidence 444444333 34444443 54 6666665 36789999999999 99999999776544333322 5789999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 431 LHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.. -+++.|++.+++|.+.++++-
T Consensus 391 ~~--~~~~~ie~Gva~lae~ve~~y 413 (417)
T COG3977 391 YV--PEPEKIEKGVAILAEEVERAY 413 (417)
T ss_pred cC--CCHHHHHHHHHHHHHHHHHHH
Confidence 88 588999999999999988753
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-18 Score=167.02 Aligned_cols=330 Identities=16% Similarity=0.158 Sum_probs=215.9
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+...... . -..+...++-+.|++.+.... +.++|++||+
T Consensus 73 dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~---~----~~~~~~~~lAe~L~~~~p~~~-~~v~f~~SGs 144 (442)
T TIGR03372 73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQ---E----LLDPLRALLAKTLAALTPGKL-KYSFFCNSGT 144 (442)
T ss_pred CCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCccc---c----cCCHHHHHHHHHHHHhCCCCc-CEEEEeCCch
Confidence 455667742 3556788999999998876532211 1 112334456677777765433 3789999999
Q ss_pred HHHHHHHHHcCCCCC-CCCCEEEEcCCCCccchHHHHHHHHH----cC-----CeEEEEeCCCCCCCCHHHHHHhhc---
Q 012718 140 EAINLVAYSWGLSNL-KSGDEVILTVAEHHSAIVPWQLVAQK----TG-----ANLKFLNLNDDESPDLDKLKEMLS--- 206 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~-~~g~~vl~~~~~~~s~~~~~~~~a~~----~g-----~~~~~v~~~~~~~~d~~~l~~~l~--- 206 (458)
+|++.+++..+.... +.+.+|+....+||+.......+... .+ ..+..+|.+ |++.+++.++
T Consensus 145 EA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~ 219 (442)
T TIGR03372 145 ESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECK 219 (442)
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHh
Confidence 999999986642111 23568999999999886544433111 00 012333332 6677766664
Q ss_pred ---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecccCCCC-
Q 012718 207 ---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCG- 273 (458)
Q Consensus 207 ---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~g- 273 (458)
+++.+|+++.+....|...| ++++.++|++||+++|+|++|. +|... .......+|+++ ++|.+|
T Consensus 220 ~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg~ 297 (442)
T TIGR03372 220 KTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC--LAKALGG 297 (442)
T ss_pred cCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeee--ehhhhcC
Confidence 35789999999999999998 9999999999999999999995 43221 111233489887 899554
Q ss_pred C-CceeEEEEeccccccCC--CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 012718 274 P-TGIGFLFGKSDLLSAMP--PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEM 350 (458)
Q Consensus 274 p-~g~G~l~~~~~~~~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~ 350 (458)
. ..+|.++.++++.+.+. ++.. +..-..++...++..++|+.+.+.+ +.++.+
T Consensus 298 G~~Pigavv~~~~i~~~~~~~~~~~---------------------~~T~~gnp~~~Aaa~a~L~~i~~~~---l~~~~~ 353 (442)
T TIGR03372 298 GVMPIGATIATEAVFSVLFDNPFLH---------------------TTTFGGNPLACAAALATINELLEKN---LPAQAA 353 (442)
T ss_pred CcccceEEEecHHHHHhhhccCccc---------------------cCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHH
Confidence 3 24788888888766552 1111 1112346667777778888887643 555666
Q ss_pred HHHHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 351 ELAKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 351 ~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
++.++|.+.|+++ +.. .... ...+.++.+.+... ....+.+.+.++ ||.+..... ..+
T Consensus 354 ~~G~~l~~~L~~l~~~~~~~--i~~v----RG~Gl~~giel~~~~~~~~i~~~l~~~-Gvl~~~~~~----------~~~ 416 (442)
T TIGR03372 354 IKGDFLLDGFQQLAAEYPDL--IIEA----RGKGLLMAIEFRDNEIGYAFAKELFQQ-NILVAGTLN----------NAK 416 (442)
T ss_pred HHHHHHHHHHHHHHHhCCCc--eEEE----ecceEEEEEEeCChHHHHHHHHHHHHC-CcEEeecCC----------CCC
Confidence 6677776666543 211 1111 12366888877532 345788888888 999853210 146
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.+|+.++...|.+|+|++++++++++
T Consensus 417 ~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 417 SIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred EEEEECCcccCHHHHHHHHHHHHHhC
Confidence 89999999999999999999998764
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-18 Score=165.63 Aligned_cols=339 Identities=14% Similarity=0.130 Sum_probs=214.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC--CCcEEE-eC
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD--SGEIVF-TK 136 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~--~~~v~~-t~ 136 (458)
++--|+|.. ..|...+.+.+++.+.+....... .... ..+...++-+.|++.+..+. .+.++| ++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~--~~~~----~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~ 110 (425)
T PRK09264 37 DGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITH--GLDM----HTTAKREFLETFEETILKPRGLDYKVQFTGP 110 (425)
T ss_pred CCCEeeecccchhhccCCCCCHHHHHHHHHHHHhccccc--cccc----CcHHHHHHHHHHHHhhcCCcCCCceEEEeCC
Confidence 344566642 345678899999999887521111 1100 12333455566666543221 125666 48
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH----Hc--CC---eEEEEeCCCCC---CCCHHHHHHh
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ----KT--GA---NLKFLNLNDDE---SPDLDKLKEM 204 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~----~~--g~---~~~~v~~~~~~---~~d~~~l~~~ 204 (458)
||++|++.+++..+. ...+.+|+....+||+.......+.. +. +. .+..+|..... .-|++.+++.
T Consensus 111 sGseA~e~AlklAr~--~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~ 188 (425)
T PRK09264 111 TGTNAVEAALKLARK--VTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKL 188 (425)
T ss_pred CHHHHHHHHHHHHHH--hcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHH
Confidence 999999999987642 44567899999999987654443311 11 11 23445443110 1267778888
Q ss_pred hcC------CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CC---cc-cCCCCCCCCcEEEeccc
Q 012718 205 LSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VP---HM-VVDVQGLDADFLVASSH 269 (458)
Q Consensus 205 l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g---~~-~~~~~~~~~d~~~~s~~ 269 (458)
+.+ ++.+|+++.+....|.+.+ +++|.++|++||+++|+|++|. +| .. ..+.....+|+++ ++
T Consensus 189 l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t--~~ 266 (425)
T PRK09264 189 LEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVT--LS 266 (425)
T ss_pred HHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEE--ec
Confidence 742 4689999999998887664 8999999999999999999996 32 11 1222345689775 57
Q ss_pred CCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHH-HHHHHhCHHHHH
Q 012718 270 KMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAI-DYLSTIGMQKIH 346 (458)
Q Consensus 270 K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al-~~~~~~g~~~~~ 346 (458)
|.+|+.| +|++++++++ ..+.+...+ ...+.++...++..+++ +.+.+ +.+.
T Consensus 267 K~l~~~G~pigav~~~~~i-~~~~~~~~~---------------------~T~~gnp~~~aaa~a~l~~~~~~---~~l~ 321 (425)
T PRK09264 267 KSISGYGLPMALVLIKPEL-DVWKPGEHN---------------------GTFRGNNLAFVTATAALEEYWSD---DAFE 321 (425)
T ss_pred cccCCCccceEEEEEchhh-hccCCCccC---------------------CCCCCCHHHHHHHHHHHHHHHhh---hHHH
Confidence 9777755 7999998875 332211110 01124444555555666 33332 4567
Q ss_pred HHHHHHHHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhc
Q 012718 347 AYEMELAKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~ 421 (458)
++++++.+++.+.|+++ +.+ + ... ...+.++++.+++. ....+.+.+.++ ||.+.+....
T Consensus 322 ~~~~~~g~~l~~~l~~l~~~~~~~-~-~~v----rg~Gl~~~i~l~~~~~~~~l~~~~~~~-Gv~~~~~~~~-------- 386 (425)
T PRK09264 322 KEVKAKGELVRERLEEIAAKYPGL-G-AEV----RGRGMMQGIDFGDGELAGKIAAEAFEN-GLIIETSGPE-------- 386 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc-e-ecc----eecccEEEEEecChHHHHHHHHHHHHC-CCEEeccCCC--------
Confidence 77777777777776543 222 1 111 12356778888642 345788888888 9998653211
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
...||+++++.+|++||++++++|+++++++.+
T Consensus 387 --~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~ 419 (425)
T PRK09264 387 --DEVVKLLPPLTIDEEELEEGLDILEEAVAEVLA 419 (425)
T ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999989999999999999999987644
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-20 Score=172.49 Aligned_cols=331 Identities=18% Similarity=0.177 Sum_probs=202.9
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCC-cchhhhHHHHHH-HHHHHHHHHHcCCCCCC-c-EEEeCChhHHHHHHHHHcCCCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRG-IHFLSAKATDEY-ELARKKVAAFINASDSG-E-IVFTKNATEAINLVAYSWGLSN 153 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~la~~~g~~~~~-~-v~~t~g~t~a~~~~~~~l~~~~ 153 (458)
.+++.+.+++...+...+..-+.+ .++.|....+.+ +-++++++++||+++.+ . -+-..||+.|+..++.++
T Consensus 31 ~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aL---- 106 (399)
T PF00464_consen 31 YMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMAL---- 106 (399)
T ss_dssp ---HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHH----
T ss_pred ccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHH----
Confidence 466777777766554422211112 223333444444 44889999999998653 2 244579999999999999
Q ss_pred CCCCCEEEEcCCCCccchH-HHHH-H----HHHcCCeEEEEeCC-CCCCCCHHHHHHhhcC-CceEEEEecccCcCcccc
Q 012718 154 LKSGDEVILTVAEHHSAIV-PWQL-V----AQKTGANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNMLASIL 225 (458)
Q Consensus 154 ~~~g~~vl~~~~~~~s~~~-~~~~-~----a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~ 225 (458)
++|||+|+..+..+.++.. .... . +.....+++.++++ +++.+|.+.+++.+.+ ++++|++.... .-..+
T Consensus 107 l~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~~~~ 184 (399)
T PF00464_consen 107 LKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASS--YPRPI 184 (399)
T ss_dssp T-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SS--TSS--
T ss_pred HhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchh--ccCcc
Confidence 8999999988876654321 1110 0 01225678888988 5589999999998876 88999987654 33457
Q ss_pred cHHHHHHHHHhcCcEEEEeccccCC-----cccCCCCCCCCcEEEecccC-CCCCCceeEEEEe--------------cc
Q 012718 226 PIEEIVHWSHDVGAKVLVDACQSVP-----HMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGK--------------SD 285 (458)
Q Consensus 226 ~l~~i~~l~~~~~~~vivD~a~~~g-----~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~--------------~~ 285 (458)
|++++.++|++.|+++++|.+|-.| ..|-.+. . +|++++|.|| +.||.| |+++.+ ++
T Consensus 185 d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~-~-ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~ 261 (399)
T PF00464_consen 185 DFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFP-Y-ADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEIDEE 261 (399)
T ss_dssp -HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCC-T-SSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EEEHH
T ss_pred CHHHHHHHHHhcCcEEEecccccccceehheecCccc-c-ceEEEeeccccccccCc-eEEEEcCCccccCCcccccHHH
Confidence 7999999999999999999999843 3333343 2 8999999999 667875 888888 23
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+.+++...... ...|.+....+++++.++.........++.+++.++++.|.+.|.+. |
T Consensus 262 l~~~I~~avfP--------------------~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G 320 (399)
T PF00464_consen 262 LAEKIDSAVFP--------------------GLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER-G 320 (399)
T ss_dssp HHHHHHHHHTT--------------------TT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHhccccCC--------------------CcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-C
Confidence 33333221111 11367788888999999988766557899999999999999999998 9
Q ss_pred EEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC----CCCHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF----YNTKED 439 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~----~~t~~d 439 (458)
+++...... ..++++.+. +.+..++.+.|.+. ||.+.....+. ...-..+..|||+... ...++|
T Consensus 321 ~~v~~ggTd-----~H~vlvd~~~~~~~g~~a~~~Le~~-gI~vnkn~iP~---d~~~~~~sGlRlGT~~lT~rG~~e~d 391 (399)
T PF00464_consen 321 FKVVTGGTD-----NHQVLVDLRSFGIDGKEAEKALEEA-GIIVNKNTIPG---DRSPFVPSGLRLGTPALTRRGMKEED 391 (399)
T ss_dssp -EEGGGS-S-----SSEEEEEGGGGTS-HHHHHHHHHHT-TEE-EEE--TT---TSTTTT-SEEEEESHHHHHTT--HHH
T ss_pred cEEEECCCC-----CCeEEEEecccccchHHHHHHHHhc-CeeecccccCC---CCCCCCCCEEEECCHHHHhCCCCHHH
Confidence 999864321 447788875 46778888888887 99885321111 0011125789998653 236778
Q ss_pred HHHHHHHH
Q 012718 440 VDEFIHAL 447 (458)
Q Consensus 440 i~~l~~~l 447 (458)
+.++.+.|
T Consensus 392 m~~iA~~I 399 (399)
T PF00464_consen 392 MKEIAELI 399 (399)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 87776654
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=156.80 Aligned_cols=340 Identities=19% Similarity=0.222 Sum_probs=234.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhccC-C-CCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEe-CChhHHHHHHHHHcCC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSN-V-HRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFT-KNATEAINLVAYSWGL 151 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t-~g~t~a~~~~~~~l~~ 151 (458)
++...|+++++...+-+..++.. . -....+++....+...++++.+.++++.+.++.|.|. +|+|..+.++...+
T Consensus 12 GPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nL-- 89 (365)
T COG1932 12 GPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNL-- 89 (365)
T ss_pred CcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhh--
Confidence 44456777777777776665431 1 0124556667889999999999999999999899776 58888999998887
Q ss_pred CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC--CCC---CCCCHHHHHHhhcCCceEEEEecccCcCccccc
Q 012718 152 SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--NDD---ESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226 (458)
Q Consensus 152 ~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~--~~~---~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~ 226 (458)
+.++..-.+....|... + .+-++..+..+..... ..+ ...+++..+ +.++...|.+++..+.+|..++
T Consensus 90 --l~~~~~~yv~~g~Ws~~--a-~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~ 162 (365)
T COG1932 90 --LGKRGTDYVDTGAWSEF--A-IKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVEVP 162 (365)
T ss_pred --hcccCceeEeeeehhHh--H-HHHHHHhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccceEcc
Confidence 33332202323333322 2 2334555532222221 112 122433332 4445666889999999999888
Q ss_pred H-HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCc-cccCcceEeee
Q 012718 227 I-EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF-LGGGEMISDVF 304 (458)
Q Consensus 227 l-~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~-~~g~~~~~~~~ 304 (458)
- ..+. .+.++++|.+..+...++|+.+ .|++.++.+|-+||.|++++++|+++++++... ..
T Consensus 163 ~~p~~~-----~~~~~v~D~SS~ilsr~iDvsk--~dviyagaQKnlGpaGltvvIvr~~~l~r~~~~~~P--------- 226 (365)
T COG1932 163 ELPDIG-----SDGLLVADASSAILSRPIDVSK--YDVIYAGAQKNLGPAGLTVVIVRPDLLERAESYTLP--------- 226 (365)
T ss_pred CCCCCC-----CCceEEEecccHHhcCCCChhH--cceEEEehhhccCccceEEEEEcHHHHhcccccCCc---------
Confidence 2 2221 1278999999999999999887 799999999999999999999999999888654 11
Q ss_pred cCCCCCCCC-CCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccE
Q 012718 305 LDHSTFADP-PSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAAL 382 (458)
Q Consensus 305 ~~~~~~~~~-~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 382 (458)
....|... ...-...||+...+..+...++|+... |++.+.++.++.++.|++.+.+.+-++-...+ . .++...
T Consensus 227 -~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~-~--~RS~mn 302 (365)
T COG1932 227 -SIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAK-A--NRSRMN 302 (365)
T ss_pred -hHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccch-h--hcccee
Confidence 00111111 122235789999999999999999876 69999999999999999999988444433222 1 344458
Q ss_pred EEEEeCCCC-hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 383 CSFNVENIH-PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 383 v~~~~~~~~-~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
|+|.+.+.+ ...+++.+.++ |+..-.|. ...+.+|+|+..-...++++.|++.++++.++.
T Consensus 303 V~f~~~~~~ld~~fv~eae~~-gl~~lkGh----------r~vgGmRasiynA~~~e~veaL~~fm~~f~~~~ 364 (365)
T COG1932 303 VTFTLVDAELDKGFVAEAEAA-GLIYLKGH----------RSVGGLRASIYNAVPLEDVEALTDFMDWFEETY 364 (365)
T ss_pred EEEEcCcHHHHHHHHHHHHHc-CCceeccc----------cCCCceeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence 899987433 35677777777 77665553 114569999998889999999999999987753
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-18 Score=165.36 Aligned_cols=338 Identities=13% Similarity=0.145 Sum_probs=214.8
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|.-.+.+.+++.+.+.+... ..... . ..+...++-+.|++.......+.++|++||+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~-~~~~~-~----~~~~~~~la~~l~~~~p~~~~~~~~f~~sGs 111 (421)
T PRK09792 38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTH-TAYQI-V----PYESYVTLAEKINALAPVSGQAKTAFFTTGA 111 (421)
T ss_pred CCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccC-cccCc-c----CCHHHHHHHHHHHHhCCCCCCceEEEeCChH
Confidence 344566643 2356788899999998876421 11110 0 1222335556677766432223899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-----HcCC-----eEEEEeCCCC--CC---CCHHHHHHh
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KTGA-----NLKFLNLNDD--ES---PDLDKLKEM 204 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-----~~g~-----~~~~v~~~~~--~~---~d~~~l~~~ 204 (458)
+|++.+++..+ ....+.+|+....+||+.......+.. +.+. .+..+|...+ +. -+++.+++.
T Consensus 112 eA~e~AlklAr--~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~ 189 (421)
T PRK09792 112 EAVENAVKIAR--AHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERL 189 (421)
T ss_pred HHHHHHHHHHH--HhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHH
Confidence 99999998764 244556899999999987654443311 1111 1333443321 11 134677777
Q ss_pred hc-----CCceEEEEecccCcCcccc-c---HHHHHHHHHhcCcEEEEecccc-CCcc--cCCCC--CCCCcEEEecccC
Q 012718 205 LS-----RKTKLVVIHHISNMLASIL-P---IEEIVHWSHDVGAKVLVDACQS-VPHM--VVDVQ--GLDADFLVASSHK 270 (458)
Q Consensus 205 l~-----~~~~~v~~~~~~n~tG~~~-~---l~~i~~l~~~~~~~vivD~a~~-~g~~--~~~~~--~~~~d~~~~s~~K 270 (458)
+. +++++|+++.+++++|... | +++|.++|++||+++|+|+++. +|.. +.... ...+|+ .+++|
T Consensus 190 ~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi--~t~gK 267 (421)
T PRK09792 190 FKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDL--MTMAK 267 (421)
T ss_pred HHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcE--EEeeh
Confidence 75 3578999999999999876 5 8899999999999999999987 3221 11222 234785 56899
Q ss_pred CCC-CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 012718 271 MCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349 (458)
Q Consensus 271 ~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 349 (458)
.++ ...+|++++++++.+.+.....+ .....+....++..++++.+.+. ++.++.
T Consensus 268 ~l~~G~pigav~~~~~i~~~~~~~~~~---------------------~T~~gnpl~~aaa~a~l~~l~~~---~~~~~~ 323 (421)
T PRK09792 268 SLAGGMPLSGVVGNANIMDAPAPGGLG---------------------GTYAGNPLAVAAAHAVLNIIDKE---SLCERA 323 (421)
T ss_pred hhcCCCceEEEEEcHHHHhccCCCCcC---------------------CCCCCCHHHHHHHHHHHHHHHhh---hHHHHH
Confidence 655 33399999998887666532111 11235555666666778877653 455566
Q ss_pred HHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC--------ChHHHHHHHhhhcCeEeccCCCCChhhHhh
Q 012718 350 MELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI--------HPTDIATLLDQQYGVATRSGHHCAQPLHRY 420 (458)
Q Consensus 350 ~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~ 420 (458)
+++.+++.+.|+.+. .+...... ...|.++++.+++. ....+...+.++ ||.+.+...
T Consensus 324 ~~~g~~l~~~l~~l~~~~p~v~~v----rG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~~g~-------- 390 (421)
T PRK09792 324 NQLGQRLKNTLIDAKESVPAIAAV----RGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQ-GLLLLTCGA-------- 390 (421)
T ss_pred HHHHHHHHHHHHHHHHhCCCccee----cccceEEEEEecCCccCCcchHHHHHHHHHHHHC-CcEEeecCC--------
Confidence 666666666665430 11111111 23366888888632 135677778888 998853110
Q ss_pred cCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 421 LGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 421 ~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
..+.+|+.+++..+++||+++++.|.++++
T Consensus 391 --~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 391 --YGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred --CCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 147899999988999999999999999875
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-18 Score=167.96 Aligned_cols=328 Identities=9% Similarity=0.045 Sum_probs=201.6
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
|..++.+.+++.+.+.+... ..... . . .....++-+.+++..+.+..+.++|++||++|++.++.... .+.+
T Consensus 56 Gh~~~~i~~a~~~~~~~~~~-~~~~~--~--~-~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar--~~~~ 127 (425)
T PRK08088 56 GHLHPKVVAAVEAQLKKLSH-TCFQV--L--A-YEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIAR--AATK 127 (425)
T ss_pred CCCCHHHHHHHHHHHhhCCC-ccccc--c--C-CHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHH--HHhC
Confidence 45688899999988876421 11100 0 0 11223555666676664432388999999999998888653 2344
Q ss_pred CCEEEEcCCCCccchHHHHHHHHH-----cCC-----eEEE--EeCCCCCC-C--CHHHHHHhhc-----CCceEEEEec
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQK-----TGA-----NLKF--LNLNDDES-P--DLDKLKEMLS-----RKTKLVVIHH 216 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~-----~g~-----~~~~--v~~~~~~~-~--d~~~l~~~l~-----~~~~~v~~~~ 216 (458)
+.+|+...++||+.......+... .|. .+.. +|.+.++. . +++.+++.++ +++++|+++.
T Consensus 128 r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Ep 207 (425)
T PRK08088 128 RSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEP 207 (425)
T ss_pred CCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECc
Confidence 557788899999886554443110 010 0111 22211111 0 1456787775 3568888888
Q ss_pred ccCcCccccc----HHHHHHHHHhcCcEEEEeccccC-Cccc--CCCCCCCCcEEEecccCCCCCC-ceeEEEEeccccc
Q 012718 217 ISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV-PHMV--VDVQGLDADFLVASSHKMCGPT-GIGFLFGKSDLLS 288 (458)
Q Consensus 217 ~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~-g~~~--~~~~~~~~d~~~~s~~K~~gp~-g~G~l~~~~~~~~ 288 (458)
.....|.+.+ +++|.++|+++|+++|+|++|+. +... ..+...+.+.-+.|++|.+++. .+|+++.++++++
T Consensus 208 i~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~ 287 (425)
T PRK08088 208 VQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMD 287 (425)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHh
Confidence 8887787776 88999999999999999999882 2211 1111223333367899976642 2899999998877
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH----hcCC
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL----LSIP 364 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L----~~~~ 364 (458)
.+..... ....+.+.....++...++.... +++.++.++..+++.+.| ...|
T Consensus 288 ~~~~~~~---------------------~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~ 343 (425)
T PRK08088 288 AIAPGGL---------------------GGTYAGNPIACAAALAVLKVFEQ---ENLLQKANALGEKLKDGLLAIAEKHP 343 (425)
T ss_pred hcCCCCC---------------------CCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7653221 11123455555666666665543 233344444444444443 3444
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCC---------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVEN---------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
.+.... ..|.++++.+.. ....++.+.+.++ ||.+.++..+ .+.+|++++...
T Consensus 344 ~~~~v~-------g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~-Gv~~~~~~~~----------~~~iRl~~~~~~ 405 (425)
T PRK08088 344 EIGDVR-------GLGAMIAIELFEDGDHSKPNAKLTAQIVARARDK-GLILLSCGPY----------YNVLRILVPLTI 405 (425)
T ss_pred CeEEEe-------ccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhC-CCEEecCCCC----------CCEEEEECCCCc
Confidence 322211 126788888831 1145678888888 9887653211 468999999888
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 012718 436 TKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~ 454 (458)
+.+||++++++|.++++..
T Consensus 406 t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 406 EDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-17 Score=162.44 Aligned_cols=339 Identities=12% Similarity=0.131 Sum_probs=215.3
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+...... .. ...+...++-+.|++.+.....+.++|++||+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~-~~-----~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGs 111 (425)
T PRK07495 38 EGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCH-QV-----VPYENYVRLAERLNALVPGDFAKKTIFVTTGA 111 (425)
T ss_pred CCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCccc-Cc-----cCCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence 344566642 3466788899999998876422111 00 11233445667777777533213899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-----HcCC-----eEEEEeCCCC--CC---CCHHHHHHh
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KTGA-----NLKFLNLNDD--ES---PDLDKLKEM 204 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-----~~g~-----~~~~v~~~~~--~~---~d~~~l~~~ 204 (458)
+|++.+++..+ ....+.+|+....+||+.......+.. +.+. .+..+|.+.+ +. -+++.+++.
T Consensus 112 eA~e~AlklAr--~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~ 189 (425)
T PRK07495 112 EAVENAVKIAR--AATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKL 189 (425)
T ss_pred HHHHHHHHHHH--HhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHH
Confidence 99999998664 234567899999999987644333211 1111 2344444321 11 124455666
Q ss_pred hc-----CCceEEEEecccCcCcccc-c---HHHHHHHHHhcCcEEEEecccc-CCccc--CCCCC--CCCcEEEecccC
Q 012718 205 LS-----RKTKLVVIHHISNMLASIL-P---IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDVQG--LDADFLVASSHK 270 (458)
Q Consensus 205 l~-----~~~~~v~~~~~~n~tG~~~-~---l~~i~~l~~~~~~~vivD~a~~-~g~~~--~~~~~--~~~d~~~~s~~K 270 (458)
+. +++++|+++.+...+|... | +++|.++|++||+++|+|++|. +|... ..... ..+|+ .+++|
T Consensus 190 ~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi--~tlsK 267 (425)
T PRK07495 190 FKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADL--TTMAK 267 (425)
T ss_pred HHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCE--Eeehh
Confidence 53 3578888888887788654 3 8899999999999999999987 22221 11222 23565 55899
Q ss_pred CCC-CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 012718 271 MCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349 (458)
Q Consensus 271 ~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 349 (458)
.++ +..+|++++++++.+.+.+... ....+.+....++..++++++.+. .+.++.
T Consensus 268 ~l~~G~pigav~~~~~i~~~~~~~~~---------------------~~T~~~~pl~~aaa~a~l~~l~~~---~l~~~~ 323 (425)
T PRK07495 268 GLAGGFPLAAVTGRAEIMDAPGPGGL---------------------GGTYGGNPLGIAAAHAVLDVIEEE---DLCERA 323 (425)
T ss_pred hhcCCccceEEEEcHHHHhccCCCCc---------------------CCCCCCCHHHHHHHHHHHHHHHhc---hHHHHH
Confidence 554 3338999999888776653211 112245566667777888888663 455666
Q ss_pred HHHHHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCCCC--------hHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 350 MELAKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVENIH--------PTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 350 ~~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
+++.++|.+.|+++ |.+ ... ...|.++++.+.+.+ ...+.+.+.++ |+.+.....
T Consensus 324 ~~~g~~l~~~L~~l~~~~~~i---~~v----rG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~g~----- 390 (425)
T PRK07495 324 NQLGNRLKQRLASLRETVPEI---ADI----RGPGFMNAVEFNDADSGLPSAEFANRVRLKALEK-GLILLTCGV----- 390 (425)
T ss_pred HHHHHHHHHHHHHHHhhCCCe---eee----ecCceEEEEEEecCCCCCccHHHHHHHHHHHHHC-CeEEeecCC-----
Confidence 66667766666543 221 111 123667888774311 23567777777 998854210
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
..+.+|+.+++..+++|+|+++++|++++++++.
T Consensus 391 -----~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~~ 424 (425)
T PRK07495 391 -----HGNVIRFLAPITIQDDVFAEALDILEASILEASA 424 (425)
T ss_pred -----CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 0368999999999999999999999999987653
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=160.81 Aligned_cols=310 Identities=15% Similarity=0.202 Sum_probs=179.9
Q ss_pred Ccchhhh-HHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH----cCC----CCCC--CCCEEEEcCCCCcc
Q 012718 101 GIHFLSA-KATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS----WGL----SNLK--SGDEVILTVAEHHS 169 (458)
Q Consensus 101 ~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~----l~~----~~~~--~g~~vl~~~~~~~s 169 (458)
|...+.| +....+.++|+.+++++|++.+ +|++.+|++-.+..-..+ .+. ..|. +.-+.+++.|+|--
T Consensus 58 G~D~RNY~G~l~Gipe~r~l~a~llgv~~~-~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDR 136 (425)
T PF12897_consen 58 GTDCRNYPGGLDGIPEARELFAELLGVPPE-NVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDR 136 (425)
T ss_dssp TEBTTSS-S-SS--HHHHHHHHHHHTS-GG-GEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HH
T ss_pred CccccCCCCccCChHHHHHHHHHHhCCCHH-HEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchH
Confidence 4444445 5667888999999999999987 888877765444322211 110 1122 23478999999984
Q ss_pred chHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC--Cce-EEEEecccCcCcccccHHHHHHHH----HhcCcEEE
Q 012718 170 AIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTK-LVVIHHISNMLASILPIEEIVHWS----HDVGAKVL 242 (458)
Q Consensus 170 ~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~--~~~-~v~~~~~~n~tG~~~~l~~i~~l~----~~~~~~vi 242 (458)
+ ..+++..|++.+.||+.++|. |.+.+++.+.+ .++ +.+++..+||||..++-+.+.+++ ...+..|+
T Consensus 137 H----Fai~E~~Giemi~VpM~~dGP-DmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~ 211 (425)
T PF12897_consen 137 H----FAITEHFGIEMIPVPMTEDGP-DMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIF 211 (425)
T ss_dssp H----HHHHHHCT-EEEEEEEETTEE--HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEE
T ss_pred H----HHHHHhhCcEEEecCCCCCCC-CHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEE
Confidence 4 567888999999999999987 99999999854 444 557999999999999966666666 46899999
Q ss_pred EeccccCCcccC--------CC-------CCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 243 VDACQSVPHMVV--------DV-------QGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 243 vD~a~~~g~~~~--------~~-------~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
+|.+|++-++-- ++ ...+..++..|+|| .|.+.|++++..+++.++.+........
T Consensus 212 WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~t-------- 283 (425)
T PF12897_consen 212 WDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQT-------- 283 (425)
T ss_dssp EE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH---------
T ss_pred eecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCce--------
Confidence 999999766511 10 11135678889999 7888999999999987766553322100
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH-HHHHHHHHH-----------HHHHHHHHh-cCCCEEEeCCCC
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ-KIHAYEMEL-----------AKYLYENLL-SIPNIRIYGPKP 373 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~-~~~~~~~~l-----------~~~l~~~L~-~~~~~~~~~~~~ 373 (458)
.| ++-..++. -.+++.. .+ .+++|+++. .+.|.+.|. .....+|..|..
T Consensus 284 ------------Ig-pdKvNQLR---Hvrff~d--~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~G 345 (425)
T PF12897_consen 284 ------------IG-PDKVNQLR---HVRFFKD--AEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKG 345 (425)
T ss_dssp ------------S----HHHHHH---HHHHHHS--HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SB
T ss_pred ------------eC-ccHHHHHH---HHHHhcC--hhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCC
Confidence 11 11111111 1133433 23 344444443 344455565 444577877762
Q ss_pred CCcCccccEEEEEeCCCChHHHHHHHhhhcCeEecc-CCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRS-GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~-g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
|.|++|.+.+-....+++..++. ||.+.+ |..+++..... +..|||++++ .+.+|++..++.+.-+++
T Consensus 346 ------GYFIsld~~~G~AkrvV~lakeA-GV~LT~AGAtfPyg~DP~---D~nIRiAPS~-P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 346 ------GYFISLDVLDGTAKRVVELAKEA-GVALTPAGATFPYGKDPR---DSNIRIAPSY-PSLEELETAMDVFATCVK 414 (425)
T ss_dssp ------SS-EEEEESTT-HHHHHHHHHHT-TEE---TTTTSGGG--TT---S-EEEE--SS-S-HHHHHHHHHHHHHHHH
T ss_pred ------ceEEEEecCCChHHHHHHHHHHh-CceeCCCCCCCCCCCCCC---CCcEEecCCC-CCHHHHHHHHHHHHHHHH
Confidence 45999999877899999999998 999877 55443322211 6799999996 799999999999988876
Q ss_pred h
Q 012718 453 F 453 (458)
Q Consensus 453 ~ 453 (458)
.
T Consensus 415 l 415 (425)
T PF12897_consen 415 L 415 (425)
T ss_dssp H
T ss_pred H
Confidence 4
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-18 Score=170.34 Aligned_cols=339 Identities=12% Similarity=0.053 Sum_probs=210.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC--
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS-- 152 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~-- 152 (458)
..|...+.+.+++.+.+.+..... .... ...+...++.+.|.+.+.-.....+.|+++|++|+..++...+..
T Consensus 102 ~lGh~hp~v~~Av~~ql~~~~~~~-~~~~----~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~ 176 (504)
T PLN02760 102 ALGGSEPRLVAAATEQLNKLPFYH-SFWN----RTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNN 176 (504)
T ss_pred ccCCCCHHHHHHHHHHHhhcccee-cccc----cCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHH
Confidence 455678889999999987642211 0000 112334456677777653222137899999999999999876311
Q ss_pred --CCCCCCEEEEcCCCCccchHHHHHHHH------HcCC---eEEEEeCCCCC------C-------CCHHHHHHhhc--
Q 012718 153 --NLKSGDEVILTVAEHHSAIVPWQLVAQ------KTGA---NLKFLNLNDDE------S-------PDLDKLKEMLS-- 206 (458)
Q Consensus 153 --~~~~g~~vl~~~~~~~s~~~~~~~~a~------~~g~---~~~~v~~~~~~------~-------~d~~~l~~~l~-- 206 (458)
....+.+|+..+.+||+.......+.. ..+. .+..++.+... . ...+++++.+.
T Consensus 177 ~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 256 (504)
T PLN02760 177 ALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKE 256 (504)
T ss_pred hcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 011246899999999987543222111 0010 02223221100 0 01244666653
Q ss_pred --CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccc-cCCccc--C--CCCCCCCcEEEecccCCCCCC
Q 012718 207 --RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQ-SVPHMV--V--DVQGLDADFLVASSHKMCGPT 275 (458)
Q Consensus 207 --~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~-~~g~~~--~--~~~~~~~d~~~~s~~K~~gp~ 275 (458)
+++.+|+++.+....|.+.| +++|.++|++||+++|+|+++ ++|..- . +.....+|+++ +.|.+|..
T Consensus 257 ~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~lggG 334 (504)
T PLN02760 257 GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVS--LAKALSSA 334 (504)
T ss_pred CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEE--ecccccCC
Confidence 35789999999999999988 999999999999999999999 565431 1 12233489766 78955432
Q ss_pred --ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012718 276 --GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353 (458)
Q Consensus 276 --g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~ 353 (458)
.+|.+++++++.+.+.......+. ....++ .+.++...++..++|+.+.+. .+.++.+++.
T Consensus 335 ~~PigAv~~~~~i~d~~~~~~~~~~~-------------~~h~~T-~~gnPl~~Aaala~Le~i~~~---~l~~~~~~~g 397 (504)
T PLN02760 335 YMPIGAVLVSPEISDVIHSQSNKLGS-------------FAHGFT-YSGHPVSCAVALEALKIYKER---NIPEHVNKIA 397 (504)
T ss_pred ccccceEeecHHHHhhhhcccccccC-------------cccCCC-CCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence 478899998887665421100000 001111 234666777777788877663 5677788888
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-C-----------hHHHHHHHhhhcCeEeccCCCCChhhHhhc
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-H-----------PTDIATLLDQQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-----------~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~ 421 (458)
++|.+.|+++....+.... ...|.++.+.+.+. . ...+.+.+.++ ||.+.+.
T Consensus 398 ~~l~~~L~~l~~~~~v~~v----rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~----------- 461 (504)
T PLN02760 398 PRFQDGIKAFSGSPIIGEI----RGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKR-GMLVRVA----------- 461 (504)
T ss_pred HHHHHHHHHHhcCCCeeeE----EeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhC-CcEEEec-----------
Confidence 8888887665222111111 23355777766321 1 23567777888 9988642
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
...+|+++.+.+|++|||+++++++++++++.
T Consensus 462 --g~~lrl~Ppl~it~eeid~~~~~l~~al~~~~ 493 (504)
T PLN02760 462 --GDNIMMSPPLIITPEEVDELISIYGKALKATE 493 (504)
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 24799999988999999999999999987653
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-18 Score=157.86 Aligned_cols=314 Identities=16% Similarity=0.149 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC-C---CCEEEEcCCCCccchHHHHHHHHHcCCe
Q 012718 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK-S---GDEVILTVAEHHSAIVPWQLVAQKTGAN 184 (458)
Q Consensus 109 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~-~---g~~vl~~~~~~~s~~~~~~~~a~~~g~~ 184 (458)
......+....++.+++.+++..-..|.|+|+++.++...+.....+ + ...++++... ..+|.++++..+.+
T Consensus 118 ~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v----~~a~eK~a~yf~v~ 193 (491)
T KOG1383|consen 118 VRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNV----HAAFEKAARYFEVE 193 (491)
T ss_pred hHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHH----HHHHHHHHhhEEEE
Confidence 45666778899999999996645578889999977666655321112 1 1245555543 34889999999999
Q ss_pred EEEEeCC-CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh-cCcEEEEeccccCCcc--------cC
Q 012718 185 LKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD-VGAKVLVDACQSVPHM--------VV 254 (458)
Q Consensus 185 ~~~v~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~-~~~~vivD~a~~~g~~--------~~ 254 (458)
++.||++ .++.+|+..+.+.++++|.+++.+.++.|+|.+-|+++|.++..+ +++.+++|++-+.-.. ++
T Consensus 194 l~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~f 273 (491)
T KOG1383|consen 194 LREVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEF 273 (491)
T ss_pred EEeeeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCcccc
Confidence 9999999 568899999999999999999999999999999999999999999 9999999999873333 45
Q ss_pred CCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccc--cCcceEeeecCCCCCCCCCCccC-CCCCCHHHHHHH
Q 012718 255 DVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLG--GGEMISDVFLDHSTFADPPSRFE-AGTPAIGEAIGL 330 (458)
Q Consensus 255 ~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~--g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~l 330 (458)
++...+...+..+.|| .+.|.|.++++-+.+-...-+ ++. .|.. ..| ..++ .|+.+-.++++.
T Consensus 274 dFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q-~~~~~~w~G--------g~y----~s~TlngSR~g~~va~~ 340 (491)
T KOG1383|consen 274 DFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQ-LFFHTDWLG--------GIY----ASPTLNGSRPGSQVAAQ 340 (491)
T ss_pred ccCCCCceeEeeccceeeeeecCcEEEEEcccccccce-EEEeccccC--------ccc----cCcccccCCcccHHHHH
Confidence 5666678889999999 789999999888775322211 111 1100 001 1122 356666778888
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccC
Q 012718 331 GAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSG 410 (458)
Q Consensus 331 ~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g 410 (458)
++++-.+...|+.+..+.+.+.++.|++.+++++++.+++++. -.++.+.-...+-.++.+.|.+. |-.+..-
T Consensus 341 wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~------vs~~~~~s~~~~i~elsd~l~~~-GW~lnal 413 (491)
T KOG1383|consen 341 WAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPL------VSFILFGSNDVNIFELSDLLRKK-GWILNAL 413 (491)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCc------EEEEEccCCccchhhhhHHHHhc-CcCcccc
Confidence 8888888888999999999999999999999999999988752 34555544556778899999988 8877532
Q ss_pred CCCChhhHhhcCCCCeEEEeeCCCCCHHH-HHHHHHHHHHHHHhhhcc
Q 012718 411 HHCAQPLHRYLGVNASARASLHFYNTKED-VDEFIHALNETVSFFNVF 457 (458)
Q Consensus 411 ~~~~~~~~~~~g~~~~lRis~~~~~t~~d-i~~l~~~l~~~~~~~~~~ 457 (458)
.+ +..+-+++...+..++ .++++..|++++++++..
T Consensus 414 q~-----------P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~ 450 (491)
T KOG1383|consen 414 QF-----------PAAIHICVTRVHAREDVADRFVADIRKVVEELKSL 450 (491)
T ss_pred CC-----------CCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhC
Confidence 21 3344444443333344 688999999999887653
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-18 Score=165.66 Aligned_cols=345 Identities=12% Similarity=0.097 Sum_probs=215.5
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|.. ..|...+.+.+++.+.+.+.......+. ..+...++-+.|++++...- +.+.|++||+
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~------~~~~~~~la~~l~~~~p~~~-~~v~f~~sGs 116 (442)
T PRK13360 44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQM------GHPKAFELANRIAEIAPGGL-NHVFFTNSGS 116 (442)
T ss_pred CCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCc------CCHHHHHHHHHHHHhCCCCC-CEEEEeCCcH
Confidence 345667653 3467788999999999876422211110 12333456677777764322 3899999999
Q ss_pred HHHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHH----Hc--C---CeEEEEeCCCC-C--CC-------
Q 012718 140 EAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQ----KT--G---ANLKFLNLNDD-E--SP------- 196 (458)
Q Consensus 140 ~a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~----~~--g---~~~~~v~~~~~-~--~~------- 196 (458)
+|++.+++..+... ...+.+|+....+||+.......+.. +. + ..+..+|...+ . .+
T Consensus 117 eA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 196 (442)
T PRK13360 117 ESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEH 196 (442)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHH
Confidence 99999988653210 01246899999999987543322210 01 1 11233443211 0 00
Q ss_pred ---CHHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccc-cCCccc--C--CCCCCC
Q 012718 197 ---DLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQ-SVPHMV--V--DVQGLD 260 (458)
Q Consensus 197 ---d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~-~~g~~~--~--~~~~~~ 260 (458)
.++.+++.+. +++.+|+++.++...|.+.| +++|.++|++||+++|+|++| ++|..- . ......
T Consensus 197 ~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~ 276 (442)
T PRK13360 197 GAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVT 276 (442)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCC
Confidence 1456777774 45789999999999999998 999999999999999999999 554421 1 122345
Q ss_pred CcEEEecccCCCCCC--ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH
Q 012718 261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS 338 (458)
Q Consensus 261 ~d~~~~s~~K~~gp~--g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 338 (458)
+|+++ ++|.++.. .+|.+++++++.+.+..-...... + ...+ .-+.++...++..++|+.+.
T Consensus 277 PDivt--~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~----------~---~~~~-T~~g~pl~~aaa~a~L~~l~ 340 (442)
T PRK13360 277 PDLLT--CAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIE----------F---FHGY-TYSGHPLACAAALATLDLYE 340 (442)
T ss_pred Cceee--eeeccccCccceEEEEEcHHHHHHhhcCCccccc----------c---ccCC-CCCCCHHHHHHHHHHHHHHH
Confidence 88875 78955432 378888888876554321000000 0 0011 12356667777778888887
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC------CChHHHHHHHhhhcCeEeccCCC
Q 012718 339 TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN------IHPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 339 ~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
+. .+.++.+++.+++.+.|+++......... ...|.++.+.+.. ....++...+.++ ||.+...
T Consensus 341 ~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~v----rG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~-- 410 (442)
T PRK13360 341 RE---GLLTRAARLAPYWEDALHSLRDAPHVIDI----RNLGLVGAVELAPRDGKPGKRAYEVFLKCFEK-GLMIRYT-- 410 (442)
T ss_pred hC---CHHHHHHHHHHHHHHHHHHhhcCCCeeee----eccceEEEEEEecCCCCcchhHHHHHHHHHHC-CcEEEec--
Confidence 64 46677778888888888754222111111 1223344444421 1234677788888 9988642
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.+|++++..+|++|||+++++|+++++++
T Consensus 411 -----------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 411 -----------GDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred -----------CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999999999999998754
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-18 Score=165.81 Aligned_cols=347 Identities=12% Similarity=0.049 Sum_probs=217.5
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+........ . ..+...++-+.|++++..+. +.+.|+++|+
T Consensus 50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~---~---~~~~~~~la~~l~~~~p~~~-~~v~f~~sGs 122 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWS---Y---AHPPAIELAERLAALAPGDL-NRVFFTTGGS 122 (460)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccc---c---CCHHHHHHHHHHHHhCCCCc-CEEEEcCCcH
Confidence 344566642 355677899999999987642111000 0 12333456667777765333 3899999999
Q ss_pred HHHHHHHHHcCCCC-CC---CCCEEEEcCCCCccchHHHHHHHHH----cC-----CeEEEEeCCCCC-----CCC----
Q 012718 140 EAINLVAYSWGLSN-LK---SGDEVILTVAEHHSAIVPWQLVAQK----TG-----ANLKFLNLNDDE-----SPD---- 197 (458)
Q Consensus 140 ~a~~~~~~~l~~~~-~~---~g~~vl~~~~~~~s~~~~~~~~a~~----~g-----~~~~~v~~~~~~-----~~d---- 197 (458)
+|++.++...+... .. .+.+|+....+||+.......+... .+ ..+..+|..... .-+
T Consensus 123 eAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 202 (460)
T PRK06541 123 EAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAF 202 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHH
Confidence 99999998653210 01 2568999999999876544332110 00 112333322111 012
Q ss_pred ----HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccc-cCCcccC--CC--CCCC
Q 012718 198 ----LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQ-SVPHMVV--DV--QGLD 260 (458)
Q Consensus 198 ----~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~-~~g~~~~--~~--~~~~ 260 (458)
++.+++.+. +++.+|+++.++++.|.+.+ +++|.++|+++|+++|+|++| ++|.... .. ....
T Consensus 203 ~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~ 282 (460)
T PRK06541 203 GRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYV 282 (460)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCC
Confidence 356777764 35688889999999999988 999999999999999999999 5653311 11 2334
Q ss_pred CcEEEecccCCCC-CC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH
Q 012718 261 ADFLVASSHKMCG-PT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS 338 (458)
Q Consensus 261 ~d~~~~s~~K~~g-p~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 338 (458)
+|+++ ++|.+| +. .+|.+++++++.+.+..... ... ... ....++...++..++++.+.
T Consensus 283 PDivt--~gK~l~~G~~pigav~~~~~i~~~~~~~~~-~~~---------------~~~-T~~gnp~~~aaala~l~~l~ 343 (460)
T PRK06541 283 PDIIT--CAKGITSGYSPLGAMIASDRLFEPFLDGPT-MFL---------------HGY-TFGGHPVSAAVALANLDIFE 343 (460)
T ss_pred CCEEE--ecccccCCccceeEEEEcHHHHHHhhcCCC-ccc---------------cCC-CCCCCHHHHHHHHHHHHHHH
Confidence 89876 899655 32 48999999887665542110 000 000 12344555666666677665
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------Ch--------HHHHHHHhhhc
Q 012718 339 TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------HP--------TDIATLLDQQY 403 (458)
Q Consensus 339 ~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~--------~~~~~~l~~~~ 403 (458)
+ +.+.++.+++.++|.+.|+++....+.... ...|.++.+.+... +. ..+.+.+.++
T Consensus 344 ~---~~~~~~~~~~g~~l~~~L~~l~~~~~v~~v----rg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 415 (460)
T PRK06541 344 R---EGLLDHVRDNEPAFRATLEKLLDLPIVGDV----RGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEA- 415 (460)
T ss_pred h---ccHHHHHHHHHHHHHHHHHHhhcCCCeEEE----EecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhC-
Confidence 4 346688888888888888766221111111 12356777766311 00 2456777788
Q ss_pred CeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 404 GVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 404 gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
||.+.+.. .....+|+++.+.+|++|||+++++|+++++++..
T Consensus 416 Gi~~~~~~----------~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06541 416 GLYCRADD----------RGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAWA 458 (460)
T ss_pred CeEEEecC----------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99987521 01368999999999999999999999999987654
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-17 Score=161.42 Aligned_cols=339 Identities=12% Similarity=0.131 Sum_probs=214.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+.. ...... ...+...++-+.|++.++....+.++|+++|+
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~~~-----~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs 127 (443)
T PRK06058 54 DGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFT-HTCFMV-----TPYEGYVAVAEQLNRLTPGDHEKRSALFNSGA 127 (443)
T ss_pred CCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhcc-Cccccc-----cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence 344566653 255678899999999987632 111100 01233445667777776533223889999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-----HcCC-----eEEEEeCCCCCC------C-------
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KTGA-----NLKFLNLNDDES------P------- 196 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-----~~g~-----~~~~v~~~~~~~------~------- 196 (458)
+|++.+++..+ ....+++|+....+||+.......+.. ..+. .+..++...... .
T Consensus 128 eA~e~AlklAr--~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (443)
T PRK06058 128 EAVENAVKIAR--SYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAA 205 (443)
T ss_pred HHHHHHHHHHH--HhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHH
Confidence 99999998653 234567899999999988754443211 1111 122233211110 0
Q ss_pred -CHHHHHHhhc-CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCcEEE
Q 012718 197 -DLDKLKEMLS-RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADFLV 265 (458)
Q Consensus 197 -d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d~~~ 265 (458)
.++.+++.+. +++++|+++..+...|.+.| +++|.++|++||+++|.|+++. +|... + ......+|+++
T Consensus 206 ~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~ 285 (443)
T PRK06058 206 RAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLIT 285 (443)
T ss_pred HHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEE
Confidence 1233444443 46789999988888888876 8999999999999999999986 33211 1 12234589988
Q ss_pred ecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 266 ASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 266 ~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
. .|.+| +..+|++++++++.+.+.....+ .....+....++..++|+.+.+. .
T Consensus 286 ~--gK~l~~G~Pi~av~~~~~i~~~~~~~~~~---------------------~T~~gnpl~~aaa~a~L~~~~~~---~ 339 (443)
T PRK06058 286 T--AKGIAGGLPLSAVTGRAEIMDAPHPGGLG---------------------GTYGGNPVACAAALAAIETIEED---D 339 (443)
T ss_pred E--cccccCCCccEEEEEcHHHHhhccCCCCC---------------------CCCCCCHHHHHHHHHHHHHHHHc---C
Confidence 5 69555 33389999999887666532211 12246666677777778777653 5
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC-----C---hHHHHHHHhhhcCeEeccCCCCCh
Q 012718 345 IHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI-----H---PTDIATLLDQQYGVATRSGHHCAQ 415 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~-----~---~~~~~~~l~~~~gi~~~~g~~~~~ 415 (458)
+.++.+++.++|.+.|+++. ...+.... ...|.++.+.+... + ...+.+.+.++ ||.+.++..+
T Consensus 340 l~~~~~~~g~~l~~~L~~l~~~~~~i~~v----rg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~~~~~~~~-- 412 (443)
T PRK06058 340 LVARARQIEALMTDRLRALAAEDDRIGDV----RGRGAMIAIELVKPGTTEPDAELTKALAAAAHAA-GVIVLTCGTY-- 412 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEee----eccceEEEEEEecCCCCCCcHHHHHHHHHHHHHC-CeEEeccCCC--
Confidence 66777777777777776541 11111111 12366666666321 1 23466666777 9998764311
Q ss_pred hhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 416 PLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 416 ~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.+++|+.+++..|++||++++++|++++++
T Consensus 413 --------~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 413 --------GNVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred --------CCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 368999999889999999999999999875
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=153.52 Aligned_cols=286 Identities=17% Similarity=0.162 Sum_probs=205.2
Q ss_pred HHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCC-CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC
Q 012718 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD 193 (458)
Q Consensus 115 ~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~ 193 (458)
+++.++++--+..++ ++.+..|+.+.+.++++.. +.|| ++|+...|+|.-- .--|.-.+++|+.+|..++
T Consensus 73 ~ls~a~~~dkpLt~d-nic~GvGsDE~ID~iiR~~----c~PGkeKIl~cPPtysMY----~v~A~iNd~eVvkvpl~pd 143 (375)
T KOG0633|consen 73 RLSDALAQDKPLTSD-NICVGVGSDELIDLIIRCV----CDPGKEKILDCPPTYSMY----VVDAAINDAEVVKVPLNPD 143 (375)
T ss_pred hhhhhcccCCCCCcc-ceEEecCcHHHHHHHHhhe----ecCCccceeecCCcceeE----EEEeecCCceEEEecCCCC
Confidence 455666666555555 9999999999999999987 6787 8999999999732 2223446899999999999
Q ss_pred CCCCHHHHHHhhcC--CceEEEEecccCcCcccccHHHHHHHHHhc-CcEEEEecccc-CCcc--cCC-CCCCCCcEEEe
Q 012718 194 ESPDLDKLKEMLSR--KTKLVVIHHISNMLASILPIEEIVHWSHDV-GAKVLVDACQS-VPHM--VVD-VQGLDADFLVA 266 (458)
Q Consensus 194 ~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~-~~~vivD~a~~-~g~~--~~~-~~~~~~d~~~~ 266 (458)
+.++++.+.+.+.. .+++++++.|.||||.....++|.++.+-. |.++++|++|- +... ... +.+...-+++-
T Consensus 144 F~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlq 223 (375)
T KOG0633|consen 144 FSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQ 223 (375)
T ss_pred ccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehh
Confidence 99999999888765 579999999999999999999999998865 78999999986 1111 111 34445566777
Q ss_pred cccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH---hC
Q 012718 267 SSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST---IG 341 (458)
Q Consensus 267 s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~---~g 341 (458)
++||.||..| +|+-+.+..+.+.+......++ . .. .+-.+||+.+.. ..
T Consensus 224 TlSKsfGLAGiRvG~~~~~~~ia~iln~~KaPYN--------------------i--S~----~~s~~AL~Als~~n~kk 277 (375)
T KOG0633|consen 224 TLSKSFGLAGIRVGYGAFPLSIAEILNRAKAPYN--------------------I--SV----AGSVAALAALSDSNGKK 277 (375)
T ss_pred hhhhhcCcceeEeecccccHHHHHHHHhccCCcc--------------------c--cc----hhHHHHHHhcCcccchH
Confidence 9999999888 8999998877665554332111 1 11 222233333332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC---hHHHHHHHhhhcCeEeccCCCCChhhH
Q 012718 342 MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH---PTDIATLLDQQYGVATRSGHHCAQPLH 418 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~l~~~~gi~~~~g~~~~~~~~ 418 (458)
++..+..+.+-+.+|...|.++++..=+.-.. .++|+.+++.+-+ +..+...+....|+.++-..
T Consensus 278 me~~rdaiv~er~RL~keLt~v~~~~~~~gg~-----daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrg------- 345 (375)
T KOG0633|consen 278 MEDVRDAIVRERERLFKELTEVPFLNDYPGGS-----DANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRG------- 345 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccccCCCCcc-----cccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcC-------
Confidence 67788888888999999999887765222221 2678888887432 34555555555699887321
Q ss_pred hhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 419 RYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 419 ~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
...|..|++||+.+ |+|+-+-+++.++++
T Consensus 346 se~~c~G~lRitvG---t~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 346 SEEGCKGYLRITVG---TPEENTVLMKCLKQF 374 (375)
T ss_pred CccccceeEEEEcC---CcccchHHHHHHHhh
Confidence 02344899999999 778888888888765
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-19 Score=169.05 Aligned_cols=266 Identities=20% Similarity=0.250 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
...+.++++.+|+.+|++. ..++++|+|.++..++.++ +++||+|+++..+|-|++.++. ..|+.+++++
T Consensus 65 ~G~I~eAe~~aA~~fGAd~--t~flvnGsT~g~~a~i~a~----~~~gd~VLv~RN~HkSv~~ali----l~ga~Pvyi~ 134 (417)
T PF01276_consen 65 EGIIKEAEELAARAFGADK--TFFLVNGSTSGNQAMIMAL----CRPGDKVLVDRNCHKSVYNALI----LSGAIPVYIP 134 (417)
T ss_dssp BTHHHHHHHHHHHHHTESE--EEEESSHHHHHHHHHHHHH----TTTTCEEEEETT--HHHHHHHH----HHTEEEEEEE
T ss_pred ccHHHHHHHHHHHhcCCCe--EEEEecCchHHHHHHHHHh----cCCCCEEEEcCCcHHHHHHHHH----HcCCeEEEec
Confidence 3456788999999999984 6788899999999999998 7999999999999998865443 4599999988
Q ss_pred CCCC-----CCCCH-----HHHHHhhcCC-----ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccC----C
Q 012718 190 LNDD-----ESPDL-----DKLKEMLSRK-----TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV----P 250 (458)
Q Consensus 190 ~~~~-----~~~d~-----~~l~~~l~~~-----~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~----g 250 (458)
...+ +.+++ +.++++|++. .+++++++| +..|.+.++++|+++|+++++.|+||+||+. .
T Consensus 135 p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~P-TY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~ 213 (417)
T PF01276_consen 135 PEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSP-TYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFH 213 (417)
T ss_dssp EEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCS
T ss_pred CCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCC-CCCeEEECHHHHHHHhcccCCEEEEEccccccccCC
Confidence 7522 24566 8888888752 245888888 6699999999999999999999999999982 2
Q ss_pred cccCCCCCCCCc-------EEEecccC-CCCCCceeEEEEeccc-c--ccCCCccccCcceEeeecCCCCCCCCCCccCC
Q 012718 251 HMVVDVQGLDAD-------FLVASSHK-MCGPTGIGFLFGKSDL-L--SAMPPFLGGGEMISDVFLDHSTFADPPSRFEA 319 (458)
Q Consensus 251 ~~~~~~~~~~~d-------~~~~s~~K-~~gp~g~G~l~~~~~~-~--~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 319 (458)
.+|.+....++| +++-|.|| +-+....++|.++.+. + +++...+ ..+++
T Consensus 214 ~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l--------------------~~~~T 273 (417)
T PF01276_consen 214 PLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEAL--------------------SMHQT 273 (417)
T ss_dssp GGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHH--------------------HHHS-
T ss_pred CCccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHH--------------------HHHcC
Confidence 233445567789 99999999 5557779999999875 2 2222211 13556
Q ss_pred CCCCHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHH---hcCCCEEEeCCCCCCcC------------------
Q 012718 320 GTPAIGEAIGLGAAIDYL-STIGMQKIHAYEMELAKYLYENL---LSIPNIRIYGPKPSEHV------------------ 377 (458)
Q Consensus 320 gt~~~~~~~~l~~al~~~-~~~g~~~~~~~~~~l~~~l~~~L---~~~~~~~~~~~~~~~~~------------------ 377 (458)
.+|++..++++..+.+++ ...| .++.++..++++.+++.+ ++++++++..+..-...
T Consensus 274 TSPSY~lmASlD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~ 352 (417)
T PF01276_consen 274 TSPSYPLMASLDVARAQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLA 352 (417)
T ss_dssp SS--HHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--
T ss_pred CChHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhcc
Confidence 789999999999999998 4443 455566667777788887 67778887766521100
Q ss_pred ----cccc-EEEEEeC-----------CCChHHHHHHHhhhcCeEec
Q 012718 378 ----QRAA-LCSFNVE-----------NIHPTDIATLLDQQYGVATR 408 (458)
Q Consensus 378 ----~~~~-~v~~~~~-----------~~~~~~~~~~l~~~~gi~~~ 408 (458)
.--| =+.+.+| |++...+.++|+++ ||.+.
T Consensus 353 ~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~-~I~~E 398 (417)
T PF01276_consen 353 DDYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREH-GIQVE 398 (417)
T ss_dssp TTSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHT-TEE-S
T ss_pred cCccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHc-CCEEE
Confidence 0112 2344443 35677889999998 99885
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-17 Score=159.16 Aligned_cols=340 Identities=14% Similarity=0.142 Sum_probs=214.7
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+...... .. -..+...++.+.|++.+.....+.|.|++||+
T Consensus 40 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~--~~----~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGs 113 (445)
T PRK08593 40 DGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTP--AY----MYHEPLVRLAKKLCELAPGDFEKRVTFGLSGS 113 (445)
T ss_pred CCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccc--cc----cCCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence 344566642 3456789999999998876422111 00 01233445667788877543213899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-----Hc--C---CeEEEEeCCCCC-----CCC-------
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KT--G---ANLKFLNLNDDE-----SPD------- 197 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-----~~--g---~~~~~v~~~~~~-----~~d------- 197 (458)
+|++.+++..+ ....+.+|+..+.+||+.......+.. +. + ..+..+|..... ..+
T Consensus 114 eA~e~AiklAr--~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (445)
T PRK08593 114 DANDGIIKFAR--AYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEY 191 (445)
T ss_pred HHHHHHHHHHH--HhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHH
Confidence 99999998653 234556899999999987654433321 00 0 113344433211 111
Q ss_pred HHHHHHhhc-----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCcE
Q 012718 198 LDKLKEMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADF 263 (458)
Q Consensus 198 ~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d~ 263 (458)
++.+++.+. +++.+|+++.+.+..|.+.| +++|.++|++||+++|+|+++. +|... . ......+|+
T Consensus 192 ~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi 271 (445)
T PRK08593 192 LAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDL 271 (445)
T ss_pred HHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCE
Confidence 133444342 46799999999999999877 9999999999999999999984 43321 1 112334787
Q ss_pred EEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 264 LVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 264 ~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
++ ++|.+| ...+|++++++++.+.+..... .+ ....+....++..++++.+.+.
T Consensus 272 ~t--~gK~l~~G~p~gav~~~~~i~~~~~~~~~--------------------~~-T~~~~pl~~aaa~a~l~~l~~~-- 326 (445)
T PRK08593 272 MS--FGKSLAGGMPMSAIVGRKEIMESLEAPAH--------------------LF-TTGANPVSCAAALATIDMIEDE-- 326 (445)
T ss_pred ee--ecccccCCcccEEEEEcHHHHhhhccCCC--------------------CC-CCCCCHHHHHHHHHHHHHHHhc--
Confidence 75 789554 3338999999888766542111 11 2235555667777788877663
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC---------ChHHHHHHHhhhcCeEeccCCC
Q 012718 343 QKIHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI---------HPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
.+.++.+++.++|.+.|+++. ...+.... ...|.++.+.+... ....+...+.++ ||.+.+..
T Consensus 327 -~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v----rG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~~~- 399 (445)
T PRK08593 327 -SLLQRSAEKGEYARKRFDQWVSKYNFVGDV----RGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEH-GVVIIAVA- 399 (445)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhcCCcEEEE----eccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHC-CeEEeccC-
Confidence 456666777777777665430 11111111 12255655555311 124577778888 99885421
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.+|++++..+|++||++++++++++++++.+
T Consensus 400 -----------~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 400 -----------GNVLRFQPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred -----------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 358999999999999999999999999987654
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-17 Score=160.63 Aligned_cols=337 Identities=12% Similarity=0.065 Sum_probs=211.5
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|.. ..|...+.+.+++.+.+.+.... +... ..+...++-+.|++..+.. +.+.|++||+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~---~~~~----~~~~~~~la~~L~~~~~~~--~~v~f~~sGs 108 (408)
T PRK04612 38 QGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHT---SNVF----YSAPPLKLAEELVTASRFA--EKVFLCNSGT 108 (408)
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccc---cccc----CCHHHHHHHHHHHhhCCCC--CEEEEcCchH
Confidence 344566642 34567888999999988753211 1111 1122334556666665322 3899999999
Q ss_pred HHHHHHHHHcCCCC--CC---CCCEEEEcCCCCccchHHHHHHHHH----cCCe-----EEEEeCCCCCCCCHHHHHHhh
Q 012718 140 EAINLVAYSWGLSN--LK---SGDEVILTVAEHHSAIVPWQLVAQK----TGAN-----LKFLNLNDDESPDLDKLKEML 205 (458)
Q Consensus 140 ~a~~~~~~~l~~~~--~~---~g~~vl~~~~~~~s~~~~~~~~a~~----~g~~-----~~~v~~~~~~~~d~~~l~~~l 205 (458)
+|++.+++..+... .. .+.+|+....+||+........... .+.. +..++. .|++.+++.+
T Consensus 109 eA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~ 183 (408)
T PRK04612 109 EANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-----NDVEALEAAM 183 (408)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-----CCHHHHHHhh
Confidence 99999998753210 01 2347999999999876544332110 0110 111221 2788898888
Q ss_pred cC-CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--CCCCCCCCcEEEecccCCCCC-Cc
Q 012718 206 SR-KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDVQGLDADFLVASSHKMCGP-TG 276 (458)
Q Consensus 206 ~~-~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~~~~~~~~d~~~~s~~K~~gp-~g 276 (458)
.. ++.+|+++..+...|.+.+ +++|.++|+++|+++|+|++|. +|... +.....+.+..+.+++|.+|+ ..
T Consensus 184 ~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~p 263 (408)
T PRK04612 184 AGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGGFP 263 (408)
T ss_pred CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCCCc
Confidence 64 4566666665554444443 8899999999999999999987 32221 111122344455568996653 23
Q ss_pred eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012718 277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYL 356 (458)
Q Consensus 277 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l 356 (458)
+|+++.++++.+.+.....+ . ..+.+.....+..++|+.+.+ +.+.++.+++.+++
T Consensus 264 iga~~~~~~~~~~~~~~~~~--------------------~-t~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l 319 (408)
T PRK04612 264 IGAMLAGPKVAETMQFGAHG--------------------T-TFGGNPLAAAVARVALRKLAS---PQIAANVARQSAAL 319 (408)
T ss_pred eEEEEECHHHHhhhcCCCcC--------------------C-CCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHH
Confidence 89999888776655432111 1 113456667777777877765 35677777778888
Q ss_pred HHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC
Q 012718 357 YENLLSIP-NIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH 432 (458)
Q Consensus 357 ~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~ 432 (458)
.+.|+++. .+.+.... ...+.++.+.+.. ....++.+.+.++ |+.+.+.. .+.+|+.++
T Consensus 320 ~~~l~~l~~~~~~i~~v----rg~Gl~~~i~~~~~~~~~a~~i~~~l~~~-Gvlv~~~g------------~~~lRl~Pp 382 (408)
T PRK04612 320 RAGLEALNAEFGVFAQV----RGRGLMLGAVLAPAHAGQAGAILDLAAEH-GLLLLQAG------------PDVLRFVPA 382 (408)
T ss_pred HHHHHHHHhhCCCeeee----eccceEEEEEecCchhhHHHHHHHHHHHC-CeEEeeCC------------CCEEEEcCC
Confidence 77776541 11112121 2336677776642 1245678888888 99986422 478999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 433 FYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 433 ~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
+..+.+||+++++.++++++++.++
T Consensus 383 l~it~eeid~~l~~l~~~l~~~~~~ 407 (408)
T PRK04612 383 LNLTDAELADGLARLRLALADYVAQ 407 (408)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhc
Confidence 9899999999999999999887654
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-17 Score=162.54 Aligned_cols=339 Identities=16% Similarity=0.219 Sum_probs=209.7
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|.-.+.+.+++.+.+++.... +.... ..+...++-+.|+++++....+.+.|++||+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~---~~~~~---~~~~~~~la~~L~~~~p~~~~~~v~f~~sGs 125 (451)
T PRK06918 52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHT---GFNVM---MYEPYIELAEKLAALAPGSFDKKVLFLNSGA 125 (451)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCc---ccccc---ccHHHHHHHHHHHHhCCCCCCCEEEEcCCcH
Confidence 344566642 34567888999999988763211 11000 1233445667777877543223899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-----c--C---CeEEEEeCCC-----CCCCC-------
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----T--G---ANLKFLNLND-----DESPD------- 197 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~--g---~~~~~v~~~~-----~~~~d------- 197 (458)
+|++.+++..+ ....+.+|+....+||+.......+... . + -.+..+|... .+..+
T Consensus 126 eA~e~AlklAr--~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (451)
T PRK06918 126 EAVENAVKIAR--KYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFM 203 (451)
T ss_pred HHHHHHHHHHH--HHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHH
Confidence 99999998764 2455678999999999877554433211 0 0 0123333221 11100
Q ss_pred HHHHHHhh----c-CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc--cCCCCCCC--CcE
Q 012718 198 LDKLKEML----S-RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--VVDVQGLD--ADF 263 (458)
Q Consensus 198 ~~~l~~~l----~-~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~--~~~~~~~~--~d~ 263 (458)
++.+++.+ . +++.+|+++.++...|.++| +++|.++|++||+++|+|+++. ++.. .+....++ +|+
T Consensus 204 ~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi 283 (451)
T PRK06918 204 IEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDL 283 (451)
T ss_pred HHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCE
Confidence 12233333 1 36788999988888888776 8899999999999999999987 3221 12222233 785
Q ss_pred EEecccCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 264 LVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 264 ~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
+ +++|.+++ ..+|+++.++++++.+.+...+ .....+.....+..++++.+.+.+
T Consensus 284 ~--t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~---------------------~T~~g~~l~~aaa~a~l~~i~~~~- 339 (451)
T PRK06918 284 I--TVSKSLGAGVPISGVIGRKEIMDESAPGELG---------------------GTYAGSPLGCAAALAVLDIIEKEN- 339 (451)
T ss_pred E--eeehhhcCCCccEEEEEcHHHHhccCCCCcC---------------------cCCCcCHHHHHHHHHHHHHHHHCC-
Confidence 4 68996663 2289999998887766532211 122355556666667778776533
Q ss_pred HHHHHHHHHHHHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeC-C----C----ChHHHHHHHhhhcCeEecc
Q 012718 343 QKIHAYEMELAKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVE-N----I----HPTDIATLLDQQYGVATRS 409 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~-~----~----~~~~~~~~l~~~~gi~~~~ 409 (458)
+.++.+++.+++.+.|+++ +.+.... ..|.++.+.+. + . ....+.+.+.++ ||.+.+
T Consensus 340 --~~~~~~~~g~~l~~~l~~l~~~~~~~~~vr-------g~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-Gvlv~~ 409 (451)
T PRK06918 340 --LNDRAIELGKVVMNRFEEMKNKYNCIGDVR-------GLGAMCAFELVQDRKTKEPDKTLTANICKEANKR-GLLLLS 409 (451)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhCCCceeec-------cceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHC-CeEEee
Confidence 4445555556665555443 2211111 22555555442 1 1 134566666777 999987
Q ss_pred CCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 410 GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 410 g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+..+ .+++|++++...++++|++++++|+++++++.+
T Consensus 410 ~~~~----------~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~ 446 (451)
T PRK06918 410 AGTY----------GNVIRVLMPLVITDEQLEEGLTIIEESLQACYE 446 (451)
T ss_pred cCCC----------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 5321 368999998778999999999999999987643
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=155.61 Aligned_cols=328 Identities=19% Similarity=0.218 Sum_probs=218.8
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|.|+.. .|-.++.+.+++.+.+++ |.... . ..+..-++-+.+.+.++.- +.|-|+++||
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~-------G~~fg-~-Pte~Ei~~Aell~~~~p~~--e~vrfvnSGT 119 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLER-------GLSFG-A-PTELEVELAELLIERVPSI--EKVRFVNSGT 119 (432)
T ss_pred CCCEeeehhccCcccccCCCCHHHHHHHHHHHHh-------cCCCC-C-CCHHHHHHHHHHHHhcCcc--cEEEEecchh
Confidence 4445666542 234578899999999876 22221 1 2333444557777887653 3899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCC-----------------eEEEEeCCCCCCCCHHHHH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-----------------NLKFLNLNDDESPDLDKLK 202 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~-----------------~~~~v~~~~~~~~d~~~l~ 202 (458)
+|...+++..+ ....+|+|+..+.+||+....+.--+.. |. .+..+|.+ |++.++
T Consensus 120 EAtmsAiRlAR--a~TgR~kIikF~G~YHG~~D~~lv~ags-g~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~ 191 (432)
T COG0001 120 EATMSAIRLAR--AYTGRDKIIKFEGCYHGHSDSLLVKAGS-GAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALE 191 (432)
T ss_pred HHHHHHHHHHH--HhhCCCeEEEEcCCCCCCccHHHhhcCc-CcccCCCCCCCCCChhhhccEEEecCC-----CHHHHH
Confidence 99999998764 4678899999999999887655442211 11 23334433 999999
Q ss_pred HhhcC---CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccCCcccC----CCCCCCCcEEEecccC-
Q 012718 203 EMLSR---KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHMVV----DVQGLDADFLVASSHK- 270 (458)
Q Consensus 203 ~~l~~---~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~~~----~~~~~~~d~~~~s~~K- 270 (458)
+++.+ ++.+|+++.+....|.+.| ++.|.++|+++|+++|.|++...-..++ +.....+|+.+ +.|
T Consensus 192 ~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDltt--lGKi 269 (432)
T COG0001 192 EAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTT--LGKI 269 (432)
T ss_pred HHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchhh--hhhh
Confidence 98875 6799999999999999998 8899999999999999999976333221 23334588877 889
Q ss_pred CCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCC--CCHHHHHHHHHHHHHHHHh-C-HHHHH
Q 012718 271 MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGT--PAIGEAIGLGAAIDYLSTI-G-MQKIH 346 (458)
Q Consensus 271 ~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~~l~~al~~~~~~-g-~~~~~ 346 (458)
+.|+-.+|.+.++.++.+.+.+.- ..|+.|| .|+..+++..++++.+.+. + ++++.
T Consensus 270 IGGGlP~ga~gGr~eiM~~~~p~g--------------------~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~ 329 (432)
T COG0001 270 IGGGLPIGAFGGRAEIMEQLAPLG--------------------PVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLD 329 (432)
T ss_pred hcCCcceeeeccHHHHHhhhCCCC--------------------CccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 455555999999999888666432 1233444 4566667777777777762 2 34444
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC--C---------C---hHHHHHHHhhhcCeEeccCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN--I---------H---PTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~---------~---~~~~~~~l~~~~gi~~~~g~~ 412 (458)
+.-.+|.+-|.+.+.+. ++.+..... +.++.+-+.. + + -..+...|.++ ||++.|..+
T Consensus 330 ~~~~~L~~gl~~~~~~~-g~~~~v~~~------gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps~~ 401 (432)
T COG0001 330 ALGERLAEGLRAAAERH-GIPLTVNRV------GSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQF 401 (432)
T ss_pred HHHHHHHHHHHHHHHHh-CCCeEEeee------cceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCccc
Confidence 44444444444444444 444433321 4444444432 1 1 22455577778 999987642
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+..=+|.. ++++|||+.+++++++++++..
T Consensus 402 ------------ea~flS~a--hte~di~~~~~a~~~~~~~~~~ 431 (432)
T COG0001 402 ------------EAGFLSTA--HTEEDIDRTLEAADEAFKELAG 431 (432)
T ss_pred ------------cceeeecc--cCHHHHHHHHHHHHHHHHHhhc
Confidence 22335555 7999999999999999987753
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-17 Score=157.11 Aligned_cols=306 Identities=14% Similarity=0.152 Sum_probs=204.3
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.|...+.+.+++.+.+.+.... +... ..+...++.+.++++.+.+ .++|++|||+|++.+++..+. ..
T Consensus 38 lGh~~p~v~~ai~~ql~~~~~~---~~~~----~~~~~~~la~~l~~~~~~~---~v~~~~SGseA~e~Alklar~--~~ 105 (364)
T PRK04013 38 LGHNHPEWVEEMSEQLEKLVVA---GPMF----EHEEKEEMLEELSKWVNYE---YVYMGNSGTEAVEAALKFARL--YT 105 (364)
T ss_pred CCCCCHHHHHHHHHHHHhcCCc---cCCc----CCHHHHHHHHHHHhhcCCC---EEEEeCchHHHHHHHHHHHHH--Hh
Confidence 4566788889999988764221 1111 1234456778888887653 899999999999999998742 33
Q ss_pred CCCEEEEcCCCCccchHHHHHHHH----HcCCe-----EEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccccc
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQ----KTGAN-----LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~----~~g~~-----~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~ 226 (458)
.+++|++.+.+||+.......+.. +.+.. +..+|.+ |++.+++.+.+++++|++++.+...|...+
T Consensus 106 gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~i~~~~aAvivEpi~g~gG~~~~ 180 (364)
T PRK04013 106 GRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFN-----DVEAAKEAITKETAAVIFEPIQGEGGIVPA 180 (364)
T ss_pred CCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCC-----CHHHHHHHhcCCcEEEEEcCCcCCCCCcCC
Confidence 448999999999987654333210 01111 2223222 788899999888999999999888887765
Q ss_pred ----HHHHHHHHHhcCcEEEEecccc---CCcc-cCCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccC
Q 012718 227 ----IEEIVHWSHDVGAKVLVDACQS---VPHM-VVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGG 297 (458)
Q Consensus 227 ----l~~i~~l~~~~~~~vivD~a~~---~g~~-~~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~ 297 (458)
+++|.++|++||+++|+|+++. .|.. ........+|+++ +.|.+| ...+|.++.+++.. +...+
T Consensus 181 ~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~--~gK~lggG~P~~a~~~~~~~~----~~~~~- 253 (364)
T PRK04013 181 KEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVT--MGKGIGNGVPVSLTLTNFDVE----RGKHG- 253 (364)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEE--ecccccCCceeEEEEeccccc----CCCcC-
Confidence 8999999999999999999987 2221 1112234589888 589443 33478888776641 11110
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcC
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHV 377 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~ 377 (458)
.+...++...++..+.|+.+.+.++ .++.++. +. .+.. +. .... .
T Consensus 254 --------------------~T~~gnp~~~aaa~a~l~~i~~~~l---~~~~~~~---l~-~l~~-~~---v~~v----R 298 (364)
T PRK04013 254 --------------------STFGGNPLACKAVAVTLRILRRERL---VEKAGEK---FI-EIKG-ER---VVTT----R 298 (364)
T ss_pred --------------------CCCCcCHHHHHHHHHHHHHHHhccH---HHHHHHH---HH-Hhcc-Cc---ceee----e
Confidence 1224666677777788888877543 3333332 22 2221 11 1222 2
Q ss_pred ccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 378 QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 378 ~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+|-++.+.+.. ....+.+.+.++ |+.+.+.. .+.+|+.+++..+++|+++++++|+++++++
T Consensus 299 G~Gl~~gve~~~-~~~~i~~~~~~~-Gll~~~~g------------~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 299 GRGLMIGIVLKK-PVGKYVEELQNR-GYLVHTAG------------QRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred eCcEEEEEEeCC-cHHHHHHHHHhC-CcEEeeCC------------CCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence 346678888754 246788888888 99886421 4689999999999999999999999999764
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-17 Score=162.48 Aligned_cols=345 Identities=12% Similarity=0.095 Sum_probs=214.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|.. ..|...+.+.+++.+.+.+........ . ..+...++-+.|++++.... +.|.|++||+
T Consensus 47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~---~---~~~~~~~la~~L~~~~p~~~-~~v~f~~sGs 119 (445)
T PRK09221 47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQ---M---GHPLAFELAERLAELAPGGL-DHVFFTNSGS 119 (445)
T ss_pred CCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccc---c---CCHHHHHHHHHHHHhCCCCC-CEEEEeCCcH
Confidence 344566642 345678889999999887642221100 0 12333456677777774322 3899999999
Q ss_pred HHHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHH----Hc--C---CeEEEEeCCC-C----CC------
Q 012718 140 EAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQ----KT--G---ANLKFLNLND-D----ES------ 195 (458)
Q Consensus 140 ~a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~----~~--g---~~~~~v~~~~-~----~~------ 195 (458)
+|++.+++..+... ...+.+|+....+||+.......+.. +. + ..+..+|... . ..
T Consensus 120 eAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
T PRK09221 120 ESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEH 199 (445)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHH
Confidence 99999998653210 01245899999999987543322210 00 1 1123333221 0 00
Q ss_pred --CCHHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc--cC--CCCCCC
Q 012718 196 --PDLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQGLD 260 (458)
Q Consensus 196 --~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~--~~--~~~~~~ 260 (458)
..++++++.+. +++.+|+++.+....|.+.| +++|.++|+++|+++|+|+++. +|.. .+ +.....
T Consensus 200 ~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~ 279 (445)
T PRK09221 200 GAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVT 279 (445)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCC
Confidence 01346666664 46789999999999999998 9999999999999999999984 5432 11 222334
Q ss_pred CcEEEecccCCCC-C-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH
Q 012718 261 ADFLVASSHKMCG-P-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS 338 (458)
Q Consensus 261 ~d~~~~s~~K~~g-p-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 338 (458)
+|+++ ++|.++ + ..+|.+++++++.+.+..-...... + ...+.. +.++...++..++|+.+.
T Consensus 280 PDi~~--~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~----------~---~~~~T~-~~~pl~~aaa~a~L~~i~ 343 (445)
T PRK09221 280 PDIIT--FAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIE----------F---FHGYTY-SAHPVACAAGLATLDIYR 343 (445)
T ss_pred CCEEE--eccccccCcccceeeEEcHHHHHhhccCcccccc----------c---ccccCC-CcCHHHHHHHHHHHHHHH
Confidence 78776 778443 2 2378888888876655320000000 0 001111 245555666667788776
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC------CChHHHHHHHhhhcCeEeccCCC
Q 012718 339 TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN------IHPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 339 ~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
+. .+.++.+++.++|.+.|+++......... ...+.+..+.+.. .....+.+.+.++ ||.++.+
T Consensus 344 ~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~v----rg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~~-- 413 (445)
T PRK09221 344 EE---DLFERAAELAPYFEDAVHSLKGLPHVIDI----RNIGLVAGIELAPRPGAPGARGYEAFMKCFEK-GLLVRYT-- 413 (445)
T ss_pred hc---cHHHHHHHHHHHHHHHHHhhccCCCEEEE----ecCceEEEEEEecccccccchHHHHHHHHHHC-CeEEeec--
Confidence 63 45778888899998888766322111111 1224455555532 1134678888888 9998642
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.+|+++++.+|++||+++++.|+++++++
T Consensus 414 -----------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 414 -----------GDTIALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred -----------CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999999999999999765
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=163.74 Aligned_cols=348 Identities=11% Similarity=0.034 Sum_probs=217.2
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|..+ .|.-.+.+.+++.+.+.+..... ..... ..+...++-+.|++.+..+. +.++|++||+
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~--~~~~~---~~~~~~~lae~L~~~~p~~~-~~v~f~~sGS 117 (459)
T PRK05965 44 SGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYAT--GYFHF---GSEPAIRLAAKLAERAPGSL-NHVYFTLGGS 117 (459)
T ss_pred CCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcc--ccccc---CCHHHHHHHHHHHhhCCCCc-CEEEEeCChh
Confidence 4456676532 34567889999999887632111 11000 12333456677777764332 3899999999
Q ss_pred HHHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHH----H--cCC---eEEEEeCCCCC----CCC-----
Q 012718 140 EAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQ----K--TGA---NLKFLNLNDDE----SPD----- 197 (458)
Q Consensus 140 ~a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~----~--~g~---~~~~v~~~~~~----~~d----- 197 (458)
+|++.+++..+... ...+.+|+....+||+.......+.. + .|. .+..++..... ..|
T Consensus 118 EAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (459)
T PRK05965 118 DAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAII 197 (459)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHH
Confidence 99999998753210 02246899999999987643222211 1 110 12333322100 012
Q ss_pred ---HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCC
Q 012718 198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDA 261 (458)
Q Consensus 198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~ 261 (458)
++.+++.+. +++.+|+++.++...|.+.| +++|.++|++||+++|.|+++. +|..- + +.....+
T Consensus 198 ~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~P 277 (459)
T PRK05965 198 AASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVP 277 (459)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCC
Confidence 256777774 46789999999998898876 8899999999999999999987 33221 1 1223459
Q ss_pred cEEEecccCC-CCCC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKM-CGPT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 262 d~~~~s~~K~-~gp~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
|+++ +.|. .|+. .+|.+++++++.+.+.+-...... + ....+.+.++...++..++|+.+.+
T Consensus 278 Div~--~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~----~----------~h~~T~~gnpl~~Aaa~a~L~~l~~ 341 (459)
T PRK05965 278 DLMT--VAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAP----V----------GHGYTYSAHPVSAAVGLEVLRLYHE 341 (459)
T ss_pred CeEE--echhhccCCcceeEEEEcHHHHHHHhcccccccc----c----------cccCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999 6894 4442 589999999887655321000000 0 0001223566666777777887766
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-C------C-----hHHHHHHHhhhcCeEe
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-I------H-----PTDIATLLDQQYGVAT 407 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~------~-----~~~~~~~l~~~~gi~~ 407 (458)
+.+.++.+++.++|.+.|+++....+.... ...|.++.+.+.. . + ...+.+.+.++ |+.+
T Consensus 342 ---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~v----rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gll~ 413 (459)
T PRK05965 342 ---GGLLANGQKAGPRFAAGLDALRAHPLVGDV----RGRGLLGALELVADKATKTPFDAALDPADRIFDRAYAN-GLVF 413 (459)
T ss_pred ---ccHHHHHHHHHHHHHHHHHhhccCCCEEEE----eecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhC-CeEE
Confidence 356667778888888888765211111111 2335677776631 1 0 23566777778 9998
Q ss_pred ccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 408 RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 408 ~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.+.. .+.+|+.+++..|++||+++++.++++++++.
T Consensus 414 ~~~g------------~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~ 449 (459)
T PRK05965 414 RAFG------------DGVLGFAPALCCTEGEFDLIFERTRKTLDDVL 449 (459)
T ss_pred EecC------------CcEEEEECCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 6421 46799999998999999999999999998763
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.4e-17 Score=158.12 Aligned_cols=339 Identities=11% Similarity=0.079 Sum_probs=214.4
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+..... .. . ..+...++-+.|+++..... +.+.|++||+
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~-~~--~----~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs 122 (451)
T PRK06062 51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVA-PA--H----ANDARSEAARLIAERAPGDL-SKVFFTNGGA 122 (451)
T ss_pred CCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcC-Cc--c----CCHHHHHHHHHHHHhCCCCC-CEEEEcCChH
Confidence 344566643 245677889999999887642211 11 1 12333456677777765322 3899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHc---C-----CeEEEEeCCCCCC------CC-------H
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT---G-----ANLKFLNLNDDES------PD-------L 198 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~---g-----~~~~~v~~~~~~~------~d-------~ 198 (458)
+|++.+++..+ ....+.+|+....+||+.......+.... . ..+..++...... -| +
T Consensus 123 EAve~AlklAr--~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 200 (451)
T PRK06062 123 DANEHAVRMAR--LHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERAL 200 (451)
T ss_pred HHHHHHHHHHH--HhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHH
Confidence 99999998764 24456789999999998865444332100 0 0112222211110 12 5
Q ss_pred HHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEE
Q 012718 199 DKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLV 265 (458)
Q Consensus 199 ~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~ 265 (458)
+.+++.++ +++.+|+++.++...|.+.| +++|.++|+++|+++|+|+++. +|..- .+.....+|+++
T Consensus 201 ~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t 280 (451)
T PRK06062 201 AHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLIT 280 (451)
T ss_pred HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeee
Confidence 67777774 35789999999999999988 9999999999999999999987 33221 112234589776
Q ss_pred ecccCCCC-CC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 266 ASSHKMCG-PT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 266 ~s~~K~~g-p~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
+.|.+| +. .+|.+++++++.+.+....... .. ..+.++...++..++|+.+.+.+
T Consensus 281 --~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~------------------~~-T~~gnpl~~Aaa~a~L~~l~~~~-- 337 (451)
T PRK06062 281 --FAKGVNSGYVPLGGVAISEAIAATFADRPYPG------------------GL-TYSGHPLACAAAVATINAMEEEG-- 337 (451)
T ss_pred --echhhhcCCcCcEEEEEcHHHHHHhccCCCCC------------------CC-CCCCCHHHHHHHHHHHHHHHhcC--
Confidence 789554 32 4888888888766554210000 01 12345667777778888876643
Q ss_pred HHHHHHHHHH-HHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCC--C-------------ChHHHHHHHhhhcCeE
Q 012718 344 KIHAYEMELA-KYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVEN--I-------------HPTDIATLLDQQYGVA 406 (458)
Q Consensus 344 ~~~~~~~~l~-~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~--~-------------~~~~~~~~l~~~~gi~ 406 (458)
+.++.+++. ++|.+.|+++. .+.+.... ...|.++.+.+.. . ....+.+.+.++ ||.
T Consensus 338 -l~~~~~~~G~~~l~~~L~~l~~~~~~v~~v----rG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gvl 411 (451)
T PRK06062 338 -IVENAARIGAEVLGPGLRELAERHPSVGEV----RGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKER-GLL 411 (451)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCcEEeE----eccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHC-CcE
Confidence 555555565 45555554430 11111111 1225566666531 0 123677788888 998
Q ss_pred eccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 407 TRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 407 ~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+.+. .+.+|+++++.+|++|||++++++++++++++.
T Consensus 412 ~~~~-------------~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~~ 448 (451)
T PRK06062 412 PFVN-------------GNRIHVVPPCTVTEDEVREGLAILDAALAVADA 448 (451)
T ss_pred Eeec-------------CCEEEEECCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 7531 357999999889999999999999999987654
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-17 Score=163.77 Aligned_cols=345 Identities=11% Similarity=0.075 Sum_probs=216.0
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|.. ..|...+.+.+++.+.+.+......... ...+...++-+.|++.+..+- +.+.|++||+
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~-----~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs 119 (460)
T PRK06105 46 AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSH-----KSHGPVIDLAEKLVAMAPVPM-SKVFFTNSGS 119 (460)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccc-----cCCHHHHHHHHHHHHhCCCCC-CEEEEeCCcH
Confidence 444566643 3456788999999999876321100000 012333456677778775432 3899999999
Q ss_pred HHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHH------HcC---CeEEEEeCCCCCC-----------
Q 012718 140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQ------KTG---ANLKFLNLNDDES----------- 195 (458)
Q Consensus 140 ~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~------~~g---~~~~~v~~~~~~~----------- 195 (458)
+|++.+++..+.. ....+.+|+....+||+.......+.. ..| ..+..++......
T Consensus 120 eAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 199 (460)
T PRK06105 120 EANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAF 199 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHH
Confidence 9999999874211 112346899999999977543222111 001 0122232221000
Q ss_pred --CCHHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccc-cCCccc----CCCCCCC
Q 012718 196 --PDLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQ-SVPHMV----VDVQGLD 260 (458)
Q Consensus 196 --~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~-~~g~~~----~~~~~~~ 260 (458)
..++++++.+. +++.+|+++.++...|.+.+ ++++.++|++||+++|+|+++ ++|..- .+.....
T Consensus 200 ~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~ 279 (460)
T PRK06105 200 ATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIK 279 (460)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCC
Confidence 01355676663 35789999999998998887 999999999999999999998 455431 1222345
Q ss_pred CcEEEecccCCCCCC--ceeEEEEeccccccCCCccc--cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 261 ADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLG--GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 261 ~d~~~~s~~K~~gp~--g~G~l~~~~~~~~~l~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
+|+++ ++|.+|.. .+|.+++++++.+.+.+... +... ... ....|+...++..++|+.
T Consensus 280 PDi~~--~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~---------------h~~-T~~gnpl~~aaa~a~L~~ 341 (460)
T PRK06105 280 PDILV--MSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFG---------------HGF-TASGHPVAAAVALENLAI 341 (460)
T ss_pred CCeee--eecccccCcccceEEEEcHHHHHHHhcccccCcccc---------------cCC-CCCCCHHHHHHHHHHHHH
Confidence 89886 78955432 48889999887665542110 0000 000 123555666666677887
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------C-----hHHHHHHHhhhcC
Q 012718 337 LSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------H-----PTDIATLLDQQYG 404 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~-----~~~~~~~l~~~~g 404 (458)
+.+ +.+.++.+++.++|.+.|+++....+.... ...|.++.+.+... + ...+...+.++ |
T Consensus 342 i~~---~~l~~~v~~~g~~l~~~L~~l~~~~~v~~v----rG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~-G 413 (460)
T PRK06105 342 IEE---RDLVGNAAERGARLQARLRALADHPLVGEV----RGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEH-G 413 (460)
T ss_pred HHh---ccHHHHHHHHHHHHHHHHHHhhcCCCeEEE----EecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHC-C
Confidence 776 356677788888888887665222211111 23355767766311 0 13567777777 9
Q ss_pred eEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 405 VATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 405 i~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.+.+. .+.+|+++.+..|++|||++++.++++++++.
T Consensus 414 vl~~~~-------------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (460)
T PRK06105 414 VISRAM-------------GDTLAFCPPLIITAAQVDEMVDRFGRALDDVA 451 (460)
T ss_pred eEEEec-------------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 998642 24899999988899999999999999998764
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=170.28 Aligned_cols=296 Identities=11% Similarity=0.098 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
.+.++++..|+.+|++. ..++++|+|.++..++.+. +++||+|++...+|-|++.++ ...|+++++++..
T Consensus 206 ~I~eAq~~aA~~fgA~~--t~FlvNGST~gn~a~i~a~----~~~gd~Vlv~RN~HKSv~~al----~L~ga~Pvyl~P~ 275 (755)
T PRK15029 206 AFGESEKYAARVFGADR--SWSVVVGTSGSNRTIMQAC----MTDNDVVVVDRNCHKSIEQGL----ILTGAKPVYMVPS 275 (755)
T ss_pred HHHHHHHHHHHHhCCCc--EEEEeCChhHHHHHHHHHh----cCCCCEEEeecccHHHHHHHH----HHcCCeEEEeccc
Confidence 56688999999999983 7888999999999999887 799999999999999886544 3459999999754
Q ss_pred CC-----CCCC-----HHHHHHhhcCC--ce--------EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccC--
Q 012718 192 DD-----ESPD-----LDKLKEMLSRK--TK--------LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV-- 249 (458)
Q Consensus 192 ~~-----~~~d-----~~~l~~~l~~~--~~--------~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~-- 249 (458)
-+ +.++ ++.+++++... ++ ++++++| +..|.+.+++.|+++||++|+.++||+||+.
T Consensus 276 ~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~ 354 (755)
T PRK15029 276 RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_pred ccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHhcCCeEEEECcccccc
Confidence 22 3344 88998888542 23 8888888 6699999999999999999999999999983
Q ss_pred ---CcccC--CC-----CCCCCc-EEEecccCCC-CCCceeEEEEecc--ccc--cCCCccccCcceEeeecCCCCCCCC
Q 012718 250 ---PHMVV--DV-----QGLDAD-FLVASSHKMC-GPTGIGFLFGKSD--LLS--AMPPFLGGGEMISDVFLDHSTFADP 313 (458)
Q Consensus 250 ---g~~~~--~~-----~~~~~d-~~~~s~~K~~-gp~g~G~l~~~~~--~~~--~l~~~~~g~~~~~~~~~~~~~~~~~ 313 (458)
+.+|. .+ ...|+| +++-|.||.+ +....++|.++.+ .++ ++...+
T Consensus 355 ~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l------------------- 415 (755)
T PRK15029 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY------------------- 415 (755)
T ss_pred ccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHH-------------------
Confidence 11221 12 125788 8888999965 4677899988654 222 122111
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHhcCCC---------------------------
Q 012718 314 PSRFEAGTPAIGEAIGLGAAIDYLST-IGMQKIHAYEMELAKYLYENLLSIPN--------------------------- 365 (458)
Q Consensus 314 ~~~~~~gt~~~~~~~~l~~al~~~~~-~g~~~~~~~~~~l~~~l~~~L~~~~~--------------------------- 365 (458)
..+++.+|++..++++..+..++.. .| ....++..+.+..+++.+.++++
T Consensus 416 -~~~qSTSPSY~LmASLD~ar~~m~~~~G-~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 493 (755)
T PRK15029 416 -MMHATTSPLYAICASNDVAVSMMDGNSG-LSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTY 493 (755)
T ss_pred -HHHcCCCcHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccc
Confidence 2345778999999999999998876 44 44555666777777777766543
Q ss_pred ---------------EEEeCCCCCCc---C------cccc-EEEEEeC--CCChH---------HHHHHHhhhcCeEecc
Q 012718 366 ---------------IRIYGPKPSEH---V------QRAA-LCSFNVE--NIHPT---------DIATLLDQQYGVATRS 409 (458)
Q Consensus 366 ---------------~~~~~~~~~~~---~------~~~~-~v~~~~~--~~~~~---------~~~~~l~~~~gi~~~~ 409 (458)
+.+..+....+ . .--+ =+++.++ +.+.. .+.+.|.+. ||.+.-
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~-gI~~E~ 572 (755)
T PRK15029 494 DFADAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH-GIVPTR 572 (755)
T ss_pred cccccchhhhccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHc-CCEEEe
Confidence 22222100000 0 0011 1334332 22333 788888555 998853
Q ss_pred CCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 410 GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 410 g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
.. ...+=+-+++.++.+++++++++|.++-+
T Consensus 573 ~~------------~~~vL~l~s~g~t~~~~~~L~~aL~~~~~ 603 (755)
T PRK15029 573 TT------------DFQIMFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_pred cC------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 22 44566666666999999999999998754
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-17 Score=160.33 Aligned_cols=350 Identities=11% Similarity=0.070 Sum_probs=214.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+...... .. ..+...++-+.|++.++.. +.+.|++||+
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~---~~----~~~~~~~lae~l~~~~~~~--~~v~f~~sGs 115 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPL---TQ----SHEPAIKLAEKLNEWLGGE--YVIFFSNSGS 115 (451)
T ss_pred CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcccc---cc----CCHHHHHHHHHHHHhCCCC--CEEEEeCCcH
Confidence 445566642 3456778999999998876422111 00 1223345667777877543 3899999999
Q ss_pred HHHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHHH----cC-----CeEEEEeCCCCCCC---------C
Q 012718 140 EAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQK----TG-----ANLKFLNLNDDESP---------D 197 (458)
Q Consensus 140 ~a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~~----~g-----~~~~~v~~~~~~~~---------d 197 (458)
+|++.+++..+... ...+.+|+....+||+........... .+ ..+..++....... |
T Consensus 116 eA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (451)
T PRK07678 116 EANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYD 195 (451)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHH
Confidence 99999998763210 012468999999999876544332110 00 11233332211110 1
Q ss_pred ---HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCC
Q 012718 198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA 261 (458)
Q Consensus 198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~ 261 (458)
++.+++.+. +++.+|+++.++...|.+.| ++++.++|++||+++|+|+++. +|..- .......+
T Consensus 196 ~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~P 275 (451)
T PRK07678 196 LECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKP 275 (451)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCC
Confidence 223555563 46799999999888898887 8999999999999999999984 54321 11123358
Q ss_pred cEEEecccCCCCCC--ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 262 d~~~~s~~K~~gp~--g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
|+++ +.|.+|.. .+|.+++++++.+.+.+.... .. + .-..+-+.++...++..++|+.+.+
T Consensus 276 Divt--~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~-~~----~----------~h~~T~~gnp~~~aaa~a~l~~l~~ 338 (451)
T PRK07678 276 DIIT--MAKGITSAYLPLSATAVKKEIYEAFKGKGEY-EH----F----------RHVNTFGGNPAACALALKNLEIMEN 338 (451)
T ss_pred CEEE--eecccccCCcceeEEEEcHHHHHHHhccCcc-cc----c----------ccCCCCCcCHHHHHHHHHHHHHHHh
Confidence 9987 68954432 489999999887655421100 00 0 0011224566677777778888766
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcC-CCEEEeCCCCCCcCccccEEEEEeCCC-------C---hHHHHHHHhhhcCeEec
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSI-PNIRIYGPKPSEHVQRAALCSFNVENI-------H---PTDIATLLDQQYGVATR 408 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~---~~~~~~~l~~~~gi~~~ 408 (458)
. .+.++.+++.++|.+.|++. ....+.... ...+.++.+.+... + ...+...+.++ ||.+.
T Consensus 339 ~---~~~~~~~~~g~~l~~~l~~~~~~~~~v~~v----rg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~-Gv~~~ 410 (451)
T PRK07678 339 E---NLIERSAQLGELLLEQLKEELGEHPLVGDI----RGKGLLVGIELVNDKETKEPADNDKVASVVAACKEK-GLIIG 410 (451)
T ss_pred C---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEE----EeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHC-CcEEe
Confidence 4 45566666666666666432 111111111 22356666666310 1 24677778888 99886
Q ss_pred cCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 409 SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 409 ~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.... . .+..+.+|+++++.+|++||+++++++++++++++
T Consensus 411 ~~g~~-v-----~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (451)
T PRK07678 411 KNGDT-V-----AGYNNVLTLSPPLVISSEEIAFIVGTLKTALERIK 451 (451)
T ss_pred ecCcc-c-----cCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 42100 0 01136899999998999999999999999998653
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-17 Score=159.06 Aligned_cols=339 Identities=12% Similarity=0.156 Sum_probs=215.8
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+..... .... ..+...++-+.|++.++...+ .+.|++||+
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~-~~~~-----~~~~~~~lae~L~~~~p~~~~-~v~f~~SGs 123 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSM-IGYT-----HSERAIRVAEKLAEISPIENP-KVLFGLSGS 123 (457)
T ss_pred CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccc-cCcc-----CCHHHHHHHHHHHhhCCCCcC-EEEEeCchH
Confidence 344566652 345677889999999887632111 1100 123334566777777754323 899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-----HcCC-----eEEEEeCCCCCC--------CCH---
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KTGA-----NLKFLNLNDDES--------PDL--- 198 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-----~~g~-----~~~~v~~~~~~~--------~d~--- 198 (458)
+|++.+++..+ ....+.+|+....+||+.......+.. +.+. .+..+|...... .|.
T Consensus 124 EA~e~AlklAr--~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 201 (457)
T PRK05639 124 DAVDMAIKVSK--FSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDEL 201 (457)
T ss_pred HHHHHHHHHHH--HhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHH
Confidence 99999998764 245567899999999987654443321 1111 234444332110 022
Q ss_pred -----HHHHHhh------cCCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCC
Q 012718 199 -----DKLKEML------SRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQG 258 (458)
Q Consensus 199 -----~~l~~~l------~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~ 258 (458)
+.+++.+ .+++.+|+++.++...|.+.| +++|.++|++||+++|+|+++. +|... .+...
T Consensus 202 ~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~g 281 (457)
T PRK05639 202 INRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFE 281 (457)
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcC
Confidence 2345443 246799999999998898776 8899999999999999999987 22111 11123
Q ss_pred CCCcEEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH
Q 012718 259 LDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 259 ~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
..+|+++ ++|. .|..++|++++++++.+..... . .+ ....++...++..++|+.+
T Consensus 282 v~PDiv~--~gK~l~gG~pi~av~~~~~i~~~~~~~-~--------------------~~-T~~g~p~~~aaa~a~l~~l 337 (457)
T PRK05639 282 VKPDLII--FGKGVASGMGLSGVIGRKELMDLTSGS-A--------------------LL-TPAANPVISAAAEATLEII 337 (457)
T ss_pred CCCCEEE--echhhcCCCcceeEEehHHHHhhcCCC-c--------------------cc-CCCcCHHHHHHHHHHHHHH
Confidence 4589998 7894 4455689999999886621100 0 01 1234555666666777777
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcC-CCEEEeCCCCCCcCccccEEEEEeCCC-------ChHHHHHHHhhhcCeEecc
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSI-PNIRIYGPKPSEHVQRAALCSFNVENI-------HPTDIATLLDQQYGVATRS 409 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~l~~~~gi~~~~ 409 (458)
.+. .+.++.+++.++|.+.|+++ ....+.... ...|.++.+.+... ....+.+.+.++ |+.+.+
T Consensus 338 ~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~V----rG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~ 409 (457)
T PRK05639 338 EEE---NLLKNALKVGEFIKKRLLEMKESFEVIGDV----RGKGLMIGVEIVKENGKPDPELTGKICWRAFEL-GLILPS 409 (457)
T ss_pred HHc---cHHHHHHHHHHHHHHHHHHHHHhCCCEEee----ccceeEEEEEEecCCCCCCHHHHHHHHHHHHhC-CeEEee
Confidence 663 45566666777777777653 112222222 23355666665321 134577778888 999864
Q ss_pred CCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 410 GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 410 g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
... ..+.+|+++.+..|++|+|+++++|+++++.+.
T Consensus 410 ~g~----------~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 410 YGM----------FGNVIRITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred cCC----------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 210 146899999999999999999999999988764
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-17 Score=149.88 Aligned_cols=326 Identities=14% Similarity=0.126 Sum_probs=220.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCcEEEe-CChhHHHHHHHHHcCCCCCC----CCCEEEEcCCCCccchHHHHHHHHHc
Q 012718 107 AKATDEYELARKKVAAFINASDSGEIVFT-KNATEAINLVAYSWGLSNLK----SGDEVILTVAEHHSAIVPWQLVAQKT 181 (458)
Q Consensus 107 ~~~~~~~~~~~~~la~~~g~~~~~~v~~t-~g~t~a~~~~~~~l~~~~~~----~g~~vl~~~~~~~s~~~~~~~~a~~~ 181 (458)
.+..+++.++++.|++..|.+ .|.+. +.|.++-..-+..++..+.. ..+.+++++..|.++ ...|...
T Consensus 105 qG~l~li~~Lq~~L~~ITG~D---avsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTN----PASAam~ 177 (496)
T COG1003 105 QGYLELIYELQEWLKEITGMD---AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTN----PASAAMA 177 (496)
T ss_pred HHHHHHHHHHHHHHHHhcCCc---eeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCC----hhhHhhc
Confidence 345677888999999999998 56555 34455544444444321222 346899999999988 3345677
Q ss_pred CCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccc-cHHHHHHHHHhcCcEEEEeccccCCcccC-CCCCC
Q 012718 182 GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL-PIEEIVHWSHDVGAKVLVDACQSVPHMVV-DVQGL 259 (458)
Q Consensus 182 g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~-~l~~i~~l~~~~~~~vivD~a~~~g~~~~-~~~~~ 259 (458)
|.+|+.|+.+++|.+|+++|++++.+++.++.+++|++ .|..- ++.+|+++.|++|..+..|++..-+.+.+ ...++
T Consensus 178 G~~VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~ 256 (496)
T COG1003 178 GFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDM 256 (496)
T ss_pred CceEEEEecCCCCCccHHHHHHHhccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhcccccccc
Confidence 99999999999999999999999999999999999944 67666 49999999999999999999987444322 45678
Q ss_pred CCcEEEecccCCC-CCCc-----eeEEEEeccccccCCC-ccccCcceEeeecCCCCCCCCCCccCCCCC---CHHHHHH
Q 012718 260 DADFLVASSHKMC-GPTG-----IGFLFGKSDLLSAMPP-FLGGGEMISDVFLDHSTFADPPSRFEAGTP---AIGEAIG 329 (458)
Q Consensus 260 ~~d~~~~s~~K~~-gp~g-----~G~l~~~~~~~~~l~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~---~~~~~~~ 329 (458)
|.|++-.++||.| .|.| .|-+.++..+..-+.. ... ... ..+.. .+... ...-.... +...+..
T Consensus 257 G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~-~~~--~~y~~--~~~~~-~s~g~~~a~~Gs~~il~~ 330 (496)
T COG1003 257 GFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVY-HDV--GEYRL--DYDGK-KSIGVSAAPYGSASILPI 330 (496)
T ss_pred ccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCccc-CCC--ccccc--cCCCC-ccceeeccccCcchHHHH
Confidence 8999999999954 3443 7777777666544431 100 000 00000 00000 00011112 2222333
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE-e---CCCChHHHHHHHhhhcCe
Q 012718 330 LGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN-V---ENIHPTDIATLLDQQYGV 405 (458)
Q Consensus 330 l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~-~---~~~~~~~~~~~l~~~~gi 405 (458)
.++-+..+...|+....+...-+++|+..+|+.. +.+...... ...+-.++..+ + .++...++.++|.+. |+
T Consensus 331 a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~--y~~~y~~~~-~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~-Gf 406 (496)
T COG1003 331 AWAYIRMMGADGLKQASEVAVLNANYIARRLKGY--YPVPYTGEN-RVAHECILDARPLKKETGVRALDVAKRLLDY-GF 406 (496)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc--CccccCCCC-cceeEEEeechHhHhhcCCcHHHHHHHHHhc-CC
Confidence 4445555666678888888889999999999863 544333211 01222233333 1 267889999999987 98
Q ss_pred EeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 406 ATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 406 ~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
.-.+.++. +-+.+.+-|-+.-..+.+++|++++++.++.++.++.
T Consensus 407 HaPT~~FP-------liV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~ 451 (496)
T COG1003 407 HAPTMYFP-------LIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAV 451 (496)
T ss_pred CCCcccCc-------cccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 76544422 1247888898887789999999999999999887653
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-16 Score=158.35 Aligned_cols=343 Identities=12% Similarity=0.038 Sum_probs=214.1
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|..+ .|...+.+.+++.+.+.+..... ... + -..+...++-+.|++.+..+- +.+.|++||+
T Consensus 48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~-~~~---~-~~~~~~~~lAe~L~~~~p~~~-~~v~f~~sGS 121 (461)
T PRK07482 48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYH-TYV---G-HGTEASITLSKRIIDRAPAGM-SKVYYGLSGS 121 (461)
T ss_pred CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccc-ccc---c-cCCHHHHHHHHHHHHhCCCCc-CEEEEeCchH
Confidence 4445666432 35678899999999987642110 000 0 113344456677777764332 3899999999
Q ss_pred HHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHH------HcC---CeEEEEeCCCC------C------
Q 012718 140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQ------KTG---ANLKFLNLNDD------E------ 194 (458)
Q Consensus 140 ~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~------~~g---~~~~~v~~~~~------~------ 194 (458)
+|++.+++..+.. ....+.+|+....+||+.......+.. ..+ ..+..++.... +
T Consensus 122 EAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 201 (461)
T PRK07482 122 DANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQF 201 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHH
Confidence 9999999876311 112356899999999986543332211 011 11222322210 0
Q ss_pred -CCCHHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCC
Q 012718 195 -SPDLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLD 260 (458)
Q Consensus 195 -~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~ 260 (458)
..+++.+++.+. +++.+|+++.++...|.+.+ +++|.++|++||+++|.|+++. +|..- .......
T Consensus 202 ~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~ 281 (461)
T PRK07482 202 SAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIE 281 (461)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCC
Confidence 014567777774 35799999999988898876 8899999999999999999977 43221 1122345
Q ss_pred CcEEEecccCCC-CCC-ceeEEEEeccccccCCCcc--ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 261 ADFLVASSHKMC-GPT-GIGFLFGKSDLLSAMPPFL--GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 261 ~d~~~~s~~K~~-gp~-g~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
+|+++ +.|.+ |+. .+|.+++++++.+.+.... .+... .-.+.+.|+...++..++|+.
T Consensus 282 PDiv~--~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~----------------h~~T~~gnpl~~Aaa~a~L~~ 343 (461)
T PRK07482 282 PDLIT--VAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIG----------------HGWTYSGHPICAAAALANLDI 343 (461)
T ss_pred CCEEE--EccccccCccccceeeecHHHHHHHhcccccCCccc----------------cCCCCCcCHHHHHHHHHHHHH
Confidence 99999 68944 443 5788888887765443210 00000 000124566677777788887
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhc----CCCEEEeCCCCCCcCccccEEEEEeCC-C------C-----hHHHHHHHh
Q 012718 337 LSTIGMQKIHAYEMELAKYLYENLLS----IPNIRIYGPKPSEHVQRAALCSFNVEN-I------H-----PTDIATLLD 400 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~l~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~-~------~-----~~~~~~~l~ 400 (458)
+.+. .+.++.+++.++|.+.|++ .+.+. .. ...|.++.+.+.. . + ...+...+.
T Consensus 344 ~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~---~v----rG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~ 413 (461)
T PRK07482 344 LERE---NLVGNAAEVGAYFRARLRAAFGDHPLVG---EV----RGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAAL 413 (461)
T ss_pred HHhC---CHHHHHHHHHHHHHHHHHHHHhcCCCEE---EE----eeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHH
Confidence 7764 4555566666666666653 33221 11 1235677776632 1 1 245777788
Q ss_pred hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 401 QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 401 ~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
++ |+.++++. ..+.+|+.+++.+|++||+++++.++++++++
T Consensus 414 ~~-Gvl~~~~~-----------~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 414 ER-GVIARAMP-----------HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred HC-CcEEecCC-----------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 88 99875421 13589999998899999999999999999875
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-17 Score=159.24 Aligned_cols=340 Identities=9% Similarity=0.032 Sum_probs=216.8
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|.-.+.+.+++.+.+.+..... ... . ..+...++-+.|++.+...- +.+.|+++|+
T Consensus 42 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~~-~----~~~~~~~lae~L~~~~p~~~-~~v~f~~sGs 114 (429)
T PRK06173 42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIM-FGG-F----THEPAVELAQKLLEILPPSL-NKIFFADSGS 114 (429)
T ss_pred CCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCcc-ccc-c----CCHHHHHHHHHHHhhCCCCc-CEEEEeCCch
Confidence 445566643 235667889999999887642111 000 0 12333456677777764322 3899999999
Q ss_pred HHHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHH-----HcCC-----eEEEEeCCCC------CCCCHH
Q 012718 140 EAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQ-----KTGA-----NLKFLNLNDD------ESPDLD 199 (458)
Q Consensus 140 ~a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~-----~~g~-----~~~~v~~~~~------~~~d~~ 199 (458)
+|++.++...+... -..+.+|+....+||+.......+.. +.+. .+..+|.... ...+++
T Consensus 115 eAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~ 194 (429)
T PRK06173 115 VAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIE 194 (429)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHH
Confidence 99999988653210 02346799999999986432222100 0010 1223332211 011456
Q ss_pred HHHHhhc---CCceEEEEecc-cCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEe
Q 012718 200 KLKEMLS---RKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVA 266 (458)
Q Consensus 200 ~l~~~l~---~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~ 266 (458)
.+++.+. +++.+|+++.. +...|...| ++++.++|++||+++|+|++|. +|... .+.....+|+++
T Consensus 195 ~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~- 273 (429)
T PRK06173 195 PLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMC- 273 (429)
T ss_pred HHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCEEE-
Confidence 6777774 46789999986 888888865 8899999999999999999984 22111 112233589887
Q ss_pred cccCCCC-CC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCcc-CCC--CCCHHHHHHHHHHHHHHHHhC
Q 012718 267 SSHKMCG-PT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF-EAG--TPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 267 s~~K~~g-p~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~g--t~~~~~~~~l~~al~~~~~~g 341 (458)
++|.++ .. .++.++.++++.+.+.+... ..| ..+ ..++...++..++|+.+.+.
T Consensus 274 -~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~-------------------~~~~~~~T~~g~p~~~aaa~a~l~~i~~~- 332 (429)
T PRK06173 274 -IGKALTGGYLTLSATITTEAIAQTICSGEA-------------------KCFMHGPTFMANPLACAIAAESIRLLLES- 332 (429)
T ss_pred -eehhhhCCccccceEEecHHHHHHHhcCCC-------------------CccccCCCCCcCHHHHHHHHHHHHHHHhC-
Confidence 799543 32 37888888877655432100 001 111 25666777777888888764
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhh
Q 012718 342 MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRY 420 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~ 420 (458)
.+.++.+++.++|.+.|+++.++...... ...+.++.+.+.+. ....+.+.|.++ ||.+.+.
T Consensus 333 --~~~~~~~~~g~~l~~~L~~~~~~~~v~~v----Rg~Gl~~~iel~~~~~~~~i~~~l~e~-Gi~v~~~---------- 395 (429)
T PRK06173 333 --PWQQNIQRIEAQLKQELAPAAEFDSVAEV----RVLGAIGVVEMKEPVNMATLQPRFVEH-GIWVRPF---------- 395 (429)
T ss_pred --CHHHHHHHHHHHHHHHHHHhhcCCCeeee----eccceEEEEEeCCcccHHHHHHHHHHC-CeEEEec----------
Confidence 34777788888888888754222212111 13366777877642 356788889888 9998642
Q ss_pred cCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 421 LGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 421 ~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.+|+.+++..+++|+++++++|+++++++
T Consensus 396 ---g~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 396 ---GKLVYIMPPFIISPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred ---CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 2489999999999999999999999999764
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-17 Score=159.71 Aligned_cols=342 Identities=10% Similarity=0.046 Sum_probs=214.9
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|.. ..|.-.+.+.+++.+.+.+...... ... ..+...++-+.|++.++... +.+.|++||+
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~-~~~-----~~~~~~~la~~L~~~~p~~~-~~v~f~~SGs 113 (428)
T PRK07986 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMF-GGI-----THPPAIELCRKLVAMTPQPL-ECVFLADSGS 113 (428)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccc-ccc-----CCHHHHHHHHHHHhhCCCCc-CEEEEeCCcH
Confidence 344566643 3356678899999998876432111 000 12334456677777765332 3899999999
Q ss_pred HHHHHHHHHcCCCC---CCCCCEEEEcCCCCccchHHHHHHHHH-------cC---CeEEEEeCCCCC------CCCHHH
Q 012718 140 EAINLVAYSWGLSN---LKSGDEVILTVAEHHSAIVPWQLVAQK-------TG---ANLKFLNLNDDE------SPDLDK 200 (458)
Q Consensus 140 ~a~~~~~~~l~~~~---~~~g~~vl~~~~~~~s~~~~~~~~a~~-------~g---~~~~~v~~~~~~------~~d~~~ 200 (458)
+|++.+++..+... -.++.+|+....+||+.......+... .+ -.+..++..... .-|+++
T Consensus 114 EAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~ 193 (428)
T PRK07986 114 VAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAP 193 (428)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHH
Confidence 99999998653210 023568999999999865443332110 00 012223322110 125667
Q ss_pred HHHhhc---CCceEEEEecc-cCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEec
Q 012718 201 LKEMLS---RKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVAS 267 (458)
Q Consensus 201 l~~~l~---~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s 267 (458)
+++.+. +++.+|+++.. +...|...+ +++|.++|++||+++|+|++|. +|.. ..+.....+|+++
T Consensus 194 l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t-- 271 (428)
T PRK07986 194 FARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILC-- 271 (428)
T ss_pred HHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCEEE--
Confidence 777775 35678888885 777777554 8899999999999999999984 2221 1122234589886
Q ss_pred ccCCCC-C-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 268 SHKMCG-P-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 268 ~~K~~g-p-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
++|.+| . ..+|.+++++++.+.+.....+... ... ..+.++...++..++|+.+.+. .+
T Consensus 272 ~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~---------------~~~-T~~g~p~~~aaa~a~L~~i~~~---~~ 332 (428)
T PRK07986 272 LGKALTGGTMTLSATLTTREVAETISNGEAGCFM---------------HGP-TFMGNPLACAVANASLSLLESG---DW 332 (428)
T ss_pred echhhhCCcccCcchhchHHHHHHhhcCCCCccc---------------cCC-CCCcCHHHHHHHHHHHHHHHhC---CH
Confidence 789443 3 2478888888877665421100000 000 1135666777777788887764 45
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
.++.+++.++|.+.|+++......... ...+.++.+.+.. .....+.+.+.++ |+.+.+. .
T Consensus 333 ~~~~~~~g~~l~~~l~~l~~~~~i~~v----Rg~Gl~~~ve~~~~~~~~~~~~~l~~~-Gl~~~~~-------------g 394 (428)
T PRK07986 333 QQQVAAIEAQLREELAPLRDAPMVADV----RVLGAIGVVETTRPVNMAALQRFFVEQ-GVWIRPF-------------G 394 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEeE----eccceEEEEEeCCcccHHHHHHHHHHC-CcEEEec-------------C
Confidence 777778888888877764211111111 2335677777653 2356788888888 9998642 2
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 425 ASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+.+|+.+++..|++||++++++|++++++
T Consensus 395 ~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 395 KLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 48999999989999999999999999863
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=157.53 Aligned_cols=339 Identities=12% Similarity=0.122 Sum_probs=216.0
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+.......+. ..+...++-+.|++.++..-+ .+.|+++|+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~------~~~~~~~lAe~L~~~~p~~~~-~v~f~~sGs 124 (453)
T PRK06943 52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGC------THEPAIELAERLAALTGGTLG-HAFFASDGA 124 (453)
T ss_pred CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCcccccc------CCHHHHHHHHHHHHhCCCCCC-EEEEeCCCH
Confidence 344566643 3567789999999999876422111010 122334566777777654323 899999999
Q ss_pred HHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHH----cC-----CeEEEEeCCCC-C-----------
Q 012718 140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQK----TG-----ANLKFLNLNDD-E----------- 194 (458)
Q Consensus 140 ~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~----~g-----~~~~~v~~~~~-~----------- 194 (458)
+|++.+++..+.. ....+.+|+....+||+.......+... .+ ..+..++.... +
T Consensus 125 eAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 204 (453)
T PRK06943 125 SAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVA 204 (453)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHH
Confidence 9999999865210 1223568999999999876443332110 00 01233333211 0
Q ss_pred CCCHHHHHHhhc---CCceEEEEec-ccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCC
Q 012718 195 SPDLDKLKEMLS---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDA 261 (458)
Q Consensus 195 ~~d~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~ 261 (458)
.-+++.+++.++ +++.+|+++. ++...|...+ ++++.++|++||+++|.|+++. +|..- + +.....+
T Consensus 205 ~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~P 284 (453)
T PRK06943 205 ARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWP 284 (453)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCC
Confidence 013466777774 4678999998 4888898776 8999999999999999999975 44321 1 1223459
Q ss_pred cEEEecccC-CCCCC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccC--CCCCCHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHK-MCGPT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFE--AGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 262 d~~~~s~~K-~~gp~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~~~~~l~~al~~~ 337 (458)
|+++ +.| +.|+. .+|.+++++++.+.+......+ ..+. +.+.+....++..++|+.+
T Consensus 285 Divt--~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~-----------------~~~~~~T~~gnpl~~aaa~a~L~~i 345 (453)
T PRK06943 285 DFLC--LSKGISGGYLPLSLVLSRDAIFAAFYDDDVTR-----------------GFLHSHSYTGNPLACRAALATLDLF 345 (453)
T ss_pred CeEe--eehhhccCcccceEEEEcHHHHHhhcccCccC-----------------CccCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999 589 44442 4899999998766554210000 0011 1235666777777888888
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeC-CCC-----hHHHHHHHhhhcCeEec
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVE-NIH-----PTDIATLLDQQYGVATR 408 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~-~~~-----~~~~~~~l~~~~gi~~~ 408 (458)
.+. .+.++.+++.++|.+.|+++ +++. .. ...|.++.+.+. +.+ ...+.+.+.++ |+.+.
T Consensus 346 ~~~---~l~~~~~~~G~~l~~~L~~l~~~~~v~---~v----rG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~-Gll~~ 414 (453)
T PRK06943 346 AED---DVLARNARKSARLRAALAPLAAHPQVR---HL----RQRGTIFAFDVALDGDAARTFSRRFFEAALER-ELLLR 414 (453)
T ss_pred Hhc---CHHHHHHHHHHHHHHHHHHHhcCCCEE---eE----eccccEEEEEEccCCCcchHHHHHHHHHHHHC-CcEEE
Confidence 764 45566666677777776554 3322 11 233667777764 211 24577778888 99886
Q ss_pred cCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 409 SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 409 ~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+. .+.+|+++.+..|++||++++++|+++++++
T Consensus 415 ~~-------------g~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 415 PI-------------GTTVYLMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred ec-------------CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 42 2469999998899999999999999999875
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-16 Score=152.08 Aligned_cols=336 Identities=13% Similarity=0.140 Sum_probs=210.6
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|.-.+.+.+++.+.+.+..... ...+ ..+...++-+.|++.+.....+.+.|++||+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~-----~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGs 125 (441)
T PRK05769 52 DGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYS-LTDF-----YYEPAVELAERLVEIAPGGFEKKVFFTNSGT 125 (441)
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCcc-Cccc-----CCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence 344566643 244567889999999887632111 0000 1233445667777776532223899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-----cC-----CeEEEEeCCCCCC-------------C
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG-----ANLKFLNLNDDES-------------P 196 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~g-----~~~~~v~~~~~~~-------------~ 196 (458)
+|++.+++..+. ...+++|+....+||+.......+... .+ ..+..++...... -
T Consensus 126 EA~e~AlklAr~--~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (441)
T PRK05769 126 ESNEAAIKIARY--HTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNA 203 (441)
T ss_pred HHHHHHHHHHHH--HhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHH
Confidence 999999986642 345678999999999887554433110 00 1133343321100 0
Q ss_pred CHHHHHH-hhc-----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--CCCC--CCCC
Q 012718 197 DLDKLKE-MLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDVQ--GLDA 261 (458)
Q Consensus 197 d~~~l~~-~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~~~~--~~~~ 261 (458)
+++.+++ .++ +++.+|+++.+....|.+.| +++|.++|++||+++|+|+++. +|... +... ...+
T Consensus 204 ~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~p 283 (441)
T PRK05769 204 VLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEP 283 (441)
T ss_pred HHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCC
Confidence 1233555 222 35789999999999999998 9999999999999999999988 33221 1111 2347
Q ss_pred cEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh
Q 012718 262 DFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI 340 (458)
Q Consensus 262 d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 340 (458)
|+++ ++|.+| +..+|+++.++++.+.+. ...+ . ..+.+....++..++|+.+.+
T Consensus 284 Divt--~~K~l~~G~p~gav~~~~~i~~~~~-~~~~--------------------~-T~~g~p~~~aaa~a~L~~l~~- 338 (441)
T PRK05769 284 DIIT--LAKAIAGGLPLGAVIGRAELMFLPP-GSHA--------------------N-TFGGNPVAAAAALATLEELEE- 338 (441)
T ss_pred CEEE--EcccccCCcccEEEEEehhhhhcCC-CCCC--------------------C-CCCcCHHHHHHHHHHHHHHHH-
Confidence 9886 679544 334888999888753221 1110 0 112355556666677777754
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC-------ChHHHHHHHhhhcCeEeccCCC
Q 012718 341 GMQKIHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI-------HPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
.+.++.+++.++|.+.|+++. .+.+.... ...+.++.+.+... ....+.+.+.++ ||.+.+..
T Consensus 339 ---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v----rg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-Gil~~~~~- 409 (441)
T PRK05769 339 ---GLLENAQKLGEYLRKELKELKEKYEFIGDV----RGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKR-GLLLLGAG- 409 (441)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhCCCeeee----ecceEEEEEEeccCCccccHHHHHHHHHHHHhC-CcEEecCC-
Confidence 556677777777777775541 01111111 23355777766321 123566777777 99886422
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
...+|+++.+.+|++|||+++++++++++++
T Consensus 410 -----------~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 410 -----------KSAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred -----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4689999998899999999999999998754
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-17 Score=159.34 Aligned_cols=345 Identities=10% Similarity=0.094 Sum_probs=218.7
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|..+ .|...+.+.+++.+.+.+.......+. ..+...++-+.|++++.... +.+.|++||+
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~------~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs 126 (460)
T PRK06916 54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGL------ANVPSILLAEKLIEVVPEGL-KKVFYSDSGA 126 (460)
T ss_pred CCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCcccccc------CCHHHHHHHHHHHHhCCCCC-CEEEEeCCcH
Confidence 4556677432 467788899999999886422111110 12333456677778775332 3899999999
Q ss_pred HHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHHcC---------CeEEEEeCCCC-----C-C-----
Q 012718 140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQKTG---------ANLKFLNLNDD-----E-S----- 195 (458)
Q Consensus 140 ~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g---------~~~~~v~~~~~-----~-~----- 195 (458)
+|++.+++..+.. ....+.+|+....+||+.......+..... ..+..+|.... + .
T Consensus 127 eAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~ 206 (460)
T PRK06916 127 TAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIV 206 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHH
Confidence 9999999865321 013356899999999987654433211100 11233432210 0 0
Q ss_pred -CCHHHHHHhhc---CCceEEEEec-ccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCC
Q 012718 196 -PDLDKLKEMLS---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA 261 (458)
Q Consensus 196 -~d~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~ 261 (458)
.+++.+++.++ +++.+|+++. ++...|.+.+ ++++.++|+++|+++|.|+++. +|..- .......+
T Consensus 207 ~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~P 286 (460)
T PRK06916 207 KKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTP 286 (460)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCC
Confidence 13556677775 4678999998 5888898875 8999999999999999999975 33221 11223458
Q ss_pred cEEEecccC-CCCCC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccC--CCCCCHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHK-MCGPT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFE--AGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 262 d~~~~s~~K-~~gp~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~~~~~l~~al~~~ 337 (458)
|+++ +.| +.|+. .+|.+++++++.+.+.+-..... ..+. .-+.+....++..++|+.+
T Consensus 287 Div~--~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~----------------~~~~~~T~~gnpl~~aaa~a~l~~l 348 (460)
T PRK06916 287 DIMT--AGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQK----------------TFFHGHSYTGNPLGCAVALANLELY 348 (460)
T ss_pred Ceee--eehhhhcCccccceeeecHHHHHHhhccccccC----------------ccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9887 689 44442 48999999887655432100000 0011 1124666677777778877
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC---------C---hHHHHHHHhhhcCe
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI---------H---PTDIATLLDQQYGV 405 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~---~~~~~~~l~~~~gi 405 (458)
.+. .+.++++++.+++.+.|+++....+.... ...|.++.+.+... + ...+...+.++ |+
T Consensus 349 ~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~v----rG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gv 420 (460)
T PRK06916 349 EKT---NLIEQVARKTEYVATQLEDLFALKHVGDI----RQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSREL-GM 420 (460)
T ss_pred Hhc---cHHHHHHHHHHHHHHHHHHhhcCCCeEEe----ecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHC-Ce
Confidence 663 46677888888888888765221111111 23355666666321 0 24577778888 99
Q ss_pred EeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 406 ATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 406 ~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.+. .+.+|+.+++..|++||++++++++++++++.+
T Consensus 421 l~~~~-------------g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06916 421 LTRPL-------------GNTIVFMPPLASTIDELDEMLRILYKAISDVTE 458 (460)
T ss_pred EEEec-------------CCEEEEeCCcccCHHHHHHHHHHHHHHHHhhcc
Confidence 98642 248999999889999999999999999987654
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-17 Score=164.73 Aligned_cols=306 Identities=16% Similarity=0.144 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
...++++..|+.+|++. ..++++|+|.++..++.+. +++||+|++...+|-|+..+ .....|+.++++...
T Consensus 175 ~i~eAq~~AA~~fgAd~--tyFlvNGTS~gn~a~i~a~----~~~Gd~VLvdRN~HKSv~hg---aLiLsGa~PVYl~P~ 245 (720)
T PRK13578 175 AAKDAQKHAAKVFNADK--TYFVLNGTSASNKVVTNAL----LTPGDLVLFDRNNHKSNHHG---ALIQAGATPVYLETA 245 (720)
T ss_pred HHHHHHHHHHHHhCCCc--eEEEeCChhHHHHHHHHHh----cCCCCEEEeecccHHHHHHH---HHHHcCCeEEEeecc
Confidence 45678899999999984 6788999999999999987 89999999999999987653 123459999998765
Q ss_pred CC-----CCCCHHH-----HHHhhcCC----------ceEEEEecccCcCcccccHHHHHHH-HHhcCcEEEEeccccC-
Q 012718 192 DD-----ESPDLDK-----LKEMLSRK----------TKLVVIHHISNMLASILPIEEIVHW-SHDVGAKVLVDACQSV- 249 (458)
Q Consensus 192 ~~-----~~~d~~~-----l~~~l~~~----------~~~v~~~~~~n~tG~~~~l~~i~~l-~~~~~~~vivD~a~~~- 249 (458)
-+ +.++.+. ++++|.+. .++++++++ +..|.+.+++.|+++ ++.++ .|++|+||+.
T Consensus 246 ~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah 323 (720)
T PRK13578 246 RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHLCD-YILFDSAWVGY 323 (720)
T ss_pred ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhccCC-cEEEeCcchhh
Confidence 32 3455444 88777653 478888887 669999999999999 68888 9999999882
Q ss_pred -CcccC------CCCCCCCc----EEEecccCCC-CCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCcc
Q 012718 250 -PHMVV------DVQGLDAD----FLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF 317 (458)
Q Consensus 250 -g~~~~------~~~~~~~d----~~~~s~~K~~-gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (458)
...|. ..-+.++| +++-|.||.+ +....++|.++.+.++.-+.+.. ...+...-..+
T Consensus 324 ~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~-----------~~r~~~al~m~ 392 (720)
T PRK13578 324 EQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCP-----------HKRLNNAFMLH 392 (720)
T ss_pred hccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCC-----------HHHHHHHHHHH
Confidence 21221 11245788 9999999965 46778899887655431110000 00000000234
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-hcCCCEEEeCCCCCC---------------------
Q 012718 318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL-LSIPNIRIYGPKPSE--------------------- 375 (458)
Q Consensus 318 ~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L-~~~~~~~~~~~~~~~--------------------- 375 (458)
.+.+|++..++++..+..++....-.++.+.+.+++..+++.| +.++++++..+....
T Consensus 393 qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~ 472 (720)
T PRK13578 393 ASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSF 472 (720)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhccccccccc
Confidence 4678888889999888888776323455566667777777777 666677766332000
Q ss_pred -c--C------------cccc-EEEEEeCCCC------------hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeE
Q 012718 376 -H--V------------QRAA-LCSFNVENIH------------PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASA 427 (458)
Q Consensus 376 -~--~------------~~~~-~v~~~~~~~~------------~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~l 427 (458)
+ . .--+ =+++..++.+ ...+.+.|+++ ||.+.-.. ...+
T Consensus 473 ~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~-gI~~E~~d------------~~~v 539 (720)
T PRK13578 473 EPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLREN-GIVPEKCD------------LNSI 539 (720)
T ss_pred ccCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHc-CCEEEecC------------CCeE
Confidence 0 0 0012 1334445555 57899999888 99874222 3455
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 428 RASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 428 Ris~~~~~t~~di~~l~~~l~~~~~ 452 (458)
-+-+++..+.+++++|+++|.++-+
T Consensus 540 L~l~s~g~t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 540 LFLLTPAEDMAKLQQLVAMLARFEK 564 (720)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 5656666899999999999998754
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-17 Score=156.94 Aligned_cols=343 Identities=10% Similarity=0.058 Sum_probs=215.5
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|.. ..|...+.+.+++.+.+++..... ... . ..+...++.+.|++.++..- +.+.|++||+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~-~~~-~----~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs 110 (422)
T PRK05630 38 DGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVM-FGG-L----THEPAIKLTRKLLNLTDNGL-DHVFYSDSGS 110 (422)
T ss_pred CCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcc-cCC-c----CCHHHHHHHHHHHhhCCCCc-CEEEEeCCcH
Confidence 445666643 356678899999999987642111 000 0 12233456677777764322 3899999999
Q ss_pred HHHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHHHc-------C---CeEEEEeCCCCCCCC-------H
Q 012718 140 EAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQKT-------G---ANLKFLNLNDDESPD-------L 198 (458)
Q Consensus 140 ~a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~~~-------g---~~~~~v~~~~~~~~d-------~ 198 (458)
+|++.++...+... ...+.+|+....+||+.......+.... + .....+|.......+ .
T Consensus 111 eA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 190 (422)
T PRK05630 111 VSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYL 190 (422)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHH
Confidence 99999998653210 0134689999999998764433321100 0 112333332111111 2
Q ss_pred HHHHHhhcCCceEEEEecc-cCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecc
Q 012718 199 DKLKEMLSRKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASS 268 (458)
Q Consensus 199 ~~l~~~l~~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~ 268 (458)
+.+++.+.+++.+|+++.. +...|...| +++|.++|++||+++|+|+++. +|... .......+|+++ +
T Consensus 191 ~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t--~ 268 (422)
T PRK05630 191 RSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMC--V 268 (422)
T ss_pred HHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeee--e
Confidence 3455556668899999985 888888776 8899999999999999999985 32210 112234589885 7
Q ss_pred cCCC-CC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 269 HKMC-GP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 269 ~K~~-gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
.|.+ |+ ..+|++++++++.+.+..... .+. +. -..+.+.++...++..++++.+.+. ...
T Consensus 269 gK~l~gG~~p~~av~~~~~i~~~~~~~~~-~~~----~~----------h~~T~~g~Pla~aaa~aaL~~l~~~---~~~ 330 (422)
T PRK05630 269 GKALTGGFMSFAATLCTDKVAQLISTPNG-GGA----LM----------HGPTFMANPLACAVAHASLEIIETG---MWR 330 (422)
T ss_pred echhhcCccccceeeccHHHHHHHhccCC-CCc----cc----------cCCCCcCCHHHHHHHHHHHHHHHhC---cHH
Confidence 8954 43 347888898887665531100 000 00 0001236666777777888888764 345
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
++..++.++|.+.|+.+......... ..+|.++.+.+.+. ....+.+.+.++ |+.+.+. .+
T Consensus 331 ~~~~~~g~~l~~~L~~l~~~~~v~~v----Rg~Gl~~~ie~~~~~~~~~~~~~~~~~-Gl~~~~~-------------g~ 392 (422)
T PRK05630 331 KQVKRIEAELIAGLSPLAHLPGVADV----RVLGAIGVVEMEQPVDMEEATQAAVDH-GVWLRPF-------------GR 392 (422)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCeeee----eccccEEEEEECCcccHHHHHHHHHHC-CeEEEec-------------CC
Confidence 57777778877777643111111111 23466888887542 356788888888 9998642 25
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.+|+.+++..|++|||+++++|+++++.
T Consensus 393 ~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 393 LVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred EEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 8999999989999999999999999863
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-16 Score=157.23 Aligned_cols=343 Identities=10% Similarity=0.066 Sum_probs=216.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+.......+. ..+...++-+.|++.+.... +.+.|++||+
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~------~~~~~~~lae~L~~~~p~~~-~~v~f~~sGs 117 (466)
T PRK07030 45 EGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGF------SHEPVIELSERLVKITPPGL-SRCFYADNGS 117 (466)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCcccccc------CCHHHHHHHHHHHHhCCCCc-CEEEEeCCcH
Confidence 344566643 2456778899999998876421110010 12334456677777764322 3899999999
Q ss_pred HHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHHc----C-----CeEEEEeCCCC-----C-------
Q 012718 140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQKT----G-----ANLKFLNLNDD-----E------- 194 (458)
Q Consensus 140 ~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~~----g-----~~~~~v~~~~~-----~------- 194 (458)
+|++.+++..+.. ....+.+|+....+||+.......+.... + ..+..+|.... +
T Consensus 118 EAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~ 197 (466)
T PRK07030 118 SAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHS 197 (466)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHH
Confidence 9999999865311 11235689999999998765433321100 0 01223332211 0
Q ss_pred CCCHHHHHHhhc---CCceEEEEec-ccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCC
Q 012718 195 SPDLDKLKEMLS---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDA 261 (458)
Q Consensus 195 ~~d~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~ 261 (458)
.-+++.+++.+. +++.+|+++. ++...|.+.+ +++|.++|+++|+++|.|+++. +|..- + +.....+
T Consensus 198 ~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~P 277 (466)
T PRK07030 198 RRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRP 277 (466)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCC
Confidence 012455677774 4678999998 6888888776 8899999999999999999976 44321 1 2223459
Q ss_pred cEEEecccC-CCCCC-ceeEEEEeccccccCCCcc--ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHK-MCGPT-GIGFLFGKSDLLSAMPPFL--GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 262 d~~~~s~~K-~~gp~-g~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
|+++ +.| +.|.. .+|.+++++++.+.+..-. .++.. ...+.+.++...++..++|+.+
T Consensus 278 Div~--~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~----------------h~~T~~gnpla~aaa~a~L~~i 339 (466)
T PRK07030 278 DFLC--LSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFL----------------HSHSYTGNPLACAAALATLDIF 339 (466)
T ss_pred CEEe--eehhccCCcccceEEEecHHHHHHHhcccccccccc----------------cCCCCCCCHHHHHHHHHHHHHH
Confidence 9999 579 44442 4899999998765543110 00000 0011235666777777888888
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC------------hHHHHHHHhhhcCe
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH------------PTDIATLLDQQYGV 405 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~l~~~~gi 405 (458)
.+. .+.++.+++.++|.+.|+++......... ...|.++.+.+.... ...+.+.+.++ |+
T Consensus 340 ~~~---~l~~~~~~~G~~l~~~L~~l~~~~~v~~v----rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gv 411 (466)
T PRK07030 340 EQD---NVIENNRALARRMAEATAHLADHPHVAEV----RQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALER-GA 411 (466)
T ss_pred Hhc---CHHHHHHHHHHHHHHHHHHHhcCCCEEEe----EeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHC-Ce
Confidence 763 46677777888888777654211111111 233567777663210 13567777778 99
Q ss_pred EeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 406 ATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 406 ~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.+. .+.+|+.+++..|++||+++++.++++++++
T Consensus 412 l~~~~-------------g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 412 LLRPL-------------GSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred EEEec-------------CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 88642 2479999998899999999999999999876
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=157.38 Aligned_cols=344 Identities=13% Similarity=0.026 Sum_probs=209.6
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+..... ... + -..+...++-+.|++.++... +.+.|++||+
T Consensus 48 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~---~~~-~-~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs 121 (456)
T PRK07480 48 EGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYN---TFF-K-TTHPPAIELAAKLAEVAPPGF-NHVFFTNSGS 121 (456)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcc---ccc-c-cCCHHHHHHHHHHHHhCCCCc-CEEEEeCCcH
Confidence 344566653 345678899999999887642111 000 0 012344456677778775433 3899999999
Q ss_pred HHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHH------HcCC---eEEEEeCCCCC----CCC-----
Q 012718 140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQ------KTGA---NLKFLNLNDDE----SPD----- 197 (458)
Q Consensus 140 ~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~------~~g~---~~~~v~~~~~~----~~d----- 197 (458)
+|++.+++..+.. ....+.+|+....+||+.......+.. ..+. .+..++..... ..+
T Consensus 122 eA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 201 (456)
T PRK07480 122 EANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFG 201 (456)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHH
Confidence 9999999865321 002245799999999986533222110 0010 11222211100 001
Q ss_pred ---HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCC
Q 012718 198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA 261 (458)
Q Consensus 198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~ 261 (458)
++.+++.+. +++.+|+++.++...|.+.| ++.|.++|++||+++|+|+++. +|..- .......+
T Consensus 202 ~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~P 281 (456)
T PRK07480 202 LAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKP 281 (456)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCC
Confidence 245555442 46789999999998899887 8999999999999999999985 54321 12223458
Q ss_pred cEEEecccCCCC-CC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMCG-PT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 262 d~~~~s~~K~~g-p~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
|+++ ++|.++ .. .+|.+++++++.+.+... .+... ...+.+.++...++..++|+.+.+
T Consensus 282 Div~--~gK~l~gG~~Pi~av~~~~~i~~~~~~~-~~~~~----------------~~~T~~gnpl~~Aaa~a~L~~l~~ 342 (456)
T PRK07480 282 DLMT--IAKGLTSGYIPMGAVGVGDRVAEVLIEE-GGEFN----------------HGFTYSGHPVAAAVALANLRILRD 342 (456)
T ss_pred Ceee--eehhhccCCccceEEEEcHHHHHHHhcC-CCCcc----------------cCCCCCcCHHHHHHHHHHHHHHHh
Confidence 9877 689443 32 378888888876555200 00000 001224567777777788888876
Q ss_pred hCHHHHHHHH-HHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC--------C----hHHHHHHHhhhcCeE
Q 012718 340 IGMQKIHAYE-MELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI--------H----PTDIATLLDQQYGVA 406 (458)
Q Consensus 340 ~g~~~~~~~~-~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~----~~~~~~~l~~~~gi~ 406 (458)
.+ +.++. +++.++|.+.|+++....+.... ...|.++.+.+... . ...+...+.++ |+.
T Consensus 343 ~~---l~~~~~~~~g~~l~~~l~~l~~~~~i~~v----rG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll 414 (456)
T PRK07480 343 EG---IVERVRDDTGPYLQKRLRELADHPLVGEV----RGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFAN-GLI 414 (456)
T ss_pred CC---HHHHHHHHHHHHHHHHHHHhhcCCCeeeE----EeecceEEEEEeccccccccCcchhhHHHHHHHHHHHC-CcE
Confidence 43 44555 35666666666543211111111 23355777766311 0 13456667777 998
Q ss_pred eccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 407 TRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 407 ~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.+. .+.+|+++.+..|++|||+++++|++++++++
T Consensus 415 ~~~~-------------~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~ 450 (456)
T PRK07480 415 MRAV-------------GDRMIISPPLVITHAEIDELVEKARKALDATA 450 (456)
T ss_pred Eeec-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8531 35799999988899999999999999998774
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=153.28 Aligned_cols=321 Identities=21% Similarity=0.252 Sum_probs=223.4
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.++..+.+.+++..+-..... .....+......++.+..|+++|.+. .++|..| -..+...+-++ +.
T Consensus 153 ~g~ca~~~~~~~~kygl~~cs------s~~e~G~~~~hkelE~l~A~f~g~e~--a~vF~mG-f~TNs~~~p~l----~~ 219 (519)
T KOG1357|consen 153 VGPCAEASLKSFDKYGLSRCS------SRHEAGTTEEHKELEELVARFLGVED--AIVFSMG-FATNSMNIPSL----LG 219 (519)
T ss_pred CCcCChHHHHHHHHhcccccc------cchhcccHHHHHHHHHHHHHhcCCcc--eEEEecc-ccccccCccee----ec
Confidence 446778888887776432111 11112346677789999999999984 6777665 22333334444 78
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-------------CceEEEEecccCcCc
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-------------KTKLVVIHHISNMLA 222 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-------------~~~~v~~~~~~n~tG 222 (458)
+|.-|+..+..|.|.+.. |+.-|+.++....+ |..+||+.|++ +..+|++....+.-|
T Consensus 220 ~gsLIiSDelNHaSi~~G----aRLSgAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg 290 (519)
T KOG1357|consen 220 KGSLIISDELNHASLITG----ARLSGATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEG 290 (519)
T ss_pred CCcceeeccccchheecc----ccccCceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccC
Confidence 999999999999987544 34458899888876 67777777653 224777888889999
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcccC---------CCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCc
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---------DVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~ 293 (458)
.+.++.+++++++++.++++.|++|+.|+++. ..+..++|++.+.+.|.||..| |++..++++++.++..
T Consensus 291 ~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G-Gyiagsk~lid~lrt~ 369 (519)
T KOG1357|consen 291 TIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG-GYIAGSKELIDYLRTP 369 (519)
T ss_pred eecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc-ceecCcHHHHhhhccC
Confidence 99999999999999999999999999887732 1334458999999999998774 8999999988877643
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI----GMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~----g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
..... +. .+.+.+.......+++.+... +-.+..+++.++..+++..|.+. ++-++
T Consensus 370 s~~~~------------------ya-t~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivy 429 (519)
T KOG1357|consen 370 SPSAL------------------YA-TSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GFIVY 429 (519)
T ss_pred CCcee------------------ec-ccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEe
Confidence 22111 11 122222223333444544321 24566788889999999999988 99888
Q ss_pred CCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
+... +|++.+-+- ......+.+.+.++ +|.+....+...|+. ...+|++.+..++.|++|++++.++
T Consensus 430 G~~d------SpVvplll~~~~k~~~f~r~~l~~-nigvVvvgfPatpl~-----e~r~R~c~Sa~ht~e~ld~~l~~i~ 497 (519)
T KOG1357|consen 430 GNND------SPVVPLLLYGPAKIVAFSREMLER-NIGVVVVGFPATPLL-----ESRARFCLSASHTKEDLDRALEVID 497 (519)
T ss_pred cCCC------CCcceeeecCcccccHHHHHHHhc-CceEEEEeCCCchHH-----HhHHHhhhcccccHHHHHHHHHHHh
Confidence 8764 555444332 22344677777777 777665666555543 4578998888899999999999988
Q ss_pred HHH
Q 012718 449 ETV 451 (458)
Q Consensus 449 ~~~ 451 (458)
+.=
T Consensus 498 ~~g 500 (519)
T KOG1357|consen 498 RVG 500 (519)
T ss_pred hhc
Confidence 764
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-16 Score=149.21 Aligned_cols=302 Identities=17% Similarity=0.148 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-
Q 012718 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN- 191 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~- 191 (458)
+.++++.+++++|.+ .+++|++||.|++++.. + .+++||.| +.+.|.... ....+..|+.++.++.+
T Consensus 73 ~~~lE~~va~~~G~~---~av~v~sGT~Al~ll~~-l---~l~pGDeV--psn~~f~Tt---~ahIe~~Gav~vDi~~de 140 (450)
T TIGR02618 73 FYHLERTVRELYGFK---YVVPTHQGRGAENLLSQ-I---AIKPGDYV--PGNMYFTTT---RYHQEKNGATFVDIIIDE 140 (450)
T ss_pred HHHHHHHHHHHHCCC---eEEEcCCHHHHHHHHHH-h---CCCCcCEE--CCceeHHHH---HHHHHhCCeEEEeeeccc
Confidence 457889999999998 89999999999998753 3 38899977 666665443 22235568766666433
Q ss_pred ---------CCCCCCHHHHHHhhcC----CceEEEEecccCcC-ccccc---HHHHHHHHHhcCcEEEEeccccCCcccC
Q 012718 192 ---------DDESPDLDKLKEMLSR----KTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVV 254 (458)
Q Consensus 192 ---------~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~ 254 (458)
.+|.+|++.+++.|++ ++++|++..++|.. |...| +++|.++|++||+.+|.|+++.++.-.+
T Consensus 141 a~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~ 220 (450)
T TIGR02618 141 AHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYF 220 (450)
T ss_pred ccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhh
Confidence 3588999999999986 34578888887865 78865 7899999999999999999998754211
Q ss_pred -----------CCC------CCCCcEEEecccCC-CCCCceeEEEE-eccccccCCCcc--ccCcceEeeecCCCCCCCC
Q 012718 255 -----------DVQ------GLDADFLVASSHKM-CGPTGIGFLFG-KSDLLSAMPPFL--GGGEMISDVFLDHSTFADP 313 (458)
Q Consensus 255 -----------~~~------~~~~d~~~~s~~K~-~gp~g~G~l~~-~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~ 313 (458)
++. ....|.+++|++|- ++|. .|++.. +++++++++... .++.
T Consensus 221 I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~-GG~l~~~d~~l~~k~r~~~~~~eG~--------------- 284 (450)
T TIGR02618 221 IKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNI-GGFLCMNDDEMFQSAKELVVVFEGM--------------- 284 (450)
T ss_pred hhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCC-ceEEEeCCHHHHHHHHHHhhhcCCc---------------
Confidence 110 01389999999995 4565 466665 446666655331 1111
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe----CC
Q 012718 314 PSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV----EN 389 (458)
Q Consensus 314 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~ 389 (458)
.+.|...-..+.++..+|+...+ ....++.....++|.+.|.+. |+.+..+.. +..|.+.. |.
T Consensus 285 ---~tyGgla~r~~~ala~gL~e~~~---~~y~~~r~~~a~~La~~L~~~-Gvpv~~p~g------gh~V~vda~~~lph 351 (450)
T TIGR02618 285 ---PSYGGLAGRDMEAMAIGIREAVD---YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVG------GHAVFLDARRFLPH 351 (450)
T ss_pred ---cccCchhhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHC-CCcccCCCC------cceEEEEhHHhCCC
Confidence 11233333445555556655433 245566667799999999988 998866542 44666654 22
Q ss_pred -----CChHHHHHHHhhhcCeEec-cCCCCChhh---HhhcC-CCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhh
Q 012718 390 -----IHPTDIATLLDQQYGVATR-SGHHCAQPL---HRYLG-VNASARASLH-FYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 390 -----~~~~~~~~~l~~~~gi~~~-~g~~~~~~~---~~~~g-~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.....+...|....||-.. -|++..... ..... .-..+|+.++ -.-|.+.+|...+.+..+.++-.
T Consensus 352 ~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~ 428 (450)
T TIGR02618 352 IPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRD 428 (450)
T ss_pred CChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHh
Confidence 2345667777655587432 233211100 00000 0368999987 22377999999999999887643
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-16 Score=154.58 Aligned_cols=339 Identities=15% Similarity=0.145 Sum_probs=211.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC--CCcEEEe-C
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD--SGEIVFT-K 136 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~--~~~v~~t-~ 136 (458)
++--|+|.. ..|...+.+.+++.+.+.+..... .... ..+...++-+.|.+.+...- .+.++|+ +
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~--~~~~----~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~ 134 (464)
T PRK06938 61 EGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLH--TLDL----TTPVKDQFVQDLFASLPEAFAREAKIQFCGP 134 (464)
T ss_pred CCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhccc--cccc----CCHHHHHHHHHHHHhCcccccccceEEEeCC
Confidence 445666642 345677889999999886421111 0001 12223344455666654221 1256665 7
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHc------C---CeEEEEeCCCCCC------------
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT------G---ANLKFLNLNDDES------------ 195 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~------g---~~~~~v~~~~~~~------------ 195 (458)
+|++|++.+++..+ ....+.+|+....+||+.......+.... + -.+..++......
T Consensus 135 SGSEAve~AlklAr--~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 212 (464)
T PRK06938 135 TGTDAVEAALKLVK--TATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVR 212 (464)
T ss_pred CcHHHHHHHHHHHH--HhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHH
Confidence 99999999998764 23456789999999998875544432110 0 0233444332110
Q ss_pred CCHHHHHHhhcC------CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCC
Q 012718 196 PDLDKLKEMLSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLD 260 (458)
Q Consensus 196 ~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~ 260 (458)
.+++.+++.+.+ ++.+|+++.++...|.+.| ++++.++|++||+++|.|+++. +|..- .+.....
T Consensus 213 ~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~ 292 (464)
T PRK06938 213 ANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGII 292 (464)
T ss_pred HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCC
Confidence 135667777753 5789999999888898876 8899999999999999999976 33221 1122345
Q ss_pred CcEEEecccCCC-CCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 261 ADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 261 ~d~~~~s~~K~~-gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
+|+++ +.|.+ |...+|.++.+++. +.+.+...+ ...+.+....++..+.|+.+.+
T Consensus 293 PDiv~--~gKglggG~PlsAv~~~~~~-~~~~~~~~~---------------------~T~~gnpla~Aaa~a~L~~l~~ 348 (464)
T PRK06938 293 PDVVV--LSKAIGGSLPLAVVVYREWL-DTWQPGAHA---------------------GTFRGNQMAMAAGSATLRYIKE 348 (464)
T ss_pred CCEEE--eeccccCCCceEEEeehhHh-hccCCCCCC---------------------CCCCcCHHHHHHHHHHHHHHHH
Confidence 89999 57843 34448888888764 433221110 1123566667777777777765
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC------------C---hHHHHHHHhhhc
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI------------H---PTDIATLLDQQY 403 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~------------~---~~~~~~~l~~~~ 403 (458)
+.+.++.+++.++|.+.|+++. ...+.... ...|.++.+.+... + ...+...+.++
T Consensus 349 ---~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~V----rG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 420 (464)
T PRK06938 349 ---HRLAEHAAAMGERLREHLRQLQRDYPQLGDV----RGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRR- 420 (464)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhCCCeeee----eccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHC-
Confidence 3556677777777777776541 11111222 23356777776321 0 23466777777
Q ss_pred CeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 404 GVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 404 gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
|+.+.++.. ..+.+|+.+++..|++|+++++++++++++++
T Consensus 421 Gll~~~~g~----------~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 461 (464)
T PRK06938 421 GLILELGGR----------HGSVVRFLPPLIITAEQIDEVAEIFAEAVAAA 461 (464)
T ss_pred CeEEeecCC----------CCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 998864320 14689999998899999999999999999865
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-15 Score=150.10 Aligned_cols=339 Identities=13% Similarity=0.111 Sum_probs=210.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-CCCcE-EEeCC
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEI-VFTKN 137 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v-~~t~g 137 (458)
++--|+|.. ..|...+.+.+++.+.+...... + ... -..+...++-+.|++++... ....+ ++++|
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~-~-~~~----~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~s 110 (442)
T TIGR00709 37 EGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPL-H-TLD----LTTPLKDAFIEALLNIIPKRKMDYKLQFPGPS 110 (442)
T ss_pred CCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCc-c-ccc----cCcHHHHHHHHHHHHhCCCcCCCccEEEeCCC
Confidence 344566642 34567889999999888752211 0 100 11234445667777777532 11244 45689
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH----HcCC-----eEEEEeCCCCCCC--------CH--
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ----KTGA-----NLKFLNLNDDESP--------DL-- 198 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~----~~g~-----~~~~v~~~~~~~~--------d~-- 198 (458)
|++|++.+++..+ ....+.+|+....+||+.......+.. +.+. .+..++....... +.
T Consensus 111 GsEA~e~AlklAr--~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (442)
T TIGR00709 111 GADAVEAAIKLAK--TYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNA 188 (442)
T ss_pred HHHHHHHHHHHHH--HhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHH
Confidence 9999999998764 245567899999999988765554321 1111 1233333211110 11
Q ss_pred --HHHHHhhc------CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--CC--CCCCCC
Q 012718 199 --DKLKEMLS------RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VD--VQGLDA 261 (458)
Q Consensus 199 --~~l~~~l~------~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~~--~~~~~~ 261 (458)
+.+++.++ .++.+|+++.+++..|.+.+ +++|.++|++||+++|.|+++. +|... +. .....+
T Consensus 189 ~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~P 268 (442)
T TIGR00709 189 SIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEP 268 (442)
T ss_pred HHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCC
Confidence 12334442 35788888888888888765 8899999999999999999987 43221 11 123458
Q ss_pred cEEEecccCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh
Q 012718 262 DFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI 340 (458)
Q Consensus 262 d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 340 (458)
|+++ ++|.+|. ..+|+++.+++ ++.+.+... ....+.+....++..++|+.+.+.
T Consensus 269 Div~--~gK~l~~G~Pigav~~~~~-~~~~~~~~~---------------------~~T~~gnpla~aaa~a~L~~i~~~ 324 (442)
T TIGR00709 269 DFVV--MSKAVGGGLPLAVLLIAPE-FDAWQPAGH---------------------TGTFRGNQLAMVTGTEALNYWKDD 324 (442)
T ss_pred cEEE--EcccccCCcccEEEEEchH-HhccCCCcC---------------------CCCCCcCHHHHHHHHHHHHHHHhc
Confidence 9998 7895543 33899999887 443322111 012246666677777788777653
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC---------------ChHHHHHHHhhhcC
Q 012718 341 GMQKIHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI---------------HPTDIATLLDQQYG 404 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~---------------~~~~~~~~l~~~~g 404 (458)
.+.++.+++.++|.+.|+++. ...+.... ...|.++.+.+... ....+...+.++ |
T Consensus 325 ---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v----rG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G 396 (442)
T TIGR00709 325 ---NLAQNAQERGERITSFLDDMIKEHPCIGNV----RGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFEN-G 396 (442)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhCCCeeee----eccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHC-C
Confidence 455677777777777776531 11111221 23366777766321 023566667777 9
Q ss_pred eEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 405 VATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 405 i~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+.+.+.... .+.+|+.+++..|++|+++++++++++++++
T Consensus 397 vl~~~~~~~----------~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 436 (442)
T TIGR00709 397 LLLETGGRE----------GEVFRLLCPITIDQEECEEGISRFKQAVEEA 436 (442)
T ss_pred eEEeecCCC----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 988643211 4689999999999999999999999999875
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8e-16 Score=151.74 Aligned_cols=337 Identities=12% Similarity=0.114 Sum_probs=211.9
Q ss_pred CeEEecCCC-----CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 67 KLVYLDNAA-----TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 67 ~~i~l~~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
+--|+|..+ .|...+.+.+++.+.+.++.... ... ..+...++.+.|+++++... +.+.|++||++|
T Consensus 71 G~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~---~~~----~~~~~~~lae~L~~~~p~~~-~~v~f~~sGseA 142 (459)
T PRK06082 71 GKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSP---RRF----TNETAIECAEKLTEIAGGEL-NRVLFAPGGTSA 142 (459)
T ss_pred CCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCcc---Ccc----CCHHHHHHHHHHHHhCCCCC-CEEEECCCcHHH
Confidence 445666432 35577889999999887643211 000 12444567788888876332 389999999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH----cC-----CeEEEEeCCCC----C-CC------CHHHH
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----TG-----ANLKFLNLNDD----E-SP------DLDKL 201 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~----~g-----~~~~~v~~~~~----~-~~------d~~~l 201 (458)
++.++...+ ....+.+|+....+||+.......+... .+ -.+..+|.... + .. +++.+
T Consensus 143 ve~AlklAr--~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (459)
T PRK06082 143 IGMALKLAR--HITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYL 220 (459)
T ss_pred HHHHHHHHH--HhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHH
Confidence 999998663 2345578999999999875433322110 00 01233332111 0 00 13457
Q ss_pred HHhhc--CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCcEEEecccCC
Q 012718 202 KEMLS--RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADFLVASSHKM 271 (458)
Q Consensus 202 ~~~l~--~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d~~~~s~~K~ 271 (458)
++.++ +++.+|+++.+++..+.+.| +++|.++|++||+++|+|+++. +|..- + ......+|+++ ++|.
T Consensus 221 ~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKg 298 (459)
T PRK06082 221 EYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKG 298 (459)
T ss_pred HHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEE--eccc
Confidence 77765 36789999988876433445 8999999999999999999987 32221 1 11233589988 7995
Q ss_pred CCCC--ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 012718 272 CGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349 (458)
Q Consensus 272 ~gp~--g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 349 (458)
+|.. .+|.++.++++......... . + +...++...++..++|+.+.+. .+.++.
T Consensus 299 l~gG~~P~~av~~~~~i~~~~~~~~~-------------------~-~-T~~gnpl~~aaa~a~L~~l~~~---~l~~~~ 354 (459)
T PRK06082 299 LGGGLVPIAAMITKDKYNTAAQISLG-------------------H-Y-THEKSPLGCAAALATIEVIEQE---GLLEKV 354 (459)
T ss_pred ccCCCCcceEEEEcHHHHhhccCCCC-------------------C-C-CCCcCHHHHHHHHHHHHHHHhc---CHHHHH
Confidence 5432 38888888875432210000 0 1 2235666667777778877653 466777
Q ss_pred HHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC------C---hHHHHHHHhhhcCeEeccCCCCChhhHh
Q 012718 350 MELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI------H---PTDIATLLDQQYGVATRSGHHCAQPLHR 419 (458)
Q Consensus 350 ~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~------~---~~~~~~~l~~~~gi~~~~g~~~~~~~~~ 419 (458)
.++.++|.+.|+++. ...+.... ...|.++.+.+... . ...+...+.++ |+.+.+..
T Consensus 355 ~~~g~~l~~~L~~l~~~~~~i~~v----rG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~-------- 421 (459)
T PRK06082 355 KADSQFMRERLLEMKAKYPLIGDV----RGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNN-GLSFKVSQ-------- 421 (459)
T ss_pred HHHHHHHHHHHHHHHhhCCCeeee----eeccceeEEEEccCccccCccHHHHHHHHHHHHhC-CCEEEecC--------
Confidence 777888777776541 11111121 23366777776421 1 23566677777 99886421
Q ss_pred hcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 420 YLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 420 ~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.+|+++.+..|++||++++++++++++++.+
T Consensus 422 ----~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 454 (459)
T PRK06082 422 ----GNVIQLSPPLIITREELTQALAILEEAIAKICQ 454 (459)
T ss_pred ----CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhh
Confidence 468999999889999999999999999987643
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=155.83 Aligned_cols=321 Identities=14% Similarity=0.114 Sum_probs=202.5
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.|..++.+.+++.+.+.... ..+ ...+...++.+.|++.+.. . +.++|++||++|+..++.... ...
T Consensus 64 lGh~~p~i~~a~~~~~~~~~---~~~------~~~~~~~~la~~L~~~~~~-~-~~v~~~~sGseA~e~Aik~a~--~~~ 130 (426)
T PRK00062 64 LGHAHPEVVEAVIEAAEKGL---SFG------APTELEVELAELVIELVPS-I-EMVRMVNSGTEATMSAIRLAR--GYT 130 (426)
T ss_pred cCCCCHHHHHHHHHHHHhCC---cCC------CCCHHHHHHHHHHHHhCCC-C-CEEEEecCHHHHHHHHHHHHH--HHh
Confidence 35678899999999987621 111 1133445677888877632 2 389999999999999998753 234
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHH----cC-----CeEEEEeCC--CCCCCCHHHHHHhhcC---CceEEEEecccCcC
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQK----TG-----ANLKFLNLN--DDESPDLDKLKEMLSR---KTKLVVIHHISNML 221 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~----~g-----~~~~~v~~~--~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~t 221 (458)
.+++|+..++.||+........... .+ ...+.++.. ..-..|++.+++.+.. ++++|+++.+...+
T Consensus 131 g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~ 210 (426)
T PRK00062 131 GRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNM 210 (426)
T ss_pred CCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCC
Confidence 5678999999999875333222100 01 000000000 0001278888888753 67899999888889
Q ss_pred ccccc----HHHHHHHHHhcCcEEEEeccccCCccc----CCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCC
Q 012718 222 ASILP----IEEIVHWSHDVGAKVLVDACQSVPHMV----VDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPP 292 (458)
Q Consensus 222 G~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~~----~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~ 292 (458)
|.+.| +++|.++|++||+++|+|++|...... .+.....+|+ .+++|.++ ...+|+++.++++++.+..
T Consensus 211 G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi--~~~gK~l~~G~p~ga~~~~~~i~~~~~~ 288 (426)
T PRK00062 211 GVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDL--TTLGKIIGGGLPVGAFGGRREIMEQLAP 288 (426)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcch--HhhhhHhhCCCcceeeeEHHHHHHhhcc
Confidence 99998 899999999999999999999721110 1111223675 46889555 2237888998887776642
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh----cCCCEEE
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL----SIPNIRI 368 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~----~~~~~~~ 368 (458)
... . ..+...+.+....+++.++|+.+.+. .+.++.+++.+++.+.|+ +. ++..
T Consensus 289 ~~~--~----------------~~~~T~~~~p~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 346 (426)
T PRK00062 289 LGP--V----------------YQAGTLSGNPLAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKEAAKKA-GIPL 346 (426)
T ss_pred CCC--c----------------eecccCcCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHc-CCce
Confidence 100 0 00112235566667777778877653 455566666666666654 33 2221
Q ss_pred eCCCCCCcCccccEEEEEeCCC-----------C---hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC
Q 012718 369 YGPKPSEHVQRAALCSFNVENI-----------H---PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY 434 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~~-----------~---~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~ 434 (458)
.. ...+.++.+.+... + ...+...+.++ ||.+.+.. .+.+++++ .
T Consensus 347 ~v------rg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-Gv~v~~~~------------~~~~~~~~--~ 405 (426)
T PRK00062 347 TV------NRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDE-GVYLAPSQ------------FEAGFVSA--A 405 (426)
T ss_pred EE------EEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHC-CeEeecCC------------cCceeeec--c
Confidence 11 12266776665421 1 24678888888 99986532 23567664 4
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 012718 435 NTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 435 ~t~~di~~l~~~l~~~~~~~ 454 (458)
++++||+++++.|+++++++
T Consensus 406 ~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 406 HTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 79999999999999998764
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-16 Score=155.17 Aligned_cols=346 Identities=12% Similarity=0.088 Sum_probs=212.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|.-.+.+.+++.+.+.........+ . -..+...++-+.|++.+...- +.+.|++||+
T Consensus 49 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~-~----~~~~~~~~lae~L~~~~p~~~-~~v~f~~sGs 122 (466)
T PRK07036 49 DGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFG-D----MTNAPAAELAAKLAELAPGDL-NHVFLTTGGS 122 (466)
T ss_pred CCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCccccccc-c----cCCHHHHHHHHHHHHhCCCCc-CEEEEeCCch
Confidence 344566653 245677889999998887632111000 0 012333456666777764332 3899999999
Q ss_pred HHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHHc----C-----CeEEEEeCCCC-----CC------
Q 012718 140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQKT----G-----ANLKFLNLNDD-----ES------ 195 (458)
Q Consensus 140 ~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~~----g-----~~~~~v~~~~~-----~~------ 195 (458)
+|++.+++..+.. ....+.+|+....+||+.......+.... + ..+..++.... +.
T Consensus 123 eAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 202 (466)
T PRK07036 123 TAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFC 202 (466)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHH
Confidence 9999999865311 01224689999999998764433321110 0 11333332210 10
Q ss_pred -CCHHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--CCC---CCCC
Q 012718 196 -PDLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDV---QGLD 260 (458)
Q Consensus 196 -~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~~~---~~~~ 260 (458)
..++.+++.+. +++.+|+++.++...|.+.| +++|.++|++||+++|+|+++. +|..- +.. ....
T Consensus 203 ~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~ 282 (466)
T PRK07036 203 DFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQ 282 (466)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCC
Confidence 01233455543 36789999999999999887 9999999999999999999984 54421 222 2345
Q ss_pred CcEEEecccCCCC-CC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH
Q 012718 261 ADFLVASSHKMCG-PT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS 338 (458)
Q Consensus 261 ~d~~~~s~~K~~g-p~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 338 (458)
+|+++ ++|.+| +. .+|.+++++++.+.+.+....+.. +. ... +-+.++...++..++|+.+.
T Consensus 283 PDivt--~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~----~~---------~~~-T~~gnpl~~aaa~a~Le~i~ 346 (466)
T PRK07036 283 PDIIT--FAKGLTSGYQPLGAVIISERLLDVISGPNAKGNV----FT---------HGF-TYSGHPVACAAALKNIEIME 346 (466)
T ss_pred CCEEE--EccccccCccccEEEEEcHHHHHHHhcccCcCcc----cc---------cCC-CCCCCHHHHHHHHHHHHHHH
Confidence 89887 689544 32 489999998877655421000000 00 000 11356666777777787776
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC------------hHHHHHHHhhhcCeE
Q 012718 339 TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH------------PTDIATLLDQQYGVA 406 (458)
Q Consensus 339 ~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~l~~~~gi~ 406 (458)
+. .+.++.+++.++|.+.|+.+....+.... ...|.++.+.+.... ...+...+.++ |+.
T Consensus 347 ~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~v----rG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl 418 (466)
T PRK07036 347 RE---GLCEHVREVGPYFEERLASLRELPLVGDV----RGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQER-GLL 418 (466)
T ss_pred hC---CHHHHHHHHHHHHHHHHHHhccCCCEEEE----EeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHC-CcE
Confidence 53 46667777777777777654211111111 233557777663210 23566777788 998
Q ss_pred eccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 407 TRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 407 ~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+.+. .+.+|+++.+..|++|||+++++++++++++
T Consensus 419 ~~~~-------------~~~~~l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 419 VRPL-------------EHLCVLSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred Eeec-------------CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 8642 2478999998889999999999999998766
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=151.68 Aligned_cols=345 Identities=19% Similarity=0.203 Sum_probs=195.9
Q ss_pred EEecCCCCCCCcHHHHHH-HHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKA-LQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
.|+..|+..-.-+++.+. +.+.-+.+-.+ +......+.+.-+.+-+.+..++++.|.+-. +.-+..++|.+-+.++.
T Consensus 68 ~fiG~G~y~~~~P~~i~~~i~~~~ef~TaY-tPYQpEisQG~Lq~lfe~Qs~i~eLTGmdva-NaSlyd~atA~aEa~~m 145 (429)
T PF02347_consen 68 SFIGAGSYTHYVPAVIDRNILSRPEFYTAY-TPYQPEISQGRLQALFEYQSMICELTGMDVA-NASLYDGATAAAEAMLM 145 (429)
T ss_dssp S---CTTT-----HHHHH-HHCCHHCCCS--STTSGGGBHHHHHHHHHHHHHHHHHHTSSEE--SEBSSCCHHHHHHHHH
T ss_pred ccccccccCceeChhhcCccccChhhhccC-CCCCcHHHHHHHHHHHHHHHHHHHhhCCCcc-CCCCCChhHHHHHHHHH
Confidence 345555555334444444 44433322111 1112233456677788899999999999843 34566788887777777
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
+.+. .-+++++|+++...|+.........+...|++++.++.++++..| ++++..|++.+| |..|.+.++
T Consensus 146 a~r~-~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~~~~a~v~vq~P-n~~G~~ed~ 215 (429)
T PF02347_consen 146 AVRA-TKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------DDDTAAVMVQNP-NTFGVFEDI 215 (429)
T ss_dssp HHHH-HTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------STTEEEEEEESS--TTSB--TH
T ss_pred HHHh-cccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------ccCeEEEEeecC-CCCceEeeH
Confidence 6532 122346999999999998877788888889999999988777766 678999999999 579999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCccc-CCCCCCCCcEEEecccCC------CCCCceeEEEEeccccccCCCccccCcce
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMV-VDVQGLDADFLVASSHKM------CGPTGIGFLFGKSDLLSAMPPFLGGGEMI 300 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~-~~~~~~~~d~~~~s~~K~------~gp~g~G~l~~~~~~~~~l~~~~~g~~~~ 300 (458)
++|.+++|++|.++++ ++.-....- -...++|+|+++++ ||. ||++++|++.+++++++.++..+.|-..-
T Consensus 216 ~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D 293 (429)
T PF02347_consen 216 KEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKD 293 (429)
T ss_dssp HHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEB
T ss_pred HHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceeccccc
Confidence 9999999999999987 665432221 23457889999887 663 34455999999999988888544432210
Q ss_pred E----eeecCCCCCCCCCCccCCCCCCH-----HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 301 S----DVFLDHSTFADPPSRFEAGTPAI-----GEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 301 ~----~~~~~~~~~~~~~~~~~~gt~~~-----~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
. ...+....-.. ..|-+..|.|+ ........-+.++...|+.++.+++..++.++.+.|++..+..+..+
T Consensus 294 ~~G~~~~~ltLqtREQ-HIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~ 372 (429)
T PF02347_consen 294 ADGKRAFVLTLQTREQ-HIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNP 372 (429)
T ss_dssp CCCSCCEEEE-GGGTC-HHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSS
T ss_pred ccccceeeeccccccc-cccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 0 00000000011 11222333333 33334455667788889999999999999999999998734432211
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
. .--++...... ..+.+ +.++ ++.-.-+. .+-..+.+-+++.--+|.+|||++++.+
T Consensus 373 ~------f~e~v~~~~~~---~~~~~-l~~~-~~~~gl~~--------~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 373 F------FFEFVVVFSKD---KEVEE-LLKR-GIEGGLNL--------RYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp S------BSSEEEEESS----HHHHH-HHHT-T----EEE--------GGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred C------ceeeeeecCCc---HHHHH-HHHH-HHhcCCCc--------cccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 1 11234333332 23322 4444 43321000 0111458889999889999999999864
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.5e-16 Score=151.25 Aligned_cols=344 Identities=10% Similarity=0.029 Sum_probs=210.6
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC----CCCcEEEe
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS----DSGEIVFT 135 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~----~~~~v~~t 135 (458)
++--|+|.. ..|...+.+.+++.+.++++......+ . ..+...++-+.|++.+... .-+.+.|+
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~--~----~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~ 135 (472)
T PRK08742 62 DGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAG--F----THEPAVQLAEQLLAIAPRQDGRAPLSKVFYA 135 (472)
T ss_pred CCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccc--c----CCHHHHHHHHHHHHhCCCcccCCCCCEEEEe
Confidence 344566643 345677889999998877542211101 1 1222345667777776431 11389999
Q ss_pred CChhHHHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHHHc----C-----CeEEEEeCCCCC-----C--
Q 012718 136 KNATEAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQKT----G-----ANLKFLNLNDDE-----S-- 195 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~~~----g-----~~~~~v~~~~~~-----~-- 195 (458)
+||++|++.+++..+... -..+.+|+....+||+.......+.... + ..+..+|..... .
T Consensus 136 ~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~ 215 (472)
T PRK08742 136 DNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSA 215 (472)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCH
Confidence 999999999998763210 0224689999999998765433321100 0 012333322110 0
Q ss_pred -----CCHHHHHHhhc---CCceEEEEec-ccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCC
Q 012718 196 -----PDLDKLKEMLS---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQ 257 (458)
Q Consensus 196 -----~d~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~ 257 (458)
.+++.+++.+. +++.+|+++. +++..|.+.| ++.+.++|+++|+++|.|+++. +|... .+..
T Consensus 216 ~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~ 295 (472)
T PRK08742 216 EDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQA 295 (472)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhc
Confidence 12456666664 4678899988 5788888776 8899999999999999999976 44321 1122
Q ss_pred CCCCcEEEecccCCC-CCC-ceeEEEEeccccccCCCcc-ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHH
Q 012718 258 GLDADFLVASSHKMC-GPT-GIGFLFGKSDLLSAMPPFL-GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAI 334 (458)
Q Consensus 258 ~~~~d~~~~s~~K~~-gp~-g~G~l~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 334 (458)
...+|+++ +.|.+ |+. .+|.+++++++.+.+.... .+... . ..+-+.++...++..++|
T Consensus 296 gv~PDiv~--~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~---------------h-~~T~~gnpl~~Aaa~a~L 357 (472)
T PRK08742 296 GVMPDLLC--LSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFL---------------H-SHSYTGNPLACAAALATL 357 (472)
T ss_pred CCCCCEEE--EcccccCCCCCcceeeccHHHHHHhhccCccCccC---------------c-CCCCCccHHHHHHHHHHH
Confidence 34599999 58944 442 4899999988765543110 00000 0 001235666777777888
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC--C-----C-----hHHHHHHHhhh
Q 012718 335 DYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN--I-----H-----PTDIATLLDQQ 402 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-----~-----~~~~~~~l~~~ 402 (458)
+.+.+.+ +.++.+++.++|.+.++.+....+.... ...|.++.+.+.. . . ...+.+.+.++
T Consensus 358 ~~i~~~~---l~~~~~~~g~~l~~~~~~~~~~~~i~dv----RG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (472)
T PRK08742 358 DIFADDD---VIARNQPTAARMTQLAAQIGEHPHVADV----RQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALAR 430 (472)
T ss_pred HHHHHCC---HHHHHHHHHHHHHHHHHHHhcCCCeeeE----eccceEEEEEeccCccccccCCchhHHHHHHHHHHHHC
Confidence 8887754 4455555555555544432111111121 2335677776631 1 0 13466777778
Q ss_pred cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 403 YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 403 ~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
|+.+.+. .+.+|+.+++..|++||++++++|+++++++
T Consensus 431 -Gll~~~~-------------g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 431 -GVVLRPL-------------GDVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred -CeEEEec-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998642 2589999999999999999999999999865
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-16 Score=154.64 Aligned_cols=346 Identities=12% Similarity=0.084 Sum_probs=210.9
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+....... ... ..+...++-+.|+++++-...+.+.|++||+
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~-~~~----~~~~~~~lae~L~~~~~~~~~~~v~f~~sGs 114 (449)
T PRK07481 40 DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTF-DGT----THPRAIELSYELIDMFAPEGMRRVFFSSGGS 114 (449)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecc-ccc----CCHHHHHHHHHHHHhcCCCCCCEEEEcCchH
Confidence 344566652 34567788999999988764221100 000 1233345667777777422223899999999
Q ss_pred HHHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHHHc------C---CeEEEEeCCCC-----CCCCHHH-
Q 012718 140 EAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQKT------G---ANLKFLNLNDD-----ESPDLDK- 200 (458)
Q Consensus 140 ~a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~~~------g---~~~~~v~~~~~-----~~~d~~~- 200 (458)
+|++.+++..+... ...+.+|+....+||+.......+.... + ..+..++.+.. +..|++.
T Consensus 115 EAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~ 194 (449)
T PRK07481 115 DSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEEL 194 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHH
Confidence 99999998653210 0134689999999998654333221100 0 11222322210 0013333
Q ss_pred -------HHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCC
Q 012718 201 -------LKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLD 260 (458)
Q Consensus 201 -------l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~ 260 (458)
+++.+. +++.+|+++.++...|.+.| ++++.++|+++|+++|.|+++. +|.. ........
T Consensus 195 ~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~ 274 (449)
T PRK07481 195 ARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVK 274 (449)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCC
Confidence 344442 46799999999998998876 8999999999999999999976 4322 11222345
Q ss_pred CcEEEecccCCCC-CC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCC--CCCHHHHHHHHHHHHH
Q 012718 261 ADFLVASSHKMCG-PT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG--TPAIGEAIGLGAAIDY 336 (458)
Q Consensus 261 ~d~~~~s~~K~~g-p~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~~l~~al~~ 336 (458)
+|+++ +.|.+| +. .+|.+++++++.+.+.+...... .....+ +.++...++..++|+.
T Consensus 275 PDiv~--~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~----------------~~~h~~T~~gnpl~~aaa~a~L~~ 336 (449)
T PRK07481 275 PDIMC--LAKGITSGYVPLGATMVNARIADAFEANADFGG----------------AIMHGYTYSGHPVACAAALATLDI 336 (449)
T ss_pred CCEEE--EeecccCCCcCceEEEEcHHHHHHHhccCcccc----------------ccccCCCCCCCHHHHHHHHHHHHH
Confidence 89988 589444 32 48999999887665542110000 001112 2456666666677777
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC-------C-----hHHHHHHHhhhc
Q 012718 337 LSTIGMQKIHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI-------H-----PTDIATLLDQQY 403 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~-------~-----~~~~~~~l~~~~ 403 (458)
+.+ +.+.++.+++.++|.+.|+++. ...+.... ...|.++.+.+... + ...+.+.+.++
T Consensus 337 l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v----rG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 408 (449)
T PRK07481 337 VVR---EDLPANAAKRGAYLLEGLQPLKERFELVGDV----RGKGLMLALDLVADKATREPIDPSKGYANAVADVAREN- 408 (449)
T ss_pred HHh---hhHHHHHHHHHHHHHHHHHHHhhcCCCeEEE----eecceEEEEEecccccccCCCCchhHHHHHHHHHHHhC-
Confidence 765 4566677777777777776541 11111111 22355676766311 1 23566677777
Q ss_pred CeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 404 GVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 404 gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
|+.+.+. ...+|+++.+..|++|||++++.++++++++.
T Consensus 409 Gvl~~~~-------------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 409 GVLVRPS-------------GTKIILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred CeEEEec-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9998643 23689999988899999999999999998754
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-16 Score=151.24 Aligned_cols=327 Identities=15% Similarity=0.113 Sum_probs=206.4
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+.... +. ..+...++-+.|++.++. +.+.|++|||
T Consensus 73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~---~~------~~~~~~~lAe~l~~~~~~---~~v~F~nSGt 140 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTT---ML------PSEDAAWVGEELARRFGL---PYWQVATTAT 140 (453)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCCC---CC------CCHHHHHHHHHHHHHhCC---CEEEEECCHH
Confidence 344566642 23456689999999988753211 11 123334566677777653 3899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH---------HcCC------eEEEEeCCCCCCCCHHHHHHh
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ---------KTGA------NLKFLNLNDDESPDLDKLKEM 204 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~---------~~g~------~~~~v~~~~~~~~d~~~l~~~ 204 (458)
+|+..+++..+ ....+++|+....+||+.......... ..|. .+..++. -|++.+++.
T Consensus 141 EA~e~AlrlAR--~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~ 213 (453)
T PRK07046 141 DANRFVLRWAR--AVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-----NDLAALEAA 213 (453)
T ss_pred HHHHHHHHHHH--HhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-----CCHHHHHHH
Confidence 99999998764 345677899999999986432221110 0010 1111221 188999988
Q ss_pred hc-CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc----CCcccCCCCCCCCcEEEecccCC-CCC
Q 012718 205 LS-RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS----VPHMVVDVQGLDADFLVASSHKM-CGP 274 (458)
Q Consensus 205 l~-~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~----~g~~~~~~~~~~~d~~~~s~~K~-~gp 274 (458)
+. .++.+|+++......|.+.| ++++.++|+++|+++|.|+++. .|.. .......+|+++ +.|. .|+
T Consensus 214 l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~-~~~~gv~PDi~t--~gK~lggG 290 (453)
T PRK07046 214 LADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGY-TRAHGLEPDFLV--VGKPIAGG 290 (453)
T ss_pred hCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcch-hHHhCCCcccee--ehhhhcCC
Confidence 85 46789999999988898887 8999999999999999999985 3322 111234589987 7894 444
Q ss_pred CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCC--CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 012718 275 TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG--TPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 275 ~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l 352 (458)
..+|.+.+++++.+.+.+....... ...+..+ ..++...++..++|+.+.+. .+.++.+++
T Consensus 291 ~Pi~av~g~~~i~~~~~~~~~~~~~--------------~~~~~~~T~~gnpl~~aa~~a~L~~l~~~---~~~~~~~~~ 353 (453)
T PRK07046 291 VPCAVYGFSAELAERAQAAKASAPP--------------GHSGIGTTLSANALAMAAMRATLAEVMTE---AAYAHMLAL 353 (453)
T ss_pred CcceeeeehHHHHHHHhhccccCCC--------------CCceeCCCCcccHHHHHHHHHHHHHHhcc---cHHHHHHHH
Confidence 4589999999887665421100000 0001122 34666667777777777553 345666666
Q ss_pred HHHHHHHHhc----CC-CEEEeCCCCCCcCccccEEEEEeCC--C----------C---hHHHHHHHhhhcCeEeccCCC
Q 012718 353 AKYLYENLLS----IP-NIRIYGPKPSEHVQRAALCSFNVEN--I----------H---PTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 353 ~~~l~~~L~~----~~-~~~~~~~~~~~~~~~~~~v~~~~~~--~----------~---~~~~~~~l~~~~gi~~~~g~~ 412 (458)
.++|.+.|++ .+ ...+.+. +.++.+.+.. . + ...+...+.++ ||.+.+.
T Consensus 354 g~~l~~~L~~l~~~~~~~~~v~g~--------G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~~-- 422 (453)
T PRK07046 354 AARLAAGLRAVIARHGLPWHVTRV--------GARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNR-GVLITPF-- 422 (453)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEe--------CcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHC-CCEEecc--
Confidence 6666666653 31 1222222 3344444321 0 1 12455667777 9988642
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.+.+++++. ++++|||+++++++++++++.
T Consensus 423 -----------~~~~~~~p~--~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 423 -----------HNMMLVCPA--TTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred -----------cCcEEEeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence 235788876 799999999999999998753
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-16 Score=153.78 Aligned_cols=333 Identities=10% Similarity=0.029 Sum_probs=207.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC--
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS-- 152 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~-- 152 (458)
..|...+.+.+++.+.+.+...... . .. ......++-+.|+++++..- +.+.|+++|++|++.+++.....
T Consensus 58 ~lGh~~p~v~~ai~~~~~~~~~~~~-~-~~----~~~~~~~la~~l~~~~~~~~-~~v~f~~sGseA~e~AlklAr~~~~ 130 (427)
T TIGR00508 58 IHGYNHPRLNAAAQKQIDKMSHVMF-G-GF----THKPAIELCQKLVKMTPNAL-DCVFLADSGSVAVEVALKMALQYWQ 130 (427)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCccc-c-cc----CCHHHHHHHHHHHhhCCCCC-CEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 3456778899999998876422111 0 00 11223456667777765332 38999999999999998864311
Q ss_pred --CCCCCCEEEEcCCCCccchHHHHHHHHH-------cC-C--eEEEEeCCCC-C-----CCCHHHHHHhhc---CCceE
Q 012718 153 --NLKSGDEVILTVAEHHSAIVPWQLVAQK-------TG-A--NLKFLNLNDD-E-----SPDLDKLKEMLS---RKTKL 211 (458)
Q Consensus 153 --~~~~g~~vl~~~~~~~s~~~~~~~~a~~-------~g-~--~~~~v~~~~~-~-----~~d~~~l~~~l~---~~~~~ 211 (458)
....+.+|+....+||+.......+... .+ . .+..++.... . ..|++++++.+. +++++
T Consensus 131 ~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaa 210 (427)
T TIGR00508 131 AKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAA 210 (427)
T ss_pred hhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEE
Confidence 0012468999999999876443332110 00 0 1112221111 0 114566777764 35688
Q ss_pred EEEecc-cCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecccCCCC-C-CceeE
Q 012718 212 VVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCG-P-TGIGF 279 (458)
Q Consensus 212 v~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~g-p-~g~G~ 279 (458)
|+++.+ +...|...+ +++|.++|++||+++|+|++|. +|... .......+|+++ ++|.++ + ..++.
T Consensus 211 vivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~gG~~p~~a 288 (427)
T TIGR00508 211 VILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILC--VGKALTGGYMTLSA 288 (427)
T ss_pred EEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEE--echhhhcCcccceE
Confidence 888886 777776554 8899999999999999999984 32211 112234588887 799543 3 13688
Q ss_pred EEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 280 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++.++++.+.+.....+... ....-..++...++..++++.+.+. .+.++.+++.++|.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~----------------~~~T~~g~p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~ 349 (427)
T TIGR00508 289 TVTTDKVAQTISSGEAGCFM----------------HGPTFMGNPLACAVAEASLAILLEG---EWQKQVSAIENQLKRE 349 (427)
T ss_pred EEEcHHHHHHHhcCCCCccc----------------cCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 88888776655421100000 0001124566677777788877663 3467888888888888
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
|+++......... ...+.++.+.+.+ .....+.+.+.++ ||.+.+. ...+|++++..+|++
T Consensus 350 L~~l~~~~~i~~v----rg~G~~~~i~~~~~~~~~~~~~~l~~~-Gv~~~~~-------------~~~l~~~ppl~~t~~ 411 (427)
T TIGR00508 350 LSPLRKNPVVKDV----RVLGAIGVVEMYKPVNVEELQKKFVEQ-GVWIRPF-------------GKLIYVMPPYIITTE 411 (427)
T ss_pred HHHhhcCCCEEeE----eccccEEEEEECCccCHHHHHHHHHHC-CeEEEec-------------CCEEEEECCCCCCHH
Confidence 8765211111111 2336677777753 2456788899988 9998642 247999999889999
Q ss_pred HHHHHHHHHHHHHHh
Q 012718 439 DVDEFIHALNETVSF 453 (458)
Q Consensus 439 di~~l~~~l~~~~~~ 453 (458)
|||++++++++++++
T Consensus 412 ~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 412 QLQKLTAALIEALHE 426 (427)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-16 Score=148.08 Aligned_cols=302 Identities=16% Similarity=0.122 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC--
Q 012718 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-- 190 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-- 190 (458)
+.++++.+++++|.+ .++.|++||.|++++.. + .+++||.| +...|..... ......|+...-+..
T Consensus 80 ~~~LE~~vAe~lG~e---~aV~v~sGTaAl~ll~~-l---~v~pGd~V--p~n~~f~Tt~---ahI~~~Ga~fvDi~~d~ 147 (460)
T PRK13237 80 FYHLEETVQEYYGFK---HVVPTHQGRGAENLLSR-I---AIKPGQYV--PGNMYFTTTR---YHQELNGGIFVDIIIDE 147 (460)
T ss_pred HHHHHHHHHHHHCCC---eEEEeCCHHHHHHHHHH-h---CCCCcCEE--CCccchHhhH---HHHHhCCcEEEeeeccc
Confidence 447789999999998 79999999999998644 4 37899965 5555554432 223455775544431
Q ss_pred --------CCCCCCCHHHHHHhhcCC----ceEEEEecccCcC-cccc---cHHHHHHHHHhcCcEEEEeccccCCcc--
Q 012718 191 --------NDDESPDLDKLKEMLSRK----TKLVVIHHISNML-ASIL---PIEEIVHWSHDVGAKVLVDACQSVPHM-- 252 (458)
Q Consensus 191 --------~~~~~~d~~~l~~~l~~~----~~~v~~~~~~n~t-G~~~---~l~~i~~l~~~~~~~vivD~a~~~g~~-- 252 (458)
..+|.+|++.+++.|+++ ++++.+..++|.. |... ++++|.++|++||+.+|+|+++.++..
T Consensus 148 a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~f 227 (460)
T PRK13237 148 AHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYF 227 (460)
T ss_pred ccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhh
Confidence 235889999999999763 4567777777877 6776 479999999999999999999998732
Q ss_pred ---------cCCCC------CCCCcEEEecccCC-CCCCceeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCC
Q 012718 253 ---------VVDVQ------GLDADFLVASSHKM-CGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPS 315 (458)
Q Consensus 253 ---------~~~~~------~~~~d~~~~s~~K~-~gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 315 (458)
..++. ....|.+++|++|. .++. .|+++.++ ++.++++....-+ .
T Consensus 228 I~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~-GG~i~t~D~eL~~~~r~~~~~~-----------------e 289 (460)
T PRK13237 228 IKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI-GGFLAMNDEELFDEAKELVVVY-----------------E 289 (460)
T ss_pred hcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC-ceEEEECCHHHHHHHHHhcccc-----------------C
Confidence 11111 01379999999994 4455 46777765 5555554331100 1
Q ss_pred ccC-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccE-EEEEe----CC
Q 012718 316 RFE-AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAAL-CSFNV----EN 389 (458)
Q Consensus 316 ~~~-~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-v~~~~----~~ 389 (458)
+|. .|..+--.+.+++.++....+ ..+.++..+..++|.+.|.+. |+.+..|. ++. +.+.. |.
T Consensus 290 G~~tygg~~grd~~alAvgl~E~~~---~~y~~~ri~~~~~l~~~L~~~-Gvpv~~p~-------ggH~v~vda~~~lph 358 (460)
T PRK13237 290 GMPSYGGMAGRDMEAMAIGIEESVQ---YEYIEHRVGQVRYLGEKLLAA-GVPIVEPV-------GGHAVFLDARRFLPH 358 (460)
T ss_pred CCcCCCChhhhHHHHHHhHHHhhch---HHHHHHHHHHHHHHHHHHHHC-CCceecCC-------CceEEEEEhHHhCCC
Confidence 111 233333345566555554433 255566667889999999887 99988775 343 33332 22
Q ss_pred -----CChHHHHHHHhhhcCeEec-cCCCCChh---hHhhcC-CCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhh
Q 012718 390 -----IHPTDIATLLDQQYGVATR-SGHHCAQP---LHRYLG-VNASARASLH-FYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 390 -----~~~~~~~~~l~~~~gi~~~-~g~~~~~~---~~~~~g-~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.....+...|....||-.. -|++.... ...... .-..+|+.++ -.-|.+.+|...++|..+.++-.
T Consensus 359 ~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~ 435 (460)
T PRK13237 359 LPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRE 435 (460)
T ss_pred CCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHh
Confidence 2455677777655587442 23321110 000000 0368999987 22377999999999999887543
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-15 Score=149.03 Aligned_cols=324 Identities=19% Similarity=0.196 Sum_probs=205.4
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+..... .+. ..+...++-+.|.+.+.. . +.+.|+++|+
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~---~~~------~~~~~~~la~~l~~~~p~-~-~~v~f~~sGs 119 (428)
T PRK12389 51 DGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVL---YGT------PTELEIEFAKMLKEAIPS-L-EKVRFVNSGT 119 (428)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc---cCC------CCHHHHHHHHHHHHhCCC-C-cEEEEeCCHH
Confidence 344566642 2445678899999998875321 111 122334566667666642 2 3899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH----------cCC------eEEEEeCCCCCCCCHHHHHH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----------TGA------NLKFLNLNDDESPDLDKLKE 203 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~----------~g~------~~~~v~~~~~~~~d~~~l~~ 203 (458)
+|++.+++..+ ....+.+|+....+||+........... .|. .+..++. .|++.+++
T Consensus 120 eA~e~AlklAr--~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~ 192 (428)
T PRK12389 120 EAVMTTIRVAR--AYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF-----NDIEALKE 192 (428)
T ss_pred HHHHHHHHHHH--HhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC-----CCHHHHHH
Confidence 99999998764 2455678999999999876544332110 010 1111111 17888888
Q ss_pred hhc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccCCcccC----CCCCCCCcEEEecccCCC
Q 012718 204 MLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHMVV----DVQGLDADFLVASSHKMC 272 (458)
Q Consensus 204 ~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~~~----~~~~~~~d~~~~s~~K~~ 272 (458)
.+. +++.+|+++.+.+..|.+.| +++|.++|+++|+++|+|+++....... ......+|+++ +.|.+
T Consensus 193 ~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt--~gK~l 270 (428)
T PRK12389 193 ALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLTA--LGKII 270 (428)
T ss_pred HHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCeee--echhh
Confidence 885 35789999999999999988 9999999999999999999987331111 11133589865 78944
Q ss_pred -CCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 012718 273 -GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEME 351 (458)
Q Consensus 273 -gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~ 351 (458)
|...+|.+++++++.+.+.+. +... ...+.+.|+...++..++|+.+.+. .+.++.++
T Consensus 271 ggG~Pi~av~~~~~i~~~~~~~--~~~~----------------~~~T~~gnpl~~Aaala~L~~l~~~---~l~~~~~~ 329 (428)
T PRK12389 271 GGGLPIGAYGGRKDIMEQVAPL--GPAY----------------QAGTMAGNPASMAAGIACLEVLQQE---GVYEKLDR 329 (428)
T ss_pred cCCCceeEEeEHHHHHhhhccC--CCcc----------------cccCCccCHHHHHHHHHHHHHHhcc---cHHHHHHH
Confidence 334478889998887666421 0000 0112235666677777778877653 46667777
Q ss_pred HHHHHHHHHhcC----CC-EEEeCCCCCCcCccccEEEEEeCC--C---------C---hHHHHHHHhhhcCeEeccCCC
Q 012718 352 LAKYLYENLLSI----PN-IRIYGPKPSEHVQRAALCSFNVEN--I---------H---PTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 352 l~~~l~~~L~~~----~~-~~~~~~~~~~~~~~~~~v~~~~~~--~---------~---~~~~~~~l~~~~gi~~~~g~~ 412 (458)
+.++|.+.|+++ +. ..+... .+++.+.+.. . + ...+.+.+.++ ||.+.+..
T Consensus 330 ~g~~l~~~L~~l~~~~~~~~~v~r~--------~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~- 399 (428)
T PRK12389 330 LGAMLEEGILEAAEKHGITITINRL--------KGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQ-GINLAPSK- 399 (428)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEec--------CcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHC-CcEeecCC-
Confidence 788877777653 21 111111 2244444321 1 1 24577778888 99987532
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.+.+. +...++++||+++++++++++++
T Consensus 400 -----------~~~~~--~~l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 400 -----------YEAWF--LTTAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred -----------CCCee--ecCCCCHHHHHHHHHHHHHHHHh
Confidence 12233 44558999999999999999865
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-15 Score=147.99 Aligned_cols=342 Identities=13% Similarity=0.058 Sum_probs=206.5
Q ss_pred CCeEEecC------CCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDN------AATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|. ...|...+.+.+++.+.+++..... .. . ....+...++.+.|+++++... +.++|+++|+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~---~~-~-~~~~~~~~~lae~L~~~~p~~~-~~v~f~~SGs 125 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYN---MF-F-HTTHPAVIELSELLFSLLPGHY-SHAIYTNSGS 125 (460)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCee---cc-c-ccCCHHHHHHHHHHHHhCCCCc-CEEEEeCCcH
Confidence 34456663 2345667889999999988642211 00 0 0113345567788888876432 3899999999
Q ss_pred HHHHHHHHHcCCCC---CCC-CCEEEEcCCCCccchHHHHHHHHHc-----C---CeEEEEeCCCC----CC--------
Q 012718 140 EAINLVAYSWGLSN---LKS-GDEVILTVAEHHSAIVPWQLVAQKT-----G---ANLKFLNLNDD----ES-------- 195 (458)
Q Consensus 140 ~a~~~~~~~l~~~~---~~~-g~~vl~~~~~~~s~~~~~~~~a~~~-----g---~~~~~v~~~~~----~~-------- 195 (458)
+|++.+++..+... -++ ..+|+....+||+.......+.... + -.+..+|...- ..
T Consensus 126 eA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 205 (460)
T PRK12403 126 EANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGR 205 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHH
Confidence 99999998774210 012 2356666778887654332221100 0 01233332110 00
Q ss_pred CCHHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCc
Q 012718 196 PDLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDAD 262 (458)
Q Consensus 196 ~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d 262 (458)
.+++++++.+. +++.+|+++.++...|.+.| ++.|.++|++||+++|+|+++. +|..- + +.....+|
T Consensus 206 ~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PD 285 (460)
T PRK12403 206 RAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPD 285 (460)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCC
Confidence 01345555552 35788999999999999888 9999999999999999999995 33221 1 11233489
Q ss_pred EEEecccCCCC-CC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCC--CCCHHHHHHHHHHHHHHH
Q 012718 263 FLVASSHKMCG-PT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG--TPAIGEAIGLGAAIDYLS 338 (458)
Q Consensus 263 ~~~~s~~K~~g-p~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~~l~~al~~~~ 338 (458)
+++ ++|.+| +. .+|.+++++++.+.+... .+ . .+..+ +.++...++..++|+.+.
T Consensus 286 iv~--~gK~lggG~~Piga~v~~~~i~~~~~~~-~~-~-----------------~~~~~T~~gnPl~~Aaala~L~~i~ 344 (460)
T PRK12403 286 TLS--IAKGLTSGYVPMGGLVLSKRIAEALVEQ-GG-V-----------------FAHGLTYSGHPVAAAVAIANLKALR 344 (460)
T ss_pred eEE--EcccccccccceEEEEECHHHHHHHhcC-CC-c-----------------cccCCCCCCCHHHHHHHHHHHHHHH
Confidence 997 889544 43 478888888776554321 00 0 00112 366777777778888887
Q ss_pred HhCHHHHHHHHH-HHHHHHHHHHhcC-CCEEEeCCCCCCcCccccEEEEEeCCC-------C-----hHHHHHHHhhhcC
Q 012718 339 TIGMQKIHAYEM-ELAKYLYENLLSI-PNIRIYGPKPSEHVQRAALCSFNVENI-------H-----PTDIATLLDQQYG 404 (458)
Q Consensus 339 ~~g~~~~~~~~~-~l~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~-----~~~~~~~l~~~~g 404 (458)
+.+ +.++.+ ++.++|.+.|+++ ....+.... ...|.++.+.+... . ...+.+.+.++ |
T Consensus 345 ~~~---l~~~~~~~~g~~l~~~L~~l~~~~~~i~~v----rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G 416 (460)
T PRK12403 345 DEG---VVTRVKDDTGPYLQRCLREVFGDHPLVGEV----QGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEE-G 416 (460)
T ss_pred hcc---HHHHHHHHHHHHHHHHHHHHHhcCCCEEeE----eecceEEEEEEccCccccccccchhHHHHHHHHHHHhC-C
Confidence 643 455553 5566666655432 111111111 23356777766321 1 11234455677 9
Q ss_pred eEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 405 VATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 405 i~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.+.+. .+.+|+++.+..|++|++++++.++++++++.
T Consensus 417 ll~~~~-------------~~~~~l~Ppl~it~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 417 VIIRST-------------LGRMIMAPALVAGRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred EEEEec-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 988632 24689999988899999999999999998873
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-15 Score=148.43 Aligned_cols=322 Identities=15% Similarity=0.155 Sum_probs=200.7
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.|...+.+.+++.+.+.+... .+. ..+...++-+.|.+.++... +.+.|+++|++|++.+++..+ ...
T Consensus 67 lGh~~p~v~~ai~~q~~~~~~---~~~------~~~~~~~la~~L~~~~~~~~-~~v~f~~SGsEA~e~AiklAr--~~t 134 (433)
T PRK00615 67 HGHSHPKICDAIQQGAERGTS---YGL------TSEQEILFAEELFSYLGLED-HKIRFVSSGTEATMTAVRLAR--GIT 134 (433)
T ss_pred cCCCCHHHHHHHHHHHHhCCC---CCC------CCHHHHHHHHHHHHhCCCCc-CEEEEeCchHHHHHHHHHHHH--Hhh
Confidence 356789999999998875321 111 12334456667777775432 389999999999999998764 244
Q ss_pred CCCEEEEcCCCCccchHH-HHHHHHHcCC---eE-EEE--e-CCCC----CCCCHHHHHHhhc---CCceEEEEecccCc
Q 012718 156 SGDEVILTVAEHHSAIVP-WQLVAQKTGA---NL-KFL--N-LNDD----ESPDLDKLKEMLS---RKTKLVVIHHISNM 220 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~-~~~~a~~~g~---~~-~~v--~-~~~~----~~~d~~~l~~~l~---~~~~~v~~~~~~n~ 220 (458)
.+.+|+....+||+.... +..+. ..+- .. ... + .... ..-|++.+++.+. .++.+|+++.+...
T Consensus 135 gr~~ii~~~~~yHG~td~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~ 213 (433)
T PRK00615 135 GRSIIIKFLGCYHGHADTLLQGIS-FSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICAN 213 (433)
T ss_pred CCCEEEEEcCccCCCCcccCcccc-cCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 567899999999975411 11110 0000 00 000 0 0000 0126788888874 35689999999999
Q ss_pred Cccccc----HHHHHHHHHhcCcEEEEecccc-C--Ccc-cCCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCC
Q 012718 221 LASILP----IEEIVHWSHDVGAKVLVDACQS-V--PHM-VVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 221 tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~--g~~-~~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~ 291 (458)
.|...| +++|.++|++||+++|+|++|. + |.. -.......+|+++ ++|.+| ...+|++++++++++.+.
T Consensus 214 ~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv~PDi~~--~gK~lggG~p~~av~~~~~i~~~~~ 291 (433)
T PRK00615 214 MGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHVKPDITV--YGKILGGGLPAAAVVAHKSIMDHLA 291 (433)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCCCCCeEE--EcccccCCcceeeeeecHHHHhhhc
Confidence 999888 5699999999999999999994 2 111 0111233589876 799554 333899999998877664
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCC--CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---CCE
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGT--PAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI---PNI 366 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~---~~~ 366 (458)
+. + ..+..+| .++...++..++|+.+.+. .+.++.+++.++|.+.|++. .++
T Consensus 292 ~~--~------------------~~~~~~T~~g~p~~~aa~la~L~~i~~~---~~~~~~~~~g~~l~~~l~~~~~~~g~ 348 (433)
T PRK00615 292 PE--G------------------TIFQAGTLSGNPLAMAAGKASINLCREQ---GFYTQLSTLEQNFLSPIEEMIRSQGF 348 (433)
T ss_pred CC--C------------------CcccCCCCcccHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 21 0 0011223 4666777777888877653 34666666677765555432 122
Q ss_pred EEeCCCCCCcCccccEEEEEeCCCC--------------hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC
Q 012718 367 RIYGPKPSEHVQRAALCSFNVENIH--------------PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH 432 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~ 432 (458)
.+... +.+.++.+.+.... ...+.+.+.++ ||.+.+..+. . ..++
T Consensus 349 ~v~~~------r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~------------~--~~ls 407 (433)
T PRK00615 349 PVSLV------RYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSK-GVYLSPSPFE------------A--SFLS 407 (433)
T ss_pred CeEEE------eeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHC-CeeecCcccc------------c--ccee
Confidence 21111 12556666664211 22577778888 9998764311 1 1334
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 433 FYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 433 ~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
..+|++|||+++++++++++++-.
T Consensus 408 ~~ht~~did~~~~a~~~~~~~~~~ 431 (433)
T PRK00615 408 SAHSMENLDYAQNVLIDSLEKVFS 431 (433)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhc
Confidence 447999999999999999987644
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-15 Score=147.59 Aligned_cols=351 Identities=12% Similarity=0.053 Sum_probs=211.8
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|.. ..|...+.+.+++.+.+.+... .+.... ..+...++.+.|++.+.... +.+.|++||+
T Consensus 28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~-~~~~~~-----~~~~~~~lae~L~~~~p~~~-~~v~f~~sGs 100 (443)
T PRK07483 28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAY-AHTSFF-----TTEPAEALADRLVAAAPAGL-EHVYFVSGGS 100 (443)
T ss_pred CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccC-cccccc-----CCHHHHHHHHHHHHhCCCCC-CEEEEcCCcH
Confidence 344566643 3556788899999999876421 111111 12333456677777764322 3899999999
Q ss_pred HHHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHHH------cC---CeEEEEeCCCCCCC----------
Q 012718 140 EAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQK------TG---ANLKFLNLNDDESP---------- 196 (458)
Q Consensus 140 ~a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~~------~g---~~~~~v~~~~~~~~---------- 196 (458)
+|++.+++..+... -..+.+|+....+||+.......+... .+ ..+..++....+..
T Consensus 101 EAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (443)
T PRK07483 101 EAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAY 180 (443)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHH
Confidence 99999998653210 023467999999999876543332110 00 01223332211110
Q ss_pred ---CHHHHHHhhc----CCceEEEEecccC-cCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCC
Q 012718 197 ---DLDKLKEMLS----RKTKLVVIHHISN-MLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGL 259 (458)
Q Consensus 197 ---d~~~l~~~l~----~~~~~v~~~~~~n-~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~ 259 (458)
.++.+++.+. +++.+|+++.++. ..|.+.| ++.|.++|++||+++|.|+++. +|..- + .....
T Consensus 181 ~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv 260 (443)
T PRK07483 181 GQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGV 260 (443)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCC
Confidence 1245666553 4678999998876 3577766 8999999999999999999977 33221 1 11234
Q ss_pred CCcEEEecccCCC-CCC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH
Q 012718 260 DADFLVASSHKMC-GPT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 260 ~~d~~~~s~~K~~-gp~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
.+|+++ +.|.+ |.. .+|.+++++++.+.+.+.. +... . ..+...|+...++..+.|+.+
T Consensus 261 ~PDiv~--~gK~l~gG~~Pi~av~~~~~i~~~~~~~~-~~~~---------------h-~~T~~gnpl~~aaa~a~l~~i 321 (443)
T PRK07483 261 APDLVT--IAKGLGAGYQPIGAVLASDRIYDAIADGS-GFFQ---------------H-GHTYLGHATACAAALAVQRVI 321 (443)
T ss_pred CCCeee--ehhhhccCccccEEEEEcHHHHHHHhcCC-Cccc---------------c-CCCCCCCHHHHHHHHHHHHHH
Confidence 589988 58944 342 4899999988766554210 0000 0 001235666677777777777
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcC-CCEEEeCCCCCCcCccccEEEEEeCCC------------ChHHHHHHHhhhcC
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSI-PNIRIYGPKPSEHVQRAALCSFNVENI------------HPTDIATLLDQQYG 404 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~~~l~~~~g 404 (458)
.+. .+.++.+++.++|.+.|+++ ....+.... ...|.++.+.+... ....+.+.+.++ |
T Consensus 322 ~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v----RG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G 393 (443)
T PRK07483 322 AED---GLLANVRARGEQLRARLRERLGQHPHVGDI----RGRGLFVGVELVADRATKAPFDPALKLHARIKREAMAR-G 393 (443)
T ss_pred Hhc---CHHHHHHHHHHHHHHHHHHHHhcCCCeeeE----eecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHC-C
Confidence 663 45666666777777666542 111111111 23355676666311 124577778888 9
Q ss_pred eEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 405 VATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 405 i~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.+.+...+... ...+.+|+.+.+..+++|||+++++|+++++++.
T Consensus 394 ll~~~~~~~~~~-----~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 394 LMVYPMGGTIDG-----VRGDHVLLAPPFIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred cEEEecCccccC-----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 998643210000 0036899999999999999999999999998754
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-15 Score=145.25 Aligned_cols=349 Identities=11% Similarity=0.077 Sum_probs=212.4
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+.+..... .... ..+...++.+.|++.+.... +.+.|+++|+
T Consensus 29 dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~--~~~~----~~~~~~~lae~L~~~~p~~~-~~v~f~~sGs 101 (447)
T PRK06917 29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVY--RSQF----TSEPAEKLAKKLSDLSPGDL-NWSFFVNSGS 101 (447)
T ss_pred CCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCcc--cccc----CCHHHHHHHHHHHHhCCCCC-CEEEEeCChH
Confidence 344566642 245678999999999887642111 0001 12334467777878775332 3789999999
Q ss_pred HHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHHcCC---------eEEEEeCCCCC-----C------
Q 012718 140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQKTGA---------NLKFLNLNDDE-----S------ 195 (458)
Q Consensus 140 ~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~---------~~~~v~~~~~~-----~------ 195 (458)
+|++.+++..+.. ....+.+|+....+||+.......+....+. .+..++..... .
T Consensus 102 EAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 181 (447)
T PRK06917 102 EANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQ 181 (447)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHH
Confidence 9999999865211 1234578999999999877654443211000 11222211100 0
Q ss_pred -CCHHHHHHhhc----CCceEEEEecccCcC-ccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCC
Q 012718 196 -PDLDKLKEMLS----RKTKLVVIHHISNML-ASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLD 260 (458)
Q Consensus 196 -~d~~~l~~~l~----~~~~~v~~~~~~n~t-G~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~ 260 (458)
-+++.+++.++ +++.+|+++...... |.+.| ++.|.++|+++|+++|+|+++. +|..- + ......
T Consensus 182 ~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~ 261 (447)
T PRK06917 182 LACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVE 261 (447)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCC
Confidence 02456666664 357899999887654 46655 8899999999999999999986 32211 1 112335
Q ss_pred CcEEEecccCCCC-CC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccC--CCCCCHHHHHHHHHHHHH
Q 012718 261 ADFLVASSHKMCG-PT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFE--AGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 261 ~d~~~~s~~K~~g-p~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~~~~~l~~al~~ 336 (458)
+|+++ ++|.+| .. .+|.+++++++.+.+.+... . -+. +.+.+....++..++|+.
T Consensus 262 PDi~~--~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~-~------------------~~~~~T~~gnpl~~aaa~a~l~~ 320 (447)
T PRK06917 262 PDIMT--LGKGLGAGYTPIAATVVSDRVMEPILRGSR-S------------------IMSGHTLSANPLSAATALAVLEY 320 (447)
T ss_pred CCEEE--eeehhccCCcceEEEEEcHHHHHHHhccCc-c------------------cccccCCCCCHHHHHHHHHHHHH
Confidence 89876 689544 32 48899999887665532100 0 011 123566667777777887
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC------------ChHHHHHHHhhhc
Q 012718 337 LSTIGMQKIHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI------------HPTDIATLLDQQY 403 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~~~l~~~~ 403 (458)
+.+. .+.++.+++.++|.+.|+++. ...+.... ...|.++.+.+... ....+.+.+.++
T Consensus 321 l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v----rG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 392 (447)
T PRK06917 321 MEKH---NLPEKAAEKGEYLIKGLQKVQQQSTIIGDV----RGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKN- 392 (447)
T ss_pred HHHC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEE----eecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhC-
Confidence 7653 455666677777777665541 11111111 22355666666210 134567777888
Q ss_pred CeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 404 GVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 404 gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
|+.+.+..... .....+.+|+++.+..|++||++++++++++++++.
T Consensus 393 Gvl~~~~~~~~-----~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 439 (447)
T PRK06917 393 GLLLYPAVAGQ-----DGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMM 439 (447)
T ss_pred CcEEEeccccc-----CCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 99986532100 000146899999998999999999999999998763
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=145.65 Aligned_cols=321 Identities=14% Similarity=0.173 Sum_probs=209.9
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CCCCC----CcE--EEeCChhHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASDS----GEI--VFTKNATEA 141 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~~~----~~v--~~t~g~t~a 141 (458)
+|-|..+-.+..+.|.++-.......... .+-........++.+++++ |.+.+ ..+ +-|.|||.|
T Consensus 35 vY~de~Gk~pvl~aV~~Ae~~l~~~~~~k--------~Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGA 106 (396)
T COG1448 35 VYKDEDGKTPVLRAVKKAEKRLLEQEKTK--------NYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGA 106 (396)
T ss_pred eeeCCCCCcchhHHHHHHHHHhhcccccc--------ccCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchH
Confidence 56677777777777777766555432111 1112334445556666655 43311 133 567899999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcC---CceEEEEec
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSR---KTKLVVIHH 216 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~---~~~~v~~~~ 216 (458)
+.+++..+. ...+...|++++|+|+.+ ..+.+..|.++..+|.-+ +..+|.+.+.+.|.. +..++.-..
T Consensus 107 L~~~A~fl~--~~~~~~~vwis~PtW~NH----~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~C 180 (396)
T COG1448 107 LRVAADFLA--RFFPDATVWISDPTWPNH----KAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGC 180 (396)
T ss_pred HHHHHHHHH--HhCCCceEEeCCCCcHhH----HHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecC
Confidence 999999885 356777899999999955 444556699999999763 345788888777754 456666777
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEecccc-CCcccCCCCC--------CC-CcEEEecccCCCCCCc--eeEEE
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQS-VPHMVVDVQG--------LD-ADFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~-~g~~~~~~~~--------~~-~d~~~~s~~K~~gp~g--~G~l~ 281 (458)
.|||||.-++ +++|.++.+++|++.++|-+|- ++.- ++-+. .+ .-+++.|+||.||.+| +|.+.
T Consensus 181 cHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~ 259 (396)
T COG1448 181 CHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALS 259 (396)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeE
Confidence 8999999998 6788888899999999999965 3322 32111 12 3678889999999888 66555
Q ss_pred Eecc---ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH-------HHHHhCHHHHHHHHHH
Q 012718 282 GKSD---LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID-------YLSTIGMQKIHAYEME 351 (458)
Q Consensus 282 ~~~~---~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~-------~~~~~g~~~~~~~~~~ 351 (458)
+-.+ ...++..... ...|-..++|+..+.......|+ |.+ .+..+++++.+
T Consensus 260 vva~~~~~a~~v~sqlk-----------------~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~--El~~Mr~Ri~~ 320 (396)
T COG1448 260 VVAEDAEEADRVLSQLK-----------------AIIRTNYSNPPAHGAAVVATILNNPELRAEWEQ--ELEEMRQRILE 320 (396)
T ss_pred EEeCCHHHHHHHHHHHH-----------------HHHHhccCCCchhhHHHHHHHhCCHHHHHHHHH--HHHHHHHHHHH
Confidence 4321 1111110000 00122345666666655555543 222 37889999999
Q ss_pred HHHHHHHHHhcC-C--CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEE
Q 012718 352 LAKYLYENLLSI-P--NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR 428 (458)
Q Consensus 352 l~~~l~~~L~~~-~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lR 428 (458)
+++.|.+.|++. + .+..+... .++ |...+.+.+++ .+|+++++|++... + |
T Consensus 321 mR~~lv~~L~~~~~~~~f~~i~~Q-------~GM--Fsy~Gls~~QV-~rLree~~IY~v~s--------------G--R 374 (396)
T COG1448 321 MRQALVDALKALGAPRNFDFIISQ-------RGM--FSYTGLSPEQV-DRLREEFGIYLVAS--------------G--R 374 (396)
T ss_pred HHHHHHHHHHhhCCCcccchHhhc-------Cce--eecCCCCHHHH-HHHHHhccEEEecC--------------C--e
Confidence 999999999873 2 34444333 344 33447666554 56666679998632 2 8
Q ss_pred EeeCCCCCHHHHHHHHHHHHHH
Q 012718 429 ASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 429 is~~~~~t~~di~~l~~~l~~~ 450 (458)
|++.. .+...|+.+++.+.++
T Consensus 375 i~vaG-l~~~ni~~va~ai~~v 395 (396)
T COG1448 375 INVAG-LNTSNIDYVAKAIAAV 395 (396)
T ss_pred eeecc-CChhhHHHHHHHHHhh
Confidence 99876 6779999999998875
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.6e-16 Score=141.34 Aligned_cols=349 Identities=18% Similarity=0.187 Sum_probs=234.8
Q ss_pred EecCCCCCC-CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 70 YLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 70 ~l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
|+..|..+. .|+.+...+.+.-..+-.+. ...-..+.+.-+.+-+.+..++++.|.+-. +--+-.++|.+-+.++.+
T Consensus 79 fiG~GyY~~~~P~vI~rnile~pewyTaYT-PYQpEISQGrLqaLfefQtlv~dLTGm~VA-NASm~DeaTAaAEAm~ma 156 (450)
T COG0403 79 FIGAGYYDTYTPPVILRNILENPEWYTAYT-PYQPEISQGRLEALFEFQTLVADLTGLDVA-NASMLDEATAAAEAMLMA 156 (450)
T ss_pred hccCcccCCcCcHHHHHHhhcCccccccCC-CCchhhhhHHHHHHHHHHHHHHHHhCCCcc-cchhhhhHHHHHHHHHHH
Confidence 556666664 44444435554322221111 112223334556667789999999999854 556677888888888877
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCc-ccccH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA-SILPI 227 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG-~~~~l 227 (458)
.+.. -.+.++++++...|+.....++..++..|.+++.++.+ |++++++..+.++..+++..|+ ..| ...++
T Consensus 157 ~r~~-k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~~~~~~~gv~vQyP~-~~G~~~~d~ 229 (450)
T COG0403 157 KRVT-KKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESADDGDVFGVLVQYPN-TFGIVEEDL 229 (450)
T ss_pred HHhh-cCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhccccCeEEEEEecCC-CCCccchhH
Confidence 7421 12368999999999999999999999999999999877 7888888833478899999985 677 66679
Q ss_pred HHHHHHHHhcCcEEEEeccc-cCCcccCCCCCCCCcEEEecccCC-----CCCCceeEEEEeccccccCCCccccCcceE
Q 012718 228 EEIVHWSHDVGAKVLVDACQ-SVPHMVVDVQGLDADFLVASSHKM-----CGPTGIGFLFGKSDLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~-~~g~~~~~~~~~~~d~~~~s~~K~-----~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~ 301 (458)
++|.+.+|++|.++++=.-- +++.+ -...++|+|+++++.+.+ ||++.+|++.++++..+.++-.+.|-..
T Consensus 230 ~~l~~~~h~~~al~~v~aDplaL~LL-~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~-- 306 (450)
T COG0403 230 RALIEAAHSAGALVIVAADPLALGLL-KPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSV-- 306 (450)
T ss_pred HHHHHHHhhcCCEEEEEechhHhhcc-CCccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeee--
Confidence 99999999999877753321 23333 245678999999999985 4444499999999998888855443221
Q ss_pred eeecCCCCCC------CCCCccCCCCCCHHHHHHHHH-----HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC-CEEEe
Q 012718 302 DVFLDHSTFA------DPPSRFEAGTPAIGEAIGLGA-----AIDYLSTIGMQKIHAYEMELAKYLYENLLSIP-NIRIY 369 (458)
Q Consensus 302 ~~~~~~~~~~------~~~~~~~~gt~~~~~~~~l~~-----al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~-~~~~~ 369 (458)
....-..|. .-..|-+..|+|....-++.+ .+.++...|+.++..++.+++.++.+.|++.. |+++.
T Consensus 307 -D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~ 385 (450)
T COG0403 307 -DAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELV 385 (450)
T ss_pred -cCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEec
Confidence 000001110 011234455666644433332 23456667899999999999999999999652 67776
Q ss_pred CCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.... -..+.++++......+.++.... |+.++.-. ...+-+++.--+|.+||+.+++.+..
T Consensus 386 ~~~f------Fdt~~v~~~~~~~~~l~~~~~~~-G~~L~~~~------------~~~~~ia~tEt~t~~~i~~l~~~~~~ 446 (450)
T COG0403 386 FDHF------FDTFTVRVPEEVAEALLAAAIAG-GINLRRVD------------ADTVLIALTETTTKEDIDALVAAFGG 446 (450)
T ss_pred cccc------eeeEEEecchhHHHHHHHHHHhc-CCceeeec------------CCceEEEeecccCHHHHHHHHHHHhh
Confidence 5431 23567777643345555555555 77775322 44677888877899999999998876
Q ss_pred H
Q 012718 450 T 450 (458)
Q Consensus 450 ~ 450 (458)
.
T Consensus 447 ~ 447 (450)
T COG0403 447 V 447 (450)
T ss_pred h
Confidence 4
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=133.65 Aligned_cols=318 Identities=14% Similarity=0.169 Sum_probs=221.7
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCC--
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSN-- 153 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~-- 153 (458)
.|...+.+++++.+..+++.-. +.- -....+.+..+.+.+++|.+ .|.-++.|.+|.+.++...+...
T Consensus 73 qGhchpki~~aLqeq~~kLtls---sra----fYnd~~~~f~~~vt~lf~~~---kvlpmnTGaEa~Eta~KLaR~wgy~ 142 (427)
T KOG1402|consen 73 QGHCHPKIIKALQEQADKLTLS---SRA----FYNDVLGEFAEYVTKLFGYD---KVLPMNTGAEAVETACKLARKWGYR 142 (427)
T ss_pred cCCCCHHHHHHHHHHHhHhhhh---hHH----HhhhhHHHHHHHHHHhcCcc---eeeecccchhHHHHHHHHHHHHHHh
Confidence 3457788999999888764221 100 12344556778899999987 78889888999999988664111
Q ss_pred ---CC-CCCEEEEcCCCCccchHHHHHH------HHHcC----CeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEeccc
Q 012718 154 ---LK-SGDEVILTVAEHHSAIVPWQLV------AQKTG----ANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHIS 218 (458)
Q Consensus 154 ---~~-~g~~vl~~~~~~~s~~~~~~~~------a~~~g----~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~ 218 (458)
+. ...+|+....+|++-..+...+ -..+| ..+..||.. |.++|+..+++ +.+.++++..+
T Consensus 143 ~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~-----d~eale~~l~~~~vaaFivEPIQ 217 (427)
T KOG1402|consen 143 KKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG-----DAEALEVALKSPNVAAFIVEPIQ 217 (427)
T ss_pred hccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC-----CHHHHHHHhcCCCeeEEEeeccc
Confidence 11 1235666677777532211111 01111 113444443 88999999876 67999999999
Q ss_pred CcCccccc----HHHHHHHHHhcCcEEEEeccccC----Ccc-cCCCCCCCCcEEEecccCCC--CCCceeEEEEecccc
Q 012718 219 NMLASILP----IEEIVHWSHDVGAKVLVDACQSV----PHM-VVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDLL 287 (458)
Q Consensus 219 n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~----g~~-~~~~~~~~~d~~~~s~~K~~--gp~g~G~l~~~~~~~ 287 (458)
..-|.+.| ++++.++|.+|++++|.|++|.. |.+ ..+.+...+|+++ +.|.+ |...+..++++++++
T Consensus 218 GEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivi--lgKalSGG~~Pvsavl~~~~im 295 (427)
T KOG1402|consen 218 GEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVI--LGKALSGGVYPVSAVLADDDIM 295 (427)
T ss_pred cccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEE--EeccccCCeeeeEEEEecHHHH
Confidence 99999998 89999999999999999999983 222 3355667799999 66833 455588888888887
Q ss_pred ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Q 012718 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR 367 (458)
Q Consensus 288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~ 367 (458)
-.++|.-.|.+. ..|+.+....-++|+.+.+ +++.++...+...|...|.+++- +
T Consensus 296 ~~~~pgeHgsTy---------------------ggNpLg~~vaiAalevi~e---ekL~era~~lG~~l~~~L~~l~~-~ 350 (427)
T KOG1402|consen 296 LNIKPGEHGSTY---------------------GGNPLGCAVAIAALEVIVE---EKLVERAAKLGEILRDQLNKLQK-K 350 (427)
T ss_pred hccCCCcccccc---------------------CCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccc-c
Confidence 777665433221 2455556666678888876 68889999999999999988732 1
Q ss_pred E---eCCCCCCcCccccEEEEEeC-----CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 368 I---YGPKPSEHVQRAALCSFNVE-----NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 368 ~---~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
+ .... ..+|-+..+.+. +.+..+++-.+.++ |+...|.+ .+.+|+++.+..+++|
T Consensus 351 ~p~~v~~V----RGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~-g~LAkptH------------~~IiRfaPPL~I~e~d 413 (427)
T KOG1402|consen 351 FPHVVKEV----RGRGLLNAIVINPSKTSGQDAWDVCLALKEN-GLLAKPTH------------GNIIRFAPPLVISEED 413 (427)
T ss_pred ccchhhee----eccceEEEEEeccccccchhHHHHHHccccc-ccccCCCC------------CCeEEecCCcccCHHH
Confidence 1 1111 233445555443 35677888888988 98887765 5699999999999999
Q ss_pred HHHHHHHHHHHHH
Q 012718 440 VDEFIHALNETVS 452 (458)
Q Consensus 440 i~~l~~~l~~~~~ 452 (458)
+++.+++|.+.+.
T Consensus 414 l~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 414 LREGIEAIEKTIA 426 (427)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-15 Score=145.67 Aligned_cols=329 Identities=12% Similarity=0.079 Sum_probs=193.7
Q ss_pred CCCCcHHHH--HHHHHHHHHhcc-CCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC
Q 012718 76 TSQKPIAVL--KALQNYYEAYNS-NVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 76 ~~~~~~~~~--~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
.|...+.+. +++.+.+.+... .+.. ... ......++.+.|++..+.+.-+.+.|++||++|++.+++..+..
T Consensus 52 lGh~~p~v~~~~ai~~q~~~~~~~~~~~-~~~----~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~ 126 (431)
T TIGR03251 52 LGMNHPALVDDLAFRARLGAAAVNKPSN-SDV----YTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDW 126 (431)
T ss_pred CCCCChhhhHHHHHHHHHHHhhhccccc-CCC----CCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHH
Confidence 345667777 888888775421 1111 011 12233345555666652222238899999999999999876321
Q ss_pred C-----C-C----CCCEEEEcCCCCccchHHHHHHHHHcCCeEE--------EEeCC-------CCC-C-------CCHH
Q 012718 153 N-----L-K----SGDEVILTVAEHHSAIVPWQLVAQKTGANLK--------FLNLN-------DDE-S-------PDLD 199 (458)
Q Consensus 153 ~-----~-~----~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~--------~v~~~-------~~~-~-------~d~~ 199 (458)
. . . .+.+|+....+||+.......+....+..-. .++.. .+. . -+++
T Consensus 127 t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~ 206 (431)
T TIGR03251 127 KSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALR 206 (431)
T ss_pred hhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHH
Confidence 0 0 0 1468999999999876544433211000000 01100 000 0 1234
Q ss_pred HHHHhhc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEec
Q 012718 200 KLKEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVAS 267 (458)
Q Consensus 200 ~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s 267 (458)
++++.+. .++.+|+++.++...|.+.+ +++|.++|++||+++|+|+++. +|.. ..+.....+|+++
T Consensus 207 ~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~-- 284 (431)
T TIGR03251 207 QARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA-- 284 (431)
T ss_pred HHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE--
Confidence 4555553 47899999999999998875 8999999999999999999988 4443 1122344699997
Q ss_pred ccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH-HHHH
Q 012718 268 SHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM-QKIH 346 (458)
Q Consensus 268 ~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~-~~~~ 346 (458)
++|.+ +.+|++.. +++.+....... +.. .-...-+.++...++..++|+.+.+.++ +++.
T Consensus 285 ~gK~~--~~~g~~~~-~~i~~~~~~~~~-~~~---------------~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~ 345 (431)
T TIGR03251 285 FGKKT--QVCGIMAG-RRVDEVADNVFA-VPS---------------RLNSTWGGNLVDMVRATRILEIIEEERLVDNAR 345 (431)
T ss_pred ecccC--ccceEEec-chHHHhhhhccc-Ccc---------------ccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 56644 23455543 332111110000 000 0001123566777788888888876553 3555
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC-hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH-PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
+..+.+.+.|.+...+.+++. ... ...+.++.+.+++.. ...+.+.+.++ ||.+.+.. .+
T Consensus 346 ~~g~~l~~~L~~l~~~~~~~i--~~v----rg~G~~~~i~~~~~~~~~~~~~~l~~~-Gvl~~~~g------------~~ 406 (431)
T TIGR03251 346 VQGAHLLARLHELAAEFPHLV--SNP----RGRGLMCAFDLPSTADRDEVIRQLYRE-GVLLLGCG------------ER 406 (431)
T ss_pred HHHHHHHHHHHHHHHhCccce--ecc----cccceeEEEEeCCHHHHHHHHHHHHhC-CeEEecCC------------CC
Confidence 555555555544333343221 121 123667788876422 34688888888 99986532 35
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 426 SARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.+|++++++++++||+++++.|++
T Consensus 407 ~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 407 SIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred eEEEECCccCCHHHHHHHHHHHHh
Confidence 799999999999999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=149.95 Aligned_cols=345 Identities=13% Similarity=0.132 Sum_probs=219.4
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|.-+ .|---+++.+++.+.+.++..... . +....+ ..++-+.|+++.....-+.|+|++||+
T Consensus 42 ~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~-~----~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGS 115 (449)
T COG0161 42 DGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMF-G----GFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGS 115 (449)
T ss_pred CCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhh-c----ccCCch-HHHHHHHHHHhCCCCCccEEEEeCCch
Confidence 3445666432 445668888899888887533211 1 111122 456778888888733223999999999
Q ss_pred HHHHHHHHHcCCCCC---CC-CCEEEEcCCCCccchHHHHHHHHHcC----------CeEEEEeCCC------CCC----
Q 012718 140 EAINLVAYSWGLSNL---KS-GDEVILTVAEHHSAIVPWQLVAQKTG----------ANLKFLNLND------DES---- 195 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~---~~-g~~vl~~~~~~~s~~~~~~~~a~~~g----------~~~~~v~~~~------~~~---- 195 (458)
+|++.++.....+.. ++ +.+++.-..+||+......++..... ..+..++... ++.
T Consensus 116 eAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~ 195 (449)
T COG0161 116 EAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEE 195 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHH
Confidence 999999986532111 22 34699999999987655444432000 1122333321 111
Q ss_pred --CCHHHHHHhhcC----CceEEEEecccCc-Cccccc----HHHHHHHHHhcCcEEEEecccc-CCcc--cCCCC--CC
Q 012718 196 --PDLDKLKEMLSR----KTKLVVIHHISNM-LASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--VVDVQ--GL 259 (458)
Q Consensus 196 --~d~~~l~~~l~~----~~~~v~~~~~~n~-tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~--~~~~~--~~ 259 (458)
-..++|++.|.. ++.+++++.+..- .|+++| ++++.++|++||+++|.|++-. +|.. .+.-+ ..
T Consensus 196 ~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi 275 (449)
T COG0161 196 FAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGI 275 (449)
T ss_pred HHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCC
Confidence 124566776654 5678888887776 888887 8999999999999999999954 3322 12222 23
Q ss_pred CCcEEEecccC-CCCCC-ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH
Q 012718 260 DADFLVASSHK-MCGPT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 260 ~~d~~~~s~~K-~~gp~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
.+|+++ ..| +-|++ .+|.+++++++.+.+..-..+.. . .++ +.+.++...++..+.|+.+
T Consensus 276 ~PDi~~--~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f------~---------HG~-TYsghPlacAaAla~L~i~ 337 (449)
T COG0161 276 VPDILC--LAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAF------M---------HGH-TYSGNPLACAAALANLDIL 337 (449)
T ss_pred CCCeee--ecccccccchhhHhHhhhHHHHHHHhcccCCee------c---------cCC-ccccCHHHHHHHHHHHHHH
Confidence 489998 678 43333 38888888887766542211111 1 111 2256666666666777777
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCCCcCccccEEEEEeC-CCC---------hHHHHHHHhhhcCeE
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLS-IPNIRIYGPKPSEHVQRAALCSFNVE-NIH---------PTDIATLLDQQYGVA 406 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~---------~~~~~~~l~~~~gi~ 406 (458)
.+ +.+.++.+++..+|.+.|.+ +.+...+... ...|.+..+.+. +.. ...+.+.+.++ |+.
T Consensus 338 e~---e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdV----R~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~-Gl~ 409 (449)
T COG0161 338 EE---EDLLERVAEIGAYLQAGLQAALADHPLVGDV----RGLGLIGAIELVADKATKTPFEARVGARVRAAALER-GLL 409 (449)
T ss_pred Hh---cCHHHHHHHHHHHHHHHHHHhcccCCcEEEe----eccceEEEEEEecccccccchhhhHHHHHHHHHHHC-CeE
Confidence 76 45666777788888888876 3332233333 223556666663 222 34677777788 999
Q ss_pred eccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 407 TRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 407 ~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+||.. ..+=+++.+..|.+||+++++.+.+.+++..
T Consensus 410 iRp~g-------------~~i~~~PPliit~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 410 IRPLG-------------DVIYLMPPLIITREEIDELVDALREALDETL 445 (449)
T ss_pred EeecC-------------CEEEEcCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 99752 4788899988999999999999999998754
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-15 Score=137.92 Aligned_cols=385 Identities=15% Similarity=0.100 Sum_probs=245.8
Q ss_pred cCCCCCCCCCccchhhhh-cCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhh-hHHHH
Q 012718 34 SSSPSVTSTDSVSLGHIT-RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS-AKATD 111 (458)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~-r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~ 111 (458)
+.+++...++-.++...+ +-.+|..+.+++ ..-..||..+. ..|.-+-+-+...+.. .|..+.+ +..++
T Consensus 43 P~~aPe~pE~~~~Il~D~ekiI~PGitHw~h-P~fhAyfpa~~--s~~siladmLs~~i~~------vGFtW~ssPa~TE 113 (511)
T KOG0628|consen 43 PSKAPEKPESWEDILGDLEKIIMPGITHWQH-PHFHAYFPAGN--SYPSILADMLSGGIGC------VGFTWASSPACTE 113 (511)
T ss_pred CCCCCCChhhHHHHHHHHHHHccCCCcccCC-CceeeEccCcc--chHHHHHHHHhccccc------ccceeecCcchHH
Confidence 344444455555555555 456888888877 22234443322 2333222333222211 1222222 33455
Q ss_pred HHHHHHHHHHHHcCCCC--------CCcEEEeCChhHHHHHHHHHcCCCC---CCCC------------CEEEEcCCCCc
Q 012718 112 EYELARKKVAAFINASD--------SGEIVFTKNATEAINLVAYSWGLSN---LKSG------------DEVILTVAEHH 168 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~--------~~~v~~t~g~t~a~~~~~~~l~~~~---~~~g------------~~vl~~~~~~~ 168 (458)
+..-+.+.|+++++.+. +-..++.++++++...++.+.+... ++.+ =.+..++..|.
T Consensus 114 LE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahs 193 (511)
T KOG0628|consen 114 LEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHS 193 (511)
T ss_pred HHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccc
Confidence 55568899999998872 1145777778888888776653111 1111 25677788888
Q ss_pred cchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC------ceEEEEecccCcCcccccHHHHHHHHHhcCcEEE
Q 012718 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 169 s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
+. ++.|...|++++.++.+.+..++.+.|+++|.++ +-+++.+-.++.+....++++|..+|+++|+|++
T Consensus 194 sv----eka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLH 269 (511)
T KOG0628|consen 194 SV----EKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCREEGLWLH 269 (511)
T ss_pred hH----HHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhhcCEEEE
Confidence 54 6667777999999999999889999999999763 3566677777777777889999999999999999
Q ss_pred EeccccCCcc---cCC--CCCC-CCcEEEecccCC-CCCCceeEEEEecccc--ccC--CCccccCcceEeeecCCCCC-
Q 012718 243 VDACQSVPHM---VVD--VQGL-DADFLVASSHKM-CGPTGIGFLFGKSDLL--SAM--PPFLGGGEMISDVFLDHSTF- 310 (458)
Q Consensus 243 vD~a~~~g~~---~~~--~~~~-~~d~~~~s~~K~-~gp~g~G~l~~~~~~~--~~l--~~~~~g~~~~~~~~~~~~~~- 310 (458)
||++|+..+. .++ +... .+|.+.++.||+ +.-..|..+++++... ..+ .|.+--+..... -.+...|
T Consensus 270 VDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~-~~Dyrhwq 348 (511)
T KOG0628|consen 270 VDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGS-APDYRHWQ 348 (511)
T ss_pred eehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhcc-CCCccccc
Confidence 9999995553 111 1111 279999999995 4445588899988631 111 122111110000 1111222
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC
Q 012718 311 ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI 390 (458)
Q Consensus 311 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 390 (458)
-+..+||.. +-++..++.+...++.+..++..++++.+.+.+.+-+.+++..+.. .+++||++.+.
T Consensus 349 ipl~rRfRS--------LKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~------lgLvcFRlk~~ 414 (511)
T KOG0628|consen 349 IPLGRRFRS--------LKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRI------LGLVCFRLKGD 414 (511)
T ss_pred cccccchhh--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccc------cceeEEeecCC
Confidence 222345532 4555555655555566666666788888998888888899877653 78999999864
Q ss_pred C--hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhh
Q 012718 391 H--PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH-FYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 391 ~--~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+ .+.+.+++.....|.+.+.. +.+.-.+|++++ ...+.+||++..+.|.+..+++.
T Consensus 415 N~~ne~Ll~~in~~g~i~l~~~~---------l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~ 473 (511)
T KOG0628|consen 415 NEINEALLNRLNSSGRIHLVPAS---------LHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELF 473 (511)
T ss_pred cHHHHHHHHHHHhcCcEEEEEee---------ecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3 46788888877577776544 333568999876 66788999999999998887643
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-14 Score=142.77 Aligned_cols=339 Identities=14% Similarity=0.126 Sum_probs=206.2
Q ss_pred CeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC-CCcE-EEeCCh
Q 012718 67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-SGEI-VFTKNA 138 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~~v-~~t~g~ 138 (458)
+--|+|.. ..|...+.+.+++.+.+.+..... ... -..+...++-+.|++.+.... ...+ ++++||
T Consensus 57 G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~--~~~----~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SG 130 (459)
T PRK06931 57 GNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLH--TLD----LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSG 130 (459)
T ss_pred CCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhcccc--ccc----cCCHHHHHHHHHHHHhCCCccccceEEEeCCCc
Confidence 44556542 245677889999998876421110 100 012334456667777764321 1134 555899
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHc---------CCeEEEEeCCCCC--------CCCHHHH
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT---------GANLKFLNLNDDE--------SPDLDKL 201 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~---------g~~~~~v~~~~~~--------~~d~~~l 201 (458)
++|++.+++..+ ....+++|+....+||+.......+.... ...+..+|..... .-+.+.+
T Consensus 131 sEAve~AlklAr--~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (459)
T PRK06931 131 ADAVEAAIKLAK--TYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKAL 208 (459)
T ss_pred HHHHHHHHHHHH--HhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHH
Confidence 999999998764 24556789999999998876554432110 0123334432111 0122222
Q ss_pred ----HHhhc------CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCc
Q 012718 202 ----KEMLS------RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDAD 262 (458)
Q Consensus 202 ----~~~l~------~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d 262 (458)
++.++ +++.+|+++.++...|.+.| ++.+.++|++||+++|.|+++. +|.. -.......+|
T Consensus 209 ~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PD 288 (459)
T PRK06931 209 TYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPD 288 (459)
T ss_pred HHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCC
Confidence 33332 24789999999888898876 8999999999999999999977 4322 1112234599
Q ss_pred EEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 263 FLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 263 ~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
+++ +.| +.|+..+|.+..+++. +.+.+...+ ...+.|+...++..+.|+.+.+.
T Consensus 289 ivt--~gK~l~gG~Pi~av~~~~~~-~~~~~~~~~---------------------~T~~gnpla~aaala~L~~l~~~- 343 (459)
T PRK06931 289 IIV--MSKAVGGGLPLAVLGIKKEF-DAWQPGGHT---------------------GTFRGNQLAMATGLTTLKILKEE- 343 (459)
T ss_pred EEE--ecccccCCcceeeeeeHHHH-hhccCCCCC---------------------CCCCCCHHHHHHHHHHHHHHHhC-
Confidence 988 578 4444447888777653 443321111 11235666677777778877664
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC------------C---hHHHHHHHhhhcCe
Q 012718 342 MQKIHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI------------H---PTDIATLLDQQYGV 405 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~------------~---~~~~~~~l~~~~gi 405 (458)
.+.++.+++.++|.+.|+++. ...+.... ...|.++.+.+... + ...+...+.++ |+
T Consensus 344 --~l~~~~~~~G~~l~~~L~~l~~~~~~i~~v----rG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gv 416 (459)
T PRK06931 344 --NLAQNAAERGEWLKAQLAELQKRYPCIGNV----RGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFEN-GL 416 (459)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhCCCeEeE----ecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHC-Cc
Confidence 345566666666666665430 11111111 23366777766321 0 13466667777 99
Q ss_pred EeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 406 ATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 406 ~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.+.+... ..+.+|+.+++..|++||++++++++++++++.
T Consensus 417 l~~~~~~----------~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 456 (459)
T PRK06931 417 LLERGGR----------NGNVVRLLPPLLITQAECEEFIDRFEQALLAAV 456 (459)
T ss_pred EEeecCC----------CCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 9865321 146899999998999999999999999998754
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-15 Score=146.07 Aligned_cols=313 Identities=17% Similarity=0.184 Sum_probs=197.2
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.|...+.+.+++.+.+.+.... +. ..+...++-+.|++.+.. .+.+.|+++||+|+..+++..+ ...
T Consensus 113 lGh~~p~v~~av~~ql~~~~~~---~~------~~~~~~~lAe~l~~~~p~--~~~v~f~~SGsEA~e~AlklAR--~~t 179 (474)
T PLN02482 113 IGHADDEVLAALAETMKKGTSF---GA------PCLLENVLAEMVIDAVPS--VEMVRFVNSGTEACMGVLRLAR--AYT 179 (474)
T ss_pred cCCCCHHHHHHHHHHHhhCCCC---CC------CCHHHHHHHHHHHHhCCC--CCEEEEeCChHHHHHHHHHHHH--Hhc
Confidence 4456789999999998763211 11 123334556667776643 2489999999999999998764 245
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHH----------cCC------eEEEEeCCCCCCCCHHHHHHhhc---CCceEEEEec
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQK----------TGA------NLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHH 216 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~----------~g~------~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~ 216 (458)
.+++|+....+||+....+...... .|. .+..++. -|++.+++.+. .++.+|+++.
T Consensus 180 gr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~~~~~iAavI~Ep 254 (474)
T PLN02482 180 GREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-----NDLEAVKKLFEANKGEIAAVILEP 254 (474)
T ss_pred CCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-----CChHHHHHHHHhCCCceEEEEECC
Confidence 5678999999999864322211000 000 0111221 17888888885 3578999999
Q ss_pred ccCcCccccc----HHHHHHHHHhcCcEEEEeccccCCcccCC------CCCCCCcEEEecccCCCC-CCceeEEEEecc
Q 012718 217 ISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHMVVD------VQGLDADFLVASSHKMCG-PTGIGFLFGKSD 285 (458)
Q Consensus 217 ~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~~~~------~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~ 285 (458)
+....|.+.| +++|.++|++||+++|+|+++. |.. .. .....+|+++ ++|.+| ...+|.+.++++
T Consensus 255 v~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR-~g~~ga~~~~gv~PDi~t--~gK~lggG~Pigav~g~~e 330 (474)
T PLN02482 255 VVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFR-IAYGGAQEYFGITPDLTT--LGKVIGGGLPVGAYGGRRE 330 (474)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cee-cCcchHhHHhCCCCCEEE--ecchhhCCCceEEEEEcHH
Confidence 9999998887 6799999999999999999985 321 11 1123488865 689544 334888899988
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCC--CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGT--PAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+++.+.+. + ..+..+| .++...++..++|+.+.+ +.+.+++.++.++|.+.|.++
T Consensus 331 i~~~~~~~--~------------------~~~~~~T~~gnpl~~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l 387 (474)
T PLN02482 331 IMEMVAPA--G------------------PMYQAGTLSGNPLAMTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILEA 387 (474)
T ss_pred HHHhhccC--C------------------CcccccCcchhHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHH
Confidence 87766421 0 0011233 455566666677777754 346677777777777777654
Q ss_pred ---CCEEEeCCCCCCcCccccEEEEEeCC--C---------C---hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCe
Q 012718 364 ---PNIRIYGPKPSEHVQRAALCSFNVEN--I---------H---PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNAS 426 (458)
Q Consensus 364 ---~~~~~~~~~~~~~~~~~~~v~~~~~~--~---------~---~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~ 426 (458)
.++.+.... . .+++.+.+.. . + ...+.+.+.++ ||.+.+..+ +.
T Consensus 388 ~~~~g~~~~~~~-----v-~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-Gv~~~~~~~-----------~~- 448 (474)
T PLN02482 388 GKKAGHEMCGGY-----I-SGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEE-GVYLAPSQF-----------EA- 448 (474)
T ss_pred HHhcCCCEEEcc-----c-ceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHC-CeEEeccCC-----------CC-
Confidence 122222111 0 2343333311 0 1 23567778888 999875321 11
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 427 ARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 427 lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+ .++..+|++|||+++++++++++++
T Consensus 449 -~-~psl~ht~~dId~~l~al~~~l~~~ 474 (474)
T PLN02482 449 -G-FTSLAHTEEDIDFTIAAAERVLARI 474 (474)
T ss_pred -C-cCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 1 1455589999999999999998753
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-15 Score=158.06 Aligned_cols=339 Identities=14% Similarity=0.162 Sum_probs=216.8
Q ss_pred CCeEEecC----CCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 66 KKLVYLDN----AATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 66 ~~~i~l~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
++.-|+|. ...|...+.+.+++.+.+.+.+.+. . + ..+...++-+.|++.+...- +.+.|++|||+|
T Consensus 622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~--~-~-----~~~~~~~lAe~L~~~~p~~~-~~v~f~nSGsEA 692 (1013)
T PRK06148 622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNT--R-Y-----LHDAIVAYAERLTATLPDGL-TVAFFVNSGSEA 692 (1013)
T ss_pred CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcC--C-c-----CCHHHHHHHHHHHHhCCCCc-CEEEEeCCcHHH
Confidence 45556665 2455678899999999988753322 1 1 12334456677777765332 378999999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH----H-cC----CeEEEEeCCCC----CC-CC-------HHH
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ----K-TG----ANLKFLNLNDD----ES-PD-------LDK 200 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~----~-~g----~~~~~v~~~~~----~~-~d-------~~~ 200 (458)
++.+++..+ ....+.+|++...+||+.......+.. . .+ ..+..++.... +. .+ .+.
T Consensus 693 ~e~AlklAr--~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 770 (1013)
T PRK06148 693 NSLALRLAR--AHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAES 770 (1013)
T ss_pred HHHHHHHHH--HhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHH
Confidence 999998764 245567899999999987654332210 0 01 11222221110 00 01 133
Q ss_pred HHHhhc------CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc---CCC--CCCCCcEE
Q 012718 201 LKEMLS------RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV---VDV--QGLDADFL 264 (458)
Q Consensus 201 l~~~l~------~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~---~~~--~~~~~d~~ 264 (458)
+++.+. +++.+|+++.+....|.+.+ ++++.++|+++|+++|.|+++. +|..- +.. ....+|++
T Consensus 771 l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDiv 850 (1013)
T PRK06148 771 VAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIV 850 (1013)
T ss_pred HHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCccee
Confidence 554443 35789999999988898887 9999999999999999999985 44321 112 23458998
Q ss_pred EecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 265 VASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 265 ~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
+ +.|. .|+..+|.+++++++.+.+.+-.. -+.+-..|....++..++|+.+.+.
T Consensus 851 t--~gK~lggG~Plgav~~~~ei~~~~~~g~~--------------------~~~Tf~gnpla~aaa~a~L~~i~~e--- 905 (1013)
T PRK06148 851 T--MGKPIGNGHPMGAVVTTREIADSFDNGME--------------------YFNTFGGNPVSCAIGLAVLDIIEDE--- 905 (1013)
T ss_pred e--ecccccCCcceEEEEEcHHHHhhccCCCc--------------------cccCCCCCHHHHHHHHHHHHHHhhc---
Confidence 7 6894 445559999999888766542100 0112235666677777778877663
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCC------C---hHHHHHHHhhhcCeEeccCCCC
Q 012718 344 KIHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENI------H---PTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~------~---~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
.+.++.+++.++|.+.|+++. ...+.... ...|.++.+.+... + ...+.+.+.++ ||.+.+...
T Consensus 906 ~l~~~~~~~G~~l~~~L~~l~~~~~~i~~V----rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~g~- 979 (1013)
T PRK06148 906 DLQRNALEIGNYLLAGLRELQDRFDIIGDV----RGMGLFLGIELVTDRKTKAPATAIARYVKNGARER-GILIGTEGP- 979 (1013)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCceEE----eeeceEEEEEecCCccccCccHHHHHHHHHHHHhC-CeEEeccCC-
Confidence 466667777777777776541 11111111 22355777766421 1 24577778888 999864210
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
..+.+|+.+++..|++|||++++.|+++++++.
T Consensus 980 ---------~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~~ 1012 (1013)
T PRK06148 980 ---------HDNVLKIRPPLIFSRADADHLLEVLDDVLAAAL 1012 (1013)
T ss_pred ---------CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 147899999999999999999999999998653
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-15 Score=144.37 Aligned_cols=335 Identities=13% Similarity=0.143 Sum_probs=200.1
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHH-HHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNY-YEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~ 138 (458)
++..|+|..+ .|...+.+.+++.+. ......+.. . .......+..+.+.+.+++++..+- +.+.|++||
T Consensus 56 dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~-~--~~~~~~~~la~~l~~~l~~~~p~~~-~~v~f~~SG 131 (464)
T TIGR00699 56 DGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINRP-A--LGNFPSKDWAKILKEGILKVAPKGQ-DQVWTGMSG 131 (464)
T ss_pred CCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhcccc-c--CCcHHHHHHHHHHHHhHHhhCCCCc-CEEEEeCCc
Confidence 4556777643 356788899999874 222111111 1 1111223333444444555654222 389999999
Q ss_pred hHHHHHHHHHcCCC------CC-----------------C--CCCEEEEcCCCCccchHHHHHHHHH-----cCC---eE
Q 012718 139 TEAINLVAYSWGLS------NL-----------------K--SGDEVILTVAEHHSAIVPWQLVAQK-----TGA---NL 185 (458)
Q Consensus 139 t~a~~~~~~~l~~~------~~-----------------~--~g~~vl~~~~~~~s~~~~~~~~a~~-----~g~---~~ 185 (458)
++|++.+++..+.. .. . ++.+|+....+||+.......+... .+. .+
T Consensus 132 sEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~ 211 (464)
T TIGR00699 132 SDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDW 211 (464)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCc
Confidence 99999999866311 00 0 1237999999999887654443211 011 11
Q ss_pred EEEeCCCC----C----------CCCHHHHHHhhc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEe
Q 012718 186 KFLNLNDD----E----------SPDLDKLKEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVD 244 (458)
Q Consensus 186 ~~v~~~~~----~----------~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD 244 (458)
..+|.... . .-+++.+++.+. .++.+|+++.+....|.+.| +++|.++|++||+++|+|
T Consensus 212 ~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~D 291 (464)
T TIGR00699 212 PQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVD 291 (464)
T ss_pred eecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 22222110 0 013556777774 35799999999999999998 999999999999999999
Q ss_pred cccc-CCcc----cCCCCCC--CCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCcc
Q 012718 245 ACQS-VPHM----VVDVQGL--DADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF 317 (458)
Q Consensus 245 ~a~~-~g~~----~~~~~~~--~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (458)
+++. +|.. -.+.... .+|+++ ++|.+|..| +++.+ +.+....+... .
T Consensus 292 EV~tGfGrtG~~fa~e~~gv~~~PDi~t--~gK~lg~gG--~~~~~-~~~~~~~~~~~---------------------~ 345 (464)
T TIGR00699 292 EVQTGVGATGKFWAHEHWNLDDPPDMVT--FSKKFQTAG--YFFHD-PAFRPNKPYRQ---------------------F 345 (464)
T ss_pred eeeeCCCCCcchhHHHhcCCCCCCCEEE--ehhhhccCC--ccccc-hhccCCCCccc---------------------c
Confidence 9985 3321 0111122 389877 689664322 22222 22111111111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----C-CEEEeCCCCCCcCccccEEEEEeCCC-C
Q 012718 318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI----P-NIRIYGPKPSEHVQRAALCSFNVENI-H 391 (458)
Q Consensus 318 ~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~----~-~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 391 (458)
.....+....++..++|+.+.+. .+.++.+++.++|.+.|+++ | .+.-... ...+.++.+.+++. .
T Consensus 346 ~T~~gnp~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg-----~G~Glm~gie~~~~~~ 417 (464)
T TIGR00699 346 NTWMGDPSRALILREIIQEIKRK---DLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRG-----KGRGTFIAWDTPDEAK 417 (464)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-----cCeEEEEEEecCCHHH
Confidence 12345666677777778877653 45556666666666666543 3 1211110 02377888887642 2
Q ss_pred hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 392 PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 392 ~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
...+.+.+.++ |+.+... | .+.+||.+++..+++||++++++|++++
T Consensus 418 ~~~i~~~~~~~-Gvl~~~~-----------g-~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 418 RDKLLKKARNN-GVNIGGC-----------G-VKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred HHHHHHHHHHC-CcEEecC-----------C-CCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 45678888888 9998642 1 4689999999999999999999998763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-14 Score=155.88 Aligned_cols=328 Identities=13% Similarity=0.094 Sum_probs=209.9
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.|...+.+.+++.+.+.....+. .. ..+...++.+.|++++.... +.++|++||++|++.+++..+ ...
T Consensus 597 lGh~hp~v~~Ai~~q~~~l~~~~---~~-----~~~~~~elae~L~~~~p~~~-~~v~f~~SGsEA~e~AlklAr--~~t 665 (972)
T PRK06149 597 LGHGHPRLAAAAARQWSLLNTNS---RF-----HYAAVAEFSERLAALAPDGL-DTVFLVNSGSEANDLAIRLAW--AAS 665 (972)
T ss_pred cCCCCHHHHHHHHHHHHhccccc---cc-----cCHHHHHHHHHHHHhCCCCc-CEEEEeCCchHHHHHHHHHHH--Hhc
Confidence 44567889999988887643321 11 12344567788888874322 389999999999999998553 234
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHH----cCC------eEEEEeCCCC----C-CCC-----HHHHHHhhc------CCc
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQK----TGA------NLKFLNLNDD----E-SPD-----LDKLKEMLS------RKT 209 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~----~g~------~~~~v~~~~~----~-~~d-----~~~l~~~l~------~~~ 209 (458)
.+.+|+..+.+||+.......+... .+. .+..++.... + ..+ .+++++.++ +++
T Consensus 666 gr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 745 (972)
T PRK06149 666 GRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGL 745 (972)
T ss_pred CCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCce
Confidence 5668999999999765433222110 000 1233332211 1 011 233333332 357
Q ss_pred eEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccc-cCCcccC---CC--CCCCCcEEEecccCCCC-CCcee
Q 012718 210 KLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQ-SVPHMVV---DV--QGLDADFLVASSHKMCG-PTGIG 278 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~-~~g~~~~---~~--~~~~~d~~~~s~~K~~g-p~g~G 278 (458)
.+|+++.+....|.+.+ +++|.++|++||+++|+|+++ ++|...- .. ....+|+++ ++|.+| +..+|
T Consensus 746 AavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt--~gK~lg~G~Pl~ 823 (972)
T PRK06149 746 AGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIIT--MAKGMGNGHPLG 823 (972)
T ss_pred EEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEE--ecccccCCeeeE
Confidence 89999999999999888 999999999999999999999 4554321 11 233589885 789544 44589
Q ss_pred EEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012718 279 FLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYE 358 (458)
Q Consensus 279 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~ 358 (458)
++++++++.+.+... +. -+...+.|+...++..++|+.+.+. .+.++.+++.++|.+
T Consensus 824 av~~~~~i~~~~~~~--~~------------------~~sT~~gnP~~~aaala~L~~i~~e---~l~~~~~~~G~~l~~ 880 (972)
T PRK06149 824 AVITRREIAEALEAE--GY------------------FFSSTGGSPVSCRIGMAVLDVLREE---KLQENARRVGDHLKA 880 (972)
T ss_pred EEEEcHHHHhhhccC--Cc------------------ccCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHH
Confidence 999999887665431 00 0111245666667777778877663 466667677777777
Q ss_pred HHhcCC-CEEEeCCCCCCcCccccEEEEEeCC------CC---hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEE
Q 012718 359 NLLSIP-NIRIYGPKPSEHVQRAALCSFNVEN------IH---PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR 428 (458)
Q Consensus 359 ~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~------~~---~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lR 428 (458)
.|+++. ...+.... ...|.++.+.+.. .+ ...+.+.+.++ ||.+.+.... .+.+|
T Consensus 881 ~L~~l~~~~~~i~~v----rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~-Gvl~~~~g~~----------~~vl~ 945 (972)
T PRK06149 881 RLEALADRHPLIGAV----HGMGLYLGVELVRDRQTLEPATEETAAICDRLLEL-GVIMQPTGDH----------LNILK 945 (972)
T ss_pred HHHHHHHhCCCeEEE----eecceEEEEEEecCcccCCCChHHHHHHHHHHHhC-CeEEeecCCC----------CCEEE
Confidence 765431 01111111 1235677776631 11 34677888888 9998753210 46899
Q ss_pred EeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 429 ASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 429 is~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
|.+.+..|++|+|+++++|++++++.
T Consensus 946 ~~Ppl~it~~~id~~~~~l~~~l~~~ 971 (972)
T PRK06149 946 IKPPLCLDRESADFFVDMLDRVLTEG 971 (972)
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHhh
Confidence 99998899999999999999998753
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=153.06 Aligned_cols=295 Identities=12% Similarity=0.088 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
...++++..|+.+|++. ..++++|+|.++..++.+. +.+||+|++...+|-|+..++ ...|+.+++++..
T Consensus 196 ~i~eAe~~AA~~fgAd~--tyfvvNGTS~~n~av~~a~----~~~Gd~VLvdRN~HKSv~haL----ilsga~PVYl~P~ 265 (714)
T PRK15400 196 PHKEAEEYIARVFNADR--SYMVTNGTSTANKIVGMYS----APAGSTVLIDRNCHKSLTHLM----MMSDVTPIYFRPT 265 (714)
T ss_pred HHHHHHHHHHHHhCCCc--EEEEeCchHHHHHHHHHHh----cCCCCEEEeecccHHHHHHHH----HHcCCeEEEeccc
Confidence 45678899999999984 6788999999999999887 799999999999999876543 4459999998765
Q ss_pred CC-----CCCC-----HHHHHHhhcCCc--e---EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCc--cc-
Q 012718 192 DD-----ESPD-----LDKLKEMLSRKT--K---LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPH--MV- 253 (458)
Q Consensus 192 ~~-----~~~d-----~~~l~~~l~~~~--~---~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~--~~- 253 (458)
.+ +.++ .+.+++.+...+ + .++++++ +..|.+.+++.|+++|+.++ |++|+||+.-. .+
T Consensus 266 rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~ 342 (714)
T PRK15400 266 RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (714)
T ss_pred ccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcc
Confidence 32 3445 788999886532 3 6777777 77999999999999999887 68999988321 11
Q ss_pred C-CCCC--CCC---c--EEEecccCCCC-CCceeEEEEecccc-ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCC
Q 012718 254 V-DVQG--LDA---D--FLVASSHKMCG-PTGIGFLFGKSDLL-SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPA 323 (458)
Q Consensus 254 ~-~~~~--~~~---d--~~~~s~~K~~g-p~g~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~ 323 (458)
+ +... .+. | +++-|.||.++ ....+++.++..+- +++...+ ..+.+.+|+
T Consensus 343 ~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~a~--------------------~m~~STSPs 402 (714)
T PRK15400 343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAY--------------------MMHTTTSPH 402 (714)
T ss_pred cCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHHHH--------------------HHHcCCCcH
Confidence 1 0111 223 5 89999999654 56577776644310 1111110 134467899
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC------EEEeCCCCC----------------Cc-----
Q 012718 324 IGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN------IRIYGPKPS----------------EH----- 376 (458)
Q Consensus 324 ~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~------~~~~~~~~~----------------~~----- 376 (458)
+..++++..+..++....-.++.+...+++..+++.|.++++ +++..+... ..
T Consensus 403 Y~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~ 482 (714)
T PRK15400 403 YGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNE 482 (714)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCccccccc
Confidence 999999999999887533356667777888888888877766 665532210 00
Q ss_pred -Ccccc-EEEEEeC-----------CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHH
Q 012718 377 -VQRAA-LCSFNVE-----------NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEF 443 (458)
Q Consensus 377 -~~~~~-~v~~~~~-----------~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l 443 (458)
..--+ =+++..+ |++...+.+.|.++ ||.+.-.. ...+=+-+++..|.+++++|
T Consensus 483 ~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~-gI~~E~~d------------~~~iLfl~s~g~t~~~~~~L 549 (714)
T PRK15400 483 HMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEH-GIVVEKTG------------PYNLLFLFSIGIDKTKALSL 549 (714)
T ss_pred ccccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHHc-CCEEEecC------------CCeEEEEeCCCCCHHHHHHH
Confidence 00011 1333333 34566788899777 99874222 45666777777999999999
Q ss_pred HHHHHHHHH
Q 012718 444 IHALNETVS 452 (458)
Q Consensus 444 ~~~l~~~~~ 452 (458)
+++|.++-+
T Consensus 550 ~~aL~~f~~ 558 (714)
T PRK15400 550 LRALTDFKR 558 (714)
T ss_pred HHHHHHHHH
Confidence 999988744
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-15 Score=144.77 Aligned_cols=340 Identities=12% Similarity=0.090 Sum_probs=202.8
Q ss_pred CeEEecCC------CCCCCcHHHHH--HHHHHHHHhcc-CCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCC
Q 012718 67 KLVYLDNA------ATSQKPIAVLK--ALQNYYEAYNS-NVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKN 137 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~~--a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g 137 (458)
+.-|+|.. ..|.-.+.+.+ ++.+.+.+... .+... .. ..+...++-+.|+++.+-+..+.|.|++|
T Consensus 44 G~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~-~~----~~~~~~~la~~l~~~~~p~~~~~v~f~~S 118 (443)
T PRK08297 44 GRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNS-DV----YTVEMARFVDTFARVLGDPELPHLFFVDG 118 (443)
T ss_pred CCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccC-Cc----CCHHHHHHHHHHHhhcCCCCCCEEEEeCc
Confidence 44566642 34567788888 88888866421 11100 01 12233445566767663122238999999
Q ss_pred hhHHHHHHHHHcCCC--------CC--CCCCEEEEcCCCCccchHHHHHHHHHc----C-CeE---EEEeCCC------C
Q 012718 138 ATEAINLVAYSWGLS--------NL--KSGDEVILTVAEHHSAIVPWQLVAQKT----G-ANL---KFLNLND------D 193 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~--------~~--~~g~~vl~~~~~~~s~~~~~~~~a~~~----g-~~~---~~v~~~~------~ 193 (458)
|++|++.+++..+.. .. ..+.+|+....+||+.......+.... + ... ..++... +
T Consensus 119 GsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (443)
T PRK08297 119 GALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPG 198 (443)
T ss_pred hHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcc
Confidence 999999999876321 00 124689999999998765444332100 0 000 0011000 0
Q ss_pred CC---------CCHHHHHHhhc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc---
Q 012718 194 ES---------PDLDKLKEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--- 253 (458)
Q Consensus 194 ~~---------~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--- 253 (458)
.. -+++.+++.+. .++.+|+++.++...|.+.| +++|.++|++||+++|.|+++. +|...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 278 (443)
T PRK08297 199 EDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAW 278 (443)
T ss_pred cccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHH
Confidence 00 02345566664 46799999999999998765 8999999999999999999985 44331
Q ss_pred -CCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHH
Q 012718 254 -VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGA 332 (458)
Q Consensus 254 -~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 332 (458)
.+.....+|+++ ++|.+++ .|++ ..+++.+.+.....+.. .-..+.+.+....++..+
T Consensus 279 a~~~~gv~PDiv~--~gK~l~~--~a~l-~~~~i~~~~~~~~~~~~----------------~~~~T~~gnpl~~aaa~a 337 (443)
T PRK08297 279 AYQQLGVRPDIVA--FGKKTQV--CGIM-AGRRVDEVEDNVFAVSS----------------RINSTWGGNLVDMVRARR 337 (443)
T ss_pred HHHhcCCCCCEEE--ecccccc--ccee-cchHHHHhhhhhccCcc----------------ccCCCCCccHHHHHHHHH
Confidence 111233589997 6886532 2333 33332111110000000 001122346666666667
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEe
Q 012718 333 AIDYLSTIGMQKIHAYEMELAKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVAT 407 (458)
Q Consensus 333 al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~ 407 (458)
+|+.+.+ +.+.++.+++.+++.+.|+++ +.+- ... ...+.++.+.+.+. ....+.+.+.++ ||.+
T Consensus 338 ~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~~-~~v-----rg~G~~~~i~~~~~~~~~~~~~~l~~~-Gvl~ 407 (443)
T PRK08297 338 ILEVIEE---DGLVENAARQGEYLLARLEELAAEFPAVV-SNV-----RGRGLMCAFDLPTTADRDEVIRRLWEE-GVLV 407 (443)
T ss_pred HHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHCCCcc-eee-----eccceEEEEEecCHHHHHHHHHHHHHC-CEEE
Confidence 7777765 345566666777776666543 3221 011 12366788887642 235678888877 9998
Q ss_pred ccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 408 RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 408 ~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.. ...+|+++++.+|++|+++++++|+++++++
T Consensus 408 ~~~~------------~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 408 LPCG------------ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred ecCC------------CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 6532 3579999999899999999999999998765
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-15 Score=147.64 Aligned_cols=294 Identities=13% Similarity=0.095 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
...++++..|+.+|++. ..++++|+|.++..++.+. +++||+|++...+|-|++.++ ...|+.+++++..
T Consensus 196 ~i~eAe~~aA~~fgAd~--tyfvvNGTS~~n~av~~a~----~~~Gd~VLvdRN~HKSv~~aL----ilsga~PVYl~P~ 265 (713)
T PRK15399 196 PHLEAEEYIARTFGAEQ--SYIVTNGTSTSNKIVGMYA----APAGSTLLIDRNCHKSLAHLL----MMSDVVPIWLKPT 265 (713)
T ss_pred HHHHHHHHHHHHhCCCc--EEEEeCChHHHHHHHHHHh----cCCCCEEEeecccHHHHHHHH----HHcCCeeEEeccc
Confidence 45578899999999984 6788999999999999987 899999999999999876543 4459999998765
Q ss_pred CC-----CCCCH-----HHHHHhhcCC-----ceEEEEecccCcCcccccHHHHHHHHHhcCcEE-EEeccccC--Cccc
Q 012718 192 DD-----ESPDL-----DKLKEMLSRK-----TKLVVIHHISNMLASILPIEEIVHWSHDVGAKV-LVDACQSV--PHMV 253 (458)
Q Consensus 192 ~~-----~~~d~-----~~l~~~l~~~-----~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~v-ivD~a~~~--g~~~ 253 (458)
.+ +.++. +.+++++.+. ++.++++++ +..|.+.+++.|+++| |+.+ ++|+||+. ...|
T Consensus 266 ~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p 341 (713)
T PRK15399 266 RNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHP 341 (713)
T ss_pred ccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCc
Confidence 32 34555 8888888652 357777777 7799999999999999 6655 69999882 1112
Q ss_pred -C-C---CCC-CCCcEE---EecccCCC-CCCceeEEEEecccc-ccCCCccccCcceEeeecCCCCCCCCCCccCCCCC
Q 012718 254 -V-D---VQG-LDADFL---VASSHKMC-GPTGIGFLFGKSDLL-SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTP 322 (458)
Q Consensus 254 -~-~---~~~-~~~d~~---~~s~~K~~-gp~g~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~ 322 (458)
+ + +.. .++|.+ +-|.||.+ +....+++.++..+- +++...+ ..+.+.+|
T Consensus 342 ~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~--------------------~m~~STSP 401 (713)
T PRK15399 342 IYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAF--------------------MMHTSTSP 401 (713)
T ss_pred ccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHH--------------------HHHcCCCc
Confidence 1 1 111 135666 88999955 467688888865321 1111111 12446789
Q ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC------EEEeCCCCC------------C---------
Q 012718 323 AIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN------IRIYGPKPS------------E--------- 375 (458)
Q Consensus 323 ~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~------~~~~~~~~~------------~--------- 375 (458)
++..++++..+.+++....-.++.+...+++..+++.+.++.+ +++..+... .
T Consensus 402 sY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~ 481 (713)
T PRK15399 402 SYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADA 481 (713)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCccccccccccc
Confidence 9999999999999887532355666667777778887776544 454432100 0
Q ss_pred -cCcccc-EEEEEeC-----------CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 376 -HVQRAA-LCSFNVE-----------NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 376 -~~~~~~-~v~~~~~-----------~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
...--+ =+++..+ |++...+.+.|.++ ||.+.-.. ...+=+-+++..+.+++++
T Consensus 482 ~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~-gI~~E~~d------------~~~vL~l~s~g~t~~~~~~ 548 (713)
T PRK15399 482 DHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDER-GIVVEKTG------------PYNLLFLFSIGIDKTKAMG 548 (713)
T ss_pred ccccCCCceEEEEecCcccccccccCCCCHHHHHHHHHHc-CCEEEecC------------CCeEEEEeCCCCCHHHHHH
Confidence 000012 1333333 45677888999877 99874222 4456666676799999999
Q ss_pred HHHHHHHHHH
Q 012718 443 FIHALNETVS 452 (458)
Q Consensus 443 l~~~l~~~~~ 452 (458)
|+++|.++-+
T Consensus 549 L~~aL~~f~~ 558 (713)
T PRK15399 549 LLRGLTEFKR 558 (713)
T ss_pred HHHHHHHHHH
Confidence 9999988744
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-15 Score=137.78 Aligned_cols=330 Identities=14% Similarity=0.113 Sum_probs=212.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC----------CCCEEEEcCCCCccch
Q 012718 102 IHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK----------SGDEVILTVAEHHSAI 171 (458)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~----------~g~~vl~~~~~~~s~~ 171 (458)
.+...+.+....+++.....+..|-+...+-+|++||+-++..++...+...+. |.-.+.+++.+|+|+
T Consensus 132 TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi- 210 (510)
T KOG0629|consen 132 TYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSI- 210 (510)
T ss_pred eEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhH-
Confidence 333444455556677788888888886447789999988888887765321111 111455677888865
Q ss_pred HHHHHHHHHcC---CeEEEEeCCCCCCCCHHHHHHhhcC---C---ceEEEEecccCcCcccccHHHHHHHHHhcCcEEE
Q 012718 172 VPWQLVAQKTG---ANLKFLNLNDDESPDLDKLKEMLSR---K---TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 172 ~~~~~~a~~~g---~~~~~v~~~~~~~~d~~~l~~~l~~---~---~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
.+.|...| -+++.|+.++.|.+++++|+++|-. + +.+|..+..++..|...|+..|+++|++|++|++
T Consensus 211 ---~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmH 287 (510)
T KOG0629|consen 211 ---KKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMH 287 (510)
T ss_pred ---HHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEE
Confidence 55566667 6899999999999999999999854 2 5788899999999999999999999999999999
Q ss_pred EeccccCCcccCC------CCCC-CCcEEEecccCCCC-CCceeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCC
Q 012718 243 VDACQSVPHMVVD------VQGL-DADFLVASSHKMCG-PTGIGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADP 313 (458)
Q Consensus 243 vD~a~~~g~~~~~------~~~~-~~d~~~~s~~K~~g-p~g~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~ 313 (458)
||++-+.|.+ ++ +... .++.++.+.||+.| |--|+.+..+.+- +......-..+-...+..+ ...|...
T Consensus 288 vDAAwGGglL-mS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Y-dvS~DTg 365 (510)
T KOG0629|consen 288 VDAAWGGGLL-MSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFY-DVSYDTG 365 (510)
T ss_pred eecccccccc-cChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCcee-ecccccc
Confidence 9999887765 22 1111 38999999999766 6668888888753 2222211110000011110 0122333
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC-----
Q 012718 314 PSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE----- 388 (458)
Q Consensus 314 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~----- 388 (458)
....+.|... .++-++..++-....|+++..+++.++++|+.+.|++.+++..+..... ....++|...
T Consensus 366 dK~iQCGRh~--D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~p----e~~nv~fw~vp~~lR 439 (510)
T KOG0629|consen 366 DKAIQCGRHV--DVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEP----EHVNVCFWYVPPSLR 439 (510)
T ss_pred cchhhcCccc--cHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCC----ceEEEeeccCchHhc
Confidence 3344444332 2344554555555668999999999999999999999988776554321 1345555432
Q ss_pred CCC------------hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHH
Q 012718 389 NIH------------PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH-FYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 389 ~~~------------~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~ 451 (458)
++. ...+-..+.++ |-... |.. |+ -..++++|+.++ +..+.+|+|.+++-|..+=
T Consensus 440 ~~~~~~e~~~rL~kVaPkIK~~Mm~~-Gt~Mi-~Yq---Pl---~~~~nffr~v~sn~a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 440 GWQENPERDSRLVKVAPKIKERMMKK-GTTMI-GYQ---PL---GDKPNFFRMVISNPALTEADLDFLLDEIERLG 507 (510)
T ss_pred cCcccchhhhHHHhhCcHHHHHHHhc-cceee-Eec---cc---ccccchhheecccchhhhhhHHHHHHHHHHhc
Confidence 111 11334444444 43221 110 11 011678898765 3358899999998887653
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-15 Score=133.61 Aligned_cols=328 Identities=18% Similarity=0.214 Sum_probs=202.7
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-----CCCcEEEeCChhHHHHHHHHHcCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVFTKNATEAINLVAYSWGLSN 153 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~~v~~t~g~t~a~~~~~~~l~~~~ 153 (458)
.|..+++.....+....+. .|. +...+.++-+|+.+|+++... .+++|.+|+|++.|+..++..+.
T Consensus 87 fp~Dai~RA~~~L~~~gGs--~Ga----YS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~--- 157 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDCGGS--LGA----YSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLI--- 157 (475)
T ss_pred CCHHHHHHHHHHHHhcCCc--ccc----cccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHh---
Confidence 5566666666666654331 122 334567778899999998543 12499999999999999999884
Q ss_pred CCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcC-----CceEEEEecccCcCccccc
Q 012718 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSR-----KTKLVVIHHISNMLASILP 226 (458)
Q Consensus 154 ~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~-----~~~~v~~~~~~n~tG~~~~ 226 (458)
..+++.|+++-|-|+ -+..-....|...+.+-+++ +|.+|.++|++.+++ +++++++.+|.||||.+.+
T Consensus 158 ~~~~~GvliPiPQYP----LYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls 233 (475)
T KOG0258|consen 158 AGKKTGVLIPIPQYP----LYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLS 233 (475)
T ss_pred cCCCCceEeecCCCc----hhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhc
Confidence 457889999999998 33333344577766666664 488999999888765 6799999999999999998
Q ss_pred ---HHHHHHHHHhcCcEEEEecccc-----CCc-------ccCCCCCCCC-c---EEEecccC-CCCCCc--eeEEEE--
Q 012718 227 ---IEEIVHWSHDVGAKVLVDACQS-----VPH-------MVVDVQGLDA-D---FLVASSHK-MCGPTG--IGFLFG-- 282 (458)
Q Consensus 227 ---l~~i~~l~~~~~~~vivD~a~~-----~g~-------~~~~~~~~~~-d---~~~~s~~K-~~gp~g--~G~l~~-- 282 (458)
+++|.++|+++++.++.|++|- .+. ....+..... . +...|.|| .+|=.| .|++=+
T Consensus 234 ~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n 313 (475)
T KOG0258|consen 234 EENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLN 313 (475)
T ss_pred HHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeeccc
Confidence 8899999999999999999975 110 0111222222 2 23337778 443222 444432
Q ss_pred -eccccccCC--------CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012718 283 -KSDLLSAMP--------PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353 (458)
Q Consensus 283 -~~~~~~~l~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~ 353 (458)
.++..+.+. +...|--...- ... .-..|.+++ +.... ..+.+.+.++..+
T Consensus 314 ~~prv~~qi~Kl~si~lc~~V~GQ~~vdl------~Vn----PP~Pgd~Sy----------~~~~~-Ekd~il~~l~~ra 372 (475)
T KOG0258|consen 314 RDPRVKQQIKKLASIKLCPQVSGQKLVDL------VVN----PPKPGDPSY----------DLFSS-EKDGILSSLRSRA 372 (475)
T ss_pred CChhHHHHHHHHHhhhhcCCccchhhhce------ecC----CCCCCCcch----------hhhhh-hhHhHHHHHHHHh
Confidence 233222211 11111000000 000 000122332 11111 1467778888899
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE---eC----------CCChHH-HHHHHhhhcCeEeccCCCCChhhHh
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN---VE----------NIHPTD-IATLLDQQYGVATRSGHHCAQPLHR 419 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~---~~----------~~~~~~-~~~~l~~~~gi~~~~g~~~~~~~~~ 419 (458)
+.+.+.+++++|+.+..+. |.+..|. +| +..++. .+..|.+..||.+.||+-+....
T Consensus 373 ~l~~~~~ns~~gi~cn~~q-------GAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~-- 443 (475)
T KOG0258|consen 373 KLTEDAFNSLEGISCNPVQ-------GAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKE-- 443 (475)
T ss_pred HHHHHHHhhcCceeeccCc-------cceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCC--
Confidence 9999999999999998776 6666663 22 222233 34455555599999998543321
Q ss_pred hcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 420 YLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 420 ~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+...+|..+-+-. .+-|+++.+.-.+++.+
T Consensus 444 ---GtyH~R~TiLp~~-~~~i~~~~~fH~~f~~~ 473 (475)
T KOG0258|consen 444 ---GTYHFRTTILPPG-LEIIEKFKKFHAEFMDE 473 (475)
T ss_pred ---ceeEEEEeecCch-hHHHHHHHHHHHHHHHh
Confidence 1457998876533 35666666666665554
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-14 Score=138.40 Aligned_cols=294 Identities=18% Similarity=0.170 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
...++.+..|+.+|++. ..++++|+|.|+..+..+. +.+||+|++...+|-|+..++. ..|+.++++...
T Consensus 71 ~i~eAqe~aA~~fgAd~--tyFvvNGTS~ank~vi~a~----~~~GD~VLvdRN~HKSi~~gli----laGa~Pvyl~p~ 140 (557)
T COG1982 71 PIKEAQELAARVFGADH--TYFVVNGTSTANKAVINAV----LTPGDKVLVDRNCHKSIHHGLI----LAGATPVYLEPS 140 (557)
T ss_pred cHHHHHHHHHHHhCCCc--eEEEECCccHHHHHHHHhh----cCCCCEEEecCCccHHHHHHHH----HcCCceEEecCC
Confidence 45578899999999984 6788999999999999988 8999999999999999876533 349999988765
Q ss_pred CC------CCCCHHHHHHhhcC--Cc-eEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCc-----ccCCCC
Q 012718 192 DD------ESPDLDKLKEMLSR--KT-KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPH-----MVVDVQ 257 (458)
Q Consensus 192 ~~------~~~d~~~l~~~l~~--~~-~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~-----~~~~~~ 257 (458)
.+ +.++.+.+++.+.+ .. +++++.++ +..|.+.++++|.+.+++.++|+.+|++|..-. .+..-.
T Consensus 141 ~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnp-TYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~ 219 (557)
T COG1982 141 RNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNP-TYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESAL 219 (557)
T ss_pred CCccccccCCCCHHHHHHHHHhChhhheeEEEecC-ccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhh
Confidence 33 57899999887655 33 67777776 669999999999999999999999999998422 222122
Q ss_pred CCCCcEEEecccCCCC-CCceeEEEEecc-cc--ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHH
Q 012718 258 GLDADFLVASSHKMCG-PTGIGFLFGKSD-LL--SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA 333 (458)
Q Consensus 258 ~~~~d~~~~s~~K~~g-p~g~G~l~~~~~-~~--~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 333 (458)
+.+.|+++-|.||.++ ..-..++.+++. .+ +++...+ ..+.+.+|++..++++..|
T Consensus 220 ~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~--------------------~~h~STSPsY~l~ASlD~A 279 (557)
T COG1982 220 NGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEAL--------------------MMHQSTSPSYPLMASLDVA 279 (557)
T ss_pred hcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHH--------------------HHHccCCchHHHHHHHHHH
Confidence 3568999999999665 555778877763 11 1111111 1234567888888888776
Q ss_pred HHHHHHhCHHHH---HHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCc--------------ccc-EEEEEe--CCCChH
Q 012718 334 IDYLSTIGMQKI---HAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQ--------------RAA-LCSFNV--ENIHPT 393 (458)
Q Consensus 334 l~~~~~~g~~~~---~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~--------------~~~-~v~~~~--~~~~~~ 393 (458)
-.+....|.... .+...+.++.+.+....++++.+..+....... --| =+.+.. .|++..
T Consensus 280 r~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~ 359 (557)
T COG1982 280 RMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGA 359 (557)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHH
Confidence 666655554432 566677788888888888778877665310000 012 133343 267889
Q ss_pred HHHHHHhhhcCeEec-cCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 394 DIATLLDQQYGVATR-SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 394 ~~~~~l~~~~gi~~~-~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
.+.++|.++ ||... .+.+ ...+=+++....+..+++.|++.++
T Consensus 360 ~v~~~L~e~-gii~e~~~d~-----------~~lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 360 IVAKYLREH-GIIPEETGDY-----------SNLLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred HHHHHHHHc-CCeeeecCCc-----------eeeEEeeeccchHHHHHHHHHHHHH
Confidence 999999998 76553 2221 1233344443356778888887776
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-13 Score=143.14 Aligned_cols=338 Identities=12% Similarity=0.081 Sum_probs=205.5
Q ss_pred EEecCCC------CC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 69 VYLDNAA------TS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 69 i~l~~~~------~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
-|||..+ .| ...+++.+++.+.+.++..... . +. ..+...++-+.|++..+.+.-..|+|++||++|
T Consensus 366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~--~---~~-~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeA 439 (817)
T PLN02974 366 QQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVMF--P---EN-VHEPALRAAELLLGGPGKGWASRVFFSDNGSTA 439 (817)
T ss_pred eEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCcccc--C---cc-CCHHHHHHHHHHHhccCCCCCCEEEECCchHHH
Confidence 5666543 33 3478899999888876422110 0 00 122223455556665442212389999999999
Q ss_pred HHHHHHHcCC-C----CCC------------CCCEEEEcCCCCccchHHHHHHHHHc---C---Ce-----EEEEeCC--
Q 012718 142 INLVAYSWGL-S----NLK------------SGDEVILTVAEHHSAIVPWQLVAQKT---G---AN-----LKFLNLN-- 191 (458)
Q Consensus 142 ~~~~~~~l~~-~----~~~------------~g~~vl~~~~~~~s~~~~~~~~a~~~---g---~~-----~~~v~~~-- 191 (458)
++.++....+ . ... .+.+|+....+||+.+.....+.... + .. ...++..
T Consensus 440 vE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~ 519 (817)
T PLN02974 440 IEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTV 519 (817)
T ss_pred HHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCcc
Confidence 9999886521 1 010 24579999999999877665543210 0 00 0111100
Q ss_pred ------------CCC---------C-------CC------------HHHHHHhhc--------CCceEEEEecc-cCcCc
Q 012718 192 ------------DDE---------S-------PD------------LDKLKEMLS--------RKTKLVVIHHI-SNMLA 222 (458)
Q Consensus 192 ------------~~~---------~-------~d------------~~~l~~~l~--------~~~~~v~~~~~-~n~tG 222 (458)
... . +| .+.+++.|. +++.+|+++.+ +...|
T Consensus 520 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGG 599 (817)
T PLN02974 520 GMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGG 599 (817)
T ss_pred ccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCC
Confidence 000 0 00 144566554 25688888885 78789
Q ss_pred cccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCcEEEecccCCC-CC-CceeEEEEeccccccCC
Q 012718 223 SILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADFLVASSHKMC-GP-TGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 223 ~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d~~~~s~~K~~-gp-~g~G~l~~~~~~~~~l~ 291 (458)
++.+ ++.+.++|++||+++|.|+++. +|..- + +.....+|+++ +.|.+ |+ -.+|.+++++++.+.+.
T Consensus 600 mi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~--~gKgLtgG~~Plaa~l~~~~I~~~f~ 677 (817)
T PLN02974 600 MLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIAC--YAKLLTGGLVPLAATLATEEVFEAFR 677 (817)
T ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEe--ecccccCCCCccEEEEEcHHHHHhhc
Confidence 8886 8899999999999999999987 33221 1 22234489999 77944 44 25899999998876653
Q ss_pred C-ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHH----hcCCC
Q 012718 292 P-FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENL----LSIPN 365 (458)
Q Consensus 292 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L----~~~~~ 365 (458)
. ...+... . -.+.+.+....++..++|+.+.+.+ .+.+.++..++.+++.+.| .++|.
T Consensus 678 ~~~~~~~~~---------------h-g~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~ 741 (817)
T PLN02974 678 GPSKLDALL---------------H-GHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPN 741 (817)
T ss_pred cccccCCcc---------------c-CCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 1 0000000 0 0123567777778888888887753 2355555556666555554 33433
Q ss_pred EEEeCCCCCCcCccccEEEEEeCCCC---------hHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVENIH---------PTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
+. .. ...|.++.+.+.... ...+.+.+. ++ |+.+++. .+.+|+.+++.+
T Consensus 742 V~---~V----Rg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~-Gl~~r~~-------------Gnvi~l~pP~~i 800 (817)
T PLN02974 742 VE---RV----VSLGTVLALELDAEGSGSGYSSLYARSVVRRLRRED-GIYARPL-------------GNVVYLMCGPTT 800 (817)
T ss_pred ee---EE----EeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhC-CEEEEec-------------CCEEEEeCCCCC
Confidence 22 11 123557777774211 235677777 77 9999753 258999999889
Q ss_pred CHHHHHHHHHHHHHHH
Q 012718 436 TKEDVDEFIHALNETV 451 (458)
Q Consensus 436 t~~di~~l~~~l~~~~ 451 (458)
++++++++++.|.+.+
T Consensus 801 ~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 801 SPETCTRLLRKVYRRL 816 (817)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998876
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-13 Score=120.33 Aligned_cols=347 Identities=17% Similarity=0.192 Sum_probs=223.7
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCC-cchhhhHHHHHHHH-HHHHHHHHcCCCCCC-cE-EEeCChhHHHHHHHHHcCCCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRG-IHFLSAKATDEYEL-ARKKVAAFINASDSG-EI-VFTKNATEAINLVAYSWGLSN 153 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~la~~~g~~~~~-~v-~~t~g~t~a~~~~~~~l~~~~ 153 (458)
-...++++++-..+.+.+..-..| .++.|.++....|. .+++..+.++++++. .| |-.-||+-|+..+..++
T Consensus 51 Fts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtal---- 126 (477)
T KOG2467|consen 51 FTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTAL---- 126 (477)
T ss_pred chHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhh----
Confidence 467889999998887643332223 33344556666665 567778999999764 33 34458888999999888
Q ss_pred CCCCCEEEEc---CCCCccchHHHHHHHHHcCCeEE-----EEeCCC-CCCCCHHHHHHhhcC-CceEEEEecccCcCcc
Q 012718 154 LKSGDEVILT---VAEHHSAIVPWQLVAQKTGANLK-----FLNLND-DESPDLDKLKEMLSR-KTKLVVIHHISNMLAS 223 (458)
Q Consensus 154 ~~~g~~vl~~---~~~~~s~~~~~~~~a~~~g~~~~-----~v~~~~-~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~ 223 (458)
++|+++|+-. +.+|-++ ++..-.++..+.-+ .+.+++ .|.||.+.|++.... ++++|+.-. +..-.
T Consensus 127 l~Ph~RiMGLDLP~GGHLsH--Gy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~--SaY~R 202 (477)
T KOG2467|consen 127 LKPHERIMGLDLPSGGHLSH--GYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGT--SAYSR 202 (477)
T ss_pred cCCCCeeeeccCCCCCcccc--ccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEecc--ccchh
Confidence 8999999854 4455444 23322121122211 223343 488999999876544 788777533 23456
Q ss_pred cccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccC
Q 012718 224 ILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGG 297 (458)
Q Consensus 224 ~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~ 297 (458)
.+|..++.++|.+.|+.+++|-+|-.|.+ |-.++ .+|+|+.+.|| +-||. .|+++.|+.+...- +-. |-
T Consensus 203 ~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFe--y~DiVTTTTHKsLRGPR-g~mIFyRkGvk~~~-~k~-g~ 277 (477)
T KOG2467|consen 203 LIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFE--YCDIVTTTTHKSLRGPR-GAMIFYRKGVKSIK-PKQ-GK 277 (477)
T ss_pred hccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccc--ccceeeccccccccCCc-ceeEEEeccCCcCC-CCC-CC
Confidence 67789999999999999999999974433 32232 28999999999 67888 48888888552211 100 00
Q ss_pred cceEeeecCCCCCCCCCCccC--CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Q 012718 298 EMISDVFLDHSTFADPPSRFE--AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE 375 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~--~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~ 375 (458)
. ..++..+ .-...-|- .|.|....+.+++.+|+....-.+..+++++.++++.|.+.|.+. |+++....-.
T Consensus 278 ~----i~ydlE~-kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTD- 350 (477)
T KOG2467|consen 278 E----ILYDLED-KINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKLVTGGTD- 350 (477)
T ss_pred c----ceechhh-hhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceEecCCcc-
Confidence 0 0000000 00001111 466777789999999998888788999999999999999999988 9998766432
Q ss_pred cCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC----CHHHHHHHHHHHHH
Q 012718 376 HVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN----TKEDVDEFIHALNE 449 (458)
Q Consensus 376 ~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~----t~~di~~l~~~l~~ 449 (458)
..++.+.+. +++...+.+.+..- +|.+.-...+.... .+ .++.+|+.....+ .++|.++..+.|.+
T Consensus 351 ----nHlvLvDLr~~G~dGarvE~vle~~-~I~~NKNtvpGD~S--al-~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~ 422 (477)
T KOG2467|consen 351 ----NHLVLVDLRPKGVDGARVEKVLELC-HIALNKNTVPGDKS--AL-SPGGIRIGTPAMTSRGFGEEDFEKVADFIDR 422 (477)
T ss_pred ----ceEEEEeccccCCchHHHHHHHHHh-hhhhcCCcCCCCcc--cc-CCCceeccchhhcccCccHHHHHHHHHHHHH
Confidence 235555554 66666665555544 77654222111100 11 1789999866545 56899999999988
Q ss_pred HHH
Q 012718 450 TVS 452 (458)
Q Consensus 450 ~~~ 452 (458)
.++
T Consensus 423 av~ 425 (477)
T KOG2467|consen 423 AVK 425 (477)
T ss_pred HHH
Confidence 875
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-13 Score=140.66 Aligned_cols=341 Identities=14% Similarity=0.103 Sum_probs=226.1
Q ss_pred EEecCCCCCC-CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 69 VYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 69 i~l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
.|+..|.... .|..+.+.+.+.-..+-.+. ...-..+.+.-+.+-+.+..++++.|.+-. +--+-.++|.+-+.+++
T Consensus 82 ~fiG~G~y~~~~P~vi~~~i~~~~~~yTaYT-PYQpEisQG~Lqal~e~Qtmi~~LtGm~va-NASl~D~atA~aEA~~m 159 (954)
T PRK12566 82 SLIGMGYHGTVTPTVILRNVLENPGWYTAYT-PYQPEIAQGRLEALLNFQQMTIDLTGLDLA-NASLLDEATAAAEAMAL 159 (954)
T ss_pred ccccccccCCcCcHHHHHHHHhCchhhhcCC-CCCchhhhHHHHHHHHHHHHHHHHhCchhh-hhhhccchhHHHHHHHH
Confidence 4555555553 45544365554322221111 112223445566777899999999999843 44455666666665554
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
+.+. .-.++.+|++++..|+.....++..++..|++++. +++++.+++++..+++..| |..|.+.++
T Consensus 160 a~~~-~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-----------~~~~~~~~~~~~~v~vq~P-~~~G~i~d~ 226 (954)
T PRK12566 160 AKRV-AKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-----------DAVDNLAAHAVFGALLQYP-DTHGEIRDL 226 (954)
T ss_pred HHHH-hhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-----------cchhhcCCCCEEEEEEECC-CCceEEccH
Confidence 4421 11225689999999999888888888888988875 2344456667888888888 679999999
Q ss_pred HHHHHHHHhcCcEEEEecccc--CCcccCCCCCCCCcEEEecccCC-----CCCCceeEEEEeccccccCCCccccCcce
Q 012718 228 EEIVHWSHDVGAKVLVDACQS--VPHMVVDVQGLDADFLVASSHKM-----CGPTGIGFLFGKSDLLSAMPPFLGGGEMI 300 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~--~g~~~~~~~~~~~d~~~~s~~K~-----~gp~g~G~l~~~~~~~~~l~~~~~g~~~~ 300 (458)
++|.+++|++|++++ +++.- ++.+ -...++|+|+++++.+-+ ||+++.|++.++++..+.++..+.|-..-
T Consensus 227 ~~i~~~~h~~gal~~-~~~d~laL~ll-~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D 304 (954)
T PRK12566 227 RPLIDQLHGQQALAC-VAADLLSLLVL-TPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRD 304 (954)
T ss_pred HHHHHHHHHcCCEEE-EEeCHHHHhCC-CChhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeec
Confidence 999999999999855 44433 3333 245688999999988754 45555999999999888888555432221
Q ss_pred E----eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH-----HHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 301 S----DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID-----YLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 301 ~----~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~-----~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
. ...+....-.. ..|-+..|.|.....++.+... ++...|+.++.+++..++.+|.+.|.+ .|+++...
T Consensus 305 ~~G~~a~~l~LqtREQ-HIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~~ 382 (954)
T PRK12566 305 ARGNTALRMALQTREQ-HIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEA-KGIKRLNR 382 (954)
T ss_pred CCCCeeeehhhhHHHH-HhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh-cCCccccC
Confidence 1 00011111111 1355566777755555544433 444568999999999999999999998 48887544
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
. . --.+.+++.. ...++.+...++ ||.++--. .+.+.||+.-.++.+|++.++..+.
T Consensus 383 ~-f-----F~~~~v~~~~-~~~~~~~~a~~~-~~n~r~~~------------~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 383 H-F-----FDTLTLEVGG-AQAAIIESAEAA-RINLRILG------------RGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred C-c-----cceEEEEccC-CHHHHHHHHHHC-CCeeEEeC------------CCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 2 1 2245555532 467788887777 98886322 5679999998899999999999884
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-13 Score=123.78 Aligned_cols=328 Identities=15% Similarity=0.130 Sum_probs=208.3
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
.+.-|||.- +.|-.-+.+.+++.+.+..++.... .+. .+-..++-+.|++.+..+-. .+.|++||+
T Consensus 48 ~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~---~~~----~~pi~~~Ae~L~s~~P~~l~-~vfF~nsGs 119 (442)
T KOG1404|consen 48 EGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTS---GYL----NPPIHDLAEALVSKLPGDLK-VVFFVNSGS 119 (442)
T ss_pred CCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeec---ccc----CCcHHHHHHHHHHhCCCCce-EEEEecCCc
Confidence 556677753 2456778899999888866543221 111 22233455666666655443 789999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-----------CC-------C---CCCH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-----------DD-------E---SPDL 198 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-----------~~-------~---~~d~ 198 (458)
+|+++++...+. ....-.|+....+||++......+ .|.....-+.+ ++ + +...
T Consensus 120 EANelal~mar~--Yt~~~diIa~r~~YHG~t~~t~gl---t~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~ 194 (442)
T KOG1404|consen 120 EANELALKMARL--YTGNLDIIARRNSYHGNTLYTLGL---TGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEAS 194 (442)
T ss_pred hHHHHHHHHHHH--hcCCceEEEeeccccCCchhhccc---ccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhH
Confidence 999999987642 344457888889999875332222 12211111110 11 0 0012
Q ss_pred HH----HHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc----CCcccCCCCCCC--
Q 012718 199 DK----LKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS----VPHMVVDVQGLD-- 260 (458)
Q Consensus 199 ~~----l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~----~g~~~~~~~~~~-- 260 (458)
+. ++..+. +.++.++.+.++...|.+.+ +++..++|+++|.++|.|++|. .|++ +.++..+
T Consensus 195 d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~-wgfe~h~v~ 273 (442)
T KOG1404|consen 195 DRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHM-WGFESHGVV 273 (442)
T ss_pred HHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccccc-ccccccCCC
Confidence 22 222322 24588899999998998886 8999999999999999999997 3433 3444444
Q ss_pred CcEEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 261 ADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 261 ~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
+|+++ +.|. .+...+|.++..+++.+.+..-.. .|..-..++...++..+.|+.+++
T Consensus 274 PDIvT--mAKgiGnG~Pl~AVvtt~EIa~v~~~~~~--------------------~fnTyggnP~a~avg~aVL~Vike 331 (442)
T KOG1404|consen 274 PDIVT--MAKGIGNGFPLGAVVTTPEIADVLNQKSS--------------------HFNTYGGNPVACAVGLAVLKVIKE 331 (442)
T ss_pred ccHHH--HHhhccCCCcceeeecCHHHHHHHHhccc--------------------cccccCCCchhHHHHHHHHHHHHH
Confidence 67765 8894 445669999999987665543221 122222333334444466666665
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcC-CCEEEeCCCCCCcCccccEEEEEeCCC----------ChHHHHHHHhhhcCeEec
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSI-PNIRIYGPKPSEHVQRAALCSFNVENI----------HPTDIATLLDQQYGVATR 408 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~l~~~~gi~~~ 408 (458)
++++++..+...+|.+.|.++ ....+.+.. ..+|-++-+.+-+. ....+.+...+. |+.+.
T Consensus 332 ---e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdV----RG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~-Gvlvg 403 (442)
T KOG1404|consen 332 ---ENLQENAAEVGSYLLEKLAALKDKHPIIGDV----RGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKEL-GVLVG 403 (442)
T ss_pred ---HhHHHHHHHHHHHHHHHHHHHhhcCCceeec----ccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHh-Ceeee
Confidence 788889999999999999876 245555554 34455666665321 123566677777 99985
Q ss_pred cCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 409 SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 409 ~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
-|... ...+||++..+.|.+|+|.+++..
T Consensus 404 ~g~i~----------G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 404 KGGIH----------GNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred ccccc----------ceEEEecCCeeccHHHHHHHHHHH
Confidence 55422 348999999999999998887765
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-13 Score=131.86 Aligned_cols=324 Identities=13% Similarity=0.067 Sum_probs=181.4
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.+...... . + ......++-+.|++++... +.+.|+++|+
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~---~-~-----~~~~~~~la~~l~~~~p~~--~~v~f~~sGs 114 (431)
T PRK06209 46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCNF---T-R-----PSAIELDAAESFLELIDGA--DMVKFCKNGS 114 (431)
T ss_pred CCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcCC---C-C-----CCHHHHHHHHHHHHhCCcc--ceEEEecCHH
Confidence 344556542 34567789999999988764211 0 0 1122224566677776422 3899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEc-CCCCccchHHHHHHH-HHcCC------eEEEEeCCCCCCCCHHHHHHhhcC---C
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILT-VAEHHSAIVPWQLVA-QKTGA------NLKFLNLNDDESPDLDKLKEMLSR---K 208 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~-~~~~~s~~~~~~~~a-~~~g~------~~~~v~~~~~~~~d~~~l~~~l~~---~ 208 (458)
+|++.+++..+ ....+.+|+.. ...|++....+.... ...|. .+..++ .-|++.+++.++. +
T Consensus 115 eA~e~AlklAr--~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~ 187 (431)
T PRK06209 115 DATSAAVRLAR--AYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR-----YNDIASLEALFEDHPGR 187 (431)
T ss_pred HHHHHHHHHHH--HHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC-----CCCHHHHHHHHHhCCCC
Confidence 99999998653 23344566665 344543211110000 00010 011111 1278899888853 5
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccC--CC---CCCCCcEEEecccCCCC-CCceeEEEE
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV--DV---QGLDADFLVASSHKMCG-PTGIGFLFG 282 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~--~~---~~~~~d~~~~s~~K~~g-p~g~G~l~~ 282 (458)
+.+|+++......+..-.+++|.++|++||+++|+|+++. |.... .. ....+|+++ ++|.+| +..+|++++
T Consensus 188 ~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~t-G~~~~~~g~~~~~gv~PDi~t--~gK~lggG~p~~av~~ 264 (431)
T PRK06209 188 IACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMIT-GFRWHMRGAQKLYGIVPDLSC--FGKALGNGFAVSALAG 264 (431)
T ss_pred EEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-cCCcCcchhhHHhCCCcceee--ehhhhcCCcccEEEEE
Confidence 6788887774432222228999999999999999999984 33211 01 123478755 789554 334788888
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCcc-C--CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF-E--AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++++++.+.....+. ...| . .-++++...++..++|+.+.+.+ +.++..++.+++.+.
T Consensus 265 ~~~i~~~~~~~~~~~----------------~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~ 325 (431)
T PRK06209 265 KREYMELGGLEHTDR----------------ERVFLLSTTHGAETHALAAAIATMAIYRDED---VIERLHEQGAKLAAG 325 (431)
T ss_pred HHHHHhhhcccccCC----------------CCceeeccCCCCCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHH
Confidence 887765411000000 0001 1 22456677888888888887654 445555555555555
Q ss_pred Hhc----CCCEE--EeCCCCCCcCccccEEEEEeC--CCCh----HHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeE
Q 012718 360 LLS----IPNIR--IYGPKPSEHVQRAALCSFNVE--NIHP----TDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASA 427 (458)
Q Consensus 360 L~~----~~~~~--~~~~~~~~~~~~~~~v~~~~~--~~~~----~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~l 427 (458)
|++ + ++. +..... ..++..+... +... ..+.+.+.++ |+.+. .+
T Consensus 326 L~~~~~~~-~~~~~vr~~G~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~p-----------------~l 381 (431)
T PRK06209 326 VNEAAAEH-GLQDHVRVSGR-----PCCLTYSTLDGNGQPSQAFRTLFLQETIRR-GVLMP-----------------SL 381 (431)
T ss_pred HHHHHHhC-CCCeEEEeecc-----eEEEEEecCCcccCCcHHHHHHHHHHHHHC-Ccccc-----------------cc
Confidence 543 3 221 111110 0122222111 1111 2456677777 88652 13
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 428 RASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 428 Ris~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+++ ..+|++||++++++++++++.++
T Consensus 382 ~is--~~ht~~dId~~l~~l~~~l~~~~ 407 (431)
T PRK06209 382 VVS--YAHGDADIERTIDAVHGALGVYR 407 (431)
T ss_pred ccc--ccCCHHHHHHHHHHHHHHHHHHH
Confidence 455 34799999999999999998763
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-15 Score=140.54 Aligned_cols=174 Identities=16% Similarity=0.252 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEE
Q 012718 107 AKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186 (458)
Q Consensus 107 ~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~ 186 (458)
++.....+++++.+++++|.+ ..+|+++||.|+.+++.++ +++++.|++.++.|...... .......|++++
T Consensus 25 Yg~D~~~~~l~~~i~~l~g~e---~a~f~~sGT~An~~al~~~----~~~~~~vi~~~~aHi~~~E~-ga~~~~~G~~~~ 96 (290)
T PF01212_consen 25 YGEDPTTARLEERIAELFGKE---AALFVPSGTMANQLALRAH----LRPGESVICADTAHIHFDET-GAIEELSGAKLI 96 (290)
T ss_dssp TTSSHHHHHHHHHHHHHHTSS---EEEEESSHHHHHHHHHHHH----HHTTEEEEEETTEHHHHSST-THHHHHTTCEEE
T ss_pred cCCChhHHHHHHHHHHHcCCC---EEEEeCCCChHHHHHHHHH----HhcCCceeccccceeeeecc-chhhHhcCcEEE
Confidence 344667778999999999997 6689999999999999998 68999999999987643322 223345799999
Q ss_pred EEeCCCCCCCCHHHHHHhhcC------CceEEEEecccCcC-ccccc---HHHHHHHHHhcCcEEEEecccc------CC
Q 012718 187 FLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQS------VP 250 (458)
Q Consensus 187 ~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~vivD~a~~------~g 250 (458)
.++..++|.+|+++|++.+.. ++++|++++++|.. |.+++ +++|.++||++|+.++.|++=- .+
T Consensus 97 ~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~ 176 (290)
T PF01212_consen 97 PLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALG 176 (290)
T ss_dssp EEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH
T ss_pred ECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc
Confidence 999776699999999999865 46899999998864 77887 6788999999999999999932 22
Q ss_pred cccCCCCCCCCcEEEecccCCCCCCceeEEEEecccccc
Q 012718 251 HMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 251 ~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~ 289 (458)
..+-++. .++|.+.+|++|-+|..+.++|+++++.++.
T Consensus 177 ~~~~e~~-~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~ 214 (290)
T PF01212_consen 177 VSLAEIA-AGADSVSFGGTKNGGAPGGAVLAGNKEFIAK 214 (290)
T ss_dssp HHHHHHH-TTSSEEEEETTSTT-SSSEEEEEESHHHHHH
T ss_pred ccHHHHh-hhCCEEEEEEEcccccccceEEEechHHHHH
Confidence 2222222 4599999999998887778999999986543
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-12 Score=118.70 Aligned_cols=339 Identities=17% Similarity=0.185 Sum_probs=213.3
Q ss_pred CCCeEEecCCCCC--CCcHHHHHHHHHHHHHhccCCCCCcchhh-hHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 65 SKKLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLS-AKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 65 ~~~~i~l~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
+.++++|+.+.+- .-.+.+.+.....++++... .+.+.| ++......++.+.+|+++|++. .|+...|-+ +
T Consensus 93 G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvG---sCGPrGFYGt~DvHldlE~~iakF~G~E~--aivYs~gF~-t 166 (467)
T KOG1358|consen 93 GKDVLNFASANFLGLIENEEIKEEASFTLRKYGVG---SCGPRGFYGTIDVHLDLEKRIAKFMGTED--AIVYSYGFS-T 166 (467)
T ss_pred CceeecccchhhhhhcccHHHHHHHHHHHHHhCCC---CcCCCcccccceeecccHHHHHHhhCCcc--eeeeccccc-h
Confidence 4566666655443 34566777777777765322 121111 3455666788999999999984 566666554 6
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC-------------
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK------------- 208 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------------- 208 (458)
+..++.++ .++||.|.+.+....+...+++. -.-.+.+...+ |.++++..+.+.
T Consensus 167 i~S~ipaf----sKrGDIi~~de~~nfaIq~Glql----SRS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~ 233 (467)
T KOG1358|consen 167 IESAIPAF----SKRGDIIFVDEAVNFAIQKGLQL----SRSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALT 233 (467)
T ss_pred hhhcchhh----hccCcEEEEehhhhHHHHHHHhh----hhheeEEecCC-----CHHHHHHhccCcchhhhhccccccc
Confidence 66666666 68999999988776654433322 13355555544 667776665431
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCccc---------CCCCCCCCcEEEecccCCCCCCceeE
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGF 279 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~g~G~ 279 (458)
-+.|++....-++|.+.|+.+|.++..+|...+|+|+..++|... +.+..-..|++++|+.-.++.. .|+
T Consensus 234 Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~-GgF 312 (467)
T KOG1358|consen 234 RRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASG-GGF 312 (467)
T ss_pred eEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccccccccc-Cce
Confidence 267889999999999999999999999999999999999977652 2233234899999997766544 366
Q ss_pred EEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 280 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
..++.-.+ ..+++ .|-+ -.|..+.|++...++. .++....+. +.+.+.++.....+.+.
T Consensus 313 c~G~~~i~-~hQrL-Sg~~----------------Y~fSAslPp~la~aa~-~ai~i~~~~--p~~~~~L~~k~~~~H~~ 371 (467)
T KOG1358|consen 313 CAGKSFIA-DHQRL-SGSG----------------YCFSASLPPYLAGAAI-KAILIEEWN--PEIVQPLRAKVAKFHAA 371 (467)
T ss_pred eecceeeE-eeeec-cccc----------------eeeeccCchhhhhhHH-HHHHHHhhC--cchhhhhhccccccchh
Confidence 66643321 22221 1111 1243455555433333 333333332 33666677777888888
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeCC-----CCh----HHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----IHP----TDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~----~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
|....++.+.+... +|++.+.+.+ .+. +++++....+ ++.+....+-- .......+..+||+
T Consensus 372 l~~~s~~~v~~~~~------SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~--~~e~~~~~pSiri~ 442 (467)
T KOG1358|consen 372 LSSNSGFIVSGSPE------SPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLE--KLERCPIPPSIRIC 442 (467)
T ss_pred hhcCCceEEecCcC------CceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhh--hcccCCCCCcEEEE
Confidence 88877788877654 7777777653 112 2444444445 65543211000 00111225689999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHh
Q 012718 431 LHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+....+++|++++.+.|++....
T Consensus 443 ~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 443 VSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHh
Confidence 99889999999999999988764
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-12 Score=118.71 Aligned_cols=332 Identities=18% Similarity=0.124 Sum_probs=198.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL 154 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~ 154 (458)
..+...+++.+++.+.+.+... ..........-.+.+.+.+.++....+.|.|++|||+|++.++...+....
T Consensus 69 ~~Ghanpev~ral~~q~~k~~h-------s~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~ 141 (433)
T KOG1401|consen 69 ILGHANPEVARALAEQAKKLGH-------SSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTG 141 (433)
T ss_pred ccCCCCHHHHHHHHHHHhhhee-------ccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhc
Confidence 3456678899999888776422 222122222344666667777555556999999999999999987542111
Q ss_pred C----CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC---CC----CCCCHHHHHHhhcCC---ceEEEEecccCc
Q 012718 155 K----SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---DD----ESPDLDKLKEMLSRK---TKLVVIHHISNM 220 (458)
Q Consensus 155 ~----~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~---~~----~~~d~~~l~~~l~~~---~~~v~~~~~~n~ 220 (458)
. ...+++....+||+...++..++ +.....++.+ ++ ..-|+.++++.+..+ +.+|+++..+..
T Consensus 142 ~~~~~~~t~~Iaf~nsyHG~tlgals~~---~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGa 218 (433)
T KOG1401|consen 142 KKHPEKKTKFIAFENSYHGRTLGALSVT---GNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGA 218 (433)
T ss_pred ccCCccceeEEEEecCcCCcchhHHHhh---cccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCC
Confidence 1 11369999999999877766654 2222222221 12 122889999998764 489999999988
Q ss_pred Cccccc----HHHHHHHHHhcCcEEEEeccccC-CcccC----CCCCCCCcEEEecccCC-CCCCceeEEEEeccccccC
Q 012718 221 LASILP----IEEIVHWSHDVGAKVLVDACQSV-PHMVV----DVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAM 290 (458)
Q Consensus 221 tG~~~~----l~~i~~l~~~~~~~vivD~a~~~-g~~~~----~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l 290 (458)
.|.... +..|.++|+++|+++|.|+++.. |.... ..-...+|+.+ +.|. .|+-.+|+..+++++.+.+
T Consensus 219 GG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t--~aK~L~gGlPigA~~v~~kV~~~i 296 (433)
T KOG1401|consen 219 GGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITT--VAKPLGGGLPIGATGVRDKVAEMI 296 (433)
T ss_pred CCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCccee--ehhhccCCceeEEEeehHHHHhhc
Confidence 887776 78999999999999999999873 33211 11123488887 7794 4445599999999998877
Q ss_pred CCccc---cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHhcCCCE
Q 012718 291 PPFLG---GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENLLSIPNI 366 (458)
Q Consensus 291 ~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L~~~~~~ 366 (458)
.+--. |++. ..|.....+...+++++.+-+ +..+.+.-+.+++.+.+.+.+.+..
T Consensus 297 ~~~~~l~hg~Tf---------------------~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~ 355 (433)
T KOG1401|consen 297 SPGDHLYHGGTF---------------------SGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNS 355 (433)
T ss_pred CCCCccccCccc---------------------CCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 64322 2221 234444555556666665532 3455555566666666666554322
Q ss_pred EEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee--C--CCCCHHHHHH
Q 012718 367 RIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL--H--FYNTKEDVDE 442 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~--~--~~~t~~di~~ 442 (458)
..-.. .++-++-+.+.+ ....+.+...+. +..+..+.. ......+|+.+ . .-.++|++.+
T Consensus 356 i~g~~------grgl~ig~~~~~-p~~~~~d~~~~~-~ll~~~~~~--------~~~~~gv~i~P~~~l~~~~~~E~i~~ 419 (433)
T KOG1401|consen 356 ICGGV------GRGLVIGFEFEG-PVYKFADAAREQ-GLLILTLGK--------GLLEEGVRIAPIYLLTVEHTPEVIQR 419 (433)
T ss_pred eeeee------eeEEEEEEEEee-chhhhhhhhhhh-hHHHHHHhc--------ccccceEEEeccccccccCcHHHHHH
Confidence 21111 224444444332 122222222222 222211110 00023566655 1 1135899999
Q ss_pred HHHHHHHHHHhhh
Q 012718 443 FIHALNETVSFFN 455 (458)
Q Consensus 443 l~~~l~~~~~~~~ 455 (458)
+++.+.+.++++.
T Consensus 420 ~l~i~~~~l~~~~ 432 (433)
T KOG1401|consen 420 LLTILEKVLSALN 432 (433)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=123.56 Aligned_cols=338 Identities=16% Similarity=0.112 Sum_probs=208.6
Q ss_pred eEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 68 LVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 68 ~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
+|.|-+.+.+ .+++...++|...-+.+ .-...+.++++.+++++|.+ .+++|++++.+..++.
T Consensus 43 ~IDLrSDTgT~apS~~m~aAM~~GDD~Y-------------~gdpSv~~Lee~vael~G~E---~alpthqGRgaE~Il~ 106 (467)
T TIGR02617 43 FIDLLTDSGTGAVTQSMQAAMMRGDEAY-------------SGSRSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIYI 106 (467)
T ss_pred EEECccCCCCCCCCHHHHHHHHcCCccc-------------ccCchHHHHHHHHHHHhCCc---eEEECCCCchHHHHHH
Confidence 3444455565 48888888887511111 11233457889999999987 7899999999999998
Q ss_pred HHcCCCCCC-CCCEEEEcCC----CCccchHHHHHHHHHcCCeEEEEeC----------CCCCCCCHHHHHHhhcC----
Q 012718 147 YSWGLSNLK-SGDEVILTVA----EHHSAIVPWQLVAQKTGANLKFLNL----------NDDESPDLDKLKEMLSR---- 207 (458)
Q Consensus 147 ~~l~~~~~~-~g~~vl~~~~----~~~s~~~~~~~~a~~~g~~~~~v~~----------~~~~~~d~~~l~~~l~~---- 207 (458)
..+ ++ +|+.+.+... .|..........+...|+.++.++. ..+|.+|++.+++.|.+
T Consensus 107 ~~~----~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~ 182 (467)
T TIGR02617 107 PVL----IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN 182 (467)
T ss_pred Hhh----cccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCC
Confidence 877 55 6777775554 3333332223445667888777642 23588999999999974
Q ss_pred CceEEEEecccCc-Cccccc---HHHHHHHHHhcCcEEEEeccccC-----------CcccCCCCC------CCCcEEEe
Q 012718 208 KTKLVVIHHISNM-LASILP---IEEIVHWSHDVGAKVLVDACQSV-----------PHMVVDVQG------LDADFLVA 266 (458)
Q Consensus 208 ~~~~v~~~~~~n~-tG~~~~---l~~i~~l~~~~~~~vivD~a~~~-----------g~~~~~~~~------~~~d~~~~ 266 (458)
+...+...-.+|. -|+.+| ++++.++|++||+.++.|++=-+ +....++.+ ..+|.++.
T Consensus 183 ~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~ 262 (467)
T TIGR02617 183 NVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAM 262 (467)
T ss_pred CceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEE
Confidence 3344444334443 567788 67899999999999999997321 222222221 24899999
Q ss_pred cccCCCC-CCceeEEEEecc----ccccCCCccccCcceEeeecCCCCCCCCCCcc-CCCCCCHHHHHHHHHHHHHHHHh
Q 012718 267 SSHKMCG-PTGIGFLFGKSD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTI 340 (458)
Q Consensus 267 s~~K~~g-p~g~G~l~~~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~~l~~al~~~~~~ 340 (458)
|++|-+| |- .|+|.++++ +.++++.... .-.+| +.|..+--.+-+++..|....+
T Consensus 263 slsKglgApv-Gg~Lag~d~~~~~l~~~~~~~~i-----------------~~EGf~tYGGlagrd~ea~a~Gl~e~~~- 323 (467)
T TIGR02617 263 SAKKDAMVPM-GGLLCFKDDSFFDVYTECRTLCV-----------------VQEGFPTYGGLEGGAMERLAVGLYDGMN- 323 (467)
T ss_pred EcCCCCCCcc-cceEEecchhHHHHHHHHHhhcc-----------------cccCCcCcCchhHHHHHHHHhhhhhccc-
Confidence 9999555 55 477777765 2233332111 00122 2456666666677666665432
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEE-E----eCC-----CChHHHHHHHhhhcCeEec-c
Q 012718 341 GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSF-N----VEN-----IHPTDIATLLDQQYGVATR-S 409 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~-~----~~~-----~~~~~~~~~l~~~~gi~~~-~ 409 (458)
+.+.++.....++|.+.|.+. |+.+.. . |+.-+| . +|. .....+..+|....||-.. -
T Consensus 324 --~~yl~~ri~qv~yl~~~L~~~-Gvpi~~-~-------Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~ 392 (467)
T TIGR02617 324 --LDWLAYRINQVQYLVNGLEEI-GVVCQQ-A-------GGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEI 392 (467)
T ss_pred --HHHHHHHHHHHHHHHHHHHhC-CCcEEe-c-------CccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEee
Confidence 344445556788999999887 887766 4 443333 2 122 3455677777665587432 2
Q ss_pred CCCCChh---hHhhcC-CCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhh
Q 012718 410 GHHCAQP---LHRYLG-VNASARASLH-FYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 410 g~~~~~~---~~~~~g-~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
|+..... ...... .-..+|+.++ -.-|.+.+|...+++..+.++-.
T Consensus 393 G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~ 443 (467)
T TIGR02617 393 GSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAP 443 (467)
T ss_pred cceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhhh
Confidence 3321110 000000 1368999987 22377999999999999887543
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-13 Score=127.52 Aligned_cols=320 Identities=16% Similarity=0.163 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEeC-ChhHHHHHHHHHcCCCCCCCC----CEEEEcCCCCccchHHHHHHHHHcC
Q 012718 108 KATDEYELARKKVAAFINASDSGEIVFTK-NATEAINLVAYSWGLSNLKSG----DEVILTVAEHHSAIVPWQLVAQKTG 182 (458)
Q Consensus 108 ~~~~~~~~~~~~la~~~g~~~~~~v~~t~-g~t~a~~~~~~~l~~~~~~~g----~~vl~~~~~~~s~~~~~~~~a~~~g 182 (458)
+..+.+.++.+.|++..|.+ .+.|.+ +|.++-..-+..++.....+| ...+++-..|..+ ...|...|
T Consensus 579 GY~~lf~~Le~~Lc~iTG~D---~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTN----PASA~Mag 651 (1001)
T KOG2040|consen 579 GYQQLFTELEKDLCEITGFD---SFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTN----PASAAMAG 651 (1001)
T ss_pred hHHHHHHHHHHHhheeeccc---ceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCC----hhhHHhcC
Confidence 45678889999999999988 566653 444444433433321122222 3678888888877 33456789
Q ss_pred CeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEecccCcCccccc-HHHHHHHHHhcCcEEEEeccccCCcccC-CCC
Q 012718 183 ANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNMLASILP-IEEIVHWSHDVGAKVLVDACQSVPHMVV-DVQ 257 (458)
Q Consensus 183 ~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~-l~~i~~l~~~~~~~vivD~a~~~g~~~~-~~~ 257 (458)
.+++.|..+.+|.+|..+|+++.++ +-.++.++.|++ .|..-+ ++++.++.|+||-.|..|++.--..+.+ ...
T Consensus 652 mkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pG 730 (1001)
T KOG2040|consen 652 MKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPG 730 (1001)
T ss_pred CEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccCCc
Confidence 9999999999999999999998766 347788888855 566665 9999999999999999999976444323 356
Q ss_pred CCCCcEEEecccCCCC-CCc-----eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccC-CCCCCHHHHHHH
Q 012718 258 GLDADFLVASSHKMCG-PTG-----IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFE-AGTPAIGEAIGL 330 (458)
Q Consensus 258 ~~~~d~~~~s~~K~~g-p~g-----~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~l 330 (458)
++|.|+.-.++||.|. |.| +|-+.+++ .+.|++.++..++..... ....+. ++..++.....+
T Consensus 731 d~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~----HLapfLP~HpVvs~~~~~------~~~~~gsVsaaP~Gsa~IL 800 (1001)
T KOG2040|consen 731 DIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK----HLAPFLPSHPVVSPGRPE------DTSPVGSVSAAPWGSALIL 800 (1001)
T ss_pred cccccceeecccceeeecCCCCCCCCCccchhh----hccccCCCCCccCCCCCC------CCCCccceeccCCCcceee
Confidence 7789999999999553 443 55555554 445555444333210000 001111 122222222333
Q ss_pred ---HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE---e-CCCChHHHHHHHhhhc
Q 012718 331 ---GAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN---V-ENIHPTDIATLLDQQY 403 (458)
Q Consensus 331 ---~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~---~-~~~~~~~~~~~l~~~~ 403 (458)
++-++.+...|+....+-..-+++|+.++|++. ++++.........+-+++-.+ - .++...++.++|.+-
T Consensus 801 pISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h--Ykil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DY- 877 (1001)
T KOG2040|consen 801 PISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH--YKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDY- 877 (1001)
T ss_pred hhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--cceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhc-
Confidence 344556666677777777778899999999875 444333321001111222221 1 257788999999976
Q ss_pred CeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 404 GVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 404 gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
|+.....+ |-..+.+-|-+.-..+.+|+|++++++-.+-++++++
T Consensus 878 gFHaPTms---------wPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI~~i 922 (1001)
T KOG2040|consen 878 GFHAPTMS---------WPVAGTLMIEPTESEDKAELDRFCDALISIREEIAQI 922 (1001)
T ss_pred cCCCCccc---------cccCCceEeccCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 88765443 4457889998887789999999999999988887653
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-12 Score=109.92 Aligned_cols=350 Identities=17% Similarity=0.187 Sum_probs=231.6
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccC-CC-CCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEe-CChhHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSN-VH-RGIHFLSAKATDEYELARKKVAAFINASDSGEIVFT-KNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t-~g~t~a~ 142 (458)
...++|..|. ..+|.+++..+.+-+.+++.- .. ....+++..+...+++.+..+.++++.++...|+|. +|||.-+
T Consensus 6 ~~vvnFaaGP-Aklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qF 84 (370)
T KOG2790|consen 6 ERVVNFAAGP-AKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQF 84 (370)
T ss_pred cceeecCCCc-ccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccc
Confidence 4456665443 356777766666555543321 11 113345566888899999999999999988788765 6777777
Q ss_pred HHHHHHcCCCCCCCC---CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC---C-CCCHHHHHHhhcCCceEEEEe
Q 012718 143 NLVAYSWGLSNLKSG---DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD---E-SPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g---~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~---~-~~d~~~l~~~l~~~~~~v~~~ 215 (458)
..+...+. .++.| |-|++.. |... ++.. |+++|..-+.++--.+ | ..|.+.++ ++++.+.++++
T Consensus 85 aAv~lNL~--glK~g~~AdYiVTGs--WS~K--A~~E-Akk~~~~~~V~~~~k~y~ygkvPd~~~w~--~~~da~yvyyC 155 (370)
T KOG2790|consen 85 AAVPLNLI--GLKHGRCADYVVTGS--WSAK--AAEE-AKKYGTPNIVIPKLKSYTYGKVPDPSTWE--LNPDASYVYYC 155 (370)
T ss_pred cccchhhh--ccccCCccceEEecc--ccHH--HHHH-HHhhCCceEEeccccccccCcCCChhhcc--cCCCccEEEEe
Confidence 66665553 13444 3444443 2221 3344 4556654333332222 1 23555554 34566799999
Q ss_pred cccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccc
Q 012718 216 HISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 216 ~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~ 295 (458)
...+..|.-++.-- +-.-+|..++.|-+.-+-..|+|+.+ .+++....+|-.||.|+-++++|++++....+...
T Consensus 156 aNETVHGVEf~~~P---~~~~~~~vlVaDmSSnflSrpvDvsk--~gvi~aGAQKN~G~aG~Tvvivr~dllg~~~~~tP 230 (370)
T KOG2790|consen 156 ANETVHGVEFDFIP---VNDPKGAVLVADMSSNFLSRPVDVSK--FGVIFAGAQKNVGPAGVTVVIVRKDLLGNALDITP 230 (370)
T ss_pred cCceeeceecCCCC---CCCCCCceEEEecccchhcCCccchh--cceEEeccccccCccccEEEEEehhhhcccccCCc
Confidence 99999998887222 12347889999999999999999887 56788899999999999999999998866543321
Q ss_pred cCcceEeeecCCCCCCCCC-CccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 296 GGEMISDVFLDHSTFADPP-SRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
.- .+|..-. ..--..|++...+..+...++++.+. |+..+.+...+.++.+++.+.+..|+-.....+
T Consensus 231 ~v----------~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~ 300 (370)
T KOG2790|consen 231 SV----------LDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEP 300 (370)
T ss_pred cc----------cceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccch
Confidence 10 1111111 11124689999999999999998775 699999999999999999999887776443333
Q ss_pred CCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
. .++-..|+|++.. .-..++.+...++ ++.---|+. .-+.+|.|+-...+.+++.+|++.++++.+
T Consensus 301 ~--~RS~MNV~Fri~~d~Le~eFLkeA~~~-~mv~LKGhR----------SVGGiRASlYNAisv~~~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 301 S--VRSRMNVPFRIEKDELEAEFLKEAAKE-HMVQLKGHR----------SVGGIRASLYNAISVEEVQKLAAFMKEFQK 367 (370)
T ss_pred h--hhhhcccceeecchHHHHHHHHHHHHh-hhhcccccc----------ccccchhhhhccccHHHHHHHHHHHHHHHH
Confidence 2 2333478898863 2245666666666 543333331 146899999877899999999999998876
Q ss_pred h
Q 012718 453 F 453 (458)
Q Consensus 453 ~ 453 (458)
.
T Consensus 368 ~ 368 (370)
T KOG2790|consen 368 K 368 (370)
T ss_pred h
Confidence 3
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-12 Score=119.66 Aligned_cols=232 Identities=19% Similarity=0.233 Sum_probs=153.5
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
+..-+.+.+...+++++++.+.+...- + ...+............+.+.++...++ +.++++++.+.|+.+++.+
T Consensus 29 v~~t~lG~s~~~~e~iea~~~~~~~~v-~--Le~~l~~g~~~~R~~~~~~~~~~~~~a---ea~~ivnnn~aAVll~~~a 102 (395)
T COG1921 29 VLMTNLGRSLYSPEAIEAMKEAMRAPV-E--LETDLKTGKRGARLTELAELLCGLTGA---EAAAIVNNNAAAVLLTLNA 102 (395)
T ss_pred heeccCCCccCCHHHHHHHHHHhcccc-e--eeeecccchhhHHHHHHHHHHhcccch---hheeeECCcHHHHHHHHhh
Confidence 334445667888889998887765421 1 111111111222222344444444443 4889999999999999988
Q ss_pred cCCCCCCCCCEEEEcC-----CCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 149 WGLSNLKSGDEVILTV-----AEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~-----~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
+. + +.+++++. +.+. ++...++..|++++.+.. .+.-...+++.+|.++++++.-.+.+|. |.
T Consensus 103 l~----~-~~EvVis~g~lV~gg~~----~v~d~~~~aG~~l~EvG~--tn~t~~~d~~~AIne~ta~llkV~s~~~-~f 170 (395)
T COG1921 103 LA----E-GKEVVVSRGELVEGGAF----RVPDIIRLAGAKLVEVGT--TNRTHLKDYELAINENTALLLKVHSSNY-GF 170 (395)
T ss_pred hc----c-CCeEEEEccccccCCCC----ChhHHHHHcCCEEEEecc--cCcCCHHHHHHHhccCCeeEEEEeeccc-cc
Confidence 72 3 44554443 2333 457778888999888864 3445889999999999988887776664 43
Q ss_pred --cccHHHHHHHHHhcCcEEEEeccccCCcc-cC---CCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccC
Q 012718 224 --ILPIEEIVHWSHDVGAKVLVDACQSVPHM-VV---DVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGG 297 (458)
Q Consensus 224 --~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~---~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~ 297 (458)
.++.++++++||++|+++++|.+.+.... .. ..-+.|+|++++|++|++|++-.|+++++++++++++..-.+
T Consensus 171 ~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq~~~l~- 249 (395)
T COG1921 171 TGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHPLK- 249 (395)
T ss_pred cccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCccceEechHHHHHHHHhhhhh-
Confidence 44588899999999999999999865422 11 233568999999999977655599999999999877632211
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
+.+..+- ..++++.++|+.+..
T Consensus 250 -----------------Ralrv~K---~tla~l~~aLe~y~~ 271 (395)
T COG1921 250 -----------------RALRVDK---ETLAALEAALELYLQ 271 (395)
T ss_pred -----------------hhhhcCc---HhHHHHHHHHHHHcC
Confidence 1222222 345788888887665
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-13 Score=125.38 Aligned_cols=300 Identities=17% Similarity=0.153 Sum_probs=165.7
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCChh-HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-
Q 012718 114 ELARKKVAAFINASDSGEIVFTKNAT-EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN- 191 (458)
Q Consensus 114 ~~~~~~la~~~g~~~~~~v~~t~g~t-~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~- 191 (458)
..+...+-+..|.+.....++++-+| .++.+.+.+++ .-..++.|+.+..+|.+.+.+ +...|.+++.|+..
T Consensus 59 n~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~--~r~~a~~Viw~ridqkSc~ka----i~~AGl~~~vV~~~~ 132 (389)
T PF05889_consen 59 NSLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALR--MRPKAKYVIWPRIDQKSCFKA----IERAGLEPVVVENVL 132 (389)
T ss_dssp HHHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHH--HHCT--EEEEEEEETHHHHHH----HHHTT-EEEEE-EEE
T ss_pred HHHHHHHHHHcCCccccceEEEecccccHHHHHHHHHh--cccCCceEEEeeccccchHHH----HHhcCCeEEEeeccC
Confidence 34444555667887544556665554 23344444442 124678999999999977544 35569999998854
Q ss_pred -CC-CCCCHHHHHHhhcC---CceEEEEecccCcCccccc-HHHHHHHHHhcCcEEEEeccccCCccc----CC--CCCC
Q 012718 192 -DD-ESPDLDKLKEMLSR---KTKLVVIHHISNMLASILP-IEEIVHWSHDVGAKVLVDACQSVPHMV----VD--VQGL 259 (458)
Q Consensus 192 -~~-~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~-l~~i~~l~~~~~~~vivD~a~~~g~~~----~~--~~~~ 259 (458)
+| -..|++.+++.+++ ...+.++++.+...|...| +++|+++|+++|+..++..||++-... ++ ...-
T Consensus 133 ~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~G 212 (389)
T PF05889_consen 133 EGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVG 212 (389)
T ss_dssp ETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHS
T ss_pred CCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcC
Confidence 23 23477888888754 4578889999999999998 999999999999999999999981110 00 0000
Q ss_pred CCcEEEecccC-CCCCCceeEEEEecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH
Q 012718 260 DADFLVASSHK-MCGPTGIGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 260 ~~d~~~~s~~K-~~gp~g~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
..|+++-|..| ++.|-|.+.+....+ .+..+...+.| -.+..+..-+-..|..+
T Consensus 213 Rvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpG------------------------Ras~sp~ld~~itLl~L 268 (389)
T PF05889_consen 213 RVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPG------------------------RASASPSLDLFITLLSL 268 (389)
T ss_dssp TCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHS------------------------HBTSHHHHHHHHHHHHH
T ss_pred CcceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhh------------------------hhhcccchHHHHHHHHH
Confidence 14666666666 555666555555442 33333222111 01111112222333444
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCcccc-EEEEEeCCCC------hHHHHHHHhhhcCeEe
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAA-LCSFNVENIH------PTDIATLLDQQYGVAT 407 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~-~v~~~~~~~~------~~~~~~~l~~~~gi~~ 407 (458)
...|+........++..++.+.|++. -+-++...+. -+ .+.|.++... ...+...|..+ +|.-
T Consensus 269 G~~g~~~ll~~r~~~f~~l~erl~~~aee~~e~ll~~p~------N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R-~VsG 341 (389)
T PF05889_consen 269 GCTGYGALLKERKASFPYLKERLKKWAEEVGERLLETPR------NHISMAFTLDTLYEISQKDGTFLGSMLFKR-GVSG 341 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT-------SSEEEEE-TTCCTCCSSHHHHHHHHHHHT-TEES
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC------CCeeEEEECccchhhccchhhhHHHHHHhC-Cccc
Confidence 44455666666666666666665533 2444443332 33 4556665322 35788889888 8842
Q ss_pred c----cC-CCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 408 R----SG-HHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 408 ~----~g-~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
. ++ .... .+...-...++-++.....+.||||.++++|+++++
T Consensus 342 ~RvV~~~~~~~t--sh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 342 IRVVTPGGKKQT--SHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp SEEEETSSCEEE--TTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred ceeeccCCCccc--ccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 1 11 1000 000001136888877777999999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=118.25 Aligned_cols=259 Identities=17% Similarity=0.200 Sum_probs=162.3
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++..|+|.. ..|.-.+.+.+++.+.+........... ..+...++-+.|.+.++... +.+.|++||+
T Consensus 14 dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~------~~~~~~~la~~L~~~~p~~~-~~v~f~~sGs 86 (339)
T PF00202_consen 14 DGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGF------THPEAAELAEKLAELFPGGL-DRVFFANSGS 86 (339)
T ss_dssp TSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTS------EEHHHHHHHHHHHHHSSTTE-EEEEEESSHH
T ss_pred CCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccce------eccchhhhhhhhhhcccccc-ceeeeccCch
Confidence 455677753 3556678999999998876432210111 12334466777888884322 3899999999
Q ss_pred HHHHHHHHHcCC----CCCCCCCEEEEcCCCCccchHHHHHHHH----HcC-----CeEEEEeCCCCCCCCHHH------
Q 012718 140 EAINLVAYSWGL----SNLKSGDEVILTVAEHHSAIVPWQLVAQ----KTG-----ANLKFLNLNDDESPDLDK------ 200 (458)
Q Consensus 140 ~a~~~~~~~l~~----~~~~~g~~vl~~~~~~~s~~~~~~~~a~----~~g-----~~~~~v~~~~~~~~d~~~------ 200 (458)
+|++.++..... .......+|+....+||+.......+.. +.+ ..+..+|.+ ++..
T Consensus 87 eAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~~~ 161 (339)
T PF00202_consen 87 EAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFP-----DPAADEEEQA 161 (339)
T ss_dssp HHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETT-----CHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCC-----ccchhhhHHH
Confidence 999999987630 0123456999999999987654333210 111 134666655 3322
Q ss_pred ----HHHh----hcCCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCcE
Q 012718 201 ----LKEM----LSRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADF 263 (458)
Q Consensus 201 ----l~~~----l~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d~ 263 (458)
+++. -.+++.+|+++.++...|...+ +++|.++|+++|+++|+|+++. +|... + +.....+|+
T Consensus 162 ~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDi 241 (339)
T PF00202_consen 162 CLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDI 241 (339)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSE
T ss_pred HHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcc
Confidence 2222 2346789999999988888776 8999999999999999999988 32221 1 122345899
Q ss_pred EEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 264 LVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 264 ~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
++.+ | +-|...+|.+++++++.+.+.+...+. .-..+....++..+.|+.+.+.
T Consensus 242 v~~g--K~l~gG~p~sav~~~~~i~~~~~~~~~~~---------------------T~~g~p~~~aaa~~~l~~~~~~-- 296 (339)
T PF00202_consen 242 VTFG--KGLGGGLPISAVLGSEEIMEAFQPGSHGS---------------------TFGGNPLSCAAALATLEILEEE-- 296 (339)
T ss_dssp EEEE--GGGGTTSSEEEEEEEHHHHTTSCTTSSTC---------------------TTTT-HHHHHHHHHHHHHHHHT--
T ss_pred cccc--cchhhhhhcccccccchhhcccccccccc---------------------ccccchHhhhhhhhHHHhhccH--
Confidence 9964 9 444556999999999877665332211 1134555666666777777664
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 012718 343 QKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~ 362 (458)
.+.++.+++.++|.+.|++
T Consensus 297 -~~~~~~~~~g~~l~~~L~~ 315 (339)
T PF00202_consen 297 -DLLERVRELGERLREGLRE 315 (339)
T ss_dssp -THHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666554
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-13 Score=126.38 Aligned_cols=204 Identities=20% Similarity=0.291 Sum_probs=43.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL 154 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~ 154 (458)
+.++.++++.+++.+....+ .|....... .+-......+.+.++.+.|+. ..+++++...|+.+++.++
T Consensus 14 GRs~l~~~a~~a~~~~a~~Y-~nLE~dl~~--G~Rg~R~~~v~~ll~~ltgAe---aA~VvNnnaAAv~L~l~~l----- 82 (367)
T PF03841_consen 14 GRSPLSEEAIEAVAEVASGY-SNLEYDLET--GKRGSRYAHVEELLCELTGAE---AALVVNNNAAAVLLALNTL----- 82 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc-ccccccccc--ccccccccccccccccccccc---ccccccccccccccccccc-----
Confidence 55678888888887765432 111101100 111223446778889999987 5677888888999998877
Q ss_pred CCCCEEEEcCCCCccchHH--HHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcc----cccHH
Q 012718 155 KSGDEVILTVAEHHSAIVP--WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS----ILPIE 228 (458)
Q Consensus 155 ~~g~~vl~~~~~~~s~~~~--~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~----~~~l~ 228 (458)
.+|.+|+++..+-...-.+ +..+.+..|++++.|-.. +.-.+++++++|+++|.+++..|.+|..-. ..+++
T Consensus 83 a~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt--N~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~ 160 (367)
T PF03841_consen 83 AKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT--NRTHLSDYEKAITENTAALLKVHTSNFRIQGFTGEVSLE 160 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccHH
Confidence 3567888887654422222 344555668888877654 334678899999999999999988887432 44799
Q ss_pred HHHHHHHhcCcEEEEecccc---------CCccc--CCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCC
Q 012718 229 EIVHWSHDVGAKVLVDACQS---------VPHMV--VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~---------~g~~~--~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~ 291 (458)
++++++|+|++++++|...+ ++..| .+.-+.|+|++++|+.|++|++-.|+++++++++++++
T Consensus 161 el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~~lk 234 (367)
T PF03841_consen 161 ELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKKELIEKLK 234 (367)
T ss_dssp HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEEEHHHHHHHH
T ss_pred HHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCHHHHHHHh
Confidence 99999999999999999974 22211 12345689999999999766555899999999998775
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-10 Score=104.80 Aligned_cols=173 Identities=22% Similarity=0.301 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEe--CChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHH-------HHH
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFT--KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-------AQK 180 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t--~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-------a~~ 180 (458)
....+.+.+..|+.||++. .+|=. .|||+|+.+++.++ ++|||+++.....-+-++.....+ .+.
T Consensus 53 D~GRd~le~iyA~vfgaE~--ALVRpq~vSGTHAi~~~Lfg~----LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e 126 (403)
T PF06838_consen 53 DIGRDKLERIYADVFGAED--ALVRPQFVSGTHAIALALFGV----LRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKE 126 (403)
T ss_dssp -HHHHHHHHHHHHHCT-SE--EEEETTS-SHHHHHHHHHHHH------TT-EEEESSSS--CCHHHHHTSSSSSSSSTGG
T ss_pred CccHHHHHHHHHHHhCchh--hhhcccccchHHHHHHHHHhc----CCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHH
Confidence 4466678899999999984 33322 48999999999998 899999987654444333222211 023
Q ss_pred cCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccc----cHHHHHH---HHHh--cCcEEEEeccccCCc
Q 012718 181 TGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL----PIEEIVH---WSHD--VGAKVLVDACQSVPH 251 (458)
Q Consensus 181 ~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~----~l~~i~~---l~~~--~~~~vivD~a~~~g~ 251 (458)
.|++...+++.++|.+|.+.+++++++++++|++.-- .|.-. ++++|.+ ++|+ .+++++||.+|+--.
T Consensus 127 ~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRS---rGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFv 203 (403)
T PF06838_consen 127 FGIKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRS---RGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFV 203 (403)
T ss_dssp GT-EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S----TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTT
T ss_pred hCceeEEEeecCCCCcCHHHHHHhhccCceEEEEecC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceec
Confidence 5789999999999999999999999999999998655 44332 3455444 4454 689999999999665
Q ss_pred ccCCCCCCCCcEEEecccC-CCC--CCceeEEEEeccccccCC
Q 012718 252 MVVDVQGLDADFLVASSHK-MCG--PTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 252 ~~~~~~~~~~d~~~~s~~K-~~g--p~g~G~l~~~~~~~~~l~ 291 (458)
........|+|++.+|+=| ..| .+..|+++.++++++...
T Consensus 204 E~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a 246 (403)
T PF06838_consen 204 ETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAA 246 (403)
T ss_dssp SSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHH
T ss_pred cccCccccchhheeccceeCCCCCccCcCCEEechHHHHHHHH
Confidence 5455567789999999999 433 233799999999987754
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=111.80 Aligned_cols=294 Identities=16% Similarity=0.177 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHcCCC--CCCcEEEeCChhHHHHHHHHHcCCC--CCCCCCEEEEcCCCCccchHHHHHHHHHcCCeE
Q 012718 110 TDEYELARKKVAAFINAS--DSGEIVFTKNATEAINLVAYSWGLS--NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~--~~~~v~~t~g~t~a~~~~~~~l~~~--~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~ 185 (458)
...+++..+.|-+.+|.- .+..|||.+|+|+.++.++.+|... .-.+--+|+...|-|+ .+........-..
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~----~Y~~qt~~f~s~~ 120 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYS----SYPEQTDFFDSRL 120 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--C----HHHHHCCCT-BTT
T ss_pred cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCcc----chHHHHHhccccC
Confidence 344555556666777643 3349999999999999999998532 1112237778888777 3343222111111
Q ss_pred EEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEE
Q 012718 186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLV 265 (458)
Q Consensus 186 ~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~ 265 (458)
-... | |.....+.-...+-+=+++.|+||.|.+-- .+++..+..+|-|-+|..++...--...+-|+++
T Consensus 121 y~w~----G--da~~~~~~~~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiML 189 (363)
T PF04864_consen 121 YKWA----G--DASNFKNSDNPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYWPHYTPITAPADHDIML 189 (363)
T ss_dssp EEEE----E--ECCCGTT-S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-B--SEEE
T ss_pred cccc----c--cHHhhccCCCCCCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeecccccccCCCCCCceEE
Confidence 1111 1 111221111123345579999999997642 1235566778999999988863222345679999
Q ss_pred ecccCCCCCCc--eeEEEEecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-HHhC
Q 012718 266 ASSHKMCGPTG--IGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-STIG 341 (458)
Q Consensus 266 ~s~~K~~gp~g--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~g 341 (458)
+++||+-|-.| .||.+++++ +.++|..++. .-..|..--.++-++. .|+.+ ...+
T Consensus 190 FT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~--------------------lnTiGvS~dsQLRa~k-iLk~v~~~~~ 248 (363)
T PF04864_consen 190 FTLSKLTGHAGSRFGWALVKDEEVAKKMTKYME--------------------LNTIGVSRDSQLRALK-ILKVVLDGYG 248 (363)
T ss_dssp EEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHH--------------------HHCSS--HHHHHHHHH-HHHHHHHHCC
T ss_pred EEEecccCccccccceeeecCHHHHHHHHHHHH--------------------HhcccCcHHHHHHHHH-HHHHHHhccc
Confidence 99999887666 999999985 4455544332 0112333333444432 22222 2111
Q ss_pred H--------HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc-------CccccEEEEEeCCCChHHHHHHHhhhcCeE
Q 012718 342 M--------QKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH-------VQRAALCSFNVENIHPTDIATLLDQQYGVA 406 (458)
Q Consensus 342 ~--------~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~ 406 (458)
. .--.+.++++-+.|.+.+.+...+.+..-.+..+ ..+..+.|++.......+....|++. ||.
T Consensus 249 ~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~~-~I~ 327 (363)
T PF04864_consen 249 TEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLREA-KII 327 (363)
T ss_dssp HHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHCT-TEE
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcccccHHHHHHhC-Ccc
Confidence 1 1223555666677777777665666554433111 11234889988765557888899988 999
Q ss_pred eccCCCCChhhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 407 TRSGHHCAQPLHRYLGV-NASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 407 ~~~g~~~~~~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
.+.|..+ |. ..++|+|+- .+.+|.+.|+++|..+
T Consensus 328 tr~G~~f--------ga~~ryVRlSml--~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 328 TRSGVLF--------GADSRYVRLSML--KRDDDFDQLLERLSKL 362 (363)
T ss_dssp EEEGGGG--------TS-TTEEEEESS--S-HHHHHHHHHHHHCC
T ss_pred cCCCCcc--------CCCCCeEEEecc--CCHHHHHHHHHHHHhh
Confidence 9999844 33 679999998 7999999999998754
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-09 Score=98.18 Aligned_cols=342 Identities=16% Similarity=0.130 Sum_probs=209.6
Q ss_pred CCeEEec---CCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLD---NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
...+|.| ..+++.+.+....+|..--+.+.++ ..+..+.+++.+.+|.+ .++.|+-|..|-
T Consensus 44 Sedv~IDLLTDSGTgams~~qwaamm~GDEAYags-------------rs~~~L~~avkdifGfq---~~iPthQGRgAE 107 (471)
T COG3033 44 SEDVFIDLLTDSGTGAMTDKQWAAMMRGDEAYAGS-------------RSYYALADAVKDIFGFQ---YTIPTHQGRGAE 107 (471)
T ss_pred ccceEEEeeccCCcccccHHHHHHHhccchhhccc-------------ccHHHHHHHHHHhcCce---eeeeccCCccHH
Confidence 3344544 3466688998888887664443322 12236778889999976 778888777777
Q ss_pred HHHHHHcCC-CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC----------CCCCCHHHHHHhhcC----
Q 012718 143 NLVAYSWGL-SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----------DESPDLDKLKEMLSR---- 207 (458)
Q Consensus 143 ~~~~~~l~~-~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~----------~~~~d~~~l~~~l~~---- 207 (458)
+++...+.. ....||++..+++..|..+.. ...+..|+.++-+++++ .|.+|++.|++.|++
T Consensus 108 ~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr---~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~ 184 (471)
T COG3033 108 NILIPILIKKGEQEPGSKMVAFSNYHFDTTR---GHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD 184 (471)
T ss_pred HHHHHHHhhhccccCCccccccccceecchh---HHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc
Confidence 777655421 234567777777777776653 33455688777666652 268899999999986
Q ss_pred CceEEEEecc-cCcCccccc---HHHHHHHHHhcCcEEEEeccccC------CcccCCCCCC-----------CCcEEEe
Q 012718 208 KTKLVVIHHI-SNMLASILP---IEEIVHWSHDVGAKVLVDACQSV------PHMVVDVQGL-----------DADFLVA 266 (458)
Q Consensus 208 ~~~~v~~~~~-~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~------g~~~~~~~~~-----------~~d~~~~ 266 (458)
++..|+++-. ++..|+..+ ++++.++|++|++.++.|++-.. -.......++ -+|-.+.
T Consensus 185 nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~m 264 (471)
T COG3033 185 NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTM 264 (471)
T ss_pred cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhhee
Confidence 4555655444 444666666 77999999999999999999442 1111122222 1788999
Q ss_pred cccC-CCCCCceeEEEEeccc----cccCCCccccCcceEeeecCCCCCCCCCCccC-CCCCCHHHHHHHHHHHHHHHHh
Q 012718 267 SSHK-MCGPTGIGFLFGKSDL----LSAMPPFLGGGEMISDVFLDHSTFADPPSRFE-AGTPAIGEAIGLGAAIDYLSTI 340 (458)
Q Consensus 267 s~~K-~~gp~g~G~l~~~~~~----~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~l~~al~~~~~~ 340 (458)
|.-| .+.+- .|+|.++++. ...++.... .+ .+|. .|...-..+.+++..|..--+
T Consensus 265 S~KKD~lvnm-GGfl~~~D~~~fDvy~~~~~~~V-------~~----------eG~~tYGgl~GrdmealAvGL~e~~~- 325 (471)
T COG3033 265 SAKKDGLVNM-GGFLCFKDDSFFDVYEECRTLVV-------VQ----------EGFPTYGGLAGRDMEALAVGLREGVN- 325 (471)
T ss_pred eccccceecc-ccEEEecCccHHHHHHHHHhheE-------ee----------ccccccCcccchhHHHHHHHHHHhcC-
Confidence 9999 66655 4899999873 233321110 00 0111 233333444555555543322
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccE-EEEEe----CC-----CChHHHHHHHhhhcCeEeccC
Q 012718 341 GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAAL-CSFNV----EN-----IHPTDIATLLDQQYGVATRSG 410 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-v~~~~----~~-----~~~~~~~~~l~~~~gi~~~~g 410 (458)
.+-+ ++..+..+||.+.|.+. |+.+..|. |+. +.+.. |. ...+.+...|..++||-...-
T Consensus 326 -~~yl-~~Rv~Qv~YL~~~l~~~-GVpi~~pa-------GGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavEl 395 (471)
T COG3033 326 -FDYL-AHRVAQVQYLADGLEEA-GVPIVQPA-------GGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVEL 395 (471)
T ss_pred -cHHH-HHHHHHHHHHHHHHHhc-CCeeEecC-------CCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeee
Confidence 3333 44446678999999988 88887776 332 22322 22 345667777776668865432
Q ss_pred CCCChhhHhhcCC-----CCeEEEeeCC-CCCHHHHHHHHHHHHHHHHhhh
Q 012718 411 HHCAQPLHRYLGV-----NASARASLHF-YNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 411 ~~~~~~~~~~~g~-----~~~lRis~~~-~~t~~di~~l~~~l~~~~~~~~ 455 (458)
..++......-|. -..+|+.+.- --|.+.+|..++.++.+.++-.
T Consensus 396 G~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~~ 446 (471)
T COG3033 396 GSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENAE 446 (471)
T ss_pred eceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhccc
Confidence 2111111101111 2689998862 2377999999999999887543
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-10 Score=100.72 Aligned_cols=330 Identities=13% Similarity=0.103 Sum_probs=207.0
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.|..-+++.++....+.....|.. - -..++.+-++...+.+-+.+ -+.|+++|++|+.++++..+ .+.
T Consensus 59 vghchp~VV~A~~kQmat~~tN~R-F------lhd~lv~cA~~l~stlPeLs---vc~F~NSGSEANDLALRLAR--~ft 126 (452)
T KOG1403|consen 59 VGHCHPEVVRAGAKQMATISTNNR-F------LHDELVQCARTLTSTLPELS---VCFFVNSGSEANDLALRLAR--NFT 126 (452)
T ss_pred cccCCHHHHHHHHHHHhHhcccch-h------hHHHHHHHHHHHhhcCCCce---EEEEecCCchhhHHHHHHHH--hhc
Confidence 446778888888877776655531 1 12445555666666665544 77899999999999999764 466
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHH---cC---Ce---EEEEeCCCC--C-------------CCCHHHHHHhhcC----
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQK---TG---AN---LKFLNLNDD--E-------------SPDLDKLKEMLSR---- 207 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~---~g---~~---~~~v~~~~~--~-------------~~d~~~l~~~l~~---- 207 (458)
+...+++.+..|++.......+... .| .+ ++..|..+- | ..=.+.+++.+.+
T Consensus 127 khqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~ 206 (452)
T KOG1403|consen 127 KHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAK 206 (452)
T ss_pred ccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhc
Confidence 6677888888888776543332110 11 12 122222210 1 0111233443322
Q ss_pred --CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc---C--CCCCCCCcEEEecccC-CCCC
Q 012718 208 --KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV---V--DVQGLDADFLVASSHK-MCGP 274 (458)
Q Consensus 208 --~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~---~--~~~~~~~d~~~~s~~K-~~gp 274 (458)
++.+++.+..++..|+++| .+++++..|.+|-+.|.|++|. +|.+. + .+..+-+|+++ ..| +..+
T Consensus 207 g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVt--mgKpmGNG 284 (452)
T KOG1403|consen 207 GQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVT--MGKPMGNG 284 (452)
T ss_pred CCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchhe--ecccCCCC
Confidence 4567788888999999998 7899999999999999999986 33321 1 12233478877 778 5557
Q ss_pred CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 012718 275 TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAK 354 (458)
Q Consensus 275 ~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~ 354 (458)
..++.++..+++.+.+...-. ..|.....|+...+...+.++.+.. +.++.+..+..+
T Consensus 285 hPVa~VattkeIA~Af~atgv-------------------~YFNTyGGnPVsCAv~laVm~v~e~---E~Lq~ha~~vG~ 342 (452)
T KOG1403|consen 285 HPVAAVATTKEIAQAFHATGV-------------------EYFNTYGGNPVSCAVGLAVMRVCED---ENLQEHAQQVGE 342 (452)
T ss_pred CeeeEEeccHHHHHHhccccc-------------------eehhccCCCchhHHHHHHHHHHHhh---hhHHHHHHHHHH
Confidence 779999999887665542100 1233223333334444444554443 677788888888
Q ss_pred HHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCC-----C----ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 355 YLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVEN-----I----HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 355 ~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~-----~----~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
+|...|++.. ..++.+.... -|-++-+.+-. . .+.-++.+|++.|+|.++...- ..
T Consensus 343 ~L~~lL~~~k~kh~~IGDvRG----vGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGP----------h~ 408 (452)
T KOG1403|consen 343 KLEVLLRRLKQKHECIGDVRG----VGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGP----------HR 408 (452)
T ss_pred HHHHHHHHHhhhccceecccc----ceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCC----------CC
Confidence 8888876542 3445555421 13355565421 1 1334667888888898864320 15
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 425 ASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.+.|-+..+.++++.++++..|++++..+.
T Consensus 409 NilKiKPPmCFneena~e~v~~ld~iLT~me 439 (452)
T KOG1403|consen 409 NILKIKPPMCFNEENADEFVLGLDEILTVME 439 (452)
T ss_pred ceeecCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 7899988888899999999999999987543
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-09 Score=103.71 Aligned_cols=299 Identities=16% Similarity=0.179 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
.+...+..++++.|.+-. +.-+..-||.|-+.++.+. ...++.++++....|+.+....+..++..|++++..+
T Consensus 164 sllNyQTmi~dlTGL~~a-NASLLDEgTAaaEAm~l~~---~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~-- 237 (1001)
T KOG2040|consen 164 SLLNYQTMITDLTGLPMA-NASLLDEGTAAAEAMALCN---RINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD-- 237 (1001)
T ss_pred HHhhhHHhhhhccCCccc-chhhhccchhHHHHHHHHH---hhcccceEEecCCCCcchhhhhhccccccceeEEecC--
Confidence 334467788999999855 4555555566666666555 3567778999999999888777776666666644432
Q ss_pred CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC
Q 012718 192 DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM 271 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 271 (458)
+.+... ..+++..+++..| +.-|.+.|.+++++.+++.|.++++-.--..-.+.-...++|+|+.++|.+.+
T Consensus 238 ------~~~~~~-s~~~v~gvlvQYP-~t~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF 309 (1001)
T KOG2040|consen 238 ------IKEADY-SSKDVSGVLVQYP-DTEGSVLDFDELVELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF 309 (1001)
T ss_pred ------HHHhhc-cccceeEEEEEcC-CCCCcccCHHHHHHHhhccCceEEEeehhhHHHccCChhhcCceeeecccccc
Confidence 222211 2234566666665 55899999999999999999886653322222222345688999999999987
Q ss_pred CCCCc-----eeEEEEeccccccCCCccccCcceEeeecCCCCC------CCCCCccCCCCCCHHHHHHHHHHHHHHHH-
Q 012718 272 CGPTG-----IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTF------ADPPSRFEAGTPAIGEAIGLGAAIDYLST- 339 (458)
Q Consensus 272 ~gp~g-----~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~gt~~~~~~~~l~~al~~~~~- 339 (458)
.-|-| .||+.+++++.+.++..+.|-.. + ...-..| ..-..|-+..|.|.....++.+-+..+..
T Consensus 310 GVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtk--D-~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyai 386 (1001)
T KOG2040|consen 310 GVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTK--D-ALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAI 386 (1001)
T ss_pred CccccCCCchHHHHHHHHHHHhhCCCceEeeee--c-ccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhh
Confidence 43322 88999998887777644432211 0 0000000 00012334567777666666655553333
Q ss_pred ----hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCCh
Q 012718 340 ----IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQ 415 (458)
Q Consensus 340 ----~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~ 415 (458)
.|++.+.+++..+...|...|+.. |.++....- --.+.+++.+ +.+++..+..++ +|.++--.
T Consensus 387 YHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~~k~f------FDTLkI~~~~-s~~~~l~rA~~~-~iNlr~~e---- 453 (1001)
T KOG2040|consen 387 YHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQHKPF------FDTLKIRCGC-SAEEVLDRAAKR-QINLRLVE---- 453 (1001)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhccccc------cceEEEEecC-cHHHHHHHHHhh-cCceEEee----
Confidence 389999999999999999999877 666554431 1144555544 678888888887 77765322
Q ss_pred hhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 416 PLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 416 ~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
.+.+-+|+---.+.+|++.++..+.
T Consensus 454 --------d~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 454 --------DGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred --------cCceEEeecccccHHHHHHHHHHHc
Confidence 6789999998889999999998876
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-09 Score=92.43 Aligned_cols=293 Identities=14% Similarity=0.152 Sum_probs=176.5
Q ss_pred HHHHHHHHHHH-cCCCCC----CcE--EEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCC-e
Q 012718 113 YELARKKVAAF-INASDS----GEI--VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-N 184 (458)
Q Consensus 113 ~~~~~~~la~~-~g~~~~----~~v--~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~-~ 184 (458)
++.+++..+++ +|.+++ +.+ +-+-|||.|+.+.+..+. .+-....|.++.|++..+.. +++..|. +
T Consensus 76 l~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~--~~~~~~~VY~SnPTW~nH~~----if~~aGf~t 149 (410)
T KOG1412|consen 76 LPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLA--TFYNKNTVYVSNPTWENHHA----IFEKAGFTT 149 (410)
T ss_pred chhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHH--HhcccceeEecCCchhHHHH----HHHHcCCce
Confidence 34455555444 354422 232 556799999999988774 23346689999999997644 4455584 4
Q ss_pred EEEEeCC--CCCCCCHHHHHHhhcCCc--eEEEEecc-cCcCccccc---HHHHHHHHHhcCcEEEEecccc-CCcccCC
Q 012718 185 LKFLNLN--DDESPDLDKLKEMLSRKT--KLVVIHHI-SNMLASILP---IEEIVHWSHDVGAKVLVDACQS-VPHMVVD 255 (458)
Q Consensus 185 ~~~v~~~--~~~~~d~~~l~~~l~~~~--~~v~~~~~-~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~-~g~~~~~ 255 (458)
+..++.- ++-.+|++.+...|...+ .++++..+ +||||+-.. +..|++..++++...+.|.+|- +..-.++
T Consensus 150 v~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~ 229 (410)
T KOG1412|consen 150 VATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLD 229 (410)
T ss_pred eeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCcc
Confidence 5555432 335678888877776644 44444444 899998776 5677888888999999999865 3333333
Q ss_pred CCCC--------CC-cEEEecccCCCCCCc--eeEEEE--e-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCC
Q 012718 256 VQGL--------DA-DFLVASSHKMCGPTG--IGFLFG--K-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGT 321 (458)
Q Consensus 256 ~~~~--------~~-d~~~~s~~K~~gp~g--~G~l~~--~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt 321 (458)
-+.+ +. -|++-||.|-||.++ +|-+.+ + +..+..+...+. ...|-+.+.
T Consensus 230 ~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~-----------------lviR~~~SN 292 (410)
T KOG1412|consen 230 ADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLT-----------------LVIRSNWSN 292 (410)
T ss_pred ccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHH-----------------HHHhhccCC
Confidence 3222 23 456669999888776 555543 2 222222221110 001222223
Q ss_pred CCHHHHHHHHHHH------HHHHHhCHHHHHHHHHHHHHHHHHHHhcC--CC-EEEeCCCCCCcCccccEEEEEeCCCCh
Q 012718 322 PAIGEAIGLGAAI------DYLSTIGMQKIHAYEMELAKYLYENLLSI--PN-IRIYGPKPSEHVQRAALCSFNVENIHP 392 (458)
Q Consensus 322 ~~~~~~~~l~~al------~~~~~~g~~~~~~~~~~l~~~l~~~L~~~--~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 392 (458)
|+..+.-.....| +.+.+ .+..+..|+++++..|.+.|.++ || +.-. .++.++ |.+.|.++
T Consensus 293 PPAyGArIV~kvL~tP~lre~W~~-sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI-------~~QiGM--FSyTGLtp 362 (410)
T KOG1412|consen 293 PPAYGARIVHKVLSTPELREQWIQ-SIKTMSSRIKKMRTALRDHLVALKTPGTWDHI-------TQQIGM--FSYTGLTP 362 (410)
T ss_pred CcchhhHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH-------Hhhccc--eeecCCCH
Confidence 3332222222222 22222 36788899999999999999876 22 1111 122344 55567776
Q ss_pred HHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 393 TDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 393 ~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+ ++.|.+++.|++.+. | ||+++. .+...+|...++|++.++.+..
T Consensus 363 ~q-V~~li~~h~vyLl~~--------------G--RInisG-LN~~NveyVAkAIde~Vr~~~~ 408 (410)
T KOG1412|consen 363 AQ-VDHLIENHKVYLLSD--------------G--RINISG-LNMKNVEYVAKAIDETVRAIKS 408 (410)
T ss_pred HH-HHHHHHhceEEEecC--------------C--cEeeec-cccccHHHHHHHHHHHHHhhcc
Confidence 55 455666669988542 2 777765 3557999999999999987654
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.6e-08 Score=85.86 Aligned_cols=172 Identities=22% Similarity=0.266 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHcCCCCCCcE-EEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHH-------HHHHcCC
Q 012718 112 EYELARKKVAAFINASDSGEI-VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL-------VAQKTGA 183 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v-~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-------~a~~~g~ 183 (458)
..+.+.+..|+.+|+... -| .-.-|+|+|+..++.++ ++|||+.+.-...-+-++.-... ..+..|+
T Consensus 66 GRdtLe~vyA~vf~aE~a-~VRpq~isGTHAI~~aLfg~----LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi 140 (416)
T COG4100 66 GRDTLERVYAQVFGAEAA-LVRPQIISGTHAIACALFGI----LRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGI 140 (416)
T ss_pred chhHHHHHHHHHhccccc-eeeeeeecchhHHHHHHHhc----cCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCc
Confidence 344577888999999854 22 12247789999999887 89999987665444322211110 1123477
Q ss_pred eEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc-------ccHHHHHHHHHh--cCcEEEEeccccCCcccC
Q 012718 184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI-------LPIEEIVHWSHD--VGAKVLVDACQSVPHMVV 254 (458)
Q Consensus 184 ~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~-------~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~ 254 (458)
+...+|+..+|.+|.+.++..+++++++|.+..- +|.- ..++++.++.++ .+++++||.+|+--....
T Consensus 141 ~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS---~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~ 217 (416)
T COG4100 141 KYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRS---KGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEK 217 (416)
T ss_pred ceeecccccCCcccHHHHHHhcCccceEEEEEec---cCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhcc
Confidence 8899999999999999999999999999987654 4432 235666666776 479999999999665555
Q ss_pred CCCCCCCcEEEecccCCCCC---CceeEEEEeccccccCC
Q 012718 255 DVQGLDADFLVASSHKMCGP---TGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 255 ~~~~~~~d~~~~s~~K~~gp---~g~G~l~~~~~~~~~l~ 291 (458)
.....|+|++.+|+-|--|. .-.|++..+.++++...
T Consensus 218 EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~ 257 (416)
T COG4100 218 EPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA 257 (416)
T ss_pred CccccchhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence 56677899999999994332 22799999999887654
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-07 Score=83.95 Aligned_cols=319 Identities=14% Similarity=0.113 Sum_probs=184.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CCCC----CCcEEE--eCChhHHHHHHH
Q 012718 74 AATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASD----SGEIVF--TKNATEAINLVA 146 (458)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~~----~~~v~~--t~g~t~a~~~~~ 146 (458)
.+-....+.|.+|-.+.... +.+. . +-....+.+..+..+++. |... +..|+. |=+||.|+.+..
T Consensus 66 ~gKp~vL~~VrkAE~ql~~~---~ldK-E----YlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga 137 (427)
T KOG1411|consen 66 NGKPYVLPSVRKAEQQLASL---SLDK-E----YLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGA 137 (427)
T ss_pred CCCeeeeHHHHHHHHHHhhh---cccc-h----hccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHH
Confidence 33344566676665554431 1111 0 112233445555555554 3321 124543 458999999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhcC---CceEEEEecccCcC
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR---KTKLVVIHHISNML 221 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~t 221 (458)
..+. ..-++..|.+++|++..+...+ ...|..+..+... ....+|.+.+.+.+.. +..+++-...+|||
T Consensus 138 ~Fl~--~f~~~~~I~ip~PTWgNh~~if----~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPT 211 (427)
T KOG1411|consen 138 EFLA--RFYPSRDIYIPDPTWGNHKNIF----KDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPT 211 (427)
T ss_pred HHHH--hhccccceeecCCcccccCccc----cccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCC
Confidence 8875 3556889999999998664444 4458887666543 3356677776666554 33455566669999
Q ss_pred ccccc---HHHHHHHHHhcCcEEEEeccccCCc-ccCCCCC--------CCCc-EEEecccCCCCCCc--eeEEEE---e
Q 012718 222 ASILP---IEEIVHWSHDVGAKVLVDACQSVPH-MVVDVQG--------LDAD-FLVASSHKMCGPTG--IGFLFG---K 283 (458)
Q Consensus 222 G~~~~---l~~i~~l~~~~~~~vivD~a~~~g~-~~~~~~~--------~~~d-~~~~s~~K~~gp~g--~G~l~~---~ 283 (458)
|.-.. +++|.++.++.+.+-+.|.+|-..+ -.++-++ .+.. +++-|+.|-+|.+| +|.+-+ +
T Consensus 212 GvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ 291 (427)
T KOG1411|consen 212 GVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKD 291 (427)
T ss_pred CCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecC
Confidence 98776 6688888899999999999976322 2222221 2344 45559999888777 555532 2
Q ss_pred cccccc----CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHH-------HHHHHhCHHHHHHHHHHH
Q 012718 284 SDLLSA----MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAI-------DYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 284 ~~~~~~----l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al-------~~~~~~g~~~~~~~~~~l 352 (458)
.+...+ ++.+.. --.++|+..+.......| +|+.+ ++....|+...
T Consensus 292 ad~A~rV~SQlk~liR---------------------pmYSnPP~hGArIv~~Il~d~~l~~~W~~e--vk~MadRi~~m 348 (427)
T KOG1411|consen 292 ADEAKRVESQLKILIR---------------------PMYSNPPLHGARIVATILSDPDLKNQWLGE--VKGMADRIISM 348 (427)
T ss_pred HHHHHHHHHHHHHHhc---------------------ccccCCCccchhhhhhccCChHHHHHHHHH--HHHHHHhhhhh
Confidence 222222 111111 011234443333333222 13333 56777888888
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC
Q 012718 353 AKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH 432 (458)
Q Consensus 353 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~ 432 (458)
++.|.+.|.+. +.......- ..+-+++|| .+.++++ ++.|.+++.|++.. --|||+.
T Consensus 349 R~~L~d~L~~~-gs~~~W~hI---~~QIGMF~f--Tgl~peQ-v~~l~ke~~iYmT~----------------dGRiS~a 405 (427)
T KOG1411|consen 349 RQQLFDALEKE-GSPGNWSHI---TKQIGMFCF--TGLNPEQ-VDWLTKEYHIYLTK----------------DGRISMA 405 (427)
T ss_pred HHHHhHHhhcC-CCCccHHHH---HHhhheeee--cCCCHHH-HHHHHhhheeeecc----------------CceEeec
Confidence 99999988764 221111100 122445444 4656654 55666666888742 2488887
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 012718 433 FYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 433 ~~~t~~di~~l~~~l~~~~~~ 453 (458)
. .+...+..+.++|.++.+.
T Consensus 406 G-~ss~nV~yLa~aih~vtk~ 425 (427)
T KOG1411|consen 406 G-LSSSNVPYLADAIHAVTKN 425 (427)
T ss_pred c-ccccCCcccchhhHhHhcC
Confidence 6 4557888898888877653
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-06 Score=78.82 Aligned_cols=207 Identities=14% Similarity=0.223 Sum_probs=132.3
Q ss_pred CHHHHHHhhcC------CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccCCcc--------cCCCCC
Q 012718 197 DLDKLKEMLSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM--------VVDVQG 258 (458)
Q Consensus 197 d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~--------~~~~~~ 258 (458)
.++++++.|.. .+..++++..++..|.-.- .+.+.+++++||+.+|||++|..|.. ..+++
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~- 332 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLD- 332 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCC-
Confidence 45556666643 3478889999998886664 88999999999999999999974332 22232
Q ss_pred CCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH
Q 012718 259 LDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS 338 (458)
Q Consensus 259 ~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 338 (458)
..+|+++ |||=|-.. | .+-.++++ --.++ +-|......+.-.+.+...++.++
T Consensus 333 ~PpD~vT--FSKK~q~g--G-ffh~~~fr-pn~pY---------------------rifNTWmGdP~k~lll~~vv~~I~ 385 (484)
T KOG1405|consen 333 SPPDVVT--FSKKFQTG--G-FFHDEEFR-PNEPY---------------------RIFNTWMGDPSKNLLLEEVVQEIK 385 (484)
T ss_pred CCcccee--hhhhhhcC--c-cccCcccC-CCchH---------------------HHhhhhcCChHHHHHHHHHHHHHh
Confidence 2378888 56633222 2 22223221 11111 113333344445566666666666
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCC
Q 012718 339 TIGMQKIHAYEMELAKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 339 ~~g~~~~~~~~~~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
+ +.+.+.+....+.|...|.++ |+. + ... ..+|.++.+..+. ...++++..++.+ |+.+. |+
T Consensus 386 ~---~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~-~-~~~----RGrGTF~a~d~ps~~~Rdk~i~~~~~n-Gv~~G-GC-- 452 (484)
T KOG1405|consen 386 R---EDLLNNVAHVGKALLKGLLELQAKYPGK-I-NNL----RGRGTFIAWDCPSGSIRDKLILIARLN-GVNLG-GC-- 452 (484)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhCchh-h-hcc----cccceEEEEeCCChHHHHHHHHHHHHc-Cceec-cc--
Confidence 5 455566666677777776544 332 1 111 3468899999884 3456788888888 98873 21
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
| ...||+-+++.-++...+-+++.++++++.
T Consensus 453 --------g-~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 453 --------G-DKSIRFRPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred --------c-cceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence 1 457999888777888999999999998864
|
|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-07 Score=89.75 Aligned_cols=333 Identities=18% Similarity=0.151 Sum_probs=200.7
Q ss_pred EEecCCCCCCCcHHHHHHHHHHH-HHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC-CcEEEeCChhHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYY-EAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVA 146 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~a~~~~~ 146 (458)
-|+|++..+...++..+...... ...+.|+| .....+......+++.|-.+..+++.... ++++|+. .|+|+..++
T Consensus 22 ~yldhag~tl~sesq~~g~~~~sq~~e~~nph-s~~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp~-~t~al~~va 99 (728)
T KOG2142|consen 22 AYLDHAGRTLFSESQLEGVAFQSQSSENANPH-SHLGTSRSLARLVAQVRLRILALFNTTAFDYEVSLPA-LTEALKLVA 99 (728)
T ss_pred HHHHhhhhhhhhhcccchhhhhhhccccCCCc-ccccchHHHHHHHHHHHHHHHHHhccccccccchhHH-HHHHHHHHH
Confidence 38999999888877776643332 23445554 33444444566777777778888887644 4788888 999999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHH-HHHHH-HcCCeEEEE-eCC---CCCCCCHHHHHHhhc-CCceEEEEecccC
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPW-QLVAQ-KTGANLKFL-NLN---DDESPDLDKLKEMLS-RKTKLVVIHHISN 219 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~-~~~a~-~~g~~~~~v-~~~---~~~~~d~~~l~~~l~-~~~~~v~~~~~~n 219 (458)
.++.. ...+.+|-=...+++.+.... ..++. ..|+.+..+ ... +.....+.. .... ....++......|
T Consensus 100 e~fp~--~s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~q~~~i~~~~~~sls~--~~~~ls~~~L~~g~a~~n 175 (728)
T KOG2142|consen 100 EAFPF--YSQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYSQTNEISDSEEFSLSE--SEANLSEHSLFGGAAQSN 175 (728)
T ss_pred HhCcc--ccccccccchhhhhhcccccccceeeeeeeccceEEeeeeeeccccccccccc--cccCcccchhcccchhcc
Confidence 99853 445555544433333222111 11111 113333333 111 111111111 1111 1346777888888
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcc
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEM 299 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~ 299 (458)
..|..+-..-+-.+.-..+..+++|.+.-..+.++++....+|++.. +.|+||-+- |.+.+..+..+.. |++.
T Consensus 176 feg~kik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~f~~~~~-lltiFgyet-gAvlv~~r~A~~~-----Ggkt 248 (728)
T KOG2142|consen 176 FEGDKIKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYPFDFNPK-LLTIFGYET-GAVLVMNRSAELK-----GGKT 248 (728)
T ss_pred cccceeeeeeecccccCCceEEEEEeecccccccchHhhCCCcccch-heeecCCCc-hhhHHHhhhhHhh-----cCcc
Confidence 88876443333333335678999999999999999999999999999 999999442 5555444332222 3333
Q ss_pred eEeeecCCCCC---CCCCCccCCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHhcC----CCEEEeC
Q 012718 300 ISDVFLDHSTF---ADPPSRFEAGTPAIGEAIGLGAAIDYLSTI--GMQKIHAYEMELAKYLYENLLSI----PNIRIYG 370 (458)
Q Consensus 300 ~~~~~~~~~~~---~~~~~~~~~gt~~~~~~~~l~~al~~~~~~--g~~~~~~~~~~l~~~l~~~L~~~----~~~~~~~ 370 (458)
.+..+.-...| .....||+.|+.+...++.+.-....+... ++..+..+...+.+++.-.|.+. |.++.++
T Consensus 249 ~sa~f~wp~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~~lG~kdmd~yg 328 (728)
T KOG2142|consen 249 ASAEFSWPMLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDALALGPKDMDSYG 328 (728)
T ss_pred ceeecccchHHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhhhccCcchHhhhh
Confidence 33222111111 133468889998888777777666666554 68888899999999998888764 3344444
Q ss_pred CCCCCcCccccEEEEEeCCCChH----HHHHHHhhhcCeEeccCCCCCh
Q 012718 371 PKPSEHVQRAALCSFNVENIHPT----DIATLLDQQYGVATRSGHHCAQ 415 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~~~~~----~~~~~l~~~~gi~~~~g~~~~~ 415 (458)
.....++..++++.|.+...++. -.++... -++|..++|++|+.
T Consensus 329 lS~f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~-i~~l~lrtGcfcn~ 376 (728)
T KOG2142|consen 329 LSLFQPDFQGPSFYFVFGRDDPSGFGCLEVKKSA-ISGLELRTGCFCNI 376 (728)
T ss_pred hhccCccceeeeEEEEeccCCCCceeeeeeehhh-hhceeccCCCCCCC
Confidence 43334456788888887532221 2233333 23899999998875
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.7e-05 Score=64.89 Aligned_cols=174 Identities=13% Similarity=0.140 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCCCCCcEEEeC-ChhHHHHHHHHHcCCCCCCCCCE-EEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC
Q 012718 115 LARKKVAAFINASDSGEIVFTK-NATEAINLVAYSWGLSNLKSGDE-VILTVAEHHSAIVPWQLVAQKTGANLKFLNLND 192 (458)
Q Consensus 115 ~~~~~la~~~g~~~~~~v~~t~-g~t~a~~~~~~~l~~~~~~~g~~-vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~ 192 (458)
++.+..-.+.|.....+.++++ .+-..+.+.+.+|+ .-+|+.+ |+.+..+-.|....+.. .|.+++.+..--
T Consensus 61 e~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r--~krpkakyiiw~ridqks~~ksi~~----agfepiiie~i~ 134 (432)
T KOG3843|consen 61 EFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLR--HKRPKAKYIIWLRIDQKSCFKSIIH----AGFEPIIIENIL 134 (432)
T ss_pred HHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHh--hcCCcccEEEEEecchHHHHHHHHh----cCCCceeeeccc
Confidence 3444445666665433333333 22234555555564 3445444 55566666665433333 388887776443
Q ss_pred C---CCCCHHHHHHhhcC-Cce-EEEEecccCcCcccc--cHHHHHHHHHhcCcEEEEeccccCCccc-CC----CCCC-
Q 012718 193 D---ESPDLDKLKEMLSR-KTK-LVVIHHISNMLASIL--PIEEIVHWSHDVGAKVLVDACQSVPHMV-VD----VQGL- 259 (458)
Q Consensus 193 ~---~~~d~~~l~~~l~~-~~~-~v~~~~~~n~tG~~~--~l~~i~~l~~~~~~~vivD~a~~~g~~~-~~----~~~~- 259 (458)
+ ..-|++.+++.+.+ +.. ++++-...+...-.. .+++|+.+|..|+++-+|..+|++-... +. -.+.
T Consensus 135 d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~g 214 (432)
T KOG3843|consen 135 DGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECG 214 (432)
T ss_pred cchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhc
Confidence 3 23488888888876 333 333332211111111 2999999999999999999999864421 00 0111
Q ss_pred CCcEEEecccC-CCCCCceeEEE-EeccccccCCCcc
Q 012718 260 DADFLVASSHK-MCGPTGIGFLF-GKSDLLSAMPPFL 294 (458)
Q Consensus 260 ~~d~~~~s~~K-~~gp~g~G~l~-~~~~~~~~l~~~~ 294 (458)
..|.++-|+.| +..|-|.+++. +++..++.+...+
T Consensus 215 rida~vqsldknf~vpvggaiia~fk~n~iq~iak~y 251 (432)
T KOG3843|consen 215 RIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAKMY 251 (432)
T ss_pred cHHHHHHHhhhcceeecchhHhhHhHHHHHHHHHHhC
Confidence 27888999999 55677644444 3444555544333
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00094 Score=55.38 Aligned_cols=52 Identities=21% Similarity=0.320 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHc----C----CCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCcc
Q 012718 113 YELARKKVAAFI----N----ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHS 169 (458)
Q Consensus 113 ~~~~~~~la~~~----g----~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s 169 (458)
..++|+++|+++ | .++ ++|++|+|+++++..++.++ +++||.|+++.|.|++
T Consensus 94 ~~~lR~AiA~~l~~~~g~~v~~~p-d~Ivvt~Ga~~al~~l~~~l----~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 94 LANFRKAIANFMAEARGGRVKFDA-DMIVLSAGATAANEIIMFCI----ADPGDAFLVPTPYYAA 153 (153)
T ss_pred cHHHHHHHHHHHHHHhCCCCccch-hheEEcCCHHHHHHHHHHHH----cCCCCEEEEeCCCCCC
Confidence 335666666655 4 233 49999999999999999998 7999999999999973
|
|
| >KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.3 Score=43.02 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=111.5
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-------CCCCCHHHHHHhhcC------CceEEEEecccCcCcccc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-------DESPDLDKLKEMLSR------KTKLVVIHHISNMLASIL 225 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-------~~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~ 225 (458)
.++++...|.- ....+|+..|+..+.+.+.. +|.+|...+++.|++ ++-+++-.-..+-.|...
T Consensus 233 t~YiS~alh~~---l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnD 309 (838)
T KOG0630|consen 233 TFYISEALHMD---LLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQND 309 (838)
T ss_pred eEEEcccccHH---HHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchH
Confidence 45555555442 23456777887654444321 268899999999875 234555556677788888
Q ss_pred cHHHHHHHHHhcC-cEEEEeccccCCcc----cCCCCC---CCCcEEEecccCCCCCCceeEEEEeccccccCCCccccC
Q 012718 226 PIEEIVHWSHDVG-AKVLVDACQSVPHM----VVDVQG---LDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGG 297 (458)
Q Consensus 226 ~l~~i~~l~~~~~-~~vivD~a~~~g~~----~~~~~~---~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~ 297 (458)
.+-+|.++|++++ .|++.-+ |++.++ |-+... ...|.+.....-|+|.+..-++.....+... ..
T Consensus 310 mi~kildi~eahakfWLHasG-haiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg~----aa-- 382 (838)
T KOG0630|consen 310 MILKILDICEAHAKFWLHASG-HAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEGS----AA-- 382 (838)
T ss_pred HHHHHHHHHHHhhheeEeecc-chhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeecccccc----cc--
Confidence 8999999999987 8888654 233222 111100 1156666677678886555555544332111 00
Q ss_pred cceEeeecCCCCCCCCCCccCCCC--CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGT--PAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
..|+... .--...+.++.++..+....+....+..-.+.+.+.+.+.+++++++.+..+
T Consensus 383 -----------------Safesdpi~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemig~dn 443 (838)
T KOG0630|consen 383 -----------------SAFESDPILREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMIGHDN 443 (838)
T ss_pred -----------------hhcccChHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEeccCC
Confidence 1111100 0001224566667777654455555666678888999999999999887654
|
|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.09 Score=52.43 Aligned_cols=170 Identities=19% Similarity=0.159 Sum_probs=118.0
Q ss_pred HHHHHHHHcCCCCCC-cEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchH-HHHHHHHHcCCeEEEEeCC-C
Q 012718 116 ARKKVAAFINASDSG-EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIV-PWQLVAQKTGANLKFLNLN-D 192 (458)
Q Consensus 116 ~~~~la~~~g~~~~~-~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~-~~~~~a~~~g~~~~~v~~~-~ 192 (458)
+++.+-.+++.+..+ .+++|.+-..+..+.+.... .+-... ++.-.+|++--. -+...|+..|+++...-.. +
T Consensus 181 ik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~---f~~~~~-lltiFgyetgAvlv~~r~A~~~Ggkt~sa~f~wp 256 (728)
T KOG2142|consen 181 IKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYP---FDFNPK-LLTIFGYETGAVLVMNRSAELKGGKTASAEFSWP 256 (728)
T ss_pred eeeeeecccccCCceEEEEEeecccccccchHhhCC---Ccccch-heeecCCCchhhHHHhhhhHhhcCccceeecccc
Confidence 677788888887664 55789998889999998763 222223 777778876322 2334566667776655443 2
Q ss_pred CCCCCHHHHHHhhcCC--------ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccC---CCCCCCC
Q 012718 193 DESPDLDKLKEMLSRK--------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV---DVQGLDA 261 (458)
Q Consensus 193 ~~~~d~~~l~~~l~~~--------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~---~~~~~~~ 261 (458)
...+--+++++.+..+ ..+.+++..+-.||...++.+. .++.+.++.+..|.-+- |.-.+ .+..+.+
T Consensus 257 ~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wm-t~al~~~whvlLda~~l-G~kdmd~yglS~f~P 334 (728)
T KOG2142|consen 257 MLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWM-TLALANNWHVLLDALAL-GPKDMDSYGLSLFQP 334 (728)
T ss_pred hHHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHH-HHHHhhhHHHHHhhhcc-CcchHhhhhhhccCc
Confidence 2333445677777652 2466788889999999999887 67888999999998866 33222 3445569
Q ss_pred cEEEecccCCCC---CCceeEEEEeccccccCC
Q 012718 262 DFLVASSHKMCG---PTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 262 d~~~~s~~K~~g---p~g~G~l~~~~~~~~~l~ 291 (458)
|+...++++.+| |.|.|++.+.+-.+..+.
T Consensus 335 dfqg~sf~fv~g~d~psgfGcl~VkKs~i~~l~ 367 (728)
T KOG2142|consen 335 DFQGPSFYFVFGRDDPSGFGCLEVKKSAISGLE 367 (728)
T ss_pred cceeeeEEEEeccCCCCceeeeeeehhhhhcee
Confidence 999999999766 566999999886654443
|
|
| >TIGR03573 WbuX N-acetyl sugar amidotransferase | Back alignment and domain information |
|---|
Probab=80.75 E-value=22 Score=33.97 Aligned_cols=124 Identities=6% Similarity=-0.003 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCCCC--CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchH--HHHHHHHHcCCeEEEEe
Q 012718 114 ELARKKVAAFINASD--SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIV--PWQLVAQKTGANLKFLN 189 (458)
Q Consensus 114 ~~~~~~la~~~g~~~--~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~--~~~~~a~~~g~~~~~v~ 189 (458)
+++++.+.++-+... -+.+|-.+||-.+..++..... .+.-...+++.++.+.+... .+..+++..|+....+.
T Consensus 43 ~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~--~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~ 120 (343)
T TIGR03573 43 KELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKK--KLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTIT 120 (343)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHH--HhCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEe
Confidence 344444444433222 2255667888777776643321 11111122455666654322 46677888899988887
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
++ .+.+......... -...+..++. ......+.++|+++|+.+|+.+.++
T Consensus 121 ~d------~~~~~~l~~~~~~--~~~~pc~~c~-~~~~~~l~~~A~~~gi~~Il~G~~~ 170 (343)
T TIGR03573 121 IN------PETFRKLQRAYFK--KVGDPEWPQD-HAIFASVYQVALKFNIPLIIWGENI 170 (343)
T ss_pred CC------HHHHHHHHHHHHh--ccCCCchhhh-hHHHHHHHHHHHHhCCCEEEeCCCH
Confidence 64 3333332221111 1122222222 1225688899999999999988865
|
This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 458 | ||||
| 1t3i_A | 420 | Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE De | 1e-144 | ||
| 1i29_A | 406 | Crystal Structure Of Csdb Complexed With L-Propargy | 9e-97 | ||
| 1jf9_A | 408 | Crystal Structure Of Selenocysteine Lyase Length = | 1e-96 | ||
| 1kmj_A | 406 | E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE | 2e-95 | ||
| 1c0n_A | 406 | Csdb Protein, Nifs Homologue Length = 406 | 4e-94 | ||
| 4eb5_A | 382 | A. Fulgidus Iscs-Iscu Complex Structure Length = 38 | 5e-23 | ||
| 1ecx_A | 384 | Nifs-Like Protein Length = 384 | 4e-20 | ||
| 3cai_A | 406 | Crystal Structure Of Mycobacterium Tuberculosis Rv3 | 8e-19 | ||
| 1eg5_A | 384 | Nifs-like Protein Length = 384 | 9e-18 | ||
| 3lvj_A | 423 | Crystal Structure Of E.Coli Iscs-Tusa Complex (Form | 1e-15 | ||
| 1p3w_B | 404 | X-Ray Crystal Structure Of E. Coli Iscs Length = 40 | 5e-15 | ||
| 1elq_A | 390 | Crystal Structure Of The Cystine C-S Lyase C-Des Le | 7e-14 | ||
| 1n2t_A | 386 | C-Des Mutant K223a With Gly Covalenty Linked To The | 7e-13 | ||
| 3vax_A | 400 | Crytal Structure Of Dnda From Streptomyces Lividans | 1e-10 | ||
| 3a9x_A | 432 | Crystal Structure Of Rat Selenocysteine Lyase Lengt | 4e-09 | ||
| 3gzd_A | 440 | Human Selenocysteine Lyase, P1 Crystal Form Length | 5e-09 | ||
| 3gzc_A | 440 | Structure Of Human Selenocysteine Lyase Length = 44 | 5e-09 | ||
| 1qz9_A | 416 | The Three Dimensional Structure Of Kynureninase Fro | 2e-06 | ||
| 2w8w_A | 427 | N100y Spt With Plp-Ser Length = 427 | 2e-06 | ||
| 2w8j_A | 427 | Spt With Plp-Ser Length = 427 | 3e-06 | ||
| 2jgt_A | 422 | Low Resolution Structure Of Spt Length = 422 | 3e-06 | ||
| 4ixo_A | 380 | X-ray Structure Of Nifs-like Protein From Rickettsi | 7e-06 | ||
| 2w8u_A | 427 | Spt With Plp, N100y Length = 427 | 1e-05 | ||
| 2w8t_A | 427 | Spt With Plp, N100c Length = 427 | 1e-05 | ||
| 2w8v_A | 427 | Spt With Plp, N100w Length = 427 | 1e-05 | ||
| 2jg2_A | 422 | High Resolution Structure Of Spt With Plp Internal | 1e-05 |
| >pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE Desulfurase From Synechocystis Pcc 6803 Length = 420 | Back alignment and structure |
|
| >pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With L-Propargylglycine Length = 406 | Back alignment and structure |
|
| >pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase Length = 408 | Back alignment and structure |
|
| >pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE PERSULFIDE Intermediate (Residue Css). Length = 406 | Back alignment and structure |
|
| >pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue Length = 406 | Back alignment and structure |
|
| >pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure Length = 382 | Back alignment and structure |
|
| >pdb|1ECX|A Chain A, Nifs-Like Protein Length = 384 | Back alignment and structure |
|
| >pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c Protein Length = 406 | Back alignment and structure |
|
| >pdb|1EG5|A Chain A, Nifs-like Protein Length = 384 | Back alignment and structure |
|
| >pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1) Length = 423 | Back alignment and structure |
|
| >pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs Length = 404 | Back alignment and structure |
|
| >pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des Length = 390 | Back alignment and structure |
|
| >pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The Plp-Cofactor Length = 386 | Back alignment and structure |
|
| >pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans Length = 400 | Back alignment and structure |
|
| >pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase Length = 432 | Back alignment and structure |
|
| >pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form Length = 440 | Back alignment and structure |
|
| >pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase Length = 440 | Back alignment and structure |
|
| >pdb|1QZ9|A Chain A, The Three Dimensional Structure Of Kynureninase From Pseudomonas Fluorescens Length = 416 | Back alignment and structure |
|
| >pdb|2W8W|A Chain A, N100y Spt With Plp-Ser Length = 427 | Back alignment and structure |
|
| >pdb|2W8J|A Chain A, Spt With Plp-Ser Length = 427 | Back alignment and structure |
|
| >pdb|2JGT|A Chain A, Low Resolution Structure Of Spt Length = 422 | Back alignment and structure |
|
| >pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia Africae Esf-5 Length = 380 | Back alignment and structure |
|
| >pdb|2W8U|A Chain A, Spt With Plp, N100y Length = 427 | Back alignment and structure |
|
| >pdb|2W8T|A Chain A, Spt With Plp, N100c Length = 427 | Back alignment and structure |
|
| >pdb|2W8V|A Chain A, Spt With Plp, N100w Length = 427 | Back alignment and structure |
|
| >pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal Aldimine Length = 422 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420 | Back alignment and structure |
|---|
Score = 717 bits (1853), Expect = 0.0
Identities = 255/417 (61%), Positives = 313/417 (75%), Gaps = 3/417 (0%)
Query: 39 VTSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNV 98
+ + SL R DFPIL+QE+ G LVYLDNAATSQKP AVL+ L +YYE N+NV
Sbjct: 1 MVALQIPSLAATVRQDFPILNQEING-HPLVYLDNAATSQKPRAVLEKLMHYYENDNANV 59
Query: 99 HRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158
HRG H LS +ATD YE R KVA FINA EIV+T+NATEAINLVAYSWG++NLK+GD
Sbjct: 60 HRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGD 119
Query: 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHIS 218
E+I TV EHHS +VPWQ+VA KTGA LKF+ L++ ES DL+ K +LS KTKLV + HIS
Sbjct: 120 EIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHIS 179
Query: 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIG 278
N L + P EEI +H GAKVLVDACQS PH +DVQ +D D+LVAS HKMC PTGIG
Sbjct: 180 NTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIG 239
Query: 279 FLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS 338
FL+GK ++L AMPPF GGGEMI++VF DH T + P +FEAGTPAI EAI LGAA+DYL+
Sbjct: 240 FLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT 299
Query: 339 TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATL 398
+GM+ IH YE+EL YL++ L IP +R+YGP P +H RAAL SFNV +H +D+AT+
Sbjct: 300 DLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNP-KHGDRAALASFNVAGLHASDVATM 358
Query: 399 LDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
+DQ G+A RSGHHC QPLHR + SARASL+FYNTKE++D F+ +L T+ FF+
Sbjct: 359 VDQD-GIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFS 414
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406 | Back alignment and structure |
|---|
Score = 707 bits (1827), Expect = 0.0
Identities = 185/404 (45%), Positives = 252/404 (62%), Gaps = 8/404 (1%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFP+L +EV G L YLD+AA++QKP V+ A +Y + VHRGIH LSA+AT+
Sbjct: 9 RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 67
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
+ E RK+ + FINA + E+VF + TE INLVA SWG SN+++GD +I++ EHH+ I
Sbjct: 68 KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ++ + GA L+ + LN D + L+ L + KT+L+ I H+SN+L + P+ E++
Sbjct: 128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GAKVLVD Q+V H VDVQ LD DF V S HK+ GPTGIG L+ K LL MP
Sbjct: 188 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247
Query: 292 PFLGGGEMISDV-FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEM 350
P+ GGG MI+ V + +T+ P RFEAGTP G IGLGAA++Y+S +G+ I YE
Sbjct: 248 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQ 307
Query: 351 ELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSG 410
L Y L S+P++ +YGP+ R + +FN+ H D+ + LD G+A R+G
Sbjct: 308 NLMHYALSQLESVPDLTLYGPQN-----RLGVIAFNLGKHHAYDVGSFLDNY-GIAVRTG 361
Query: 411 HHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454
HHCA PL Y V A RASL YNT E+VD + L
Sbjct: 362 HHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406 | Back alignment and structure |
|---|
Score = 582 bits (1502), Expect = 0.0
Identities = 90/413 (21%), Positives = 169/413 (40%), Gaps = 40/413 (9%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R P L V+ D A P +V + + ++ G H + ++
Sbjct: 17 RGLHPSL------GDGWVHFDAPAGMLIPDSVATTVSTAFRRSGAST-VGAHPSARRSAA 69
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
+ AR+ VA +NA D G +V + ++L+A + S G EVI++ + + I
Sbjct: 70 VLDAAREAVADLVNA-DPGGVVLGADRAVLLSLLAEASS-SRAGLGYEVIVSRLDDEANI 127
Query: 172 VPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEI 230
PW A + GA +K+ ++ + + + ++S+ T+LV ++ S L + + +
Sbjct: 128 APWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAM 187
Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM 290
HDVGA V+VD + P+ ++D++ DAD + ++H GP +F ++++
Sbjct: 188 TKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSF 247
Query: 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI---------- 340
+ +A P+R E G G G+ A+I+YL+ +
Sbjct: 248 GSV------------STNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRE 295
Query: 341 ----GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIA 396
MQ AY + YL +L S+P + + G + + SF V + +
Sbjct: 296 RLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPE----AQIPVVSFAVHKVPADRVV 351
Query: 397 TLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449
L +A + + V + L Y+T +VD+ + AL
Sbjct: 352 QRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390 | Back alignment and structure |
|---|
Score = 571 bits (1473), Expect = 0.0
Identities = 91/408 (22%), Positives = 158/408 (38%), Gaps = 38/408 (9%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
FP L Y + P L+A+ Y N I +
Sbjct: 8 LHQFPGLAN-------KTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIA-ANQHIQQ 59
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
R+ +A N I T N T ++V + + GDE++LT EH I
Sbjct: 60 LIAQLRQALAETFNVD-PNTITITDNVTTGCDIVLWGL---DWHQGDEILLTDCEHPGII 115
Query: 172 VPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229
Q +A + G +F + ++ L L KT+LV++ H+ +LP+ E
Sbjct: 116 AIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAE 175
Query: 230 IVHWSH----DVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKS 284
I+ + +VLVD QS + +D L+ D+ + HK GP G+G L+
Sbjct: 176 IMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHG 235
Query: 285 DLLSAM-PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343
D L + P ++G + + + +A+ RFE T A + GL AA+ G
Sbjct: 236 DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA 295
Query: 344 KIHA-YEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTD-IATLLDQ 401
+ + +++L+ L +P++ +A L SF V++ I L++
Sbjct: 296 EERYQAICQRSEFLWRGLNQLPHVHCLATSA----PQAGLVSFTVDSPLGHRAIVQKLEE 351
Query: 402 QYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449
Q + R+ A P RA H+ +E+++ + L +
Sbjct: 352 Q-RIYLRT---IADP--------DCIRACCHYITDEEEINHLLARLAD 387
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 363 bits (934), Expect = e-124
Identities = 68/410 (16%), Positives = 140/410 (34%), Gaps = 59/410 (14%)
Query: 63 YGSKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSA-KATDEYELARKKV 120
+K + +D T + +AL + + Y+ L K ++ ++
Sbjct: 4 RETKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQL 63
Query: 121 AAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK 180
F+ T A EA V +S K V++ H+S+ V +
Sbjct: 64 PKFLGCD---VARVTNGAREAKFAVMHSLA----KKDAWVVMDENCHYSSYVAAER---- 112
Query: 181 TGANLKFLNLNDDE--SPDLDKLKEMLSRKTK-----LVVIHHISNMLASILPIEEIVHW 233
G N+ + D + + + + K L +I + ++ +++I
Sbjct: 113 AGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKV 172
Query: 234 SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG-IGFLFGKSDLLSAMPP 292
+ +LV+ ++ M V ++ + ADF+V S HK +G IG + K + +
Sbjct: 173 CSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLR 232
Query: 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY--EM 350
+ + T I L A+ ++ ++I + E+
Sbjct: 233 -------------RSEKYKNKEVELLGCTARGATIITLMASFPHV----RERIKRWDEEV 275
Query: 351 ELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQ----QYGVA 406
E A+ + + I+ G P H L F+ E ++ +I+ Y
Sbjct: 276 EKARRFAAEMEKLG-IKQLGDNPHNH----DLMFFHAEVLY--EISKKAKGGRFFLYREL 328
Query: 407 TRSGHHCAQPLHRYLGVNASARASLHFYN-TKEDVDEFIHALNETVSFFN 455
H +P + L Y + E+VD ++A E + ++
Sbjct: 329 KSRKIHGIKPG-------LTRYFKLSTYGLSDEEVDYVLNAFKEIIEKYS 371
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416 | Back alignment and structure |
|---|
Score = 261 bits (669), Expect = 2e-83
Identities = 72/411 (17%), Positives = 137/411 (33%), Gaps = 42/411 (10%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R F + + ++YLD + +P+A L Q N A D
Sbjct: 20 RQQFALP-------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNS-AGWRD 71
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLV---AYSWGLSNLKSGDEVILTVAEHH 168
E ++A I A GE+V T + + V A + ++ +
Sbjct: 72 LSERLGNRLATLIGA-RDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFP 130
Query: 169 SAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228
+ + + +A ++L + + + T +V++ H++ + ++
Sbjct: 131 TDLYIAEGLADMLQ-----QGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQ 185
Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSDL 286
+ SH+ GA + D S + VD+ AD+ + ++K GP F++ L
Sbjct: 186 ALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQL 245
Query: 287 LSAMPPFLGGGEMISDVFLDHSTFADPPS--RFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344
+P L G S F + R+ GT I + +D + M
Sbjct: 246 CDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMAS 305
Query: 345 IHAYEMELAKYL---YENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQ 401
+ + L E + + + P+ EH +R + SF + L
Sbjct: 306 LRRKSLALTDLFIELVEQRCAAHELTLVTPR--EHAKRGSHVSFEHP--EGYAVIQALID 361
Query: 402 QYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHALNETV 451
+ GV G + P R Y T +V + + L E +
Sbjct: 362 R-GVI---GDYRE-PRIM--------RFGFTPLYTTFTEVWDAVQILGEIL 399
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 1e-47
Identities = 101/400 (25%), Positives = 168/400 (42%), Gaps = 44/400 (11%)
Query: 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS 127
+ Y D + +L+A+ Y N +H KA + + AR+KVA +N
Sbjct: 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNG- 58
Query: 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQLVAQKTGANLK 186
G +VFT ATEA NL + + N + G ++++ EH S I P L QK G ++
Sbjct: 59 GGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL--QKQGFEVE 116
Query: 187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
++ + D+ + + L T LV + H +N + +I P+EEI A + +DA
Sbjct: 117 YIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDAT 175
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGG--EMISDVF 304
SV + VDV+ + AD L SS+ + GP G+G L+ + + + P + GG E
Sbjct: 176 ASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQEN----- 228
Query: 305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364
+G+ + +G G A + ++ + ++ L + +N+L I
Sbjct: 229 -----------GLRSGSENVPSIVGFGKAAE-ITAMEWREEAERLRRLRDRIIDNVLKIE 276
Query: 365 NIRIYGPKPSEHVQRAALC-SFNVENIHPTDIATLLDQQYGVATRSGHHCA----QPLH- 418
+ G +R + I I LD G+ +G C+ QP H
Sbjct: 277 ESYLNGHP----EKRLPNNVNVRFSYIEGESIVLSLDMA-GIQASTGSACSSKTLQPSHV 331
Query: 419 -RYLGVN-ASARASLHF----YNTKEDVDEFIHALNETVS 452
G+ A +L YNT EDVD + L +
Sbjct: 332 LMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE 371
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Length = 423 | Back alignment and structure |
|---|
Score = 166 bits (424), Expect = 4e-47
Identities = 95/404 (23%), Positives = 164/404 (40%), Gaps = 44/404 (10%)
Query: 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNS--NVHRGIHFLSAKATDEYELARKKVAAF 123
K +YLD +AT+ V + + + + N H +A + ++AR ++A
Sbjct: 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADL 80
Query: 124 INASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQLVAQKTG 182
+ A D EIVFT ATE+ NL K G +I + EH + + QL ++ G
Sbjct: 81 VGA-DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL--EREG 137
Query: 183 ANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242
+ +L + DL +L+ + T LV I H++N + + I I G
Sbjct: 138 FEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYH 197
Query: 243 VDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGG--EMI 300
VDA QSV + +D+ L D + S HK+ GP GIG L+ + + + GG E
Sbjct: 198 VDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHE-- 255
Query: 301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360
+GT + + +G+G A ++ M L L+ +
Sbjct: 256 --------------RGMRSGTLPVHQIVGMGEAYR-IAKEEMATEMERLRGLRNRLWNGI 300
Query: 361 LSIPNIRIYGPKPSEHVQRAALC-SFNVENIHPTDIATLLDQQYGVATRSGHHCA----Q 415
I + + G A + + + + L +A SG C +
Sbjct: 301 KDIEEVYLNGDL----EHGAPNILNVSFNYVEGESLIMALK---DLAVSSGSACTSASLE 353
Query: 416 PLH--RYLGVN-ASARASLHF----YNTKEDVDEFIHALNETVS 452
P + R LG+N A +S+ F + T+E++D I + +++
Sbjct: 354 PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG 397
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 6e-47
Identities = 66/425 (15%), Positives = 120/425 (28%), Gaps = 51/425 (12%)
Query: 56 PILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYEL 115
P+ V + +Y + +P V L+ + + G E
Sbjct: 56 PVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDES 115
Query: 116 ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQ 175
+ + A + EI T ++L+ S +++L S +
Sbjct: 116 IVGLMKDIVGA-NEKEIALMNALTVNLHLLMLS-FFKPTPKRYKILLEAKAFPSDHYAIE 173
Query: 176 LVAQKTGANLKFLNLNDD--------ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
Q G N++ D+ ++ E +++ + I
Sbjct: 174 SQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNI 233
Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSD 285
I G V D +V ++ + + DF S+K G GI F
Sbjct: 234 PAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEK 293
Query: 286 LLSAMPPFLGGGEMI--SDVFLDHSTFADPPS--RFEAGTPAIGEAIGLGAAIDYLSTIG 341
+ P L G S F + P F P I L A+++
Sbjct: 294 HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQAT 353
Query: 342 MQKIHAYEMELAKY---LYENLLSIPNIRIYGPK-----PSEHVQRAALCSFNVENIHPT 393
M+ + + L Y L ++ P PS +R +
Sbjct: 354 MKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-PNK 412
Query: 394 DIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR-------ASLHFYNTKEDVDEFIHA 446
D+ L+++ GV R A + YN+ DV +F +
Sbjct: 413 DVFQELEKR-------------------GVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNL 453
Query: 447 LNETV 451
L +
Sbjct: 454 LTSIL 458
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 6e-46
Identities = 93/401 (23%), Positives = 174/401 (43%), Gaps = 44/401 (10%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
VY DN AT++ VL+ + +Y N + H + +A E AR+KVA +
Sbjct: 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPN-SAHGMGIEANLHMEKAREKVAKVLGV-S 60
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQLVAQKTGANLKF 187
EI FT ATE+IN + + + K +I T EH + + L G +K+
Sbjct: 61 PSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYL--SMKGFKVKY 118
Query: 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL--VDA 245
+ ++ L++L++++ T LV I +N + +I P+E++ + L VDA
Sbjct: 119 VPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDA 178
Query: 246 CQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL-GGGEMISDVF 304
Q++ + ++ L+ D+ S+HK GP G+G + + + + P + GGG+
Sbjct: 179 VQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQE----- 231
Query: 305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364
+GT + +G A++ ++ + + + +L L L+++
Sbjct: 232 ----------RGLRSGTQNVPGIVGAARAME-IAVEELSEAAKHMEKLRSKLVSGLMNLG 280
Query: 365 NIRIYGPKPSEHVQRAALC-SFNVENIHPTDIATLLDQQYGVATRSGHHCA----QPLH- 418
I + S + NI + + LL YG+ + C + H
Sbjct: 281 AHIITPLE-----ISLPNTLSVSFPNIRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHV 334
Query: 419 -RYLGVN-ASARASLHF----YNTKEDVDEFIHALNETVSF 453
+GV+ A+ ++ YNT+E+VD F+ + E +SF
Sbjct: 335 LDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF 375
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* Length = 432 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 3e-41
Identities = 99/433 (22%), Positives = 157/433 (36%), Gaps = 67/433 (15%)
Query: 65 SKKLVYLDNAATSQKPIA--VLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAA 122
+ VY+D AT+ P+ V++A+ + N + KA D AR +A
Sbjct: 16 PNRKVYMDYNATT--PLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAK 72
Query: 123 FINASDSGEIVFTKNATEAINLV-----------------AYSWGLSNLKSGDEVILTVA 165
I +I+FT TE+ NLV + I
Sbjct: 73 MIGG-KPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTV 131
Query: 166 EHHSAIVPWQLVAQKTGANLKFLNLNDDE-SPDLDKLKEMLSRKTKLVVIHHISNMLASI 224
EH S +P + + + A + F+ ++ +++ + + T LV I +N I
Sbjct: 132 EHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVI 191
Query: 225 LPIEEI--------VHWSHDVGAKVL--VDACQSVPHMVVDVQGLDADFLVASSHKMCGP 274
+PI EI + +VL DA Q++ VDV+ L DFL HK GP
Sbjct: 192 MPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGP 251
Query: 275 TGIGFLF--GKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGA 332
IG L+ G L P GGG+ F GT GLG
Sbjct: 252 R-IGALYVRGVGKLTPLYPMLFGGGQE---------------RNFRPGTENTPMIAGLGK 295
Query: 333 AIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVENIH 391
A D L + + A+ ++ YL E L + RI+ V+R C+F+++
Sbjct: 296 AAD-LVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ 354
Query: 392 PTDIATLLDQQYGVATRSGHHCA-----QPLH--RYLGVN-ASARASLHF----YNTKED 439
L Q + G C +P G+ AR ++ T+ +
Sbjct: 355 LRGYMVLAQCQ-TLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAE 413
Query: 440 VDEFIHALNETVS 452
VD + L + V+
Sbjct: 414 VDLIVQDLKQAVN 426
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 7e-11
Identities = 32/246 (13%), Positives = 71/246 (28%), Gaps = 34/246 (13%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLV-VIHH-----ISNMLASILPI 227
+ + + L L + +KL E ++ + V +
Sbjct: 110 FVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLY------DT 163
Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSD 285
I + + D + ++ AD ++ S K C P GI +
Sbjct: 164 MMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLAC-PPGISVIVLAPR 222
Query: 286 LLSAMPPFLGGGEMISDVFLD----HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-I 340
+ + ++ + ++ D + F TPA+G + + + +
Sbjct: 223 GVERV----EKSKVRT-MYFDLKDALKNQERGQTPF---TPAVGILLQINERLKEIKKHG 274
Query: 341 GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLD 400
G A A + + + P+ + S + + DI L
Sbjct: 275 GADAEVARIASQAADFRAKIKDL-PFELVSESPA-----NGVTSVHPTTANAYDIFLKLK 328
Query: 401 QQYGVA 406
+YG+
Sbjct: 329 DEYGIW 334
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 36/202 (17%), Positives = 73/202 (36%), Gaps = 29/202 (14%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS--RKTKLV-VIHH-----ISNMLASIL 225
+A G + + PD+ + +L+ + ++H + N
Sbjct: 95 MVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLN------ 148
Query: 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGK 283
PI+E+ +H G +VDA S + +D+ L D+L++S++K C G G F+ +
Sbjct: 149 PIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANK-CIQGVPGFAFVIAR 207
Query: 284 SDLLSAM----PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339
L+A D++ D ++ T + A+ L+
Sbjct: 208 EQKLAACKGHSRSL------SLDLYAQWRCMEDNHGKW-RFTSPTHTVLAFAQALKELAK 260
Query: 340 I-GMQKIHAYEMELAKYLYENL 360
G+ H + + L +
Sbjct: 261 EGGVAARHQRYQQNQRSLVAGM 282
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 6e-08
Identities = 51/293 (17%), Positives = 100/293 (34%), Gaps = 79/293 (26%)
Query: 22 SAIRRFSSALCVSSSPSVTSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPI 81
+ + + S+ + SL F S
Sbjct: 7 FGVEEWLNVHENSAIYDIAGVSISSLT--LEELFA-------------------LSGTNP 45
Query: 82 -AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140
K LQ Y G +K V+ +I+ T AT
Sbjct: 46 EDFYKKLQGTKLNYGWI--EGS----------PAF-KKSVSQLYTGVKPEQILQTNGATG 92
Query: 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQL---VAQKTGANLKFLNLNDDES- 195
A LV YS ++ GD VI + P +Q + + GA + + ++
Sbjct: 93 ANLLVLYSL----IEPGDHVIS--------LYPTYQQLYDIPKSLGAEVDLWQIEEENGW 140
Query: 196 -PDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVD------- 244
PDL+KL++++ TK++ I++ +N +++ +EE+V + +VGA +L D
Sbjct: 141 LPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFS 200
Query: 245 --ACQSVPHM---VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAM 290
S+ + + V ++ ++ + G IG++ + +
Sbjct: 201 ELDVPSIIEVYDKGIAVNS------LSKTYSL---PGIRIGWVAANHQVTDIL 244
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Length = 393 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 9e-08
Identities = 56/305 (18%), Positives = 101/305 (33%), Gaps = 61/305 (20%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHI--SNMLASILPIEEI 230
+A + GA + + E L +++E L++ L+ + H S + P++
Sbjct: 113 AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQ--PLDGF 170
Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSDLLS 288
H +LVD+ S+ + + + D + +SS K P GI + +
Sbjct: 171 GELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNA-PPGISLIS-----FN 224
Query: 289 --AMPPFLGGGEMISDVFLDHSTFA-----DPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341
A + D + A + +R T + L ++ ++ G
Sbjct: 225 DKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQG 284
Query: 342 MQKIHAYEMELAKYLYENL----LSI----PNIR------IYGPK--PSEHVQRAALCSF 385
++ E +L+++L L P IR + P + L F
Sbjct: 285 LENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHF 344
Query: 386 NVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445
++E I+ L R G LG NA T E+VD
Sbjct: 345 SIE------ISGGLGPTEERVLRIGL---------LGYNA----------TTENVDRVAE 379
Query: 446 ALNET 450
AL E
Sbjct: 380 ALREA 384
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 49/300 (16%), Positives = 94/300 (31%), Gaps = 53/300 (17%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHI--SNMLASILPIEE 229
+ A++ +L + + +E+ D + +ML + +V + H + + PI+
Sbjct: 98 FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTIN--PIDA 155
Query: 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSDLL 287
I GA ++VDA S M + AD V +K P G+ + +
Sbjct: 156 IGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGA-PPGLTMMG-----V 209
Query: 288 S--AMPPFLGGGEMISDVFLDHSTFAD--PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343
S A L + + + TP++ E GL A+D G +
Sbjct: 210 SERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPE 269
Query: 344 KIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV-ENIHPTDIATLLDQQ 402
+ A AK + + ++ + ++ S + + + + +
Sbjct: 270 AVWARHALTAKAMRAGVTAM-GLSVWAASDSIAS--PTTTAVRTPDGVDEKALRQAARAR 326
Query: 403 YGVAT------------RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450
YGV R GH +G A + AL
Sbjct: 327 YGVVFSSGRGETLGKLTRIGH---------MGPTA----------QPIYAIAALTALGGA 367
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 53/314 (16%), Positives = 90/314 (28%), Gaps = 65/314 (20%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHI--SNMLASILPIEEI 230
+A++ GAN+ L D + + + + K K+V + H S P++ I
Sbjct: 101 LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIH--PLKAI 158
Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFL-------- 280
A +VDA ++ V V D + + K P+G+ +
Sbjct: 159 GEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSV-PSGMAPITYNERVAD 217
Query: 281 -------FGKSDLLSAMPPFLGGGEMISDVFLDHSTFAD--PPSRFEAGTPAIGEAIGLG 331
+ A L G I+ + D S D R T A L
Sbjct: 218 VIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALR 277
Query: 332 AAIDYLSTIGMQKIHAYEMELAKYLYE-------NLLSIPNIR------IYGPK--PSEH 376
+ + G++ L L + + + P E
Sbjct: 278 EGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGIDGES 337
Query: 377 VQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNT 436
V+ L F +E IA+ G R G +G +
Sbjct: 338 VRDMLLAQFGIE------IASSFGPLAGKIWRIGT---------MGYSC----------R 372
Query: 437 KEDVDEFIHALNET 450
KE+V + L
Sbjct: 373 KENVLFVLAGLEAV 386
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 54/305 (17%), Positives = 101/305 (33%), Gaps = 65/305 (21%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHH------ISNMLASILP 226
+A + GA+++ ++ E L++L+ L + ++ + H P
Sbjct: 124 LVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQ------P 177
Query: 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKS 284
+E + + G +LVD S+ + + + D + S K C G
Sbjct: 178 LEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGC-SPGASPFT--- 233
Query: 285 DLLS--AMPPFLGGGEMISDVFLDHSTFAD--PPSRFEAGTPAIGEAIGLGAAIDYLSTI 340
+S A+ +++ +LD + R T I L A+ ++
Sbjct: 234 --MSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE 291
Query: 341 GMQKIHAYEMELAKYLYE-------NLLSIPNIR------IYGPK--PSEHVQRAALCSF 385
G+ + +YL+E +L R + P + V R L
Sbjct: 292 GLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEH 351
Query: 386 NVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445
N+E + L + G R G +G N+ KE VD+ I
Sbjct: 352 NIE------VGGGLGELAGKVWRVGL---------MGFNS----------RKESVDQLIP 386
Query: 446 ALNET 450
AL +
Sbjct: 387 ALEQV 391
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 27/178 (15%)
Query: 151 LSNLKSGDEVIL-------TVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKE 203
L+ GDE++ T+ E ++ + L + D + +
Sbjct: 101 FGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAA 160
Query: 204 MLSRKTKLVVI----HHISNMLASILPIEEIVHWSHDV--GAKVLVDACQSVPHMVVDVQ 257
+ TK++ I + + +I I+E++ + ++ V VD C ++ Q
Sbjct: 161 AIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEF---IEEQ 217
Query: 258 ---GLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMPPFL---GGGEMISDVFL 305
+ AD + S K G TG G++ GK + A L G G
Sbjct: 218 EPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPGIGAEAGASLY 274
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 4e-07
Identities = 62/390 (15%), Positives = 113/390 (28%), Gaps = 63/390 (16%)
Query: 86 ALQNYYEAYNSNVHRGIHFLSAKATDEYEL-ARKKVAAFINASDSGEI---VFTKNATEA 141
+ Y SN +H +T ++E A + +G T TE+
Sbjct: 116 LNEVYALQSQSN---PLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTES 172
Query: 142 INL-VAYSWGLSNLKSG---DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPD 197
+ L + + G E ++ V+ H + + AQ G L L+ D D
Sbjct: 173 LLLAMKTYRDWARATKGITAPEAVVPVSAHAA----FDKAAQYFGIKLVRTPLDADYRAD 228
Query: 198 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ 257
+ ++E ++ T +V + PI EI + + G VDAC
Sbjct: 229 VAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLG--------- 279
Query: 258 GLDADFLVASSHKMCGPTGIGFLFGKSDLLSA---------MPPFLGGGEMISDVFLDHS 308
+ + G F F + S L +
Sbjct: 280 -----GFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQ 334
Query: 309 TFADPP-SRFEAGTPAI------GEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361
F +P + AA+ L G ++ A L +
Sbjct: 335 YFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVR 394
Query: 362 SIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYL 421
+IP+++I G P + + + ++ + + G L+
Sbjct: 395 AIPSLKILGD-PLWVI------AVASDELNIYQVMEEM-------AGRGWR----LNGLH 436
Query: 422 GVNASARASLHFYNTKEDVDEFIHALNETV 451
A A + VD F+ L + V
Sbjct: 437 RPPAFHVALTLRHTEPGVVDRFLADLQDAV 466
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 55/304 (18%), Positives = 97/304 (31%), Gaps = 60/304 (19%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHI--SNMLASILPIEEI 230
+A + GA+++ + +S LD++++ L ++ + S + +E +
Sbjct: 109 SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQ--GLEGV 166
Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSDLLS 288
H ++VD S+ + + + D + S K P GI + S
Sbjct: 167 GALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGA-PPGITPVS-----FS 220
Query: 289 --AMPPFLGGGEMISDVFLD-----HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341
A+ + + + D R T + GL AI G
Sbjct: 221 HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEG 280
Query: 342 MQKIHAYEMELAKYLYE-------NLLSIPNIR------IYGPK--PSEHVQRAALCSFN 386
+ + A + AK LY L + P R I P+ + A+ ++
Sbjct: 281 LPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYL 340
Query: 387 VENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHA 446
VE I+ L G R G +G NA T E VD +
Sbjct: 341 VE------ISGGLGPTAGQVFRIGL---------MGQNA----------TTERVDRVLQV 375
Query: 447 LNET 450
E
Sbjct: 376 FQEA 379
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 48/312 (15%), Positives = 89/312 (28%), Gaps = 63/312 (20%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHI--SNMLASILPIEEI 230
+A++ A + + + E D++++ + R + +L++ S + P+ E+
Sbjct: 103 LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQ--PLAEL 160
Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLF------- 281
A DA S+ ++ D + A K P+G +
Sbjct: 161 GEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGG-PSGTSPITLSARMEE 219
Query: 282 ------GKSDLLSAMPPFLGGGEMISDVFLDHSTFAD--PPSRFEAGTPAIGEAIGLGAA 333
+ + G EMI + D D P R T A G
Sbjct: 220 AIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGAREC 279
Query: 334 IDYLSTIGMQKIHAYEMELAKYLYE-------NLLSIPNIR------IYGPK--PSEHVQ 378
+ G+ A L + + + P+ + +
Sbjct: 280 ARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQAR 339
Query: 379 RAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438
+ L F +E I T +G R G +G NA K+
Sbjct: 340 KLMLEDFGIE------IGTSFGPLHGKVWRIGT---------MGYNA----------RKD 374
Query: 439 DVDEFIHALNET 450
V + AL
Sbjct: 375 CVMTTLSALEAV 386
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 8e-07
Identities = 30/187 (16%), Positives = 69/187 (36%), Gaps = 33/187 (17%)
Query: 118 KKVAAFINASDSGE-----IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIV 172
+KV + G+ + F + ++ AI + LK + +
Sbjct: 61 EKVNEYGLKHLGGDENDKCVGFNRTSS-AILAT-----ILALKPKKVIHYLPELPGHPSI 114
Query: 173 PWQLVAQKTGANL---KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM-LASILPIE 228
+ K+ + + ++ + + T +++ ++ + + +
Sbjct: 115 E-------RSCKIVNAKYFESDK-----VGEILNKIDKDTLVIITGSTMDLKVIELENFK 162
Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQ----GLDADFLVASSHK-MCGPTGIGFLFGK 283
++++ + + A V VD ++ Q L AD +V S+ K M GP G G L GK
Sbjct: 163 KVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRG-GLLAGK 221
Query: 284 SDLLSAM 290
+L+ +
Sbjct: 222 KELVDKI 228
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 24/178 (13%)
Query: 151 LSNLKSGDEVILTVAEHHSAIVP--------WQLVAQKTGANLKFLNLNDDESPDLDKLK 202
NL+ G+ ++ E + + ++ G N K ++L +D P+L++++
Sbjct: 109 FGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIE 168
Query: 203 EMLSRKTKLVVIHHISNM------LASILPIEEIVHWSHDV--GAKVLVDACQSVPHMVV 254
++L + ++H + I I+ IV ++ VD C
Sbjct: 169 KVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTK 228
Query: 255 DVQGLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMPPFL---GGGEMISDVFL 305
+ + AD + S K G PTG G+L G D + L G G F
Sbjct: 229 EPTDVGADLIAGSLIKNIGGGIAPTG-GYLAGTKDCIEKTSYRLTVPGIGGECGSTFG 285
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 42/302 (13%), Positives = 100/302 (33%), Gaps = 55/302 (18%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHI--SNMLASILPIEEI 230
++++ GA+++ + D L+ L + + K + + H S+ L P+E +
Sbjct: 108 AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQ--PLEGV 165
Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLFGKSDLLS 288
H ++VDA S+ + + + D + + K P GI + +S
Sbjct: 166 GQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGA-PPGITPIS-----IS 219
Query: 289 --AMPPFLGGGEMISDVFLDHSTFADPPSRFEAG-----TPAIGEAIGLGAAIDYLSTIG 341
A+ + D + ++ T A L A+ ++ G
Sbjct: 220 PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEG 279
Query: 342 MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV-ENIHPTDIATLLD 400
++ +E A+ LYE L + + I+ P + + + + + ++
Sbjct: 280 LENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRL--PTVTGIMIPKGVDWWKVSQYAM 336
Query: 401 QQYGVAT------------RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448
+ + R G +G + T + + +++
Sbjct: 337 NNFSLEVQGGLGPTFGKAWRVGI---------MGECS----------TVQKIQFYLYGFK 377
Query: 449 ET 450
E+
Sbjct: 378 ES 379
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 47/304 (15%), Positives = 104/304 (34%), Gaps = 63/304 (20%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHI--SNMLASILPIEEI 230
W+ + ++ N+K L + + +++E + + + KLV + H+ S + P++++
Sbjct: 92 WEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVRE--PVKDV 149
Query: 231 VHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLF------G 282
++ ++VD SV V + + D + +S K G+G L
Sbjct: 150 INKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGS-AAGLGLLLLSPKALS 208
Query: 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG------TPAIGEAIGLGAAIDY 336
D +++ + +LD + E G TP + + L A
Sbjct: 209 ILDSQNSIAGY----------YLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRL 258
Query: 337 LSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTD-I 395
+ G++ +A + L ++ + I +P + + ++ P +
Sbjct: 259 IEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSN--TVTGVILKVADPQKVL 315
Query: 396 ATLLDQQYGVAT---------RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHA 446
A +++ A R GH +G + T D I
Sbjct: 316 AGTVNEGVEFAPGVHPAFKYFRIGH---------MG-----------WVTPNDAIIAISV 355
Query: 447 LNET 450
+ T
Sbjct: 356 IERT 359
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 22/173 (12%)
Query: 139 TEAINLVAYSWGLSNLKSGDEVIL-------TVAEHHSAIVPWQLVAQKTGANLKFLNLN 191
T AI+ V + L+ DE++ T+ E Q + + L
Sbjct: 87 THAISTVLFG----ILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLL 142
Query: 192 DDESPDLDKLKEMLSRKTKLVVI----HHISNMLASILPIEEIVHWSHDVGAKVL--VDA 245
++ D ++ + ++ KTK++ I + +I I+E++ + ++ +V+ VD
Sbjct: 143 ENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDN 202
Query: 246 CQSVPHMVVDVQGLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMPPFL 294
C + + AD + S K G TG G++ GK L+ L
Sbjct: 203 CYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTG-GYIAGKEALVDLCGYRL 254
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 46/380 (12%), Positives = 103/380 (27%), Gaps = 75/380 (19%)
Query: 102 IHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAINLVAYSWGLSNLKSGDEV 160
++ A+ Y L K + +F T +T + S + V
Sbjct: 121 PQPKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSA-ARKKYGSNVV 179
Query: 161 ILTVAEHHS--------AIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----- 207
I A H S + + G + ++ ++ + +
Sbjct: 180 IYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYV---------PVEDIENAIKKEIELG 230
Query: 208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC---QSVPHMVVDVQGLD--AD 262
V+ + I EI + +++ Q+ ++ + D
Sbjct: 231 NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVD 290
Query: 263 FLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGT 321
+V+SS K P G G ++ F+ + + P G
Sbjct: 291 AVVSSSDKNLLTPIGGGLVYSTDA-----------------EFIKEISLSYP------GR 327
Query: 322 PAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA 381
+ + ++ + + ++ + K L E L + K
Sbjct: 328 ASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSK------KTGGKFLDVE 381
Query: 382 LCSFNVENIH--PTDIATLLDQQ--------YGVATRSGHHCAQPLHRYLGVNASARASL 431
+ +++ P +IA L + H Y+ +NA+
Sbjct: 382 SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIG--- 438
Query: 432 HFYNTKEDVDEFIHALNETV 451
ED+ + L + +
Sbjct: 439 ---VRTEDIVNSVSKLEKIL 455
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Length = 353 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 30/200 (15%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHH------ISNMLASILP 226
+A G + + L+ E D + + L R + ++V + H + N P
Sbjct: 89 VAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLN------P 142
Query: 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFL-FGK 283
E I + + GA +DA ++ + ++ + D+ S K P G+ +
Sbjct: 143 AEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSA-PPGLAPIAASL 201
Query: 284 S--DLLSAMPPFLGGGEMISDVFLDHSTFADP-PSRFEAGTPAIGEAIGLGAAIDYLSTI 340
+ + +LD + A+ T + L A+D +
Sbjct: 202 EARKAFTGKRGW----------YLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEE 251
Query: 341 GMQKIHAYEMELAKYLYENL 360
G+ E+ ++ E L
Sbjct: 252 GVAARERRAREVYAWVLEEL 271
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Length = 390 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 27/150 (18%)
Query: 108 KATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY----SWGLSNLKSGDEVILT 163
+ +YE + A + + V + + A NL+ LK GDE+I+
Sbjct: 34 EYVKQYE---TQFAKTFGSKYA---VMVSSGSTA-NLLMIAALFFTKKPRLKKGDEIIVP 86
Query: 164 VAEHHSAIVPWQLVAQKTGANLKFL-----NLNDDESPDLDKLKEMLSRKTKLVVIHHIS 218
+ P Q+ G +KF+ LN D++ LKE ++ TK ++ ++
Sbjct: 87 AVSWSTTYYP----LQQYGLRVKFVDIDINTLN----IDIESLKEAVTDSTKAILTVNLL 138
Query: 219 NMLASILPIEEIVHWSHDVGAKVLVDACQS 248
+ I +I+ D+ +L D C+S
Sbjct: 139 GNPNNFDEINKIIG-GRDI--ILLEDNCES 165
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 17/117 (14%)
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS--RKTKLVVIHH------ISNMLASIL 225
++ V + G L ++ + L + L + V I + + N
Sbjct: 110 YKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLN------ 163
Query: 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFL 280
P+ E+ + + V VDA ++ + D + +SS K P G+
Sbjct: 164 PLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGV-PPGLAIG 219
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 385 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 44/255 (17%), Positives = 81/255 (31%), Gaps = 38/255 (14%)
Query: 174 WQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKT-KLVVIHH------ISNMLASIL 225
+ + GA + + ES L+ + E LS+ + V + H + +
Sbjct: 101 FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLS------ 154
Query: 226 PIEEIVHWSHDVGAKVL--VDACQSVPHMVVDVQGLDADFLVASSHK--MCGPTGIGFLF 281
++ I + VDA S+ + DF + +S K P G+
Sbjct: 155 DLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGA-PAGLSISL 213
Query: 282 GKSDLLS--AMPPFLGGGEM--ISDVFLDHSTFADPPSRFEAG------TPAIGEAIGLG 331
S M L + + F + +EAG TP + L
Sbjct: 214 -----CSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLD 268
Query: 332 AAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH 391
A+ + G+ K E++ + ++L++ + PS V
Sbjct: 269 VALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTA---VYVAD 325
Query: 392 PTDIATLLDQQYGVA 406
P D+ L +GV
Sbjct: 326 PPDVIAFLK-SHGVV 339
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 54/304 (17%), Positives = 96/304 (31%), Gaps = 40/304 (13%)
Query: 92 EAYNSNVHR-GIHFLSAKATDEYEL-ARKKVAAFINA-SDSGEIVFTKNATEAI---NLV 145
AY +H A + E V NA SD+G T TE++ L
Sbjct: 86 IAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLS 145
Query: 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE-SPDLDKLKEM 204
A + L + + I+ H+ + A G L+ + L+ DL K+K+
Sbjct: 146 AKMYALHHRGITEPEIIAPVTAHAG---FDKAAYYFGMKLRHVELDPTTYQVDLGKVKKF 202
Query: 205 LSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFL 264
+++ T L+V + IE + + + VD+C F+
Sbjct: 203 INKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCL-------------GSFI 249
Query: 265 VASSHKMCGPTGIGFLFGKSDLLSA---------MPPFLGGGEMISDVFLDHSTFADP-- 313
V+ K F + S P + H + +P
Sbjct: 250 VSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAW 309
Query: 314 -----PSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL-SIPNIR 367
S AG+ +G A + + G + + A + + +IP++
Sbjct: 310 TGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLD 369
Query: 368 IYGP 371
I G
Sbjct: 370 IMGN 373
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 25/178 (14%)
Query: 151 LSNLKSGDEVILTVAEHHSAI--------VPWQLVAQKTGANLKFLNLNDDESPDLDKLK 202
NL+ D ++ + + ++ G K ++L D + D++ +K
Sbjct: 110 FGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGK-VDINTVK 168
Query: 203 EMLS--RKTKLVVIHHISNM----LASILPIEEIVHWSHDVGAKVL--VDACQSVPHMVV 254
E L KL+ I + I I EI+ +V V+ VD C
Sbjct: 169 EELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEK 228
Query: 255 DVQGLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMPPFL---GGGEMISDVFL 305
+ + AD + S K G TG G++ GK + ++ + G G F
Sbjct: 229 EPTDVGADIIAGSLIKNIGGGIATTG-GYIAGKEEYVTQATFRVTVPGIGGECGSTFG 285
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTK 210
+ L +GD ++ + S V + + G F++ +D L + + LS T+
Sbjct: 114 GALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDD-----LSQWERALSVPTQ 168
Query: 211 LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
V SN + S++ I + +H GAKV++D
Sbjct: 169 AVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNV 204
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 26/242 (10%), Positives = 63/242 (26%), Gaps = 65/242 (26%)
Query: 22 SAIRRFSSALCVSSSPSVTSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPI 81
++IR + V++ T T + + P P Q
Sbjct: 26 ASIRDLVAL--VTNLEKATGTKFCRME-MGVPGLP-------------------APQ-IG 62
Query: 82 --AVLKAL-QNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIV 133
++ L + Y + G+ EL +++ + F + V
Sbjct: 63 IETEIQKLREGVASIYPNL--DGL----------PEL-KQEASRFAKLFVNIDIPARACV 109
Query: 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP-WQLVAQK-----TGANLKF 187
T + + + ++ + I P + K G +
Sbjct: 110 PTVGSMQGCFVSFLVANRTHKNREYGTLF--------IDPGF--NLNKLQCRILGQKFES 159
Query: 188 LNL--NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVL 242
+L E + + + ++ + +N + + I + V+
Sbjct: 160 FDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVI 219
Query: 243 VD 244
D
Sbjct: 220 ED 221
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 100.0 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 100.0 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 100.0 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 100.0 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 100.0 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 100.0 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 100.0 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.98 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.98 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.98 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.98 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.98 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.98 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.98 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.98 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.97 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.97 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.97 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.97 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.97 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.97 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.97 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.97 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.97 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.97 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.97 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.97 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.97 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.97 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.97 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.97 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.97 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.97 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.97 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.97 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.97 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.97 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.97 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.97 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.97 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.97 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.97 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.97 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.97 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.97 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.97 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.97 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.97 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.97 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.97 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.97 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.97 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.96 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.96 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.96 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.96 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.96 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.96 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.96 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.96 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.96 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.96 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.96 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.96 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.96 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.96 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.93 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.96 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.96 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.96 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.96 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.96 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.96 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.96 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.95 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.95 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.95 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.95 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.95 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.95 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.95 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.95 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.95 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.95 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.95 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.95 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.95 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.95 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.95 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.95 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.95 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.95 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.95 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.94 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.94 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.94 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.94 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.94 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.94 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.94 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.94 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.94 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.94 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.94 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.93 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.93 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.93 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.93 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.93 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.93 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.93 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.93 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.93 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.93 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.92 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.92 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.92 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.92 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.91 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.91 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.91 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.91 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.91 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.91 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.91 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.88 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.88 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.86 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.78 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.85 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.84 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.84 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.82 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.78 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.69 |
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-48 Score=377.15 Aligned_cols=399 Identities=46% Similarity=0.805 Sum_probs=334.4
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 128 (458)
+.+|++||..+.... +++++|||+++.++.|+.+.+++.+++.....+++.+.+..++...+..+++++.+++++|.++
T Consensus 6 ~~~r~~f~~~~~~~~-g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 84 (406)
T 1kmj_A 6 DKVRADFPVLSREVN-GLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS 84 (406)
T ss_dssp HHHHHTCGGGGCEET-TEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHhCcccccccC-CCceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 457889998743211 3468999999999999999999999998876666655555556677888999999999999832
Q ss_pred CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC
Q 012718 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK 208 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 208 (458)
.++|++|+|+|+|+.+++.++....+++||+|+++.++|++....+..+++..|++++.++.++++.+|++++++.++++
T Consensus 85 ~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~ 164 (406)
T 1kmj_A 85 AEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEK 164 (406)
T ss_dssp GGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTT
T ss_pred CCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccC
Confidence 24999999999999999998721015789999999999999988888888888999999999888889999999999999
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccc
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~ 288 (458)
+++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..++++...++|++++|+||.+|+.|+|++++++++++
T Consensus 165 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~ 244 (406)
T 1kmj_A 165 TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQ 244 (406)
T ss_dssp EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHH
T ss_pred CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeHHHHh
Confidence 99999999999999999999999999999999999999999887666555679999999999889989999999999888
Q ss_pred cCCCccccCcceEeeecC-CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Q 012718 289 AMPPFLGGGEMISDVFLD-HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR 367 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~ 367 (458)
.+.+...+|+........ ...+...+.+++.|+++..+++++.++++++.+.+++++.++.+++++++.+.|+++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 324 (406)
T 1kmj_A 245 EMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLT 324 (406)
T ss_dssp HCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred hcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 888777666543322111 1123344567788999999999998899998877899999999999999999999988999
Q ss_pred EeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 368 IYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
+..+. .++++++|.+++.+..++.+.|.++ ||.+++|..|..+....+|.++++|++++.+++++|++++++.|
T Consensus 325 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l 398 (406)
T 1kmj_A 325 LYGPQ-----NRLGVIAFNLGKHHAYDVGSFLDNY-GIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGL 398 (406)
T ss_dssp EESCT-----TCCSEEEEEETTCCHHHHHHHHHHT-TEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHH
T ss_pred EecCC-----CcCCEEEEEECCCCHHHHHHHHhhC-CcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHH
Confidence 87653 1277888888877788899999888 99999999888766555666789999999999999999999999
Q ss_pred HHHHHhh
Q 012718 448 NETVSFF 454 (458)
Q Consensus 448 ~~~~~~~ 454 (458)
+++++.+
T Consensus 399 ~~~~~~l 405 (406)
T 1kmj_A 399 QRIHRLL 405 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998764
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=373.34 Aligned_cols=410 Identities=62% Similarity=1.009 Sum_probs=337.1
Q ss_pred CCccchhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 012718 42 TDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVA 121 (458)
Q Consensus 42 ~~~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 121 (458)
...+.+++.+|++||....... +++++||+++..++.|+.+.+++.+.+.....+++.+.+.++....+..+++++.++
T Consensus 4 ~~~~~~~~~~r~~f~~~~~~~~-g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la 82 (420)
T 1t3i_A 4 LQIPSLAATVRQDFPILNQEIN-GHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVA 82 (420)
T ss_dssp ---CCHHHHHGGGCGGGSCEET-TEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhCCccccccC-CCceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHH
Confidence 4456788999999998743211 245899999999999999999999998876655554444444444677889999999
Q ss_pred HHcCC-CCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHH
Q 012718 122 AFINA-SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDK 200 (458)
Q Consensus 122 ~~~g~-~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~ 200 (458)
+++|. ++ +++++|+|+|+|+.+++.++....+++||+|+++.++|++...++..+++..|++++.++.++++.+|+++
T Consensus 83 ~~~~~~~~-~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~ 161 (420)
T 1t3i_A 83 KFINARSP-REIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEH 161 (420)
T ss_dssp HHTTCSCG-GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHH
T ss_pred HHcCCCCC-CeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHH
Confidence 99999 44 49999999999999999987210157899999999999998877888888889999999998888899999
Q ss_pred HHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEE
Q 012718 201 LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFL 280 (458)
Q Consensus 201 l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l 280 (458)
+++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..++++...++|++++|+||++|+.|+|++
T Consensus 162 l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~G~~ 241 (420)
T 1t3i_A 162 FKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFL 241 (420)
T ss_dssp HHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEE
T ss_pred HHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCceEEE
Confidence 99999999999999999999999999999999999999999999999998876666666799999999999999889999
Q ss_pred EEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 012718 281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360 (458)
Q Consensus 281 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L 360 (458)
++++++++.+.+...+|+...........|...+.+++.|+++..+.+++..+++++.+.+++++.++.+++++++.+.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 321 (420)
T 1t3i_A 242 YGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGL 321 (420)
T ss_dssp EECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888776666544332222223344456777889999999999889999887789999999999999999999
Q ss_pred hcCCCEEEeCCCCCCcC-ccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 361 LSIPNIRIYGPKPSEHV-QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 361 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
++++++++..+... . .++++++|.+++.+..++.+.|.++ ||.+++|.+|..+.+..+|.++++|++++.+++++|
T Consensus 322 ~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~ 398 (420)
T 1t3i_A 322 GQIPQLRLYGPNPK--HGDRAALASFNVAGLHASDVATMVDQD-GIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEE 398 (420)
T ss_dssp HTCTTEEEESCCGG--GSCBCSEEEEEETTBCHHHHHHHHHTT-TEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHH
T ss_pred HhCCCeEEeCCCcc--ccccCCEEEEEECCCCHHHHHHHHHHC-CeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHH
Confidence 99889998766410 0 1367888888876778899999888 999999988877655556667899999999899999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 012718 440 VDEFIHALNETVSFFNV 456 (458)
Q Consensus 440 i~~l~~~l~~~~~~~~~ 456 (458)
+++++++|+++++++++
T Consensus 399 i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 399 IDLFLQSLQATIRFFSD 415 (420)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999987754
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=347.97 Aligned_cols=372 Identities=24% Similarity=0.404 Sum_probs=307.5
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 128 (458)
+.+|++||.+ .++.+|||+++.+++|+.+.+++.+.+.....++. +.+..+.......+++++.+++++|+++
T Consensus 14 ~~~r~~fp~~------~~~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~ 86 (406)
T 3cai_A 14 ARVRGLHPSL------GDGWVHFDAPAGMLIPDSVATTVSTAFRRSGASTV-GAHPSARRSAAVLDAAREAVADLVNADP 86 (406)
T ss_dssp HHHHHTCTTT------TSSCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSC-SSSHHHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHhhhhc------CCCeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4678999998 24689999999999999999999999876544442 3344455567788899999999999975
Q ss_pred CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcC
Q 012718 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR 207 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~ 207 (458)
+ +|++|+|+|+++.+++.++.. .+++||+|+++.++|++...++..+++..|++++.++++ +++.+|+++|++.+++
T Consensus 87 ~-~v~~~~g~t~al~~~~~~l~~-~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~ 164 (406)
T 3cai_A 87 G-GVVLGADRAVLLSLLAEASSS-RAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK 164 (406)
T ss_dssp G-GEEEESCHHHHHHHHHHHTGG-GGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT
T ss_pred C-eEEEeCChHHHHHHHHHHHhh-ccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC
Confidence 5 899999999999999987621 157899999999999998888887777779999999998 6788999999999999
Q ss_pred CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCcee-EEEEeccc
Q 012718 208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIG-FLFGKSDL 286 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G-~l~~~~~~ 286 (458)
++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..++++...++|++++|+||++||. +| ++++++++
T Consensus 165 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~~~~~ 243 (406)
T 3cai_A 165 STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSV 243 (406)
T ss_dssp TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS-CEEEEESCHHH
T ss_pred CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC-cCeEEEEehHH
Confidence 99999999999999999999999999999999999999999888777666667999999999988876 88 99999988
Q ss_pred cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC--------------HHHHHHHHHHH
Q 012718 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG--------------MQKIHAYEMEL 352 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g--------------~~~~~~~~~~l 352 (458)
++.+.+....++. ..+.+++.+|++...+.++.++++++...| ++++.++.+++
T Consensus 244 ~~~l~~~~~~~~~------------~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (406)
T 3cai_A 244 MNSFGSVSTNPYA------------TGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRV 311 (406)
T ss_dssp HHTSCCCCSCTTC------------CGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCcccCCCC------------CccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHH
Confidence 7777654321110 012456678999999989989999887654 78899999999
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCC---CCeEEE
Q 012718 353 AKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV---NASARA 429 (458)
Q Consensus 353 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~---~~~lRi 429 (458)
++++.+.|++++++++..+.. .++++++|.+++.+..++.+.|.++ ||.+++|. .......+|. .+++|+
T Consensus 312 ~~~l~~~L~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~~-gi~v~~g~--~~~~~~~~g~~~~~~~iRi 384 (406)
T 3cai_A 312 FDYLMVSLRSLPLVMLIGRPE----AQIPVVSFAVHKVPADRVVQRLADN-GILAIANT--GSRVLDVLGVNDVGGAVTV 384 (406)
T ss_dssp HHHHHHHHHTCTTEEECCCCS----SBCSEEEEEETTBCHHHHHHHHHHT-TEECEECC--SCHHHHHHTTTTTTCCEEE
T ss_pred HHHHHHHHhcCCCeEEcCCcc----ccCCEEEEEECCcCHHHHHHHHHHC-CcEEecCC--hHHHHHHcCCCCCCCeEEE
Confidence 999999999988998876541 3466899999877788899999887 99998876 1222223332 478999
Q ss_pred eeCCCCCHHHHHHHHHHHHH
Q 012718 430 SLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 430 s~~~~~t~~di~~l~~~l~~ 449 (458)
+++.+++++|+++++++|++
T Consensus 385 s~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 385 GLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp ECCTTCCHHHHHHHHHHHHT
T ss_pred EeecCCCHHHHHHHHHHHHH
Confidence 99999999999999999875
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-43 Score=339.87 Aligned_cols=364 Identities=26% Similarity=0.413 Sum_probs=301.2
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
++|||+++.+++|+.+.+++.+++.....+++. .+..+....+..+++++.+++++|++++ ++++|+|+|+|+.+++.
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~~~a~~~~~~ 78 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFTSGATEANNLAII 78 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTE-EEEEESSHHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEECCchHHHHHHHH
Confidence 489999999999999999999999876666643 4555566788889999999999999765 89999999999999999
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
++.....++||+|+++.++|++....+..+ +..|++++.+++++++.+|++++++++++++++|++++++||||.+.|+
T Consensus 79 ~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~ 157 (382)
T 4hvk_A 79 GYAMRNARKGKHILVSAVEHMSVINPAKFL-QKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPV 157 (382)
T ss_dssp HHHHHHGGGCCEEEEETTCCHHHHHHHHHH-HHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCH
T ss_pred HhhhhhcCCCCEEEECCCCcHHHHHHHHHH-HhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCH
Confidence 872000179999999999999877655543 5679999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
++|.++|+++|+ +|+|++|+.+..++++...++|++++|+||++|+.|+|+++++++. .+.+...++..
T Consensus 158 ~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~-------- 226 (382)
T 4hvk_A 158 EEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQ-------- 226 (382)
T ss_dssp HHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSSCSSCT--------
T ss_pred HHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcCcccccCCC--------
Confidence 999999999999 9999999999887777666799999999999999999999999876 45544443322
Q ss_pred CCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe
Q 012718 308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV 387 (458)
Q Consensus 308 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (458)
..++..++++...+.++.++++++.+ +++++.++.+++++++.+.|++++++++..+... ....+++|.+
T Consensus 227 ------~~~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~ 296 (382)
T 4hvk_A 227 ------ENGLRSGSENVPSIVGFGKAAEITAM-EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEK---RLPNNVNVRF 296 (382)
T ss_dssp ------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSS---BCTTEEEEEE
T ss_pred ------cCccccCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccc---cCCCEEEEEE
Confidence 24566789999999999899887654 5889999999999999999999999998766521 2234889999
Q ss_pred CCCChHHHHHHHhhhcCeEeccCCCCChhh------HhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 388 ENIHPTDIATLLDQQYGVATRSGHHCAQPL------HRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 388 ~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~------~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
++.+..++.+.|.++ ||.+++|..|.... ...+|. ++++|++++.+++.+|++++++.|+++++++++
T Consensus 297 ~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 297 SYIEGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TTCCHHHHHHHHHHT-TCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHC-CEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 888889999999988 99999998776532 123443 579999999999999999999999999987754
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-44 Score=357.00 Aligned_cols=388 Identities=17% Similarity=0.188 Sum_probs=312.2
Q ss_pred hhhcCCCCccccc---------ccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhh-hHHHHHHHHHHH
Q 012718 49 HITRPDFPILHQE---------VYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS-AKATDEYELARK 118 (458)
Q Consensus 49 ~~~r~~f~~~~~~---------~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 118 (458)
..+|++|+..... .+++++.+|||+++.++.|+.+.+++.+.+..+......+ +..+ ..+....+++++
T Consensus 40 ~~~r~~f~~~~~~~~~~~~~~~~~~~~~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 118 (465)
T 3e9k_A 40 RHFRECFYIPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYG-HEVGKRPWITGDESIVG 118 (465)
T ss_dssp GGGGGGEECCBGGGSTTCCGGGSCTTCBCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGG-GTSSSSCGGGTTHHHHG
T ss_pred HHHHHhcCCCCcccccccccccccCCCCeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcc-cccCCccHHHhHHHHHH
Confidence 4578888875421 1113578999999999999999888888776543221111 1111 123445567899
Q ss_pred HHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeE-----EEEeCCCC
Q 012718 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL-----KFLNLNDD 193 (458)
Q Consensus 119 ~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~-----~~v~~~~~ 193 (458)
.+++++|++++ +|++|+|+|+++++++.++.. ..+++++|+++.++|++...++...++..|+++ ..++.+.+
T Consensus 119 ~la~~~g~~~~-~v~~t~g~t~al~~~~~~~~~-~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~ 196 (465)
T 3e9k_A 119 LMKDIVGANEK-EIALMNALTVNLHLLMLSFFK-PTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGE 196 (465)
T ss_dssp GGHHHHTCCGG-GEEECSCHHHHHHHHHHHHCC-CCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTC
T ss_pred HHHHHcCCCcC-CEEEECCHHHHHHHHHHHhcc-ccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCC
Confidence 99999999865 999999999999999998831 123456699999999999888888888889875 34466667
Q ss_pred CCCCHHHHHHhhc---CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 194 ESPDLDKLKEMLS---RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 194 ~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
+.+|+++++++++ +++++|++++++|+||.+.|+++|.++|+++|+++|+|++|+.|..++++.++++|++++|+||
T Consensus 197 ~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K 276 (465)
T 3e9k_A 197 ETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYK 276 (465)
T ss_dssp SSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSS
T ss_pred CccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECccc
Confidence 8899999999996 6789999999999999999999999999999999999999999999888888889999999999
Q ss_pred CC--CCCceeEEEEeccccccCCCccccCcceE--eee--cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 271 MC--GPTGIGFLFGKSDLLSAMPPFLGGGEMIS--DVF--LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 271 ~~--gp~g~G~l~~~~~~~~~l~~~~~g~~~~~--~~~--~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
++ ||.|+|++++++++++.+.+...||.... ..+ .....+...+.+|+.||++...++++.++++.+.+.++++
T Consensus 277 ~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~ 356 (465)
T 3e9k_A 277 YLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKA 356 (465)
T ss_dssp TTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred ccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHH
Confidence 76 67779999999999888887777765432 111 1123455667899999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHhcC----------CCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCC
Q 012718 345 IHAYEMELAKYLYENLLSI----------PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
++++..++++++.+.|+++ +++++..+... ..++++++|.++ .+..++.+.|.++ ||.++.+
T Consensus 357 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~--~~~g~~~~~~~~-~~~~~l~~~L~~~-Gi~v~~~---- 428 (465)
T 3e9k_A 357 LRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHV--EERGCQLTITFS-VPNKDVFQELEKR-GVVCDKR---- 428 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSG--GGBCSCEEEEEC-CTTCCHHHHHHTT-TEECEEE----
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCH--hhcccEEEEEec-CCHHHHHHHHHHC-CEEEecC----
Confidence 9999999999999999885 68998876522 345789999987 4567899999988 9998632
Q ss_pred hhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 415 QPLHRYLGVNASARASL-HFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.++++|+|+ +.+++.+||+++++.|++++++..
T Consensus 429 --------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~ 462 (465)
T 3e9k_A 429 --------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAE 462 (465)
T ss_dssp --------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred --------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhcc
Confidence 268999999 799999999999999999997654
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=335.41 Aligned_cols=373 Identities=24% Similarity=0.351 Sum_probs=304.2
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhc-cCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYN-SNVHRGIHFLSAKATDEYELARKKVAAFINAS 127 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~ 127 (458)
+.+|++||.. ++.+|||.++.++.|+.+.+++.+.+.... .++ ..+..........+++++.+++++|.+
T Consensus 5 ~~~r~~f~~~-------~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~~~y~~~~~~~~~l~~~la~~~g~~ 75 (390)
T 1elu_A 5 TPSLHQFPGL-------ANKTYFNFGGQGILPTVALEAITAMYGYLQENGP--FSIAANQHIQQLIAQLRQALAETFNVD 75 (390)
T ss_dssp -----CCGGG-------TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCS--SSHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCCC-------CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCC--cchhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 4568899976 678999999999999999999999887642 111 111111223567889999999999987
Q ss_pred CCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhh
Q 012718 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEML 205 (458)
Q Consensus 128 ~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l 205 (458)
++ +|++|+|+|+|+..++.++. +++||+|+++.++|++....+..+++..|++++.++.+ .++.+|++++++.+
T Consensus 76 ~~-~v~~~~g~t~a~~~~~~~~~---~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i 151 (390)
T 1elu_A 76 PN-TITITDNVTTGCDIVLWGLD---WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHL 151 (390)
T ss_dssp GG-GEEEESSHHHHHHHHHHHSC---CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTC
T ss_pred HH-HEEEeCChHHHHHHHHhCCC---CCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhc
Confidence 65 89999999999999999883 67899999999999988777777778889999999987 56788999999999
Q ss_pred cCCceEEEEecccCcCcccccHHHHHHHHH----hcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEE
Q 012718 206 SRKTKLVVIHHISNMLASILPIEEIVHWSH----DVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFL 280 (458)
Q Consensus 206 ~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~----~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l 280 (458)
++++++|++++++||||.+.|+++|.++|+ ++|+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|++
T Consensus 152 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~ 231 (390)
T 1elu_A 152 GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGL 231 (390)
T ss_dssp CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEE
T ss_pred CCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEE
Confidence 989999999999999999999999999999 99999999999999988877777789999999999 7889899999
Q ss_pred EEeccccccCCCccccCcceEeeecC-CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Q 012718 281 FGKSDLLSAMPPFLGGGEMISDVFLD-HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYE 358 (458)
Q Consensus 281 ~~~~~~~~~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~ 358 (458)
++++++++.+.+...||......+.. ...+.....++..++++...+.++.++++.+...+ ++++.++.+++++++.+
T Consensus 232 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~ 311 (390)
T 1elu_A 232 YIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWR 311 (390)
T ss_dssp EECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred EECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999998888776666554322110 01111223466778999988888989999887766 89999999999999999
Q ss_pred HHhcCCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCH
Q 012718 359 NLLSIPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437 (458)
Q Consensus 359 ~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~ 437 (458)
.|++++++++..+.+ ..+++++|.++ +.+..++.+.|.++ ||.++++. .++++||+++.++++
T Consensus 312 ~L~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~-----------~~~~iRis~~~~~~~ 375 (390)
T 1elu_A 312 GLNQLPHVHCLATSA----PQAGLVSFTVDSPLGHRAIVQKLEEQ-RIYLRTIA-----------DPDCIRACCHYITDE 375 (390)
T ss_dssp HHHHSTTEEESCSSC----CSSSEEEEEECSSSCHHHHHHHHHHT-TEECEEET-----------TTTEEEEECCTTCCH
T ss_pred HHHhcCCcEEecCcc----ccccEEEEEcCCCCCHHHHHHHHHHC-CEEEEecC-----------CCCeEEEecccCCCH
Confidence 999988999876521 23778888885 56778899999877 99998764 157999999988999
Q ss_pred HHHHHHHHHHHHH
Q 012718 438 EDVDEFIHALNET 450 (458)
Q Consensus 438 ~di~~l~~~l~~~ 450 (458)
+|+++++++|+++
T Consensus 376 ~~i~~~~~~l~~~ 388 (390)
T 1elu_A 376 EEINHLLARLADF 388 (390)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998753
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=337.34 Aligned_cols=364 Identities=26% Similarity=0.408 Sum_probs=295.2
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
++|||+++.+++|+.+.+++.+.+.....+++. .+..+....+..+++++.+++++|++++ ++++|+|+|+|+.+++.
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~~ 78 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFTSGATEANNLAII 78 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTE-EEEEESSHHHHHHHHHH
T ss_pred CeeeccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEcCchHHHHHHHHH
Confidence 479999999999999999999998765445432 3444455677889999999999999764 89999999999999999
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
++.....++||+|++++++|++....+.. ++..|++++.+++++++.+|++++++.+++++++|++++++||||.+.|+
T Consensus 79 ~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l 157 (382)
T 4eb5_A 79 GYAMRNARKGKHILVSAVEHMSVINPAKF-LQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPV 157 (382)
T ss_dssp HHHHHHGGGCCEEEEETTCCHHHHHHHHH-HTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCH
T ss_pred HHHhhccCCCCEEEECCCcchHHHHHHHH-HHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCH
Confidence 88100016899999999999977655443 33469999999998888899999999999899999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
++|.++|+++|++ |+|++|++|..++++...++|++++|+||++||.|+|+++++++. .+.+...++..
T Consensus 158 ~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~--~l~~~~~~~~~-------- 226 (382)
T 4eb5_A 158 EEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQ-------- 226 (382)
T ss_dssp HHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTC--CCCCSSCSSCT--------
T ss_pred HHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEcccc--ccCceecCCCc--------
Confidence 9999999999999 999999988776665555789999999999999899999999874 33333332211
Q ss_pred CCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe
Q 012718 308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV 387 (458)
Q Consensus 308 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (458)
..++..++++...+.++.++++.+.+ +++++.++.+++++++.+.|++++++++..+.. ...+++++|.+
T Consensus 227 ------~~~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~~~~~~~ 296 (382)
T 4eb5_A 227 ------ENGLRSGSENVPSIVGFGKAAEITAM-EWREEAERLRRLRDRIIDNVLKIEESYLNGHPE---KRLPNNVNVRF 296 (382)
T ss_dssp ------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSS---SBCTTEEEEEE
T ss_pred ------cccccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcc---cCCCCEEEEEe
Confidence 12455678898888888888988766 588999999999999999999988998876532 12355888998
Q ss_pred CCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 388 ENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 388 ~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
++.+..++.+.|.++ ||.+++|..|... ....+|. ++++|++++.+++++|+++++++|+++++++++
T Consensus 297 ~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 297 SYIEGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TTSCHHHHHHHHHHH-TCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHC-CEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 877788999999887 9999998765431 1122332 579999999889999999999999999987765
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=339.32 Aligned_cols=369 Identities=24% Similarity=0.348 Sum_probs=308.6
Q ss_pred CCCeEEecCCCCCCCcHHHHHHHHHHHH--HhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 65 SKKLVYLDNAATSQKPIAVLKALQNYYE--AYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 65 ~~~~i~l~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
+++.+|||+++.+++|+.+.+++.+.+. ....+++.+.+..+....+..+++++.+++++|++++ +|++|+|+|+|+
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~ggt~a~ 98 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFTSGATESD 98 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESSHHHHH
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-eEEEeCChHHHH
Confidence 5889999999999999999999998877 4445554435566667788889999999999999865 999999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
.+++.++.....++||+|+++.++|++....+..+ +..|++++.++.++++.+|++++++.+++++++|++++++||||
T Consensus 99 ~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 177 (423)
T 3lvm_A 99 NLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIG 177 (423)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTC
T ss_pred HHHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCc
Confidence 99998872100237999999999999876655544 66799999999998899999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEe
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISD 302 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~ 302 (458)
.+.|+++|.++|+++|+++|+|++|+.+..++++...++|++++|+||++|+.|+|+++++++..+.+.+...+++.
T Consensus 178 ~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~--- 254 (423)
T 3lvm_A 178 VVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGH--- 254 (423)
T ss_dssp BBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCT---
T ss_pred cccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCcc---
Confidence 99999999999999999999999999998888888888999999999999999999999999888888766554432
Q ss_pred eecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccE
Q 012718 303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAAL 382 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 382 (458)
...+..++++...+.++.++++.+... ++++.++.+++++++.+.|++++++++..+... ....+
T Consensus 255 -----------~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~ 319 (423)
T 3lvm_A 255 -----------ERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH---GAPNI 319 (423)
T ss_dssp -----------TTTTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT---BCTTE
T ss_pred -----------cccccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc---cCCCe
Confidence 134567889999999998999887765 789999999999999999999999998876531 22458
Q ss_pred EEEEeCCCChHHHHHHHhhhcCeEeccCCCCCh------hhHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 383 CSFNVENIHPTDIATLLDQQYGVATRSGHHCAQ------PLHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 383 v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~------~~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
++|.+++.+..++.+.|.+ |.+++|.+|.+ .....+|. .+++|++++..++++|++++++.|++++
T Consensus 320 ~~~~~~~~~~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~ 396 (423)
T 3lvm_A 320 LNVSFNYVEGESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSI 396 (423)
T ss_dssp EEEEETTSCHHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 8888888788888888875 88888887755 22223443 4799999999899999999999999999
Q ss_pred Hhhhc
Q 012718 452 SFFNV 456 (458)
Q Consensus 452 ~~~~~ 456 (458)
+++++
T Consensus 397 ~~~~~ 401 (423)
T 3lvm_A 397 GRLRD 401 (423)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 87765
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=323.24 Aligned_cols=363 Identities=26% Similarity=0.403 Sum_probs=289.5
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
+|||+++.+++|+.+.+++.+.+.....+++. .+..++...+..+++++.+++++|++++ +|++|+|+|+|+.+++.+
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~t~a~~~~~~~ 80 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFTSCATESINWILKT 80 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEESCHHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEECCHHHHHHHHHHh
Confidence 89999999999999999999998764444432 3455666788889999999999998765 999999999999999998
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
+.....++||+|+++.++|++....+.. ++..|++++.++.++++.+|++++++.+++++++|++++++||||.++|++
T Consensus 81 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~ 159 (384)
T 1eg5_A 81 VAETFEKRKRTIITTPIEHKAVLETMKY-LSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVE 159 (384)
T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHH-HHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHH
T ss_pred hhhhccCCCCEEEECCCCchHHHHHHHH-HHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHH
Confidence 8210127899999999999976554432 356699999999988888999999999998999999999999999999999
Q ss_pred HHHHHHHhcC--cEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 229 EIVHWSHDVG--AKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 229 ~i~~l~~~~~--~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
+|.++|+++| +++|+|++|+++..++++...++|++++|+||++|+.|+|++++++++ .+.+...++..
T Consensus 160 ~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~--~~~~~~~~~~~------- 230 (384)
T 1eg5_A 160 DVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQ------- 230 (384)
T ss_dssp HHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCT-------
T ss_pred HHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCC--ccccccccCcc-------
Confidence 9999999999 999999999988777777777899999999999999889999999875 23333222211
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN 386 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (458)
..++..++++...+.++..+++.+.+ .++++.++++++++++.+.|++ +++++..+... ....+++|.
T Consensus 231 -------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~---~~~~~~~~~ 298 (384)
T 1eg5_A 231 -------ERGLRSGTQNVPGIVGAARAMEIAVE-ELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEI---SLPNTLSVS 298 (384)
T ss_dssp -------TTTTBCSCCCHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTS---BCTTEEEEE
T ss_pred -------cccccCCCCChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCccc---CCCCEEEEE
Confidence 12345678888888888888887654 5889999999999999999998 58888765321 124588888
Q ss_pred eCCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 387 VENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 387 ~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+++.+..++.+.|.++ ||.+++|..|... ....+|. .+++||+++.+++++|+++++++|++++++++
T Consensus 299 ~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 377 (384)
T 1eg5_A 299 FPNIRGSTLQNLLSGY-GIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLD 377 (384)
T ss_dssp CTTCCHHHHHHHHHHT-TEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred eCCCCHHHHHHHHhhC-CeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8877788999999877 9999998766431 1112232 36899999988999999999999999998765
Q ss_pred c
Q 012718 456 V 456 (458)
Q Consensus 456 ~ 456 (458)
+
T Consensus 378 ~ 378 (384)
T 1eg5_A 378 L 378 (384)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=329.68 Aligned_cols=355 Identities=17% Similarity=0.114 Sum_probs=287.5
Q ss_pred CCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCC--cchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCChhHH
Q 012718 65 SKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG--IHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEA 141 (458)
Q Consensus 65 ~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~-t~g~t~a 141 (458)
+-++--||.++.+++|++|++++.+++.+++.++... .+..+..+.+.++++|+.+++++|++++++|+| |+|+|++
T Consensus 10 ~~~~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a 89 (377)
T 3e77_A 10 GVDLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQ 89 (377)
T ss_dssp -----CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHH
T ss_pred ccCcccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHH
Confidence 3456678999999999999999999988766654321 255677889999999999999999976558999 5899999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
+++++.++.. .++||++++...++.+. .|...+++.|..++.++.+.++..+++.++..+++++++|.+++.+|.|
T Consensus 90 ~n~a~~~l~~--~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~t 165 (377)
T 3e77_A 90 FSAVPLNLIG--LKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVH 165 (377)
T ss_dssp HHHHHHHHGG--GSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTT
T ss_pred HHHHHHhccC--CCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCch
Confidence 9999998821 13489999988888875 6788888889888888887666677888887888899999999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceE
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~ 301 (458)
|.+.|+ +|+++|+++++|++|++|..|+|+++++ ++++|.||++||.|+|++++++++++.+.+...+.
T Consensus 166 G~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~---- 234 (377)
T 3e77_A 166 GVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSV---- 234 (377)
T ss_dssp TEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGG----
T ss_pred heEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCccEEEEEcHHHHhhccCCCCch----
Confidence 999998 4889999999999999999999998876 68899999889999999999999988887543321
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA 380 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 380 (458)
.+...+. ......+||+...++++..+++++.+. |++++.++.+++++++.+.|++++++.+....+ ..++
T Consensus 235 ---~~~~~~~--~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~---~~rs 306 (377)
T 3e77_A 235 ---LEYKVQA--GNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEP---QNRS 306 (377)
T ss_dssp ---GCHHHHH--TTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCG---GGBC
T ss_pred ---hhHHHHh--hcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCH---HHcC
Confidence 0000000 112346899999999999999999998 799999999999999999999998888643222 2455
Q ss_pred c-EEEEEeCCCCh-----HHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 381 A-LCSFNVENIHP-----TDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 381 ~-~v~~~~~~~~~-----~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+ +++|++++.+. ..+.+.+.++ ||.+++|..+ .+.+|+|++.++|++|||+++++|++++++
T Consensus 307 ~~ivsf~~~~~~~~~~~~~~~l~~l~~~-Gi~~~~g~~~----------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 307 KMNIPFRIGNAKGDDALEKRFLDKALEL-NMLSLKGHRS----------VGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp SSEEEEEESSTTCCHHHHHHHHHHHHHT-TEESCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHC-CcEEeCCCCc----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5 79999997643 3566777777 9999887532 457999999999999999999999999875
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=330.91 Aligned_cols=360 Identities=22% Similarity=0.321 Sum_probs=280.1
Q ss_pred CCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 65 SKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 65 ~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.++++|||+++.+++|+.+.+++.+.+.....++.. .+..+....+..+++++.+++++|++++ +|++|+|+|+|+.+
T Consensus 18 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~g~t~al~~ 95 (400)
T 3vax_A 18 GSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPD-ELIFTSGATESNNI 95 (400)
T ss_dssp ----CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGG-GEEEESCHHHHHHH
T ss_pred cCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCC-cEEEeCCHHHHHHH
Confidence 478899999999999999999999999876656543 3444555677888999999999999865 99999999999999
Q ss_pred HHHHcCCCCC----CCCC-EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 145 VAYSWGLSNL----KSGD-EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 145 ~~~~l~~~~~----~~g~-~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
++.++ . ++|| .|+++.++|++....+..+ ...|++++.+++++++.+|++++++++++++++|++++++|
T Consensus 96 ~~~~l----~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n 170 (400)
T 3vax_A 96 ALLGL----APYGERTGRRHIITSAIEHKAVLEPLEHL-AGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNN 170 (400)
T ss_dssp HHHTT----HHHHHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCT
T ss_pred HHHHH----HHhhccCCCCEEEECccccHhHHHHHHHH-HhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCC
Confidence 99977 4 6899 9999999999877666654 45799999999998899999999999999999999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEE-Eecccc----ccCCCcc
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF-GKSDLL----SAMPPFL 294 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~-~~~~~~----~~l~~~~ 294 (458)
|||.+.|+++|.++|+++|+++|+|++|+.+..+.++... +|++++|+||++|+.|+|+++ ++++.+ ..+.+..
T Consensus 171 ptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 249 (400)
T 3vax_A 171 ETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIM 249 (400)
T ss_dssp TTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSS
T ss_pred CceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCceEEEEEecchhccccccccCcee
Confidence 9999999999999999999999999999999888777777 999999999998998999999 988322 2334433
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
.++.. ..++..++++...+.++.++++.+.+ +++++.++.+++++++.+.|+ .+++++..+...
T Consensus 250 ~~~~~--------------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~ 313 (400)
T 3vax_A 250 FGGGQ--------------ERKLRPGTLPVPLIMGLAEAAKIFEA-EHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDH 313 (400)
T ss_dssp CSSCT--------------GGGTSCSCCCHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTS
T ss_pred cCCCc--------------eeeeecCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCccc
Confidence 32221 13466788999999999899988766 689999999999999999999 889998766521
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChh------hHhhcCC-----CCeEEEee-CCCCCHHHHHH
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRYLGV-----NASARASL-HFYNTKEDVDE 442 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~------~~~~~g~-----~~~lRis~-~~~~t~~di~~ 442 (458)
..+++++|.+++.+..++.+.|. + ||.+++|..|... ....+|. ++++||++ +.+++++|+++
T Consensus 314 ---~~~~~~~~~~~~~~~~~l~~~L~-~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~ 388 (400)
T 3vax_A 314 ---VVPHILNLSFEDVDAEAFLVTLK-D-LVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEE 388 (400)
T ss_dssp ---BCTTEEEEECTTCCHHHHHHHHH-H-HHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC---------
T ss_pred ---CCCCEEEEEeCCCCHHHHHHHHh-c-CcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHH
Confidence 23458899998888899999999 7 9999998766542 2223343 38999999 98899999999
Q ss_pred HHHHHHHHHHh
Q 012718 443 FIHALNETVSF 453 (458)
Q Consensus 443 l~~~l~~~~~~ 453 (458)
++++|++++++
T Consensus 389 ~~~~l~~~~~~ 399 (400)
T 3vax_A 389 LARGVAKLKPS 399 (400)
T ss_dssp -----------
T ss_pred HHHHHHHHhcc
Confidence 99999988764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=323.38 Aligned_cols=364 Identities=17% Similarity=0.153 Sum_probs=291.0
Q ss_pred CCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 012718 54 DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV 133 (458)
Q Consensus 54 ~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~ 133 (458)
+||.+ ++.+|||+++.+++|+.+.+++.+.+.. ..++......+++++.+++++|++++ +++
T Consensus 2 ~fp~~-------~~~~yl~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~g~~~~-~v~ 63 (392)
T 2z9v_A 2 RYPEH-------ADPVITLTAGPVNAYPEVLRGLGRTVLY----------DYDPAFQLLYEKVVDKAQKAMRLSNK-PVI 63 (392)
T ss_dssp CCCTT-------SCCSEECSSSCCCCCHHHHHHTTSCCCC----------TTSHHHHHHHHHHHHHHHHHTTCSSC-CEE
T ss_pred CcccC-------CCcceeecCCCcCCCHHHHHHHhccccc----------cccHHHHHHHHHHHHHHHHHhCCCCC-EEE
Confidence 57776 6779999999999999999988765421 11234567788999999999999754 999
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhh--cCCceE
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML--SRKTKL 211 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l--~~~~~~ 211 (458)
+|+|+|+|+.+++.++ +++||+|++++++|++.. +..+++..|++++.++.++++.+|++++++.+ .+++++
T Consensus 64 ~t~g~t~a~~~~~~~~----~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 137 (392)
T 2z9v_A 64 LHGEPVLGLEAAAASL----ISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITV 137 (392)
T ss_dssp ESSCTHHHHHHHHHHH----CCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCE
T ss_pred EeCCchHHHHHHHHHh----cCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcE
Confidence 9999999999999988 689999999999999762 55666777999999999888889999999999 457899
Q ss_pred EEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccC
Q 012718 212 VVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAM 290 (458)
Q Consensus 212 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l 290 (458)
|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|++++++++++.+
T Consensus 138 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l 217 (392)
T 2z9v_A 138 VSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKM 217 (392)
T ss_dssp EEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHH
T ss_pred EEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHh
Confidence 99999999999999999999999999999999999999887777766789999999999 67788999999999877665
Q ss_pred CCccccCcceEeeecCCC-CCCC-CCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 291 PPFLGGGEMISDVFLDHS-TFAD-PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~-~~~~-~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+...|.+. .+.+.. .+.. ...++..++++...+.++.++++.+.+.|++++.++++++++++.+.|+++ ++++
T Consensus 218 ~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~ 293 (392)
T 2z9v_A 218 KANPLAPRA---SMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSV 293 (392)
T ss_dssp HTCTTSCCS---STTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred hhccCCCCc---eeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 432211000 000000 0000 013455788999999999999999888889999999999999999999887 8777
Q ss_pred eCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHA 446 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~ 446 (458)
..+... ...+.+++|.++ +.+..++.+.|.+++||.+++|..+ ..++++|+++ +++++.+|+++++++
T Consensus 294 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~--------~~~~~lRi~~~~~~~~~~~i~~~~~~ 363 (392)
T 2z9v_A 294 WAASDS--IASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGE--------TLGKLTRIGHMGPTAQPIYAIAALTA 363 (392)
T ss_dssp SSSSGG--GBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGG--------GTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred ccCCcc--ccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCC--------CCCCeEEEeCcccccCHHHHHHHHHH
Confidence 653211 123568899986 5678889999987669999887632 1267999996 447899999999999
Q ss_pred HHHHHHhhh
Q 012718 447 LNETVSFFN 455 (458)
Q Consensus 447 l~~~~~~~~ 455 (458)
|++++++++
T Consensus 364 l~~~~~~~~ 372 (392)
T 2z9v_A 364 LGGAMNAAG 372 (392)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999988654
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=330.85 Aligned_cols=346 Identities=15% Similarity=0.100 Sum_probs=266.6
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCC--cchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCChhHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG--IHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAINL 144 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~-t~g~t~a~~~ 144 (458)
.+||++++++++|++|++++.+++.++..++... .+..+..+.+.++++|+.+++++|++++++|+| |+|+|+++++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 106 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG 106 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 3899999999999999999999887766555321 334566678899999999999999975457998 6999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCC-CCHHHHHHhhcCCceEEEEecccCcC
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDES-PDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~-~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
++.++ +++||++++...++.+. +|...+++.| +++.++++ ++|. ++++++++.+++++++|++++.+|.|
T Consensus 107 ai~~l----~~~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~t 179 (386)
T 3qm2_A 107 VPLNL----LGDKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETID 179 (386)
T ss_dssp HHHHH----CTTCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTT
T ss_pred HHHhc----cCCCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCc
Confidence 99998 67899988777777765 6777888889 99999988 5664 78888888899999999999999999
Q ss_pred ccc-ccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcce
Q 012718 222 ASI-LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMI 300 (458)
Q Consensus 222 G~~-~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~ 300 (458)
|.+ .|+++|. +|+++++|++|++|..|+|+++++ ++++|.||++||.|+|++++++++++.+.+......
T Consensus 180 G~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~-- 250 (386)
T 3qm2_A 180 GIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSIL-- 250 (386)
T ss_dssp TEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGG--
T ss_pred CEecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCccEEEEECHHHHhhhcccCCcHH--
Confidence 996 8888884 799999999999999999999875 677999998899999999999999888776432110
Q ss_pred EeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCCCCCcCc
Q 012718 301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNI-RIYGPKPSEHVQ 378 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~-~~~~~~~~~~~~ 378 (458)
+...+ .......||+|+..++++..+++++.+. |++++.++.+++++++.+.|+++ ++ ....++ ..
T Consensus 251 -----~~~~~--~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~----~~ 318 (386)
T 3qm2_A 251 -----DYTVL--NDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQ----AN 318 (386)
T ss_dssp -----CHHHH--HHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCG----GG
T ss_pred -----HHHHH--hhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCH----HH
Confidence 00000 0112335799999999999999999998 79999999999999999999988 54 322221 23
Q ss_pred cc-cEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 379 RA-ALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 379 ~~-~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++ .+++|.+++ .+ .++...|.++ ||.++.|..| .+.+|+|++.++|++|||++++.|+++.++
T Consensus 319 rs~~iv~f~~~~~~~~-~~~~~~L~~~-gI~~~~g~~~----------~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 319 RSRMNVPFQLADNTLD-KVFLEESFAA-GLHALKGHRV----------VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp BCSSEEEEEESSGGGH-HHHHHHHHHT-TEECCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCcccc-HHHHHHHHHC-CCEEeCCCCC----------cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 44 489999984 33 5777788877 9999888755 356999999999999999999999998865
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=319.77 Aligned_cols=370 Identities=15% Similarity=0.192 Sum_probs=297.2
Q ss_pred ccchhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 012718 44 SVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF 123 (458)
Q Consensus 44 ~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 123 (458)
..+|+..+|++||.+ +..+|||+.+.+++++.+.+++.+.+.. .++....+..+++++.++++
T Consensus 3 ~~~~~~~~r~~f~~~-------~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~ 65 (386)
T 2dr1_A 3 IMEFEEAFKEVYEMV-------KPKYKLFTAGPVACFPEVLEIMKVQMFS----------HRSKEYRKVHMDTVERLREF 65 (386)
T ss_dssp --CCHHHHHHHHHHH-------SCCSEECCSSSCCCCHHHHHHTTSCCCC----------TTSHHHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHhhc-------CccceeecCCCcCCcHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHH
Confidence 456889999999976 4468999999999999998887665321 11223467788899999999
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHH
Q 012718 124 INASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKE 203 (458)
Q Consensus 124 ~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~ 203 (458)
+|.+..+++++|+|+|+|+..++.++ +++||+|++++++|++. .+...++..|++++.++.++++.+|++++++
T Consensus 66 ~g~~~~~~v~~~~g~t~a~~~~~~~l----~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~ 139 (386)
T 2dr1_A 66 LEVEKGEVLLVPSSGTGIMEASIRNG----VSKGGKVLVTIIGAFGK--RYKEVVESNGRKAVVLEYEPGKAVKPEDLDD 139 (386)
T ss_dssp HTCSSSEEEEESSCHHHHHHHHHHHH----SCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHH
T ss_pred hCCCCCcEEEEeCChHHHHHHHHHHh----hcCCCeEEEEcCCchhH--HHHHHHHHhCCceEEEecCCCCCCCHHHHHH
Confidence 99973337999999999999999988 67999999999999964 2566777889999999998888899999999
Q ss_pred hh--cCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCceeEE
Q 012718 204 ML--SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFL 280 (458)
Q Consensus 204 ~l--~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g~G~l 280 (458)
.+ .+++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+..++++...++|++++|+||+++ |.|+|++
T Consensus 140 ~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~ 219 (386)
T 2dr1_A 140 ALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIG 219 (386)
T ss_dssp HHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEE
T ss_pred HHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEE
Confidence 99 46889999999999999999999999999999999999999999888777777789999999999665 5579999
Q ss_pred EEeccccccCCCcc-ccCcceEeeecCCCCC-CCCC-CccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Q 012718 281 FGKSDLLSAMPPFL-GGGEMISDVFLDHSTF-ADPP-SRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYL 356 (458)
Q Consensus 281 ~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~-~~~~-~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l 356 (458)
++++++++.+.+.. .++.. +...+ .... .++..++++...+.++..+++.+... +++++.++++++++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l 293 (386)
T 2dr1_A 220 AFSERFLEIAEKMPERGWYF------DIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMV 293 (386)
T ss_dssp EECHHHHHHHTTCTTCCSTT------CHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHhcCCCCceEE------eHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99998776664321 11110 00000 0000 12445688888888999999988877 7899999999999999
Q ss_pred HHHHhcCCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 357 YENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 357 ~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
.+.|+++ ++++..+.. ...+.++++.++ +.+..++.+.|.++ ||.+++|..+ ..++++|++++.++
T Consensus 294 ~~~L~~~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~--------~~~~~iRi~~~~~~ 360 (386)
T 2dr1_A 294 REGVREI-GLDILAEPG---HESPTITAVLTPPGIKGDEVYEAMRKR-GFELAKGYGS--------VKEKTFRIGHMGYM 360 (386)
T ss_dssp HHHHHHT-TCCBSSCTT---CBCSSEEEEECCTTCCHHHHHHHHHHT-TEECEECCGG--------GTTTEEEEECCSSC
T ss_pred HHHHHHc-CCeeCcCcc---ccCCceEEEEcCCCCCHHHHHHHHHHC-CeEEecCccc--------cCCCEEEEECCCCC
Confidence 9999988 877765532 123668899987 56788999999999 9999987632 12579999999989
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 012718 436 TKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~~ 455 (458)
+++|+++++++|+++++++.
T Consensus 361 ~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 361 KFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999988753
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=321.89 Aligned_cols=376 Identities=25% Similarity=0.322 Sum_probs=285.5
Q ss_pred cCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCc
Q 012718 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGE 131 (458)
Q Consensus 52 r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~ 131 (458)
+++|+.. .+.+|||+++.+++|+.+.+++.+.+.....+++ ..+..+....+..+++++.+++++|++++ +
T Consensus 10 ~~~~~~~-------~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~ 80 (432)
T 3a9z_A 10 GSVESPP-------NRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPS-SSYVAGRKAKDIINTARASLAKMIGGKPQ-D 80 (432)
T ss_dssp ---------------CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTT-CSSHHHHHHHHHHHHHHHHHHHHHTCCGG-G
T ss_pred ccccCCC-------CCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCc-cCcHHHHHHHHHHHHHHHHHHHHcCCCcC-e
Confidence 4667775 6789999999999999999999999876555554 33444555677888999999999999755 8
Q ss_pred EEEeCChhHHHHHHHHHcCCCC----CCCCC-------------EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-C
Q 012718 132 IVFTKNATEAINLVAYSWGLSN----LKSGD-------------EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-D 193 (458)
Q Consensus 132 v~~t~g~t~a~~~~~~~l~~~~----~~~g~-------------~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~ 193 (458)
|++|+|+|+|+.+++.++.... .++|| .|+++..+|+++..++..+++..|++++.+++++ +
T Consensus 81 v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~ 160 (432)
T 3a9z_A 81 IIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVN 160 (432)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTT
T ss_pred EEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCccc
Confidence 9999999999999998872000 03675 5555555666666677777777899999999886 6
Q ss_pred CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcC----------cEEEEeccccCCcccCCCCCCCCcE
Q 012718 194 ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG----------AKVLVDACQSVPHMVVDVQGLDADF 263 (458)
Q Consensus 194 ~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~----------~~vivD~a~~~g~~~~~~~~~~~d~ 263 (458)
+.+|+++|++.+++++++|++++++||||.+.|+++|.++|+++| +++|+|++|+.|..++++...++|+
T Consensus 161 ~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~ 240 (432)
T 3a9z_A 161 GQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDF 240 (432)
T ss_dssp SSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSE
T ss_pred CCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCE
Confidence 788999999999989999999999999999999999999999999 9999999999887766665567999
Q ss_pred EEecccCCCCCCceeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 264 LVASSHKMCGPTGIGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 264 ~~~s~~K~~gp~g~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
+++|+||++||. +|+++++++. ...+.+...|++. ..+++.++++...+.++.++++++.+ ++
T Consensus 241 ~~~s~~K~~g~~-~G~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~a~~aal~~~~~-~~ 304 (432)
T 3a9z_A 241 LTIVGHKFYGPR-IGALYVRGVGKLTPLYPMLFGGGQ--------------ERNFRPGTENTPMIAGLGKAADLVSE-NC 304 (432)
T ss_dssp EEEEGGGTTCCS-CEEEEETTBTTTBCCCCSCCSSCG--------------GGGTSCSCCCHHHHHHHHHHHHHHHH-HH
T ss_pred EEEehhHhcCCc-ceEEEEccccccCCcCceeecCCc--------------cccccCCCcCHHHHHHHHHHHHHHHh-hH
Confidence 999999998877 9999999876 4556555444432 13466789999988888889998766 58
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEE--EeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChh--
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIR--IYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQP-- 416 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~-- 416 (458)
+++.++++++++++.+.|+++++++ +..+.+. ....+.+++|.+++ .+..++.+.+ . ++.++.|..|...
T Consensus 305 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l--~-~i~~~~G~~~~~~~~ 380 (432)
T 3a9z_A 305 ETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPG-VERLPNTCNFSIQGSQLRGYMVLAQC--Q-TLLASVGASCHSDHE 380 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTT-CCBCTTEEEEEECSTTCCHHHHHHHC--S-SEECBSSCGGGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCc-ccCCCCEEEEEeCCCCCcHHHHHHHh--c-CeEEeccccccCCCC
Confidence 8999999999999999998764543 3343111 01223488888875 3455666554 3 7888877766542
Q ss_pred -----hHhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 417 -----LHRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 417 -----~~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
....+|. .+++||+++.+++++|++++++.|+++++++++
T Consensus 381 ~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 381 DRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp TSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 1222343 379999999989999999999999999987653
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=316.60 Aligned_cols=374 Identities=19% Similarity=0.239 Sum_probs=290.6
Q ss_pred chhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC
Q 012718 46 SLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN 125 (458)
Q Consensus 46 ~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g 125 (458)
+.++.+|++||.. ++.+|||+++.++.|+.+.+++.+.+.....++... .....+..+..+++++.+++++|
T Consensus 14 ~~~~~~r~~f~~~-------~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g 85 (416)
T 1qz9_A 14 DSLAPLRQQFALP-------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLATLIG 85 (416)
T ss_dssp CTTGGGGGGBCCC-------TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHTTTT
T ss_pred chhHHHHHhCCCC-------CCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHHHcC
Confidence 3456788999986 678999999999999999999999887532222110 01111234667889999999999
Q ss_pred CCCCCcEEEeCChhHHHHHHHHHcCCCCC----CCCCE-EEEcCCCCccchHHHHHHHHHc--CCeEEEEeCCCCCCCCH
Q 012718 126 ASDSGEIVFTKNATEAINLVAYSWGLSNL----KSGDE-VILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDDESPDL 198 (458)
Q Consensus 126 ~~~~~~v~~t~g~t~a~~~~~~~l~~~~~----~~g~~-vl~~~~~~~s~~~~~~~~a~~~--g~~~~~v~~~~~~~~d~ 198 (458)
++++ +|++|+|+++++..++.++. .+ ++||+ |+++.+.|++...++..+++.. |++++.++. +
T Consensus 86 ~~~~-~v~~~~g~t~al~~al~~~~--~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~ 155 (416)
T 1qz9_A 86 ARDG-EVVVTDTTSINLFKVLSAAL--RVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------P 155 (416)
T ss_dssp CCTT-SEEECSCHHHHHHHHHHHHH--HHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------G
T ss_pred CCcc-cEEEeCChhHHHHHHHHhhc--ccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------H
Confidence 9765 89999999999988887761 12 68886 5666678887766666666666 999999986 6
Q ss_pred HHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC-CCCCce
Q 012718 199 DKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGI 277 (458)
Q Consensus 199 ~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-~gp~g~ 277 (458)
+++++.+++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..++++...++|++++|+||+ +++.|+
T Consensus 156 ~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~ 235 (416)
T 1qz9_A 156 EELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS 235 (416)
T ss_dssp GGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC
T ss_pred HHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCC
Confidence 7899999889999999999999999999999999999999999999999998877666556799999999995 456777
Q ss_pred -eEEEEeccccccCCCccccCcceEeee--cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 012718 278 -GFLFGKSDLLSAMPPFLGGGEMISDVF--LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAK 354 (458)
Q Consensus 278 -G~l~~~~~~~~~l~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~ 354 (458)
|++++++++++.+.+...||......+ .....+.....++..++++...++++.++++.+...+++++.++++++++
T Consensus 236 ~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 315 (416)
T 1qz9_A 236 QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTD 315 (416)
T ss_dssp CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999998888876655542211000 00111122234667889999999999999998876789999999999999
Q ss_pred HHHHHHhcC-C--CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee
Q 012718 355 YLYENLLSI-P--NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL 431 (458)
Q Consensus 355 ~l~~~L~~~-~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~ 431 (458)
++.+.|.++ + ++++..+... ...++++++.+++ ..++.+.|.++ ||.+... ..+++|+++
T Consensus 316 ~l~~~L~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~--~~~l~~~l~~~-gi~~~~~------------~~~~lRis~ 378 (416)
T 1qz9_A 316 LFIELVEQRCAAHELTLVTPREH--AKRGSHVSFEHPE--GYAVIQALIDR-GVIGDYR------------EPRIMRFGF 378 (416)
T ss_dssp HHHHHHHHHHTTSCCEECSCSSG--GGBCSEEEEECTT--HHHHHHHHHTT-TEECEEE------------TTTEEEEEC
T ss_pred HHHHHHHhhccCCCeEEeCCCCH--HHcCCEEEEecCC--HHHHHHHHHhC-CcEeccC------------CCCeEEEeC
Confidence 999999885 6 7887765321 1235688998874 67899999988 9987432 267999999
Q ss_pred C-CCCCHHHHHHHHHHHHHHHHhh
Q 012718 432 H-FYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 432 ~-~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+ ++++++|+++++++|++++++.
T Consensus 379 ~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 379 TPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHHHhcc
Confidence 8 5899999999999999998764
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=313.88 Aligned_cols=369 Identities=16% Similarity=0.157 Sum_probs=289.5
Q ss_pred cCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCc
Q 012718 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGE 131 (458)
Q Consensus 52 r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~ 131 (458)
+..||-+ .++.+|+++.+..++++.+.+++.+.+.. + ......+..+++++.+++++|.+++++
T Consensus 9 ~~~~~~~------~~~~~~~~~~g~~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~g~~~~~~ 72 (393)
T 2huf_A 9 AVLREPL------VTPNKLLMGPGPSNAPQRVLDAMSRPILG---------H-LHPETLKIMDDIKEGVRYLFQTNNIAT 72 (393)
T ss_dssp GGGGSCC------CCCCCEECSSSCCCCCHHHHHHTTSCCCC---------T-TSHHHHHHHHHHHHHHHHHHTCCCSEE
T ss_pred hhhhccc------CCCCeEEecCCCCCCCHHHHHHHHhhhcc---------C-CCHHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 4456666 35667888887788899988887664321 1 122346778899999999999975347
Q ss_pred EEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-Cce
Q 012718 132 IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTK 210 (458)
Q Consensus 132 v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~ 210 (458)
|++|+|+|+|+..++.++ +++||+|++++++|++. .+..+++..|++++.+++++++.+|++++++.+++ +++
T Consensus 73 i~~~~g~t~a~~~~~~~~----~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~ 146 (393)
T 2huf_A 73 FCLSASGHGGMEATLCNL----LEDGDVILIGHTGHWGD--RSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPS 146 (393)
T ss_dssp EEESSCHHHHHHHHHHHH----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCS
T ss_pred EEEcCcHHHHHHHHHHHH----hCCCCEEEEECCCcchH--HHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCc
Confidence 999999999999999988 67999999999999974 34556677899999999988888999999999988 899
Q ss_pred EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEecccccc
Q 012718 211 LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 211 ~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~ 289 (458)
+|++++++||||.+.|+++|.++|+++|+++|+|++|+++..++++...++|++++|+|| ++|+.|+|++++++++++.
T Consensus 147 ~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~ 226 (393)
T 2huf_A 147 VLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVER 226 (393)
T ss_dssp EEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHH
T ss_pred EEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHH
Confidence 999999999999999999999999999999999999999888777777789999999999 5778999999999877665
Q ss_pred CCCcc---ccCcceEeeecCCCCCC-CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 290 MPPFL---GGGEMISDVFLDHSTFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 290 l~~~~---~g~~~~~~~~~~~~~~~-~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+.... .++....... ...+. ....+++.++++...+.++.++++.+.+.+++++.++++++++++.+.|+++ +
T Consensus 227 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 303 (393)
T 2huf_A 227 YKRRNTKVKVYYWDMSLV--GDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-G 303 (393)
T ss_dssp HHTCSSCCSCGGGCHHHH--HHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred HhhcCCCCceEEEchHHH--HhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 44321 1100000000 00010 1124566789999999999999998877789999999999999999999988 8
Q ss_pred EEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC-CCCHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF-YNTKEDVDEF 443 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~-~~t~~di~~l 443 (458)
+++..+.. ...+.++++.++ +.+..++.+.|.+++||.+++|..| ..++++||+++. .++++|++++
T Consensus 304 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~--------~~~~~~Ri~~~~~~~~~e~i~~~ 372 (393)
T 2huf_A 304 FELYADPK---DRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGP--------TAGQVFRIGLMGQNATTERVDRV 372 (393)
T ss_dssp CCBSSCGG---GBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGG--------GTTTEEEEECCGGGCSHHHHHHH
T ss_pred CeeccCcc---ccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCccc--------ccCCEEEEEcccCcCCHHHHHHH
Confidence 77665431 112348889886 5678889999876459999987643 126799999944 3578999999
Q ss_pred HHHHHHHHHhhhc
Q 012718 444 IHALNETVSFFNV 456 (458)
Q Consensus 444 ~~~l~~~~~~~~~ 456 (458)
+++|++++++++.
T Consensus 373 ~~~l~~~~~~~~~ 385 (393)
T 2huf_A 373 LQVFQEAVAAVKP 385 (393)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999987653
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=309.79 Aligned_cols=369 Identities=17% Similarity=0.190 Sum_probs=289.1
Q ss_pred cchhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc
Q 012718 45 VSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI 124 (458)
Q Consensus 45 ~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 124 (458)
......+|+.||.+. .+.+|+++.+.+++++.+.+++.+.+.. .++....+..+++++.+++++
T Consensus 17 ~~~~~~~r~~~~~~~------~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~ 80 (393)
T 1vjo_A 17 ISINDNQRLQLEPLE------VPSRLLLGPGPSNAHPSVLQAMNVSPVG----------HLDPAFLALMDEIQSLLRYVW 80 (393)
T ss_dssp CCCCCTTCCCCCSCC------CCCCEECSSSCCCCCHHHHHHHSSCCCC----------TTSHHHHHHHHHHHHHHHHHH
T ss_pred eeecchhhhcCCccC------CccceeccCCCCCCCHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHHh
Confidence 334466788999762 4468999999999999999888765321 112235677888999999999
Q ss_pred CCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHh
Q 012718 125 NASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM 204 (458)
Q Consensus 125 g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~ 204 (458)
|.++++++++|+|+|+|+..++.++ +++||+|++++++|++. .+...++..|++++.++.++++.+|++++++.
T Consensus 81 g~~~~~~v~~t~g~t~al~~~~~~~----~~~gd~Vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~ 154 (393)
T 1vjo_A 81 QTENPLTIAVSGTGTAAMEATIANA----VEPGDVVLIGVAGYFGN--RLVDMAGRYGADVRTISKPWGEVFSLEELRTA 154 (393)
T ss_dssp TCCCSCEEEESSCHHHHHHHHHHHH----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHH
T ss_pred CCCCCcEEEEeCchHHHHHHHHHhc----cCCCCEEEEEcCChhHH--HHHHHHHHcCCceEEEecCCCCCCCHHHHHHH
Confidence 9964227999999999999999998 68999999999999963 35677788899999999988888999999999
Q ss_pred hcC-CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCC-CCCceeEEEE
Q 012718 205 LSR-KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFG 282 (458)
Q Consensus 205 l~~-~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~ 282 (458)
+++ ++++|++++++||||.+.|+++|.++|+++|+++|+|++|++|..++++...++|++++|+||++ +|.|+|++++
T Consensus 155 l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~ 234 (393)
T 1vjo_A 155 LETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTM 234 (393)
T ss_dssp HHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEE
T ss_pred HhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEE
Confidence 988 89999999999999999999999999999999999999999988888887888999999999954 5667999999
Q ss_pred eccccccCCCc---cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 283 KSDLLSAMPPF---LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 283 ~~~~~~~l~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++++++.+... ..++....... ..| ....++..|+++...+.++..+++.+.+.+++++.++++++++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (393)
T 1vjo_A 235 SSRAIEKLQRRRTKVANWYLDMNLL---GKY-WGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWER 310 (393)
T ss_dssp CHHHHHHHHTCSSCCSCSTTCHHHH---HHH-HSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhccCCCCCceecCcHhh---hhh-hccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 99876654211 11110000000 000 001234445889999999999999887768899999999999999999
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCH
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTK 437 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~ 437 (458)
|+++ ++++..+.. .....++++.++ +.+..++.+.|.+++||.+++|..+ ..++++||++ +..+++
T Consensus 311 L~~~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--------~~~~~iRis~~~~~~~~ 378 (393)
T 1vjo_A 311 LEDI-GLSLHVEKE---YRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGE--------LAGKVWRVGLMGFNSRK 378 (393)
T ss_dssp HHHT-TCCBSSCGG---GBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGG--------GTTTEEEEECCGGGCSH
T ss_pred HHHc-CCcccCCcc---ccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccc--------cCCCEEEEeCCccCChH
Confidence 9988 877765431 012457888886 5677889999987669999988743 1267999995 444577
Q ss_pred HHHHHHHHHHHHHH
Q 012718 438 EDVDEFIHALNETV 451 (458)
Q Consensus 438 ~di~~l~~~l~~~~ 451 (458)
+++++++++|++++
T Consensus 379 ~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 379 ESVDQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 78999999999876
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=308.82 Aligned_cols=345 Identities=17% Similarity=0.147 Sum_probs=271.2
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCc---chhhhHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCChhHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGI---HFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAIN 143 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~-t~g~t~a~~ 143 (458)
.+|+-+++++++|++|++++.+++..++.++. +. .+.+..+.+.++++|+.+++++|++++++|+| |+|+|++++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~-s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n 83 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQGRGY-SIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFA 83 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSS-CGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhcccCCc-eeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHH
Confidence 35666778889999999999999876665543 32 23456788999999999999999975558988 999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCC--CCHHHHHHhhcCCceEEEEecccCcC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDES--PDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~--~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
+++.++ + +||++.+...++.+. .|...+++.|++++.++.++++. ++++. + |++++++|.+++.+|.|
T Consensus 84 ~~~~~~----~-~~~~~~~i~~~~~~~--~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~t 153 (361)
T 3m5u_A 84 MIPMNL----A-LNGVCEYANTGVWTK--KAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTIY 153 (361)
T ss_dssp HHHHHH----C-CSSCEEEEECSHHHH--HHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETTT
T ss_pred HHHHhc----C-CCCeEEEEeCCHHHH--HHHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCCc
Confidence 999998 4 677653333334444 56777888899999999988774 56666 4 88899999999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceE
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~ 301 (458)
|.+.|. +++ +|+++++|++|++|..|+|+++ .|++++|.||++||.|+|++++++++++.+.+...+.
T Consensus 154 G~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~---- 221 (361)
T 3m5u_A 154 GTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS---- 221 (361)
T ss_dssp TEECSS-----CCC-CSSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCG----
T ss_pred ceeCCc-----ccc-cCCEEEEEcccccCCCCCCccc--CCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCc----
Confidence 999772 444 4999999999999999999985 7999999999889999999999998876665411100
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCCCCCcCcc
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNI-RIYGPKPSEHVQR 379 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~-~~~~~~~~~~~~~ 379 (458)
+.+...+. ......+|++...++++.++++++.+. |++++.++.+++++++.+.|++++++ ++..++. .+.
T Consensus 222 --~~~~~~~~--~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~---~rs 294 (361)
T 3m5u_A 222 --MLNYLTHA--ENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKK---DRS 294 (361)
T ss_dssp --GGCHHHHH--HTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGG---GBC
T ss_pred --eeehHHHh--hcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHH---HcC
Confidence 00000000 012334899999999999999999999 89999999999999999999999765 6654321 122
Q ss_pred ccEEEEEeCC-CC-hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 380 AALCSFNVEN-IH-PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 380 ~~~v~~~~~~-~~-~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
..+++|.+++ .. ..++...|.++ ||.++.|..+ .+.+|+|++.++|.+|||+++++|+++.++
T Consensus 295 ~~ivsf~~~~~~~~~~~~~~~L~~~-gI~~~~g~~~----------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 295 LMNVSFNIAKNKDLEPLFVKEAEEA-GMIGLKGHRI----------LGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp SSEEEEEESSCTTHHHHHHHHHHHT-TEECCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCchhhhHHHHHHHHHC-CCEEecCCCc----------cCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 3589999986 22 24688888877 9999887643 356999999999999999999999999875
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=309.47 Aligned_cols=349 Identities=17% Similarity=0.215 Sum_probs=280.8
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC-CcEEEeCChhHHHHHHHHHcC
Q 012718 72 DNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVAYSWG 150 (458)
Q Consensus 72 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~a~~~~~~~l~ 150 (458)
-+.++.++++.+.+++.+.+. ...+....+..+++++.+++++|++.+ +++++|+|+|+|+. ++.++
T Consensus 6 ~~~gp~~~~~~v~~a~~~~~~----------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~- 73 (384)
T 3zrp_A 6 LHVGPTTIKEDVLVAGLENNV----------GFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL- 73 (384)
T ss_dssp CCSSCSCCCHHHHHHTTCCSC----------CTTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG-
T ss_pred ccCCCCCCCHHHHHHhhcccc----------ccccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh-
Confidence 344556778888888765432 112334567888999999999999862 38999999999999 88777
Q ss_pred CCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHHH
Q 012718 151 LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 151 ~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
+++||+|++++++|++. .+..+++..|++++.+++++++.+|++++++.+++ ++++|++++++||||.+.|+++
T Consensus 74 ---~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 148 (384)
T 3zrp_A 74 ---LKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKD 148 (384)
T ss_dssp ---CCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHH
T ss_pred ---cCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHH
Confidence 78999999999999864 46677778899999999998888999999999988 8999999999999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccC-CCccccCcceEeeecCC
Q 012718 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAM-PPFLGGGEMISDVFLDH 307 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l-~~~~~g~~~~~~~~~~~ 307 (458)
|.++|+++|+++|+|++|+.+..+.++...++|++++|+||+ .|+.|+|+++++++.++.+ .+..... .+.+.
T Consensus 149 i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~-----~~~~~ 223 (384)
T 3zrp_A 149 VINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAG-----YYLDL 223 (384)
T ss_dssp HHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCC-----STTCH
T ss_pred HHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCc-----ccccH
Confidence 999999999999999999999988888888899999999995 5688899999999887665 2211000 00000
Q ss_pred CCCCCCC------CccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc
Q 012718 308 STFADPP------SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA 381 (458)
Q Consensus 308 ~~~~~~~------~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 381 (458)
..+.... ..+..|+++...+.++.++++.+...+++++.++++++++++.+.|+++ ++++..+... ...+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~~~ 300 (384)
T 3zrp_A 224 RNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPE--SYSNT 300 (384)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGG--GBCSS
T ss_pred HHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCccc--ccCcc
Confidence 0000000 1122368999999999999999988889999999999999999999998 8877655411 12355
Q ss_pred EEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 382 LCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 382 ~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+++|.+++.+..++.+.|.++ ||.+++|.++. .+++|++++.+++++|+++++++|++++++++
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~---------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 301 VTGVILKVADPQKVLAGTVNE-GVEFAPGVHPA---------FKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp EEEEECSSSCHHHHHHHHHTT-TCCCEECCCTT---------CCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC-CEEEecCCCCC---------cCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 888999887888999999998 99999886432 17899999988999999999999999998764
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=309.86 Aligned_cols=361 Identities=14% Similarity=0.147 Sum_probs=287.2
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
...++...++.++++.+.+++.+.. .........+..+++++.+++++|.+..+.+++++|+++|++.++
T Consensus 12 ~~~~~~~pgp~~~~~~v~~a~~~~~----------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~ 81 (411)
T 3nnk_A 12 PSRLLMGPGPINADPRVLRAMSSQL----------IGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAIL 81 (411)
T ss_dssp CCCEEESSSCCCCCHHHHHHHTSCC----------CCTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHH
T ss_pred ccceeecCCCCCCCHHHHHHhhccc----------cccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHH
Confidence 3456777777788888888876432 111223455778899999999999987634889999999999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASIL 225 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~ 225 (458)
.++ +++||+|++++++|++.. +...++..|++++.++.+.++.+|++++++.+++ ++++|++++++||||.+.
T Consensus 82 ~~~----~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~ 155 (411)
T 3nnk_A 82 VSA----IRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQ 155 (411)
T ss_dssp HHH----CCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC
T ss_pred HHh----cCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceec
Confidence 998 789999999999998652 5667788899999999988898999999999987 899999999999999999
Q ss_pred cHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCcc------ccCc
Q 012718 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFL------GGGE 298 (458)
Q Consensus 226 ~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~------~g~~ 298 (458)
|+++|.++|+++|+++|+|++|+.+..+++....++|++++|+|| ++|+.|+|++++++++++.+.+.. .|++
T Consensus 156 ~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 235 (411)
T 3nnk_A 156 PLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDA 235 (411)
T ss_dssp CCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTT
T ss_pred cHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccc
Confidence 999999999999999999999999998888888899999999999 588999999999998765543221 1111
Q ss_pred ceEeeecCC-CCCCC--------CCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 299 MISDVFLDH-STFAD--------PPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 299 ~~~~~~~~~-~~~~~--------~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
......... ..+.. ...++..++++...+.++.++++.+...|++++.++++++++++.+.|+++ ++++.
T Consensus 236 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 314 (411)
T 3nnk_A 236 HRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLETF 314 (411)
T ss_dssp CCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBC
T ss_pred cccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeC
Confidence 100000000 00000 134567889999999999999999988889999999999999999999987 87776
Q ss_pred CCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHAL 447 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~l 447 (458)
.+.. ...+.+++|.++ +.+..++.+.|.+++||.+++|... ..++++|+++ +..++++|+++++++|
T Consensus 315 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~--------~~~~~iRi~~~~~~~~~~~i~~~~~~l 383 (411)
T 3nnk_A 315 GDLK---HKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGP--------LHGKVWRIGTMGYNARKDCVMTTLSAL 383 (411)
T ss_dssp SCGG---GBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGG--------GTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred CCcc---cccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCC--------CCCCEEEEeCccCcCCHHHHHHHHHHH
Confidence 5432 123568899986 6678899999877669999877311 1257999998 6666899999999999
Q ss_pred HHHHHhhh
Q 012718 448 NETVSFFN 455 (458)
Q Consensus 448 ~~~~~~~~ 455 (458)
+++++++.
T Consensus 384 ~~~l~~~~ 391 (411)
T 3nnk_A 384 EAVLNYLK 391 (411)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99998653
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=305.13 Aligned_cols=341 Identities=16% Similarity=0.156 Sum_probs=278.0
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
|+.++++.++++.+.+++.+.+.. ..++...+..+++++.+++++|++++ ++++|+|+|+|+.+++.++
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~g~~~~-~i~~~~g~t~a~~~~~~~~ 71 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH----------HRTEAAREVFLKARGLLREAFRTEGE-VLILTGSGTLAMEALVKNL 71 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCSSE-EEEEESCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCC----------ccCHHHHHHHHHHHHHHHHHhCCCCc-eEEEcCchHHHHHHHHHhc
Confidence 677888888999999988765421 12334566788999999999999854 8999999999999999998
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
+++||+|++++++|++.. +..+++..|++++.+++++++.+|++++++ +++++|++++++||||.+.|+++
T Consensus 72 ----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~ 142 (352)
T 1iug_A 72 ----FAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPA 142 (352)
T ss_dssp ----CCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHH
T ss_pred ----cCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHH
Confidence 679999999999999764 455667789999999998888889988876 67899999999999999999999
Q ss_pred HHHHHHhc--CcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 230 IVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 230 i~~l~~~~--~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
|.++|+++ |+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|+++++++.++.+.+ .++.. +
T Consensus 143 i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~--~~~~~------~ 214 (352)
T 1iug_A 143 LARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP--RGYYL------D 214 (352)
T ss_dssp HHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC--CSSTT------C
T ss_pred HHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhC--CCcee------e
Confidence 99999999 999999999998887777766679999999999 7888899999999987766654 11110 0
Q ss_pred CCCC-CCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEE
Q 012718 307 HSTF-ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSF 385 (458)
Q Consensus 307 ~~~~-~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (458)
...+ .....++..++++...+.++.++++.+... ++++.++++++++++.+.|+++ ++++..+. ..+.+++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-----~~~~~~~~ 287 (352)
T 1iug_A 215 LARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKR-----FSPAVAAF 287 (352)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSS-----BCTTCEEE
T ss_pred HHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcccccc-----cCCeEEEE
Confidence 0000 000123446788998888888999887765 8899999999999999999988 88876542 13668999
Q ss_pred EeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 386 NVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 386 ~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.++ +.+..++.+.|.++ ||.+++|..+ ..++++|++++.+++++|+++++++|+++++++
T Consensus 288 ~~~~~~~~~~~~~~l~~~-gi~v~~~~~~--------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 288 YLPEGVPYARVKEAFAQR-GAVIAGGQGP--------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp ECCTTCCHHHHHHHHHTT-TEECEECCGG--------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHC-CEEEEeCCCc--------cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 987 56788999999988 9999987621 125799999999889999999999999998865
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=310.84 Aligned_cols=353 Identities=15% Similarity=0.182 Sum_probs=279.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEE-EeCChhHHHHHHHHHcCCC
Q 012718 74 AATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV-FTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~-~t~g~t~a~~~~~~~l~~~ 152 (458)
.++..+++.+.+++.+. ..........+..+++++.+++++|.+++ .++ +++|+|+|+..++.++
T Consensus 17 p~p~~~~~~v~~a~~~~----------~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~~~~~~~s~t~al~~~~~~l--- 82 (416)
T 3isl_A 17 PGPVEVDPRVLRVMSTP----------VVGQFDPAFTGIMNETMEMLRELFQTKNR-WAYPIDGTSRAGIEAVLASV--- 82 (416)
T ss_dssp SSSCCCCHHHHHHTTSC----------CCCTTSHHHHHHHHHHHHHHHHHTTCCCS-EEEEEESCHHHHHHHHHHHH---
T ss_pred CCCcCcCHHHHHHhccc----------CCCCccHHHHHHHHHHHHHHHHHhCCCCC-cEEEecCcHHHHHHHHHHHh---
Confidence 34445677777666441 11122234567788999999999999865 554 8999999999999988
Q ss_pred CCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc-CCceEEEEecccCcCcccccHHHHH
Q 012718 153 NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
+++||+|++++++|++.. +...++..|++++.+++++++.+|+++++++++ .++++|++++++||||.+.|+++|.
T Consensus 83 -~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~ 159 (416)
T 3isl_A 83 -IEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIG 159 (416)
T ss_dssp -CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHH
T ss_pred -cCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHH
Confidence 789999999999999642 566778889999999999889999999999998 5899999999999999999999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCcc---ccCcce-------
Q 012718 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFL---GGGEMI------- 300 (458)
Q Consensus 232 ~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~---~g~~~~------- 300 (458)
++|+++|+++|+|++|+.+..++++...++|++++|+|| ++|+.|+|++++++++++.+.+.. .||...
T Consensus 160 ~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~ 239 (416)
T 3isl_A 160 EACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALS 239 (416)
T ss_dssp HHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC-----------------
T ss_pred HHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhcc
Confidence 999999999999999999998888888899999999999 588999999999998876665432 233221
Q ss_pred -----EeeecCCCCCC--CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 301 -----SDVFLDHSTFA--DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 301 -----~~~~~~~~~~~--~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
...+.+...+. ....++..++++...+.++.++++.+...|++++.++++++++++.+.|++. ++++..+..
T Consensus 240 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 318 (416)
T 3isl_A 240 GNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDS 318 (416)
T ss_dssp -CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGG
T ss_pred CCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCcc
Confidence 11110000000 0235667889999999999999999988889999999999999999999986 887765542
Q ss_pred CCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH-HHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED-VDEFIHALNETV 451 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d-i~~l~~~l~~~~ 451 (458)
...+.+++|.++ +.+..++.+.|.+++||.+++|... ..++++|++++.+++.+| +++++++|++++
T Consensus 319 ---~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~--------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 319 ---CKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGP--------LAGKIWRIGTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp ---GBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCST--------TTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred ---ccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCC--------CCCCEEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 123468899986 6778899999987669999987521 126799999977677777 999999999999
Q ss_pred Hhhh
Q 012718 452 SFFN 455 (458)
Q Consensus 452 ~~~~ 455 (458)
+++.
T Consensus 388 ~~~~ 391 (416)
T 3isl_A 388 LRHN 391 (416)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 8653
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=303.22 Aligned_cols=353 Identities=16% Similarity=0.169 Sum_probs=278.2
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
++.+.++.++|+.+.+++.+.+.... .+....+....+..+++++.+++++|.+..+++++|+|+|+|+.+++.++
T Consensus 6 ~~~~p~p~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l 81 (362)
T 3ffr_A 6 IYFTPGPSELYPTVRQHMITALDEKI----GVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNC 81 (362)
T ss_dssp EEECSSSCCCCTTHHHHHHHHHHTTT----TTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHH
T ss_pred eeccCCCcCCCHHHHHHHHHHhcCCc----cCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhc
Confidence 44455566788888888888765421 11122344566888899999999999975458999999999999999998
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
.++ .+++..+.|++. .+...++..|++++.++.+.++.+|+++++ +++++++|++++++||||.+.|+++
T Consensus 82 ----~~~--~~i~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~ 151 (362)
T 3ffr_A 82 ----VEK--KSFHCVNGSFSK--RFYEFAGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVED 151 (362)
T ss_dssp ----CSS--EEEEEECSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHH
T ss_pred ----cCC--cEEEEcCcHHHH--HHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHH
Confidence 445 566666555552 455667788999999999888889999998 7789999999999999999999999
Q ss_pred HHHHHHhc-CcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 230 IVHWSHDV-GAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 230 i~~l~~~~-~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
|.++|+++ |+++|+|++|+.+..+.++.+ .|++++|+||+++ +.|+|++++++++++.+.+...|++... .+.+.
T Consensus 152 i~~la~~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~-~~~~~ 228 (362)
T 3ffr_A 152 INTFRDKNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIG-TYHTI 228 (362)
T ss_dssp HTTSGGGSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCC-STTSH
T ss_pred HHHHHHhCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCc-ccccH
Confidence 99999999 999999999999988777655 8999999999777 8999999999988777765554433211 11110
Q ss_pred CCCC-CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE
Q 012718 308 STFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN 386 (458)
Q Consensus 308 ~~~~-~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (458)
..+. ........++++...+.++..+++++...|++++.++.+++++++.+.|+++|++++..+.+. .....+++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--~~~~~~~~~~ 306 (362)
T 3ffr_A 229 PSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAK--LRSMTTIVAN 306 (362)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGG--GBCSSEEEEE
T ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChh--hcCCceEEEe
Confidence 0000 001123368899999999999999888878999999999999999999999999998764321 2235688999
Q ss_pred eCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 387 VENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 387 ~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+++ +..++.+.|.++ ||.+++|..+ ..++++|+|++.+++++|+++++++|++++
T Consensus 307 ~~~-~~~~~~~~l~~~-gi~~~~g~~~--------~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 307 TTM-LPGEINKILEPF-DMAVGAGYGS--------KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp ESS-CHHHHHHHHGGG-TEEEEECSGG--------GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCC-CHHHHHHHHHHC-CeEEecCccc--------cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 988 788999999999 9999987533 126799999999999999999999998764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=304.53 Aligned_cols=366 Identities=14% Similarity=0.169 Sum_probs=283.8
Q ss_pred cCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCc
Q 012718 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGE 131 (458)
Q Consensus 52 r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~ 131 (458)
++.||-+ .++.+++.+.+..++++.+.+++.+.+.. . .........+++++.+++++|.+++++
T Consensus 8 ~~~~~~~------~~~~~~~~~~~p~~~~~~v~~a~~~~~~~-------~---~~~~~~~~~~~l~~~la~~~~~~~~~~ 71 (396)
T 2ch1_A 8 ASLRNPL------IIPEKIMMGPGPSNCSKRVLTAMTNTVLS-------N---FHAELFRTMDEVKDGLRYIFQTENRAT 71 (396)
T ss_dssp GGGSSCC------CCCCCBCCSSSSCCCCHHHHHHTTSCCCC-------T---TCHHHHHHHHHHHHHHHHHHTCCCSCE
T ss_pred cccCCCC------CCCcceeecCCCCCCCHHHHHHhcccccc-------C---CChhHHHHHHHHHHHHHHHhCCCCCcE
Confidence 3346665 24556677777778888888887654210 1 122234567889999999999975437
Q ss_pred EEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-Cce
Q 012718 132 IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTK 210 (458)
Q Consensus 132 v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~ 210 (458)
|++|+|+|+++..++.++ +++||+|++++++|++. .+...++..|++++.++.++++.+|++++++.+++ +++
T Consensus 72 v~~~~g~t~al~~~~~~~----~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 145 (396)
T 2ch1_A 72 MCVSGSAHAGMEAMLSNL----LEEGDRVLIAVNGIWAE--RAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPK 145 (396)
T ss_dssp EEESSCHHHHHHHHHHHH----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCS
T ss_pred EEECCcHHHHHHHHHHHh----cCCCCeEEEEcCCcccH--HHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCC
Confidence 999999999999999998 68999999999999974 33456778899999999988888999999999987 899
Q ss_pred EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEecccccc
Q 012718 211 LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 211 ~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~ 289 (458)
+|++++++||||.++|+++|.++|+++|+++|+|++|++|..++++..+++|++++|+|| ++++.|+|+++++++.++.
T Consensus 146 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~ 225 (396)
T 2ch1_A 146 CLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDV 225 (396)
T ss_dssp EEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHH
T ss_pred EEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHh
Confidence 999999999999999999999999999999999999999988888888889999999999 5668889999999877655
Q ss_pred CCCc-------cccCcceEeeecCCCCCC-CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Q 012718 290 MPPF-------LGGGEMISDVFLDHSTFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 290 l~~~-------~~g~~~~~~~~~~~~~~~-~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
+... ..+...... .+. ....++..++++...+.++.++++.+.+.+++++.++++++++++.+.|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (396)
T 2ch1_A 226 IRNRRTKSKVFYWDLLLLGN------YWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLG 299 (396)
T ss_dssp HHTCSSCCSCGGGCHHHHHH------HTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCcccceEechHHHHH------hhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4321 111000000 010 01234567889998888888999987766899999999999999999999
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHH
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKED 439 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~d 439 (458)
++ ++++..+... ...+.+++|.++ +.+..++.+.|.+++||.+++|..+ ..++++||++ +...+++|
T Consensus 300 ~~-g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~--------~~~~~iRi~~~~~~~~~e~ 368 (396)
T 2ch1_A 300 KM-GLDIFVKDPR--HRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGP--------TFGKAWRVGIMGECSTVQK 368 (396)
T ss_dssp HH-TCCBSSCSGG--GBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGG--------GTTTEEEEECCGGGCSHHH
T ss_pred HC-CCeeccCCcc--ccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccc--------cCCCEEEEECCCCcCCHHH
Confidence 88 8777654320 012348889886 6678899999876559999887532 1267999999 45568999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 012718 440 VDEFIHALNETVSFFNV 456 (458)
Q Consensus 440 i~~l~~~l~~~~~~~~~ 456 (458)
+++++++|++++++++.
T Consensus 369 i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 369 IQFYLYGFKESLKATHP 385 (396)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999987643
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=303.96 Aligned_cols=359 Identities=16% Similarity=0.203 Sum_probs=284.8
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
.++.+.++.++++.+.+++.+... . .......+..+++++.+++++|.+..++|++|+|+++|+..++.+
T Consensus 24 ~~~~~p~p~~~~~~v~~a~~~~~~--------~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~ 93 (393)
T 3kgw_A 24 RLLLGPGPSNLAPRVLAAGSLRMI--------G--HMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFN 93 (393)
T ss_dssp CEECSSSCCCCCHHHHHHTTCCCC--------C--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHH
T ss_pred ceeccCCCCCCCHHHHHHhccccc--------C--cccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHh
Confidence 356666777888888888765311 1 112234567788999999999998654699999999999999998
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l 227 (458)
+ +++||+|+++.++|++. .+...++..|++++.++.++++.+|++++++.+++ ++++|++++++||||.+.|+
T Consensus 94 ~----~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 167 (393)
T 3kgw_A 94 L----LEPGDSFLTGTNGIWGM--RAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPL 167 (393)
T ss_dssp H----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred c----CCCCCEEEEEeCCchhH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccH
Confidence 8 78999999999888754 34666778899999999988888999999999988 89999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
++|.++|+++|+++|+|++|+.|..++++...++|+++.|+|| ++|+.|+|++++++++++.+.....++... +.+
T Consensus 168 ~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~---~~~ 244 (393)
T 3kgw_A 168 DGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSF---YTD 244 (393)
T ss_dssp TTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCS---TTC
T ss_pred HHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCce---eec
Confidence 9999999999999999999998888888888889999999999 567888999999998876665433222110 000
Q ss_pred C----CCCC-CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc
Q 012718 307 H----STFA-DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA 381 (458)
Q Consensus 307 ~----~~~~-~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 381 (458)
. ..+. ....++..++++...+.++.++++.+.+.+++++.++++++++++.+.|+++ ++++..+... ...+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~~~ 321 (393)
T 3kgw_A 245 ITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPE--IRLPT 321 (393)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGG--GBCSS
T ss_pred HHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChh--hcCCe
Confidence 0 0000 1123566789999999999999999888889999999999999999999998 8777643321 12234
Q ss_pred EEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 382 LCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 382 ~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
+++|.++ +.+..++.+.|.+++||.+++|..+ ..++++|+++ +...+++|+++++++|+++++++++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--------~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 322 ITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGP--------TEERVLRIGLLGYNATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp EEEEECCTTBCHHHHHHHHHHHHCEECBCCCGG--------GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCCEEEeCCccc--------CCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 6778886 5678899999987669999987632 1267999998 55459999999999999999887653
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=300.45 Aligned_cols=345 Identities=16% Similarity=0.176 Sum_probs=274.0
Q ss_pred ecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCChhHHHHHHHHHc
Q 012718 71 LDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 71 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~a~~~~~~~l 149 (458)
+.+.++.++|+.+.+++.+.+.. ..++...+..+++++.+++++|.+ +.+++++|+|+|+|+.+++.++
T Consensus 3 ~~~~gp~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~ 72 (353)
T 2yrr_A 3 LLTPGPTPIPERVQKALLRPMRG----------HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANL 72 (353)
T ss_dssp ECSSSSCCCCHHHHGGGGSCCCC----------TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTC
T ss_pred cCCCCCCCCCHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHh
Confidence 34455667888888888765421 122345677889999999999986 2348999999999999999877
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~ 228 (458)
.+ |+|++++++|++. .+...++..|++++.++.++++.+|++++++.+++ ++++|++++++||||.+.|++
T Consensus 73 ----~~--d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~ 144 (353)
T 2yrr_A 73 ----DR--GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAE 144 (353)
T ss_dssp ----SC--CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHH
T ss_pred ----cC--CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHH
Confidence 33 7899999999976 45667788899999999988888999999999988 899999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
+|.++|+++|+++|+|++|+++..+.++...++|++++|+|| ++|+.|+|+++++++.++.+.. ..++........
T Consensus 145 ~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~~~~~~~~~~~-- 221 (353)
T 2yrr_A 145 AIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KRGWYLDLARVA-- 221 (353)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CSCSTTCHHHHH--
T ss_pred HHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc-CCCccccHHHHh--
Confidence 999999999999999999998877666655678999999999 6778889999999988776652 111100000000
Q ss_pred CCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe
Q 012718 308 STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV 387 (458)
Q Consensus 308 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (458)
.. .......++++...+.++.++++.+.+.+++++.++++++++++.+.|+++ ++++..+.. ..+.+++|.+
T Consensus 222 -~~--~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----~~~~~~~~~~ 293 (353)
T 2yrr_A 222 -EH--WERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKAS----PLPTVLVVRP 293 (353)
T ss_dssp -HH--HTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSS----BCTTEEEEEC
T ss_pred -hh--hhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCcc----CCCeEEEEEC
Confidence 00 001234568898888888899999888789999999999999999999988 888876431 2355778998
Q ss_pred C-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH-HHHHHHHHHHHh
Q 012718 388 E-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD-EFIHALNETVSF 453 (458)
Q Consensus 388 ~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~-~l~~~l~~~~~~ 453 (458)
+ +.+..++.+.|.++ ||.+++|..+ ..++++|++++.+++.+|++ +++++|++++++
T Consensus 294 ~~~~~~~~~~~~l~~~-gi~v~~g~~~--------~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 294 PEGVDADRLVRALYAE-GVAVAGGIGP--------TRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp CTTCCHHHHHHHHHHT-TEECEECCGG--------GTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHC-CEEEeCCccc--------cCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 6 56788999999998 9999988633 12578999998778999999 999999998764
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=303.61 Aligned_cols=345 Identities=19% Similarity=0.209 Sum_probs=268.8
Q ss_pred CCeEEecCC-CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHH-HHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNA-ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKK-VAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
++++|||.+ +.+++++.+.+++.+++...........+..++...+..+++++. +++++|.+ +|++|+|+|+|+.
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGAREAKF 83 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEESSHHHHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEeCChHHHHH
Confidence 678999994 577889999999998876432100000122223345667789999 99999987 8999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe--CCCCCCCCHHHHHHhhc-----CCceEEEEec
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN--LNDDESPDLDKLKEMLS-----RKTKLVVIHH 216 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~--~~~~~~~d~~~l~~~l~-----~~~~~v~~~~ 216 (458)
.++.++ +++||+|++++++|++.... ++..|++++.++ .++++.+|++++++.++ +++++|++++
T Consensus 84 ~~~~~~----~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 84 AVMHSL----AKKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp HHHHHH----CCTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred HHHHHH----hCCCCEEEEccCcchHHHHH----HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 999998 67999999999999976443 566799999999 77778899999999998 7899999999
Q ss_pred ccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEecccccc-CCCcc
Q 012718 217 ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSA-MPPFL 294 (458)
Q Consensus 217 ~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~-l~~~~ 294 (458)
++||||.+.|+++|.++|+++|+++|+|++|+.+..++++...++|++++|+|| +.++.++|++++++++++. +.+..
T Consensus 156 ~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~ 235 (371)
T 2e7j_A 156 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSE 235 (371)
T ss_dssp SCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCS
T ss_pred CCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccc
Confidence 999999999999999999999999999999999887666666678999999999 5566779999999998777 76544
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHHhcCCCEEEeCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE--MELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~--~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
.++.. ...++.++++..++.++.++++++.. ++.+++ +++++++.+.|+++ ++++..+.
T Consensus 236 ~~~~~--------------~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 296 (371)
T 2e7j_A 236 KYKNK--------------EVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGDN 296 (371)
T ss_dssp SCTTS--------------BGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESSS
T ss_pred cCccc--------------ccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecCC
Confidence 32111 01234678888888888888887765 667778 89999999999888 88887653
Q ss_pred CCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhc---CC-CCeEE-EeeCCC-CCHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYL---GV-NASAR-ASLHFY-NTKEDVDEFIHA 446 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~---g~-~~~lR-is~~~~-~t~~di~~l~~~ 446 (458)
. .+++++++.++ +..++.+.|.++ ||.+.+ ..+ .. |. ++++| ++++.+ ++++|+++++++
T Consensus 297 ~----~~~~~~~~~~~--~~~~~~~~l~~~-gi~~~~-~~~------~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~ 362 (371)
T 2e7j_A 297 P----HNHDLMFFHAE--VLYEISKKAKGG-RFFLYR-ELK------SRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNA 362 (371)
T ss_dssp S----CCSSEEEEECH--HHHHHHHHSSSG-GGHHHH-HHH------HTTEECSCTTCCSEEEEECTTCCHHHHHHHHHH
T ss_pred C----ccCceEEEECC--CHHHHHHHHHHC-CEEEEe-ccc------cccccCCCCCceEEEEeeccCCCHHHHHHHHHH
Confidence 2 13678999886 567888888877 998875 211 11 21 57899 999988 899999999999
Q ss_pred HHHHHHhh
Q 012718 447 LNETVSFF 454 (458)
Q Consensus 447 l~~~~~~~ 454 (458)
|+++++++
T Consensus 363 l~~~~~~~ 370 (371)
T 2e7j_A 363 FKEIIEKY 370 (371)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99998764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=293.73 Aligned_cols=350 Identities=13% Similarity=0.101 Sum_probs=271.4
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEE-EeCChhHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV-FTKNATEAINLVAY 147 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~-~t~g~t~a~~~~~~ 147 (458)
.+.-+.++.++|+.+.+++.+.+. . ..+....+..+++++.+++++|++.+.+++ +|+|+|+|+++++.
T Consensus 20 ~~~~~pgp~~~~~~v~~a~~~~~~-----~-----~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~ 89 (376)
T 3f0h_A 20 MLNFTVGPVMSSEEVRAIGAEQVP-----Y-----FRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVM 89 (376)
T ss_dssp CEECSSSSCCCCHHHHHHHTSCCC-----C-----CSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHH
T ss_pred ceeecCCCCCCcHHHHHHhcCCCC-----C-----CCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHH
Confidence 334444566788888888765421 1 112344577888999999999998543555 58999999999999
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
++ +++||+|+++++.|++. .+...+...|++++.++.+.++.+|++++++.+++++++|++++++||||.+.|+
T Consensus 90 ~~----~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l 163 (376)
T 3f0h_A 90 NC----FTKKDKVLVIDGGSFGH--RFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDT 163 (376)
T ss_dssp HH----CCTTCCEEEEESSHHHH--HHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCH
T ss_pred hc----cCCCCeEEEEeCChhhH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCH
Confidence 88 68999999999988864 2345677789999999998888899999999998899999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
++|.++|+++|+++|+|++|+.+..++++...++|++++|+||+++ +.|+|++++++++++.+.+....... .+
T Consensus 164 ~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~-----~~ 238 (376)
T 3f0h_A 164 MMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMY-----FD 238 (376)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCST-----TC
T ss_pred HHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCcee-----ec
Confidence 9999999999999999999999888777766779999999999776 88999999999877665432211000 00
Q ss_pred CCCC-CCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEE
Q 012718 307 HSTF-ADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCS 384 (458)
Q Consensus 307 ~~~~-~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~ 384 (458)
...+ ..........+++...++++.++++++.+. +++++.++.+++++++.+.|+++ ++++..+.. ...++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~-----~~~~~~ 312 (376)
T 3f0h_A 239 LKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESP-----ANGVTS 312 (376)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSB-----BTTEEE
T ss_pred HHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCcccc-----CceEEE
Confidence 0000 000011224467777778888999988887 58999999999999999999988 777765432 244666
Q ss_pred EEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 385 FNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+..++.+..++.+.|.+++||.+++|.. ...++++|++++.+++++|+++++++|++++++
T Consensus 313 ~~~~~~~~~~l~~~l~~~~gi~v~~g~~--------~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 313 VHPTTANAYDIFLKLKDEYGIWICPNGG--------EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp EEESSSCHHHHHHHHHHHSSEECEECCG--------GGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCHHHHHHHHHHhCCEEEecCcc--------ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 6666777889999999877999988731 012679999999889999999999999998864
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=286.92 Aligned_cols=351 Identities=15% Similarity=0.186 Sum_probs=268.6
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHH-HHHHHHHHHHHHHcCCCCC-CcEEEeCChhHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKAT-DEYELARKKVAAFINASDS-GEIVFTKNATEAINLV 145 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~a~~~~ 145 (458)
.+.|+.+ +...++.+.+++.+.+ + +. ..... ...+++++.+++++|.+.. +++++|+|+|+|+.++
T Consensus 5 ~~~~~~g-p~~~~~~v~~a~~~~~---------~-~~-~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~ 72 (366)
T 1m32_A 5 YLLLTPG-PLTTSRTVKEAMLFDS---------C-TW-DDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAV 72 (366)
T ss_dssp CEECSSS-SCCCCHHHHHTTCCCC---------C-TT-SHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHH
T ss_pred cccccCC-CcCCCHHHHHHHhhhh---------c-CC-CHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHH
Confidence 3556555 4467888888876631 1 11 11223 5677899999999993311 3799999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcC-CCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC--CceEEEEecccCcCc
Q 012718 146 AYSWGLSNLKSGDEVILTV-AEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR--KTKLVVIHHISNMLA 222 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~-~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~--~~~~v~~~~~~n~tG 222 (458)
+.++ .++||+|++.+ +.|++. +...++..|++++.+++++++.+|++++++.+++ ++++|++++++||||
T Consensus 73 ~~~~----~~~gd~vi~~~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG 145 (366)
T 1m32_A 73 LGSA----LGPQDKVLIVSNGAYGAR---MVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTG 145 (366)
T ss_dssp HHHS----CCTTCCEEEEESSHHHHH---HHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTT
T ss_pred HHHh----cCCCCeEEEEeCCCccHH---HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcc
Confidence 9998 57889887776 445432 3455677799999999988888999999999976 578999999999999
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceE
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~ 301 (458)
.+.|+++|.++|+++|+++|+|++|+.+..++++...++|++++|+|| ++|+.|+|++++++++++.+.....++....
T Consensus 146 ~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 1m32_A 146 MLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDL 225 (366)
T ss_dssp EECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCH
T ss_pred eecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccH
Confidence 999999999999999999999999999888777777789999999999 5588889999999988777764321110000
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA 380 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 380 (458)
.... ..+. .......++++...+.++.++++.+...| ++++.++++++++++.+.|+++ ++++..+.. ...+
T Consensus 226 ~~~~--~~~~-~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~---~~~~ 298 (366)
T 1m32_A 226 YAQW--RCME-DNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDE---LHSP 298 (366)
T ss_dssp HHHH--HHHH-HTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGG---GBCS
T ss_pred HHHH--hhhc-ccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCch---hcCc
Confidence 0000 0000 00011235788888889999999988877 8899999999999999999987 776654421 0123
Q ss_pred cEEEEEeC---CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 381 ALCSFNVE---NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 381 ~~v~~~~~---~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.++++.++ +.+..++.+.|.++ ||.+++|..| ..+++|++++.+++++|+++++++|+++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~---------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 299 IITAFYSPEDPQYRFSEFYRRLKEQ-GFVIYPGKVS---------QSDCFRIGNIGEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp SEEEEECCCCTTCCHHHHHHHHHHT-TEECEECCCS---------SSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEEcCccCCCCHHHHHHHHHHC-CEEEECCcCC---------CCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 48899987 56788999999988 9999988754 15799999999899999999999999987654
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=289.98 Aligned_cols=348 Identities=14% Similarity=0.186 Sum_probs=264.1
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCC--CcchhhhHHHHHHHHHHHHHHHHcCCCCCCc-EEEeCChhHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHR--GIHFLSAKATDEYELARKKVAAFINASDSGE-IVFTKNATEAIN 143 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~-v~~t~g~t~a~~ 143 (458)
+.+|+++.+..++|+.+.+++.+++..+..+... .....+....+..+++++.+++++|++++++ +++|+|+|++++
T Consensus 3 ~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~ 82 (362)
T 2c0r_A 3 ERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA 82 (362)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred cceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHH
Confidence 4589999999999999999999887543211100 0122334556778899999999999975325 577899999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--C-C-CCCHHHHHHhhcCCceEEEEecccC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--D-E-SPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~-~-~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
.++.++ +++||+|++.++.|++. .+...++..| +++.++++. + + .+|+++++ +++++++|++++++|
T Consensus 83 ~~~~~l----~~~gd~vl~~~~~~~~~--~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n 153 (362)
T 2c0r_A 83 MIPMNF----LKEGQTANYVMTGSWAS--KALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNET 153 (362)
T ss_dssp HHHHHH----CCTTCEEEEEECSHHHH--HHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEET
T ss_pred HHHHhc----CCCCCeEEEEecCcHhH--HHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcC
Confidence 999998 68999999887776653 2345667779 999998862 2 2 34665553 677899999999999
Q ss_pred cCccc-ccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCc
Q 012718 220 MLASI-LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGE 298 (458)
Q Consensus 220 ~tG~~-~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~ 298 (458)
|||.. .|+++| +|+++++|++|+.+..++++.+. |++++|+||++||.|+|++++++++++.+.+......
T Consensus 154 ~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~~--d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~ 225 (362)
T 2c0r_A 154 IEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTML 225 (362)
T ss_dssp TTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGG
T ss_pred ccceeccccccc------CCCEEEEEChhhccCCccchhHC--cEEEEeccccccCcCcEEEEEcHHHHhhccccCchHH
Confidence 99996 567776 89999999999999887776654 9999999999999999999999998877764211000
Q ss_pred ceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCCCCCc
Q 012718 299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNI-RIYGPKPSEH 376 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~-~~~~~~~~~~ 376 (458)
+...+. ......+|++...+.++.++++.+.+. +++++.++.+++++++.+.|++++++ ++..++.
T Consensus 226 -------~~~~~~--~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--- 293 (362)
T 2c0r_A 226 -------RYDTYV--KNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVD--- 293 (362)
T ss_dssp -------CHHHHH--HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGG---
T ss_pred -------hHHHHh--hccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChH---
Confidence 000000 011234789999999999999988776 68999999999999999999998535 7654321
Q ss_pred CccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 377 VQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 377 ~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
....++++|.+++ .+..++.+.|.++ ||.+.+|..+ .+++|+|++.+++++|++++++.|++++++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~L~~~-gi~~~~g~~~----------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 294 SRSDMNITFRLASEELEKEFVKASEQE-GFVGLKGHRS----------VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp GBCSSEEEEECSCHHHHHHHHHHHHHT-TEESCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEEcCCcchHHHHHHHHHHC-CCeeccCCCC----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 1235688898873 4567899999888 9988877532 3579999999999999999999999988653
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=285.42 Aligned_cols=357 Identities=17% Similarity=0.175 Sum_probs=265.6
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC---CCcEEEeCChhHHHHHHH
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD---SGEIVFTKNATEAINLVA 146 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~---~~~v~~t~g~t~a~~~~~ 146 (458)
++...++..+++.+.+++.+.... + ..........++++.++++++... .++|++|+|+|+|+.+++
T Consensus 7 ~~~~p~p~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~ 76 (385)
T 2bkw_A 7 TLLIPGPIILSGAVQKALDVPSLG---------H-TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFA 76 (385)
T ss_dssp EECSSSSCCCCHHHHHTTSCCCCC---------T-TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHH
T ss_pred eeecCCCcCchHHHHHHHhccccc---------c-CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHH
Confidence 445555667788888887654211 1 122234456678888888887641 248999999999999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CCCCCCCHHHHHHhhcC-CceEEEEecccCcCccc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASI 224 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~ 224 (458)
.++.. .+++||+|++++..+++.. +...++..|++++.+++ ++++.+|++++++++++ ++++|++++++||||.+
T Consensus 77 ~~~~~-~~~~gd~vlv~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 153 (385)
T 2bkw_A 77 SNFIL-SKAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVL 153 (385)
T ss_dssp HHHSC-TTCSCCEEEEECSSHHHHH--HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEE
T ss_pred HHHhc-cCCCCCeEEEEcCCcchHH--HHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeE
Confidence 98821 1278999988855443321 23456678999999999 77888999999999987 88999999999999999
Q ss_pred ccHHHHHHHHHhc--CcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccc-cCCC------cc
Q 012718 225 LPIEEIVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLS-AMPP------FL 294 (458)
Q Consensus 225 ~~l~~i~~l~~~~--~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~-~l~~------~~ 294 (458)
.|+++|.++|+++ |+++|+|++|+.+..++++...++|++++|+|| ++||.|+|+++++++.++ .+.+ ..
T Consensus 154 ~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~ 233 (385)
T 2bkw_A 154 SDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHG 233 (385)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSC
T ss_pred cCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCc
Confidence 9999999999999 999999999999888777777889999999999 667889999999988766 5531 11
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-hcCCCEEEeCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL-LSIPNIRIYGPKP 373 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L-~~~~~~~~~~~~~ 373 (458)
.++.... .......+.. ......++++...++++.++++.+.+.+++++.++++++++++.+.| +++ ++++..+.+
T Consensus 234 ~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~ 310 (385)
T 2bkw_A 234 YFSSLRR-WTPIMENYEA-GKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYP 310 (385)
T ss_dssp STTCHHH-HHHHHHHHHT-TCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSS
T ss_pred eeecHHH-HhhHHHhhhc-cCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCc
Confidence 1110000 0000000000 01122468899899999999999887789999999999999999999 888 888765332
Q ss_pred CCcC-ccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe-eCC---CCCHHHHHHHHHHHH
Q 012718 374 SEHV-QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS-LHF---YNTKEDVDEFIHALN 448 (458)
Q Consensus 374 ~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis-~~~---~~t~~di~~l~~~l~ 448 (458)
. . ..+++++|.+++ ..++.+.|.++ ||.+++|..+.. .++++|++ ++. .++++|+++++++|+
T Consensus 311 ~--~~~~~~~~~~~~~~--~~~~~~~l~~~-gi~v~~g~~~~~-------~~~~iRis~~~~~~~~~~~e~i~~~~~~l~ 378 (385)
T 2bkw_A 311 S--NMSAHGLTAVYVAD--PPDVIAFLKSH-GVVIAGGIHKDI-------GPKYIRIGHMGVTACNKNLPYMKNCFDLIK 378 (385)
T ss_dssp S--TTBCSSCEEEECSC--HHHHHHHHHHT-TEECBCCCCTTT-------GGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred c--cccCCceEEEecCC--HHHHHHHHHHC-CeEEeCCCCccc-------CCCEEEEEccccccccCCHHHHHHHHHHHH
Confidence 1 1 236689999875 77899999887 999998764311 15689999 652 479999999999999
Q ss_pred HHHHhh
Q 012718 449 ETVSFF 454 (458)
Q Consensus 449 ~~~~~~ 454 (458)
++++++
T Consensus 379 ~~~~~~ 384 (385)
T 2bkw_A 379 LALQRK 384 (385)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 987654
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=288.26 Aligned_cols=346 Identities=16% Similarity=0.175 Sum_probs=263.3
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchh---hhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCh-hHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFL---SAKATDEYELARKKVAAFINASDSGEIVFTKNA-TEAINL 144 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~-t~a~~~ 144 (458)
+|+++.+..++|+.+.+++.+.+... .++..+.+.. .....+..+++++.+++++|++.+++|++|+|+ |+|+..
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~ 82 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM 82 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHH
Confidence 56666666789999999999887543 3333222211 445667888999999999999743589999998 999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHH-hhcCCceEEEEecccCcCc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKE-MLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~-~l~~~~~~v~~~~~~n~tG 222 (458)
++.++... -++||.|+++.++|.+ ...++..| +++.+++++ ++.+|++++++ .+++++++|++++++||||
T Consensus 83 ~~~~l~~~-~~~g~~vi~~~~~~~~-----~~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG 155 (360)
T 1w23_A 83 LPMNLLTK-GTIGNYVLTGSWSEKA-----LKEAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYG 155 (360)
T ss_dssp HHHHHCCT-TCEEEEEECSHHHHHH-----HHHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTT
T ss_pred HHHHhcCC-CCcccEEEecchhHHH-----HHHHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcc
Confidence 99888321 1346677877776664 22356679 999999875 56679999998 8888999999999999999
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEe
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISD 302 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~ 302 (458)
.++| ++++++|+++|+|++|+.+..++++.++ |++++|+||++||.|+|++++++++++.+.+.. ++...
T Consensus 156 ~~~~-----~i~~~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~-~~~~~-- 225 (360)
T 1w23_A 156 TQYQ-----NFPEINHAPLIADMSSDILSRPLKVNQF--GMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQV-PTMLQ-- 225 (360)
T ss_dssp EECS-----SCCCCCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTC-CGGGC--
T ss_pred eecc-----cccccCCceEEEechhhcCCCCcCcccC--CEEEEEcccccCCCCcEEEEEcHHHHhhcccCC-cchhh--
Confidence 9988 3444899999999999998877666554 899999999999989999999998887776543 11110
Q ss_pred eecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCE-EEeCCCCCCcCccc
Q 012718 303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNI-RIYGPKPSEHVQRA 380 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~-~~~~~~~~~~~~~~ 380 (458)
...+. ..++..++++...+.++..+++++.+. +++++.++.+++++++.+.|++++++ .+..++ ..++
T Consensus 226 ----~~~~~--~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~~~~ 295 (360)
T 1w23_A 226 ----YATHI--KSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEK----GSRS 295 (360)
T ss_dssp ----HHHHH--HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCG----GGBC
T ss_pred ----hhhhh--hccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCc----hhcc
Confidence 00000 023456789999999999999988775 58899999999999999999988654 543211 1124
Q ss_pred c-EEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 381 A-LCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 381 ~-~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+ +++|.+++. +..++.+.|.++ ||.+.+|..+ ++++|++++.+++++|+++++++|++++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~~~~----------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 296 LMNVTFNLRNEELNQQFLAKAKEQ-GFVGLNGHRS----------VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-TEESCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCccHHHHHHHHHHC-CeeeecCCCC----------CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 5 899998752 346788888877 9999877521 578999999989999999999999998764
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=281.78 Aligned_cols=321 Identities=17% Similarity=0.186 Sum_probs=256.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+++++|+.+... ++++.+.+++.+.+.....++ ....+++++.+++++|++++ +|++|+|+|++++.
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~-~v~~~~g~t~a~~~ 99 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSVETEIYP-----------DGWASSLRKEVADFYQLEEE-ELIFTAGVDELIEL 99 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGG-GEEEESSHHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHHHhhcCC-----------CcchHHHHHHHHHHhCCChh-hEEEeCCHHHHHHH
Confidence 578999998666 578888888877543221111 23456899999999998765 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++.++ +++||+|+++.++|++ +...++..|++++.++.++++.+|++++++.+++++++|++++++||||.+
T Consensus 100 ~~~~~----~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~ 171 (363)
T 3ffh_A 100 LTRVL----LDTTTNTVMATPTFVQ----YRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNY 171 (363)
T ss_dssp HHHHH----CSTTCEEEEEESSCHH----HHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred HHHHH----ccCCCEEEEcCCChHH----HHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCC
Confidence 99988 6899999999999994 456667779999999999888999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhc--CcEEEEeccccCCcc-----cCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcc
Q 012718 225 LPIEEIVHWSHDV--GAKVLVDACQSVPHM-----VVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 225 ~~l~~i~~l~~~~--~~~vivD~a~~~g~~-----~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~ 294 (458)
+|++++.++++.. |+++|+|++|+.... ... ....+.++++.|++|.+|++| +|++++++++++.+....
T Consensus 172 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~ 251 (363)
T 3ffh_A 172 IELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVR 251 (363)
T ss_dssp CCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhC
Confidence 9999999998877 999999999983221 111 122346788999999998777 599999888776654322
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
. ..+++.....++..+++.. ..+++.+++++++++++.+.|++++++++..+.
T Consensus 252 ~-----------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-- 304 (363)
T 3ffh_A 252 P-----------------------PFNTTSIGQKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFEKVKLYPAN-- 304 (363)
T ss_dssp C-----------------------SCCCBHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCC--
T ss_pred C-----------------------CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCCCceECCCC--
Confidence 1 2356666677777777633 236788899999999999999986688876433
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
++++++.++. +..++.+.|.++ ||.+++|..+ +.++++|++++ +++|+++++++|++++
T Consensus 305 -----~~~~~~~~~~-~~~~~~~~l~~~-gi~v~~g~~~--------~~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 305 -----GNFVLIDLGI-EAGTIFSYLEKN-GYITRSGAAL--------GFPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp -----SSEEEEECSS-CHHHHHHHHHHT-TEECEETTTT--------TCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred -----CeEEEEECCC-CHHHHHHHHHHC-CeEEEeCccC--------CCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 6788999876 778999999988 9999988743 34689999988 8999999999998763
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=283.97 Aligned_cols=335 Identities=18% Similarity=0.129 Sum_probs=261.9
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
.|+.++.. ++++.+.+++.+++.....++. ......+..+++++.+++++|++++ +|++|+|+|+|+..++.+
T Consensus 33 ~~~~~~~~-~~~~~v~~a~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~la~~~~~~~~-~i~~~~ggt~a~~~~~~~ 105 (397)
T 3f9t_A 33 NIFGSMCS-NVLPITRKIVDIFLETNLGDPG-----LFKGTKLLEEKAVALLGSLLNNKDA-YGHIVSGGTEANLMALRC 105 (397)
T ss_dssp CBCSCSCC-CCCTHHHHHHHHHTTCCTTSGG-----GBHHHHHHHHHHHHHHHHHTTCTTC-EEEEESCHHHHHHHHHHH
T ss_pred CeEEEecC-CCcHHHHHHHHHHHhhcCCCcc-----cChhHHHHHHHHHHHHHHHhCCCCC-CEEEecCcHHHHHHHHHH
Confidence 56776644 4556788888887654322221 1124567778899999999999876 899999999999999998
Q ss_pred cCCC---------CCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEeccc
Q 012718 149 WGLS---------NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHIS 218 (458)
Q Consensus 149 l~~~---------~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~ 218 (458)
+... ...+||+|+++.++|++. ...++..|++++.++.++++.+|++++++.+++ ++++|++++++
T Consensus 106 ~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 181 (397)
T 3f9t_A 106 IKNIWREKRRKGLSKNEHPKIIVPITAHFSF----EKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGT 181 (397)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEETTCCTHH----HHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSC
T ss_pred HHHHHHhhhhhcccCCCCeEEEECCcchhHH----HHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCC
Confidence 7311 112499999999999964 555666799999999998899999999999998 89999999999
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEeccccCCcc--------------cCCCCCCCCcEEEecccCCC-CCCceeEEEEe
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM--------------VVDVQGLDADFLVASSHKMC-GPTGIGFLFGK 283 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~--------------~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~ 283 (458)
||||.+.|+++|.++|+++|+++|+|++|+.+.. ++++.. +.|++++|+||++ ++.++|+++++
T Consensus 182 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~ 260 (397)
T 3f9t_A 182 TELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFK 260 (397)
T ss_dssp TTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEES
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEe
Confidence 9999999999999999999999999999985543 344444 7899999999966 56679999997
Q ss_pred ccc-cccCC---CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 284 SDL-LSAMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 284 ~~~-~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++. .+.+. ++..++. .....++.+.....++.++++.+...+++++.++.+++++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (397)
T 3f9t_A 261 DIGYKRYLDVDAPYLTETR----------------QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKK 324 (397)
T ss_dssp SGGGGGGTCEECTTSSSSE----------------ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhhccCCccccCCC----------------ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 754 34442 2222111 011235555556777778888877777889999999999999999
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
|+++ ++++..++ .+++++|.+++ ..++.+.|.++ ||.++++.. ++++|++++.+++++|
T Consensus 325 L~~~-g~~~~~~~------~~~~~~~~~~~--~~~~~~~l~~~-gi~v~~~~~-----------~~~~Ri~~~~~~~~e~ 383 (397)
T 3f9t_A 325 LKEN-NFKPVIEP------ILNIVAIEDED--YKEVCKKLRDR-GIYVSVCNC-----------VKALRIVVMPHIKREH 383 (397)
T ss_dssp HHHT-TCCBSSCC------SSSEEEEECTT--HHHHHHHHHHT-TCBCEECSS-----------SSEEEEECCTTCCHHH
T ss_pred HHHC-CCEEEcCC------CccEEEEEeCC--HHHHHHHHHhC-CeEEeccCC-----------CCEEEEEEcCCCCHHH
Confidence 9988 77755543 26788888774 67899999988 999987652 5799999998899999
Q ss_pred HHHHHHHHHHHHH
Q 012718 440 VDEFIHALNETVS 452 (458)
Q Consensus 440 i~~l~~~l~~~~~ 452 (458)
+++++++|+++++
T Consensus 384 i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 384 IDNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998875
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=281.40 Aligned_cols=323 Identities=15% Similarity=0.174 Sum_probs=257.2
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHh--ccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAY--NSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
+++++|+.+... +.|+.+.+++.+.+... ..++. ...+++++++++++|++..++|++|+|+|+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----------~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~ 98 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-----------PSSEALRAKLKEVMQVPAGMEVLLGNGSDEII 98 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-----------CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-----------CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHH
Confidence 678999988765 57889999999988742 11111 12458999999999994334999999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcC
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNML 221 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t 221 (458)
++++.++ +++||+|+++.++|++... .++..|++++.++.++++.+|++++++.+++ ++++|++++++|||
T Consensus 99 ~~~~~~~----~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~npt 170 (367)
T 3euc_A 99 SMLALAA----ARPGAKVMAPVPGFVMYAM----SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPT 170 (367)
T ss_dssp HHHHHHT----CCTTCEEEEEESCSCCSCH----HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTT
T ss_pred HHHHHHH----cCCCCEEEEcCCCHHHHHH----HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCC
Confidence 9999988 7899999999999997643 3556799999999998889999999999988 89999999999999
Q ss_pred ccccc---HHHHHHHHHhc--CcEEEEeccccCCcc---cCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCC
Q 012718 222 ASILP---IEEIVHWSHDV--GAKVLVDACQSVPHM---VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMP 291 (458)
Q Consensus 222 G~~~~---l~~i~~l~~~~--~~~vivD~a~~~g~~---~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~ 291 (458)
|.++| +++|+++|++| |+++|+|++|+.... ...+...+.++++.|+||. ++.| +|++++++++++.+.
T Consensus 171 G~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~ 249 (367)
T 3euc_A 171 GNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLD 249 (367)
T ss_dssp CCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHG
T ss_pred CCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHH
Confidence 99987 67788889999 999999999983211 1123345577999999998 6665 899999888776654
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
.... ..+++.....++..+++. . ..+++..++++++++++.+.|+++|++++..+
T Consensus 250 ~~~~-----------------------~~~~~~~~~~a~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~ 304 (367)
T 3euc_A 250 KVRP-----------------------PYNVNVLTEATALFALEH-V-AVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS 304 (367)
T ss_dssp GGCC-----------------------SSCCCHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC
T ss_pred HhCC-----------------------CCCCCHHHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC
Confidence 3221 234666677777777765 2 23678889999999999999999989886433
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
. +.++++.++ +..++.+.|.++ ||.++++..|... .++++|++++ +++|+++++++|++++
T Consensus 305 ~-------~~~~~~~~~--~~~~l~~~l~~~-gi~v~~~~~~~~~------~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 305 A-------ANFLLARVP--DAAQTFDRLLAR-KVLIKNVSKMHPL------LANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp S-------SSEEEEECS--CHHHHHHHHHTT-TEECEECGGGCGG------GTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred C-------CeEEEEECC--CHHHHHHHHHHC-CeEEEECCccCCC------CCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 2 678888887 678899999888 9999988765422 2689999987 8999999999999886
Q ss_pred H
Q 012718 452 S 452 (458)
Q Consensus 452 ~ 452 (458)
+
T Consensus 366 ~ 366 (367)
T 3euc_A 366 Q 366 (367)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=288.70 Aligned_cols=350 Identities=14% Similarity=0.148 Sum_probs=260.9
Q ss_pred hcCCCCcccccccCCCCeEEecCCCCC-----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC
Q 012718 51 TRPDFPILHQEVYGSKKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN 125 (458)
Q Consensus 51 ~r~~f~~~~~~~~~~~~~i~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g 125 (458)
+|..+..+.....+++++++|+.+... ++++.+.+++.+.+.....+.+ .......+++++++++++
T Consensus 39 i~~~~~~~~~~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y--------~~~~g~~~lr~~la~~~~ 110 (427)
T 3dyd_A 39 IRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGY--------APSIGFLSSREEIASYYH 110 (427)
T ss_dssp --------CCCCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSC--------CCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCC--------CCCCCcHHHHHHHHHHHh
Confidence 444444443333335778999988753 7889999999998875321111 112334589999999998
Q ss_pred -----CCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCH
Q 012718 126 -----ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDL 198 (458)
Q Consensus 126 -----~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~ 198 (458)
++++ +|++|+|+|+|+.+++.++ .++||+|+++.|+|++ +...++..|++++.++.++ ++.+|+
T Consensus 111 ~~~~~~~~~-~v~~t~g~t~al~~~~~~l----~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~ 181 (427)
T 3dyd_A 111 CPEAPLEAK-DVILTSGCSQAIDLCLAVL----ANPGQNILVPRPGFSL----YKTLAESMGIEVKLYNLLPEKSWEIDL 181 (427)
T ss_dssp BTTBCCCGG-GEEEESSHHHHHHHHHHHH----CCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEEEEGGGTTEECH
T ss_pred hcCCCCChH-HEEEecCcHHHHHHHHHHh----cCCCCEEEEcCCCchh----HHHHHHHcCCEEEEEecccccCCCCCH
Confidence 5554 9999999999999999998 6799999999999984 4666777899999999864 467899
Q ss_pred HHHHHhhcCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCCCCC---CcEEEecc
Q 012718 199 DKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQGLD---ADFLVASS 268 (458)
Q Consensus 199 ~~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~~~---~d~~~~s~ 268 (458)
+.+++.++++++++++++++||||.++| +++|+++|+++|+++|+|++|+... ....+...+ ..++++|+
T Consensus 182 ~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~ 261 (427)
T 3dyd_A 182 KQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGL 261 (427)
T ss_dssp HHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEES
T ss_pred HHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeec
Confidence 9999999989999999999999999999 9999999999999999999998522 212222222 23778899
Q ss_pred cCCCCCCc--eeEEEEecc-------ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 269 HKMCGPTG--IGFLFGKSD-------LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 269 ~K~~gp~g--~G~l~~~~~-------~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
||.|+.+| +|+++++++ +++.+..... ...+++.....++..+++....
T Consensus 262 sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~----------------------~~~~~~~~~~~a~~~~L~~~~~ 319 (427)
T 3dyd_A 262 AKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQ----------------------RILGPCTIVQGALKSILCRTPG 319 (427)
T ss_dssp TTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH----------------------HHCCSCHHHHHHHHHHHHHSCH
T ss_pred cccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHh----------------------ccCCCCHHHHHHHHHHHHhcCH
Confidence 99888777 899999863 2222221110 0235677677777777764323
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC------CCChHHHHHHHh-hhcCeEeccCCC
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE------NIHPTDIATLLD-QQYGVATRSGHH 412 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~l~-~~~gi~~~~g~~ 412 (458)
..+++..++++++++++.+.|+++|++++..+.. +.++++.++ +.+..++++.|. ++ ||.+.+|..
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~------g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-gV~v~~g~~ 392 (427)
T 3dyd_A 320 EFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSG------AMYLMVGIEMEHFPEFENDVEFTERLVAEQ-SVHCLPATC 392 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSB------TTEEEEEECGGGCTTCSSHHHHHHHHHHHH-CEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCe------eEEEEEecCHhhcCCCCCHHHHHHHHHHHC-CEEEECCcc
Confidence 3467888899999999999999998998776542 557787776 245678888886 56 999999874
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
| +.++++||+++ ++++++++++++|.+++++.++
T Consensus 393 ~--------~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~~ 426 (427)
T 3dyd_A 393 F--------EYPNFIRVVIT--VPEVMMLEACSRIQEFCEQHYH 426 (427)
T ss_dssp G--------TCTTEEEEESC--SCHHHHHHHHHHHHHHHHHHCC
T ss_pred c--------CCCCeEEEEEC--CCHHHHHHHHHHHHHHHHHhhc
Confidence 4 33689999987 7999999999999999987653
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=277.75 Aligned_cols=322 Identities=13% Similarity=0.134 Sum_probs=258.1
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
++++++|+.+... ++++.+.+++.+.+.....+ .....+++++.+++++|++++ +|++|+|+++|+.
T Consensus 15 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y-----------~~~~~~~l~~~la~~~~~~~~-~i~~~~g~~~a~~ 82 (354)
T 3ly1_A 15 TDNPIRINFNENPLGMSPKAQAAARDAVVKANRY-----------AKNEILMLGNKLAAHHQVEAP-SILLTAGSSEGIR 82 (354)
T ss_dssp SSSCEECSSCCCSSCCCHHHHHHHHHTGGGTTSC-----------CHHHHHHHHHHHHHHTTSCGG-GEEEESHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHhhCcCC-----------CCCchHHHHHHHHHHhCCChH-HEEEeCChHHHHH
Confidence 4788999988766 58889999988876532111 123567899999999998765 9999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc--CCceEEEEecccCcC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS--RKTKLVVIHHISNML 221 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~--~~~~~v~~~~~~n~t 221 (458)
+++.++ .++||+|+++.++|++ +...++..|++++.++.++++.+|++++++.++ +++++|++++++|||
T Consensus 83 ~~~~~l----~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~npt 154 (354)
T 3ly1_A 83 AAIEAY----ASLEAQLVIPELTYGD----GEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPT 154 (354)
T ss_dssp HHHHHH----CCTTCEEEEESSSCTH----HHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTT
T ss_pred HHHHHH----hCCCCeEEECCCCchH----HHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCc
Confidence 999988 6899999999999995 455667789999999998888999999999998 789999999999999
Q ss_pred cccccHHHHHHHHHh--cCcEEEEeccccCCcccC---C----CCCC-CCcEEEecccCCCCCCc--eeEEEEecccccc
Q 012718 222 ASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVV---D----VQGL-DADFLVASSHKMCGPTG--IGFLFGKSDLLSA 289 (458)
Q Consensus 222 G~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~---~----~~~~-~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~ 289 (458)
|.++|++++.++++. +|+++|+|++|+.....- . .... +.+++++|+||.+|++| +|++++++++++.
T Consensus 155 G~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~ 234 (354)
T 3ly1_A 155 GTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIAL 234 (354)
T ss_dssp CCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHH
T ss_pred CCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHH
Confidence 999998888888777 999999999998433211 1 1223 56799999999888666 8999998887766
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
+..... .++++.....++..+++... .+++.+++++++++++.+.|+++ ++++.
T Consensus 235 ~~~~~~-----------------------~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ 288 (354)
T 3ly1_A 235 MGRYVA-----------------------GEKINFSGVDAALASMNDSA--FITYSKKSNDVSRQILLKALEDL-KLPYL 288 (354)
T ss_dssp HGGGTT-----------------------CSCCCHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHHHHHHH-TCCBC
T ss_pred HHHhcC-----------------------CCCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC-CCeEC
Confidence 653322 13667767777777766442 36788899999999999999887 66654
Q ss_pred CCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.+. +.++++.+++ +..++.+.|.++ ||.++ |.++ +.++++|++++ +++|++++++.|++
T Consensus 289 ~~~-------~~~~~~~~~~-~~~~~~~~l~~~-gi~v~-g~~~--------~~~~~iRis~~---~~~~i~~~~~~l~~ 347 (354)
T 3ly1_A 289 PSE-------GNFVFHQLVV-PLKDYQTHMADA-GVLIG-RAFP--------PADNWCRISLG---TPQEMQWVADTMRE 347 (354)
T ss_dssp CCC-------SSEEEEECSS-CHHHHHHHHHHT-TEECC-CCCT--------TCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCC-------ceEEEEECCC-CHHHHHHHHHHC-CEEEe-ecCC--------CCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 322 6788999876 678899999987 99998 7654 23789999987 78999999999999
Q ss_pred HHHh
Q 012718 450 TVSF 453 (458)
Q Consensus 450 ~~~~ 453 (458)
++++
T Consensus 348 ~l~~ 351 (354)
T 3ly1_A 348 FRKK 351 (354)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=279.92 Aligned_cols=319 Identities=16% Similarity=0.193 Sum_probs=255.2
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+++++|+.+... ++++.+.+++.+.+.....++... ..++|+.+++++|++++ +|++|+|++++++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~-~v~~~~g~~~a~~~ 97 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDDS-----------MIELKSTLAQKYKVQNE-NIIIGAGSDQVIEF 97 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTT-----------CHHHHHHHHHHHTCCGG-GEEEESSHHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCC-----------hHHHHHHHHHHhCCCcc-eEEECCCHHHHHHH
Confidence 567999988655 678999999998876433332211 13789999999998765 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CCCCCCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
++.++ +++||+|+++.++|++ +...++..|++++.+++ ++++ +|++++++.+++++++|++++++||||.
T Consensus 98 ~~~~l----~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~ 168 (365)
T 3get_A 98 AIHSK----LNSKNAFLQAGVTFAM----YEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGE 168 (365)
T ss_dssp HHHHH----CCTTCEEEECSSCCTH----HHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCC
T ss_pred HHHHH----hCCCCEEEEeCCChHH----HHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCC
Confidence 99988 7899999999999994 45566677999999998 5667 9999999999999999999999999999
Q ss_pred cccHHHHHHHHH--hcCcEEEEecccc------CCcccCCC----CCCCCcEEEecccCCCCCCc--eeEEEEecccccc
Q 012718 224 ILPIEEIVHWSH--DVGAKVLVDACQS------VPHMVVDV----QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSA 289 (458)
Q Consensus 224 ~~~l~~i~~l~~--~~~~~vivD~a~~------~g~~~~~~----~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~ 289 (458)
++|++++.++++ ++|+++|+|++|+ .+..+.+. ...+.+++++|+||.+|++| +|++++++++++.
T Consensus 169 ~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 248 (365)
T 3get_A 169 CLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISA 248 (365)
T ss_dssp CCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHH
T ss_pred CcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHH
Confidence 999888888887 6799999999998 32222221 22357899999999888666 8999998887766
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
+..... ..+++.....++..+++.. ..+++.+++++++++++.+.|+++ ++++.
T Consensus 249 ~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 302 (365)
T 3get_A 249 FYKLRA-----------------------PFNVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKH-NIKII 302 (365)
T ss_dssp HHHHSC-----------------------TTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHT-TCEEC
T ss_pred HHHhcC-----------------------CCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhC-CCEEC
Confidence 543221 1246666677777777643 236788899999999999999988 88875
Q ss_pred CCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.+. ++++++.+++.+..++.+.|.++ ||.+++|..| + ++++|++++ +++|++++++.|++
T Consensus 303 ~~~-------~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~--------~-~~~iRis~~---~~~~i~~l~~~l~~ 362 (365)
T 3get_A 303 DSY-------TNFITYFFDEKNSTDLSEKLLKK-GIIIRNLKSY--------G-LNAIRITIG---TSYENEKFFTEFDK 362 (365)
T ss_dssp CCS-------SSEEEEECSSSCHHHHHHHHHTT-TEECEECGGG--------T-CSEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCC-------CeEEEEECCCCCHHHHHHHHHHC-CEEEEECccC--------C-CCEEEEEcC---CHHHHHHHHHHHHH
Confidence 443 67889998765788999999988 9999998744 3 679999988 88999999999998
Q ss_pred HH
Q 012718 450 TV 451 (458)
Q Consensus 450 ~~ 451 (458)
++
T Consensus 363 ~l 364 (365)
T 3get_A 363 IL 364 (365)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=279.77 Aligned_cols=339 Identities=14% Similarity=0.128 Sum_probs=257.3
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC--CCCCCcEEEeCChhHH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN--ASDSGEIVFTKNATEA 141 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~~v~~t~g~t~a 141 (458)
+++++.|..+... +.++.+.+++.+.+.... +.++....+..+.+.+.+++.+| .+++ +|++|+|+++|
T Consensus 26 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~l~~~la~~l~~~~g~~~~~~-~i~~~~g~~~a 97 (391)
T 3dzz_A 26 KEKELPMWIAEMDFKIAPEIMASMEEKLKVAA-------FGYESVPAEYYKAVADWEEIEHRARPKED-WCVFASGVVPA 97 (391)
T ss_dssp CTTCEECCSSCCSSCCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHSCCCCGG-GEEEESCHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhcCc-------CCCCCCCHHHHHHHHHHHHHHhCCCCCHH-HEEECCCHHHH
Confidence 4578888887655 678999999998875421 11111135666677788888887 4444 99999999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-C--CCCCHHHHHHhhc-CCceEEEEecc
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-D--ESPDLDKLKEMLS-RKTKLVVIHHI 217 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~--~~~d~~~l~~~l~-~~~~~v~~~~~ 217 (458)
+.+++.++ +++||+|+++.++|++ +...++..|++++.++.+. + +.+|+++++++++ .++++|+++++
T Consensus 98 ~~~~~~~l----~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p 169 (391)
T 3dzz_A 98 ISAMVRQF----TSPGDQILVQEPVYNM----FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNP 169 (391)
T ss_dssp HHHHHHHH----SCTTCEEEECSSCCHH----HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESS
T ss_pred HHHHHHHh----CCCCCeEEECCCCcHH----HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECC
Confidence 99999998 6899999999999995 4555677899999999852 2 3479999999998 68999999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCCCCC---Cc--EEEecccCCCCCCc--eeEEEEe
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQGLD---AD--FLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~~~---~d--~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
+||||.++| +++|.++|+++|+++|+|++|+... .+.++.... +| +++.|+||.+|++| +|+++++
T Consensus 170 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~ 249 (391)
T 3dzz_A 170 HNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIP 249 (391)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECC
T ss_pred CCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEEC
Confidence 999999965 8889999999999999999998432 222332222 45 99999999877555 9999997
Q ss_pred -ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 284 -SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 284 -~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
+++++.+...... ....+++.....++..+++.... .++++.++++++++++.+.|++
T Consensus 250 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 308 (391)
T 3dzz_A 250 NPDLRARAEESFFL--------------------AGIGEPNLLAIPAAIAAYEEGHD-WLRELKQVLRDNFAYAREFLAK 308 (391)
T ss_dssp SHHHHHHHHHHHHH--------------------HTCSSCCTTHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--------------------hccCCCCHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 6666655432210 11234555566666666665322 2678889999999999999998
Q ss_pred -CCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 363 -IPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 363 -~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
++++++..+.. +.++++.++ +.+..++.+.|. ++ ||.+++|..|.... ++++|++++ ++++
T Consensus 309 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~-gi~v~~g~~~~~~~------~~~iRis~~--~~~~ 373 (391)
T 3dzz_A 309 EVPEVKVLDSNA------SYLAWVDISALGMNAEDFCKYLREKT-GLIISAGNGYRGNG------HEFVRINLA--CPKE 373 (391)
T ss_dssp HCTTSEECCCCB------SSEEEEECGGGCSCHHHHHHHHHHHH-CEECEESGGGCTTG------GGEEEEECC--SCHH
T ss_pred hCCCcEEeccCc------eEEEEEehhhcCCCHHHHHHHHHHhC-CEEEeCchhhCCCC------CCEEEEEec--CCHH
Confidence 78998875541 446678876 457889999996 66 99999988654321 579999999 6999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 012718 439 DVDEFIHALNETVSFFN 455 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~ 455 (458)
++++++++|.+++++++
T Consensus 374 ~i~~~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 374 LVIDGMQRLKQGVLNLN 390 (391)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=279.38 Aligned_cols=334 Identities=11% Similarity=0.144 Sum_probs=258.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC--CCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN--ASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~~v~~t~g~t~a~ 142 (458)
++++.|..+..+ ++|+.+.+++.+.+.... +.++....+..+++++.+++++| ++++ +|++|+|+|+|+
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~~~~~l~~~l~~~~g~~~~~~-~v~~~~g~~~a~ 103 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEI-------YGYTTRPDSYNESIVNWLYRRHNWKIKSE-WLIYSPGVIPAI 103 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESCHHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCcHH-HeEEcCChHHHH
Confidence 677899888766 678999999998875411 11111236677788899999998 5454 999999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CC--CCCCHHHHHHhhcCCceEEEEeccc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DD--ESPDLDKLKEMLSRKTKLVVIHHIS 218 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~--~~~d~~~l~~~l~~~~~~v~~~~~~ 218 (458)
+.++.++ +++||+|+++.++|++. ...++..|++++.++.+ .+ +.+|++++++.+++ +++|++++++
T Consensus 104 ~~~~~~~----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~ 174 (391)
T 4dq6_A 104 SLLINEL----TKANDKIMIQEPVYSPF----NSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPH 174 (391)
T ss_dssp HHHHHHH----SCTTCEEEECSSCCTHH----HHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSB
T ss_pred HHHHHHh----CCCCCEEEEcCCCCHHH----HHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCC
Confidence 9999988 68999999999999954 55566789999999987 33 34799999999988 9999999999
Q ss_pred CcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCCCCC-----CcEEEecccCCCCCCc--eeEEEEec
Q 012718 219 NMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQGLD-----ADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 219 n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~~~-----~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
||||.++| +++|+++|+++|+++|+|++|+... .+..+.... .++++.|+||.+|++| +|++++++
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 254 (391)
T 4dq6_A 175 NPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPD 254 (391)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCS
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCC
Confidence 99999976 7789999999999999999998632 222333332 3488999999887666 89999887
Q ss_pred -cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-
Q 012718 285 -DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS- 362 (458)
Q Consensus 285 -~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~- 362 (458)
++++.+...... +..++++...+.++.++++...+. ++++.++++++++++.+.|++
T Consensus 255 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~~~ 313 (391)
T 4dq6_A 255 EKDYKLLDDAFTR--------------------IDIKRNNCFSLVATEASYNNGESW-LESFLEYLESNIDFAIKYINEN 313 (391)
T ss_dssp HHHHHHHHHHHHH--------------------TTCCCCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------------------hcCCCCCHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 666555433211 123467777777777777653332 678889999999999999987
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
++++++..+.. +.++++.++ +.+..++.+.|.+++||.+++|..|... .++++|++++ ++++++
T Consensus 314 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~------~~~~iRis~~--~~~~~i 379 (391)
T 4dq6_A 314 MPKLKVRKPEG------TYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIG------GSGYQRINLA--CPRSML 379 (391)
T ss_dssp CTTSEECCCSB------SSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTT------CTTEEEEECC--SCHHHH
T ss_pred CCCCEecCCCc------cEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCC------CCCeEEEEEc--CCHHHH
Confidence 68888876541 346668887 4678899999988779999998755432 2589999999 689999
Q ss_pred HHHHHHHHHHH
Q 012718 441 DEFIHALNETV 451 (458)
Q Consensus 441 ~~l~~~l~~~~ 451 (458)
++++++|.+++
T Consensus 380 ~~~l~~l~~~l 390 (391)
T 4dq6_A 380 EEALIRIKNAI 390 (391)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=276.93 Aligned_cols=335 Identities=16% Similarity=0.168 Sum_probs=254.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCc-EEEeCC
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGE-IVFTKN 137 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~-v~~t~g 137 (458)
+++++|+.+... +.++.+.+++.+.+..... + +. ......++++.+++++ |. +++ + |++|+|
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~----~-y~----~~~g~~~l~~~la~~~~~~~g~~~~~~-~~v~~~~g 95 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDKGLT----H-YG----PNIGLLELREAIAEKLKKQNGIEADPK-TEIMVLLG 95 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHTTCC----S-CC----CTTCCHHHHHHHHHHHHHHHCCCCCTT-TSEEEESS
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhCCCC----C-CC----CCCCcHHHHHHHHHHHHHHhCCCCCCC-CeEEEcCC
Confidence 356899888766 4688899999888764210 0 10 0112346667777776 84 443 7 999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++|+..++.++ +++||+|++++++|++. ...++..|++++.++.++ ++.+|++++++.+++++++|+++
T Consensus 96 ~~~a~~~~~~~~----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~ 167 (389)
T 1gd9_A 96 ANQAFLMGLSAF----LKDGEEVLIPTPAFVSY----APAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIIN 167 (389)
T ss_dssp TTHHHHHHHTTT----CCTTCEEEEEESCCTTH----HHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEE
T ss_pred hHHHHHHHHHHh----CCCCCEEEEcCCCchhH----HHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEE
Confidence 999999999887 67899999999999965 444566799999999875 35689999999998889999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCCC----CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQG----LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+++||||.++| +++|+++|+++|+++|+|++|+.+.. +.++.. .+.|++++|+||.+|++| +|++++
T Consensus 168 ~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 247 (389)
T 1gd9_A 168 SPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA 247 (389)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEEC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEE
Confidence 99999999996 88999999999999999999996543 122222 357899999999998777 799999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHh
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-IGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~-~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
++++++.+.....++ ..+.+.....++..+++.... ..++++.++++++++++.+.|+
T Consensus 248 ~~~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 306 (389)
T 1gd9_A 248 PSWIIERMVKFQMYN---------------------ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLN 306 (389)
T ss_dssp CHHHHHHHHHHHTTT---------------------TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhh---------------------ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 988776665332211 134555566666666664322 1367888999999999999999
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
++ ++++..+. .+.++++.++ +.+..++.+.|. ++ ||.+.+|..|... .++++|++++ .+++
T Consensus 307 ~~-g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~-gi~v~~g~~~~~~------~~~~iRi~~~--~~~~ 370 (389)
T 1gd9_A 307 EM-GLPTVKPK------GAFYIFPRIRDTGLTSKKFSELMLKEA-RVAVVPGSAFGKA------GEGYVRISYA--TAYE 370 (389)
T ss_dssp HT-TCCCCCCC------BTTEECCBCGGGTCCHHHHHHHHHHHT-CEECEEGGGGCGG------GTTBEEEECC--SCHH
T ss_pred Hc-CCeecCCC------eeeEEEEeccCCCCCHHHHHHHHHHhC-CEEEeCchhhCCC------CCCeEEEEec--CCHH
Confidence 87 77665432 1446777876 467788999997 66 9999998755321 2679999998 4899
Q ss_pred HHHHHHHHHHHHHHhhh
Q 012718 439 DVDEFIHALNETVSFFN 455 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~ 455 (458)
++++++++|.+++++.+
T Consensus 371 ~i~~~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 371 KLEEAMDRMERVLKERK 387 (389)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998754
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=279.80 Aligned_cols=336 Identities=16% Similarity=0.189 Sum_probs=259.2
Q ss_pred CCeEEecCCCC-CC-CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAAT-SQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
++++.|+.+.. +. +++.+.+++.+.+...... ...+....+..+..+++++.+++++|.+ ++++|+|+++|+.
T Consensus 43 ~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~g~~~~~~~l~~~la~~~g~~---~v~~~~ggt~a~~ 117 (398)
T 3a2b_A 43 RRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTG--CAGSRFLNGTLDIHVELEEKLSAYVGKE---AAILFSTGFQSNL 117 (398)
T ss_dssp EEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSC--CCSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHH
T ss_pred ceEEEeecccccCCCCCHHHHHHHHHHHHHcCCC--CCCcCcccCCcHHHHHHHHHHHHHhCCC---cEEEECCHHHHHH
Confidence 55677877765 53 7889999999988664211 1111111223466778999999999974 8999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC----CceEEEEecccC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHISN 219 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n 219 (458)
.++.++ +++||.|+++.++|.+. ...++..|++++.++. +|++++++.+++ ++++|++++++|
T Consensus 118 ~~~~~~----~~~gd~V~~~~p~~~~~----~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~n 184 (398)
T 3a2b_A 118 GPLSCL----MGRNDYILLDERDHASI----IDGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFS 184 (398)
T ss_dssp HHHHHS----SCTTCEEEEETTCCHHH----HHHHHHSSSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCT
T ss_pred HHHHHH----hCCCCEEEECCccCHHH----HHHHHHcCCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCC
Confidence 999988 68999999999999955 4455667999999986 389999999876 789999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcc---cCCC-C--CC--CCcEEEecccCCCCCCceeEEEEeccccccCC
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM---VVDV-Q--GL--DADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~-~--~~--~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~ 291 (458)
|||.+.|+++|.++|+++|+++|+|++|+.+.. ...+ . .. ++|++++|+||++||.| |++++++++++.+.
T Consensus 185 ptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~ 263 (398)
T 3a2b_A 185 MEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG-GFVAGDADVIDFLK 263 (398)
T ss_dssp TTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC-EEEEECHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC-cEEEeCHHHHHHHH
Confidence 999999999999999999999999999986643 1121 1 11 26999999999999888 99999988776654
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
.....+ ...++++..+.+++..+++.+.. ++++.++++++++++.+.|+++ ++++..+
T Consensus 264 ~~~~~~-------------------~~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 321 (398)
T 3a2b_A 264 HNARSV-------------------MFSASMTPASVASTLKALEIIQN--EPEHIEKLWKNTDYAKAQLLDH-GFDLGAT 321 (398)
T ss_dssp HHCHHH-------------------HSSBCCCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHT-TCCBCSC
T ss_pred Hhcccc-------------------eecCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHhc-CCCcCCC
Confidence 321100 11345666666666677776543 4678889999999999999887 7766433
Q ss_pred CCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
. ++++++.++. .+..++.+.|.++ ||.++++..|..+. ..+++|++++.+++++|+++++++|+++
T Consensus 322 ~-------g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~-----~~~~iRis~~~~~~~e~i~~~~~~l~~~ 388 (398)
T 3a2b_A 322 E-------SPILPIFIRSNEKTFWVTKMLQDD-GVFVNPVVSPAVPA-----EESLIRFSLMATHTYDQIDEAIEKMVKV 388 (398)
T ss_dssp C-------SSEEEEECCCHHHHHHHHHHHHHT-TEECEEECTTTSCG-----GGCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred C-------CCEEEEEcCCHHHHHHHHHHHHHC-CcEEEeeCCCCCCC-----CCceEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 6788998863 3467899999988 99999987653221 1578999999888999999999999999
Q ss_pred HHhhh
Q 012718 451 VSFFN 455 (458)
Q Consensus 451 ~~~~~ 455 (458)
++++.
T Consensus 389 l~~~~ 393 (398)
T 3a2b_A 389 FKQAE 393 (398)
T ss_dssp HHHCC
T ss_pred HHHhC
Confidence 88653
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=279.53 Aligned_cols=352 Identities=11% Similarity=0.055 Sum_probs=260.2
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEe
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFT 135 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t 135 (458)
++++++|+.+... ++++.+.+++.+.+.... .++ .....+++|+.++++++ ++++ +|++|
T Consensus 43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~----------~~~g~~~lr~~la~~~~~~~g~~~~~~-~i~~t 111 (437)
T 3g0t_A 43 GTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYP----------NLDGLPELKQEASRFAKLFVNIDIPAR-ACVPT 111 (437)
T ss_dssp TCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCC----------CTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE
T ss_pred CCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCC----------CCCChHHHHHHHHHHHHHhhCCCCCcc-cEEEe
Confidence 4678999988766 568899999998887411 111 11123467777777776 3444 99999
Q ss_pred CChhHHHHHHHHHcCCCCC--CCCC--EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhh-cCCc
Q 012718 136 KNATEAINLVAYSWGLSNL--KSGD--EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEML-SRKT 209 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~~--~~g~--~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l-~~~~ 209 (458)
+|+|+++.+++.++ . ++|| +|+++.++|++ +...++..|++++.++++++ +.+|++++++++ +.++
T Consensus 112 ~g~t~al~~~~~~l----~~~~~gd~~~Vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 183 (437)
T 3g0t_A 112 VGSMQGCFVSFLVA----NRTHKNREYGTLFIDPGFNL----NKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQF 183 (437)
T ss_dssp SHHHHHHHHHHHHH----TTSCTTCSCCEEEEESCCHH----HHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHH----hcCCCCCccEEEEeCCCcHh----HHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCc
Confidence 99999999999988 5 8999 99999999995 45556677999999998744 468999999999 6789
Q ss_pred eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cC--------CCCC-CCCcEEEecccCCCC
Q 012718 210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VV--------DVQG-LDADFLVASSHKMCG 273 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~--------~~~~-~~~d~~~~s~~K~~g 273 (458)
++|++++++||||.++| +++|+++|+++|+++|+|++|+.... ++ .+.. .+.+++++|+||.+|
T Consensus 184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 263 (437)
T 3g0t_A 184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFS 263 (437)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTS
T ss_pred eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCC
Confidence 99999999999999998 67789999999999999999985322 21 2222 567799999999988
Q ss_pred CCc--eeEEEEeccccc-cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHH
Q 012718 274 PTG--IGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI--GMQKIHAY 348 (458)
Q Consensus 274 p~g--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~--g~~~~~~~ 348 (458)
++| +|++++++++++ .+..+..+++..... ..+..........+++.....++..+++....+ .+++++++
T Consensus 264 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 339 (437)
T 3g0t_A 264 YAGQRIGVLMISGKLYEREYPDLEESFGRLRFG----EALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIE 339 (437)
T ss_dssp CGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHH----HHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred CccceeEEEEECHHHhhhhhhcccccccccchh----HHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHH
Confidence 767 999999988776 521111000000000 000000001113466776777777777665432 17889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEe------CCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcC
Q 012718 349 EMELAKYLYENLLSIPNIRIY------GPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLG 422 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g 422 (458)
++++++++.+.|+++ ++++. .+.. .+.++++.+++.+..++.+.|.++ ||.+.++..|...
T Consensus 340 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~-gi~v~~~~~~~~~------ 406 (437)
T 3g0t_A 340 YGRKARIMKKMFLDN-GFNIVYDKDGNEPLA-----DGFYFTVGYKGMDSSKLIEKFVRY-GMCAITLKTTGSK------ 406 (437)
T ss_dssp HHHHHHHHHHHHHTT-TEEESSCEETTEECC-----SSSEEEEEETTCCHHHHHHHHHHT-TEECEESTTTTCC------
T ss_pred HHHHHHHHHHHHHHc-CCEEeccccCCCCCc-----eeEEEEEecCCCCHHHHHHHHHHc-CeEEeeccccCCC------
Confidence 999999999999998 88887 2311 266889999877889999999988 9999998765321
Q ss_pred CCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 423 VNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 423 ~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.++++|+|++. .+.+|+++++++|.+++++
T Consensus 407 ~~~~iRis~~~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 407 RNEAMRICTSL-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CTTCEEEECSS-SCGGGHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 13789999994 5999999999999998764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=274.58 Aligned_cols=338 Identities=18% Similarity=0.170 Sum_probs=261.8
Q ss_pred CCeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
..++.|..+.. + ..++.+.+++.+.+..+... .+.+....+..+..+++++.+++++|.+ +++++++|++|+.
T Consensus 64 ~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~G~~~~~~~l~~~la~~~g~~---~~i~~~sGs~a~~ 138 (427)
T 2w8t_A 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSG--TCGSRMLNGTFHDHMEVEQALRDFYGTT---GAIVFSTGYMANL 138 (427)
T ss_dssp EEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSC--CCSCTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHH
T ss_pred ceEEEEECcccccCCCCHHHHHHHHHHHHHhCCC--CcccccccCCcHHHHHHHHHHHHHhCCC---ceEEecCcHHHHH
Confidence 45667766653 4 47788999999988764321 1111112223466778999999999975 6677788888999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC----CceEEEEecccC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR----KTKLVVIHHISN 219 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n 219 (458)
.++.++ +++||.|+++.+.|.+.. ..++..|++++.++. .|+++|++.+++ ++++|++++++|
T Consensus 139 ~al~~l----~~~gd~vl~~~~~h~~~~----~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n 205 (427)
T 2w8t_A 139 GIISTL----AGKGEYVILDADSHASIY----DGCQQGNAEIVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYS 205 (427)
T ss_dssp HHHHHH----SCTTCEEEEETTCCHHHH----HHHHHSCSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEET
T ss_pred HHHHHh----cCCCCEEEECCcccHHHH----HHHHHcCCeeEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCC
Confidence 998887 689999999999999654 334566999998874 489999999876 789999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCccc---------CCCCCCCCcEEEecccCCCCCCceeEEEEeccccccC
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAM 290 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l 290 (458)
|+|.+.|+++|.++|+++|+++|+|++|+.+... +++. .++|++++|+||++|+.| |++++++++++.+
T Consensus 206 ~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~g-G~v~~~~~l~~~l 283 (427)
T 2w8t_A 206 MLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVG-GFVVSNHPKFEAV 283 (427)
T ss_dssp TTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCC-EEEEECCTTGGGG
T ss_pred CCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCC-CEEEeCHHHHHHH
Confidence 9999999999999999999999999999977653 3332 357999999999889877 9999999887776
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYG 370 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 370 (458)
......+ ...++.+..+++++.++++.+.. ++++.++++++++++.+.|+++ ++++..
T Consensus 284 ~~~~~~~-------------------~~~~~~~~~~~aa~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 341 (427)
T 2w8t_A 284 RLACRPY-------------------IFTASLPPSVVATATTSIRKLMT--AHEKRERLWSNARALHGGLKAM-GFRLGT 341 (427)
T ss_dssp GGTCHHH-------------------HSSCCCCHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHH-TCEESC
T ss_pred HHhcccc-------------------cccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCcccC
Confidence 5431100 01346777777777788887653 5788899999999999999887 888763
Q ss_pred CCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+.. .++++++.+++ .+..++.+.|.++ ||.+.++..+..+ ...+++|++++.+++++|+++++++|++
T Consensus 342 ~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~-----~~~~~lRi~~~~~~t~e~i~~~~~~l~~ 410 (427)
T 2w8t_A 342 ETC-----DSAIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATP-----AGTFLLRCSICAEHTPAQIQTVLGMFQA 410 (427)
T ss_dssp SSC-----CSSEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSC-----TTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCC-----CCCEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCC-----CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 321 26788998874 3466889999988 9999987654322 1146899999998999999999999999
Q ss_pred HHHhhhc
Q 012718 450 TVSFFNV 456 (458)
Q Consensus 450 ~~~~~~~ 456 (458)
+++++.+
T Consensus 411 ~l~~~~~ 417 (427)
T 2w8t_A 411 AGRAVGV 417 (427)
T ss_dssp HHHHHTC
T ss_pred HHHHhCc
Confidence 9987654
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=275.43 Aligned_cols=330 Identities=16% Similarity=0.181 Sum_probs=247.4
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCChh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~v~~t~g~t 139 (458)
++.+.|+.+... +.|+.+.+++.+.+.... . .+. ......++|+++++++ |.+ ..++|++|+|++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y~----~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~ 101 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALAQGK-T----KYA----PPAGIPELREALAEKFRRENGLSVTPEETIVTVGGS 101 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-C----SCC----CTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcCC-C----CCC----CCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChH
Confidence 567899888765 567888888888775411 1 010 0112345667777666 432 124899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEecc
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+|+.+++.++ +++||+|+++.|+|+ .+...++..|++++.+++++ ++.+|++++++++++++++|+++++
T Consensus 102 ~al~~~~~~l----~~~gd~Vlv~~p~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p 173 (385)
T 1b5p_A 102 QALFNLFQAI----LDPGDEVIVLSPYWV----SYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSP 173 (385)
T ss_dssp HHHHHHHHHH----CCTTCEEEEEESCCT----HHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESS
T ss_pred HHHHHHHHHh----cCCCCEEEEcCCCch----hHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCC
Confidence 9999999998 689999999999998 45666778899999999975 4578999999999888999999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCCC--CCcEEEecccCCCCCCc--eeEEEEecccc
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQGL--DADFLVASSHKMCGPTG--IGFLFGKSDLL 287 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~~--~~d~~~~s~~K~~gp~g--~G~l~~~~~~~ 287 (458)
+||||.++| +++|+++|+++|++||+|++|+.... ..++..+ +.++++.|+||.+|++| +|+++++++++
T Consensus 174 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~ 253 (385)
T 1b5p_A 174 NNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVI 253 (385)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHH
Confidence 999999998 88999999999999999999985332 1122222 67899999999999878 99999988776
Q ss_pred ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY---LSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
+.+......+ ..+++.....++..+++. ... .+++.+++++++++++.+.|+++
T Consensus 254 ~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~- 310 (385)
T 1b5p_A 254 KAMASVSRQS---------------------TTSPDTIAQWATLEALTNQEASRA-FVEMAREAYRRRRDLLLEGLTAL- 310 (385)
T ss_dssp HHHHHHHHTT---------------------TCSCCHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhc---------------------cCCCCHHHHHHHHHHHhCCCcchH-HHHHHHHHHHHHHHHHHHHHHHC-
Confidence 6654332111 123444455555556643 222 26778889999999999999887
Q ss_pred CEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
++++..+. .+.++++.++ +.+..++.+.|.++ ||.+++|..| +.++++|||++ ++++++++
T Consensus 311 g~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~l~~~-gv~v~~g~~f--------~~~~~iRis~~--~~~~~i~~ 373 (385)
T 1b5p_A 311 GLKAVRPS------GAFYVLMDTSPIAPDEVRAAERLLEA-GVAVVPGTDF--------AAFGHVRLSYA--TSEENLRK 373 (385)
T ss_dssp TCCBCCCS------BTTEEEEECTTTCSSHHHHHHHHHHT-TEECEESGGG--------TCTTEEEEECC--SCHHHHHH
T ss_pred CCeecCCC------eeEEEEEecCCCCCCHHHHHHHHHHC-CeEEeccccc--------CCCCeEEEEec--CCHHHHHH
Confidence 77765443 1447777775 45778899999877 9999998754 22679999998 79999999
Q ss_pred HHHHHHHHHH
Q 012718 443 FIHALNETVS 452 (458)
Q Consensus 443 l~~~l~~~~~ 452 (458)
++++|.++++
T Consensus 374 ~l~~l~~~l~ 383 (385)
T 1b5p_A 374 ALERFARVLG 383 (385)
T ss_dssp HHHHGGGGC-
T ss_pred HHHHHHHHHh
Confidence 9999887764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=275.43 Aligned_cols=325 Identities=16% Similarity=0.168 Sum_probs=249.2
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
++++++|+.+..+ ..++.+.+++.+.+.... . . +. ......++++.++++++ .++ ++|++|+|
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~--~--y~----~~~~~~~l~~~la~~~~~~~g~~~~~-~~v~~~~g 97 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGK-T--H--YT----DSRGILELREKISELYKDKYKADIIP-DNIIITGG 97 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHTTC-C--S--CC----CTTCCHHHHHHHHHHHHHHSSCCCCG-GGEEEESS
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHcCc-c--C--CC----CCCCCHHHHHHHHHHHHHHhCCCCCh-hhEEECCC
Confidence 3678999988776 358889999988876421 0 0 00 01123467777777764 344 48999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+++|+..++.++ +++||+|++++++|++. ...++..|++++.++ +|++++++.+++++++|+++++
T Consensus 98 ~~~a~~~~~~~~----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~v~------~d~~~l~~~l~~~~~~v~~~~p 163 (370)
T 2z61_A 98 SSLGLFFALSSI----IDDGDEVLIQNPCYPCY----KNFIRFLGAKPVFCD------FTVESLEEALSDKTKAIIINSP 163 (370)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEESSCCTHH----HHHHHHTTCEEEEEC------SSHHHHHHHCCSSEEEEEEESS
T ss_pred hHHHHHHHHHHh----cCCCCEEEEeCCCchhH----HHHHHHcCCEEEEeC------CCHHHHHHhcccCceEEEEcCC
Confidence 999999999988 68999999999999954 445667799999988 5899999999888999999999
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc---cCCCC----CCCCcEEEecccCCCCCCc--eeEEEEeccccc
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQ----GLDADFLVASSHKMCGPTG--IGFLFGKSDLLS 288 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~----~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~ 288 (458)
+||||.++|++ |.++|+++|+++|+|++|+.+.. +.++. ..+.|++++|+||.+|++| +|++++++++++
T Consensus 164 ~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~ 242 (370)
T 2z61_A 164 SNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIE 242 (370)
T ss_dssp CTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHH
T ss_pred CCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHH
Confidence 99999999999 99999999999999999996543 22222 2367999999999998777 999999998776
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+.....++ .++++.....++..+++.+....++++.++++++++++.+.|+++ ++++
T Consensus 243 ~~~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 300 (370)
T 2z61_A 243 AILKLQQNL---------------------FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEV 300 (370)
T ss_dssp HHHHHHHHH---------------------TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBC
T ss_pred HHHHHHhhc---------------------ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 665432211 235666666666666654223346788899999999999999887 7766
Q ss_pred eCCCCCCcCccccEEEEEeCCCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVENIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
..+. .+.++++.+++ +..++.+.|. ++ ||.+++|..|... .++++|++++ ++++++++++++|
T Consensus 301 ~~~~------~~~~~~~~~~~-~~~~~~~~l~~~~-gi~v~~g~~f~~~------~~~~~Ri~~~--~~~~~i~~~~~~l 364 (370)
T 2z61_A 301 NNPI------GAYYVFPNIGE-DGREFAYKLLKEK-FVALTPGIGFGSK------GKNYIRISYA--NSYENIKEGLERI 364 (370)
T ss_dssp CCCC------BTTEECCBCSS-CHHHHHHHHHHHH-CEECEEGGGGCGG------GSSBEEEECC--SCHHHHHHHHHHH
T ss_pred cCCC------cceEEEEecCC-CHHHHHHHHHHhC-CEEEeCchhhCCC------CCCEEEEEEe--CCHHHHHHHHHHH
Confidence 5432 14567778876 6788999987 56 9999998755321 2679999999 6999999999999
Q ss_pred HHHHH
Q 012718 448 NETVS 452 (458)
Q Consensus 448 ~~~~~ 452 (458)
.++++
T Consensus 365 ~~~l~ 369 (370)
T 2z61_A 365 KEFLN 369 (370)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98875
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=282.13 Aligned_cols=341 Identities=14% Similarity=0.143 Sum_probs=257.7
Q ss_pred CeEEecCCCCC--CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCChhHHH
Q 012718 67 KLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNATEAI 142 (458)
Q Consensus 67 ~~i~l~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~~v~~t~g~t~a~ 142 (458)
.+++|..+... ++++.+.+++.+.+....... +.......+..+.+.+.+++++|.+ +.++|++|+|+++|+
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~----y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~ 115 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQA----YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL 115 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHH----SCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCC----cCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence 57889876554 678889999999887532110 0011123566777888888988875 224899999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC------CCCCCCCHHHHHHhhcCCceEEEEec
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL------NDDESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~------~~~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
..++.++ +++||+|+++.++|++ +...++..|++++.++. +.++.+|++++++.+++++++|++++
T Consensus 116 ~~~~~~l----~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 187 (407)
T 3nra_A 116 FLAVAAT----VARGDKVAIVQPDYFA----NRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSN 187 (407)
T ss_dssp HHHHHTT----CCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHh----CCCCCEEEEcCCcccc----hHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcC
Confidence 9999987 7899999999999995 45666778999999998 35678899999999998999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCC-----CCCCCcEEEecccCCCCCCc--eeEEEE
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDV-----QGLDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~-----~~~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
++||||.++| +++|+++|++||+++|+|++|+.+.. ...+ ...+.++++.|+||.+|+.| +|+++.
T Consensus 188 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (407)
T 3nra_A 188 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG 267 (407)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEE
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEc
Confidence 9999999999 89999999999999999999985322 1111 22446799999999988666 899999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+......+ ..+++.....++..+++.. ...+++..++.+++++++.+.|++
T Consensus 268 ~~~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 325 (407)
T 3nra_A 268 SRAIIARMEKLQAIV---------------------SLRAAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLRG 325 (407)
T ss_dssp CHHHHHHHHHHHHHH---------------------TSSSCHHHHGGGGGTTCCC-TTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhh---------------------ccCCChHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhc
Confidence 888776665332211 1233444444443333311 112567788889999999999999
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
++++++..+. .+.++++.++. .+..++.+.|.+++||.+++|..|.+. ..+++|++++ .+.+||
T Consensus 326 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~------~~~~iRis~~--~~~~~i 391 (407)
T 3nra_A 326 CEGVFARTPQ------AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH------TADSVRLNFS--QDHEAA 391 (407)
T ss_dssp STTCBCCCCS------BSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTT------CTTBEEEECC--SCHHHH
T ss_pred CCCceeccCC------eeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCC------CCCEEEEEeC--CCHHHH
Confidence 8888775543 14577777763 567889999875449999998866432 2689999998 499999
Q ss_pred HHHHHHHHHHHHhhh
Q 012718 441 DEFIHALNETVSFFN 455 (458)
Q Consensus 441 ~~l~~~l~~~~~~~~ 455 (458)
++++++|.+++++++
T Consensus 392 ~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 392 VAAARRIVTLVERYR 406 (407)
T ss_dssp HHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998765
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-34 Score=275.72 Aligned_cols=333 Identities=17% Similarity=0.174 Sum_probs=254.6
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
++++|+.+... +.++.+.+++.+.+... +.+ + ......++++.++++++++++ +|++|+|+++|+.++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y-~-------~~~~~~~l~~~la~~~~~~~~-~v~~~~g~~~a~~~~ 94 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQ--DQY-A-------PPAGLPALREALAEEFAVEPE-SVVVTSGATEALYVL 94 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTTS--CSC-C-------CTTCCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHh--cCC-C-------CCCCCHHHHHHHHHhcCCChh-hEEEcCChHHHHHHH
Confidence 46788877655 56788999998876541 110 1 112345899999999999865 899999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC---CCCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---DDESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~---~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
+.++ +++||+|++++++|++. ...++..|++++.++.+ +++.+|++++++.+++++++|++++++||||
T Consensus 95 ~~~~----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG 166 (381)
T 1v2d_A 95 LQSL----VGPGDEVVVLEPFFDVY----LPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTG 166 (381)
T ss_dssp HHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTC
T ss_pred HHHh----CCCCCEEEEcCCCchhH----HHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCC
Confidence 9988 68999999999999964 44567789999999986 4577899999999988999999999999999
Q ss_pred cccc---HHHHHHHHHhcCcEEEEeccccCCc---ccCCCC--CCCCcEEEecccCCCCCCc--eeEEEEeccccccCCC
Q 012718 223 SILP---IEEIVHWSHDVGAKVLVDACQSVPH---MVVDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPP 292 (458)
Q Consensus 223 ~~~~---l~~i~~l~~~~~~~vivD~a~~~g~---~~~~~~--~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~ 292 (458)
.++| +++|.++|+++|+++|+|++|+... .+.++. ..+.|++++|+||.+|++| +|++++++++++.+..
T Consensus 167 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 246 (381)
T 1v2d_A 167 LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAG 246 (381)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHH
Confidence 9998 7899999999999999999998542 222222 3468999999999888777 9999999887766543
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
... +...+.+.....++..+++... ...++++.++++++++++.+.|++. ++++..+
T Consensus 247 ~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 304 (381)
T 1v2d_A 247 MRQ---------------------WTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVP 304 (381)
T ss_dssp HHH---------------------HHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECC
T ss_pred HHh---------------------hcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCC
Confidence 211 1123556666677777777542 3347888999999999999999886 8877654
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
. .+.++++.+++.+ +.+.+.++ ||.+++|..|.... ..++++||+++. +.+|+++++++|.+++
T Consensus 305 ~------~~~~~~~~~~~~~---~~~~l~~~-gi~v~~g~~~~~~~----~~~~~iRi~~~~--~~~~i~~~~~~l~~~l 368 (381)
T 1v2d_A 305 E------GTYFLMAELPGWD---AFRLVEEA-RVALIPASAFYLED----PPKDLFRFAFCK--TEEELHLALERLGRVV 368 (381)
T ss_dssp S------BSSEEEEECTTCC---HHHHHHHT-CEECEEGGGGCSSS----CCTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred C------cceEEEEecChHh---HHHHHHhC-CEEEecchHhCCCC----CCCCEEEEEeCC--CHHHHHHHHHHHHHHH
Confidence 3 1458888887542 66667777 99999887553210 125799999985 8999999999999998
Q ss_pred Hhhhc
Q 012718 452 SFFNV 456 (458)
Q Consensus 452 ~~~~~ 456 (458)
++.++
T Consensus 369 ~~~r~ 373 (381)
T 1v2d_A 369 NSPRE 373 (381)
T ss_dssp -----
T ss_pred hhccc
Confidence 87654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=267.87 Aligned_cols=322 Identities=14% Similarity=0.214 Sum_probs=252.8
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
++++++|+.+... ++|+.+.+++.+.+.....++.. ..+++++.++++++++++ +|++|+|+|+|++
T Consensus 25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~-~i~~~~g~t~al~ 92 (361)
T 3ftb_A 25 GRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDI-GIVLGNGASEIIE 92 (361)
T ss_dssp ---CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSC-EEEEESSHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcc-eEEEcCCHHHHHH
Confidence 4678999888555 57899999999988764333221 235899999999998775 9999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
+++.++ |+|+++.++|++ +...++..|++++.++.++++.++++++++.+++ ++++++++++||||.
T Consensus 93 ~~~~~~--------d~vi~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~ 159 (361)
T 3ftb_A 93 LSISLF--------EKILIIVPSYAE----YEINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGG 159 (361)
T ss_dssp HHHTTC--------SEEEEEESCCTH----HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTB
T ss_pred HHHHHc--------CcEEEecCChHH----HHHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCC
Confidence 998743 899999999995 4556677799999999998878899999999988 999999999999999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEeccccCCccc-----CC-CCCCCCcEEEecccCCCCCCc--eeEEE-EeccccccCC
Q 012718 224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----VD-VQGLDADFLVASSHKMCGPTG--IGFLF-GKSDLLSAMP 291 (458)
Q Consensus 224 ~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-----~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~-~~~~~~~~l~ 291 (458)
++| +++|+++|+++|+++|+|++|+..... .. ....+.++++.|+||.+|++| +|+++ .++++++.+.
T Consensus 160 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~ 239 (361)
T 3ftb_A 160 LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIK 239 (361)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHH
Confidence 998 667888888999999999999843321 11 223345688889999888666 79988 6766665554
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR-IYG 370 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~ 370 (458)
.... ..+++.....++.++++.. ..+++.+++.+++++++.+.|+++++++ +..
T Consensus 240 ~~~~-----------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 294 (361)
T 3ftb_A 240 AKQN-----------------------PWNINCFAEMAAINCLKDT--NYIEESLLWIKKERKRFIEELNKIGFIKRVFS 294 (361)
T ss_dssp TTSC-----------------------TTCSCHHHHHHHHHTSSCH--HHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEC
T ss_pred hhCC-----------------------CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCCCCceecC
Confidence 3211 2356777777777776642 2367888999999999999999998988 665
Q ss_pred CCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
+. ++++++.+++.+..++.+.|.++ ||.+++|..|... .++++|++++ +.+|++++++.|+++
T Consensus 295 ~~-------~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~~~~~------~~~~iRis~~---~~~~~~~l~~~l~~~ 357 (361)
T 3ftb_A 295 PH-------ANFVLCRLENISGEKLYDSLLKE-DIVIRRCCNFIGL------DDSFVRFAIK---DEKKNTKFLRALKGV 357 (361)
T ss_dssp CS-------SSEEEEEESSSCHHHHHHHHHTT-TEECEECTTSTTC------CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CC-------CeEEEEEcCCCCHHHHHHHHHHC-CeEEeeCccCCCC------CCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 43 67888999877788999999998 9999998866321 2679999988 788999999999988
Q ss_pred HHh
Q 012718 451 VSF 453 (458)
Q Consensus 451 ~~~ 453 (458)
.+.
T Consensus 358 ~~~ 360 (361)
T 3ftb_A 358 ENN 360 (361)
T ss_dssp HHT
T ss_pred Hhc
Confidence 754
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=275.30 Aligned_cols=335 Identities=18% Similarity=0.184 Sum_probs=247.0
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNA 138 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~v~~t~g~ 138 (458)
++++++|+.+... +.|+.+.+++.+.+..... .+.. .....++++.+++++ |.+ ..++|++|+|+
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~~----~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 99 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKT-----RYGP----AAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG 99 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCC-----SCCC----TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCC-----CCCC----CCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCH
Confidence 3667899888765 4678889998888754210 0110 111234555555554 543 22489999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
++|+..++.++ +++||+|++++++|++. ...++..|++++.++.++ ++.+|++++++.+++++++|++++
T Consensus 100 ~~a~~~~~~~~----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 171 (388)
T 1j32_A 100 KQSIFNLMLAM----IEPGDEVIIPAPFWVSY----PEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNT 171 (388)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEESSCCTHH----HHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHHHHHh----cCCCCEEEEcCCCChhH----HHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeC
Confidence 99999999988 68999999999999954 555677899999999875 467899999999998999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc----CCCCC-----CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV----VDVQG-----LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~----~~~~~-----~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
++||||.++| +++|+++|+++|+++|+|++|+..... ..+.. .+.|+++.|+||++|++| +|++++
T Consensus 172 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~ 251 (388)
T 1j32_A 172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG 251 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEe
Confidence 9999999987 889999999999999999999854321 11111 347899999999988888 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+.....++ ..+++.....++..+++.. ...++++.++++++++++.+.|++
T Consensus 252 ~~~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 309 (388)
T 1j32_A 252 PVPLVKAATKIQGHS---------------------TSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNA 309 (388)
T ss_dssp CHHHHHHHHHHHHTT---------------------TCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhc---------------------ccCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 988776655332211 1123333344444444421 112677888999999999999999
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
++++++..+. .+.++++.++ +.+..++.+.|.+++||.+.+|..| +.++++|++++ ++++++
T Consensus 310 ~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--------~~~~~iRis~~--~~~~~i 373 (388)
T 1j32_A 310 MPGLECPKPD------GAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAF--------GADDCIRLSYA--TDLDTI 373 (388)
T ss_dssp CTTCBCCCCC------BTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGG--------TCTTBEEEECC--SCHHHH
T ss_pred CCCCcccCCC------eeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhh--------CCCCcEEEEec--CCHHHH
Confidence 8888765443 1345666665 4567889998876339999988643 23578999998 799999
Q ss_pred HHHHHHHHHHHHhh
Q 012718 441 DEFIHALNETVSFF 454 (458)
Q Consensus 441 ~~l~~~l~~~~~~~ 454 (458)
++++++|.++++++
T Consensus 374 ~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 374 KRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=269.51 Aligned_cols=321 Identities=14% Similarity=0.130 Sum_probs=249.5
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHH----hccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEA----YNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++++++|+.+... ++++.+.+++.+.+.. ...++.. ..+++++++++++|++++ +|++|+|++
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~g~~~~-~i~~t~g~~ 92 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA-----------SSQKLREVAGELYGFDPS-WIIMANGSD 92 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS-----------SCHHHHHHHHHHHTCCGG-GEEEESSHH
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC-----------chHHHHHHHHHHhCcCcc-eEEEcCCHH
Confidence 4678999988766 6789999999988765 2222211 124889999999998765 999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
+|+++++.++ +++||+|+++.++|++ +...++..|++++.++.++++.+ +++++.+ +++++++++++|
T Consensus 93 ~al~~~~~~l----~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~--~~l~~~~--~~~~v~i~~p~n 160 (360)
T 3hdo_A 93 EVLNNLIRAF----AAEGEEIGYVHPSYSY----YGTLAEVQGARVRTFGLTGDFRI--AGFPERY--EGKVFFLTTPNA 160 (360)
T ss_dssp HHHHHHHHHH----CCTTCEEEEESSSCTH----HHHHHHHHTCEEEEECBCTTSSB--TTCCSSB--CSSEEEEESSCT
T ss_pred HHHHHHHHHH----hCCCCEEEEcCCChHH----HHHHHHHCCCEEEEeeCCCCCCH--HHHHhhc--CCCEEEEeCCCC
Confidence 9999999998 7899999999999995 45566677999999999776554 4443333 457999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCC--cccCC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcc
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVP--HMVVD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g--~~~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~ 294 (458)
|||.++|+++|.++|+++|+++|+|++|+.. ..... ....+.+++++|+||.+|++| +|++++++++++.+....
T Consensus 161 ptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~ 240 (360)
T 3hdo_A 161 PLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIR 240 (360)
T ss_dssp TTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhC
Confidence 9999999999999999999999999999842 11111 122356789999999888666 899999887776654322
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
. ..+.+.....++..+++... .+++.+++++++++++.+.|+++ ++++..+.
T Consensus 241 ~-----------------------~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~-- 292 (360)
T 3hdo_A 241 D-----------------------HYNLDRLAQAACVAALRDQA--YLSECCRRIRETREWFTTELRSI-GYDVIPSQ-- 292 (360)
T ss_dssp C-----------------------SCCSCHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHT-TCEECCCS--
T ss_pred C-----------------------CCCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCC--
Confidence 1 13466666777777776422 26788899999999999999988 88775432
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
++++++.+++.+..++.+.|.++ ||.++++.. .+.++++|++++ +.+|+++++++|+++.+..
T Consensus 293 -----~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~--------~~~~~~iRis~~---~~~e~~~l~~al~~~~~~~ 355 (360)
T 3hdo_A 293 -----GNYLFATPPDRDGKRVYDGLYAR-KVLVRHFSD--------PLLAHGMRISIG---TREEMEQTLAALKEIGEGH 355 (360)
T ss_dssp -----SSEEEEECTTCCHHHHHHHHHHT-TEECBCCCS--------TTTTTSEEEECC---CHHHHHHHHHHHHHHHC--
T ss_pred -----ccEEEEECCCCCHHHHHHHHHHC-CEEEEECCC--------CCCCCEEEEEcC---CHHHHHHHHHHHHHHhccc
Confidence 67888998887889999999988 999988653 123689999988 8999999999999987654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=265.84 Aligned_cols=315 Identities=18% Similarity=0.207 Sum_probs=245.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+++|+|+.+... ++++.+.+++.+.......++ ....+++|+.+++++|++++ +|++|+|+++++.+
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~-~i~~t~G~~~~l~~ 83 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAAAAARINRYP-----------FDAEPRVMRKLAEHFSCPED-NLMLVRGIDECFDR 83 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSCC-----------TTHHHHHHHHHHHHHTSCGG-GEEEESHHHHHHHH
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHHhhhhhccCC-----------CCchHHHHHHHHHHhCcCHH-HEEEeCCHHHHHHH
Confidence 678999999655 678889999888765422221 23466899999999999865 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
++.++ +||+|++++++|++ +...++..|++++.++.++++.+|++++++. .+++++++++++||||.+
T Consensus 84 ~~~~~------~gd~vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~ 151 (337)
T 3p1t_A 84 ISAEF------SSMRFVTAWPGFDG----YRARIAVSGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQA 151 (337)
T ss_dssp HHHHS------TTSEEEEESSSCSH----HHHHHTTSCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCC
T ss_pred HHHhc------CCCeEEEeCCCcHH----HHHHHHHcCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCC
Confidence 99865 79999999999995 4556677899999999988888999999876 467999999999999999
Q ss_pred ccHHHHHHHHHhcCcEEEEeccccC--CcccCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcce
Q 012718 225 LPIEEIVHWSHDVGAKVLVDACQSV--PHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMI 300 (458)
Q Consensus 225 ~~l~~i~~l~~~~~~~vivD~a~~~--g~~~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~ 300 (458)
+|++++.++|+++++ +|+|++|+. +..+......+.+++++|+||.+|++| +|++++++++++.+.....
T Consensus 152 ~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~----- 225 (337)
T 3p1t_A 152 LSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQW----- 225 (337)
T ss_dssp CCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTSC-----
T ss_pred CCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhcC-----
Confidence 999999999999997 556999972 222222333457899999999888666 7999999887766543211
Q ss_pred EeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc
Q 012718 301 SDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA 380 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 380 (458)
.++++...+.++..+++.... +++..+++.++++++.+.|+++ ++++..+. +
T Consensus 226 ------------------~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-------~ 277 (337)
T 3p1t_A 226 ------------------FCNVGTLDLHALEAALDNDRA--REAHIAKTLAQRRRVADALRGL-GYRVASSE-------A 277 (337)
T ss_dssp ------------------TTCSCHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS-------S
T ss_pred ------------------CCCCCHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHHHHHHHC-cCEECCCC-------C
Confidence 235666666666666554222 4566677778889999999887 77664433 6
Q ss_pred cEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 381 ALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 381 ~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
+++++..+ +..++.+.|.++ ||.+++|..| +.++++|+|++ +.+|+++++++|+++.+
T Consensus 278 ~~~~~~~~--~~~~~~~~l~~~-gi~v~~g~~~--------~~~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 278 NFVLVENA--AGERTLRFLRER-GIQVKDAGQF--------GLHHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp SEEEEECT--TTHHHHHHHHHT-TEECEEGGGG--------TCCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred eEEEEEcC--CHHHHHHHHHHC-CeEEEECccC--------CCCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 78888776 356788888888 9999998754 34689999988 78999999999998764
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=272.44 Aligned_cols=331 Identities=15% Similarity=0.142 Sum_probs=250.3
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHh-ccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTK 136 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~ 136 (458)
+++++.|..+... +.++.+.+++.+.+... ..++. .. +++++.++++++ ++++ +|++|+
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----------~~-~~lr~~la~~~~~~~~~~~~~~-~i~~t~ 88 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-----------DG-SLLSQATAEFYADRYGYQARPE-WIFPIP 88 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-----------SS-CCHHHHHHHHHHHHHCCCCCGG-GEEEES
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-----------CC-HHHHHHHHHHHHHHhCCCCCHH-HEEEeC
Confidence 4678899888655 67899999999888652 11110 11 356777777776 5554 999999
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEec
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
|+++|++.++.++ +++||+|+++.++|++. ...++..|++++.++.+++ +|++++++.++++++++++++
T Consensus 89 g~~~a~~~~~~~~----~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~~~~~v~i~~ 158 (377)
T 3fdb_A 89 DVVRGLYIAIDHF----TPAQSKVIVPTPAYPPF----FHLLSATQREGIFIDATGG--INLHDVEKGFQAGARSILLCN 158 (377)
T ss_dssp CHHHHHHHHHHHH----SCTTCCEEEEESCCTHH----HHHHHHHTCCEEEEECTTS--CCHHHHHHHHHTTCCEEEEES
T ss_pred ChHHHHHHHHHHh----cCCCCEEEEcCCCcHhH----HHHHHHcCCEEEEccCCCC--CCHHHHHHHhccCCCEEEEeC
Confidence 9999999999988 68999999999999954 5556677999999999876 899999999999999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCC---CCCcEEEecccCCCCCCc--eeEEEE-
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQG---LDADFLVASSHKMCGPTG--IGFLFG- 282 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~---~~~d~~~~s~~K~~gp~g--~G~l~~- 282 (458)
++||||.++| +++|+++|+++|+++|+|++|+.... +.++.. .+.++++.|+||.+|++| +|++++
T Consensus 159 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 238 (377)
T 3fdb_A 159 PYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFS 238 (377)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeC
Confidence 9999999997 66777889999999999999985221 122222 235689999999888766 898887
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+..... ...++++.....++..+++...+ .++++.++++++++++.+.|++
T Consensus 239 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 296 (377)
T 3fdb_A 239 NPSDAEHWQQLSP---------------------VIKDGASTLGLIAAEAAYRYGTD-FLNQEVAYLKNNHDFLLHEIPK 296 (377)
T ss_dssp SHHHHHHHHHSCH---------------------HHHCCCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---------------------hhcCCCCHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555432211 11235666666666666664322 2678889999999999999988
Q ss_pred -CCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 -IPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
+|++++..+.. +.++++.++.. ...++.+.+.+++||.+++|..|... .++++|++++ .+++++
T Consensus 297 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~------~~~~~Ris~~--~~~e~i 362 (377)
T 3fdb_A 297 RIPGAKITPMQA------TYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGED------GTGFCRLNFA--TSREVL 362 (377)
T ss_dssp HSTTCEECCCSB------CSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGG------GTTEEEEECC--SCHHHH
T ss_pred hCCCceEecCCe------eEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCC------CCCEEEEEeC--CCHHHH
Confidence 78898876541 44667888752 23567777665559999999866543 2689999999 589999
Q ss_pred HHHHHHHHHHHHhh
Q 012718 441 DEFIHALNETVSFF 454 (458)
Q Consensus 441 ~~l~~~l~~~~~~~ 454 (458)
++++++|.++++++
T Consensus 363 ~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 363 EEAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998754
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=276.45 Aligned_cols=335 Identities=16% Similarity=0.173 Sum_probs=251.0
Q ss_pred CCCeEEecCCCC---C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc------CCCCCCcEEE
Q 012718 65 SKKLVYLDNAAT---S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVF 134 (458)
Q Consensus 65 ~~~~i~l~~~~~---~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~v~~ 134 (458)
++++++|+.+.. . +.++.+.+++.+.+..... .+. ......++++.+++++ ++++ ++|++
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~----~~~g~~~l~~~la~~l~~~~g~~~~~-~~v~~ 106 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHN-----YYG----DSEGLPELRKAIVEREKRKNGVDITP-DDVRV 106 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCC-----SCC----CTTCCHHHHHHHHHHHHHHHCCCCCG-GGEEE
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCC-----CCC----CCCCcHHHHHHHHHHHHHhcCCCCCH-HHEEE
Confidence 367899999877 3 5678899999888764210 010 0112335666666666 3444 49999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEE
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLV 212 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v 212 (458)
|+|+++|+.+++.++ +++||+|++++++|++ +...++..|++++.++.++ ++.+|++++++.+++++++|
T Consensus 107 t~g~~~al~~~~~~l----~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v 178 (406)
T 1xi9_A 107 TAAVTEALQLIFGAL----LDPGDEILVPGPSYPP----YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAI 178 (406)
T ss_dssp ESHHHHHHHHHHHHH----CCTTCEEEEEESCCHH----HHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEE
T ss_pred cCChHHHHHHHHHHh----CCCCCEEEEcCCCCcc----HHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEE
Confidence 999999999999988 6799999999999985 4556677899999999874 35679999999999899999
Q ss_pred EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCC--CCC-cEEEecccCCCCCCc--eeEEE
Q 012718 213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG--LDA-DFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 213 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~--~~~-d~~~~s~~K~~gp~g--~G~l~ 281 (458)
++++++||||.++| +++|+++|+++|+++|+|++|+.+.. +..+.. .+. |++++|+||++|++| +|+++
T Consensus 179 ~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 258 (406)
T 1xi9_A 179 AVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMY 258 (406)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEE
T ss_pred EEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEE
Confidence 99999999999988 88999999999999999999986432 112111 345 889999999998777 89999
Q ss_pred --Eec----cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 282 --GKS----DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 282 --~~~----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
.++ ++++.+..... +. ++++.....++.++++...+ .++++.+++++++++
T Consensus 259 ~~~~~~~~~~l~~~l~~~~~---------------------~~-~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~ 315 (406)
T 1xi9_A 259 FVDPENKLSEVREAIDRLAR---------------------IR-LCPNTPAQFAAIAGLTGPMD-YLKEYMKKLKERRDY 315 (406)
T ss_dssp EECTTCTTHHHHHHHHHHHH---------------------HT-CCSCSHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHH
T ss_pred EecCchhHHHHHHHHHHHHH---------------------hh-cCCCHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHH
Confidence 777 66655542211 11 24455555666666642222 267888999999999
Q ss_pred HHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC---CCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEee
Q 012718 356 LYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE---NIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASL 431 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~ 431 (458)
+.+.|++++++++..+. .+.++++.++ +.+..++.+.|. ++ ||.+.+|..|... .++++||++
T Consensus 316 l~~~L~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~-gi~v~~g~~f~~~------~~~~lRis~ 382 (406)
T 1xi9_A 316 IYKRLNEIPGISTTKPQ------GAFYIFPKIEVGPWKNDKEFVLDVLHNA-HVLFVHGSGFGEY------GAGHFRAVF 382 (406)
T ss_dssp HHHHHHTSTTEECCCCC------BSSEECCEECSCSCSSHHHHHHHHHHHH-CEECEEGGGGCGG------GTTBEEEEC
T ss_pred HHHHHHhCCCCeeecCC------eeEEEEEecCccCCCCHHHHHHHHHHhC-CEEEeCchhcCCC------CCCEEEEEe
Confidence 99999998888875443 1345666776 456788998887 66 9999988755321 167999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 432 HFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 432 ~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+ ++++++++++++|.++++++.
T Consensus 383 ~--~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 383 L--PPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHC-
T ss_pred c--CCHHHHHHHHHHHHHHHHHHh
Confidence 8 899999999999999988653
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=277.55 Aligned_cols=327 Identities=17% Similarity=0.176 Sum_probs=247.3
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNA 138 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~v~~t~g~ 138 (458)
++++++|+.+... +.++.+.+++.+.+..... .+. ......++++.+++++ |.+ ..++|++|+|+
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~----~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~ 110 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEV-----KYT----DPRGIYELREGIAKRIGERYKKDISPDQVVVTNGA 110 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCC-----CCC----CTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCC-----CCC----CCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCH
Confidence 4678999988765 5678899998888754210 010 0112346667777776 653 22499999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
|+|+..++.++ +++||+|++++++|++. ...++..|++++.++.++ ++.+|++++++.+++++++|++++
T Consensus 111 t~al~~~~~~l----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 182 (389)
T 1o4s_A 111 KQALFNAFMAL----LDPGDEVIVFSPVWVSY----IPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINS 182 (389)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEES
T ss_pred HHHHHHHHHHh----CCCCCEEEEcCCCchhH----HHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcC
Confidence 99999999988 67899999999999964 445567799999999875 467899999999988999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCC---CCC-CCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVD---VQG-LDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~---~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
++||||.++| +++|+++|+++|+++|+|++|+.+.. +.+ +.. .+.|++++|+||++|++| +|++++++
T Consensus 183 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~ 262 (389)
T 1o4s_A 183 PNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 262 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCH
Confidence 9999999998 88999999999999999999996543 112 221 468999999999988777 89999998
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
++++.+.....++ ..+.+.....++.. .+.. +++++.++++++++++.+.|+++
T Consensus 263 ~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~---~l~~-~~~~~~~~~~~~~~~l~~~L~~~- 316 (389)
T 1o4s_A 263 KVATAVSKIQSHT---------------------TSCINTVAQYAALK---ALEV-DNSYMVQTFKERKNFVVERLKKM- 316 (389)
T ss_dssp HHHHHHHHHHHHH---------------------TCSCCHHHHHHHHH---HTTC-CCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhhhc---------------------ccCCCHHHHHHHHH---HHhc-cHHHHHHHHHHHHHHHHHHHHhc-
Confidence 8776665432211 11233333333333 3333 37888899999999999999887
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEF 443 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l 443 (458)
++++..+. .+.++++.++ .+..++.+.|. ++ ||.+.+|..| +.++++|++++ .++++++++
T Consensus 317 g~~~~~~~------~~~~~~~~~~-~~~~~l~~~l~~~~-gi~v~~g~~f--------~~~~~~Ris~~--~~~~~l~~~ 378 (389)
T 1o4s_A 317 GVKFVEPE------GAFYLFFKVR-GDDVKFCERLLEEK-KVALVPGSAF--------LKPGFVRLSFA--TSIERLTEA 378 (389)
T ss_dssp TCCCCCCS------BSSEEEEECS-SCHHHHHHHHHHHH-CEECEEGGGG--------TCTTEEEEECC--SCHHHHHHH
T ss_pred CCeeecCC------cceEEEEeCC-CCHHHHHHHHHHHC-CEEEeCchhc--------CCCCeEEEEEe--CCHHHHHHH
Confidence 77665432 1457788886 56788999987 66 9999988643 22569999999 599999999
Q ss_pred HHHHHHHHH
Q 012718 444 IHALNETVS 452 (458)
Q Consensus 444 ~~~l~~~~~ 452 (458)
+++|.++++
T Consensus 379 l~~l~~~l~ 387 (389)
T 1o4s_A 379 LDRIEDFLN 387 (389)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=276.47 Aligned_cols=327 Identities=14% Similarity=0.166 Sum_probs=252.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcC
Q 012718 103 HFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG 182 (458)
Q Consensus 103 ~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g 182 (458)
++.+..+.+.++++++.+++++|++ +.++||+|+|+|++.++..+ ++||+|++++++|++. .+..+++..|
T Consensus 27 ~h~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~sgt~a~~~~~~~~-----~~gd~vi~~~~~~~~~--~~~~~~~~~g 97 (379)
T 3ke3_A 27 NHMSKAFQEVMNDLLSNLKTVYNAE--AAVIIPGSGTYGMEAVARQL-----TIDEDCLIIRNGWFSY--RWTQILEKGK 97 (379)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHHH-----CTTCEEEEEECSHHHH--HHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCC--CEEEEcCChhHHHHHHHHhC-----CCCCeEEEEeCCchhH--HHHHHHHHhC
Confidence 3445667788889999999999987 38999999999999998655 5899999999999875 4455666666
Q ss_pred --CeEEEEeCCCC---------CCCCHHHHHHhhc-CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccc
Q 012718 183 --ANLKFLNLNDD---------ESPDLDKLKEMLS-RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQ 247 (458)
Q Consensus 183 --~~~~~v~~~~~---------~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~ 247 (458)
.+++.++.+.. +.+|++++++.++ .++++|++++++|++|.+.| +++|.++|+++|+++|+|+++
T Consensus 98 ~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~ 177 (379)
T 3ke3_A 98 FAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIA 177 (379)
T ss_dssp CSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 47888876532 2579999999995 48899999999999999999 999999999999999999999
Q ss_pred cCCcccCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCC-------CCCCCccCC
Q 012718 248 SVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTF-------ADPPSRFEA 319 (458)
Q Consensus 248 ~~g~~~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~ 319 (458)
+ |..++++..+++|++++|+||+ .||.|+|++++++++++.+.+...... +.+...| ......+ .
T Consensus 178 ~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~-~ 250 (379)
T 3ke3_A 178 S-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCF-----SLDLKQWLTIMRAYENGGHAY-H 250 (379)
T ss_dssp C-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCS-----TTCHHHHHHHHHHHHTTSCCC-S
T ss_pred c-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCce-----eecHHHHHHHHHhhhccCCCC-C
Confidence 9 8888887777899999999995 568889999999987765543211000 0000000 0000111 3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeCCCChHHHHHH
Q 012718 320 GTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVENIHPTDIATL 398 (458)
Q Consensus 320 gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~ 398 (458)
+|++...++++.++++++.+.|++++.++.+++++++.+.|+++ ++++..+.. .+.+ +..+..++. ...+.+.
T Consensus 251 ~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~----~~~~~i~~~~~~~~-~~~~~~~ 324 (379)
T 3ke3_A 251 ATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEG----FEAPGVVVSYTERD-DMHKGSA 324 (379)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTT----CBCSSEEEEECSCH-HHHSSHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCcc----ccCceEEEEccCCc-chHHHHH
Confidence 58999999999999999998899999999999999999999988 887765432 2345 444554431 2223667
Q ss_pred HhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 399 LDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 399 l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
|.++ ||.+.+|..|.... ....+.+|+|++.++|++||++++++|+++++++.
T Consensus 325 L~~~-Gi~v~~g~~~~~~~---~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 325 FAEA-GLQIAAGVPLKVGE---PDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp HHHT-TCCCEECCCCSSCC---CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHC-CeEEeCCccccccc---cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 7777 99999887653210 01157899999999999999999999999998764
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=274.54 Aligned_cols=375 Identities=15% Similarity=0.108 Sum_probs=274.1
Q ss_pred CCCCccchhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHH
Q 012718 40 TSTDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKK 119 (458)
Q Consensus 40 ~~~~~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (458)
...+...+.+.+++.+. ++ +...+++....++.+++.+.+++.+.+.....+. .......+..+++++.
T Consensus 35 ~~~~~~~~~~~~~~~i~-l~-----gnp~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~-----~~~p~~~~le~~~~~~ 103 (502)
T 3hbx_A 35 NSIPKEAAYQIINDELM-LD-----GNPRLNLASFVTTWMEPECDKLIMSSINKNYVDM-----DEYPVTTELQNRCVNM 103 (502)
T ss_dssp SCCCHHHHHHHHHHHGG-GS-----CCGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCT-----TTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc-cC-----CCCCceeccccCCCCCHHHHHHHHHHhccCCCCh-----hcChhHHHHHHHHHHH
Confidence 34444444455544432 22 1233445444456778888888887654322211 2223456777789999
Q ss_pred HHHHcCCC--CCC--cEEEeCChhHHHHHHHHHcCCCCC----CCCC-----EEEEcCCCCccchHHHHHHHHHcCCeEE
Q 012718 120 VAAFINAS--DSG--EIVFTKNATEAINLVAYSWGLSNL----KSGD-----EVILTVAEHHSAIVPWQLVAQKTGANLK 186 (458)
Q Consensus 120 la~~~g~~--~~~--~v~~t~g~t~a~~~~~~~l~~~~~----~~g~-----~vl~~~~~~~s~~~~~~~~a~~~g~~~~ 186 (458)
+++++|++ +++ ..++|+|+|+|+.+++.++..... ++|+ .|+++.++|.+ +...++..|++++
T Consensus 104 la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s----~~~~~~~~G~~~~ 179 (502)
T 3hbx_A 104 IAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVC----WEKFARYFEVELK 179 (502)
T ss_dssp HHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHH----HHHHHHHTTCEEE
T ss_pred HHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHH----HHHHHHHcCceeE
Confidence 99999998 432 234699999999999887631100 0154 89999999995 5677788899999
Q ss_pred EEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc------CcEEEEeccccCCc-------c
Q 012718 187 FLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV------GAKVLVDACQSVPH-------M 252 (458)
Q Consensus 187 ~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~------~~~vivD~a~~~g~-------~ 252 (458)
.++++++ +.+|++++++++++++++|++++++|+||.+.|+++|.++|+++ |+++|+|++|+.+. .
T Consensus 180 ~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~ 259 (502)
T 3hbx_A 180 EVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPEL 259 (502)
T ss_dssp EECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC
T ss_pred EEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccc
Confidence 9999876 88999999999999999999999999999999999999999999 99999999998443 2
Q ss_pred cCCCCCCCCcEEEecccCCC-CCCceeEEEEecc-cccc-CC---CccccCcceEeeecCCCCCCCCCCccC-CCCCCHH
Q 012718 253 VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSD-LLSA-MP---PFLGGGEMISDVFLDHSTFADPPSRFE-AGTPAIG 325 (458)
Q Consensus 253 ~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~~-~~~~-l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~ 325 (458)
+.++...++|++++|+||++ +|.|+|+++++++ .+.. +. .+.. +.. ..+. .++.+..
T Consensus 260 ~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~-~~~---------------~~~~~~~sr~~~ 323 (502)
T 3hbx_A 260 EWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLG-ADQ---------------PTFTLNFSKGSS 323 (502)
T ss_dssp CCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSS-SCE---------------EECCSCCSCBSH
T ss_pred ccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCccccc-CCC---------------CCccccCCchHH
Confidence 34444457999999999955 7899999998764 3321 11 1111 110 0111 2455555
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhh
Q 012718 326 EAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQ 402 (458)
Q Consensus 326 ~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~ 402 (458)
.++++..++..+...++.++.++..+++++|.+.|.+++++++..+.+. .++++|++++ .+..++.+.|.++
T Consensus 324 ~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~-----~~~v~f~~~~~~~~~~~~l~~~L~~~ 398 (502)
T 3hbx_A 324 QVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEG-----VPLVAFSLKDSSCHTEFEISDMLRRY 398 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSS-----SSEEEEEESSCSSCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCC-----ceEEEEEecCCCcCCHHHHHHHHHhC
Confidence 6788888888887778899999999999999999999988998866222 7799999874 4556899999988
Q ss_pred cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 403 YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 403 ~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
||.++...... .......+||+++..++.+|++++++.|+++++++++
T Consensus 399 -Gi~v~~~~~p~-----~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 399 -GWIVPAYTMPP-----NAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp -TCBCCEEECCT-----TCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred -CcEEeeccCCc-----ccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99875322111 1122468999999999999999999999999987754
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=275.22 Aligned_cols=338 Identities=17% Similarity=0.173 Sum_probs=254.5
Q ss_pred CCeEEecCCCC-----CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------------CCC
Q 012718 66 KKLVYLDNAAT-----SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------------ASD 128 (458)
Q Consensus 66 ~~~i~l~~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------------~~~ 128 (458)
+++++|+.+.. .++++.+.+++.+.+.....+. + .......++|++++++++ +++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~----y----~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~ 104 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNG----Y----FPTVGSPEAREAVATWWRNSFVHKEELKSTIVK 104 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSS----C----CCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCC----c----CCCCCCHHHHHHHHHHHHhhhcccccCCCCCCc
Confidence 56799998863 4778999999998876421110 0 111234578888888887 444
Q ss_pred CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhc
Q 012718 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLS 206 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~ 206 (458)
+ +|++|+|+++|+.+++.++ +++||+|+++.++|++ +...++..|++++.++.+++ +.+|++++++.++
T Consensus 105 ~-~v~~~~g~~~al~~~~~~l----~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 175 (416)
T 1bw0_A 105 D-NVVLCSGGSHGILMAITAI----CDAGDYALVPQPGFPH----YETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD 175 (416)
T ss_dssp G-GEEEESHHHHHHHHHHHHH----CCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC
T ss_pred c-eEEEeCChHHHHHHHHHHh----CCCCCEEEEcCCCcHh----HHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhc
Confidence 4 9999999999999999988 6899999999999995 45566778999999998653 5689999999998
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCC----c----ccCCCCC---CCCcEEEecccCCC
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVP----H----MVVDVQG---LDADFLVASSHKMC 272 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g----~----~~~~~~~---~~~d~~~~s~~K~~ 272 (458)
++++++++++++||||.++| +++|+++|+++|+++|+|++|+.. . ...++.. .+.+++++|+||.+
T Consensus 176 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 255 (416)
T 1bw0_A 176 DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL 255 (416)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhC
Confidence 88999999999999999999 899999999999999999999852 2 1122222 23467889999988
Q ss_pred CCCc--eeEEEEecc--ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Q 012718 273 GPTG--IGFLFGKSD--LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY 348 (458)
Q Consensus 273 gp~g--~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~ 348 (458)
+.+| +|+++++++ +++.+....... .....+++.....++..+++......++++.++
T Consensus 256 ~~~Glr~G~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 317 (416)
T 1bw0_A 256 VVPGWRLGWLLYVDPHGNGPSFLEGLKRV------------------GMLVCGPCTVVQAALGEALLNTPQEHLDQIVAK 317 (416)
T ss_dssp SCGGGCCEEEEEECTTCSCHHHHHHHHHH------------------HHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCCCceEEEEEeeCchhhHHHHHHHHHHH------------------hccccCCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7777 899999874 444332110000 001235666666777666664323346788899
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC------CChHHHHHHHh-hhcCeEeccCCCCChhhHhhc
Q 012718 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN------IHPTDIATLLD-QQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~ 421 (458)
++++++++.+.|++++++++..+. .+.++++.++. .+..++.+.|. ++ ||.+++|..|
T Consensus 318 ~~~~~~~l~~~L~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-gi~v~~g~~f-------- 382 (416)
T 1bw0_A 318 IEESAMYLYNHIGECIGLAPTMPR------GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEE-NVQVLPGTIF-------- 382 (416)
T ss_dssp HHHHHHHHHHHHTTSTTEEECCCC------BTTEEEEEECGGGBSSCCSHHHHHHHHHHHH-CEECEEGGGG--------
T ss_pred HHHHHHHHHHHHHhCCCCcccCCC------eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHC-CEEEeccccc--------
Confidence 999999999999988898876543 15678888762 45678888875 66 9999988744
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.++++|++++ .+++++++++++|.+++++.+
T Consensus 383 ~~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 383 HAPGFTRLTTT--RPVEVYREAVERIKAFCQRHA 414 (416)
T ss_dssp TCTTEEEEECC--SCHHHHHHHHHHHHHHHHHHB
T ss_pred CCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence 33679999997 689999999999999998754
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=274.88 Aligned_cols=337 Identities=16% Similarity=0.150 Sum_probs=256.1
Q ss_pred CCeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+.++.|..+.. + ..++.+.+++.+.+..+.... ......++..+..+++++.+++++|.+ +.+++++|++|+.
T Consensus 43 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~--~~~~~~~g~~~~~~~l~~~la~~~~~~---~~i~~~sGt~a~~ 117 (399)
T 3tqx_A 43 KEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGM--ASVRFICGTQTIHKELEKDISEFLGTD---DTILYSSCFDANG 117 (399)
T ss_dssp EEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCC--CSCCCCCCCBHHHHHHHHHHHHHHTCS---EEEEESCHHHHHH
T ss_pred eeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCC--CCcCccccCchHHHHHHHHHHHHHCCC---cEEEECchHHHHH
Confidence 44566665543 3 357899999999887643211 111111233566788999999999986 4555566788999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHI 217 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~ 217 (458)
.++.++ +++||.|+++.++|++. ...++..|++++.++.. |++++++.+++ ++++|+++++
T Consensus 118 ~~l~~~----~~~gd~v~~~~~~~~~~----~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~~~v~~~~~ 184 (399)
T 3tqx_A 118 GLFETL----LGPEDAIISDELNHASI----IDGIRLCKAQRYRYKNN-----AMGDLEAKLKEADEKGARFKLIATDGV 184 (399)
T ss_dssp TTHHHH----CCTTCEEEEETTCCHHH----HHHHHSCCSEEEEECTT-----CTTHHHHHHHHHHTTTCSSEEEEEESE
T ss_pred HHHHHh----cCCCCEEEECCcccHHH----HHHHHHcCCceeEeCCC-----CHHHHHHHHHhhhccCCCceEEEEeCC
Confidence 999888 78999999999999954 45566779999999863 77788888765 7899999999
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC------CCC--CCCcEEEecccCCCC-CCceeEEEEeccccc
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD------VQG--LDADFLVASSHKMCG-PTGIGFLFGKSDLLS 288 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~------~~~--~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~ 288 (458)
+||||.+.|+++|.++|+++|+++|+|++|+.+....+ ... .++|++++|+||++| +.| |+++.++++++
T Consensus 185 ~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~ 263 (399)
T 3tqx_A 185 FSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHKEIIE 263 (399)
T ss_dssp ETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCHHHHH
Confidence 99999999999999999999999999999986543221 111 257999999999777 776 99999998776
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+......+ ...++++...+.++..+++... .+.+++.++++++++++.+.|+++ ++++
T Consensus 264 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 322 (399)
T 3tqx_A 264 WLRNRSRPY-------------------LFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQL 322 (399)
T ss_dssp HHHHHCHHH-------------------HSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCB
T ss_pred HHHHhCcce-------------------eccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCc
Confidence 655321111 1135777777778888888774 357899999999999999999887 7766
Q ss_pred eCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
..+. ++++++.+++ .+..++.+.|.++ ||.+.++.++..+ ...+++|++++.+++++|+++++++|
T Consensus 323 ~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~-----~~~~~iRi~~~~~~~~~~i~~~~~~l 389 (399)
T 3tqx_A 323 VPGN-------HPIIPVMLGDAQLATNMADHLLQE-GIYVVGFSYPVVP-----MGKARIRVQMSAVHTQQQLDRAIEAF 389 (399)
T ss_dssp CCCS-------SSEEEEEEECHHHHHHHHHHHHHT-TEECCEECTTTSC-----TTCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCC-------CCEEEEEeCCHHHHHHHHHHHHHC-CCEEeeeCCCCCC-----CCCceEEEEeecCCCHHHHHHHHHHH
Confidence 5332 7788888864 2467899999988 9999876533211 12469999999889999999999999
Q ss_pred HHHHHhhh
Q 012718 448 NETVSFFN 455 (458)
Q Consensus 448 ~~~~~~~~ 455 (458)
+++++++.
T Consensus 390 ~~~~~~~~ 397 (399)
T 3tqx_A 390 GQVGKKLG 397 (399)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99998764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=272.92 Aligned_cols=334 Identities=15% Similarity=0.146 Sum_probs=247.8
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
++++++|+.+... +.++.+.+++.+.+.... .++......+++|+.++++++ ++++ +|++|+|
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~---------~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~v~~t~g 99 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLETDA---------LGYTVALGLPALRQRIARLYGEWYGVDLDPG-RVVITPG 99 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHHHCCCCCGG-GEEEESS
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC---------CCCCCCCChHHHHHHHHHHHHHHhCCCCCHH-HEEEecC
Confidence 4678999988766 557888999888765311 111112234567777777764 4444 9999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++|+++++.++ +++||+|+++.++|++. ...++..|++++.++++++ +.+|++++++. ++++|+++
T Consensus 100 ~~~al~~~~~~l----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~ 168 (391)
T 3h14_A 100 SSGGFLLAFTAL----FDSGDRVGIGAPGYPSY----RQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVA 168 (391)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEEESCCHHH----HHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEE
T ss_pred hHHHHHHHHHHh----cCCCCEEEEcCCCCccH----HHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEEC
Confidence 999999999998 68999999999999954 5566778999999999865 36799999876 78999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCC-CCCcEEEecccCCCCCCc--eeEEEEeccc
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG-LDADFLVASSHKMCGPTG--IGFLFGKSDL 286 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~~~~ 286 (458)
+++||||.++| +++|+++|+++|+++|+|++|+.... +..... .+.+++++|+||.+|+.| +|++++++++
T Consensus 169 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 248 (391)
T 3h14_A 169 SPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQ 248 (391)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGG
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHH
Confidence 99999999999 88899999999999999999984321 222222 246789999999888666 8999999887
Q ss_pred cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Q 012718 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~ 366 (458)
++.+..... ...++++.....++.++++ ....+++.+++++++++++.+.|+++ ++
T Consensus 249 ~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~-~~ 304 (391)
T 3h14_A 249 VRVVERIAQ---------------------NMFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKA-GF 304 (391)
T ss_dssp HHHHHHHHH---------------------HTTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHh---------------------hhccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 766543322 1124566666666666666 22336788899999999999999887 43
Q ss_pred EEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 367 RIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
....++. .+.++++.++ +.+..++.+.|.+++||.+++|..|..+ ..++++|++++. +++|+++++
T Consensus 305 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-----~~~~~iRis~~~--~~~~i~~~l 372 (391)
T 3h14_A 305 TRIAPPD-----GAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPE-----RGAGTLRFSYAR--ATADIEEGL 372 (391)
T ss_dssp CCBCCCC-----BTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTT-----TGGGEEEEECCS--CHHHHHHHH
T ss_pred CcccCCC-----eeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCC-----CCCCeEEEEecC--CHHHHHHHH
Confidence 3322221 1457788886 4577889888776559999999877542 115799999995 889999999
Q ss_pred HHHHHHHHhhh
Q 012718 445 HALNETVSFFN 455 (458)
Q Consensus 445 ~~l~~~~~~~~ 455 (458)
++|.+++++..
T Consensus 373 ~~l~~~~~~~~ 383 (391)
T 3h14_A 373 DRLEAFMQARG 383 (391)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhc
Confidence 99999998654
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-33 Score=270.35 Aligned_cols=336 Identities=14% Similarity=0.145 Sum_probs=253.9
Q ss_pred CCeEEecCCCCCC--CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAATSQ--KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
..++.|..+..-. .++.+.+++.+.+..+.. .+ +.+....+.....+++++.+++++|.+ +.+++++||+++.
T Consensus 45 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~-~~-~~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGs~a~~ 119 (401)
T 1fc4_A 45 SHVINFCANNYLGLANHPDLIAAAKAGMDSHGF-GM-ASVRFICGTQDSHKELEQKLAAFLGME---DAILYSSCFDANG 119 (401)
T ss_dssp CEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCS-CC-CSCHHHHCCBHHHHHHHHHHHHHHTCS---EEEEESCHHHHHH
T ss_pred ccEEEeeccCcccccCCHHHHHHHHHHHHHhCC-CC-CCCCcccCCcHHHHHHHHHHHHHhCCC---cEEEeCChHHHHH
Confidence 4555565553322 489999999998865322 11 111222222466788999999999987 4456666788999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHI 217 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~ 217 (458)
.++.++ +++||.|+++.+.|.+.. ..++..|++++.++. .|++++++.+++ ++++|+++++
T Consensus 120 ~~~~~~----~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~ 186 (401)
T 1fc4_A 120 GLFETL----LGAEDAIISDALNHASII----DGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGV 186 (401)
T ss_dssp TTHHHH----CCTTCEEEEETTCCHHHH----HHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESE
T ss_pred HHHHHH----cCCCCEEEEcchhHHHHH----HHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 999887 689999999999998553 345677999998874 388999988875 7899999999
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc-c--------CCCCCCCCcEEEecccCCC-CCCceeEEEEecccc
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-V--------VDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLL 287 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~--------~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~~~~ 287 (458)
+||||.+.|+++|.++|+++|+++|+|++|+.+.. + +++.. +.|++++|+||++ |+.| |+++++++++
T Consensus 187 ~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g-G~~~~~~~~~ 264 (401)
T 1fc4_A 187 FSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG-GYTAARKEVV 264 (401)
T ss_dssp ETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC-EEEEECHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC-EEEEcCHHHH
Confidence 99999999999999999999999999999975543 2 33332 5799999999977 7775 9999998877
Q ss_pred ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Q 012718 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR 367 (458)
Q Consensus 288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~ 367 (458)
+.+......+ .+ .++++...+.++..+++.+.. .+++.++++++++++.+.|+++ +++
T Consensus 265 ~~l~~~~~~~------------------~~-~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~ 322 (401)
T 1fc4_A 265 EWLRQRSRPY------------------LF-SNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAA-GFT 322 (401)
T ss_dssp HHHHHHCHHH------------------HH-SCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred HHHHHhCcCc------------------ee-CCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 6654321100 01 346777778888888887754 4778899999999999999987 776
Q ss_pred EeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHH
Q 012718 368 IYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHA 446 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~ 446 (458)
+. +. .++++++.+++ .+..++.+.|.++ ||.++++..|..+. ..+++|++++.+++++|+++++++
T Consensus 323 ~~-~~------~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~-----~~~~iRi~~~~~~~~~~i~~~~~~ 389 (401)
T 1fc4_A 323 LA-GA------DHAIIPVMLGDAVVAQKFARELQKE-GIYVTGFFYPVVPK-----GQARIRTQMSAAHTPEQITRAVEA 389 (401)
T ss_dssp BC-CS------SSSEEEEEEECHHHHHHHHHHHHHT-TEECCEECTTSSCT-----TCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cc-CC------CCCEEEEEcCChHHHHHHHHHHHHC-CcEEeeecCCCCCC-----CCceEEEEeCCCCCHHHHHHHHHH
Confidence 65 21 26788898864 3467888999988 99999887553211 146899999988999999999999
Q ss_pred HHHHHHhhhc
Q 012718 447 LNETVSFFNV 456 (458)
Q Consensus 447 l~~~~~~~~~ 456 (458)
|++++++++.
T Consensus 390 l~~~~~~~~~ 399 (401)
T 1fc4_A 390 FTRIGKQLGV 399 (401)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhCC
Confidence 9999987653
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=269.37 Aligned_cols=347 Identities=13% Similarity=0.052 Sum_probs=257.0
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCC----cEEEeCChhHHHHHHHHHcCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSG----EIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~----~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
++.++.+.+++.+++.. +. ..+..+....+..+++++.+++++|.+.+. .+++|+|+|+|+.+++.++...
T Consensus 52 ~~~~~~v~e~~~~a~~~---~~--~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~ 126 (452)
T 2dgk_A 52 TWDDENVHKLMDLSINK---NW--IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR 126 (452)
T ss_dssp CCCCHHHHHHHHHTTTC---BT--TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---CC--CChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHH
Confidence 35566777777665532 21 112223456677888999999999998652 4899999999999998876210
Q ss_pred C----CCC-----CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 153 N----LKS-----GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 153 ~----~~~-----g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
. .++ +++|++++ .|. .+...++..|++++.+++++ ++.+|+++|++++++++++|++++++|+||
T Consensus 127 ~~~~~~~~G~~~~~~~vi~~~-~h~----~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG 201 (452)
T 2dgk_A 127 WRKRMEAAGKPTDKPNLVCGP-VQI----CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTG 201 (452)
T ss_dssp HHHHHHHTTCCCSCCEEEESS-CCH----HHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTC
T ss_pred HHHHHHhcCCCCCCcEEEECC-CcH----HHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCc
Confidence 0 003 35899999 777 55777788899999999987 689999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhc------CcEEEEeccccCCcc-------cCCCCCCCCcEEEecccCC-CCCCceeEEEEecc-cc
Q 012718 223 SILPIEEIVHWSHDV------GAKVLVDACQSVPHM-------VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSD-LL 287 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~------~~~vivD~a~~~g~~-------~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~-~~ 287 (458)
.+.|+++|+++|+++ |+++|+|++|+.+.. +.++...++|++++|+||+ ++|.|+|+++++++ .+
T Consensus 202 ~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~ 281 (452)
T 2dgk_A 202 NYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEAL 281 (452)
T ss_dssp BBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGS
T ss_pred ccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHH
Confidence 999999999999995 999999999987643 2334344789999999995 57888999999864 33
Q ss_pred -ccCC--CccccCcceEeeecCCCCCCCCCCcc-CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 288 -SAMP--PFLGGGEMISDVFLDHSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 288 -~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+.+. +.+.++.. ..+ ..++.+....+++.+++..+...+++++.++..++++++.+.|+++
T Consensus 282 ~~~~~~~~~~~~~~~---------------~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~ 346 (452)
T 2dgk_A 282 PQELVFNVDYLGGQI---------------GTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL 346 (452)
T ss_dssp CGGGCEEECCTTCCE---------------EECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCccccCCCC---------------CCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3332 11111100 001 1245555566777788887777788999999999999999999999
Q ss_pred CCEEEeCCCCCCcCccccEEEEEeCC-----CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 364 PNIRIYGPKPSEHVQRAALCSFNVEN-----IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
+++++..+... ....++++|++++ .+..++.+.|.++ ||.++... .+. .+...+++|++++.++|.+
T Consensus 347 ~~~~~~~~~~~--~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~--~~~---~~~~~~~lRis~~~~~t~e 418 (452)
T 2dgk_A 347 GPYEFICTGRP--DEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQVPAFT--LGG---EATDIVVMRIMCRRGFEMD 418 (452)
T ss_dssp SSEEEEEECCT--TTBSSEEEEEECTTCCCSCCHHHHHHHHHHT-TCBCCEEE--CST---TCTTCEEEEEECCTTCCHH
T ss_pred CCeEEecCCCC--CCCeEEEEEEecCcccccCCHHHHHHHHHhc-CCeeeeee--CCc---ccCCeEEEEEEecCCCCHH
Confidence 88998754210 1236799999875 2447899999988 99765311 110 1122558999999989999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 012718 439 DVDEFIHALNETVSFFNV 456 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~~ 456 (458)
|++++++.|+++++++++
T Consensus 419 ~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 419 FAELLLEDYKASLKYLSD 436 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999877654
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=272.06 Aligned_cols=335 Identities=13% Similarity=0.067 Sum_probs=250.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH----cC--CCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF----IN--ASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~g--~~~~~~v~~t~g~ 138 (458)
+++++|+.+..+ ++++.+.+++.+.+.... . .+.. . ..++++.++++ +| .+++ +|++|+|+
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y~~--~----~~~l~~~la~~l~~~~g~~~~~~-~v~~t~g~ 98 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDETV-L----GYTG--P----TEEYKKTVKKWMKDRHQWDIQTD-WIINTAGV 98 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHCC-C----SSBC--C----CHHHHHHHHHHHHHHHCCCCCGG-GEEEESSH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcCC-C----CCCC--C----cHHHHHHHHHHHHHHhCCCCChh-hEEEcCCH
Confidence 356788777665 568899999998876411 0 0110 1 33566666665 46 4443 89999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCC--CCCHHHHHHhhc-CCceEEEE
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDE--SPDLDKLKEMLS-RKTKLVVI 214 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~--~~d~~~l~~~l~-~~~~~v~~ 214 (458)
++|+.+++.++ +++||+|+++.++|++. ...++..|++++.++.+ +++ .+|++++++.++ .++++|++
T Consensus 99 ~~a~~~~~~~l----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (399)
T 1c7n_A 99 VPAVFNAVREF----TKPGDGVIIITPVYYPF----FMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (399)
T ss_dssp HHHHHHHHHHH----CCTTCEEEECSSCCTHH----HHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred HHHHHHHHHHh----cCCCCEEEEcCCCcHhH----HHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence 99999999998 67899999999999954 55566779999999886 333 479999999998 68899999
Q ss_pred ecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCCC-----CCCcEEEecccCCCCCCc--eeEE
Q 012718 215 HHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQG-----LDADFLVASSHKMCGPTG--IGFL 280 (458)
Q Consensus 215 ~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~-----~~~d~~~~s~~K~~gp~g--~G~l 280 (458)
++++||||.++| +++|+++|+++|+++|+|++|+.... +.++.. .+.++++.|+||.+|++| +|++
T Consensus 171 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 250 (399)
T 1c7n_A 171 CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI 250 (399)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE
T ss_pred cCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEE
Confidence 999999999999 89999999999999999999985321 223322 245789999999888667 8999
Q ss_pred EEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 281 FGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 281 ~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++++ ++++.+...... +..++++.....++.++++... ..+++++++++++++++.+.
T Consensus 251 ~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~ 309 (399)
T 1c7n_A 251 IIKNPDIRERFTKSRDA--------------------TSGMPFTTLGYKACEICYKECG-KWLDGCIKVIDKNQRIVKDF 309 (399)
T ss_dssp ECCCHHHHHHHHHHHHH--------------------TTCCCCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHhh--------------------cccCCCCHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHHHHH
Confidence 9974 566655433221 1123567766666666666422 23678888999999999999
Q ss_pred Hhc-CCCEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 360 LLS-IPNIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 360 L~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
|++ +|++++..+. .+.++++.++. .+..++.+.|. ++ ||.+++|..|... .++++||+++.
T Consensus 310 L~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~-gi~v~~g~~~~~~------~~~~iRis~~~-- 374 (399)
T 1c7n_A 310 FEVNHPEIKAPLIE------GTYLQWIDFRALKMDHKAMEEFMIHKA-QIFFDEGYIFGDG------GIGFERINLAA-- 374 (399)
T ss_dssp HHHHCTTSBCCCCS------BSSEEEEECGGGCCCHHHHHHHHHHTT-CCCCEEGGGGCGG------GTTEEEEECCS--
T ss_pred HHhhCCCCeEecCC------ceEEEEEEcccCCCCHHHHHHHHHHhC-CEEEeCccccCCC------CCCeEEEEecc--
Confidence 988 7887765433 13466788873 57788999997 56 9999998765421 26799999995
Q ss_pred CHHHHHHHHHHHHHHHHhhhc
Q 012718 436 TKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~~~ 456 (458)
.++++++++++|.++++++++
T Consensus 375 ~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 375 PSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999987754
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=273.89 Aligned_cols=311 Identities=19% Similarity=0.194 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC-CcE--EEeCChhHHHHHHHHHcCCCCCCCC--------CEEEEcCCCCccchHHHHH
Q 012718 108 KATDEYELARKKVAAFINASDS-GEI--VFTKNATEAINLVAYSWGLSNLKSG--------DEVILTVAEHHSAIVPWQL 176 (458)
Q Consensus 108 ~~~~~~~~~~~~la~~~g~~~~-~~v--~~t~g~t~a~~~~~~~l~~~~~~~g--------~~vl~~~~~~~s~~~~~~~ 176 (458)
...+..+++++.+++++|.+.. +++ ++|+|+|+|+..++.++ .++| |+|+++.++|++ +..
T Consensus 136 ~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~----~~~g~~~~g~~~d~Vi~~~~~~~~----~~~ 207 (514)
T 3mad_A 136 STAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTY----RDWARATKGITAPEAVVPVSAHAA----FDK 207 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHH----HHHHHHHHCCSSCEEEEETTSCTH----HHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHH----HHHhhhhcCCCCCeEEEeCccchH----HHH
Confidence 3456666788999999998831 266 99999999999999987 3344 899999999995 466
Q ss_pred HHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc----
Q 012718 177 VAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM---- 252 (458)
Q Consensus 177 ~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~---- 252 (458)
.++..|++++.+++++++.+|+++|++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+..
T Consensus 208 ~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~ 287 (514)
T 3mad_A 208 AAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAE 287 (514)
T ss_dssp HHHHHTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHH
T ss_pred HHHHcCCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHH
Confidence 6677799999999998999999999999999999999999999999999999999999999999999999985433
Q ss_pred -------cCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccCCCccc-cCcceEeeecCCCCCCCCCCccCCCCCC
Q 012718 253 -------VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLG-GGEMISDVFLDHSTFADPPSRFEAGTPA 323 (458)
Q Consensus 253 -------~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~gt~~ 323 (458)
+++....++|++++|+||+ +++.|+|+++++++.+........ .|... .+ ......|+.+
T Consensus 288 ~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~gs~~ 356 (514)
T 3mad_A 288 RLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGG--------LY---FSPTFAGSRP 356 (514)
T ss_dssp HTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTC--------SE---EESSSCSSCC
T ss_pred hcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCC--------cc---cCCccCCCCc
Confidence 3555667899999999995 778889999999876544332111 11000 00 0112256778
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhc
Q 012718 324 IGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQY 403 (458)
Q Consensus 324 ~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 403 (458)
....+++.++++.+...+++++.++..++++++.+.|++++++++..+. .++++|...+.+..++.+.|.++
T Consensus 357 ~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-------~~~~~~~~~~~~~~~l~~~L~~~- 428 (514)
T 3mad_A 357 GALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-------LWVIAVASDELNIYQVMEEMAGR- 428 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-------SSEEEEECSSSCHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-------eEEEEEeCCCCCHHHHHHHHHhc-
Confidence 8778888899998888888999999999999999999999899987655 45888888777888999999998
Q ss_pred CeEeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 404 GVATRSGHHCAQPLHRYLGVNASARASLH-FYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 404 gi~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
||.+ ++..+ ++.+|+++. ..++++|++++++.|+++++++++
T Consensus 429 Gi~v-~g~~~----------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 429 GWRL-NGLHR----------PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp TCBC-EEETT----------TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEe-ccCCC----------CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9987 44322 568999988 444669999999999999987653
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=274.34 Aligned_cols=380 Identities=10% Similarity=0.033 Sum_probs=264.6
Q ss_pred CCCccchhhhhc-CCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHH
Q 012718 41 STDSVSLGHITR-PDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKK 119 (458)
Q Consensus 41 ~~~~~~~~~~~r-~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (458)
..+..++.+.++ ...+..... ....||++...++.++.+.+++..+... .+ ...+..+....+..+.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~----~~~~yl~~~~~~~~~~~v~~~~~~~~~n--~~--~~~~~~~~~~~~le~~~~~~ 148 (497)
T 2qma_A 77 NAPLKSVIDDVAELVAKNAIFT----QHPDCIAHLHTPPLMPAVAAEAMIAALN--QS--MDSWDQASSATYVEQKVVNW 148 (497)
T ss_dssp CCCHHHHHHHHHHHTTTTSCCT----TSTTBCSSSCCCCBHHHHHHHHHHHHHC--CC--TTCGGGCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCC----CCCCeeEeCCCCCcHHHHHHHHHHHhhc--cc--ccchhhChHHHHHHHHHHHH
Confidence 333444444444 345554332 3347999999999999999988766542 22 22233334556667778999
Q ss_pred HHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC---------CC------CC-EEEEcCCCCccchHHHHHHHHHcCC
Q 012718 120 VAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL---------KS------GD-EVILTVAEHHSAIVPWQLVAQKTGA 183 (458)
Q Consensus 120 la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~---------~~------g~-~vl~~~~~~~s~~~~~~~~a~~~g~ 183 (458)
+++++|.++.+.++||+|+|+|+..++.+++...+ .+ |+ .|+++..+|++.. ..++..|.
T Consensus 149 la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~----~~~~~~g~ 224 (497)
T 2qma_A 149 LCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ----KSASWMGL 224 (497)
T ss_dssp HHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH----HHHHHTTS
T ss_pred HHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHH----HHHHHcCC
Confidence 99999997645899999999999999887410001 12 45 7999999999654 44455555
Q ss_pred ---eEEEEeCCCCCCCCHHHHHHhhcCC------ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccC
Q 012718 184 ---NLKFLNLNDDESPDLDKLKEMLSRK------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV 254 (458)
Q Consensus 184 ---~~~~v~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~ 254 (458)
+++.+|.++++.+|+++|++.++++ +.+|++++++|+||.+.|+++|+++|+++|+++|+|++|+.+..+.
T Consensus 225 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~ 304 (497)
T 2qma_A 225 GEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILS 304 (497)
T ss_dssp CGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGS
T ss_pred CcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhC
Confidence 7999999888999999999998753 3488899999999999999999999999999999999999877654
Q ss_pred C----CCCC-CCcEEEecccC-CCCCCceeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHH
Q 012718 255 D----VQGL-DADFLVASSHK-MCGPTGIGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEA 327 (458)
Q Consensus 255 ~----~~~~-~~d~~~~s~~K-~~gp~g~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 327 (458)
+ +..+ ++|++++|+|| +++|.|+|+++++++. ++.+.. ..............+ .....+ ++..+ ..
T Consensus 305 ~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~---~~~yl~~~~~~~~~~--~~~~~~-~~r~~-~a 377 (497)
T 2qma_A 305 SHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLH---HADYLNREHDELPNL--VDKSIA-TTKRF-DA 377 (497)
T ss_dssp TTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC-------------------------C-CSCCC-TH
T ss_pred cchHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcC---CchhcCCccccCCCc--cccCCC-CCCch-hH
Confidence 4 2333 68999999999 5568889999998754 333321 100000000000000 000011 11111 23
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC------hHHHHHHHhh
Q 012718 328 IGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH------PTDIATLLDQ 401 (458)
Q Consensus 328 ~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~l~~ 401 (458)
+++.++++.+...+++++.++..++++++.+.|++++++++..++. .++++|++.+.. ..++.+.+.+
T Consensus 378 l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~------~~~v~f~~~~~~~~~~~l~~~l~~~l~~ 451 (497)
T 2qma_A 378 LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPS------LSTVLFRATHETADLDELNKALRLEALT 451 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCS------SSEEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCC------ceEEEEEEcCCccCHHHHHHHHHHHHHh
Confidence 4555667776666788899999999999999999999999875532 679999986432 2356677777
Q ss_pred hcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHhh
Q 012718 402 QYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 402 ~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+ |+.+.++. .++..+++|+++ +++++++||+++++.|+++++++
T Consensus 452 ~-G~~~~~~~--------~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 452 R-GIAVLGET--------IVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp H-TSCBCEEE--------EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred C-CCEEEEee--------EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 7 88775432 122356899998 88899999999999999988764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=268.38 Aligned_cols=332 Identities=15% Similarity=0.120 Sum_probs=247.6
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH----cCCC-CCC-cEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF----INAS-DSG-EIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~g~~-~~~-~v~~t~g~ 138 (458)
+++++|+.+... ++++.+.+++.+.+... .. .+.. .....+++++++++ +|.+ ..+ +|++|+|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~----~y~~----~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~ 100 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLAHHVAQG-AN----QYAP----MTGVQALREAIAQKTERLYGYQPDADSDITVTAGA 100 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CC----SCCC----TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHhh-cc----CCCC----CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCCh
Confidence 457899988765 47789999998887641 00 0110 11123555666665 4754 335 89999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
++|+..++.++ +++||+|++++++|++. ...++..|++++.++.++ ++.+|++++++.+++++++|+++++
T Consensus 101 ~~a~~~~~~~~----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p 172 (386)
T 1u08_A 101 TEALYAAITAL----VRNGDEVICFDPSYDSY----APAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTP 172 (386)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHHHHHHHHh----CCCCCEEEEeCCCchhH----HHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCC
Confidence 99999999998 67899999999999964 445667799999999876 4778999999999889999999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCC----CCCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQ----GLDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~----~~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
+||||.++| +++|+++|+++|+++|+|++|+.... ...+. ..+.|++++|+||.+|++| +|++++++
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 252 (386)
T 1u08_A 173 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA 252 (386)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH
Confidence 999999997 68999999999999999999985221 11221 2368999999999998778 89999998
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
++++.+..... ....+.+.....++..+++.. ...+++++++++++++++.+.|+++
T Consensus 253 ~~~~~l~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~- 309 (386)
T 1u08_A 253 PISAEIRKVHQ---------------------YLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNES- 309 (386)
T ss_dssp HHHHHHHHHHH---------------------HHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHH---------------------hhccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 87766543221 011244555555666666543 2236788899999999999999987
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
++++..+. .+.++++.+++ .+..++.+.|.+++||.+++|..|.... ..++++|++++ ++++||+
T Consensus 310 g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~----~~~~~iRis~~--~~~~~i~ 377 (386)
T 1u08_A 310 RLEILPCE------GTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADP----FPHKLIRLCFA--KKESTLL 377 (386)
T ss_dssp SCEECCCC------BSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSC----CCSCEEEEECC--SCHHHHH
T ss_pred CCeecCCC------ceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCC----CCCCEEEEEEc--CCHHHHH
Confidence 88876543 15588999875 4677888888643499999886432110 12679999998 5899999
Q ss_pred HHHHHHHH
Q 012718 442 EFIHALNE 449 (458)
Q Consensus 442 ~l~~~l~~ 449 (458)
+++++|.+
T Consensus 378 ~~~~~l~~ 385 (386)
T 1u08_A 378 AAAERLRQ 385 (386)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 99998864
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=270.63 Aligned_cols=332 Identities=16% Similarity=0.108 Sum_probs=249.3
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCC-cEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSG-EIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~-~v~~t~g 137 (458)
+++++.|+.+... +.++.+.+++.+.+.... . . ++.......++++++++++ |.+ ..+ +|++|+|
T Consensus 24 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~--~--~----~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g 95 (376)
T 2dou_A 24 GVGLIDLSIGSTDLPPPEAPLKALAEALNDPT--T--Y----GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG 95 (376)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHTTCGG--G--S----SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred CCCEEeccCCCCCCCCCHHHHHHHHHHHhCCC--c--C----CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence 4677889888665 367888888887764310 1 0 1112345667888888887 876 223 8999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+++++.+++.++ .++||+|+++.++|++. ...++..|++++.++.+.++.+|++.+++.+++++++|+++++
T Consensus 96 ~~~a~~~~~~~l----~~~gd~vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p 167 (376)
T 2dou_A 96 SQEGLAHLLLAL----TEPEDLLLLPEVAYPSY----FGAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYP 167 (376)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEESSCCHHH----HHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSS
T ss_pred cHHHHHHHHHHh----cCCCCEEEECCCCcHhH----HHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCC
Confidence 999999999988 67899999999999954 5556677999999998434457999999988778899999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---c---CCC-CCCCCcEEEecccCCCCCCc--eeEEEEecc
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---V---VDV-QGLDADFLVASSHKMCGPTG--IGFLFGKSD 285 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~---~~~-~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~ 285 (458)
+||||.++| +++|+++|+++|+++|+|++|+.+.. + +++ ...+.+++++|+||.+|++| +|+++.+++
T Consensus 168 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~ 247 (376)
T 2dou_A 168 NNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEE 247 (376)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHH
T ss_pred CCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHH
Confidence 999999998 67899999999999999999985432 1 222 22346799999999888666 899999988
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+++.+......+ ..+.+.....++..+++... ..+++.+++++++++++.+.|+++
T Consensus 248 ~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-- 303 (376)
T 2dou_A 248 ALARLERVKGVI---------------------DFNQYAGVLRMGVEALKTPK-EVVRGYARVYRERALGMAEALKGV-- 303 (376)
T ss_dssp HHHHHHHHHHHH---------------------CCCSCHHHHHHHHHHHTSCH-HHHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHhc---------------------ccCCCHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 776665332211 12445555566656665422 236778888999999999999886
Q ss_pred EEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
+++..+. .+.++++.++ +.+..++.+.|.++ ||.+++|..|... .++++|++++. +++++++++
T Consensus 304 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~------~~~~~Ris~~~--~~~~i~~~l 368 (376)
T 2dou_A 304 LSLLPPR------ATMYLWGRLPEGVDDLEFGLRLVER-GVALAPGRGFGPG------GKGFVRIALVR--PLEELLEAA 368 (376)
T ss_dssp SEECCCC------BSSEEEEECCTTCCHHHHHHHHHHT-TEECEEGGGGCGG------GTTEEEEECCS--CHHHHHHHH
T ss_pred cCccCCC------eeEEEEEECCCCCCHHHHHHHHHHC-CEEEcCchhhCCC------CCCeEEEEecC--CHHHHHHHH
Confidence 6665432 1457888887 45678899999999 9999998765321 26799999984 889999999
Q ss_pred HHHHHHH
Q 012718 445 HALNETV 451 (458)
Q Consensus 445 ~~l~~~~ 451 (458)
++|.+++
T Consensus 369 ~~l~~~l 375 (376)
T 2dou_A 369 KRIREAL 375 (376)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9998765
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=260.78 Aligned_cols=319 Identities=12% Similarity=0.107 Sum_probs=246.4
Q ss_pred EEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH------cCCCCCCcEEEeCChhHH
Q 012718 69 VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF------INASDSGEIVFTKNATEA 141 (458)
Q Consensus 69 i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------~g~~~~~~v~~t~g~t~a 141 (458)
++|+.+... +.++.+.+++.+.+............ ... .++++.++++ ++++++ +|++|+|++++
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~~-~~l~~~la~~l~~~~g~~~~~~-~v~~~~G~~~a 104 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPE------RDA-VELRDELAAYITKQTGVAVTRD-NLWAANGSNEI 104 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCC------TTC-HHHHHHHHHHHHHHHCCCCCGG-GEEEESHHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCC------ccH-HHHHHHHHHhhhhcccCCCChH-hEEECCChHHH
Confidence 788887665 57889999999988763211111111 111 3677777777 455554 89999999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCc
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNM 220 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~ 220 (458)
+..++.++ +++||+|++++++|++. ...++..|++++.++.++++.+|++++++.+++ ++++|++++++||
T Consensus 105 l~~~~~~l----~~~gd~Vl~~~~~y~~~----~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 176 (369)
T 3cq5_A 105 LQQLLQAF----GGPGRTALGFQPSYSMH----PILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNP 176 (369)
T ss_dssp HHHHHHHH----CSTTCEEEEEESSCTHH----HHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTT
T ss_pred HHHHHHHh----cCCCCEEEEcCCChHHH----HHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCC
Confidence 99999988 67899999999999954 555677899999999887778899999999987 8899999999999
Q ss_pred CcccccHHHHHHHHHhcCcEEEEeccccCCccc---CCC-CCCC-CcEEEecccCCCCCCc--eeEEEEeccccccCCCc
Q 012718 221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---VDV-QGLD-ADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 221 tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~---~~~-~~~~-~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~ 293 (458)
||.++|++++.++|+.+++++|+|++|+.+... ..+ +..+ .+++++|+||.+|++| +|++++++++++.+...
T Consensus 177 tG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~ 256 (369)
T 3cq5_A 177 TGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLV 256 (369)
T ss_dssp TCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHc
Confidence 999999999999999999999999999865532 222 3345 6799999999988667 79999998876655432
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
.. ..+++.....++..+++... .+++.+++++++++++.+.|++. ++++..+.
T Consensus 257 ~~-----------------------~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~- 309 (369)
T 3cq5_A 257 RL-----------------------PYHLSALSQAAAIVALRHSA--DTLGTVEKLSVERVRVAARLEEL-GYAVVPSE- 309 (369)
T ss_dssp SC-----------------------TTCSCHHHHHHHHHHHHTHH--HHHTHHHHHHHHHHHHHHHHHHH-TCEEECCS-
T ss_pred CC-----------------------CCCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHhC-CCEECCCC-
Confidence 11 12356666666666666422 26778888999999999999875 78876322
Q ss_pred CCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++++++.++ .+..++.+.|.++ ||.+++|. .++++|++++ +++|++++++.|+++++
T Consensus 310 ------~~~~~~~~~-~~~~~l~~~l~~~-gi~v~~~~-----------~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 310 ------SNFVFFGDF-SDQHAAWQAFLDR-GVLIRDVG-----------IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp ------SSEEEEECC-SSHHHHHHHHHHT-TEECBCCS-----------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred ------CeEEEEECC-CCHHHHHHHHHHC-CEEEEECC-----------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 678888886 4677899999877 99998761 2578999998 78999999999998875
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=273.67 Aligned_cols=339 Identities=14% Similarity=0.158 Sum_probs=249.8
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~~~v~~t~g 137 (458)
++++++|+.+... ..++.+.+++.+.+.... . + ++.......++++.+++++ |.+ ++++|++|+|
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~--~----~--~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g 107 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQRED--T----H--GYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIG 107 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC-----------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESC
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhCCC--C----C--CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCC
Confidence 4667899888765 467888888887764321 0 0 0111122456778888877 753 3138999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-C-CCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-E-SPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~-~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++|+.+++.++ +++||+|+++.++|++. ...++..|++++.++.+++ + .+|++.+++.+++++++|+++
T Consensus 108 ~~~a~~~~~~~~----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~ 179 (412)
T 2x5d_A 108 SKEGLAHLMLAT----LDHGDTILVPNPSYPIH----IYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILG 179 (412)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEEESCCHHH----HHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEE
T ss_pred hHHHHHHHHHHh----CCCCCEEEEcCCCchhH----HHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEEC
Confidence 999999999988 68999999999999954 4555667999999998865 3 368899999998889999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCCC----CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQG----LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+++||||.++| +++|+++|+++|+++|+|++|+.+.. +.++.. .+.|++++|+||.+|++| +|++++
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 259 (412)
T 2x5d_A 180 FPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVG 259 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEc
Confidence 99999999998 67899999999999999999986432 122222 357899999999988666 899999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+..... ....+.+.....++..+++...+ .++++.++++++++++.+.|++
T Consensus 260 ~~~~~~~l~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 317 (412)
T 2x5d_A 260 NPELVSALARIKS---------------------YHDYGTFTPLQVAAIAALEGDQQ-CVRDIARQYQQRRDVLVKGLRE 317 (412)
T ss_dssp CHHHHHHHHHHHH---------------------HHCCCCCHHHHHHHHHHHHSCSH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---------------------hhccCCCHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9887766553221 11235566566666555553221 2678888999999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC-CC---ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE-NI---HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~~---~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
+ ++++..+. .+.++++.++ +. +..++.+.|.+++||.+++|..|... .++++||+++. +++
T Consensus 318 ~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~------~~~~iRis~~~--~~~ 382 (412)
T 2x5d_A 318 A-GWMVENPK------ASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDY------GDDHVRFALIE--NRD 382 (412)
T ss_dssp H-TCCCCCCS------BSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGG------GTTEEEEECCS--CHH
T ss_pred C-CCEecCCC------eeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCC------CCCeEEEEecC--CHH
Confidence 7 66654332 1447888886 34 57789988865339999998766322 16799999995 899
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 012718 439 DVDEFIHALNETVSFFNV 456 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~~ 456 (458)
+++++++.|.+++++...
T Consensus 383 ~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 383 RLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999987654
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=272.60 Aligned_cols=336 Identities=14% Similarity=0.125 Sum_probs=255.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC--CCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN--ASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~~v~~t~g~t~a~ 142 (458)
++++.|..+... +.++.+.+++.+.+..... .++....+..+.+.+.+++.+| .+++ +|++|+|+++|+
T Consensus 61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~-------~y~~~~~~l~~~l~~~l~~~~g~~~~~~-~v~~~~g~~ea~ 132 (421)
T 3l8a_A 61 PELLQMWVADMDFLPVPEIKEAIINYGREHIF-------GYNYFNDDLYQAVIDWERKEHDYAVVKE-DILFIDGVVPAI 132 (421)
T ss_dssp TTCEECCSSCCCSCCCHHHHHHHHHHHHHCCS-------SCBCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESCHHHHH
T ss_pred CCeeecccCCCCCCCCHHHHHHHHHHHhcCCc-------CCCCCCHHHHHHHHHHHHHHhCCCCCHH-HEEEcCCHHHHH
Confidence 567777666544 6789999999998865211 1111125666778888888888 4443 899999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CC--CCCCHHHHHHhhc-CCceEEEEeccc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DD--ESPDLDKLKEMLS-RKTKLVVIHHIS 218 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~--~~~d~~~l~~~l~-~~~~~v~~~~~~ 218 (458)
+.++.++ .++||+|++..++|++ +...++..|.+++.+|++ .+ +.+|+++|+++++ +++++|++++++
T Consensus 133 ~~a~~~~----~~~gd~Vi~~~~~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~ 204 (421)
T 3l8a_A 133 SIALQAF----SEKGDAVLINSPVYYP----FARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPH 204 (421)
T ss_dssp HHHHHHH----SCTEEEEEEEESCCHH----HHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSB
T ss_pred HHHHHHh----cCCCCEEEECCCCcHH----HHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCC
Confidence 9999998 6889999999999995 455566779999999986 33 3579999999998 789999999999
Q ss_pred CcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCCC-----CCCcEEEecccCCCCCCc--eeEEEEe-
Q 012718 219 NMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQG-----LDADFLVASSHKMCGPTG--IGFLFGK- 283 (458)
Q Consensus 219 n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~-----~~~d~~~~s~~K~~gp~g--~G~l~~~- 283 (458)
||+|.+++ +++|+++|+++|+++|+|++|+... ....+.. .+.++++.|++|.+|+.| +|+++++
T Consensus 205 nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~ 284 (421)
T 3l8a_A 205 NPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQN 284 (421)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCS
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCC
Confidence 99999965 8899999999999999999998422 1111111 245688999999888666 7999998
Q ss_pred ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 284 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+++.+.+..... .+..++++...+.++.++++...++ ++++.++++++++++.+.|+++
T Consensus 285 ~~l~~~~~~~~~--------------------~~~~~~~n~~~~~a~~aal~~~~~~-~~~~~~~~~~~~~~l~~~L~~~ 343 (421)
T 3l8a_A 285 ESLRRKFQYRQL--------------------ANNQHEVPTVGMIATQAAFQYGKPW-LEELKTVIEGNIKLVIKELEAK 343 (421)
T ss_dssp HHHHHHHHHHHH--------------------HTTCSCCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------------hcccCCCCHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhC
Confidence 666655543221 1123467877778877777753332 6788899999999999999887
Q ss_pred CCEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 364 PNIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
+++++..+.. +.++|+.++. .+..++.+.|.+++||.+.+|..|... .++++||+++ +++++|+
T Consensus 344 ~~i~~~~~~~------~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~------~~~~iRi~~~--~~~~~i~ 409 (421)
T 3l8a_A 344 TKIKVMEPEG------TYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKE------GKYFARLNVA--TPKNTVQ 409 (421)
T ss_dssp CSCEEECCSB------SSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGG------GTTEEEEECC--SCHHHHH
T ss_pred CCceEeCCCe------eEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCC------CCCEEEEEec--CCHHHHH
Confidence 8888876541 3456688763 577889999875459999998765432 1689999999 6999999
Q ss_pred HHHHHHHHHHH
Q 012718 442 EFIHALNETVS 452 (458)
Q Consensus 442 ~l~~~l~~~~~ 452 (458)
+++++|.++++
T Consensus 410 ~~l~~l~~~l~ 420 (421)
T 3l8a_A 410 EALSRIISVFG 420 (421)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-33 Score=266.80 Aligned_cols=325 Identities=14% Similarity=0.167 Sum_probs=245.4
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
+++++|+.+... .+++.+.+++.+.+.....++. ...+++++++++++|++++ +|++|+|+++++.+
T Consensus 24 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~l~~~la~~~~~~~~-~v~~~~g~~~al~~ 91 (364)
T 1lc5_A 24 DQLLDFSANINPLGMPVSVKRALIDNLDCIERYPD-----------ADYFHLHQALARHHQVPAS-WILAGNGETESIFT 91 (364)
T ss_dssp GGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC-----------TTCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHH
T ss_pred cceEEeccccCCCCCCHHHHHHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHCcCHH-HEEECCCHHHHHHH
Confidence 457888887654 4678888888887644222111 1245899999999998765 99999999999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCC-HHHHHHhhcCCceEEEEecccCcCcc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPD-LDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d-~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
++.++ +||+|+++.++|++ +...++..|++++.++.+++..++ ++.+.+.+.+++++|++++++||||.
T Consensus 92 ~~~~~------~gd~vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~ 161 (364)
T 1lc5_A 92 VASGL------KPRRAMIVTPGFAE----YGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGL 161 (364)
T ss_dssp HHHHH------CCSEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCC
T ss_pred HHHHc------CCCeEEEeCCCcHH----HHHHHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCC
Confidence 99876 46999999999995 455667789999999987522233 46566667678899999999999999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCC-CCCCCCcEEEecccCCCCCCc--eeEEE-EeccccccCCC
Q 012718 224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVD-VQGLDADFLVASSHKMCGPTG--IGFLF-GKSDLLSAMPP 292 (458)
Q Consensus 224 ~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~-~~~~~~~~l~~ 292 (458)
++| +++|+++|+++|+++|+|++|+.+.. .++ +...+.++++.|+||++|++| +|+++ .++++++.+..
T Consensus 162 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~ 241 (364)
T 1lc5_A 162 LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRR 241 (364)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHH
Confidence 999 88999999999999999999985432 122 244568899999999988666 79999 88887665543
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
... ..+.+.....++..+++.. ..+++.+++++++++++.+.|++++++++..+.
T Consensus 242 ~~~-----------------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 296 (364)
T 1lc5_A 242 QQM-----------------------PWSVNALAALAGEVALQDS--AWQQATWHWLREEGARFYQALCQLPLLTVYPGR 296 (364)
T ss_dssp HSC-----------------------TTCSCHHHHHHHHHGGGCH--HHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCS
T ss_pred hCC-----------------------CCCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCC
Confidence 211 1245666666666666542 236788888999999999999988899875322
Q ss_pred CCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++++++.+++ +..++.+.|.++ ||.+++|..|... .++++||+++ +.+|++++++.|+++++
T Consensus 297 -------g~~~~~~~~~-~~~~l~~~l~~~-gi~v~~g~~~~~~------~~~~iRis~~---~~~~~~~l~~~l~~~~~ 358 (364)
T 1lc5_A 297 -------ANYLLLRCER-EDIDLQRRLLTQ-RILIRSCANYPGL------DSRYYRVAIR---SAAQNERLLAALRNVLT 358 (364)
T ss_dssp -------SSEEEEEESC-TTCCHHHHHHTT-TEECEECTTSTTC------CTTEEEEECC---CHHHHHHHHHHHHHHC-
T ss_pred -------CeEEEEECCC-cHHHHHHHHHHC-CcEEeeCcccCCC------CCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 6788888874 345788899988 9999998755321 2579999976 68999999999999987
Q ss_pred hhh
Q 012718 453 FFN 455 (458)
Q Consensus 453 ~~~ 455 (458)
+++
T Consensus 359 ~~~ 361 (364)
T 1lc5_A 359 GIA 361 (364)
T ss_dssp ---
T ss_pred ccc
Confidence 654
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=273.96 Aligned_cols=341 Identities=15% Similarity=0.186 Sum_probs=252.3
Q ss_pred CCeEEecCCCCC---CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~~v~~t~g~ 138 (458)
++++.|..+.+. .+++.+.+++.+.+...... ..++.......++++++++++ |.+..++|++|+|+
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~------~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~ 149 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADK------ALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGS 149 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHH------HHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSH
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHH------HhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcH
Confidence 567888777554 26778888888887652100 001111223447778888887 88322499999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc----C--CceEE
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----R--KTKLV 212 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~--~~~~v 212 (458)
++|+.+++.++ +++||+|+++.|+|++. ...++..|++++.++.++++ +|+++|++.++ + ++++|
T Consensus 150 ~~al~~~~~~l----~~~Gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v 220 (448)
T 3aow_A 150 QQALDLIGRVF----LNPGDIVVVEAPTYLAA----LQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVV 220 (448)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCHHH----HHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHH----cCCCCEEEEeCCChHHH----HHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEE
Confidence 99999999998 68999999999999954 55566779999999987765 79999999997 5 78887
Q ss_pred -EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cC---CCCCCCCcEEEecccCCCCCCc--eeE
Q 012718 213 -VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VV---DVQGLDADFLVASSHKMCGPTG--IGF 279 (458)
Q Consensus 213 -~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~---~~~~~~~d~~~~s~~K~~gp~g--~G~ 279 (458)
++++++||||.++| +++|.++|+++|++||+|++|+.... .. .++..+.++++.|++|.+| +| +||
T Consensus 221 ~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~ 299 (448)
T 3aow_A 221 YTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGW 299 (448)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEE
T ss_pred EECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEE
Confidence 57899999999998 56899999999999999999986432 11 2333357899999999888 67 899
Q ss_pred EEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHH
Q 012718 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-STIGMQKIHAYEMELAKYLYE 358 (458)
Q Consensus 280 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~g~~~~~~~~~~l~~~l~~ 358 (458)
+++++++++.+......+ ..+++.....++..+++.. ....+++++++++++++++.+
T Consensus 300 v~~~~~l~~~l~~~~~~~---------------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 358 (448)
T 3aow_A 300 MVGDPGIIRKMEIAKQST---------------------DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLE 358 (448)
T ss_dssp EEECHHHHHHHHHHHHHH---------------------HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHh---------------------cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999988877665332211 1133555555555555431 011267778888899999999
Q ss_pred HHhc-CC-CEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 359 NLLS-IP-NIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 359 ~L~~-~~-~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
.|++ +| ++++..+. .+.+++++++ +.+..++.+.|.++ ||.+.+|..|... -..++++|++++. .
T Consensus 359 ~L~~~~~~g~~~~~p~------~g~~~~v~~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~----~~~~~~iRls~~~-~ 426 (448)
T 3aow_A 359 ALEEFMPEGVKWTKPE------GGMFIWVTLPDGIDSKKMLERAIKK-GVAYVPGEAFYAH----RDVKNTMRLNFTY-V 426 (448)
T ss_dssp HHHHHCCTTCEECCCS------BSSEEEEECSTTCCHHHHHHHHHHT-TEECEEGGGGSTT----CCCCSEEEEECSS-S
T ss_pred HHHHhCCCCeEEeCCC------ccEEEEEEcCCCCCHHHHHHHHHHC-CcEEEcchhhcCC----CCCCCEEEEEeCC-C
Confidence 9986 56 68876543 1568899987 45778899999999 9999998754321 0126799999986 4
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 012718 436 TKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~~ 455 (458)
++++|++++++|.+++++..
T Consensus 427 ~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 427 DEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp CTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998654
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=277.52 Aligned_cols=340 Identities=16% Similarity=0.221 Sum_probs=251.8
Q ss_pred CCeEEecCCCCC---CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
+++++|+.+... .+++.+.+++.+.+........ ++.......++++.+++++|++++ +|++|+|+++++
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~------~y~~~~~~~~l~~~la~~~g~~~~-~v~~~~g~~~al 104 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKGEVAL------QYSPTEGYAPLRAFVAEWIGVRPE-EVLITTGSQQAL 104 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHT------SCCCTTCCHHHHHHHHHHHTSCGG-GEEEESHHHHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhh------CCCCCCCCHHHHHHHHHHhCCChh-hEEEeccHHHHH
Confidence 567899877544 2678888998888765211000 001112345899999999997655 999999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEE-EEecccCc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLV-VIHHISNM 220 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v-~~~~~~n~ 220 (458)
.+++.++ +++||+|+++.++|++. ...++..|++++.++.++++ +|++++++.+++ ++++| ++++++||
T Consensus 105 ~~~~~~~----~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~np 175 (397)
T 2zyj_A 105 DLVGKVF----LDEGSPVLLEAPSYMGA----IQAFRLQGPRFLTVPAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNP 175 (397)
T ss_dssp HHHHHHH----CCTTCEEEEEESCCHHH----HHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHCCCSCEEECCBSCTT
T ss_pred HHHHHHh----CCCCCEEEEeCCCcHHH----HHHHHHcCCEEEecCcCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCC
Confidence 9999988 67899999999999954 55566779999999987665 799999999986 78887 57999999
Q ss_pred CcccccH---HHHHHHHHhcCcEEEEeccccCCcc----cCCCCCC------CCcEEEecccCCCCCCc--eeEEEEecc
Q 012718 221 LASILPI---EEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGL------DADFLVASSHKMCGPTG--IGFLFGKSD 285 (458)
Q Consensus 221 tG~~~~l---~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~~------~~d~~~~s~~K~~gp~g--~G~l~~~~~ 285 (458)
||.++|. ++|+++|+++|+++|+|++|+.... +.++..+ +.+++++|+||++| +| +|+++++++
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~ 254 (397)
T 2zyj_A 176 TGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPE 254 (397)
T ss_dssp TCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHH
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHH
Confidence 9999985 4899999999999999999986432 2222222 23488999999888 55 899999988
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IP 364 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~-~~ 364 (458)
+++.+......+ ..++ +.....++..+++......++++.++++++++++.+.|++ ++
T Consensus 255 ~~~~l~~~~~~~--------------------~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 313 (397)
T 2zyj_A 255 ALQKLVQAKQGA--------------------DLHT-PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVP 313 (397)
T ss_dssp HHHHHHHHHHHH--------------------HSSC-CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhh--------------------cCCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 776665332211 1223 4444555555554321012677788888999999999976 56
Q ss_pred -CEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 365 -NIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 365 -~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
++++..+. .+.++++.++ +.+..++.+.|.++ ||.+.+|..|.... ..++++||+++.. +++|+++
T Consensus 314 ~g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~----~~~~~iRis~~~~-~~~~i~~ 381 (397)
T 2zyj_A 314 KEVRYTRPK------GGMFVWMELPKGLSAEGLFRRALEE-NVAFVPGGPFFANG----GGENTLRLSYATL-DREGIAE 381 (397)
T ss_dssp TTSEECCCS------BSSEEEEECSTTCCHHHHHHHHHHT-TEEEEESGGGCTTS----CCTTEEEEECSSS-CHHHHHH
T ss_pred CCeEEccCC------ccEEEEEEcCCCCCHHHHHHHHHHC-CCEEechHHhcCCC----CCCCeEEEEcCCC-CHHHHHH
Confidence 58776543 1568899987 45678899999998 99999887543210 1267999999974 8999999
Q ss_pred HHHHHHHHHHhhh
Q 012718 443 FIHALNETVSFFN 455 (458)
Q Consensus 443 l~~~l~~~~~~~~ 455 (458)
++++|.++++++.
T Consensus 382 ~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 382 GVRRLGRALKGLL 394 (397)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=268.88 Aligned_cols=339 Identities=14% Similarity=0.120 Sum_probs=242.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccC-CCCCcchhhhHHHHHHHHHHHHHHHHcC--CCCCCcEEEeCChhHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSN-VHRGIHFLSAKATDEYELARKKVAAFIN--ASDSGEIVFTKNATEA 141 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~~v~~t~g~t~a 141 (458)
++++.|..+... ++++.+.+++.+.+...... ... +....+..+..+.+.+.+.+.+| +++ ++|++|+|+++|
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--y~~~~g~~~lr~~la~~l~~~~g~~~~~-~~i~~~~g~~~a 111 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHG--YTSAQGDVETRAAIAEFLNNTHGTHFNA-DNLYMTMGAAAS 111 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHS--CCCTTCCHHHHHHHHHHHHHHHCCCCCG-GGEEEESSHHHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCC--cCCCCCcHHHHHHHHHHHHHHhCCCCCh-HHEEEccCHHHH
Confidence 567889888665 57889999999988762100 000 00001112333333344444445 344 499999999999
Q ss_pred HHHHHHHcCCCCCCCC-CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 142 INLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
+..++.++ +++| |+|+++.++|++ +...++..|++++.+++++ ++.+|++++++.+++++++|++++++|
T Consensus 112 l~~~~~~l----~~~g~d~vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~n 183 (398)
T 3ele_A 112 LSICFRAL----TSDAYDEFITIAPYFPE----YKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNN 183 (398)
T ss_dssp HHHHHHHH----CCSTTCEEEEESSCCTH----HHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCT
T ss_pred HHHHHHHH----cCCCCCEEEEeCCCchh----hHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCC
Confidence 99999998 6899 999999999994 4566677899999999985 467899999999999999999999999
Q ss_pred cCccccc---HHHHHHHHHh------cCcEEEEeccccCCc-----ccCCCCCCCCcEEEecccCCCCCCc--eeEEEEe
Q 012718 220 MLASILP---IEEIVHWSHD------VGAKVLVDACQSVPH-----MVVDVQGLDADFLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 220 ~tG~~~~---l~~i~~l~~~------~~~~vivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
|||.++| +++|+++|++ +|+++|+|++|+... .+......+.++++.|+||.+|++| +|+++++
T Consensus 184 ptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 263 (398)
T 3ele_A 184 PSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVP 263 (398)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEc
Confidence 9999999 6677799998 999999999998522 2222234457899999999888666 9999999
Q ss_pred ccccccC--CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Q 012718 284 SDLLSAM--PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 284 ~~~~~~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
+++++.. ........ ......+++.....++...+ ... ...++++++++++.+.|+
T Consensus 264 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~a~~~~l---~~~---~~~~~~~~~~~~l~~~L~ 321 (398)
T 3ele_A 264 DEVYDKAELYAAVCGAG----------------RALGYVCAPSLFQKMIVKCQ---GAT---GDINAYKENRDLLYEGLT 321 (398)
T ss_dssp TTSTTHHHHHHHHHHHH----------------HHTTCCCSCHHHHHHHTTCT---TCC---CCHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHh----------------hhccccCCCHHHHHHHHHHh---cCH---HHHHHHHHHHHHHHHHHH
Confidence 8865421 10000000 00011233433333333222 221 135677788888888888
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
++ ++++..+. .+.++++.+++.+..++.+.|.++ ||.+++|..| +.++++|++++ +++++++
T Consensus 322 ~~-g~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~--------~~~~~iRis~~--~~~e~i~ 383 (398)
T 3ele_A 322 RI-GYHCFKPD------GAFYMFVKALEDDSNAFCEKAKEE-DVLIVAADGF--------GCPGWVRISYC--VDREMIK 383 (398)
T ss_dssp HH-TCCEECCS------BSSEEEEECSSSCHHHHHHHHHTT-TEECEESGGG--------TCTTEEEEECC--SCHHHHH
T ss_pred Hc-CCeecCCC------eeEEEEEEcCCCCHHHHHHHHHHC-CEEEeCcccc--------CCCCeEEEEec--CCHHHHH
Confidence 76 77766554 144689998876788999999888 9999998754 33679999997 7999999
Q ss_pred HHHHHHHHHHHhhh
Q 012718 442 EFIHALNETVSFFN 455 (458)
Q Consensus 442 ~l~~~l~~~~~~~~ 455 (458)
+++++|.+++++++
T Consensus 384 ~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 384 HSMPAFEKIYKKYN 397 (398)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=269.04 Aligned_cols=332 Identities=15% Similarity=0.144 Sum_probs=248.0
Q ss_pred CeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 67 KLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 67 ~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.++.|..+.. + ++++.+.+++.+.+....... .............+++++.+++++|.+ +.+++++||+++..
T Consensus 40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~~~ 114 (384)
T 1bs0_A 40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGS--GGSGHVSGYSVVHQALEEELAEWLGYS---RALLFISGFAANQA 114 (384)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCC--CSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHH
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCC--CCcCcccCChHHHHHHHHHHHHHhCCC---cEEEeCCcHHHHHH
Confidence 3455555442 4 478899999999887642211 111111123466778999999999985 56666777999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC---ceEEEEecccCcC
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK---TKLVVIHHISNML 221 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~v~~~~~~n~t 221 (458)
++.++ .++||.|+++.+.|.+. ...++..|++++.+|. .|++++++.+++. +++|++++++|||
T Consensus 115 ~~~~~----~~~gd~v~~~~~~~~~~----~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~npt 181 (384)
T 1bs0_A 115 VIAAM----MAKEDRIAADRLSHASL----LEAASLSPSQLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMD 181 (384)
T ss_dssp HHHHH----CCTTCEEEEETTCCHHH----HHHHHTSSSEEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTT
T ss_pred HHHHh----CCCCcEEEEcccccHHH----HHHHHHcCCCEEEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 99987 68999999999999954 4445567999999985 3889999988763 7899999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCccc------CCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccc
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMV------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~------~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~ 295 (458)
|.+.|+++|.++|+++|+++|+|++|+.+... .+....++|++++|+||++|+.| |++++++++++.+.....
T Consensus 182 G~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~ 260 (384)
T 1bs0_A 182 GDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFAR 260 (384)
T ss_dssp CCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCH
T ss_pred CCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC-cEEEeCHHHHHHHHHhch
Confidence 99999999999999999999999999866431 11112358999999999999887 999999887665543211
Q ss_pred cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE 375 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~ 375 (458)
.+. ...+++.....++.++++.+.+...+++.++++++++++.+.|+++ ++++....
T Consensus 261 ~~~-------------------~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~--- 317 (384)
T 1bs0_A 261 HLI-------------------YSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLADSC--- 317 (384)
T ss_dssp HHH-------------------SSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECSCC---
T ss_pred hhh-------------------cCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCcccCCC---
Confidence 110 0125677777777788887763225788899999999999999988 77775321
Q ss_pred cCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 376 HVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 376 ~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
++++++.++. .+..++.+.|.++ ||.++++..+..+ ...+++|++++.+++++|+++++++|+++
T Consensus 318 ----~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~-----~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 318 ----SAIQPLIVGDNSRALQLAEKLRQQ-GCWVTAIRPPTVP-----AGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp ----SSBCCEEEESHHHHHHHHHHHHHT-TEECCEECTTSSC-----TTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred ----CCEEEEEeCCHHHHHHHHHHHHHC-CcEEEeecCCCCC-----CCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 5677777753 3467899999988 9999987643211 11478999999888999999999999864
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=273.12 Aligned_cols=342 Identities=18% Similarity=0.181 Sum_probs=265.3
Q ss_pred CcHHHHHHHHHHHHHhcc-CCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCChhHHHHHHHHHcCCCC-CC
Q 012718 79 KPIAVLKALQNYYEAYNS-NVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAINLVAYSWGLSN-LK 155 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~a~~~~~~~l~~~~-~~ 155 (458)
.++.+.+++.+.+..... ++. .+.......+..+++++.+++++|.+ ..+++++++|+|+|+.+++.++.... .+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQL--HPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhcCCC--CcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 346777777777765321 221 12222345677778999999999998 33489999999999999998872100 00
Q ss_pred CC---CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHH
Q 012718 156 SG---DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 156 ~g---~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
+| ++|+++.+.|.+ +...++..|++++.+++++ ++.+|+++|++++++++++|++++++||||.+.|+++|.
T Consensus 154 ~g~~~~~Vi~~~~~h~~----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~ 229 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAG----FDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLG 229 (497)
T ss_dssp SCCSSCEEEEETTSCHH----HHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTT
T ss_pred CCCCCceEEEeCCccHH----HHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHH
Confidence 23 799999999995 4666777899999999987 788999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEeccccCCc-----------c-cCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccCCCccc-cC
Q 012718 232 HWSHDVGAKVLVDACQSVPH-----------M-VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLG-GG 297 (458)
Q Consensus 232 ~l~~~~~~~vivD~a~~~g~-----------~-~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~-g~ 297 (458)
++|+++|+++|+|++|+.+. . +++....++|++++|+||+ ++|.|+|+++++++.+........ .+
T Consensus 230 ~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 309 (497)
T 3mc6_A 230 KIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAW 309 (497)
T ss_dssp THHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTC
T ss_pred HHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccc
Confidence 99999999999999998332 2 3556667899999999995 688899999998876544432111 00
Q ss_pred cceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCCCc
Q 012718 298 EMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IPNIRIYGPKPSEH 376 (458)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~ 376 (458)
.. ..+ ......|+.+....+++.++++.+...+++++.++..++++++.+.|.+ ++++++..++.
T Consensus 310 ~~--------~~~---~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~--- 375 (497)
T 3mc6_A 310 TG--------GLY---GSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPR--- 375 (497)
T ss_dssp TT--------SCB---CCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCC---
T ss_pred cC--------CCc---CCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC---
Confidence 00 000 0111245666677888889999988888899999999999999999999 69999876532
Q ss_pred CccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 377 VQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 377 ~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+++++|..++.+..++.+.|.++ ||.++.+.. +..+|+++. .++.+|++++++.|+++++++++
T Consensus 376 ---~~~v~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~-----------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 376 ---YSVISFSSKTLNIHELSDRLSKK-GWHFNALQK-----------PVALHMAFT-RLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp ---SSEEEEECTTTTHHHHHHHHHTT-TCBCEECCS-----------SCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTC
T ss_pred ---eeEEEEeCCCCCHHHHHHHHHhC-CEEEecCCC-----------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 67888988877889999999998 998875432 346899998 58999999999999999987654
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=270.42 Aligned_cols=334 Identities=15% Similarity=0.136 Sum_probs=250.6
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHh--ccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC--CCCcEEEe
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAY--NSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFT 135 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~~~v~~t 135 (458)
++++++|+.+... ..++.+.+++.+.+... ..++. .....++++++++++ |.+ +.++|++|
T Consensus 46 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t 115 (404)
T 2o1b_A 46 PLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGA----------FHGKEAFKQAIVDFYQRQYNVTLDKEDEVCIL 115 (404)
T ss_dssp SSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCC----------TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred CCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCC----------CCCCHHHHHHHHHHHHHHhCCCCCCcccEEEc
Confidence 3567889888665 45788888888876421 11111 122346777777777 875 21489999
Q ss_pred CChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEE
Q 012718 136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVI 214 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~ 214 (458)
+|+++|+.+++.++ +++||+|+++.++|++. ...++..|++++.++.+++ ..+|++++++.+++++++|++
T Consensus 116 ~G~~~al~~~~~~l----~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l 187 (404)
T 2o1b_A 116 YGTKNGLVAVPTCV----INPGDYVLLPDPGYTDY----LAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYL 187 (404)
T ss_dssp SSHHHHHHHHHHHH----CCTTCEEEEEESCCSSH----HHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEE
T ss_pred CCcHHHHHHHHHHh----cCCCCEEEEcCCCchhH----HHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEE
Confidence 99999999999998 67899999999999965 4455667999999998764 457999999988778899999
Q ss_pred ecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCCC----CCcEEEecccCCCCCCc--eeEEEE
Q 012718 215 HHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQGL----DADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 215 ~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~~----~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
++++||||.++| +++|+++|+++|+++|+|++|+.... +.++... +.+++++|+||++|++| +|++++
T Consensus 188 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (404)
T 2o1b_A 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG 267 (404)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEec
Confidence 999999999997 67899999999999999999986432 2222222 46799999999998667 799999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+...... ..++.+.....++..+++.. ...+++++++++++++++.+.|++
T Consensus 268 ~~~~~~~l~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 325 (404)
T 2o1b_A 268 NKDMIQALKKYQTH---------------------TNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAK 325 (404)
T ss_dssp CHHHHHHHHHHHHH---------------------HCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh---------------------ccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98877666533221 12355666666666666542 223678888899999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
+ ++++..+. .+.++++.++ +.+..++.+.|. ++ ||.+++|..|... .++++||+++. +++++
T Consensus 326 ~-g~~~~~~~------~g~~~~~~~~~~~~~~~l~~~l~~~~-gi~v~~g~~f~~~------~~~~iRis~~~--~~e~l 389 (404)
T 2o1b_A 326 A-DLPFVHAK------GGIYVWLETPPGYDSEQFEQFLVQEK-SILVAPGKPFGEN------GNRYVRISLAL--DDQKL 389 (404)
T ss_dssp T-TCCEECCC------BSSEEEEECCTTCCHHHHHHHHHHHH-CEECEESGGGCGG------GTTEEEEECCS--CTTHH
T ss_pred c-CCeecCCC------cceEEEEeCCCCCCHHHHHHHHHHHC-CEEEeCchhhCcC------CCCeEEEEEcC--CHHHH
Confidence 7 77776543 1346888887 456778888877 46 9999998765421 26799999995 78899
Q ss_pred HHHHHHHHHHHHhh
Q 012718 441 DEFIHALNETVSFF 454 (458)
Q Consensus 441 ~~l~~~l~~~~~~~ 454 (458)
++++++|.+++++.
T Consensus 390 ~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 390 DEAAIRLTELAYLY 403 (404)
T ss_dssp HHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999888653
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=271.89 Aligned_cols=356 Identities=19% Similarity=0.248 Sum_probs=255.3
Q ss_pred hhhcCCCCcccccc-c-CCCCe-EEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc
Q 012718 49 HITRPDFPILHQEV-Y-GSKKL-VYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI 124 (458)
Q Consensus 49 ~~~r~~f~~~~~~~-~-~~~~~-i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 124 (458)
+.+|+.||.+.... + +++++ .|+++...+ +.++.+.+++.+++.....+++. +...+...+..+++++.+++++
T Consensus 27 ~~~~~~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~ 104 (401)
T 2bwn_A 27 EREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLH 104 (401)
T ss_dssp EECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHT
T ss_pred hcccccccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHh
Confidence 34688999875321 1 12333 455444433 24567999999998875544331 1222233466778999999999
Q ss_pred CCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHh
Q 012718 125 NASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM 204 (458)
Q Consensus 125 g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~ 204 (458)
|.+ ++|++++|++ ++..++..+. .+.+||.|+++.++|++.... ++..|++++.++.+ |++++++.
T Consensus 105 ~~~--~~i~~~sG~~-a~~~~~~~l~--~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~-----d~~~le~~ 170 (401)
T 2bwn_A 105 QKE--AALVFSSAYN-ANDATLSTLR--VLFPGLIIYSDSLNHASMIEG----IKRNAGPKRIFRHN-----DVAHLREL 170 (401)
T ss_dssp TCS--EEEEESCHHH-HHHHHHHHHH--HHSTTCEEEEETTCCHHHHHH----HHHSCCCEEEECTT-----CHHHHHHH
T ss_pred CCC--cEEEECCcHH-HHHHHHHHHh--cCCCCCEEEECchhhHHHHHH----HHHcCCeEEEEcCC-----CHHHHHHH
Confidence 974 3777766655 7777766541 135899999999999976544 35579999999875 78888888
Q ss_pred hc----CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC------CCCC--CCcEEEecccCCC
Q 012718 205 LS----RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD------VQGL--DADFLVASSHKMC 272 (458)
Q Consensus 205 l~----~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~------~~~~--~~d~~~~s~~K~~ 272 (458)
++ +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.|..... .... +.|++++|++|.+
T Consensus 171 l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~ 250 (401)
T 2bwn_A 171 IAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY 250 (401)
T ss_dssp HHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTT
T ss_pred HHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhc
Confidence 86 5789999999999999999999999999999999999999996543110 0111 3589999999999
Q ss_pred CCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 012718 273 GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 273 gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l 352 (458)
|..| |+++.++++++.+.....+ ..+..++++ ..++++.++++++.+.+++++.++++++
T Consensus 251 ~~~G-G~~~~~~~~~~~l~~~~~~------------------~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~ 310 (401)
T 2bwn_A 251 GVFG-GYIAASARMVDAVRSYAPG------------------FIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMH 310 (401)
T ss_dssp CSCC-EEEEECHHHHHHHHHHCHH------------------HHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cCCC-CEEecCHHHHHHHHHhCcC------------------ceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 8766 8998887665543321110 123334544 6677778888888776678999999999
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 353 AKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 353 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
++++.+.|+++ ++++..+. ++++++.++. .+..++.+.|. ++ ||.++++..+..+ ...+++|++
T Consensus 311 ~~~l~~~L~~~-g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~~~~-gi~v~~~~~~~~~-----~~~~~iRis 376 (401)
T 2bwn_A 311 AKVLKMRLKAL-GMPIIDHG-------SHIVPVVIGDPVHTKAVSDMLLSDY-GVYVQPINFPTVP-----RGTERLRFT 376 (401)
T ss_dssp HHHHHHHHHHH-TCCBCCCS-------SSCEEEECCCHHHHHHHHHHHHHHH-CEECCEECTTTSC-----TTCCEEEEC
T ss_pred HHHHHHHHHHC-CCcccCCC-------CCeEEEEeCChHHHHHHHHHHHhcC-CEEEeecCCCCCC-----CCCceEEEE
Confidence 99999999887 77765432 5688998864 45667888885 66 9999887632111 013589999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 431 LHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
++.+++++|+++++++|+++++++
T Consensus 377 ~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 377 PSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp CCTTSCHHHHHHHHHHHHHHC---
T ss_pred eeCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987653
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=265.89 Aligned_cols=334 Identities=13% Similarity=0.134 Sum_probs=246.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHH-HHHHHHHHc----C--CCCCCcEEEeCC
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYEL-ARKKVAAFI----N--ASDSGEIVFTKN 137 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~----g--~~~~~~v~~t~g 137 (458)
+++++|..+..+ ++++.+.+++.+.+... . ..+.. . ..+ +++++++++ | .++ ++|++|+|
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~--~~y~~--~----~~~~lr~~la~~l~~~~g~~~~~-~~v~~t~g 95 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMHG---V--FGYSR--W----KNDEFLAAIAHWFSTQHYTAIDS-QTVVYGPS 95 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTTC---C--CCCCC--S----CCHHHHHHHHHHHHHHSCCCCCG-GGEEEESC
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhCC---C--CCCCC--C----ChHHHHHHHHHHHHHhcCCCCCH-HHEEEcCC
Confidence 467888877664 57889999998887531 0 00110 1 234 666666665 5 444 38999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCC---CCCHHHHHHhhcC-CceEEE
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE---SPDLDKLKEMLSR-KTKLVV 213 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~---~~d~~~l~~~l~~-~~~~v~ 213 (458)
+++++.+++.++ .++||+|+++.++|++. ...++..|++++.+|.++++ .+|++++++.+++ ++++|+
T Consensus 96 ~~~al~~~~~~l----~~~gd~vl~~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~ 167 (390)
T 1d2f_A 96 VIYMVSELIRQW----SETGEGVVIHTPAYDAF----YKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIML 167 (390)
T ss_dssp HHHHHHHHHHHS----SCTTCEEEEEESCCHHH----HHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHHHHh----cCCCCEEEEcCCCcHHH----HHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEE
Confidence 999999999988 67899999999999954 55566779999999987542 4799999999986 789999
Q ss_pred EecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCCCCCCC---cEEEecccCCCCCCc--eeEEE
Q 012718 214 IHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGLDA---DFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 214 ~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~~~~---d~~~~s~~K~~gp~g--~G~l~ 281 (458)
+++++||||.++| +++|+++|+++|+++|+|++|+.... ..++..+.. |. +.|+||.+|++| +|+++
T Consensus 168 l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~ 246 (390)
T 1d2f_A 168 LCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGI 246 (390)
T ss_dssp EESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEE
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEE
Confidence 9999999999998 78999999999999999999986332 223222222 67 999999888777 79999
Q ss_pred Ee-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 012718 282 GK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360 (458)
Q Consensus 282 ~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L 360 (458)
++ +++++.+.....+ .+..++++...+.++.++++...+ .+++.+++++++++++.+.|
T Consensus 247 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L 306 (390)
T 1d2f_A 247 IENSSSRDAYLSALKG-------------------RDGLSSPSVLALTAHIAAYQQGAP-WLDALRIYLKDNLTYIADKM 306 (390)
T ss_dssp ECSHHHHHHHHHHHHT-------------------TSCCCSCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHhh-------------------hcccCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 96 4665554432210 011246677777777677764322 26788889999999999999
Q ss_pred hc-CCCEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCH
Q 012718 361 LS-IPNIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437 (458)
Q Consensus 361 ~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~ 437 (458)
++ +|++++..+. .+.++++.++. .+..++.+.|.+++||.+++|..|... .++++||+++. ++
T Consensus 307 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~------~~~~~Ris~~~--~~ 372 (390)
T 1d2f_A 307 NAAFPELNWQIPQ------STYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEE------GRGFVRLNAGC--PR 372 (390)
T ss_dssp HHHCSSCCCCCCS------BCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGG------GTTEEEEECCS--CH
T ss_pred HhhCCCCEEecCC------ccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCC------CCCeEEEEecC--CH
Confidence 88 7787665433 13466788864 577889999984339999998765421 26799999995 68
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012718 438 EDVDEFIHALNETVSFF 454 (458)
Q Consensus 438 ~di~~l~~~l~~~~~~~ 454 (458)
+++++++++|.++++++
T Consensus 373 ~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 373 SKLEKGVAGLINAIRAV 389 (390)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=271.37 Aligned_cols=339 Identities=17% Similarity=0.174 Sum_probs=249.3
Q ss_pred CCeEEecCCCCC---CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeC
Q 012718 66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTK 136 (458)
Q Consensus 66 ~~~i~l~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~ 136 (458)
.++++|+.+... .+++.+.+++.+.+....... . + .......++++.+++++ |. ++ ++|++|+
T Consensus 34 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~--~-y----~~~~~~~~l~~~la~~~~~~~g~~~~~-~~v~~t~ 105 (407)
T 2zc0_A 34 VKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSV--M-Y----TPANGIPELREELAAFLKKYDHLEVSP-ENIVITI 105 (407)
T ss_dssp CCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGG--S-C----CCTTCCHHHHHHHHHHHHHHSCCCCCG-GGEEEES
T ss_pred CceEeCCCCCCCchhCCHHHHHHHHHHHHhhccccc--c-C----CCCCCCHHHHHHHHHHHHHhcCCCCCc-ceEEEec
Confidence 467888776543 367788899988887532110 0 1 11122346777777777 84 34 4999999
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc----C--Cce
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----R--KTK 210 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~--~~~ 210 (458)
|+|+|+.+++.++ +++||+|+++.++|++. ...++..|++++.++.++++ +|++++++.++ + +++
T Consensus 106 g~t~a~~~~~~~~----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~ 176 (407)
T 2zc0_A 106 GGTGALDLLGRVL----IDPGDVVITENPSYINT----LLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVK 176 (407)
T ss_dssp HHHHHHHHHHHHH----CCTTCEEEEEESCCHHH----HHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHh----cCCCCEEEEeCCChHHH----HHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCce
Confidence 9999999999998 67899999999999954 55566779999999987665 79999999997 6 788
Q ss_pred EE-EEecccCcCcccccHH---HHHHHHHhcCcEEEEeccccCCcc----cCCC---CCCCCcEEEecccCCCCCCc--e
Q 012718 211 LV-VIHHISNMLASILPIE---EIVHWSHDVGAKVLVDACQSVPHM----VVDV---QGLDADFLVASSHKMCGPTG--I 277 (458)
Q Consensus 211 ~v-~~~~~~n~tG~~~~l~---~i~~l~~~~~~~vivD~a~~~g~~----~~~~---~~~~~d~~~~s~~K~~gp~g--~ 277 (458)
+| ++++++||||.++|.+ +|+++|+++|+++|+|++|+.+.. ...+ ...+.+++++|+||++| +| +
T Consensus 177 ~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~ 255 (407)
T 2zc0_A 177 LIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRI 255 (407)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCC
T ss_pred EEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcce
Confidence 87 5889999999999976 999999999999999999986432 1122 22246689999999888 55 8
Q ss_pred eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-HH-hCHHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-ST-IGMQKIHAYEMELAKY 355 (458)
Q Consensus 278 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~-~g~~~~~~~~~~l~~~ 355 (458)
|++++++++++.+......+ .. +.+.....++..+++.. .. ..++++++++++++++
T Consensus 256 G~~~~~~~~~~~~~~~~~~~--------------------~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (407)
T 2zc0_A 256 GWIIAEGEILKKVLMQKQPI--------------------DF-CAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDI 314 (407)
T ss_dssp EEEECCHHHHHHHHHHHTTT--------------------TS-SSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHHHHhh--------------------cC-CCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 99999987766654332211 11 23444455555555532 11 3466788888999999
Q ss_pred HHHHHhc-CCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC
Q 012718 356 LYENLLS-IPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF 433 (458)
Q Consensus 356 l~~~L~~-~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~ 433 (458)
+.+.|++ .+++++..+. .+.++++.++ +.+..++.+.|.+++||.+++|..|.... ..++++|++++.
T Consensus 315 l~~~L~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~----~~~~~iRis~~~ 384 (407)
T 2zc0_A 315 MLKALENHLPNAEFTKPI------AGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDE----SGKNAIRLNFSR 384 (407)
T ss_dssp HHHHHHHHCTTSCBCCCS------BSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSS----CCTTEEEEECSS
T ss_pred HHHHHHHhCCCCEEecCC------CcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCC----CCCCeEEEEeCC
Confidence 9999976 4676654433 1558899986 46778899999887799999987553210 125799999997
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 012718 434 YNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~~~~ 454 (458)
. +++|+++++++|.++++++
T Consensus 385 ~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 385 P-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp S-CTTHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHH
Confidence 5 8899999999999998765
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=273.49 Aligned_cols=340 Identities=19% Similarity=0.179 Sum_probs=247.7
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCC-cEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSG-EIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~-~v~~t~g~ 138 (458)
.++++|+.+... +.++.+.+++.+.+... . ..+.. .....++++.+++++ |.+ ..+ +|++|+|+
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~--~~y~~----~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~ 95 (411)
T 2o0r_A 25 IGAVNLGQGFPDEDGPPKMLQAAQDAIAGG---V--NQYPP----GPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGA 95 (411)
T ss_dssp TTCEESSCSSCSSCCCHHHHHHHHHHHHTT---C--CSCCC----TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHH
T ss_pred CCeeeccCcCCCCCCCHHHHHHHHHHHhcC---C--CCCCC----CCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCH
Confidence 457899888766 57788999999888641 0 01110 111234555666554 754 234 89999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC---CCCCHHHHHHhhcCCceEEEEe
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD---ESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~---~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
++|+.+++.++ +++||+|+++.++|++. ...++..|++++.++.+++ +.+|++++++.+++++++|+++
T Consensus 96 ~~al~~~~~~~----~~~gd~Vl~~~~~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~ 167 (411)
T 2o0r_A 96 TEAIAAAVLGL----VEPGSEVLLIEPFYDSY----SPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIIN 167 (411)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEE
T ss_pred HHHHHHHHHHh----cCCCCEEEEeCCCcHhH----HHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEe
Confidence 99999999988 67899999999999964 4455677999999998753 5689999999998899999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCC---CCC-CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVD---VQG-LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~---~~~-~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+++||||.++| +++|+++|+++|+++|+|++|+.+.. +.. +.. .+.|++++|+||.+|++| +|++++
T Consensus 168 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 247 (411)
T 2o0r_A 168 SPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACG 247 (411)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEee
Confidence 99999999998 58999999999999999999985432 112 221 457999999999988778 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+..... +...+.+.....++..+++... ..+++++++++++++++.+.|++
T Consensus 248 ~~~~~~~l~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~ 305 (411)
T 2o0r_A 248 PAELIAGVRAAKQ---------------------YLSYVGGAPFQPAVALALDTED-AWVAALRNSLRARRDRLAAGLTE 305 (411)
T ss_dssp CHHHHHHHHHHHH---------------------HHTSCCCTTHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---------------------hccCCCChHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887665543221 0012233334455556665432 23678889999999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHh-hhcCeEeccCCCCChhh----HhhcC-CCCeEEEeeCC
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLD-QQYGVATRSGHHCAQPL----HRYLG-VNASARASLHF 433 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~-~~~gi~~~~g~~~~~~~----~~~~g-~~~~lRis~~~ 433 (458)
. ++++..+. .+.++++.++. .+..++.+.|. ++ ||.+.+|..|.... +.... .++++||+++
T Consensus 306 ~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~l~~~~-gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~- 376 (411)
T 2o0r_A 306 I-GFAVHDSY------GTYFLCADPRPLGYDDSTEFCAALPEKV-GVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC- 376 (411)
T ss_dssp H-TCEECCCC------BSSEEEEECGGGTCCCHHHHHHHHHHHH-SEECEEGGGGSCCC--------CCGGGCEEEECC-
T ss_pred c-CCEecCCC------eeEEEEEecCCCCCCCHHHHHHHHHHhC-CEEEcChhhhCCCccccccccccCCCCeEEEEec-
Confidence 7 88876543 14488998874 45778888876 56 99999887552110 00000 1468999997
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 012718 434 YNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++|+++++++|.+++++.
T Consensus 377 -~~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 377 -KRDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp -SCHHHHHHHHHHHGGGGC--
T ss_pred -CCHHHHHHHHHHHHHHHhcc
Confidence 58999999999999887654
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=269.90 Aligned_cols=329 Identities=14% Similarity=0.126 Sum_probs=244.8
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
++++||+++..+++++.+.+++.+.+..+. .+....+..+++++.+++++|.+++ +|++|+|+|+|+..+
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~~~~~~---------~~~g~~~~~~~~~~~l~~~~g~~~~-~v~~~~g~t~a~~~~ 82 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARDNMTQH---------AGYGQDSHCAKAARLIGELLERPDA-DVHFISGGTQTNLIA 82 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHHTTCCC---------CSTTCSHHHHHHHHHHHHHHTCTTS-EEEEESCHHHHHHHH
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHHHhhcc---------ccccccHHHHHHHHHHHHHhCCCCc-cEEEeCCchHHHHHH
Confidence 557999999988999999999988764211 0112346677899999999998765 899999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC-------ceEEEEeccc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK-------TKLVVIHHIS 218 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-------~~~v~~~~~~ 218 (458)
+.++ .++||+|++++++|++.... ..++..|++++.++.+ ++.+|++++++.++++ +++|+++++
T Consensus 83 ~~~~----~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~- 154 (359)
T 1svv_A 83 CSLA----LRPWEAVIATQLGHISTHET--GAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT- 154 (359)
T ss_dssp HHHH----CCTTEEEEEETTSHHHHSST--THHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-
T ss_pred HHHH----hCCCCEEEEcccchHHHHHH--HHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-
Confidence 9998 67899999999999976542 1346679999999986 7788999999999765 899999998
Q ss_pred CcCccccc---HHHHHHHHHhcCcEEEEeccc---cCCcccCCCCC----CCCcEEEecccCCCCCCceeEEEEeccccc
Q 012718 219 NMLASILP---IEEIVHWSHDVGAKVLVDACQ---SVPHMVVDVQG----LDADFLVASSHKMCGPTGIGFLFGKSDLLS 288 (458)
Q Consensus 219 n~tG~~~~---l~~i~~l~~~~~~~vivD~a~---~~g~~~~~~~~----~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~ 288 (458)
||||.++| +++|.++|+++|+++|+|++| +.+..+.+... ...|+++.|++|++++.|+|++++++++++
T Consensus 155 ~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~ 234 (359)
T 1svv_A 155 TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKP 234 (359)
T ss_dssp CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCT
T ss_pred CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHH
Confidence 79999999 889999999999999999999 55555443332 247999999999988888999999988877
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
.+.+....++. .+ +.......++. +.+.+.+++++.++++++++++.+.| +.+++++
T Consensus 235 ~~~~~~~~~~~----------------~~---~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~ 291 (359)
T 1svv_A 235 NARHLIKQRGA----------------LM---AKGWLLGIQFE---VLMKDNLFFELGAHSNKMAAILKAGL-EACGIRL 291 (359)
T ss_dssp THHHHHHHTTC----------------CC---TTTHHHHHHHH---HHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCB
T ss_pred HHHHHHhcCCc----------------cc---ccchhhHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEE
Confidence 66543210100 00 11111222222 23333346788899999999999999 5568877
Q ss_pred eCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 369 YGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
..+.. ++++++.++ .++.+.|.+++||.+.+ .. -+.++++|++++..++++|+++++++|+
T Consensus 292 ~~~~~------~~~~~~~~~----~~~~~~l~~~~gi~v~~-~~--------~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 352 (359)
T 1svv_A 292 AWPSA------SNQLFPILE----NTMIAELNNDFDMYTVE-PL--------KDGTCIMRLCTSWATEEKECHRFVEVLK 352 (359)
T ss_dssp SSCCS------SSEECBEEE----HHHHHHHTTTEECEEEE-EE--------TTTEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCc------cceEEEEcC----HHHHHHHHHhcCEEEEe-cc--------cCCCceEEEEccCcCCHHHHHHHHHHHH
Confidence 65431 557777664 57888888776888721 10 0125689999998899999999999999
Q ss_pred HHHHhh
Q 012718 449 ETVSFF 454 (458)
Q Consensus 449 ~~~~~~ 454 (458)
++++++
T Consensus 353 ~~~~~~ 358 (359)
T 1svv_A 353 RLVAST 358 (359)
T ss_dssp HC----
T ss_pred HHHhcc
Confidence 987654
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=264.47 Aligned_cols=340 Identities=15% Similarity=0.119 Sum_probs=248.6
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC--CCC-cEEEeCChhH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSG-EIVFTKNATE 140 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~-~v~~t~g~t~ 140 (458)
+++++.|+.+... +.|+.+.+++.+.+.....++... ...+..+.+.+.+.+.+|.+ ..+ +|++|+|+++
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~------g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~ 102 (396)
T 3jtx_A 29 GMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTA------GLPELRQACANWLKRRYDGLTVDADNEILPVLGSRE 102 (396)
T ss_dssp TCCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCTT------CCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHH
T ss_pred CCCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCCC------CcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHH
Confidence 4788999988766 578889999888765433322111 12333334444444445753 234 8999999999
Q ss_pred HHHHHHHHcCCCCCCCC-----CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEE
Q 012718 141 AINLVAYSWGLSNLKSG-----DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVI 214 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g-----~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~ 214 (458)
++.+++.++ +++| |+|+++.++|++ +...++..|++++.++++++ +.+|++.+++.+++++++|++
T Consensus 103 al~~~~~~~----~~~g~~~~~d~vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l 174 (396)
T 3jtx_A 103 ALFSFVQTV----LNPVSDGIKPAIVSPNPFYQI----YEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFV 174 (396)
T ss_dssp HHHHHHHHH----CCC---CCCCEEEEEESCCHH----HHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEE
T ss_pred HHHHHHHHH----hCCCCccCCCEEEEcCCCcHh----HHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEE
Confidence 999999988 5675 799999999994 45566778999999998654 467999999999889999999
Q ss_pred ecccCcCcccccHH---HHHHHHHhcCcEEEEeccccCCcc----cCCC--------CCCCCcEEEecccCCCCCCc--e
Q 012718 215 HHISNMLASILPIE---EIVHWSHDVGAKVLVDACQSVPHM----VVDV--------QGLDADFLVASSHKMCGPTG--I 277 (458)
Q Consensus 215 ~~~~n~tG~~~~l~---~i~~l~~~~~~~vivD~a~~~g~~----~~~~--------~~~~~d~~~~s~~K~~gp~g--~ 277 (458)
++++||||.++|.+ +|+++|+++|+++|+|++|+.... +... ...+.++++.|+||.+|.+| +
T Consensus 175 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 254 (396)
T 3jtx_A 175 CSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRS 254 (396)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCC
T ss_pred ECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccce
Confidence 99999999999955 599999999999999999985322 2221 12568899999999877666 8
Q ss_pred eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLY 357 (458)
Q Consensus 278 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~ 357 (458)
|+++.++++++.+..... ...++++.....++..+++. ...+++.+++++++++++.
T Consensus 255 G~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~ 311 (396)
T 3jtx_A 255 GFVAGDAELLKNFLLYRT---------------------YHGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVI 311 (396)
T ss_dssp EEEEECHHHHHHHHHHHH---------------------HHTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHh---------------------hcccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHH
Confidence 999998887766653221 11245666666776666653 2236788889999999999
Q ss_pred HHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCH
Q 012718 358 ENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437 (458)
Q Consensus 358 ~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~ 437 (458)
+.|++. +.+..+. .+.++++.+++.+..++.+.|.+++||.+.+|..|.......-...+++||+++. +.
T Consensus 312 ~~l~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~ 381 (396)
T 3jtx_A 312 PILQQV--FDVKLPD------ASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DV 381 (396)
T ss_dssp HHHTTT--SCCCCCS------SSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CH
T ss_pred HHHHhc--CCccCCC------eeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CH
Confidence 999875 2222222 2568899998767788998885444999999987654211001126899999984 99
Q ss_pred HHHHHHHHHHHHHH
Q 012718 438 EDVDEFIHALNETV 451 (458)
Q Consensus 438 ~di~~l~~~l~~~~ 451 (458)
+++++++++|.+++
T Consensus 382 ~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 382 ATCVKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=284.33 Aligned_cols=348 Identities=11% Similarity=0.062 Sum_probs=252.5
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCC--------C-cchhhhHHHHHHHHHHHH
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHR--------G-IHFLSAKATDEYELARKK 119 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~ 119 (458)
..++++|+.+ +..+|||++++++.|+.+.+++.........++.. . ....+....+..+++++.
T Consensus 69 ~~~~~~~~~~-------~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (456)
T 2z67_A 69 KLFLKFLSMM-------DTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILES 141 (456)
T ss_dssp HHHHHHHHTT-------BGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------cccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHH
Confidence 4456778876 45689999999999999999887743211111100 0 011122356778889999
Q ss_pred HHHHcCCCCCCcEEEeCChh-HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC---CCCCC
Q 012718 120 VAAFINASDSGEIVFTKNAT-EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL---NDDES 195 (458)
Q Consensus 120 la~~~g~~~~~~v~~t~g~t-~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~---~~~~~ 195 (458)
+++++|+++. ++||+|+| .++..++.++. ...+++.|++++++|++. ...++..|++++.++. ++++.
T Consensus 142 la~~~g~~~~--~~~t~g~te~a~~~al~~~~--~~~~~~~vi~~~~~h~s~----~~~~~~~G~~~~~v~~~~~~~~~~ 213 (456)
T 2z67_A 142 FFKQLGLNVH--AIATPISTGMSISLCLSAAR--KKYGSNVVIYPYASHKSP----IKAVSFVGMNMRLVETVLDGDRVY 213 (456)
T ss_dssp HHHHTTCCCE--EEEESSCHHHHHHHHHHHHH--HHHCCCEEEEECCCCHHH----HHHHHHTTCEEEEECCEEETTEEE
T ss_pred HHHHcCCCCC--EEEeCcHHHHHHHHHHHHHH--HhcCCCEEEEECCCcHHH----HHHHHHcCCCceEEEEeccCCCCC
Confidence 9999999853 99999999 45554555542 112677899999999963 4556678999999987 56688
Q ss_pred CCHHHHHHhh-c----CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCc---ccCCCCCC--CCcEEE
Q 012718 196 PDLDKLKEML-S----RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPH---MVVDVQGL--DADFLV 265 (458)
Q Consensus 196 ~d~~~l~~~l-~----~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~---~~~~~~~~--~~d~~~ 265 (458)
+|+++|++++ + .++.+|++..++|+||.+.|+++|.++|+++|+++|+|++|+... .+.+...+ ++|+++
T Consensus 214 ~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~ 293 (456)
T 2z67_A 214 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVV 293 (456)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEE
T ss_pred cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEE
Confidence 9999999999 5 367788899999999999999999999999999999998887433 33332222 799999
Q ss_pred ecccC-CCCCCceeEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 266 ASSHK-MCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 266 ~s~~K-~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
+|+|| +++|.|+|+++++ +++++.+.+.+.|+. +....+++.+++..+...+++
T Consensus 294 ~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~------------------------~~~~~~~~~aal~~l~~~~~~ 349 (456)
T 2z67_A 294 SSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRA------------------------SATPVVNTLVSLLSMGSKNYL 349 (456)
T ss_dssp EEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCB------------------------CSHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCC------------------------CCCHHHHHHHHHHHHHHHHHH
Confidence 99999 4679999999995 456555543332211 112356677777777777889
Q ss_pred HHHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEe--CCCChHHHHHHHhhhcCe---Eec------c
Q 012718 344 KIHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNV--ENIHPTDIATLLDQQYGV---ATR------S 409 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~~gi---~~~------~ 409 (458)
++.++..++++++.+.|++++ +..+..+. ++++|++ ++. ..++.+.|.++ || .+. .
T Consensus 350 ~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--------~~v~~~~~~~~~-~~~l~~~L~~~-gi~~~rv~~~~g~f~ 419 (456)
T 2z67_A 350 ELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--------SPIASCISVNSD-PVEIAAKLYNL-RVTGPRGIKKTDHFG 419 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--------CSSEEEEECSSC-HHHHHHHHHHT-TEESCEEECTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCEecCCC--------CeEEEEEecccH-HHHHHHHHHHc-CCCcceEEeecCccc
Confidence 999999999999999998875 65554321 5667777 432 46888999888 76 222 1
Q ss_pred CCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 410 GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 410 g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
|.+|.. ...+++|+|++.++|++||++++++|++++
T Consensus 420 G~~~~~------~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 420 NCYLGT------YTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HTCSSC------CSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred cccccc------cCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 333321 114799999999999999999999998754
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-32 Score=270.84 Aligned_cols=356 Identities=15% Similarity=0.113 Sum_probs=249.5
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
..||++...++.|..+...+ +.. ..|++...+..+....+..+++++.+++++|.+.. +++||+|+|+|+.+++.
T Consensus 109 p~~~~~~~~~~~~~~~~~~~---l~~-~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~-~~~~t~ggtea~~~al~ 183 (515)
T 2jis_A 109 PRFFNQLFSGLDPHALAGRI---ITE-SLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSG-DGIFCPGGSISNMYAVN 183 (515)
T ss_dssp TTEESSSCCCCCHHHHHHHH---HHH-HHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSC-EEEEESSHHHHHHHHHH
T ss_pred CCeEEEeeCCCCHHHHHHHH---HHH-HhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCC-CeEEcCCcHHHHHHHHH
Confidence 36999998888887776633 222 12333333444556677888899999999999854 89999999999998887
Q ss_pred HcCCC---CCC-CCC------EEEEcCCCCccchHHHHHHHHHcCC---eEEEEeCCCCCCCCHHHHHHhhcC------C
Q 012718 148 SWGLS---NLK-SGD------EVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSR------K 208 (458)
Q Consensus 148 ~l~~~---~~~-~g~------~vl~~~~~~~s~~~~~~~~a~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~------~ 208 (458)
+++.. .++ +|+ +|+++..+|++.. ..++..|. +++.+|.++++.+|+++|++++++ +
T Consensus 184 ~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~----~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~ 259 (515)
T 2jis_A 184 LARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQ----KGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAV 259 (515)
T ss_dssp HHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH----HHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhhHHhhcCccccCCeEEEECCCccHHHH----HHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCC
Confidence 76210 012 454 8999999999664 44455576 899999988899999999999975 4
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC-----CCCC-CCcEEEecccCCCC-CCceeEEE
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-----VQGL-DADFLVASSHKMCG-PTGIGFLF 281 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~~g-p~g~G~l~ 281 (458)
+++|++++++|+||.+.|+++|+++|+++|+++|+|++|+.+..+.+ +... ++|++++|+||+++ |.|+|+++
T Consensus 260 ~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~ 339 (515)
T 2jis_A 260 PFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALL 339 (515)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEE
Confidence 89999999999999999999999999999999999999998877544 3443 68999999999654 88899999
Q ss_pred Eecc--cccc----CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 282 GKSD--LLSA----MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 282 ~~~~--~~~~----l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
++++ +++. ..++..++........+...+ ..+.+... ....++++++.+...|++++.++..+++++
T Consensus 340 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~-----~~~~~rr~--~al~~~~~l~~lg~~g~~~~~~~~~~~a~~ 412 (515)
T 2jis_A 340 LQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDK-----VVQCGRRV--DCLKLWLMWKAQGDQGLERRIDQAFVLARY 412 (515)
T ss_dssp ESCCSCHHHHHHCC---------CCSCGGGCCGGG-----CSCSSCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeChHHHHHHHhcCCchhccCCcccccccCCCCCC-----CCCCCCcc--cHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9987 4443 233332221100000000000 01111110 124555566777777889999999999999
Q ss_pred HHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC------ChH-----------HHHHHHhhhcCeEeccCCCCChhhH
Q 012718 356 LYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI------HPT-----------DIATLLDQQYGVATRSGHHCAQPLH 418 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~-----------~~~~~l~~~~gi~~~~g~~~~~~~~ 418 (458)
+.+.|++++++++..++. .++++|+.... +.. .+.+.+.+. |+.+.... .
T Consensus 413 l~~~L~~~~g~~~~~~~~------~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~----~-- 479 (515)
T 2jis_A 413 LVEEMKKREGFELVMEPE------FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQ----P-- 479 (515)
T ss_dssp HHHHHHTSTTEEESSCCS------SSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEE----E--
T ss_pred HHHHHhcCCCEEEeCCCC------eeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEE----E--
Confidence 999999999999987642 45677865210 111 255666666 75432100 0
Q ss_pred hhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHh
Q 012718 419 RYLGVNASARASL-HFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 419 ~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.-+..+++|+++ ++++|++||+++++.|++++++
T Consensus 480 -~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 480 -HGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp -ETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred -ECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 001246899999 7999999999999999988764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=274.31 Aligned_cols=342 Identities=12% Similarity=0.127 Sum_probs=250.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g~ 138 (458)
++.+.|..+... ++|+.+.+++.+.+.... ... .+ .......++++.++++++ +++.++|++|+|+
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~~--~y----~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~ 100 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF-MLN--QY----TKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGG 100 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCG-GGG--SC----CCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHH
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCCC-ccC--CC----CCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECCh
Confidence 567899988766 578899999998886521 000 00 001112345555555554 3331389999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC----C--------CCCCHHHHHHhhc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----D--------ESPDLDKLKEMLS 206 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~----~--------~~~d~~~l~~~l~ 206 (458)
++++..++.++ +++||+|+++.++|++. ...++..|++++.+++++ + +.+|++++++.++
T Consensus 101 ~~a~~~~~~~~----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~ 172 (422)
T 3fvs_A 101 YGALFTAFQAL----VDEGDEVIIIEPFFDCY----EPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT 172 (422)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC
T ss_pred HHHHHHHHHHH----cCCCCEEEEcCCCchhh----HHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcC
Confidence 99999999988 68999999999999954 555667899999999876 3 3579999999999
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCC----CCCCcEEEecccCCCCCC
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQ----GLDADFLVASSHKMCGPT 275 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~----~~~~d~~~~s~~K~~gp~ 275 (458)
+++++|++++++||||.++| +++|+++|+++|+++|+|++|+... .+.++. ..+.++++.|+||.+|++
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 252 (422)
T 3fvs_A 173 SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT 252 (422)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCG
T ss_pred CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCc
Confidence 99999999999999999995 8899999999999999999998522 222221 224668999999988866
Q ss_pred c--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH------HHhCHHHHHH
Q 012718 276 G--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL------STIGMQKIHA 347 (458)
Q Consensus 276 g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~------~~~g~~~~~~ 347 (458)
| +|++++++++++.+..... ....+.+.....++..+++.. ....++++.+
T Consensus 253 G~r~G~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 311 (422)
T 3fvs_A 253 GWKVGWVLGPDHIMKHLRTVHQ---------------------NSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQ 311 (422)
T ss_dssp GGCCEEEECCHHHHHHHHHHHH---------------------TTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHH
T ss_pred cceEEEEEeCHHHHHHHHHHHh---------------------hccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 6 8999999887766543221 112345666666666666541 1123678889
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC----CC----------hHHHHHHHhhhcCeEeccCCCC
Q 012718 348 YEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN----IH----------PTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~----------~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
+++++++++.+.|+++ ++++..+.. +.++++.++. .. ..++.+.+.+++||.+.+|..|
T Consensus 312 ~~~~~~~~l~~~L~~~-g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f 384 (422)
T 3fvs_A 312 AMQRCRDHMIRSLQSV-GLKPIIPQG------SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIF 384 (422)
T ss_dssp HHHHHHHHHHHHHHTT-TCEEEBCSB------SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHc-CCeecCCCe------eeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHh
Confidence 9999999999999998 888765541 5577887642 11 4477777554449999999876
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
....... ...+++|++++. +++++++++++|++++++
T Consensus 385 ~~~~~~~-~~~~~iRis~~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 385 YSVPHQK-HFDHYIRFCFVK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp SCHHHHT-TSCSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred cCCcCCC-CCCCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 5432111 126899999985 999999999999998865
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=270.13 Aligned_cols=357 Identities=15% Similarity=0.135 Sum_probs=248.3
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHH-hccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC-CCcEEEeCChhHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-SGEIVFTKNATEAINLVA 146 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~~v~~t~g~t~a~~~~~ 146 (458)
.||++...+..|..+... ++.. .+.+. ..+..+.......+++++.+++++|.+. ..+++||+|+|+|+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~---~l~~~~n~~~--~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al 168 (504)
T 2okj_A 94 RFFNQLSTGLDIIGLAGE---WLTSTANTNM--FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSI 168 (504)
T ss_dssp TEESSSSCCCCHHHHHHH---HHHHHHCCBS--SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHH
T ss_pred CEEEEccCCCCHHHHHHH---HHHHhhccCC--CchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHH
Confidence 588888777777665442 2222 23332 2233334456666778899999999983 238999999999999999
Q ss_pred HHcCCCCC----CCC-----C-EEEEcCCCCccchHHHHHHHHHcCC---eEEEEeCCCCCCCCHHHHHHhhcC------
Q 012718 147 YSWGLSNL----KSG-----D-EVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSR------ 207 (458)
Q Consensus 147 ~~l~~~~~----~~g-----~-~vl~~~~~~~s~~~~~~~~a~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~------ 207 (458)
.+++.... ++| + .|+++.++|++.. ..++..|. +++.+|.++++.+|+++|++++++
T Consensus 169 ~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~----~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~ 244 (504)
T 2okj_A 169 MAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK----KAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGY 244 (504)
T ss_dssp HHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH----HHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH----HHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88731000 134 5 7999999999654 44444565 899999988899999999999976
Q ss_pred CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCccc-----CCCCCC-CCcEEEecccCCCC-CCceeEE
Q 012718 208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV-----VDVQGL-DADFLVASSHKMCG-PTGIGFL 280 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~-----~~~~~~-~~d~~~~s~~K~~g-p~g~G~l 280 (458)
++++|++++++|+||.+.|+++|+++|+++|+++|+|++|+.+... ..+... ++|++++|+||+++ |.|+|++
T Consensus 245 ~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l 324 (504)
T 2okj_A 245 VPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI 324 (504)
T ss_dssp EEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEE
Confidence 5899999999999999999999999999999999999999977653 223322 68999999999766 8889999
Q ss_pred EEecc-ccc----cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 281 FGKSD-LLS----AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 281 ~~~~~-~~~----~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
+++++ +++ ...++..++........+...+ .++.+... ....+.++++.+...|++++.++..+++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~rr~--~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~ 397 (504)
T 2okj_A 325 LVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDK-----AIQCGRHV--DIFKFWLMWKAKGTVGFENQINKCLELAEY 397 (504)
T ss_dssp EESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGG-----SSCSSCBC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHhcCCCccccCCcccccCcCCcccC-----CCCCCCCc--cHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99874 443 2334443222100000000111 01111110 123445556666666788999999999999
Q ss_pred HHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC-----------------hHHHHHHHhhhcCeE-eccCCCCChhh
Q 012718 356 LYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH-----------------PTDIATLLDQQYGVA-TRSGHHCAQPL 417 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~~~~~l~~~~gi~-~~~g~~~~~~~ 417 (458)
+.+.|++++++++..+.+ ...++++|...... ..++.+.|.++ |+. +.++..
T Consensus 398 l~~~L~~~~~~~~~~~~~----p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~----- 467 (504)
T 2okj_A 398 LYAKIKNREEFEMVFNGE----PEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQ----- 467 (504)
T ss_dssp HHHHHTTCTTEEESSSSC----CSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEE-----
T ss_pred HHHHHhcCCCEEEEecCC----CCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEE-----
Confidence 999999999999986311 12667788763210 24678888888 854 332210
Q ss_pred HhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhh
Q 012718 418 HRYLGVNASARASLH-FYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 418 ~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+..+++|++++ ++++++||+++++.|+++++++
T Consensus 468 ---~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 468 ---GDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp ---TTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred ---CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 011358999996 8899999999999999988754
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=262.48 Aligned_cols=284 Identities=15% Similarity=0.186 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCC-CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 113 YELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG-DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
..++|+++|+++|++++ +|++|+|+++++..++.++ +++| |+|+++.|+|++. ...++..|++++.++.+
T Consensus 60 ~~~lr~~la~~~~~~~~-~v~~~~G~~~ai~~~~~~~----~~~g~d~Vl~~~p~~~~~----~~~~~~~g~~~~~v~~~ 130 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPE-QVLVSRGADEGIELLIRAF----CEPGKDAILYCPPTYGMY----SVSAETIGVECRTVPTL 130 (356)
T ss_dssp CHHHHHHHHHHHTSCGG-GEEEESHHHHHHHHHHHHH----CCTTTCEEEECSSSCTHH----HHHHHHHTCEEEECCCC
T ss_pred HHHHHHHHHHHhCCChH-HEEEcCCHHHHHHHHHHHH----hCCCCCEEEEeCCChHHH----HHHHHHcCCEEEEeeCC
Confidence 45899999999998865 9999999999999999988 6789 9999999999954 55566679999999988
Q ss_pred CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH---HHHHHHHhcCcEEEEeccccCCcc--c-CCC-CCCCCcEE
Q 012718 192 DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE---EIVHWSHDVGAKVLVDACQSVPHM--V-VDV-QGLDADFL 264 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~---~i~~l~~~~~~~vivD~a~~~g~~--~-~~~-~~~~~d~~ 264 (458)
+++.+|++++++.++ ++++|++++++||||.++|.+ +|+++|+ +|+++|+|++|+.... + .++ ...+.+++
T Consensus 131 ~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~ 208 (356)
T 1fg7_A 131 DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAI 208 (356)
T ss_dssp TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEE
T ss_pred CCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEE
Confidence 777889999999998 899999999999999999955 4555566 9999999999984331 1 222 34567899
Q ss_pred EecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 265 VASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 265 ~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
+.|+||.+|++| +|++++++++++.+..... .+ +.+.....++.++++......+
T Consensus 209 ~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--------------------~~---~~~~~~~~a~~~~l~~~~~~~~ 265 (356)
T 1fg7_A 209 LRTLSKAFALAGLRCGFTLANEEVINLLMKVIA--------------------PY---PLSTPVADIAAQALSPQGIVAM 265 (356)
T ss_dssp EEESSSTTCCGGGCCEEEEECHHHHHHHHHHSC--------------------SS---CSCHHHHHHHHHHTSHHHHHHH
T ss_pred EecchHhhcCchhhhEEEEeCHHHHHHHHHhcC--------------------CC---CCCHHHHHHHHHHhcCccHHHH
Confidence 999999999777 8999998887765543211 01 3455555555555543211116
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEecc-CCCCChhhHhhc
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRS-GHHCAQPLHRYL 421 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~-g~~~~~~~~~~~ 421 (458)
++..++++++++++.+.|++++++....+. .+++++++++ +..++.+.|.++ ||.+++ |..|
T Consensus 266 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------~~~~~~~~~~--~~~~l~~~L~~~-gI~v~~~g~~~-------- 328 (356)
T 1fg7_A 266 RERVAQIIAEREYLIAALKEIPCVEQVFDS------ETNYILARFK--ASSAVFKSLWDQ-GIILRDQNKQP-------- 328 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTEEEECCC------SSSEEEEEET--THHHHHHHHHHT-TEECEECTTST--------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEECCC------CCeEEEEECC--CHHHHHHHHHHC-CEEEEECCCCC--------
Confidence 778888999999999999988654333332 1678899987 677899999877 999998 7644
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
+.++++||+++ +.+|+++++++|+++
T Consensus 329 ~~~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 329 SLSGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp TCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 23569999998 689999999998753
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=269.11 Aligned_cols=317 Identities=19% Similarity=0.205 Sum_probs=239.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeE
Q 012718 106 SAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185 (458)
Q Consensus 106 ~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~ 185 (458)
+.+..+..+++++.+++++|.++. ++++++|+|.+++.+..++ .+++||+|+++.++|++...++..+++..|+++
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~-~i~~~~g~taa~ea~~~a~---~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v 178 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIA-NASMYDGATALAEGVLLAL---RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEE-CSCBSSHHHHHHHHHHHHH---HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcc-ceEEeCcHHHHHHHHHHHH---hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence 445678889999999999999864 7899999995555554443 246899999999999999888888888899999
Q ss_pred EEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEecc-ccCCcccCCCCCCCCcEE
Q 012718 186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC-QSVPHMVVDVQGLDADFL 264 (458)
Q Consensus 186 ~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a-~~~g~~~~~~~~~~~d~~ 264 (458)
+.++. +++.+|+++ +++++++|+++++ |+||.+.|+++|+++||++|+++|+|.. ++.|..... ..+++|++
T Consensus 179 ~~v~~-~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-~~~g~D~~ 251 (438)
T 1wyu_A 179 LTLPL-EGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-GAYGADIA 251 (438)
T ss_dssp EEECC-BTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-HHHTCSEE
T ss_pred EEEcC-cCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-ccCCCCEE
Confidence 99997 567777766 6778999999999 9999999999999999999999997755 555654332 44679999
Q ss_pred EecccC-----C-CCCCceeEEEEeccccccCCCccccCcce----EeeecCCCCCCCCCCccCCCCCCH---HHHHHHH
Q 012718 265 VASSHK-----M-CGPTGIGFLFGKSDLLSAMPPFLGGGEMI----SDVFLDHSTFADPPSRFEAGTPAI---GEAIGLG 331 (458)
Q Consensus 265 ~~s~~K-----~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~gt~~~---~~~~~l~ 331 (458)
++|.+| + +|| |+|++++++++++.+.....|+... ......... .....+++.+|+++ ..+.++.
T Consensus 252 ~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~-~~~~~r~~~~t~~~~~~~~~~a~~ 329 (438)
T 1wyu_A 252 VGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQA-REQYIRRAKAKSNITTNAQLTALM 329 (438)
T ss_dssp EEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGG-GSHHHHGGGSSCCCCSCCHHHHHH
T ss_pred EECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccc-cccccchhcccCCccchHHHHHHH
Confidence 999666 2 345 8999999999888876554443210 000000000 00112445566665 4455555
Q ss_pred HH--HHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEe--
Q 012718 332 AA--IDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVAT-- 407 (458)
Q Consensus 332 ~a--l~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~-- 407 (458)
++ +..+...|++++.++..++++++.+.|++++|+++..+.+ ...++.++++ .+..++.+.|.++ ||.+
T Consensus 330 aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~L~~~-gi~v~~ 402 (438)
T 1wyu_A 330 GAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-----FFNEFALALP-KDPEAVRRALAER-GFHGAT 402 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-----BCSEEEEECS-SCHHHHHHHHHHT-TCCCCE
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCC-----eEEEEEEeCC-CCHHHHHHHHHHC-Cceecc
Confidence 55 6777666789999999999999999999998999876531 1335566654 4678999999988 9998
Q ss_pred ccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 408 RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 408 ~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+++.+|. ++++|+|++.++|.+|+++++++|++++
T Consensus 403 ~~~~~~~---------~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 403 PVPREYG---------ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp ECCTTSC---------SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ccccccC---------CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 5665442 5789999999999999999999998764
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=268.68 Aligned_cols=342 Identities=15% Similarity=0.154 Sum_probs=251.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCC-cEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSG-EIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~-~v~~t~g~ 138 (458)
+++++|+.+..+ +.++.+.+++.+.+....... .. +.......++++.+++++ |.+ ..+ +|++|+|+
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~----~~--y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~ 110 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAANSPDPLA----NQ--YTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGA 110 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGG----GS--CCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhccccCc----cC--CCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecCh
Confidence 457999988765 577889999988875421000 00 000111235556666654 754 235 89999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC----------CCCCHHHHHHhhcCC
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD----------ESPDLDKLKEMLSRK 208 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~----------~~~d~~~l~~~l~~~ 208 (458)
++|+..++.++ +++||+|+++.++|++. ...++..|++++.++.+++ +.+|++.+++.++++
T Consensus 111 ~~a~~~~~~~~----~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 182 (429)
T 1yiz_A 111 YEALYATIQGH----VDEGDEVIIIEPFFDCY----EPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK 182 (429)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT
T ss_pred HHHHHHHHHHh----cCCCCEEEEcCCCchhH----HHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccC
Confidence 99999999998 67899999999999965 4445667999999998753 468999999999889
Q ss_pred ceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc------ccC-CCC-CCCCcEEEecccCCCCCCc-
Q 012718 209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH------MVV-DVQ-GLDADFLVASSHKMCGPTG- 276 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~------~~~-~~~-~~~~d~~~~s~~K~~gp~g- 276 (458)
+++|++++++||||.++| +++|+++|+++|+++|+|++|+... .++ .+. ..+.|+++.|+||.+|++|
T Consensus 183 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 262 (429)
T 1yiz_A 183 TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW 262 (429)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred ceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCc
Confidence 999999999999999997 8899999999999999999998422 122 232 3468999999999988888
Q ss_pred -eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH-----HH-HhCHHHHHHHH
Q 012718 277 -IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY-----LS-TIGMQKIHAYE 349 (458)
Q Consensus 277 -~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~-----~~-~~g~~~~~~~~ 349 (458)
+|++++++++++.+..... ....+.+.....++.++++. .. ...++++++++
T Consensus 263 r~G~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (429)
T 1yiz_A 263 KIGWAYGPEALLKNLQMVHQ---------------------NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGEL 321 (429)
T ss_dssp CCEEEESCHHHHHHHHHHHH---------------------TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHH
T ss_pred ceEEEEeCHHHHHHHHHHHh---------------------hcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 9999999887765543211 11234566666666666665 21 12267888999
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------------ChHHHHHHHh-hhcCeEeccCCCCCh
Q 012718 350 MELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------------HPTDIATLLD-QQYGVATRSGHHCAQ 415 (458)
Q Consensus 350 ~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~~~~l~-~~~gi~~~~g~~~~~ 415 (458)
+++++++.+.|+++ ++++..+. .+.++++.+++. +..++.+.|. ++ ||.+.+|..|..
T Consensus 322 ~~~~~~l~~~L~~~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-gv~v~~g~~f~~ 393 (429)
T 1yiz_A 322 MAKRDYMASFLAEV-GMNPTVPQ------GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSV-GLQGIPPSAFYS 393 (429)
T ss_dssp HHHHHHHHHHHHHH-TCEEEECS------BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHT-SEECBCGGGGSC
T ss_pred HHHHHHHHHHHHhC-CCcccCCC------cceEEEEEcccccccccccccccCCCHHHHHHHHHHhC-CEEEeCchHhCC
Confidence 99999999999887 77776443 155889998752 3567888776 55 999998864432
Q ss_pred hhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 416 PLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 416 ~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
...... .++++||+++ +++++|++++++|.+++++
T Consensus 394 ~~~~~~-~~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 394 EPNKHL-GEDFVRYCFF--KKDENLQKAAEILRKWKGS 428 (429)
T ss_dssp GGGGGG-TTTEEEEECC--SCHHHHHHHHHHHHHHSCC
T ss_pred CcccCC-CCCeEEEEec--CCHHHHHHHHHHHHHhccC
Confidence 110000 2579999998 5899999999999988753
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=268.01 Aligned_cols=337 Identities=15% Similarity=0.114 Sum_probs=249.7
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
++++++|+.+..+ +.++.+.+++ +.+... .. .+. ......++++.++++++ .++ ++|++|+|
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~---~~--~y~----~~~g~~~l~~~la~~~~~~~g~~~~~-~~v~~~~g 110 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENKPE---VV--YYS----HSAGIWELREAFASYYKRRQRVDVKP-ENVLVTNG 110 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTCCS---SC--CCC----CTTCCHHHHHHHHHHHHHTSCCCCCG-GGEEEESH
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHhcC---CC--CCC----CCCCcHHHHHHHHHHHHHHhCCCCCH-HHEEEeCC
Confidence 4678999998876 5677888888 765421 10 010 11223466777777764 333 48999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+|+|+..++.++ +++||+|+++.++|++. ...++..|++++.++.++ ++.+ +++|++.+++++++|+++
T Consensus 111 ~t~a~~~~~~~~----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~ 181 (409)
T 2gb3_A 111 GSEAILFSFAVI----ANPGDEILVLEPFYANY----NAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLS 181 (409)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEEESCCTHH----HHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEE
T ss_pred HHHHHHHHHHHh----CCCCCEEEEcCCCchhH----HHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEEC
Confidence 999999999988 68899999999999954 445566799999999875 2334 788999998899999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCC-CCC-CCCcEEEecccCCCCCCc--eeEEEEec-
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVD-VQG-LDADFLVASSHKMCGPTG--IGFLFGKS- 284 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~-~~~-~~~d~~~~s~~K~~gp~g--~G~l~~~~- 284 (458)
+++||||.++| +++|.++|+++|+++|+|++|+.+.. +.. +.. .+.|++++|+||.+|++| +|++++++
T Consensus 182 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 261 (409)
T 2gb3_A 182 NPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE 261 (409)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcH
Confidence 99999999986 78999999999999999999986542 122 222 257999999999998777 89999998
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
++++.+...... + . +++.....++.++++.. ...++++.++++++++++.+.|+++
T Consensus 262 ~l~~~l~~~~~~--------------------~-~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~- 317 (409)
T 2gb3_A 262 ELISHAMKLAQG--------------------R-L-APPLLEQIGSVGLLNLD-DSFFDFVRETYRERVETVLKKLEEH- 317 (409)
T ss_dssp HHHHHHHHHHHH--------------------S-C-CCCHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhc--------------------c-C-CCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 777665433211 1 1 45555555665666432 2236778888999999999999887
Q ss_pred CEEE-eCCCCCCcCccccEEEEEeCCCChHHHHHHHhhh-----cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 365 NIRI-YGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQ-----YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 365 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-----~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
++++ ..+. .+.++++.+++.+..++.+.|.++ +||.+.+|..|.... -..++++|++++ ++++
T Consensus 318 g~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~---~~~~~~iRis~~--~~~e 386 (409)
T 2gb3_A 318 GLKRFTKPS------GAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTP---GLGKKEIRIACV--LEKD 386 (409)
T ss_dssp TCCCBCCCS------BSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSST---TTTSSEEEEECC--SCHH
T ss_pred CceeeeCCC------eeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCC---CCCCCEEEEEeC--CCHH
Confidence 7766 4332 145777788766778899988865 599999886443210 012579999999 7999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 012718 439 DVDEFIHALNETVSFFNV 456 (458)
Q Consensus 439 di~~l~~~l~~~~~~~~~ 456 (458)
|+++++++|+++++++++
T Consensus 387 ~i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 387 LLSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999987653
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=268.68 Aligned_cols=341 Identities=13% Similarity=0.126 Sum_probs=250.3
Q ss_pred CCeEEecCCCCC---CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C---CCCCCcEEEe
Q 012718 66 KKLVYLDNAATS---QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N---ASDSGEIVFT 135 (458)
Q Consensus 66 ~~~i~l~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g---~~~~~~v~~t 135 (458)
++++.|..+... .+++.+.+++.+.+......... +.......++++.+++++ | ++++ +|++|
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~------y~~~~g~~~lr~~la~~l~~~~g~~~~~~~-~v~~t 115 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQ------YSTTEGDPVLKQQILKLLERMYGITGLDED-NLIFT 115 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTS------CCCTTCCHHHHHHHHHHHHHHHCCCSCCGG-GEEEE
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcC------CCCCCCCHHHHHHHHHHHHhccCCCCCCcc-cEEEe
Confidence 567888766433 36788899998887652100000 011122346777888877 8 4443 99999
Q ss_pred CChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC--------
Q 012718 136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-------- 207 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-------- 207 (458)
+|+++++.+++.++ +++||+|+++.++|++ +...++..|++++.++.++++ +|++.+++.+++
T Consensus 116 ~G~~~al~~~~~~l----~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~ 186 (425)
T 1vp4_A 116 VGSQQALDLIGKLF----LDDESYCVLDDPAYLG----AINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIK 186 (425)
T ss_dssp EHHHHHHHHHHHHH----CCTTCEEEEEESCCHH----HHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGG
T ss_pred ccHHHHHHHHHHHh----CCCCCEEEEeCCCcHH----HHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCC
Confidence 99999999999988 6789999999999995 455566789999999987665 799999998876
Q ss_pred CceEE-EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCC---CCCCCcEEEecccCCCCCCc
Q 012718 208 KTKLV-VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDV---QGLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 208 ~~~~v-~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~---~~~~~d~~~~s~~K~~gp~g 276 (458)
++++| ++++++||||.++| +++|+++|+++|+++|+|++|+.... +..+ ...+.+++++|+||++| +|
T Consensus 187 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G 265 (425)
T 1vp4_A 187 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PG 265 (425)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GG
T ss_pred CceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cc
Confidence 68887 58999999999998 56899999999999999999986332 1222 22356799999999988 67
Q ss_pred --eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHH
Q 012718 277 --IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-STIGMQKIHAYEMELA 353 (458)
Q Consensus 277 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~g~~~~~~~~~~l~ 353 (458)
+|++++++++++.+......+ ..+.+.....++..+++.. ....++++++++++++
T Consensus 266 ~r~G~~~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (425)
T 1vp4_A 266 LRIGMVAGSKEFIRKIVQAKQSA---------------------DLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKR 324 (425)
T ss_dssp GCEEEEECCHHHHHHHHHHHHHH---------------------HSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHH
T ss_pred cceEEEeeCHHHHHHHHHHhhhh---------------------cCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 799999988776655322211 1234555555665666542 0112567788888999
Q ss_pred HHHHHHHhcC-C---CEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEE
Q 012718 354 KYLYENLLSI-P---NIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR 428 (458)
Q Consensus 354 ~~l~~~L~~~-~---~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lR 428 (458)
+++.+.|++. + ++++..+. .+.++++.++ +.+..++.+.|.++ ||.+.+|..|.... ..++++|
T Consensus 325 ~~l~~~L~~~~~~~~g~~~~~~~------~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~----~~~~~iR 393 (425)
T 1vp4_A 325 TVMLNALEEYFSDIPGVKWVKSE------GGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYD----EPSPSMR 393 (425)
T ss_dssp HHHHHHHHHHSTTSTTCEECCCS------BSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTC----CCCSEEE
T ss_pred HHHHHHHHHhCCCCCceEEecCC------ccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCC----CCCCeEE
Confidence 9999999764 4 58776443 1568999987 45667899999999 99999887543210 1257999
Q ss_pred EeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 429 ASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 429 is~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
|+++.. +++|+++++++|.++++++.+
T Consensus 394 is~~~~-~~e~i~~~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 394 LSFCLP-PDEKIVEGIKRLREVVLEYGK 420 (425)
T ss_dssp EECSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 999973 899999999999999987644
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=264.14 Aligned_cols=341 Identities=16% Similarity=0.159 Sum_probs=250.6
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEE-eCChhHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVF-TKNATEAINLVA 146 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~-t~g~t~a~~~~~ 146 (458)
.+|..+.+..++|+.+.+++.++. +...+....+....+..+++++.+++++|++++++|++ |+|+|+|+++++
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~ 114 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTA-----AALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAA 114 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTT-----TTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcC-----CCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHH
Confidence 355666677788999999887631 01011112233456678899999999999984348998 999999999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHc--CCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~--g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
.++ +++| .+.+....|.. .+...+... |++++.++++ ++..+.. .+++++++|++++++||||.+
T Consensus 115 ~~l----~~~g-v~~v~~~~~~~---~~~~~~~~~~~g~~~~~v~~~-~g~~~~~----~i~~~~~~v~~~~~~nptG~~ 181 (398)
T 2fyf_A 115 FGL----IDKR-SLHLTYGEFSA---KFASAVSKNPFVGEPIIITSD-PGSAPEP----QTDPSVDVIAWAHNETSTGVA 181 (398)
T ss_dssp HHT----CSSC-EEEEECSHHHH---HHHHHHHHCTTSCCCEEEECC-TTCCCCC----CCCTTCSEEEEESEETTTTEE
T ss_pred HHh----cCCC-eEEEeCCHHHH---HHHHHHHHhCCCCceEEEecC-CCCCCCc----cccCCCCEEEEeCcCCCccee
Confidence 988 5666 33344433321 123334555 8899999987 3332222 256789999999999999999
Q ss_pred ccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCC-ceeEEEEeccccccCC----------Cc
Q 012718 225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPT-GIGFLFGKSDLLSAMP----------PF 293 (458)
Q Consensus 225 ~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~-g~G~l~~~~~~~~~l~----------~~ 293 (458)
.|+++|.++ +|+++|+|++|+.+..++++. ++|++++|+||++|+. |+|++++++++++.+. ++
T Consensus 182 ~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~ 256 (398)
T 2fyf_A 182 VAVRRPEGS---DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDF 256 (398)
T ss_dssp CCCCCCTTC---C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGG
T ss_pred cchHHhhhh---cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcE
Confidence 999988776 899999999999988776654 3899999999988876 5999999998876652 11
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
..++.... .+ ......+|++...+.++.++++.+.+.| ++++.++.+++++++.+.|++++++++..+.
T Consensus 257 ~~~~~~~~-------~~---~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 326 (398)
T 2fyf_A 257 LSLPIAVE-------NS---LKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTD 326 (398)
T ss_dssp GCHHHHHH-------HH---TTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCS
T ss_pred EehHHHhh-------hc---ccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCC
Confidence 11110000 00 0013346889988889999999888776 8999999999999999999998889887522
Q ss_pred CCCcCcccc-EEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 373 PSEHVQRAA-LCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 373 ~~~~~~~~~-~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
+ ..+++ +++|.++ +.+..++.+.|.++ ||.+++|.. .++ .+++|||++.+++++|+++++++|+++
T Consensus 327 ~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~-------~~~-~~~iRis~~~~~t~e~i~~~~~~l~~~ 394 (398)
T 2fyf_A 327 P---GLRSQVVGTIDFVDDVDAGTVAKILRAN-GIVDTEPYR-------KLG-RNQLRVAMFPAVEPDDVSALTECVDWV 394 (398)
T ss_dssp G---GGBCSSEEEEEECTTSCHHHHHHHHHHT-TCBCCSCCT-------TTC-SSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred h---hhcCCcEEEEECCCCCCHHHHHHHHHHC-CcEEecCcc-------cCC-CCEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 1 12355 8999986 56788999999998 999987621 122 578999999999999999999999998
Q ss_pred HHh
Q 012718 451 VSF 453 (458)
Q Consensus 451 ~~~ 453 (458)
+++
T Consensus 395 l~~ 397 (398)
T 2fyf_A 395 VER 397 (398)
T ss_dssp HHT
T ss_pred HHh
Confidence 765
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=259.59 Aligned_cols=340 Identities=15% Similarity=0.094 Sum_probs=241.9
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLK 155 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~ 155 (458)
.+++++.+.+++.+.+.....++ ....+++++.+++++|.+ ++++|+|+|+|+..++.++.. .++
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~~~~-~~~ 72 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQ-----------GKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNFSE-FSA 72 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSS-----------SHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHSSC-CCT
T ss_pred CCCCCHHHHHHHHHHHHcCcccC-----------ChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHhcc-cCC
Confidence 46788999999998875421111 235678999999999986 899999999999999998831 167
Q ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHH
Q 012718 156 SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSH 235 (458)
Q Consensus 156 ~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~ 235 (458)
+||+|+++.++|++... .++..|++++.+++++++.+|++++++.+++++++|+++++ ||.+.|+++|.++|+
T Consensus 73 ~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~ 145 (375)
T 2fnu_A 73 DRNEIITTPISFVATAN----MLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCK 145 (375)
T ss_dssp TSCEEEECSSSCTHHHH----HHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHH
T ss_pred CCCEEEECCCccHhHHH----HHHHCCCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHH
Confidence 89999999999997644 34557999999999887888999999999888998888776 999999999999999
Q ss_pred hcCcEEEEeccccCCcccCC--CCCCCCcEEEeccc--CCCCCCceeEEEEe--ccccccCCCccccCcceEeeecCCCC
Q 012718 236 DVGAKVLVDACQSVPHMVVD--VQGLDADFLVASSH--KMCGPTGIGFLFGK--SDLLSAMPPFLGGGEMISDVFLDHST 309 (458)
Q Consensus 236 ~~~~~vivD~a~~~g~~~~~--~~~~~~d~~~~s~~--K~~gp~g~G~l~~~--~~~~~~l~~~~~g~~~~~~~~~~~~~ 309 (458)
++|+++|+|++|+.+..+.. +...+ |+++.|++ |++|+ |+|+++++ +++++.+.+...++.. .. .
T Consensus 146 ~~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~--~~----~- 216 (375)
T 2fnu_A 146 KHSLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGML--KK----D- 216 (375)
T ss_dssp HHTCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEE--ES----S-
T ss_pred HcCCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCccc-cCceEEEeCCHHHHHHHHHHHhcCCc--cc----c-
Confidence 99999999999998876432 33333 67766666 98888 88988885 4455555443322211 00 0
Q ss_pred CCCCCCccCCCCCCHH-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEEEEEe
Q 012718 310 FADPPSRFEAGTPAIG-EAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALCSFNV 387 (458)
Q Consensus 310 ~~~~~~~~~~gt~~~~-~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 387 (458)
+.+|+.++.+.. ....+.+++......+++++.++.+++++++.+.|++++++++..+... .... .++++.+
T Consensus 217 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~ 290 (375)
T 2fnu_A 217 ----FFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLK--DKSSNHLYPILM 290 (375)
T ss_dssp ----SSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCS--SCCCCSCEEEEE
T ss_pred ----ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCC--CCcceEEEEEEe
Confidence 111111111100 0111222223323345788899999999999999999989988654211 1112 3556777
Q ss_pred CC--C-ChHHHHHHHhhhcCeEeccCCCCChhh-HhhcC--------------CCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 388 EN--I-HPTDIATLLDQQYGVATRSGHHCAQPL-HRYLG--------------VNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 388 ~~--~-~~~~~~~~l~~~~gi~~~~g~~~~~~~-~~~~g--------------~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+. . +..++.+.|.++ ||.++.+ |.+.. ...++ ..+++||+++.+++.+|+++++++|++
T Consensus 291 ~~~~~~~~~~l~~~L~~~-gi~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 367 (375)
T 2fnu_A 291 HQKFFTCKKLILESLHKR-GILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLK 367 (375)
T ss_dssp CGGGGGGHHHHHHHHHHT-TEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHC-CCCcccc--ccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 63 3 577899999888 9998832 22110 00111 036899999999999999999999999
Q ss_pred HHHhhh
Q 012718 450 TVSFFN 455 (458)
Q Consensus 450 ~~~~~~ 455 (458)
++++++
T Consensus 368 ~~~~~~ 373 (375)
T 2fnu_A 368 TFESFK 373 (375)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 988754
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=262.76 Aligned_cols=325 Identities=15% Similarity=0.076 Sum_probs=241.8
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CC--CCCCcEEEeCChh
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NA--SDSGEIVFTKNAT 139 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~~v~~t~g~t 139 (458)
+++.|+.+... +.|+.+.+++.+.+.....++.. ....++++.+++++ |. ++ ++|++|+|++
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~----------~g~~~lr~~la~~l~~~~g~~~~~-~~i~~t~g~~ 92 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKS----------AFEESLRAAQRGFFKRRFKIELKE-NELISTLGSR 92 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCT----------TCCHHHHHHHHHHHHHHHSCCCCG-GGEEEESSSH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCH-HHEEECcCcH
Confidence 67888887665 56788888888776322222211 11224555555554 86 44 4999999999
Q ss_pred HHHHHHHHHcCCCCCCC--CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecc
Q 012718 140 EAINLVAYSWGLSNLKS--GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~--g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
+++.+++.++ .++ ||+|+++.++|++ +...++..|++++.++.++++.+++ ++++.+.+++++|+++++
T Consensus 93 ~al~~~~~~~----~~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~p 163 (376)
T 3ezs_A 93 EVLFNFPSFV----LFDYQNPTIAYPNPFYQI----YEGAAKFIKAKSLLMPLTKENDFTP-SLNEKELQEVDLVILNSP 163 (376)
T ss_dssp HHHHHHHHHH----TTTCSSCEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHHHHCSEEEECSS
T ss_pred HHHHHHHHHH----cCCCCCCEEEEecCCcHh----HHHHHHHcCCEEEEcccCCCCCcch-hHHhhhccCCCEEEEcCC
Confidence 9999999988 678 9999999999994 4566777899999999987654555 667777778899999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCC---------CCCCcEEEecccCCCCCCc--eeEE
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQ---------GLDADFLVASSHKMCGPTG--IGFL 280 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~---------~~~~d~~~~s~~K~~gp~g--~G~l 280 (458)
+||||.++| +++|+++|+++|+++|+|++|+.... +..+. ..+.++++.|+||.+|+.| +|++
T Consensus 164 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 243 (376)
T 3ezs_A 164 NNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFI 243 (376)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEE
T ss_pred CCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEE
Confidence 999999999 66788889999999999999985332 12210 4568899999999888666 8999
Q ss_pred EEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 012718 281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360 (458)
Q Consensus 281 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L 360 (458)
+.++++++.+..... ....+++.....++..+++... .+++.+++++++++++.+.|
T Consensus 244 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~l 300 (376)
T 3ezs_A 244 AGDSRLLEKYKAFRA---------------------YLGYTSANAIQKASEAAWLDDR--HAEFFRNIYANNLKLARKIF 300 (376)
T ss_dssp EECHHHHHHHHHHHT---------------------TTCCCCCHHHHHHHHHHHHCSH--HHHHHHHHHHHHHHHHHHHS
T ss_pred eeCHHHHHHHHHHHh---------------------hhcCCCChHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHh
Confidence 998887766543221 1123566666677666666422 26788889999999999998
Q ss_pred hcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhh-hcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 361 LSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQ-QYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
+ ++. .+ ..+.++++.++ +..++.+.|.+ + ||.+.+|..|.... ..++++||+++ .+++|
T Consensus 301 ~---~~~--~~------~~~~~~~~~~~--~~~~~~~~l~~~~-gi~v~~g~~~~~~~----~~~~~iRis~~--~~~~~ 360 (376)
T 3ezs_A 301 K---NTL--IY------PYSFYVYLPVQ--NGENFAKTLYQNE-GIITLPALYLGRNR----IGADYVRLALV--YDTPL 360 (376)
T ss_dssp T---TCC--CC------SBSSEEEEECS--CHHHHHHHHHHHH-CCBCEEGGGGCSTT----TTTTEEEEECC--SCHHH
T ss_pred c---CCC--CC------CcceEEEEECC--CHHHHHHHHHHhC-CEEEeCcHHhCCCC----CCCCeEEEEEc--CCHHH
Confidence 7 332 12 22668888887 67889999987 6 99999988665310 12689999998 49999
Q ss_pred HHHHHHHHHHHHHhh
Q 012718 440 VDEFIHALNETVSFF 454 (458)
Q Consensus 440 i~~l~~~l~~~~~~~ 454 (458)
+++++++|.+++++.
T Consensus 361 i~~~l~~l~~~l~~~ 375 (376)
T 3ezs_A 361 LEKPLEIIETYRENH 375 (376)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988653
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=268.95 Aligned_cols=342 Identities=16% Similarity=0.159 Sum_probs=247.5
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCCCCcEEEeCChh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVFTKNAT 139 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~~v~~t~g~t 139 (458)
++++++|..+..+ +.++.+.+++.+.+....... +.+ ++......+++++++++++ +++++ +|++|+|++
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~--~~~--~y~~~~g~~~lr~~ia~~~~~g~~~~~~-~i~~t~G~~ 142 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGLATRE--GYS--GYGAEQGQGALREAVASTFYGHAGRAAD-EIFISDGSK 142 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSC--CCC--CSTTTTCCHHHHHHHHHHHHTTTTCCGG-GEEEESCHH
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhcccc--CCC--CCCCCCCcHHHHHHHHHHHHcCCCCCHH-HEEEccCHH
Confidence 4678999998766 578899999999887643211 111 1112234567889999998 66655 999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCe----------EEEEeCCCCC--CCCHHHHHHhhcC
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN----------LKFLNLNDDE--SPDLDKLKEMLSR 207 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~----------~~~v~~~~~~--~~d~~~l~~~l~~ 207 (458)
+++..+ .++ +++||+|++++|+|++. ...++..|++ ++.+++++++ ..|++.+ +
T Consensus 143 ~al~~~-~~l----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 208 (449)
T 3qgu_A 143 CDIARI-QMM----FGSKPTVAVQDPSYPVY----VDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----K 208 (449)
T ss_dssp HHHHHH-HHH----HCSSSCEEEEESCCTHH----HHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----C
T ss_pred HHHHHH-HHH----hCCCCEEEEcCCCChhH----HHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----C
Confidence 999998 666 57999999999999954 4555666888 9999987643 3343221 5
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCCC----CCCcEEEecccCCCCCCc
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQG----LDADFLVASSHKMCGPTG 276 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~----~~~d~~~~s~~K~~gp~g 276 (458)
++++|++++++||||.+++ +++|+++|+++|+++|+|++|+... .+..+.. .+.++++.|+||.+|++|
T Consensus 209 ~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 288 (449)
T 3qgu_A 209 RTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTG 288 (449)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTT
T ss_pred CCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcc
Confidence 7899999999999999998 7788888999999999999998522 2222222 246799999999888666
Q ss_pred --eeEEEEecccccc-CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012718 277 --IGFLFGKSDLLSA-MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353 (458)
Q Consensus 277 --~G~l~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~ 353 (458)
+|++++++++++. ...+...+... .....++++.....++.++++......++++.+++++++
T Consensus 289 ~r~G~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 354 (449)
T 3qgu_A 289 VRLGWTVVPKALKYANGEPVHADWNRV--------------MTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENA 354 (449)
T ss_dssp CCCEEEECCTTCBCTTSCBHHHHHHHH--------------HHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEecCHHHHhhhhhhHHHHHHHH--------------hhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 8999999887653 10000000000 011123556656666656655422223678889999999
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF 433 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~ 433 (458)
+++.+.|+++ ++++..+.. +.++++.+++.+..++.+.|.+++||.+.+|..|... .++++||++.
T Consensus 355 ~~l~~~L~~~-g~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~------~~~~iRis~~- 420 (449)
T 3qgu_A 355 QILKTTFTEM-GFSVYGGDD------APYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPA------GEGFVRASAF- 420 (449)
T ss_dssp HHHHHHHHHT-TCCEEESSS------SSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGG------GTTEEEEECC-
T ss_pred HHHHHHHHHC-CCeeeCCCC------eeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCC------CCCeEEEEec-
Confidence 9999999988 777765431 6688999886678889888876559999998866432 1689999976
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 012718 434 YNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++|+++++++|++++++-
T Consensus 421 -~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 421 -GSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp -SCHHHHHHHHHHHHHHHC--
T ss_pred -CCHHHHHHHHHHHHHHHHhc
Confidence 59999999999999998653
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=267.18 Aligned_cols=338 Identities=15% Similarity=0.150 Sum_probs=247.5
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCC-CCcEEEeCCh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASD-SGEIVFTKNA 138 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~-~~~v~~t~g~ 138 (458)
+.+++.|..+... +.|+.+.+++.+.+.....+. + .......++++++++++ |.+. .++|++|+|+
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~----Y----~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~ 127 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQ----Y----SPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGA 127 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGS----C----CCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCC----C----CCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCH
Confidence 3568889887654 467888999888775311110 0 01112346667777765 4331 2389999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC------------CCCCCHHHHHHhhc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND------------DESPDLDKLKEMLS 206 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~------------~~~~d~~~l~~~l~ 206 (458)
++|+..++.++ +++||+|+++++.|++. ...++..|++++.++.++ ++.+|+++|++.++
T Consensus 128 ~~al~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 199 (447)
T 3b46_A 128 NEGILSCLMGL----LNAGDEVIVFEPFFDQY----IPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT 199 (447)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC
T ss_pred HHHHHHHHHHH----cCCCCEEEEeCCCchhH----HHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc
Confidence 99999999998 68999999999999954 455677799999999764 35689999999998
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCC-----CCCCcEEEecccCCCCCC
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQ-----GLDADFLVASSHKMCGPT 275 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~-----~~~~d~~~~s~~K~~gp~ 275 (458)
+++++|++++++||||.+++ +++|+++|++||+++|+|++|+.... ...+. ..+.++++.|+||.+|++
T Consensus 200 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 279 (447)
T 3b46_A 200 SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAAT 279 (447)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCT
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCc
Confidence 89999999999999999986 88999999999999999999985321 11221 236899999999998877
Q ss_pred c--eeEEEE-eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Q 012718 276 G--IGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEME 351 (458)
Q Consensus 276 g--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~ 351 (458)
| +||+++ ++++++.+..... ....+.+.....++.++++..... .++++++++++
T Consensus 280 G~riG~~~~~~~~l~~~l~~~~~---------------------~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~ 338 (447)
T 3b46_A 280 GWRIGWVLSLNAELLSYAAKAHT---------------------RICFASPSPLQEACANSINDALKIGYFEKMRQEYIN 338 (447)
T ss_dssp TSCCEEEECSCHHHHHHHHHHHH---------------------HHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhhEEEEeCCHHHHHHHHHHHh---------------------hccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHH
Confidence 7 999999 8877665543211 112345565666666777765322 36788899999
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC----------------ChHHHHHHHhhhcCeEeccCCCCCh
Q 012718 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI----------------HPTDIATLLDQQYGVATRSGHHCAQ 415 (458)
Q Consensus 352 l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------~~~~~~~~l~~~~gi~~~~g~~~~~ 415 (458)
+++++.+.|+++ ++++..+. .+.++++.++.. +..++.+.|.+++||.+.+|..|..
T Consensus 339 ~~~~l~~~L~~~-g~~~~~~~------~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~ 411 (447)
T 3b46_A 339 KFKIFTSIFDEL-GLPYTAPE------GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYI 411 (447)
T ss_dssp HHHHHHHHHHHH-TCCEECCS------BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSC
T ss_pred HHHHHHHHHHHC-CCeecCCC------eeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCC
Confidence 999999999887 77776543 155888888642 3457888887544999998865432
Q ss_pred hhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 416 PLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 416 ~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
...... .++++|++++ .+++++++++++|.+
T Consensus 412 ~~~~~~-~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 412 KEHEKA-AENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp GGGGGG-GTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred CCccCC-CCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 211000 1579999998 589999999999876
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=258.41 Aligned_cols=296 Identities=19% Similarity=0.260 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHcC-CCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 113 YELARKKVAAFIN-ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 113 ~~~~~~~la~~~g-~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
..++++.++++++ .+++ +|++|+|+|+|+..++.++ +++||+|+++.++|++. ...++..|++++.++++
T Consensus 65 ~~~l~~~la~~~~~~~~~-~v~~~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~v~~~ 135 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPE-QILQTNGATGANLLVLYSL----IEPGDHVISLYPTYQQL----YDIPKSLGAEVDLWQIE 135 (375)
T ss_dssp CHHHHHHHHTTSSSCCGG-GEEEESHHHHHHHHHHHHH----CCTTCEEEEEESSCTHH----HHHHHHTTCEEEEEEEE
T ss_pred hHHHHHHHHHHhccCChh-hEEEcCChHHHHHHHHHHh----cCCCCEEEEeCCCchhH----HHHHHHcCCEEEEEecc
Confidence 4588999999984 5544 9999999999999999998 78999999999999954 45567779999999987
Q ss_pred CC--CCCCHHHHHHhhcCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc-C-C-CCCCCCcE
Q 012718 192 DD--ESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-V-D-VQGLDADF 263 (458)
Q Consensus 192 ~~--~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-~-~-~~~~~~d~ 263 (458)
++ +.+|++++++++++++++|++++++||||.++| +++|.++|++||+++|+|++|+..... . . .+..+.++
T Consensus 136 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i 215 (375)
T 3op7_A 136 EENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGI 215 (375)
T ss_dssp GGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEE
T ss_pred ccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEE
Confidence 43 457999999999999999999999999999999 999999999999999999999864331 1 1 11234678
Q ss_pred EEecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 264 LVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 264 ~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
+++|+||.+|++| +|++++++++++.+...... ...+++.....++..+++.....
T Consensus 216 ~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~- 273 (375)
T 3op7_A 216 AVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDY---------------------TMICAGVFDDLVAQLALAHYQEI- 273 (375)
T ss_dssp EEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGG---------------------TTSCCCHHHHHHHHHHHHTHHHH-
T ss_pred EEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhh---------------------hccCCCcHHHHHHHHHHhccHHH-
Confidence 9999999888666 79999988887776644321 12244555555555666654332
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHh-hhcCeEeccCCCCChhhHh
Q 012718 342 MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLD-QQYGVATRSGHHCAQPLHR 419 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~ 419 (458)
+++.+++++++++++.+.|++.+++.+..+.. +.++++.++ +.+..++.+.+. ++ ||.+.+|..+
T Consensus 274 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ll~~~-gi~v~~g~~~------ 340 (375)
T 3op7_A 274 LERNRHILEENLAILDQWIEEEPLVSYIRPAV------VSTSFVKIAVDMPMEDFCLQLLQEH-GVLLVPGNRF------ 340 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEECCCSS------SSCEEEEECCSSCHHHHHHHHHHHH-CEECEEGGGG------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEecCCC------eEEEeEEcCCCCCHHHHHHHHHHhC-CEEEeChhhh------
Confidence 67778888999999999999888898776542 345666665 346778888874 66 9999988743
Q ss_pred hcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 420 YLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 420 ~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+.++++|++++ .+.+++++++++|.++++++.+
T Consensus 341 --~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 341 --ERDGYVRLGFA--CEQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp --TCTTEEEECCC--SCHHHHHHHHHHHHHHHGGGC-
T ss_pred --CCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHhh
Confidence 33689999988 4569999999999999988754
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=269.06 Aligned_cols=344 Identities=15% Similarity=0.140 Sum_probs=244.2
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCc----chhhhHHHHHHHHHHHHHHHHcC--------CCCCCcEE
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGI----HFLSAKATDEYELARKKVAAFIN--------ASDSGEIV 133 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~g--------~~~~~~v~ 133 (458)
.+++.|..+......+.+.+++.+.......... |. ...++......+++++.++++++ ++++ +|+
T Consensus 38 ~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~-~v~ 115 (435)
T 3piu_A 38 NGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKN-GESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-HLV 115 (435)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEET-TEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-GEE
T ss_pred CCeEEeccccccccHHHHHHHHHhCccccccccc-cccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH-HEE
Confidence 5688998888777777666666654332110000 00 00111122334578888888887 4444 999
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-HcCCeEEEEeCCCC--CCCCHHHHHHhhcC---
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-KTGANLKFLNLNDD--ESPDLDKLKEMLSR--- 207 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-~~g~~~~~v~~~~~--~~~d~~~l~~~l~~--- 207 (458)
+|+|+++|+..++.++ .++||.|+++.++|++... .+. ..|++++.++.+++ +.+|++++++.+++
T Consensus 116 ~~~gg~~a~~~~~~~l----~~~gd~vl~~~p~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 187 (435)
T 3piu_A 116 LTAGATSANETFIFCL----ADPGEAVLIPTPYYPGFDR----DLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEK 187 (435)
T ss_dssp EEEHHHHHHHHHHHHH----CCTTCEEEEEESCCTTHHH----HTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHH
T ss_pred EcCChHHHHHHHHHHh----cCCCCeEEECCCccccHHH----HHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHh
Confidence 9999999999999998 6899999999999996543 233 56999999998854 45799999999876
Q ss_pred ---CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc----CCC----CC---------CCCcEE
Q 012718 208 ---KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV----VDV----QG---------LDADFL 264 (458)
Q Consensus 208 ---~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~----~~~----~~---------~~~d~~ 264 (458)
++++|++++++||||.++| +++|+++|++||+++|+|++|+.+... ..+ .+ .+.+++
T Consensus 188 ~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~ 267 (435)
T 3piu_A 188 RNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHV 267 (435)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEE
T ss_pred cCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEE
Confidence 7899999999999999998 478888899999999999999853221 111 11 223488
Q ss_pred EecccCCCCCCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH--H
Q 012718 265 VASSHKMCGPTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS--T 339 (458)
Q Consensus 265 ~~s~~K~~gp~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~--~ 339 (458)
++|+||.+|..| +|++++++ .+.+.+..... .++.+.....++.+.++... .
T Consensus 268 i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~~ 324 (435)
T 3piu_A 268 VYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-----------------------FGLVSSQTQHLLSAMLSDKKLTK 324 (435)
T ss_dssp EEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG-----------------------GSCCCHHHHHHHHHHHHCHHHHH
T ss_pred EEeeecccCCCceeEEEEEeCCHHHHHHHHHHhh-----------------------cCCCCHHHHHHHHHHhcChHHHH
Confidence 999999888666 89999954 44433321110 12334444455555554222 1
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------ChHHHHHHHhhhcCeEeccCCC
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------HPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
..+++.+++++++++++.+.|++. ++++..+.. +.++++.++.. +..++.+.|.+++||.+.+|..
T Consensus 325 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~------g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~ 397 (435)
T 3piu_A 325 NYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNA------GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSS 397 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCS------SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCe------eEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcc
Confidence 135677888999999999999988 888765441 46888988642 2457888887666999998875
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
|.. ..++++||+++.. +++++++++++|.++++++.+
T Consensus 398 ~~~------~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~~ 434 (435)
T 3piu_A 398 CHC------TEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYYN 434 (435)
T ss_dssp GTC------SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC-
T ss_pred cCC------CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHhC
Confidence 532 1268999999864 999999999999999987653
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=272.15 Aligned_cols=358 Identities=14% Similarity=0.120 Sum_probs=255.3
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCC---cEEEeCChhHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELARKKVAAFINASDSG---EIVFTKNATEA 141 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~---~v~~t~g~t~a 141 (458)
+.+.|..+ .+++|+.+.+++.+.+.... +++....+..+....+..+.+++.+++++|++.++ +|++++|+ ++
T Consensus 45 ~~i~L~a~-e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~a 122 (483)
T 1rv3_A 45 VGLELIAS-ENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PA 122 (483)
T ss_dssp SSEECCTT-CCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HH
T ss_pred cCeEEEcC-CCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HH
Confidence 45777544 35789999999988876532 33322112222234566677999999999998542 26666655 88
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHH----HHHHcC--CeEEEEeCC-CCCCCCHHHHHHhhc-CCceEEE
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL----VAQKTG--ANLKFLNLN-DDESPDLDKLKEMLS-RKTKLVV 213 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~----~a~~~g--~~~~~v~~~-~~~~~d~~~l~~~l~-~~~~~v~ 213 (458)
+..++.++ +++||+|++++++|.++...+.. .++..| .+++.++++ +++.+|+++|++.++ .++++|+
T Consensus 123 n~~~~~al----l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi 198 (483)
T 1rv3_A 123 NFAVYTAL----VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLII 198 (483)
T ss_dssp HHHHHHHH----TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHh----cCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEE
Confidence 88878887 78999999999999877543210 011123 455556556 568899999999998 7899999
Q ss_pred EecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCC---CCcEEEecccC-CCCCCceeEEEEecccccc
Q 012718 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL---DADFLVASSHK-MCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 214 ~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~---~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~ 289 (458)
+ +++|++ .+.|+++|.++|+++|+++++|++|+.|....+.... ++|++++|+|| +.||.| |+++++++...
T Consensus 199 ~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~- 274 (483)
T 1rv3_A 199 A-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS- 274 (483)
T ss_dssp E-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-
T ss_pred E-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcchhhh-
Confidence 9 888888 8999999999999999999999999876654444333 68999999999 557887 99999987643
Q ss_pred CCCccccCcceEeeecCCC-CCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Q 012718 290 MPPFLGGGEMISDVFLDHS-TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRI 368 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~ 368 (458)
+. ..++.... + ... ...........|+++...++++.++++.....+++++.+++.++++++.+.|.+. |+++
T Consensus 275 ~~--~~~g~~~~--y-~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 348 (483)
T 1rv3_A 275 VD--PKTGKEIL--Y-NLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKI 348 (483)
T ss_dssp ---------CCB--C-CHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred hc--cccCcchh--h-HHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEe
Confidence 32 11111000 0 000 0000000112578999999999999988765568899999999999999999988 8988
Q ss_pred eCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEec----cCCCCChhhHhhcCCCCeEEEeeCCCCC----HH
Q 012718 369 YGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATR----SGHHCAQPLHRYLGVNASARASLHFYNT----KE 438 (458)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~----~g~~~~~~~~~~~g~~~~lRis~~~~~t----~~ 438 (458)
..+... ..++++.+. +.+..++.+.|.+. ||.++ +|..|. ++ ++++|||++.+++ ++
T Consensus 349 ~~~~~~-----~~~~~v~~~~~g~~~~~~~~~L~~~-gI~v~~~~~pg~~~~------~~-~~~iRis~~~~~t~g~~~e 415 (483)
T 1rv3_A 349 VTGGSD-----NHLILVDLRSKGTDGGRAEKVLEAC-SIACNKNTCPGDKSA------LR-PSGLRLGTPALTSRGLLEK 415 (483)
T ss_dssp GGGSCS-----SSEEEEEGGGGTCCHHHHHHHHHHT-TEECEEECCSSCSCT------TS-CCEEEEECHHHHHTTCCHH
T ss_pred ccCCCC-----CceEEEeccCCCCCHHHHHHHHHhC-CcEEecCCCCCCCcC------CC-CceEEeecCCcccCCCCHH
Confidence 764311 235556654 56778888888877 99998 776432 22 5799999997777 99
Q ss_pred HHHHHHHHHHHHHHh
Q 012718 439 DVDEFIHALNETVSF 453 (458)
Q Consensus 439 di~~l~~~l~~~~~~ 453 (458)
|++++++.|.++++.
T Consensus 416 di~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 416 DFQKVAHFIHRGIEL 430 (483)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998875
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=255.42 Aligned_cols=317 Identities=13% Similarity=0.143 Sum_probs=237.2
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+++++.|..+... ++++.+.+++.+.+.....++.. . .+++|+++|+++|++++ +|++|+|+|+++.
T Consensus 14 g~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~----------~-~~~lr~~la~~~~~~~~-~i~~t~g~~~al~ 81 (350)
T 3fkd_A 14 SSEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEP----------D-AGTLRQMLAKRNSVDNN-AILVTNGPTAAFY 81 (350)
T ss_dssp --CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCT----------T-CHHHHHHHHHHTTCCGG-GEEEESHHHHHHH
T ss_pred cccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCC----------c-HHHHHHHHHHHhCcCHH-HEEEcCCHHHHHH
Confidence 3677888887554 67888999988876433333221 1 14799999999998765 9999999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CCCCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
+++.++ . ||+|+++.++|++ +...++..|++++.++. ++++.+++ +++++|++++++||||
T Consensus 82 ~~~~~l----~--gd~Vi~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~~--------~~~~~v~i~~p~nptG 143 (350)
T 3fkd_A 82 QIAQAF----R--GSRSLIAIPSFAE----YEDACRMYEHEVCFYPSNEDIGEADF--------SNMDFCWLCNPNNPDG 143 (350)
T ss_dssp HHHHHT----T--TCEEEEEESCCHH----HHHHHHHTTCEEEEEETTSCGGGSCC--------TTCSEEEEESSCTTTC
T ss_pred HHHHHH----C--CCEEEEeCCCcHH----HHHHHHHcCCeEEEEecCCccccCcc--------CCCCEEEEeCCCCCcC
Confidence 999987 3 9999999999995 45666778999999998 65343443 6789999999999999
Q ss_pred ccccHHHHHHHHHhcC-cEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcc
Q 012718 223 SILPIEEIVHWSHDVG-AKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~-~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~ 294 (458)
.++|++++.++++..+ .++|+|++|+.... ...+...+.++++.|+||.+|++| +|++++++++++.+....
T Consensus 144 ~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 223 (350)
T 3fkd_A 144 RLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFS 223 (350)
T ss_dssp CCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhC
Confidence 9999999999988765 79999999984322 112334557799999999888655 899999888776655332
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
. ..+++.....++..+++....+ .+++++.. ++++++.+.|++++++++..+.
T Consensus 224 ~-----------------------~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~-- 276 (350)
T 3fkd_A 224 T-----------------------PWAVNALAIEAAKFILIHPAQF-TLPIRKWQ-RNTVDFITALNRLDGVEVHPSG-- 276 (350)
T ss_dssp C-----------------------TTCSCHHHHHHHHHHHHCTTTT-CCCHHHHH-HHHHHHHHHHHHSTTEEECCCS--
T ss_pred C-----------------------CCCCCHHHHHHHHHHHhCHHHH-HHHHHHHH-HHHHHHHHHHhcCCCcEECCCC--
Confidence 1 2345555555555555432211 23344444 8889999999888899885433
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHhh-hcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLDQ-QYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++++++.++..+..++.+.|.+ + ||.+++|..|... .++++|||++ +.+|+++++++|+++.++
T Consensus 277 -----~~~~~~~~~~~~~~~l~~~L~~~~-gi~v~~g~~f~~~------~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 277 -----TTFFLLRLKKGTAAELKKYMLEEY-NMLIRDASNFRGL------DESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp -----SSEEEEEESSSCHHHHHHHHHHTT-CEECEECTTSTTC------CTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred -----CcEEEEECCCCCHHHHHHHHHHHC-CEEEEeCccCCCC------CCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 6788888886578899999998 6 9999999866321 2679999987 789999999999998864
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-31 Score=263.59 Aligned_cols=381 Identities=13% Similarity=0.057 Sum_probs=259.8
Q ss_pred CCCccchhhhhcCC-CCcccccccCCCCeEEecCCCCCCC-cHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHH
Q 012718 41 STDSVSLGHITRPD-FPILHQEVYGSKKLVYLDNAATSQK-PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARK 118 (458)
Q Consensus 41 ~~~~~~~~~~~r~~-f~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (458)
..+..++.+.+++. .|......+ ..|+++-..++. +..+.+.+..++ |+....+..+....+..+++++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~~~~~~~~~~~~le~~~~~ 120 (486)
T 1js3_A 50 PDTFEDILQDVEKIIMPGVTHWHS----PYFFAYFPTASSYPAMLADMLCGAI-----GCIGFSWAASPACTELETVMMD 120 (486)
T ss_dssp CCCHHHHHHHHHHTTGGGCCCTTS----TTBCSSSCCCCCHHHHHHHHHHHHH-----CCCCSSGGGCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCC----CCceEeCCCCCCHHHHHHHHHHHHh-----CcCccccccChhHHHHHHHHHH
Confidence 33444555555543 344433222 235666544443 444556666654 2222333444556677778999
Q ss_pred HHHHHcCCCCC--------CcEEEeCChhHHHHHHHHHcCCCCCC-----CC---------C-EEEEcCCCCccchHHHH
Q 012718 119 KVAAFINASDS--------GEIVFTKNATEAINLVAYSWGLSNLK-----SG---------D-EVILTVAEHHSAIVPWQ 175 (458)
Q Consensus 119 ~la~~~g~~~~--------~~v~~t~g~t~a~~~~~~~l~~~~~~-----~g---------~-~vl~~~~~~~s~~~~~~ 175 (458)
.+++++|.+.. ..+++|+|+|+|+..++.+++...++ .| + .|+++.++|++ +.
T Consensus 121 ~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s----~~ 196 (486)
T 1js3_A 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS----VE 196 (486)
T ss_dssp HHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH----HH
T ss_pred HHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHH----HH
Confidence 99999999842 26899999999999998775210011 03 2 38889999995 46
Q ss_pred HHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCc------eEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccC
Q 012718 176 LVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT------KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249 (458)
Q Consensus 176 ~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~------~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~ 249 (458)
..++..|++++.+|+++++.+|+++|+++|++++ .+|++++++|+||.+.|+++|+++|+++|+++|+|++|+.
T Consensus 197 ~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~ 276 (486)
T 1js3_A 197 RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAG 276 (486)
T ss_dssp HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGG
T ss_pred HHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHH
Confidence 6677789999999998889999999999998755 3899999999999999999999999999999999999997
Q ss_pred CcccC-CCCC-----CCCcEEEecccCCCC-CCceeEEEEeccc--cccCC---CccccCcceEeeecCCCCCCCCCCcc
Q 012718 250 PHMVV-DVQG-----LDADFLVASSHKMCG-PTGIGFLFGKSDL--LSAMP---PFLGGGEMISDVFLDHSTFADPPSRF 317 (458)
Q Consensus 250 g~~~~-~~~~-----~~~d~~~~s~~K~~g-p~g~G~l~~~~~~--~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (458)
+.... +... .++|++++|+||+++ |.|+|+++++++. .+.+. .+..+.........+...+ ..
T Consensus 277 ~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~-----~~ 351 (486)
T 1js3_A 277 SAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHW-----QL 351 (486)
T ss_dssp GGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGS-----SS
T ss_pred HHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCcccc-----CC
Confidence 76533 1211 258999999999654 7889999998753 34442 2222111100000000000 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC--hHHH
Q 012718 318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH--PTDI 395 (458)
Q Consensus 318 ~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~ 395 (458)
+.+... ..+++.++++.+...|++++.++..++++++.+.|++++++++..++. .++++|++++.+ ..++
T Consensus 352 ~~~rr~--~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~------~~~v~f~~~~~~~~~~~l 423 (486)
T 1js3_A 352 PLGRRF--RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT------LGLVCFRLKGSDGLNEAL 423 (486)
T ss_dssp CSCCCC--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC------SSEEEEEESSCHHHHHHH
T ss_pred CCCCch--hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCc------eeEEEEEecChHHHHHHH
Confidence 111111 245667777777667789999999999999999999999999876431 678999987532 4678
Q ss_pred HHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 396 ATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 396 ~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.|.++ |+.+..+. .++..+++|+++ +.+++.+||+++++.|+++++++.+
T Consensus 424 ~~~L~~~-g~~~~~~~--------~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 424 LERINSA-RKIHLVPC--------RLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (486)
T ss_dssp HHHHHHH-TSCBCEEE--------EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhc-CCEEEEEE--------EECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8888888 76543221 123357899996 5778999999999999999876543
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-32 Score=259.10 Aligned_cols=329 Identities=15% Similarity=0.089 Sum_probs=239.8
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
+++++|+++..+++++.+.+++.+.... + ...+......+++++.+++++| + +.++++|+|+|+|+.++
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~-----~----~~~~~~~~~~~~l~~~la~~~g-~-~~~v~~~~~gt~a~~~a 75 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSSG-----Q----AGPYGTDELTAQVKRKFCEIFE-R-DVEVFLVPTGTAANALC 75 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSS-----C----CCSTTCSHHHHHHHHHHHHHHT-S-CCEEEEESCHHHHHHHH
T ss_pred CceEeeccCCccCCCHHHHHHHHhhccC-----c----ccccccchHHHHHHHHHHHHhC-C-CCcEEEeCCccHHHHHH
Confidence 5678999888888899999998876311 0 1112234567789999999999 4 33699999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHc--CCeEEEEeCCCCCCCCHHHHHH-hhcC-------CceEEEEe
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKT--GANLKFLNLNDDESPDLDKLKE-MLSR-------KTKLVVIH 215 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~--g~~~~~v~~~~~~~~d~~~l~~-~l~~-------~~~~v~~~ 215 (458)
+.++ .++||+|+++.++|.+.... ..+... |++++.++.+ ++.+|++++++ .+++ ++++|+++
T Consensus 76 l~~~----~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~ 148 (356)
T 1v72_A 76 LSAM----TPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSIT 148 (356)
T ss_dssp HHTS----CCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEE
T ss_pred HHHh----cCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEE
Confidence 9887 57899999999998864322 013445 8999999875 57789999999 8876 67999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCC----CCCcEEEecccCCCCCCceeEEEEecc
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG----LDADFLVASSHKMCGPTGIGFLFGKSD 285 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~----~~~d~~~~s~~K~~gp~g~G~l~~~~~ 285 (458)
+++| ||.++| +++|.++|++||+++|+|++|+.+.. ...... .+.|+++.|+||+.+|.|+|+++.+++
T Consensus 149 ~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~g~~~G~g~~~~~~~ 227 (356)
T 1v72_A 149 QATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTS 227 (356)
T ss_dssp SSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGG
T ss_pred cCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccCCCcCccEEEEECHH
Confidence 9876 999666 78999999999999999999974211 111111 257899999999855777789999888
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
+++.+...... .|+.......+...+++.+.+..+.++.++.+++++++.+.|+++++
T Consensus 228 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g 285 (356)
T 1v72_A 228 LATEMSYRRKR----------------------AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGG 285 (356)
T ss_dssp GHHHHHHHHHH----------------------TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHhhHHHHhhc----------------------cCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 77655422110 01111111223333444444323556778888999999999998889
Q ss_pred EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
+++..+.. ++++++.++ .++.+.|.++ ||.+++|. ++ ++++|++++..++++|++++++
T Consensus 286 ~~~~~~~~------~~~~~~~~~----~~~~~~l~~~-gi~v~~g~---------~~-~~~iRi~~~~~~~~~~i~~~~~ 344 (356)
T 1v72_A 286 VEVLGGTE------ANILFCRLD----SAMIDALLKA-GFGFYHDR---------WG-PNVVRFVTSFATTAEDVDHLLN 344 (356)
T ss_dssp EEEESCCC------SSEEEEEEC----HHHHHHHHHT-TCBCBCSS---------SS-TTEEEEECCTTCCHHHHHHHHH
T ss_pred cEEccCCC------ccEEEEEcC----HHHHHHHHhc-CeEEeccc---------cC-CCeEEEEecCCCCHHHHHHHHH
Confidence 98875532 668888875 4788999888 99998875 12 5789999998899999999999
Q ss_pred HHHHHHHhhhc
Q 012718 446 ALNETVSFFNV 456 (458)
Q Consensus 446 ~l~~~~~~~~~ 456 (458)
+|++++++..+
T Consensus 345 ~l~~~l~~~~~ 355 (356)
T 1v72_A 345 QVRLAADRTQE 355 (356)
T ss_dssp HHHHTC-----
T ss_pred HHHHHHHhhcc
Confidence 99998876543
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=266.45 Aligned_cols=337 Identities=15% Similarity=0.108 Sum_probs=245.1
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g~ 138 (458)
.++++|+.+... ++|+.+.+++.+.+....... +.......++++.++++++ .++.++|++|+|+
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~--------y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~ 94 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQ--------YTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGA 94 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGS--------CCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccC--------CCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCc
Confidence 678999999877 678999999998876421100 0001122356666776665 4442499999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-----------CCCCCHHHHHHhhcC
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-----------DESPDLDKLKEMLSR 207 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-----------~~~~d~~~l~~~l~~ 207 (458)
++++..++.++ +++||+|+++.++|++. ...++..|++++.+++++ ++.+|++++++.+++
T Consensus 95 ~~a~~~~~~~~----~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~ 166 (410)
T 3e2y_A 95 YGSLFNSIQGL----VDPGDEVIIMVPFYDCY----EPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS 166 (410)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT
T ss_pred HHHHHHHHHHh----cCCCCEEEEeCCCchhh----HHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC
Confidence 99999999998 68999999999999954 555667799999998862 345799999999988
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccCCCC----CCCCcEEEecccCCCCCCc
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVVDVQ----GLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~~~~----~~~~d~~~~s~~K~~gp~g 276 (458)
++++|++++++||||.+++ +++|+++|+++|+++|+|++|+... .+.++. ..+.++++.|+||.+|++|
T Consensus 167 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G 246 (410)
T 3e2y_A 167 KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG 246 (410)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG
T ss_pred CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC
Confidence 9999999999999999975 8899999999999999999998422 111221 2245689999999888667
Q ss_pred --eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH------HHhCHHHHHHH
Q 012718 277 --IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL------STIGMQKIHAY 348 (458)
Q Consensus 277 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~------~~~g~~~~~~~ 348 (458)
+|++++++++++.+..... ....+++.....++..+++.. ....++++.++
T Consensus 247 ~r~G~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 3e2y_A 247 WKLGWSIGPAHLIKHLQTVQQ---------------------NSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKE 305 (410)
T ss_dssp GCCEEEECCHHHHHHHHHHHH---------------------TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHH
T ss_pred ceEEEEEECHHHHHHHHHHHH---------------------hhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHH
Confidence 8999999887766543221 112345655666666666531 12236788899
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC----C--------hHHHHHHHhhhcCeEeccCCCCChh
Q 012718 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI----H--------PTDIATLLDQQYGVATRSGHHCAQP 416 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~--------~~~~~~~l~~~~gi~~~~g~~~~~~ 416 (458)
++++++++.+.|+++ ++++..+.. +.++++.+... + ..++.+.+.+++||.+.+|..|...
T Consensus 306 ~~~~~~~l~~~L~~~-g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~ 378 (410)
T 3e2y_A 306 LEVKRDRMVRLLNSV-GLKPIVPDG------GYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDS 378 (410)
T ss_dssp HHHHHHHHHHHHHTT-TCEEEBCSB------SSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCT
T ss_pred HHHHHHHHHHHHHHC-CCeecCCCc------cEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCC
Confidence 999999999999998 888765541 55778777531 1 1367776544349999998866432
Q ss_pred hHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 417 LHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 417 ~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.... ...+++||+++ .+++++++++++|++
T Consensus 379 ~~~~-~~~~~iRis~~--~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 379 KSKP-HFEKLVRFCFI--KKDSTLDAAEEIFRA 408 (410)
T ss_dssp TTHH-HHTTEEEEECC--CCHHHHHHHHHHHHT
T ss_pred CCCC-CCCCEEEEEEc--CCHHHHHHHHHHHHh
Confidence 1000 01589999988 499999999999875
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=264.31 Aligned_cols=334 Identities=13% Similarity=0.143 Sum_probs=241.4
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHH------------HHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC--------
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYY------------EAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN-------- 125 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g-------- 125 (458)
.+++.|+.+.....++.+.+++.+.. .....++. .....+++++++++++
T Consensus 36 ~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----------~~g~~~lr~~la~~~~~~~g~~~~ 105 (428)
T 1iay_A 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQD----------YHGLPEFRKAIAKFMEKTRGGRVR 105 (428)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCC----------TTCCHHHHHHHHHHHHHHTTTCSC
T ss_pred CceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCC----------CCCcHHHHHHHHHHHHHhcCCCCC
Confidence 56889988777766777777776431 11111111 1124477888888876
Q ss_pred CCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHH
Q 012718 126 ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKE 203 (458)
Q Consensus 126 ~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~ 203 (458)
++++ +|++|+|+++++..++.++ .++||+|++++++|++... .++...|++++.++.++ ++.+|++++++
T Consensus 106 ~~~~-~i~~~~G~~~ai~~~~~~~----~~~gd~Vl~~~p~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 177 (428)
T 1iay_A 106 FDPE-RVVMAGGATGANETIIFCL----ADPGDAFLVPSPYYPAFNR---DLRWRTGVQLIPIHCESSNNFKITSKAVKE 177 (428)
T ss_dssp CCTT-SCEEEEHHHHHHHHHHHHH----CCTTCEEEEESSCCTTHHH---HTTTTTCCEEEEECCCTTTTTCCCHHHHHH
T ss_pred CChh-hEEEccChHHHHHHHHHHh----CCCCCeEEEccCCCcchHH---HHHHhcCCEEEEeecCCccCCcCCHHHHHH
Confidence 5554 8999999999999999988 6799999999999996432 23345699999999874 34679999999
Q ss_pred hhcC------CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---c-CC---CCC------CCC
Q 012718 204 MLSR------KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---V-VD---VQG------LDA 261 (458)
Q Consensus 204 ~l~~------~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~-~~---~~~------~~~ 261 (458)
.+++ ++++|++++++||||.++| +++|+++|+++|+++|+|++|+.... + .+ +.. +++
T Consensus 178 ~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (428)
T 1iay_A 178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNK 257 (428)
T ss_dssp HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCT
T ss_pred HHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCC
Confidence 8863 6899999999999999999 89999999999999999999985321 1 11 111 124
Q ss_pred c--EEEecccCCCCCCc--eeEEEE-eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 262 D--FLVASSHKMCGPTG--IGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 262 d--~~~~s~~K~~gp~g--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
| +++.|+||.+|.+| +|++++ ++++++.+..... ..+.+.....++..+++.
T Consensus 258 d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~a~~~~l~~ 314 (428)
T 1iay_A 258 DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSS-----------------------FGLVSTQTQYFLAAMLSD 314 (428)
T ss_dssp TSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHT-----------------------TSCCCHHHHHHHHHHTTC
T ss_pred CcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHh-----------------------cccCCHHHHHHHHHHhcC
Confidence 6 88999999998777 799999 4556554432110 123455555555555543
Q ss_pred HH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------ChHHHHHHHhhhcCeEe
Q 012718 337 LS--TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------HPTDIATLLDQQYGVAT 407 (458)
Q Consensus 337 ~~--~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~l~~~~gi~~ 407 (458)
.. +..++++.++++++++++.+.|+++ ++++..+. .+.++++++++. +..++.+.|.+++||.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v 387 (428)
T 1iay_A 315 EKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNN------AGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNV 387 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS------SSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCC------eeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEE
Confidence 21 1135778889999999999999887 77654432 266888988642 23478888876569999
Q ss_pred ccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 408 RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 408 ~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
++|..|... .++++||+++ ..+++|+++++++|++++++.
T Consensus 388 ~~~~~~~~~------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 388 SPGSSFECQ------EPGWFRVCFA-NMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp EEGGGGTCS------SSSEEEEECS-SSCHHHHHHHHHHHHHHHHTT
T ss_pred eCchhhCCC------CCCEEEEEEe-cCCHHHHHHHHHHHHHHHhcc
Confidence 987644221 1578999999 579999999999999998754
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=255.95 Aligned_cols=334 Identities=16% Similarity=0.190 Sum_probs=250.0
Q ss_pred CCCeEEecCCCCC--CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 65 SKKLVYLDNAATS--QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 65 ~~~~i~l~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
++.+++|..+... +.++.+.+++.+.+..+..... .+.......+..+++++.+++++|.+ ..+++++|++++
T Consensus 58 g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~--~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~ 132 (409)
T 3kki_A 58 SPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLF--MSASFLQNDYDKPMIEKRLAKFTGFD---ECLLSQSGWNAN 132 (409)
T ss_dssp CTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCC--SBGGGGCSTTTSCHHHHHHHHHHTCS---EEEEESCHHHHH
T ss_pred CCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCC--ccccccCCcHHHHHHHHHHHHHhCCC---eEEEecchHHHH
Confidence 3566777655422 3578899999998876432211 11111222344567889999999987 456667778999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcC
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNML 221 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t 221 (458)
..++.++ +++||.|+++++.|++... .++..|++++.++. .|++++++.+++ ++++|++++++|||
T Consensus 133 ~~~l~~~----~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~npt 199 (409)
T 3kki_A 133 VGLLQTI----CQPNTNVYIDFFAHMSLWE----GARYANAQAHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTL 199 (409)
T ss_dssp HHHHHHH----CCTTCEEEEETTSCHHHHH----HHHHTTCEEEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTT
T ss_pred HHHHHHh----cCCCCEEEECCCcCHHHHH----HHHHcCCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCC
Confidence 9999988 7899999999999996543 34556999988875 389999999976 58999999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCccc---------CCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCC
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPP 292 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~ 292 (458)
|.+.|+++|.++|+++|+++|+|++|+.+... .++ ..++|+++.|+||.+|+. .|+++.++++++.+..
T Consensus 200 G~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~di~~~s~sK~~~~~-gg~v~~~~~~~~~~~~ 277 (409)
T 3kki_A 200 GTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYR-AGAIWCNNEVNRCVPF 277 (409)
T ss_dssp CCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTC-GGGCSEEEEESSSTTCSS-CEEEEESSSGGGTHHH
T ss_pred CCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCC-CCCCCEEEeecchhhCCC-ceEEEECHHHHHHHHH
Confidence 99999999999999999999999999865431 112 124799999999988876 4999999988766543
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
....+. + .++.+...++++.++++.+.+. ++++++++++++++.+.|+++ ++++..
T Consensus 278 ~~~~~~------------------~-~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~-- 333 (409)
T 3kki_A 278 ISYPAI------------------F-SSTLLPYEAAGLETTLEIIESA--DNRRQHLDRMARKLRIGLSQL-GLTIRS-- 333 (409)
T ss_dssp HCHHHH------------------H-SBCCCHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTT-TCCCCC--
T ss_pred hCcCcc------------------c-cCCCcHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCccCC--
Confidence 211110 1 2345666777777888887764 688889999999999999988 665441
Q ss_pred CCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.++++++.++.. +..++.+.|.++ ||.+.+..++..+ ...+++|++++.+++++|+++++++|++++
T Consensus 334 ------~~~~~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~-----~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 334 ------ESQIIGLETGDERNTEKVRDYLESN-GVFGSVFCRPATS-----KNKNIIRLSLNSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp ------SSSEEEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSC-----TTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ------CCCEEEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcC-----CCCcEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 267888887642 355788999988 9998775432211 125799999998899999999999999998
Q ss_pred Hhh
Q 012718 452 SFF 454 (458)
Q Consensus 452 ~~~ 454 (458)
++.
T Consensus 402 ~~~ 404 (409)
T 3kki_A 402 NYG 404 (409)
T ss_dssp HHS
T ss_pred hcC
Confidence 764
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=260.20 Aligned_cols=359 Identities=17% Similarity=0.122 Sum_probs=250.2
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
..+++|+ +.++...+.+.+++.+.+.. .++. .....+.+..+..+++++.+++++|.+. .+++++|+++|+..+
T Consensus 66 ~~~~~lg-~~~~~~~p~v~~~~~~~~~~--~~~~-~~~~~~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a~~~a 139 (474)
T 1wyu_B 66 TTFYPLG-SCTMKYNPKLHEEAARLFAD--LHPY-QDPRTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTG 139 (474)
T ss_dssp TSCCCBT-TTCCCCCCHHHHHHHHTTSS--CCTT-SCGGGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHH
T ss_pred cCccccc-cccccCCHHHHHHHHHHHHh--cCCC-CchhhChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHHHHHHH
Confidence 4568888 44444445566665554211 1221 1111345667888899999999999873 567889999999986
Q ss_pred HHHcCCCCCCCCC-----EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCc
Q 012718 146 AYSWGLSNLKSGD-----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM 220 (458)
Q Consensus 146 ~~~l~~~~~~~g~-----~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~ 220 (458)
+.++.....++|| +|+++.+.|++. ...++..|++++.++.++++.+|+++|++++++++++|+++++ |+
T Consensus 140 l~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~----~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~ 214 (474)
T 1wyu_B 140 ILIIRAYHEDRGEGRTRRVVLVPDSAHGSN----PATASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NT 214 (474)
T ss_dssp HHHHHHHHHHTTCTTTCCEEEEETTSCTHH----HHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CT
T ss_pred HHHHHHHHHhcCCccCCCEEEEeCCcChhh----HHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CC
Confidence 6554100123565 999999999865 3446677999999999888999999999999999999999997 68
Q ss_pred Cccc-ccHHHHHHHHHhcCcEEEEeccccCCcc-cCCCCCCCCcEEEecccCCCC-CC-----ceeEEEEeccccccCC-
Q 012718 221 LASI-LPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFLVASSHKMCG-PT-----GIGFLFGKSDLLSAMP- 291 (458)
Q Consensus 221 tG~~-~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~~~~~~~~d~~~~s~~K~~g-p~-----g~G~l~~~~~~~~~l~- 291 (458)
+|.+ .++++|+++|+++|+++|+|++|+.+.. ..+...+++|++++|+||+|+ |. |+|++++++++++.+.
T Consensus 215 ~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~ 294 (474)
T 1wyu_B 215 LGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPV 294 (474)
T ss_dssp TSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCS
T ss_pred CcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCC
Confidence 9998 6899999999999999999999986554 233334579999999999665 53 5999999999888776
Q ss_pred Cccc-cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Q 012718 292 PFLG-GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYG 370 (458)
Q Consensus 292 ~~~~-g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 370 (458)
++.. ++.. ..... .......++..++.+...+.+....+..+...++++..++..++++++.+.|+++ ++++..
T Consensus 295 ~~~~~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 369 (474)
T 1wyu_B 295 PLVERGEEG---FYLDF-DRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPY 369 (474)
T ss_dssp CEEEECSSC---EEEEC-CCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSS
T ss_pred CeeeccCCe---eEecc-cCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecC
Confidence 3321 1110 00110 1111123444455666544544455544444457777899999999999999987 777633
Q ss_pred CCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 371 PKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+... ...+++.++ +.+..++.+.|.++ ||.+. +..+. ....+++||+++.+++.+|+++++++|++
T Consensus 370 ~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~-Gi~~~-~~~~~------~~~~~~lRis~~~~~t~e~id~~~~~L~~ 436 (474)
T 1wyu_B 370 DGPS-----MHEFVAQPPEGFRALDLAKGLLEL-GFHPP-TVYFP------LIVKEALMVEPTETEAKETLEAFAEAMGA 436 (474)
T ss_dssp CSSC-----CSCEEEBCSTTCCHHHHHHHHHHT-TCCCC-EESCS------TTSTTCEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCCc-----ceEEEEEcCCCCCHHHHHHHHHHC-Ccccc-ccccc------cccCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 2211 111344443 45678999999988 99853 32221 01257899999988899999999999998
Q ss_pred HHHh
Q 012718 450 TVSF 453 (458)
Q Consensus 450 ~~~~ 453 (458)
++++
T Consensus 437 ~~~~ 440 (474)
T 1wyu_B 437 LLKK 440 (474)
T ss_dssp HHTS
T ss_pred HHHh
Confidence 8754
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-31 Score=259.09 Aligned_cols=338 Identities=16% Similarity=0.136 Sum_probs=236.8
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHH--cC-CCCCCcEEEeCChhH
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAF--IN-ASDSGEIVFTKNATE 140 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~g-~~~~~~v~~t~g~t~ 140 (458)
++++++|+.+..+ ++++.+.+++.+.+....... +.+. +.......++|++++++ .| ++++ +|++|+|+++
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~~~~--y~~~~g~~~lr~~la~~l~~g~~~~~-~v~~~~G~~~ 106 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIARLSSPT--TCRG--YGPDFGLPALRQKLSEDFYRGFVDAK-EIFISDGAKV 106 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSS--CCCC--CCCTTCCHHHHHHHHHTTSTTSSCGG-GEEEESCHHH
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhcccccc--cccC--CCCCCCCHHHHHHHHHHHHcCCCCHH-HEEEccChHH
Confidence 3678999998776 678899999999887642211 1111 11123355899999999 46 5554 9999999999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCe-EEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~-~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
++..++..+ ++||+|+++.|+|++. ...++..|++ ++.++.++++.++.+ +++ + +++++|++++++|
T Consensus 107 al~~~~~~~-----~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~-l~~-~-~~~~~v~l~~p~n 174 (400)
T 3asa_A 107 DLFRLLSFF-----GPNQTVAIQDPSYPAY----LDIARLTGAKEIIALPCLQENAFFPE-FPE-D-THIDILCLCSPNN 174 (400)
T ss_dssp HHHHHHHHH-----CSSCEEEEEESCCHHH----HHHHHHTTCSEEEEEECCGGGTTCCC-CCT-T-CCCSEEEEESSCT
T ss_pred HHHHHHHHc-----CCCCEEEECCCCcHHH----HHHHHHcCCcceEecccchhcCcccC-hhh-c-cCccEEEEeCCCC
Confidence 999976543 6899999999999954 4556677998 999998754322221 222 1 5789999999999
Q ss_pred cCccccc---HHHHHHHHHhcCcEEEEecccc-C---CcccCCCCCC----CCcEEEecccCCCCCCc--eeEEEEeccc
Q 012718 220 MLASILP---IEEIVHWSHDVGAKVLVDACQS-V---PHMVVDVQGL----DADFLVASSHKMCGPTG--IGFLFGKSDL 286 (458)
Q Consensus 220 ~tG~~~~---l~~i~~l~~~~~~~vivD~a~~-~---g~~~~~~~~~----~~d~~~~s~~K~~gp~g--~G~l~~~~~~ 286 (458)
|||.++| +++|+++|+++|+++|+|++|+ + +..+..+..+ +.+++++|+||.+|++| +|++++++++
T Consensus 175 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~ 254 (400)
T 3asa_A 175 PTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQEL 254 (400)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTC
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhh
Confidence 9999998 5678899999999999999998 3 2222333222 24588999999998777 8999998877
Q ss_pred cccCC----CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 287 LSAMP----PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 287 ~~~l~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
.+... ..... ......++.+.....++..+++.. .+++++++++++++++.+.|++
T Consensus 255 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~ 314 (400)
T 3asa_A 255 TYADGHFVIQDWER-----------------FLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKALLA 314 (400)
T ss_dssp BCTTSCBHHHHHHH-----------------HHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHH-----------------HhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 42211 00000 000112456666666665555432 4678889999999999999988
Q ss_pred CCCEEEeCCCCCCcCccccEEEEE-eC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFN-VE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~-~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
. ++++..+. .+.++++. ++ +.+..++.+.|.+++||.+.+|..|... .++++||++ +.+++++
T Consensus 315 ~-g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~------~~~~iRis~--~~~~e~i 379 (400)
T 3asa_A 315 T-GFEVFGGE------HAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRS------GSGFVRFSS--LGKREDI 379 (400)
T ss_dssp T-TCEEEECS------SSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGG------GTTCEEEEC--CSCHHHH
T ss_pred C-CCeeeCCC------CceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCC------CCCEEEEEe--eCCHHHH
Confidence 7 78876543 15688998 76 3455678887765449999998766421 257899995 4799999
Q ss_pred HHHHHHHHHHHHhh
Q 012718 441 DEFIHALNETVSFF 454 (458)
Q Consensus 441 ~~l~~~l~~~~~~~ 454 (458)
++++++|++++++.
T Consensus 380 ~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 380 LAACERLQMAPALQ 393 (400)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988764
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=264.77 Aligned_cols=293 Identities=14% Similarity=0.156 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHc-----CCCCCCc---EEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-cCC
Q 012718 113 YELARKKVAAFI-----NASDSGE---IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-TGA 183 (458)
Q Consensus 113 ~~~~~~~la~~~-----g~~~~~~---v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-~g~ 183 (458)
..++++.+++++ +++++ + |++|+|+++|+.+++.++ +++||+|+++.++|++ +...++. .|+
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l----~~~gd~Vl~~~p~y~~----~~~~~~~~~g~ 160 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSID-NMSRPIVTNALTHGLSLVGDLF----VNQDDTILLPEHNWGN----YKLVFNTRNGA 160 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGG-GBCCCEEESHHHHHHHHHHHHH----CCTTCEEEEESSCCTH----HHHHHTTTTCC
T ss_pred CHHHHHHHHHHHhccCcccCCC-ccceEEEcCCchHHHHHHHHHH----hCCCCEEEEcCCcCcc----HHHHHHHhcCC
Confidence 457888999988 77765 7 999999999999999998 6899999999999995 4555666 799
Q ss_pred eEEEEeCCC-CCCCCHHHHHHhhcC---CceEEEEecccCcCccccc---HHHHHHHHHh-----cCcEEEEeccccCCc
Q 012718 184 NLKFLNLND-DESPDLDKLKEMLSR---KTKLVVIHHISNMLASILP---IEEIVHWSHD-----VGAKVLVDACQSVPH 251 (458)
Q Consensus 184 ~~~~v~~~~-~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~-----~~~~vivD~a~~~g~ 251 (458)
+++.++.++ ++.+|++++++.+++ +++++++++|+||||.++| +++|.++|++ +|+++|+|++|+...
T Consensus 161 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~ 240 (430)
T 2x5f_A 161 NLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLF 240 (430)
T ss_dssp EEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCB
T ss_pred eEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccccc
Confidence 999999875 457899999999977 7899999999999999999 8899999999 999999999998432
Q ss_pred c------cC--CCCC-CCC---cEEEecccCCCCCCc--eeEEEE---eccccccCCCccccCcceEeeecCCCCCCCCC
Q 012718 252 M------VV--DVQG-LDA---DFLVASSHKMCGPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPP 314 (458)
Q Consensus 252 ~------~~--~~~~-~~~---d~~~~s~~K~~gp~g--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 314 (458)
. ++ ++.. .+. +++++|+||.+|++| +|++++ ++++++.+.......
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~----------------- 303 (430)
T 2x5f_A 241 YEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGL----------------- 303 (430)
T ss_dssp CSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHH-----------------
T ss_pred CCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhh-----------------
Confidence 1 11 2222 345 788999999888667 799999 887766654322110
Q ss_pred CccCCCCCCHHHHHHHHHHHH----HHHHhCHHHHHHHHHHHHHHHHHHHh----cCCCEEEeCCCCCCcCccccEEEEE
Q 012718 315 SRFEAGTPAIGEAIGLGAAID----YLSTIGMQKIHAYEMELAKYLYENLL----SIPNIRIYGPKPSEHVQRAALCSFN 386 (458)
Q Consensus 315 ~~~~~gt~~~~~~~~l~~al~----~~~~~g~~~~~~~~~~l~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (458)
.+....+++.....++..+++ +... +++++++++++++++.+.|+ +. ++++..+. .+.++++.
T Consensus 304 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~------~g~~~~~~ 374 (430)
T 2x5f_A 304 IRSNISSGPLPTQSAVKHVLKNNKQFDKE--IEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFN------SGYFMAIK 374 (430)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHSCHHHHHH--HHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCC------BSSEEEEE
T ss_pred hhcccCCCChHHHHHHHHHHccChHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCC------ceEEEEeC
Confidence 001234567777777777777 3332 56688999999999999998 55 78876543 13468888
Q ss_pred eCCCChHHHHHHHhh-hcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 387 VENIHPTDIATLLDQ-QYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 387 ~~~~~~~~~~~~l~~-~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+++.+..++.+.|.+ + ||.+.+|. ++++||+++. .+++|+++++++|+++++++
T Consensus 375 ~~~~~~~~~~~~l~~~~-gi~v~~g~------------~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 375 VHDVDPEALRKHLIDKY-SIGVIALN------------ATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp ESSSCHHHHHHHHHHHH-CEECEECS------------SSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhC-CEEEecCC------------CCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 886678889999987 6 99998872 6789999995 58899999999999998765
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=254.16 Aligned_cols=296 Identities=19% Similarity=0.224 Sum_probs=212.0
Q ss_pred HHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCC
Q 012718 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE 194 (458)
Q Consensus 115 ~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~ 194 (458)
++++.+++++|.+ +.+++++|++|+..++.++ +++||+|+++.++|++....+..+++..|++++.++..
T Consensus 2 ~l~~~la~~~g~~---~~i~~~sG~~a~~~~~~~~----~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 71 (331)
T 1pff_A 2 ALEGKIAKLEHAE---ACAATASGMGAIAASVWTF----LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA--- 71 (331)
T ss_dssp HHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred hHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHh----cCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCC---
Confidence 5789999999986 4455555699999999987 67899999999999987766665566789999999863
Q ss_pred CCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh-cCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC
Q 012718 195 SPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD-VGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG 273 (458)
Q Consensus 195 ~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~-~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g 273 (458)
|++++++.+++++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.|....++ +.+.|++++|+||++|
T Consensus 72 --d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~ 148 (331)
T 1pff_A 72 --VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYIN 148 (331)
T ss_dssp --STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTS
T ss_pred --CHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-hcCCcEEEEECccccC
Confidence 8889999999899999999999999999999999999999 99999999999977653333 4679999999999666
Q ss_pred -CCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 012718 274 -PTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349 (458)
Q Consensus 274 -p~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 349 (458)
|.+ +|++++++ ++++.+.+...++ ..++.+.....++..+++.+... ++...+..
T Consensus 149 ~~~~r~~G~~~~~~~~~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 207 (331)
T 1pff_A 149 GHTDVVAGLVCSRADIIAKVKSQGIKDI--------------------TGAIISPHDAWLITRGTLTLDMR-VKRAAENA 207 (331)
T ss_dssp SSSSCCCEEEEECHHHHHHHHHTCCCCC--------------------CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhh--------------------cCCCCCHHHHHHHHcCcchHHHH-HHHHHHHH
Confidence 555 79999998 7776665443320 11345554444444455543321 23333333
Q ss_pred HHHHHHHHHH----------HhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccC---------
Q 012718 350 MELAKYLYEN----------LLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSG--------- 410 (458)
Q Consensus 350 ~~l~~~l~~~----------L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g--------- 410 (458)
..+.+++.+. |.+++++++..+.. ...+++++|.+. +..++.+.+.+. ||.++..
T Consensus 208 ~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~l~~~-gI~~~~~s~g~~~sl~ 281 (331)
T 1pff_A 208 QKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM---KMFGSMIAFDVD--GLEKAKKVLDNC-HVVSLAVSLGGPESLI 281 (331)
T ss_dssp HHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC---SSCCSEEEEECS--SHHHHHHHHHTC-SSSEECSSCCSSSCEE
T ss_pred HHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC---CCCceEEEEEEC--CHHHHHHHHHhC-CCceeccCCCCcceee
Confidence 3333333321 11112222221110 124678999887 567788888877 9977654
Q ss_pred CCCChhhH--------hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 411 HHCAQPLH--------RYLGV-NASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 411 ~~~~~~~~--------~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
.+|..+.+ ..+|. ++.+|+|++.+++++|++++++.|+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 282 QHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp ECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred ecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 24433322 23454 589999999999999999999998754
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-30 Score=257.08 Aligned_cols=358 Identities=15% Similarity=0.117 Sum_probs=251.7
Q ss_pred EEecCCCCCCCcHHHH-HHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC-CcEEEeCChhHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVL-KALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS-GEIVFTKNATEAINLVA 146 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~a~~~~~ 146 (458)
-||++-..+..++.+. +.+.+.+ +.+. ..+..+....+..+.+.+.+++++|.+.. ..++||+|+|+|+..++
T Consensus 97 ~f~~~~~~~~~~~~~~~e~l~~~~---~~~~--~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al 171 (511)
T 3vp6_A 97 RFFNQLSTGLDIIGLAGEWLTSTA---NTNM--FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSI 171 (511)
T ss_dssp TEESSSSCCCCHHHHHHHHHHHHH---CCCS--SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHH
T ss_pred CceEeecCCCcHHHHHHHHHHHHh---ccCC--CCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHH
Confidence 3777765555444443 4444433 2222 23344556677788899999999999842 38999999999999988
Q ss_pred HHcCCCC----------CCCCCEEEEcCCCCccchHHHHHHHHHcCC---eEEEEeCCCCCCCCHHHHHHhhcCC-----
Q 012718 147 YSWGLSN----------LKSGDEVILTVAEHHSAIVPWQLVAQKTGA---NLKFLNLNDDESPDLDKLKEMLSRK----- 208 (458)
Q Consensus 147 ~~l~~~~----------~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~---~~~~v~~~~~~~~d~~~l~~~l~~~----- 208 (458)
.++.... ..+++.|+++...|++. ...++..|+ +++.++.++++.+|+++|+++|+++
T Consensus 172 ~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~----~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~ 247 (511)
T 3vp6_A 172 MAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSI----KKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGY 247 (511)
T ss_dssp HHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHH----HHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhhhcCcccCCCeEEEECCCchHHH----HHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCC
Confidence 7763100 01567899999999964 556666787 8999999988999999999999764
Q ss_pred -ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC-----CCC-CCCcEEEecccCCC-CCCceeEE
Q 012718 209 -TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-----VQG-LDADFLVASSHKMC-GPTGIGFL 280 (458)
Q Consensus 209 -~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~-----~~~-~~~d~~~~s~~K~~-gp~g~G~l 280 (458)
+++|++++++|++|.+.|+++|+++|++||+++|+|++|+.+....+ +.. .++|++++++||++ +|.|+|++
T Consensus 248 ~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l 327 (511)
T 3vp6_A 248 VPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI 327 (511)
T ss_dssp EEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred CcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEE
Confidence 88999999999999999999999999999999999999998776221 211 24799999999954 58889999
Q ss_pred EEeccc-cccC----CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 281 FGKSDL-LSAM----PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 281 ~~~~~~-~~~l----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
+++++. ++.. ..++.+...... ..+......++.+.+ ...+++..+++.+...|++++.++..+++++
T Consensus 328 ~~~~~~~~~~~~~~~~~yl~~~~~~~~-----~~~~~~~~~~~~~r~--~~al~~~~al~~~g~~gl~~~~~~~~~~a~~ 400 (511)
T 3vp6_A 328 LVKEKGILQGCNQMHASYLFQQDKHYD-----VSYDTGDKAIQCGRH--VDIFKFWLMWKAKGTVGFENQINKCLELAEY 400 (511)
T ss_dssp EESSTTHHHHHHCCCCTTTCCSSCSSC-----GGGCCGGGSSCSSCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHhccCCccccCcccccc-----cccCccCCCCCCCCc--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 998753 3221 122211110000 000000111222222 2456777888888888899999999999999
Q ss_pred HHHHHhcCCCEEEeCC-CCCCcCccccEEEEEeCCCC-----------------hHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 356 LYENLLSIPNIRIYGP-KPSEHVQRAALCSFNVENIH-----------------PTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~-----------------~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
+.+.|++.|++++..+ .+. .++++|++.... ..++.+.|.++ |+.+.... +
T Consensus 401 l~~~L~~~pg~~l~~~~~p~-----~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~~~----~- 469 (511)
T 3vp6_A 401 LYAKIKNREEFEMVFNGEPE-----HTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQ----P- 469 (511)
T ss_dssp HHHHHHSCTTEEESSSSCCS-----SSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEEEE----E-
T ss_pred HHHHHhcCCCEEEEecCCCC-----eEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEE----E-
Confidence 9999999999999874 222 677888763211 23588888888 76443210 0
Q ss_pred HhhcCCCCeEEEee-CCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 418 HRYLGVNASARASL-HFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 418 ~~~~g~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
..+..+++|+++ ++.++.+||+++++.|+++-+.+.
T Consensus 470 --~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 470 --QGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLH 506 (511)
T ss_dssp --ETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred --eCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 001134799999 688999999999999998876553
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-31 Score=265.21 Aligned_cols=354 Identities=12% Similarity=0.099 Sum_probs=238.9
Q ss_pred CCeE-EecCCCCCCCcHHHHHHHHHHHHHhccC-------CCCCcchhhhHHHHHHHHHHHHHHHHc------CCCCCCc
Q 012718 66 KKLV-YLDNAATSQKPIAVLKALQNYYEAYNSN-------VHRGIHFLSAKATDEYELARKKVAAFI------NASDSGE 131 (458)
Q Consensus 66 ~~~i-~l~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~ 131 (458)
++++ +|.++.+.. ++.+.+++.+++.+...+ +....+..++......+++|+++|+++ +++++ +
T Consensus 31 ~~~i~~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~ 108 (444)
T 3if2_A 31 DQPVNMLGGGNPAK-IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE-N 108 (444)
T ss_dssp SSCCEECSCCCCCC-CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-G
T ss_pred chhhhccCCCCCCc-ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH-H
Confidence 5678 998887665 555666666666654333 210111222333344567888888887 45554 9
Q ss_pred EEEeCChhHHHHHHHHHcCCCCCCCCC--------------EEEEc-CCCCccchHHHH--HHHHHcCCeEEEEeCCC-C
Q 012718 132 IVFTKNATEAINLVAYSWGLSNLKSGD--------------EVILT-VAEHHSAIVPWQ--LVAQKTGANLKFLNLND-D 193 (458)
Q Consensus 132 v~~t~g~t~a~~~~~~~l~~~~~~~g~--------------~vl~~-~~~~~s~~~~~~--~~a~~~g~~~~~v~~~~-~ 193 (458)
|++|+|+|+|+++++.++ +++|| +|+++ .|+|++...... ......|..++.+++++ +
T Consensus 109 i~~t~G~t~al~~~~~~l----~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (444)
T 3if2_A 109 IALTNGSQNAFFYLFNLF----GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEE 184 (444)
T ss_dssp EEEESSHHHHHHHHHHHS----SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEE
T ss_pred EEEecCcHHHHHHHHHHH----hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEeccccccc
Confidence 999999999999999988 57777 78776 888886532110 01223477888888775 2
Q ss_pred C----CCCHHHHHHh---hcCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCC
Q 012718 194 E----SPDLDKLKEM---LSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQG 258 (458)
Q Consensus 194 ~----~~d~~~l~~~---l~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~ 258 (458)
| .+|++.|+++ +.+++++|++++++||||.++| +++|+++|+++|+++|+|++|+.+.. ......
T Consensus 185 g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~ 264 (444)
T 3if2_A 185 GFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNW 264 (444)
T ss_dssp EEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCC
T ss_pred CccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccC
Confidence 3 6899999998 6778999999999999999999 88899999999999999999984322 111223
Q ss_pred CCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 259 LDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 259 ~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
.+.+++++|+||+ +++| +|+++.++++++.+.......+ .+++.....++...++.
T Consensus 265 ~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~---------------------~~~~~~~~~a~~~~l~~ 322 (444)
T 3if2_A 265 DNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVN---------------------LAPTRFGAAIATPLVAN 322 (444)
T ss_dssp CTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHH---------------------SSCCCHHHHHHHHHHHT
T ss_pred CCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhcc---------------------CCCChHHHHHHHHHHHc
Confidence 4678999999996 5444 8999998887766653322111 12233333333333332
Q ss_pred HHHh-CHHH-HHHHHHHHHHHHHHHHhc-CC--CEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEecc
Q 012718 337 LSTI-GMQK-IHAYEMELAKYLYENLLS-IP--NIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRS 409 (458)
Q Consensus 337 ~~~~-g~~~-~~~~~~~l~~~l~~~L~~-~~--~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~ 409 (458)
.... ...+ ++++++++++.+.+.|.+ ++ ++.+..+. .+.++++.++ +.+..++.+.|.++ ||.+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~ 395 (444)
T 3if2_A 323 DRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE------GAIFLWLWFKDLPISTLDLYERLKAK-GTLIVP 395 (444)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC------BSSEEEEEETTCSSCHHHHHHHHHHT-TEECEE
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC------ccEEEEEEcCCCCCCHHHHHHHHHHC-CeEEec
Confidence 1100 0122 445555666666666543 33 56666543 2568888887 46788999999887 999999
Q ss_pred CCCCChhhHhh--cCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 410 GHHCAQPLHRY--LGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 410 g~~~~~~~~~~--~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
|..|....... -...+++|||++. ++++|++++++|.++++++..
T Consensus 396 g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 396 SEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp GGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHc
Confidence 98774321000 0013689999996 999999999999999987754
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=257.73 Aligned_cols=335 Identities=15% Similarity=0.175 Sum_probs=239.3
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCCCCcEEEeCChhH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVFTKNATE 140 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~~v~~t~g~t~ 140 (458)
+++++|..+... +.|+.+.+++.+.+....... +.+ ++......+++++++++++ +.+++ +|++|+|+++
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~~~--~y~~~~g~~~l~~~ia~~~~~~~~~~~~-~i~~t~G~~~ 130 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAHELSTIE--GYS--GYGAEQGAKPLRAAIAKTFYGGLGIGDD-DVFVSDGAKC 130 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTT--TCC--CCCCTTCCHHHHHHHHHHHHTTTTCCGG-GEEEESCHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcccccC--Ccc--CCCCCCCCHHHHHHHHHHHHccCCCCcc-eEEECCChHH
Confidence 578999988766 788999999999987642211 111 1111223457778888876 66654 9999999999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcC------------CeEEEEeCCCCC--CCCHHHHHHhhc
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG------------ANLKFLNLNDDE--SPDLDKLKEMLS 206 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g------------~~~~~v~~~~~~--~~d~~~l~~~l~ 206 (458)
++.++ ..+ +++||.|+++.|+|++... .++..| .+++.+++++++ ..|++ + .
T Consensus 131 al~~l-~~l----~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~--~ 196 (432)
T 3ei9_A 131 DISRL-QVM----FGSNVTIAVQDPSYPAYVD----SSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLS---T--V 196 (432)
T ss_dssp HHHHH-HHH----HCTTCCEEEEESCCTHHHH----HHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGG---G--C
T ss_pred HHHHH-HHH----cCCCCEEEEeCCCCHHHHH----HHHHcCCcccccccccccCceEEeccCcccCCcCChh---h--C
Confidence 99986 445 5799999999999996543 333445 367888887543 33433 2 3
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCCCCC----CCCcEEEecccCCCCCCc
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQG----LDADFLVASSHKMCGPTG 276 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~----~~~d~~~~s~~K~~gp~g 276 (458)
+++++|++++++||||.+++ +++|+++|+++|+++|+|++|+.... +..+.. .+.++++.|+||.+|+.|
T Consensus 197 ~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 276 (432)
T 3ei9_A 197 GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG 276 (432)
T ss_dssp CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT
T ss_pred CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc
Confidence 57899999999999999998 56777779999999999999993321 222211 246799999999988777
Q ss_pred --eeEEEEecccc--------ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 277 --IGFLFGKSDLL--------SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 277 --~G~l~~~~~~~--------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
+|+++++++++ +.+.... ....++++...+.++.+++.......++++.
T Consensus 277 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 335 (432)
T 3ei9_A 277 VRLGWTVIPKKLLYSDGFPVAKDFNRII---------------------CTCFNGASNISQAGALACLTPEGLEAMHKVI 335 (432)
T ss_dssp TCCEEEECCTTCBCTTSCBHHHHHHHHH---------------------HHSCCCSCHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred cceEEEEEChHHhhcchHHHHHHHHHHh---------------------ccccCCCCHHHHHHHHHHHhcccHHHHHHHH
Confidence 89999998873 2221111 0112345555555555555322112367888
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCe
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNAS 426 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~ 426 (458)
++++++++++.+.|+++ ++++..+.. ++++++.+++.+..++.+.+.+++||.+++|..|... .+++
T Consensus 336 ~~~~~~~~~l~~~L~~~-g~~~~~~~~------~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~------~~~~ 402 (432)
T 3ei9_A 336 GFYKENTNIIIDTFTSL-GYDVYGGKN------APYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPG------GEGF 402 (432)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEECSS------SSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGG------GTTE
T ss_pred HHHHHHHHHHHHHHHHC-CceecCCCc------ceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCC------CCCE
Confidence 99999999999999988 777765431 6789999987777888888766559999998865432 1689
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 427 ARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 427 lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+||++. .+++++++++++|++-.+..+
T Consensus 403 iRis~~--~~~e~l~~~l~rl~~~~~~~~ 429 (432)
T 3ei9_A 403 VRVSAF--GHRENILEACRRFKQLYKHHH 429 (432)
T ss_dssp EEEECC--SCHHHHHHHHHHHHHHHTTSC
T ss_pred EEEEec--CCHHHHHHHHHHHHHHhhhcc
Confidence 999985 699999999999998776554
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.4e-31 Score=249.81 Aligned_cols=307 Identities=15% Similarity=0.158 Sum_probs=233.0
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC---CCCCCcEEEeCChhHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN---ASDSGEIVFTKNATEA 141 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g---~~~~~~v~~t~g~t~a 141 (458)
++++||+.+..+ +.|+.+.+++.+.+.....+ .+. . ...+++|+.++++++ ++++ +|++|+|++++
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~--~-~~~~~lr~~la~~~~~~~~~~~-~v~~~~G~~~a 88 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDALR------IYY--D-SPDEELIEKILSYLDTDFLSKN-NVSVGNGADEI 88 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHHHTCCGGGGG------SCC--C-SSCHHHHHHHHHHHTCSSCCGG-GEEEESSHHHH
T ss_pred CcceECCCCCCCCCCCHHHHHHHHHHhhhhhhh------cCC--C-CchHHHHHHHHHHcCCCCCCHH-HEEEcCChHHH
Confidence 357999999875 57899999988876321110 000 0 125689999999999 6654 99999999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcC
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t 221 (458)
+.+++.++ ||+|+++ |+|++ +...++..|++++.++.++++.+|++++ +++++|++++|+|||
T Consensus 89 l~~~~~~~-------gd~Vl~~-p~y~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~npt 151 (335)
T 1uu1_A 89 IYVMMLMF-------DRSVFFP-PTYSC----YRIFAKAVGAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPT 151 (335)
T ss_dssp HHHHHHHS-------SEEEECS-SSCHH----HHHHHHHHTCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTT
T ss_pred HHHHHHHh-------CCcEEEC-CCcHH----HHHHHHHcCCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCC
Confidence 99999865 7899999 99995 4555667799999999877767787776 578999999999999
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcc-c-CC-CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcccc
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM-V-VD-VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGG 296 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~-~~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g 296 (458)
|.++|.+++.++++..| ++|+|++|+.... + ++ +...+.+++++|+||.+|++| +|++++++++++.+.....
T Consensus 152 G~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~- 229 (335)
T 1uu1_A 152 GHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL- 229 (335)
T ss_dssp CCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSC-
T ss_pred CCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcC-
Confidence 99999999999999889 9999999983211 1 22 234567899999999998777 8999998887665543211
Q ss_pred CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc
Q 012718 297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH 376 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~ 376 (458)
..+++.....++..+++... .+++..++++++++++.+.|+++ ++++. +.
T Consensus 230 ----------------------~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~---- 279 (335)
T 1uu1_A 230 ----------------------PFNVSYVSQMFAKVALDHRE--IFEERTKFIVEERERMKSALREM-GYRIT-DS---- 279 (335)
T ss_dssp ----------------------TTCSCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CC----
T ss_pred ----------------------CCCcCHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CC----
Confidence 12566666666666666521 36778888999999999999877 66543 22
Q ss_pred CccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 377 VQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 377 ~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
.++++++.+++.+..++.+.|.++ ||.++++ ++++|+|++ +.+|+++++++|+++
T Consensus 280 --~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~-------------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 280 --RGNFVFVFMEKEEKERLLEHLRTK-NVAVRSF-------------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp --CSSEEEEECCTHHHHHHHHHHHHH-TEEEEEE-------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred --CCeEEEEECCCCCHHHHHHHHHHC-CEEEEEC-------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 166888988754466788899888 9999862 568999987 468899999988753
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=259.08 Aligned_cols=346 Identities=16% Similarity=0.143 Sum_probs=249.5
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhh-hHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLS-AKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
+++.++.++.|+.+.+++.+.+.... .++.. .+..+ ....+..+.+|+.+++++|.++ ..+++++|++|+.+++
T Consensus 26 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~r~~la~~~g~~~--~~i~~~sGt~a~~~a~ 102 (405)
T 2vi8_A 26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGR-RYYGGCEYVDIVEELARERAKQLFGAEH--ANVQPHSGAQANMAVY 102 (405)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHH
T ss_pred eeeccCcccCCHHHHHHHHHHhhcccccCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCc--eEEEecCcHHHHHHHH
Confidence 34555556679999999988764211 11111 11111 2233444558899999999873 4455556699999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHH--HHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcC-CceEEEEecccCcCc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQ--LVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNMLA 222 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~--~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG 222 (458)
.++ +++||+|+++.++|++....+. ... ..+.+++.++++ .++.+|++++++.+++ ++++|+++. +| .|
T Consensus 103 ~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~-~~-~~ 175 (405)
T 2vi8_A 103 FTV----LEHGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAA-AA-YP 175 (405)
T ss_dssp HHH----CCTTCEEEEECGGGTCCTTTTCTTSHH-HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECC-SS-CC
T ss_pred HHh----cCCCCEEEEecccccchhcccchhhhc-cceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEeC-CC-CC
Confidence 988 6899999999999987642111 111 124578888875 4677899999999986 788888743 33 46
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCC---CCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCc
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL---DADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGE 298 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~ 298 (458)
...++++|.++|+++|+++|+|++|+.|..+.+.... .+|++++|+||+++ |.| |++++++++++.+.+...
T Consensus 176 ~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~--- 251 (405)
T 2vi8_A 176 RIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIF--- 251 (405)
T ss_dssp SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHT---
T ss_pred ccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhc---
Confidence 7778999999999999999999999965443222222 58999999999775 888 999999877665543221
Q ss_pred ceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCc
Q 012718 299 MISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQ 378 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~ 378 (458)
.+..++++..+++++.++++.+...+++++.++++++++++.+.|+++ ++++..+..
T Consensus 252 -----------------~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----- 308 (405)
T 2vi8_A 252 -----------------PGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGT----- 308 (405)
T ss_dssp -----------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC-----
T ss_pred -----------------ccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCC-----
Confidence 122467788888888888888765568899999999999999999988 888876432
Q ss_pred cccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC----CCCHHHHHHHHHHHHHHHH
Q 012718 379 RAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF----YNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 379 ~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~----~~t~~di~~l~~~l~~~~~ 452 (458)
.+.++++.++ +.+..++.+.|.++ ||.+++|..+.... ....++++|++++. ..+++|+++++++|+++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~--~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~ 385 (405)
T 2vi8_A 309 DNHLLLVDLRPQQLTGKTAEKVLDEV-GITVNKNTIPYDPE--SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp SSSEEEEECGGGTCCHHHHHHHHHHH-TEECEEECCTTCSS--CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEccCCCCCHHHHHHHHHHc-CceeccCcCccccC--CCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHh
Confidence 2668888886 34678899999888 99999876321000 00125689999986 4679999999999999987
Q ss_pred hhh
Q 012718 453 FFN 455 (458)
Q Consensus 453 ~~~ 455 (458)
+++
T Consensus 386 ~~~ 388 (405)
T 2vi8_A 386 NVG 388 (405)
T ss_dssp CTT
T ss_pred ccc
Confidence 654
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=255.65 Aligned_cols=377 Identities=11% Similarity=0.037 Sum_probs=258.7
Q ss_pred CCCccchhhhhcC-CCCcccccccCCCCeEEecCCCCCCCcHHHH-HHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHH
Q 012718 41 STDSVSLGHITRP-DFPILHQEVYGSKKLVYLDNAATSQKPIAVL-KALQNYYEAYNSNVHRGIHFLSAKATDEYELARK 118 (458)
Q Consensus 41 ~~~~~~~~~~~r~-~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (458)
..+..++.+.+++ ..|....+.+ --|+++-..+..++.+. +.+...+ +.+. ..+..++...+..+++.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~l~~~~---n~~~--~~~~~~p~~~~lE~~v~~ 120 (475)
T 3k40_A 50 PEKWQDVMQDIERVIMPGVTHWHS----PKFHAYFPTANSYPAIVADMLSGAI---ACIG--FTWIASPACTELEVVMMD 120 (475)
T ss_dssp CCCHHHHHHHHHHHTGGGCCCTTC----TTBCCSSCCCCCHHHHHHHHHHHHH---CCCS--SSCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCCC----cCceeeCCCCCcHHHHHHHHHHHHh---Cccc--cCccCCcHHHHHHHHHHH
Confidence 4444555555554 3444433322 23566654454444443 3333332 2232 233445566777778999
Q ss_pred HHHHHcCCCCC--------CcEEEeCChhHHHHHHHHHcCCCC---------------CCCCCEEEEcCCCCccchHHHH
Q 012718 119 KVAAFINASDS--------GEIVFTKNATEAINLVAYSWGLSN---------------LKSGDEVILTVAEHHSAIVPWQ 175 (458)
Q Consensus 119 ~la~~~g~~~~--------~~v~~t~g~t~a~~~~~~~l~~~~---------------~~~g~~vl~~~~~~~s~~~~~~ 175 (458)
.+++++|.+.. ...+||+|||+|+..++.+.+... ..+++.|+++..+|++. .
T Consensus 121 ~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~----~ 196 (475)
T 3k40_A 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSV----E 196 (475)
T ss_dssp HHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHH----H
T ss_pred HHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHH----H
Confidence 99999999853 168999999999988887752110 01346899999999965 4
Q ss_pred HHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC------ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccC
Q 012718 176 LVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249 (458)
Q Consensus 176 ~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~ 249 (458)
+.++..|++++.||+++++ +|+++|+++|+++ +.+|++++++|++|.+.|+++|+++|++||+++|+|++|+.
T Consensus 197 ~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~ 275 (475)
T 3k40_A 197 RAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAG 275 (475)
T ss_dssp HHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGG
T ss_pred HHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHH
Confidence 5556679999999999889 9999999999764 67889999999999999999999999999999999999997
Q ss_pred CcccCC-----CCCC-CCcEEEecccC-CCCCCceeEEEEecccc--ccCC---CccccCcceEeeecCCCCCCCCCCcc
Q 012718 250 PHMVVD-----VQGL-DADFLVASSHK-MCGPTGIGFLFGKSDLL--SAMP---PFLGGGEMISDVFLDHSTFADPPSRF 317 (458)
Q Consensus 250 g~~~~~-----~~~~-~~d~~~~s~~K-~~gp~g~G~l~~~~~~~--~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (458)
+....+ +... .+|++++|+|| +++|.|+|+++++++.. +.+. +++.+... . ..+......+
T Consensus 276 ~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~--~-----~~~~~~~~~~ 348 (475)
T 3k40_A 276 SAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQ--G-----SAPDYRHWQI 348 (475)
T ss_dssp GGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC----------------------------------
T ss_pred HHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcC--C-----CCCCcccccc
Confidence 654211 1111 36999999999 66799999999987532 2221 11111000 0 0000011122
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC--ChHHH
Q 012718 318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI--HPTDI 395 (458)
Q Consensus 318 ~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~ 395 (458)
+.+.+ ...+.+.++++.+...|++++.++..++++++.+.|++++++++..++. .++++|++++. ...++
T Consensus 349 ~~sr~--~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~------~~iv~f~~~~~~~~~~~l 420 (475)
T 3k40_A 349 PLGRR--FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEIN------MGLVCFRLKGSNERNEAL 420 (475)
T ss_dssp CCCGG--GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCB------TTEEEEEESSCHHHHHHH
T ss_pred cCCCc--ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc------eEEEEEEeCCchHHHHHH
Confidence 22222 3456778888888888899999999999999999999999999986542 67999998753 25678
Q ss_pred HHHHhhhcCe-EeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 396 ATLLDQQYGV-ATRSGHHCAQPLHRYLGVNASARASLH-FYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 396 ~~~l~~~~gi-~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.|.++ |+ .+.++. +....++|+++. +.++++||+++++.|+++.+++.+
T Consensus 421 ~~~L~~~-g~~~~~~~~---------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 421 LKRINGR-GHIHLVPAK---------IKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHH-TSCBCEEEE---------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC-CcEEEEeeE---------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 8889888 65 333322 122568999976 556999999999999999887643
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=250.47 Aligned_cols=328 Identities=16% Similarity=0.181 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEE
Q 012718 83 VLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVIL 162 (458)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~ 162 (458)
+.+++.+.+.... + ...+..+++++.++++++.+ ++++++|||+|+..++.++ .+++||+|++
T Consensus 21 ~~~~~~~~~~~~~-------~----~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~~~~~---~~~~gd~v~~ 83 (374)
T 3uwc_A 21 YLNDLREFIKTAD-------F----TLGAELEKFEKRFAALHNAP---HAIGVGTGTDALAMSFKML---NIGAGDEVIT 83 (374)
T ss_dssp HHHHHHHHHHHTC-------C----SSCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHT---TCCTTCEEEE
T ss_pred HHHHHHHHHHcCC-------c----ccChhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHc---CCCCCCEEEE
Confidence 7788877765421 1 11345678999999999987 7899999999999999987 3689999999
Q ss_pred cCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEE
Q 012718 163 TVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL 242 (458)
Q Consensus 163 ~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vi 242 (458)
+.++|++. ...++..|++++.++.++++.+|++++++.+++++++|+ ++||||.+.|+++|.++|+++|+++|
T Consensus 84 ~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li 156 (374)
T 3uwc_A 84 CANTFIAS----VGAIVQAGATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIV 156 (374)
T ss_dssp ESSSCHHH----HHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEE
T ss_pred CCCccHHH----HHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEE
Confidence 99999965 444567799999999987788999999999998888887 78899999999999999999999999
Q ss_pred EeccccCCcccCCCCCCC--CcEEEeccc--CCCCCCc-eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCc
Q 012718 243 VDACQSVPHMVVDVQGLD--ADFLVASSH--KMCGPTG-IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316 (458)
Q Consensus 243 vD~a~~~g~~~~~~~~~~--~d~~~~s~~--K~~gp~g-~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (458)
+|++|+.|.. ++....+ .|+++.|+| |++++.| +|+++.++ ++.+.+.....++... .+.
T Consensus 157 ~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~----- 222 (374)
T 3uwc_A 157 EDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN--------RDV----- 222 (374)
T ss_dssp EECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE--------TTE-----
T ss_pred EeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc--------cCc-----
Confidence 9999998765 3333333 799999987 9888744 78888766 3444444332222110 000
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC-EEEeCCCCCCcCccccEEEEEeCCCChHHH
Q 012718 317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN-IRIYGPKPSEHVQRAALCSFNVENIHPTDI 395 (458)
Q Consensus 317 ~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 395 (458)
....+.+. ....+.+++......+++++.++.+++.+++.+.|.++++ +++...... ....++.+.+...+..++
T Consensus 223 ~~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l 298 (374)
T 3uwc_A 223 CVEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREG---VYHVFHIYVLRVKYRDQL 298 (374)
T ss_dssp ESSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTT---EECCCSSEEEEETTHHHH
T ss_pred cccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCC---CceeeEEEEEEcCCHHHH
Confidence 00001111 1223444444444456788899999999999999999877 876433321 112223333333367889
Q ss_pred HHHHhhhcCeEeccCC----CCChhhHhhcCC------------CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 396 ATLLDQQYGVATRSGH----HCAQPLHRYLGV------------NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 396 ~~~l~~~~gi~~~~g~----~~~~~~~~~~g~------------~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.|.++ ||.++++. ++.+ .+..++. .+.+|++++.++|++||+++++.|++++++.
T Consensus 299 ~~~L~~~-gi~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 299 FQYLKDN-GIEVKIHYPIAMHLQP-AAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp HHHHHHT-TBCCBCSCSSCGGGSG-GGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHC-CCccccCCCCccccCh-hhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999988 99998875 2211 1111111 2689999999999999999999999998754
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=251.71 Aligned_cols=301 Identities=14% Similarity=0.133 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHcCCCC--------CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcC
Q 012718 111 DEYELARKKVAAFINASD--------SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG 182 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~--------~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g 182 (458)
+..+.+.+.+++..|.+. .++|++|+|+++|+.+++.++ +++||+|++++|+|++ +...++..|
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g 153 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI----INPGDNVLLDEPAYSG----TLQSLHPLG 153 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH----CCTTCEEEEESSCCHH----HHHHHGGGT
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh----CCCCCEEEEeCCCcHH----HHHHHHHcC
Confidence 334444455555568764 248999999999999999998 6899999999999994 456667789
Q ss_pred CeEEEEeCCCCCCCCHHHHHHhhc------------CCceEEEE-ecccCcCcccccHH---HHHHHHHhcCcEEEEecc
Q 012718 183 ANLKFLNLNDDESPDLDKLKEMLS------------RKTKLVVI-HHISNMLASILPIE---EIVHWSHDVGAKVLVDAC 246 (458)
Q Consensus 183 ~~~~~v~~~~~~~~d~~~l~~~l~------------~~~~~v~~-~~~~n~tG~~~~l~---~i~~l~~~~~~~vivD~a 246 (458)
++++.++.++++ +|+++|++.++ +++++|++ ++++||||.++|.+ +|+++|+++|++||+|++
T Consensus 154 ~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~ 232 (425)
T 2r2n_A 154 CNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDP 232 (425)
T ss_dssp CEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred CEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 999999987654 79999999887 35788865 79999999999955 999999999999999999
Q ss_pred ccC----CcccCC---CCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCcc
Q 012718 247 QSV----PHMVVD---VQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF 317 (458)
Q Consensus 247 ~~~----g~~~~~---~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (458)
|+. |..+.+ +...+.+++++|+||.++ +| +||+++++++++.+..... .
T Consensus 233 ~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~---------------------~ 290 (425)
T 2r2n_A 233 YYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQ---------------------V 290 (425)
T ss_dssp TGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHH---------------------T
T ss_pred cccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHH---------------------H
Confidence 982 221122 233346799999999888 66 8999999987766553321 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHhc-CCCE-EEeCCCCCCcCccccEEEEEeCC-C
Q 012718 318 EAGTPAIGEAIGLGAAIDYLST----IGMQKIHAYEMELAKYLYENLLS-IPNI-RIYGPKPSEHVQRAALCSFNVEN-I 390 (458)
Q Consensus 318 ~~gt~~~~~~~~l~~al~~~~~----~g~~~~~~~~~~l~~~l~~~L~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~ 390 (458)
...+++.....++..+++.+.. ..+++++++++++++++.+.|++ ++++ .+..+. .+.++++.+++ .
T Consensus 291 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~------~g~~~~~~~~~~~ 364 (425)
T 2r2n_A 291 STLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPA------AGMFLWIKVKGIN 364 (425)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCS------BSSEEEEEETTCS
T ss_pred hcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCC------ceEEEEEEeCCCC
Confidence 1235666666666677765321 12567788888999999999987 5665 444332 25689999975 3
Q ss_pred ChHH-HHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 391 HPTD-IATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 391 ~~~~-~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+..+ +.+.+.++ ||.+.+|..|.... -...+++||+++. .+++++++++++|.+++++
T Consensus 365 ~~~~~~~~~l~~~-gv~v~pg~~f~~~~---~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 365 DVKELIEEKAVKM-GVLMLPGNAFYVDS---SAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp CCHHHHHTHHHHT-TEECEEGGGGSSST---TSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC-CcEEechhhhcCCC---CCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 4455 57778877 99999987553221 0125799999984 5999999999999999875
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-30 Score=248.02 Aligned_cols=344 Identities=16% Similarity=0.174 Sum_probs=240.5
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG 157 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g 157 (458)
..|+.+.+++.+.+..... . .....+++++.+++++|.+ ++++++|+|+|+.+++.++. +++|
T Consensus 17 ~~~~~~~~a~~~~~~~~~~-------~----~~~~~~~l~~~la~~~~~~---~~~~~~~gt~al~~~~~~~~---~~~g 79 (393)
T 1mdo_A 17 AMGAEELAAVKTVLDSGWI-------T----TGPKNQELEAAFCRLTGNQ---YAVAVSSATAGMHIALMALG---IGEG 79 (393)
T ss_dssp CCCHHHHHHHHHHHHHTCC-------S----SSHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHTT---CCTT
T ss_pred CCCHHHHHHHHHHHhcCCc-------C----CChHHHHHHHHHHHHhCCC---cEEEecChHHHHHHHHHHcC---CCCC
Confidence 3567888888888765311 1 1245678999999999985 89999999999999999873 6789
Q ss_pred CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh
Q 012718 158 DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD 236 (458)
Q Consensus 158 ~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~ 236 (458)
|+|+++.++|++.. ..++..|++++.++++++ +.+|++++++.+++++++|++++ ++|.+.++++|.++|++
T Consensus 80 d~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~~~~i~~l~~~ 152 (393)
T 1mdo_A 80 DEVITPSMTWVSTL----NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGER 152 (393)
T ss_dssp CEEEEESSSCHHHH----HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHH
T ss_pred CEEEeCCCccHhHH----HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCCHHHHHHHHHH
Confidence 99999999999653 445667999999998865 67899999999988899888764 69999999999999999
Q ss_pred cCcEEEEeccccCCcccCCCCCCC-CcEEEeccc--CCCCCCceeEEEEe-ccccccCCCccccCcceEeeecCCCCCCC
Q 012718 237 VGAKVLVDACQSVPHMVVDVQGLD-ADFLVASSH--KMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFAD 312 (458)
Q Consensus 237 ~~~~vivD~a~~~g~~~~~~~~~~-~d~~~~s~~--K~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 312 (458)
+|+++|+|++|+.|... +...++ .|++++|+| |++++..+|+++.+ +++++.+.+....+.... .. .. .+..
T Consensus 153 ~~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~-~~~~ 228 (393)
T 1mdo_A 153 YGIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVD-AW-DR-QSGG 228 (393)
T ss_dssp HTCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------
T ss_pred cCCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCccc-ch-hh-hccc
Confidence 99999999999987543 222334 899999999 87765458899886 566665554332221110 00 00 0011
Q ss_pred CCCccC---CCC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC
Q 012718 313 PPSRFE---AGT-PAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE 388 (458)
Q Consensus 313 ~~~~~~---~gt-~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 388 (458)
.+..++ .|+ ..... .....++..+. +++++.++.+++++++.+.|.+++ +++...+.......+.++++.++
T Consensus 229 ~~~~~~~~~~g~~~~~~~-~~~a~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 304 (393)
T 1mdo_A 229 RAPQAEVLAPGYKYNLPD-LNAAIALAQLQ--KLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVD 304 (393)
T ss_dssp ---CCEESSCCCBCCCCH-HHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECC
T ss_pred ccccccccccCccCCCCH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEec
Confidence 111221 222 11111 11212223332 367788888899999999999885 77754321000112347889887
Q ss_pred ----CCChHHHHHHHhhhcCeEeccCCCCCh--hhHhh------cC-----CCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 389 ----NIHPTDIATLLDQQYGVATRSGHHCAQ--PLHRY------LG-----VNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 389 ----~~~~~~~~~~l~~~~gi~~~~g~~~~~--~~~~~------~g-----~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+.+..++.+.|.++ ||.++++..|.. +.+.. +. ....+|++++.++|++|++++++.|++++
T Consensus 305 ~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 383 (393)
T 1mdo_A 305 EARCGITRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 383 (393)
T ss_dssp HHHHSSCHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHhC-CCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 56788999999988 999998876621 11110 00 04589999999999999999999999988
Q ss_pred Hhh
Q 012718 452 SFF 454 (458)
Q Consensus 452 ~~~ 454 (458)
+..
T Consensus 384 ~~~ 386 (393)
T 1mdo_A 384 GQG 386 (393)
T ss_dssp C--
T ss_pred hcC
Confidence 754
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=252.68 Aligned_cols=301 Identities=18% Similarity=0.197 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 109 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
.....+++++.+++++|.+ +.+++++|++|++.++.++ +++||+|+++.+.|++....+...++..|++++.+
T Consensus 112 ~~~~~~~l~~~lA~l~g~~---~~v~~~sG~~Ai~~al~~l----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 184 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEGAE---STLLMASGMCASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETILPKMGITATVI 184 (445)
T ss_dssp CCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred CChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH----hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 4566778999999999986 4455556669999999987 67899999999999987655554566789999999
Q ss_pred eCCCCCCCCHHHHHHhhcCCc-eEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEec
Q 012718 189 NLNDDESPDLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAS 267 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s 267 (458)
+.+ |++++++++++++ ++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+... ...++++|+++.|
T Consensus 185 ~~~-----d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-~~~~~g~Div~~S 258 (445)
T 1qgn_A 185 DPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGADLVLHS 258 (445)
T ss_dssp CSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTCSEEEEC
T ss_pred CCC-----CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CccccCCEEEEEC
Confidence 875 8999999999888 99999999999999999999999999999999999999977542 3345689999999
Q ss_pred ccCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 268 SHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 268 ~~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
+||++|+.| +|+++.++++++.+...... ..++++....+.+..+++.+ ..
T Consensus 259 ~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~---------------------~g~~~~~~~a~~~~~~l~~l-----~~ 312 (445)
T 1qgn_A 259 ATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI---------------------LGGALNPNAAYLIIRGMKTL-----HL 312 (445)
T ss_dssp TTTTTTCSSSCCCEEEEECHHHHHHHHHHHHH---------------------HCCCCCHHHHHHHHHHGGGH-----HH
T ss_pred CcccccccccceEEEEEECHHHHHHHHHHHHH---------------------hCCCCCHHHHHHHHHhHHHH-----HH
Confidence 999999887 99999998876655422110 01234443333333333332 33
Q ss_pred HHHHHHHHHHHHHHHHhcCCCE-EEeCCCCCC-c---------CccccEEEEEeCCC--ChHHHHHHHhhhcCeEeccCC
Q 012718 345 IHAYEMELAKYLYENLLSIPNI-RIYGPKPSE-H---------VQRAALCSFNVENI--HPTDIATLLDQQYGVATRSGH 411 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~-~~~~~~~~~-~---------~~~~~~v~~~~~~~--~~~~~~~~l~~~~gi~~~~g~ 411 (458)
..++..++++++.+.|++.|++ ++..+.-.. + ...+++++|.+++. ....+.+.+... ++.++.|.
T Consensus 313 r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~-~i~~s~G~ 391 (445)
T 1qgn_A 313 RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIP-YIAPSFGG 391 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSS-EECSCCCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCc-eEeccCCC
Confidence 3344556688899999988888 555542110 0 12477999999862 123344444323 77888888
Q ss_pred CCChh--------------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 412 HCAQP--------------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 412 ~~~~~--------------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.|+.. ....+|. ++.||+|++. ||++.+++.|+++++.
T Consensus 392 ~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~----Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 392 CESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALDS 444 (445)
T ss_dssp SSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred CceeeecccccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence 87631 1224555 4799999994 7899999999998864
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=258.49 Aligned_cols=339 Identities=18% Similarity=0.140 Sum_probs=233.3
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
.+.+.++.+.....+.+.+++..+... . +.+.++....+..+++++.+++++|.+ +++++++|++|+..++
T Consensus 26 ~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~a~~~~l 96 (398)
T 2rfv_A 26 ALSTPIFQTSTFVFDSAEQGAARFALE-----E-SGYIYTRLGNPTTDALEKKLAVLERGE---AGLATASGISAITTTL 96 (398)
T ss_dssp CSSCCCCCCSBCCCSSHHHHHHHC-----------CCSBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHH
T ss_pred CcCCCCcCCCccccCCHHHHHHhhcCC-----C-CCCceeCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHH
Confidence 345667777776666666666521111 0 111222223566788999999999986 5667777889999999
Q ss_pred HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccccc
Q 012718 147 YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226 (458)
Q Consensus 147 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~ 226 (458)
.++ +++||+|+++.++|++....+..+++..|.+++.++.+ |++++++.+++++++|++++++||||.+.|
T Consensus 97 ~~~----~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~ 167 (398)
T 2rfv_A 97 LTL----CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPETKVVYIETPANPTLSLVD 167 (398)
T ss_dssp HHH----CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSBTTTTBCCC
T ss_pred HHH----hCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccC
Confidence 988 67999999999999988766666667789999999875 899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCc--eeEEEEeccccc-cCCCccccCcceEe
Q 012718 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTG--IGFLFGKSDLLS-AMPPFLGGGEMISD 302 (458)
Q Consensus 227 l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g--~G~l~~~~~~~~-~l~~~~~g~~~~~~ 302 (458)
+++|.++|+++|+++|+|++|+.+.....+ ..++|+++.|+||+++ |.+ +|+++++++.++ .+.+...++
T Consensus 168 l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~----- 241 (398)
T 2rfv_A 168 IETVAGIAHQQGALLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI----- 241 (398)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHT-----
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhC-----
Confidence 999999999999999999999977653222 4579999999999775 555 499999988765 444332211
Q ss_pred eecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe-CCCCC-C-----
Q 012718 303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY-GPKPS-E----- 375 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~-~----- 375 (458)
..++.+.....++..+++.+ ....++..++.+.+.+.|.+.+.++-. .+.-. .
T Consensus 242 ---------------~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~ 301 (398)
T 2rfv_A 242 ---------------TGGCMSPFNAWLTLRGVKTL-----GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYEL 301 (398)
T ss_dssp ---------------TCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHH
T ss_pred ---------------CCCCCCHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHH
Confidence 12355655555555555433 223344455666677777665433211 11000 0
Q ss_pred ----cCccccEEEEEeCCC--ChHHHHHHHhhhcCeEeccCCC------CChhhHh--------hcCC-CCeEEEeeCCC
Q 012718 376 ----HVQRAALCSFNVENI--HPTDIATLLDQQYGVATRSGHH------CAQPLHR--------YLGV-NASARASLHFY 434 (458)
Q Consensus 376 ----~~~~~~~v~~~~~~~--~~~~~~~~l~~~~gi~~~~g~~------~~~~~~~--------~~g~-~~~lRis~~~~ 434 (458)
....+++++|.+++. ....+.+.+... |+.+++|.. |....+. ..|. ++.+|+|++..
T Consensus 302 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~-~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~ 380 (398)
T 2rfv_A 302 GQRQMSLPGGIISFEIAGGLEAGRRMINSVELC-LLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLE 380 (398)
T ss_dssp HHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSS-EECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSS
T ss_pred HHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcc-eeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCC
Confidence 012477999998752 122233333333 777777754 2221111 2333 68999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 012718 435 NTKEDVDEFIHALNET 450 (458)
Q Consensus 435 ~t~~di~~l~~~l~~~ 450 (458)
+++++|++++++|+++
T Consensus 381 ~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 381 DPEDIINDLEHAIRKA 396 (398)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988764
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=256.79 Aligned_cols=326 Identities=15% Similarity=0.132 Sum_probs=230.9
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCChhHHHHHHHHHcCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
.|..++++..+.+...... ....+ .......++|+++++++ | ++++ +|++|+|+++++.+++.++
T Consensus 107 ~p~~~~~~a~~~l~~~~~~-~~~~Y----~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l--- 177 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGR-ATGAY----SHSQGIHGLRDAIASGIASRDGFPANAD-DIFLTDGASPGVHLMMQLL--- 177 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTS-CSSSC----CCTTCCHHHHHHHHHHHHHHHSSCCCGG-GEEEESSSHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHcCCCC-cCCCc----CCCcChHHHHHHHHHHHHhhcCCCCCcc-cEEEcCCHHHHHHHHHHHH---
Confidence 4555666665555442110 01111 12223345666666665 3 4444 9999999999999999998
Q ss_pred CC-CCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcC------CceEEEEecccCcCcc
Q 012718 153 NL-KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR------KTKLVVIHHISNMLAS 223 (458)
Q Consensus 153 ~~-~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~ 223 (458)
+ ++||.|+++.|+|+ .+...++..|++++.++++++ +.+|+++|++.+++ ++++|++++++||||.
T Consensus 178 -~~~~gd~Vlv~~p~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~ 252 (500)
T 3tcm_A 178 -IRNEKDGILVPIPQYP----LYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQ 252 (500)
T ss_dssp -CCSTTEEEEEEESCCT----HHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCC
T ss_pred -cCCCCCEEEEeCCCcH----hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcc
Confidence 4 78999999999999 445566777999999998865 47899999999976 6899999999999999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEeccccCCccc-----CC-------C---CCCCCcEEEecccCCC-CCCc--eeEEEE
Q 012718 224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----VD-------V---QGLDADFLVASSHKMC-GPTG--IGFLFG 282 (458)
Q Consensus 224 ~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-----~~-------~---~~~~~d~~~~s~~K~~-gp~g--~G~l~~ 282 (458)
+++ +++|+++|+++|+++|+|++|+..... .+ + ......+++.|+||.+ |++| +||+++
T Consensus 253 ~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 332 (500)
T 3tcm_A 253 VLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEI 332 (500)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEE
Confidence 998 567777799999999999999853321 11 1 1111246778999976 7777 899998
Q ss_pred ---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH-----------HHHHhCHHHHHHH
Q 012718 283 ---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID-----------YLSTIGMQKIHAY 348 (458)
Q Consensus 283 ---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~-----------~~~~~g~~~~~~~ 348 (458)
++++++.+..... ...+++.....++..+++ +... ++++.++
T Consensus 333 ~~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~ 388 (500)
T 3tcm_A 333 TGFSAPVREQIYKIAS----------------------VNLCSNITGQILASLVMNPPKASDESYASYKAE--KDGILAS 388 (500)
T ss_dssp ESCCTTHHHHHHHHHH----------------------TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHH--HHHHHHH
T ss_pred eCCCHHHHHHHHHHHh----------------------cccCCCHHHHHHHHHHhcCccccchhHHHHHHH--HHHHHHH
Confidence 7777665543211 123566666666666664 3333 5778889
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC------------CChH-HHH-HHHhhhcCeEeccCCCCC
Q 012718 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN------------IHPT-DIA-TLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------~~~~-~~~-~~l~~~~gi~~~~g~~~~ 414 (458)
++++++++.+.|++++++++..+.. +.++++++.- .... .++ +.|.+. ||.+.+|+.|.
T Consensus 389 l~~~~~~l~~~L~~~~g~~~~~~~g------~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~-gI~v~pg~~f~ 461 (500)
T 3tcm_A 389 LARRAKALEHAFNKLEGITCNEAEG------AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLEST-GIVVVPGSGFG 461 (500)
T ss_dssp HHHHHHHHHHHHHTSTTEECCCCCB------TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHH-CEECEESTTTC
T ss_pred HHHHHHHHHHHHhcCCCcEEecCCe------EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHC-CEEEEeCcccC
Confidence 9999999999999999998875541 3355544431 1112 223 455566 99999998765
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.. ...+++|++++ .+++++++++++|.++++++.+
T Consensus 462 ~~-----~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 462 QV-----PGTWHFRCTIL--PQEDKIPAVISRFTVFHEAFMS 496 (500)
T ss_dssp CC-----TTCCBEEEESC--SCTTTHHHHHHHHHHHHHHHHH
T ss_pred CC-----CCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 31 12568999999 7889999999999999887654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=250.74 Aligned_cols=316 Identities=17% Similarity=0.202 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+..+++++.+++++|.+ ++++++|+++|++.++.++ +++||+|+++.++|+++...+...++..|++++.++
T Consensus 55 ~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~al~~l----~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 127 (412)
T 2cb1_A 55 DPTAKALEERLKALEGAL---EAVVLASGQAATFAALLAL----LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVD 127 (412)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT----CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEEC
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence 356788999999999986 8999999999999999987 689999999999999877666665667799999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
. |++++++.+++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.........++|++++|+|
T Consensus 128 ~------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~ 201 (412)
T 2cb1_A 128 P------EPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLT 201 (412)
T ss_dssp S------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETT
T ss_pred C------CHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCc
Confidence 6 4899999999999999999999999999999999999999999999999999873222222457999999999
Q ss_pred CCCC-CCc-eeEEEEeccccc-----cCC-CccccCcceEeeecCCCCCCCCCCcc--C-CC-CCCHHHHHHHHHHHHHH
Q 012718 270 KMCG-PTG-IGFLFGKSDLLS-----AMP-PFLGGGEMISDVFLDHSTFADPPSRF--E-AG-TPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 270 K~~g-p~g-~G~l~~~~~~~~-----~l~-~~~~g~~~~~~~~~~~~~~~~~~~~~--~-~g-t~~~~~~~~l~~al~~~ 337 (458)
|+++ |.+ +|++++.++... .+. +...|.... ..+ ....+....+.+ . .| ..+....+.....++.
T Consensus 202 K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~-~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~- 278 (412)
T 2cb1_A 202 KWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPW-EAL-RARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET- 278 (412)
T ss_dssp TTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------H-HHH-GGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-
T ss_pred ccccCCCCcEEEEEEeccccccccccccccccccccchh-hcc-chHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch-
Confidence 9765 555 788877663211 111 111111000 000 000000000000 0 11 2222222222222222
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe-CCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCeE
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSIPNIRIY-GPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGVA 406 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~ 406 (458)
++...++..++.+++.+.|.+.+++.+. .+..... ...++++.|.+ + +.+++.+.+.+. ||.
T Consensus 279 ----l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~~~~~~~l~~~-~i~ 351 (412)
T 2cb1_A 279 ----VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-DLERASRFLGAI-RLL 351 (412)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-SHHHHHHHHHHC-SSE
T ss_pred ----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-CHHHHHHHHHhC-Cee
Confidence 3445556678899999999998888743 3321100 13467999999 6 677788888776 999
Q ss_pred eccCC---------CCChhhHh--------hcCC-CCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 407 TRSGH---------HCAQPLHR--------YLGV-NASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 407 ~~~g~---------~~~~~~~~--------~~g~-~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+ .++ +|....+. .+|. ++.||+|++.++++++|+.+.++|++
T Consensus 352 ~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 352 K-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp E-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred e-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 8 773 56443322 2343 68999999999999999999998864
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=260.57 Aligned_cols=346 Identities=12% Similarity=0.117 Sum_probs=226.8
Q ss_pred CCeEEecCCCCCCCc---HHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc------CCCCCCcEEEeC
Q 012718 66 KKLVYLDNAATSQKP---IAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI------NASDSGEIVFTK 136 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~v~~t~ 136 (458)
++++.|..+.....| +.+.+++.+.+.... ......++.......++|+++|+++ +++++ +|++|+
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~ 105 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGK----AADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQ-NIALTN 105 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTH----HHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGG-GEEEES
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCc----ccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcc-cEEEeC
Confidence 578999988766533 334444444433210 0001111222344567888888887 45554 999999
Q ss_pred ChhHHHHHHHHHcCCCCCCCCC-----EEEEc-CCCCccchHHHHHHHH--HcCCeEEEEeCCC-CCCCCHHHHHHhhcC
Q 012718 137 NATEAINLVAYSWGLSNLKSGD-----EVILT-VAEHHSAIVPWQLVAQ--KTGANLKFLNLND-DESPDLDKLKEMLSR 207 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~-----~vl~~-~~~~~s~~~~~~~~a~--~~g~~~~~v~~~~-~~~~d~~~l~~~l~~ 207 (458)
|+|+|+++++.++ .++|| +|+++ .|+|++.......... ..+..+..++.+. ++.+|++.++ +++
T Consensus 106 G~t~al~~~~~~l----~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~ 179 (417)
T 3g7q_A 106 GSQSAFFYLFNLF----AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGE 179 (417)
T ss_dssp CHHHHHHHHHHHH----SBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCT
T ss_pred CcHHHHHHHHHHH----cCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--ccc
Confidence 9999999999998 56776 89997 9999854322211101 1233444454331 2457888887 777
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCCCCCc--e
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMCGPTG--I 277 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~gp~g--~ 277 (458)
++++|++++++||||.++| +++|+++|++||+++|+|++|+.+.. .......+.+++++|+|| ++++| +
T Consensus 180 ~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~ 258 (417)
T 3g7q_A 180 ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRC 258 (417)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCC
T ss_pred CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccCCCcce
Confidence 8999999999999999999 88999999999999999999984321 111223467899999999 46556 9
Q ss_pred eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH----H-HHHHHHHH
Q 012718 278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ----K-IHAYEMEL 352 (458)
Q Consensus 278 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~----~-~~~~~~~l 352 (458)
|+++.++++++.+......+ ..+++.....++...++ ...+. + ++++++++
T Consensus 259 G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~ 314 (417)
T 3g7q_A 259 GIIIANDKTITAIANMNGII---------------------SLAPGGMGPAMMCEMIK---RNDLLRLSETVIKPFYYQR 314 (417)
T ss_dssp EEEECCHHHHHHHHHHHHHH---------------------CCCCCSHHHHHHHHHHH---TTCHHHHHHHTHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHhhcce---------------------eeCCCcHHHHHHHHHHc---CcchHHHHHHHHHHHHHHH
Confidence 99999888776665332211 11233333333333333 22221 2 55566667
Q ss_pred HHHHHHHHhc-CC--CEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcC-CCCe
Q 012718 353 AKYLYENLLS-IP--NIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLG-VNAS 426 (458)
Q Consensus 353 ~~~l~~~L~~-~~--~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g-~~~~ 426 (458)
++.+.+.|.+ ++ ++++..+. .+.++++.++. .+..++.+.|.++ ||.+++|..|.......++ .+++
T Consensus 315 ~~~~~~~l~~~l~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~~~~~~ 387 (417)
T 3g7q_A 315 VQQTIAIIRRYLSEERCLIHKPE------GAIFLWLWFKDLPITTELLYQRLKAR-GVLMVPGHYFFPGLDKPWPHTHQC 387 (417)
T ss_dssp HHHHHHHHHHHCCTTTCEEECCC------BSSEEEEECTTCSSCHHHHHHHHHHT-TEECEEGGGGCTTBSSCCGGGGGE
T ss_pred HHHHHHHHHHhcccCCceeeCCC------cceEEEEEcCCCCCCHHHHHHHHHHC-CEEEECchhhCCCCccccccCCCe
Confidence 7777777654 34 46766553 25688898874 5788999999877 9999999866442110000 0468
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 427 ARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 427 lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+|||++. +++|+++++++|.++++++.+
T Consensus 388 iRis~~~--~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 388 MRMNYVP--EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp EEEESCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecC--CHHHHHHHHHHHHHHHHHHHh
Confidence 9999994 999999999999999987654
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=253.74 Aligned_cols=301 Identities=13% Similarity=0.105 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.+|+++|.+ ++++++||++|+++++.++ +++||+|+++.+.|+++...+....+..|++++.++
T Consensus 81 ~p~~~~le~~lA~l~g~~---~~i~~ssGt~Ai~~al~~l----~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~ 153 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGGA---GCVLFPCGAAAVANSILAF----IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFD 153 (415)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT----CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred CchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEEC
Confidence 455678999999999986 5677789999999999987 689999999999999887766666667899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh--cCcEEEEeccccCCcccCCCCCCCCcEEEec
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVVDVQGLDADFLVAS 267 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s 267 (458)
.+ |++++++++++++++|++++++||+|.+.|+++|+++|++ +|+++|+|++|+.+.....+ ++++|++++|
T Consensus 154 ~~-----d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~g~Div~~S 227 (415)
T 2fq6_A 154 PL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DFGIDVSIQA 227 (415)
T ss_dssp TT-----CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GGTCSEEEEE
T ss_pred CC-----CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-ccCCeEEEEe
Confidence 65 8899999999999999999999999999999999999999 99999999999966431112 4579999999
Q ss_pred ccCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 268 SHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 268 ~~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
+||++|+.| +|+++.++++++.+..... .+ .++.+....+.+..+++.+ ..
T Consensus 228 ~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~--------------------~~-G~~~~~~~a~~~~~~l~~l-----~~ 281 (415)
T 2fq6_A 228 ATKYLVGHSDAMIGTAVCNARCWEQLRENAY--------------------LM-GQMVDADTAYITSRGLRTL-----GV 281 (415)
T ss_dssp TTTTTTCSSSCCCEEEEECTTTHHHHHHHHH--------------------HT-TCCCCHHHHHHHHHHHHHH-----HH
T ss_pred CccccCCCCCceEEEEEeCHHHHHHHHHHHH--------------------hc-CCCCCHHHHHHHHhhhhHH-----HH
Confidence 999888776 7999998876655442211 00 1223332222232333333 33
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEE-eCCCCCC-c---------CccccEEEEEeCCC-ChHHHHHHHhhh--cCeEeccC
Q 012718 345 IHAYEMELAKYLYENLLSIPNIRI-YGPKPSE-H---------VQRAALCSFNVENI-HPTDIATLLDQQ--YGVATRSG 410 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~~-~~~~~~~-~---------~~~~~~v~~~~~~~-~~~~~~~~l~~~--~gi~~~~g 410 (458)
..++..++++.+.+.|.+.|.+.. ..+.-.. + ...+++++|.+++. +..+..+.+... +++.++.|
T Consensus 282 r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G 361 (415)
T 2fq6_A 282 RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWG 361 (415)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCC
Confidence 445556777888888888776653 2221100 0 12467999999863 233444444322 25667778
Q ss_pred CCCChhh--------H----hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 411 HHCAQPL--------H----RYLGV-NASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 411 ~~~~~~~--------~----~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
+.|+... + ..+|. ++.||+|++..+++++|+.+.++|++
T Consensus 362 ~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 362 GYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp SSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 7765322 1 12454 57999999999999999999888864
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=248.64 Aligned_cols=331 Identities=16% Similarity=0.170 Sum_probs=234.6
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
.++.+.+++.+.+.... + ......+++++.+++++|.+ ++++++|||+|++.++.++ .+++||
T Consensus 15 ~~~~~~~a~~~~~~~~~-------~----~~~~~~~~l~~~la~~~~~~---~~i~~~sgt~al~~~l~~l---~~~~gd 77 (373)
T 3frk_A 15 IEYEIKFKFEEIYKRNW-------F----ILGDEDKKFEQEFADYCNVN---YCIGCGNGLDALHLILKGY---DIGFGD 77 (373)
T ss_dssp HHHHHHHHHHHHHHHTC-------C----SSSHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHT---TCCTTC
T ss_pred CCHHHHHHHHHHHHCCC-------c----cCCchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHc---CCCCcC
Confidence 45667777777665421 1 12356778999999999986 8999999999999999988 368999
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV 237 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~ 237 (458)
+|+++.++|++.... ++..|++++.++++ +++.+|++++++++++++++|+ ++|+||...|+++|.++|+++
T Consensus 78 ~Vi~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~ 150 (373)
T 3frk_A 78 EVIVPSNTFIATALA----VSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKY 150 (373)
T ss_dssp EEEEETTSCTHHHHH----HHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHH
T ss_pred EEEECCCCcHHHHHH----HHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHc
Confidence 999999999976443 45569999999988 4578899999999999998888 667899999999999999999
Q ss_pred CcEEEEeccccCCcccCCCCCCC--CcEEEeccc--CCCCCCc-eeEEEEecc-ccccCCCccccCcceEeeecCCCCCC
Q 012718 238 GAKVLVDACQSVPHMVVDVQGLD--ADFLVASSH--KMCGPTG-IGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFA 311 (458)
Q Consensus 238 ~~~vivD~a~~~g~~~~~~~~~~--~d~~~~s~~--K~~gp~g-~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~ 311 (458)
|+++|+|++|+.|.. ++....+ .|++++|++ |++|+.| +|+++.+++ +.+.+.....++... .+.
T Consensus 151 ~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~--------~~~ 221 (373)
T 3frk_A 151 NLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEK--------KYH 221 (373)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSB--------TTB
T ss_pred CCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCccc--------CCc
Confidence 999999999998876 5544445 799999966 9888744 788887653 544444433322211 010
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC
Q 012718 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH 391 (458)
Q Consensus 312 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 391 (458)
. ...|... .+..+.+++......+++++.++.+++.+++.+.|.+++ +.+...... ....+..|.+...+
T Consensus 222 ~----~~~g~~~--~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~---~~~~~~~~~~~~~~ 291 (373)
T 3frk_A 222 H----IYKGFNS--RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADY---AKHVWYTFVIRSEK 291 (373)
T ss_dssp C----CSCCCBC--CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTT---EECCCSSEEEEESS
T ss_pred c----ccccccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCC---CceeeEEEEEEeCC
Confidence 0 1111100 112333344444444578889999999999999999885 665433211 12223333333336
Q ss_pred hHHHHHHHhhhcCeEeccCC----CCChhhHhhcCC------------CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 392 PTDIATLLDQQYGVATRSGH----HCAQPLHRYLGV------------NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 392 ~~~~~~~l~~~~gi~~~~g~----~~~~~~~~~~g~------------~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
..++.+.|.++ ||.++++. +|.+. ...++. .+.+|++++.++|++||+++++.|+++..+-
T Consensus 292 ~~~l~~~L~~~-gI~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~ 368 (373)
T 3frk_A 292 RDELQKYLNNN-GIGTLIHYPIPIHLQQA-YKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLEH 368 (373)
T ss_dssp HHHHHHHHHHT-TBCCBCSCSSCGGGSGG-GGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHC-CCCcccCcCCccccChH-HHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 78999999998 99998654 22221 112221 2689999999999999999999998876543
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=250.87 Aligned_cols=326 Identities=16% Similarity=0.176 Sum_probs=225.2
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
..+|+|+++....+++.+.+++.+... +... +.......++++++++++|.+ ++++++|||+|+.++
T Consensus 3 ~~~i~~~~~~~~~p~~~~~~a~~~~~~--------~~~~--y~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~~ 69 (347)
T 1jg8_A 3 HMMIDLRSDTVTKPTEEMRKAMAQAEV--------GDDV--YGEDPTINELERLAAETFGKE---AALFVPSGTMGNQVS 69 (347)
T ss_dssp --CEECSCGGGCCCCHHHHHHHHTCCC--------CCGG--GTCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHH
T ss_pred ceEEEeccccCCCCCHHHHHHHhcCCC--------CCcc--cCCChHHHHHHHHHHHHhCCc---eEEEecCcHHHHHHH
Confidence 356899999988888888887754311 0001 112334668999999999985 778899999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecccC
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHISN 219 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~n 219 (458)
+.++ +++||+|++++++|.+.... ...+...|++++.+ .++++.+|++++++++++ ++++|++++++|
T Consensus 70 ~~~~----~~~gd~Vl~~~~~~~~~~~~-~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~n 143 (347)
T 1jg8_A 70 IMAH----TQRGDEVILEADSHIFWYEV-GAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHN 143 (347)
T ss_dssp HHHH----CCTTCEEEEETTCHHHHSST-THHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBT
T ss_pred HHHh----cCCCCEEEEcCcchhhhccc-cchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEecccc
Confidence 9887 68999999999999754321 12455679999988 555677899999999975 689999999999
Q ss_pred cC-ccccc---HHHHHHHHHhcCcEEEEeccccCCc---ccCCCCC--CCCcEEEecccCCCCCCcee-EEEEecccccc
Q 012718 220 ML-ASILP---IEEIVHWSHDVGAKVLVDACQSVPH---MVVDVQG--LDADFLVASSHKMCGPTGIG-FLFGKSDLLSA 289 (458)
Q Consensus 220 ~t-G~~~~---l~~i~~l~~~~~~~vivD~a~~~g~---~~~~~~~--~~~d~~~~s~~K~~gp~g~G-~l~~~~~~~~~ 289 (458)
|| |.++| +++|.++|+++|+++|+|++|..+. ...+... .+.|.+++|+||+++++ +| +++.++++++.
T Consensus 144 pt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~-~G~~~~~~~~~~~~ 222 (347)
T 1jg8_A 144 RSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDRDFIER 222 (347)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECHHHHHH
T ss_pred ccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC-ceEEEEcCHHHHHH
Confidence 99 99988 4688899999999999999985432 1112111 24788888999977743 45 56667766655
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
+..+...++. . ...+.....+...+++.. .+.+.+ ..++++++.+.|+++ ++++.
T Consensus 223 ~~~~~~~~~~----------------~---~~~~~~~~~~~~~~l~~~----~~~~~~-~~~~~~~l~~~L~~~-~~~~~ 277 (347)
T 1jg8_A 223 ARKARKMLGG----------------G---MRQAGVLAAAGIIALTKM----VDRLKE-DHENARFLALKLKEI-GYSVN 277 (347)
T ss_dssp HHHHHHHHTC----------------C---CSSTHHHHHHHHHHHHHS----STTHHH-HHHHHHHHHHHHHHH-TCBCC
T ss_pred HHHHHHHcCC----------------c---hhHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHhc-Cceec
Confidence 4322111000 0 011111222222333321 122222 234667778888776 66543
Q ss_pred CCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
..+ ..++++++.++ +.+..++.+.|.++ ||.++++. .+++|++++.+++++|+++++++|
T Consensus 278 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~------------~~~iRl~~~~~~~~e~i~~~~~~l 339 (347)
T 1jg8_A 278 PED-----VKTNMVILRTDNLKVNAHGFIEALRNS-GVLANAVS------------DTEIRLVTHKDVSRNDIEEALNIF 339 (347)
T ss_dssp GGG-----CCSSEEEEECTTSSSCHHHHHHHHHHH-TEECEEEE------------TTEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCC-----CcceEEEEEcccccCCHHHHHHHHHHC-CCEEecCC------------CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 222 12678899987 45688999999888 99998643 468999999889999999999999
Q ss_pred HHHHHhh
Q 012718 448 NETVSFF 454 (458)
Q Consensus 448 ~~~~~~~ 454 (458)
+++++++
T Consensus 340 ~~~l~~~ 346 (347)
T 1jg8_A 340 EKLFRKF 346 (347)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988753
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-31 Score=259.12 Aligned_cols=284 Identities=17% Similarity=0.193 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+++++.+++ +|++ +++++|+|+|+|+..++.++ +++||+|++++++|++...++ ...|++++.++.
T Consensus 57 ~~~~~~~~~la~-~g~~--~~v~~~~G~t~a~~~~~~a~----~~~gd~Vlv~~~~h~s~~~~~----~~~G~~~~~v~~ 125 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY--DGYFLVNGTTSGILSVIQSF----SQKKGDILMARNVHKSVLHAL----DISQQEGHFIET 125 (446)
T ss_dssp SHHHHHHHHHCS-CTTE--EEEEESSHHHHHHHHHHHTT----TTSSSCEEECTTCCHHHHHHH----HHHTCCEEECEE
T ss_pred hHHHHHHHHHHh-cCCC--ceEEEeCCHHHHHHHHHHHh----cCCCCEEEEecCccHHHHHHH----HHcCCeEEEEeC
Confidence 456789999999 9987 38999999999999999987 689999999999999776544 345999999988
Q ss_pred --CCC----CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCC
Q 012718 191 --NDD----ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGL 259 (458)
Q Consensus 191 --~~~----~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~ 259 (458)
+++ +.+|++++ +.++++++++++ .|++|.+.|+++|.++|+++|+++|+|++|+. .. +.+....
T Consensus 126 ~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~ 200 (446)
T 2x3l_A 126 HQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNY 200 (446)
T ss_dssp EECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGG
T ss_pred eeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHc
Confidence 554 45688877 456789999999 57799999999999999999999999999986 22 3444455
Q ss_pred CCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH
Q 012718 260 DADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS 338 (458)
Q Consensus 260 ~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 338 (458)
++|+++.|+|| ++|+.|+|+++++++.++ +.++..++ ..+..+++++..++++.++++++.
T Consensus 201 g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~~-----------------~~~~~~s~~~~~~aal~~a~~~l~ 262 (446)
T 2x3l_A 201 QADYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEYL-----------------SYFQTSSPSYLIMASLESAAQFYK 262 (446)
T ss_dssp TCSEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHHH-----------------HHHSCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCccccccccccEEEEEcCCcCC-HHHHHHHH-----------------HHHcCCCchHHHHHHHHHHHHHHH
Confidence 78999999999 778889999999988654 22221111 134567899988889988999998
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEec-cCCCCChhh
Q 012718 339 TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATR-SGHHCAQPL 417 (458)
Q Consensus 339 ~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~-~g~~~~~~~ 417 (458)
..|.+++.++.+++++++.+. ++++..+.. ...+++.+++.+..++.+.|.++ ||.++ +|
T Consensus 263 ~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~------~~~l~i~~~~~~~~~l~~~L~~~-GI~v~~~g------- 323 (446)
T 2x3l_A 263 TYDSTLFFAKRAQLIECLENK-----GFEMLQVDD------PLKLLIKYEGFTGHDIQNWFMNA-HIYLELAD------- 323 (446)
T ss_dssp HCCCHHHHHHHHHHHHHHHHH-----TCEEEECSS------TTEEEEECTTSCHHHHHHHHHHT-TEEESEEC-------
T ss_pred HhCHHHHHHHHHHHHHHHHHc-----CCEECcCCC------CeEEEEEeCCcCHHHHHHHHHHC-CCEEEecC-------
Confidence 877777888888999888887 666665431 23688888877888999999999 99986 43
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++|++++.+++++|+ +++++|+++++++
T Consensus 324 ------~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 324 ------DYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp ------SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred ------CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 35899999998999999 9999999998765
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=246.40 Aligned_cols=333 Identities=15% Similarity=0.131 Sum_probs=236.8
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
.++.+.+++.+.+... .+. ......++++.+++++|.+ ++++++|||+|+..++.++. +++||
T Consensus 42 ~~~~v~~a~~~~~~~~-------~y~----~~~~~~~l~~~la~~~~~~---~~v~~~~Gt~a~~~~l~~~~---~~~gd 104 (399)
T 2oga_A 42 LRAETDAAIARVLDSG-------RYL----LGPELEGFEAEFAAYCETD---HAVGVNSGMDALQLALRGLG---IGPGD 104 (399)
T ss_dssp THHHHHHHHHHHHHHT-------CCS----SSHHHHHHHHHHHHHTTSS---EEEEESCHHHHHHHHHHHTT---CCTTC
T ss_pred CCHHHHHHHHHHHhcC-------CCC----CchhHHHHHHHHHHHHCCC---eEEEecCHHHHHHHHHHHhC---CCCcC
Confidence 3478888888887541 111 1245678999999999986 67889999999999999873 67899
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV 237 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~ 237 (458)
+|+++.++|++. ...++..|++++.+++++ ++.+|++++++.+++++++|+ ++||||.+.|+++|.++|+++
T Consensus 105 ~vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~ 177 (399)
T 2oga_A 105 EVIVPSHTYIAS----WLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRH 177 (399)
T ss_dssp EEEEESSSCTHH----HHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHH
T ss_pred EEEECCCccHHH----HHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHc
Confidence 999999999964 445567799999999886 478899999999988888877 467899999999999999999
Q ss_pred CcEEEEeccccCCcccCCCCCCC--CcEEEecc--cCCCCCCc-eeEEEEe-ccccccCCCccccCcceEeeecCCCCCC
Q 012718 238 GAKVLVDACQSVPHMVVDVQGLD--ADFLVASS--HKMCGPTG-IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFA 311 (458)
Q Consensus 238 ~~~vivD~a~~~g~~~~~~~~~~--~d~~~~s~--~K~~gp~g-~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 311 (458)
|+++|+|++|+.+.. .+....+ .|++++|+ +|++|+.| +|+++.+ +++++.+.+....+.. ..|.
T Consensus 178 ~~~li~Dea~~~g~~-~~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~--------~~~~ 248 (399)
T 2oga_A 178 GLHIVEDAAQAHGAR-YRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSR--------QKYS 248 (399)
T ss_dssp TCEECEECTTCTTCE-ETTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCS--------STTC
T ss_pred CCEEEEECcccccCc-cCCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcc--------cccc
Confidence 999999999998754 2322233 69999999 59888755 7888886 5666555433221110 0011
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeCCC
Q 012718 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVENI 390 (458)
Q Consensus 312 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 390 (458)
.....+ ..+.+....+++..+++.+ +.+.++.+++.+++.+.|.+++++++...+. ...+ ++.|.+...
T Consensus 249 ~~~~g~-~~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~----~~~~~~~~~~~~~~ 318 (399)
T 2oga_A 249 HETKGT-NSRLDEMQAAVLRIRLAHL-----DSWNGRRSALAAEYLSGLAGLPGIGLPVTAP----DTDPVWHLFTVRTE 318 (399)
T ss_dssp CCSCCC-BCCCCHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHTTTCTTCBCCCCCT----TEECCCSSEEEECS
T ss_pred cccccc-CCCcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCCCccccCCCC----CCcceeEEEEEECC
Confidence 000011 1234555555554555443 4566777888999999999888877643321 1122 223554444
Q ss_pred ChHHHHHHHhhhcCeEeccCCCCC---hhhHhhcCC------------CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 391 HPTDIATLLDQQYGVATRSGHHCA---QPLHRYLGV------------NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 391 ~~~~~~~~l~~~~gi~~~~g~~~~---~~~~~~~g~------------~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+..++.+.|.++ ||.++++.... .+.+..+|. .+.+||+++.+++++|++++++.|++++++++
T Consensus 319 ~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 319 RRDELRSHLDAR-GIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp SHHHHHHHHHHT-TBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHC-CCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 678899999988 99998743111 011112221 25899999999999999999999999988764
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=256.51 Aligned_cols=341 Identities=16% Similarity=0.196 Sum_probs=235.5
Q ss_pred CCeEEecCCCCC----CCcHHHHHHHH--HHHHHhccCCCCCcchhhh-HHHHHHHHHHHHHHHHcCCCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS----QKPIAVLKALQ--NYYEAYNSNVHRGIHFLSA-KATDEYELARKKVAAFINASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~----~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~ 138 (458)
.+.+.|..+... +.|+.+.+++. +.+.. +....++ .......++|+.++++++++++ +|++|+|+
T Consensus 25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~-------~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~-~i~~t~G~ 96 (423)
T 3ez1_A 25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMD-------GLDLRNYPGGVAGLPSARALFAGYLDVKAE-NVLVWNNS 96 (423)
T ss_dssp TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEET-------TEETTSSCSCTTCCHHHHHHHHHHTTSCGG-GEEECSSC
T ss_pred CceEecCCCCCChHhCCCcHHHHHHHhhhHHhhc-------chhhhCCCCCCCChHHHHHHHHHHhCCChh-hEEEeCCc
Confidence 456788777665 34555666653 32211 1111111 1233456899999999999876 99999999
Q ss_pred hHHHH--HHHHHcCCCCCC--C---------CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhh
Q 012718 139 TEAIN--LVAYSWGLSNLK--S---------GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML 205 (458)
Q Consensus 139 t~a~~--~~~~~l~~~~~~--~---------g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l 205 (458)
++++. +++.++ ++ + ||+|+++.|+|++ +...++..|++++.+++++++ +|++.+++++
T Consensus 97 ~~al~~~~~~~~l----~~~~~g~~~~~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l 167 (423)
T 3ez1_A 97 SLELQGLVLTFAL----LHGVRGSTGPWLSQTPKMIVTVPGYDR----HFLLLQTLGFELLTVDMQSDG-PDVDAVERLA 167 (423)
T ss_dssp HHHHHHHHHHHHH----HTCCTTCSSCGGGGCCEEEEEESCCHH----HHHHHHHHTCEEEEEEEETTE-ECHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hccCCCccccccCCCCEEEEcCCCcHH----HHHHHHHcCCEEEeccCCCCC-CCHHHHHHHH
Confidence 99998 788776 34 5 6999999999984 455566779999999988765 8999999999
Q ss_pred --cCCceEEEE-ecccCcCcccccHH---HHHHHH-HhcCcEEEEeccccCCcc-------cCCC-------CCCCCcEE
Q 012718 206 --SRKTKLVVI-HHISNMLASILPIE---EIVHWS-HDVGAKVLVDACQSVPHM-------VVDV-------QGLDADFL 264 (458)
Q Consensus 206 --~~~~~~v~~-~~~~n~tG~~~~l~---~i~~l~-~~~~~~vivD~a~~~g~~-------~~~~-------~~~~~d~~ 264 (458)
.+++++|++ ++++||||.++|.+ +|+++| +++|+++|+|++|+.... +.++ ...+.+++
T Consensus 168 ~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 247 (423)
T 3ez1_A 168 GTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFV 247 (423)
T ss_dssp HSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEE
T ss_pred hhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEE
Confidence 568888864 58999999999966 888888 999999999999984221 1111 23457899
Q ss_pred EecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH-HH--Hh
Q 012718 265 VASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY-LS--TI 340 (458)
Q Consensus 265 ~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~-~~--~~ 340 (458)
+.|+||. +++.++|+++.++++++.+...... ...+++.....++..+++. .. ..
T Consensus 248 ~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~a~~~~l~~~~~~~~~ 306 (423)
T 3ez1_A 248 FASTSKITFAGAGLGFVASSEDNIRWLSKYLGA---------------------QSIGPNKVEQARHVKFLTEYPGGLEG 306 (423)
T ss_dssp EEESTTTSCSSSSCEEEEECHHHHHHHHHHHHH---------------------SCSCCCHHHHHHHHHHHHHSTTHHHH
T ss_pred EeCchhhccCCcceEEEEeCHHHHHHHHHHHhh---------------------hccCCCHHHHHHHHHHHHhccchHHH
Confidence 9999995 4445599999998877666533221 1123444444444444443 11 01
Q ss_pred CHHHHHHHHH----HHHHHHHHHHhcCC-CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEecc-CCCCC
Q 012718 341 GMQKIHAYEM----ELAKYLYENLLSIP-NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRS-GHHCA 414 (458)
Q Consensus 341 g~~~~~~~~~----~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~-g~~~~ 414 (458)
.+.+.++.++ .+.+.|.+.|.+++ ++++..+. .+.++++.+++.+..++.+.+.++ ||.+++ |.+|.
T Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~------~g~~~~~~~~~~~~~~~~~~l~~~-gv~v~~~g~~~~ 379 (423)
T 3ez1_A 307 LMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK------GGYFISLDTAEPVADRVVKLAEAA-GVSLTPAGATYP 379 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS------BSSCEEEEESSSCHHHHHHHHHHT-TEECCCTTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC------ccEEEEEECCCCcHHHHHHHHHHC-CcEEecCccccc
Confidence 1333444444 44444555555564 47776543 256899999866678888888888 999998 65553
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
... -..++++||+++.. +++++++++++|.++++++.
T Consensus 380 ~~~---~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 380 AGQ---DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp TTC---CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 210 01268999999864 99999999999999998764
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=250.18 Aligned_cols=377 Identities=12% Similarity=0.057 Sum_probs=259.8
Q ss_pred CCCccchhhhhcCC-CCcccccccCCCCeEEecCCCCCCC-cHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHH
Q 012718 41 STDSVSLGHITRPD-FPILHQEVYGSKKLVYLDNAATSQK-PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARK 118 (458)
Q Consensus 41 ~~~~~~~~~~~r~~-f~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (458)
..+..++.+.+++. .|....+.+ + -|+++-..+.. |..+.+.+...+ +.+. ..+..++...+..+++.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~--p--~~~~~~~~~~~~~~~~~~~~~~~~---n~~~--~~~~~~p~~~~lE~~v~~ 125 (481)
T 4e1o_A 55 PDSWDSIFGDIERIIMPGVVHWQS--P--HMHAYYPALTSWPSLLGDMLADAI---NCLG--FTWASSPACTELEMNVMD 125 (481)
T ss_dssp CCCHHHHHHHHHHHTGGGCCCTTS--T--TBCSSSCCCCCHHHHHHHHHHHHH---CCCC--SSTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCC--C--CeeEeCCCCCCHHHHHHHHHHHHh---Cccc--CCcCCCcHHHHHHHHHHH
Confidence 34444555555443 344333222 2 35665544433 443444444433 2222 233445566777888999
Q ss_pred HHHHHcCCCCC---------CcEEEeCChhHHHHHHHHHcCCCC---------------CCCCCEEEEcCCCCccchHHH
Q 012718 119 KVAAFINASDS---------GEIVFTKNATEAINLVAYSWGLSN---------------LKSGDEVILTVAEHHSAIVPW 174 (458)
Q Consensus 119 ~la~~~g~~~~---------~~v~~t~g~t~a~~~~~~~l~~~~---------------~~~g~~vl~~~~~~~s~~~~~ 174 (458)
.+++++|.+.. ...+||+|||+|+..++.+.+... ..+++.|+++..+|.+.
T Consensus 126 ~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~---- 201 (481)
T 4e1o_A 126 WLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSV---- 201 (481)
T ss_dssp HHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHH----
T ss_pred HHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHH----
Confidence 99999998753 157999999999999887763110 12567999999999965
Q ss_pred HHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC------ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEecccc
Q 012718 175 QLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQS 248 (458)
Q Consensus 175 ~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~ 248 (458)
.+.+...|++++.+|+++++.+|+++|+++|+++ +.+|++++++|++|.+.|+++|+++|++||+++|+|++|+
T Consensus 202 ~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g 281 (481)
T 4e1o_A 202 EKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYA 281 (481)
T ss_dssp HHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTG
T ss_pred HHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhH
Confidence 4445567999999999888999999999999763 6789999999999999999999999999999999999999
Q ss_pred CCcccCC-----CCCC-CCcEEEecccC-CCCCCceeEEEEecccc--ccCC---CccccCcceEeeecCCCCCCCCCCc
Q 012718 249 VPHMVVD-----VQGL-DADFLVASSHK-MCGPTGIGFLFGKSDLL--SAMP---PFLGGGEMISDVFLDHSTFADPPSR 316 (458)
Q Consensus 249 ~g~~~~~-----~~~~-~~d~~~~s~~K-~~gp~g~G~l~~~~~~~--~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (458)
.+....+ +... .+|++++++|| +++|.|+|+++++++.. +.+. .+..+... ...+......
T Consensus 282 ~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~-------~~~~~~~~~~ 354 (481)
T 4e1o_A 282 GTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS-------GVATDFMHWQ 354 (481)
T ss_dssp GGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT-------TTSCCGGGGS
T ss_pred HHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc-------CCCCCccccc
Confidence 7654211 1111 25999999999 56699999999987532 2221 11111000 0000000011
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC--ChHH
Q 012718 317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI--HPTD 394 (458)
Q Consensus 317 ~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 394 (458)
.+.+.+ ...+.+.++++.+...|++++.++..++++++.+.|++++++++..++. .++++|++++. ...+
T Consensus 355 ~~~~r~--~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~------~~~v~f~~~~~~~~~~~ 426 (481)
T 4e1o_A 355 IPLSRR--FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRH------LGLVVFRLKGPNSLTEN 426 (481)
T ss_dssp SSSCCC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCC------SSEEEEEESSCHHHHHH
T ss_pred ccCCCC--ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc------eeEEEEEeCCchHHHHH
Confidence 222222 2456777888888777899999999999999999999999999876542 67999998753 2467
Q ss_pred HHHHHhhhcCe-EeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhh
Q 012718 395 IATLLDQQYGV-ATRSGHHCAQPLHRYLGVNASARASLH-FYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 395 ~~~~l~~~~gi-~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.+.|.++ |+ .+.++. ++...++|+++. +.++++||+++++.|+++.+++.
T Consensus 427 l~~~L~~~-g~~~~~~~~---------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 427 VLKEIAKA-GRLFLIPAT---------IQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp HHHHHHHH-CSSBCEEEE---------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CeEEEEeeE---------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 88888888 74 433322 222568999976 44589999999999999988764
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-30 Score=249.70 Aligned_cols=333 Identities=17% Similarity=0.184 Sum_probs=223.3
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
.-.++.+.+...+.+.+++..+. +.. +.+.++....+..+++++.+++++|.+ +.++++||++|+..++.+
T Consensus 29 ~~p~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~r~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~a~~~~l~~ 99 (398)
T 1gc0_A 29 VPPVYQTATFTFPTVEYGAACFA-----GEQ-AGHFYSRISNPTLNLLEARMASLEGGE---AGLALASGMGAITSTLWT 99 (398)
T ss_dssp SCCBCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHH
T ss_pred CCCccCCCccccCCHHHHHHhhc-----CCc-CCCcccCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHH
Confidence 33455555555555555543211 111 112222223466788999999999986 566677778999999998
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
+ +++||+|+++.++|++....+..+++..|++++.++.+ |++++++.+++++++|++++++||||.+.|++
T Consensus 100 ~----~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~ 170 (398)
T 1gc0_A 100 L----LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIA 170 (398)
T ss_dssp H----CCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred H----hcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCcccccHH
Confidence 8 67999999999999988766665557789999999874 89999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC-CCc--eeEEEEeccccc-cCCCccccCcceEeee
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG-PTG--IGFLFGKSDLLS-AMPPFLGGGEMISDVF 304 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~g--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~ 304 (458)
+|.++|+++|+++|+|++|+.+.....+ ..++|+++.|+||++| |.+ +|+++++++.++ .+.+...+
T Consensus 171 ~i~~l~~~~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~-------- 241 (398)
T 1gc0_A 171 GVAKIARKHGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD-------- 241 (398)
T ss_dssp HHHHHHGGGTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH--------
T ss_pred HHHHHHHHcCCEEEEECCCcccccCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc--------
Confidence 9999999999999999999976643322 3579999999999777 444 599999887554 34332221
Q ss_pred cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE--------------EeC
Q 012718 305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR--------------IYG 370 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~--------------~~~ 370 (458)
+..++.+.....++..+++.+ ....++..++.+.+.+.|.+++.++ +..
T Consensus 242 ------------~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~ 304 (398)
T 1gc0_A 242 ------------MTGAVLSPHDAALLMRGIKTL-----NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304 (398)
T ss_dssp ------------HTCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC------------
T ss_pred ------------cCCCCCCHHHHHHHHhccchH-----HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHH
Confidence 012455655555544455433 3444555666667777776654433 222
Q ss_pred CCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEecc---CCC------CC------hhh--HhhcCC-CCeEEEeeC
Q 012718 371 PKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRS---GHH------CA------QPL--HRYLGV-NASARASLH 432 (458)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~---g~~------~~------~~~--~~~~g~-~~~lRis~~ 432 (458)
+.. ...++++.|.+++. ..++.+.+.+. ++..+. |+. |. .+. ...+|. ++.+|+|++
T Consensus 305 ~~~---~~~~~~~~~~l~~~-~~~~~~~l~~~-~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g 379 (398)
T 1gc0_A 305 QQM---SQPGGMIAFELKGG-IGAGRRFMNAL-QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG 379 (398)
T ss_dssp -------CCTTEEEEEETTH-HHHHHHHHHHC-SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC
T ss_pred hhC---CCCceEEEEEECCC-HHHHHHHHHhC-CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC
Confidence 110 13477999998752 34556666655 876654 421 21 111 123444 589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 012718 433 FYNTKEDVDEFIHALNET 450 (458)
Q Consensus 433 ~~~t~~di~~l~~~l~~~ 450 (458)
..+++++|+.+.++|+++
T Consensus 380 ~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 380 LEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 999999999999988764
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-29 Score=240.61 Aligned_cols=334 Identities=17% Similarity=0.123 Sum_probs=233.1
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
.++.+.+++.+.+.... . . +......+++++.+++++|.+ +.|+++ +||+|+++++.+++ +++||
T Consensus 15 ~~~~~~~a~~~~l~~~~--~---~----~~~~~~~~~l~~~la~~~~~~--~~i~~~-sGt~al~~~l~~l~---~~~gd 79 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQ--W---W----RMGGDEVNSFEREFAAHHGAA--HALAVT-NGTHALELALQVMG---VGPGT 79 (388)
T ss_dssp CCHHHHHHHHHHHHTSC--C---B----TTTCSHHHHHHHHHHHHTTCS--EEEEES-CHHHHHHHHHHHTT---CCTTC
T ss_pred CCHHHHHHHHHHHHcCC--e---e----ecCCHHHHHHHHHHHHHhCCC--eEEEeC-CHHHHHHHHHHHcC---CCCcC
Confidence 44889999988886521 0 0 111345678999999999986 245555 55999999999873 67899
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV 237 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~ 237 (458)
+|+++.++|++.. ..++..|++++.++++++ +.+|++++++.+++++++|+ ++|+||.+.|+++|.++|+++
T Consensus 80 ~Vi~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~ 152 (388)
T 1b9h_A 80 EVIVPAFTFISSS----QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADT 152 (388)
T ss_dssp EEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHH
T ss_pred EEEECCCccHHHH----HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHc
Confidence 9999999999664 445677999999999865 78899999999988888877 789999999999999999999
Q ss_pred CcEEEEeccccCCccc--CCCCCCCCcEEEeccc--CCCCCCceeEEEEecc-c--cccCCCccccCcceEeeecCCCCC
Q 012718 238 GAKVLVDACQSVPHMV--VDVQGLDADFLVASSH--KMCGPTGIGFLFGKSD-L--LSAMPPFLGGGEMISDVFLDHSTF 310 (458)
Q Consensus 238 ~~~vivD~a~~~g~~~--~~~~~~~~d~~~~s~~--K~~gp~g~G~l~~~~~-~--~~~l~~~~~g~~~~~~~~~~~~~~ 310 (458)
|+++|+|++|+.|... .++..++ |++++|+| |.+++..+|+++.+++ + ++.+..... ++..
T Consensus 153 ~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~-~~~~---------- 220 (388)
T 1b9h_A 153 GVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHS-CGRP---------- 220 (388)
T ss_dssp TCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTB-TTCC----------
T ss_pred CCEEEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHh-CCCC----------
Confidence 9999999999987653 2333333 56666655 7665544799998876 4 343321111 1100
Q ss_pred CCCCCcc---CCCC---CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEE
Q 012718 311 ADPPSRF---EAGT---PAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCS 384 (458)
Q Consensus 311 ~~~~~~~---~~gt---~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~ 384 (458)
..+.+| ..|+ ++..+.+++...++ .+++..++.+++++++.+.|++++++++..+.+......+.+++
T Consensus 221 -~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~-----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 294 (388)
T 1b9h_A 221 -RDDRRYFHKIAGSNMRLNEFSASVLRAQLA-----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAM 294 (388)
T ss_dssp -TTCSSCCCCSCCCBCBCBHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEE
T ss_pred -ccCccceeecccccCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEE
Confidence 001111 1233 34333333322222 25667788888999999999998888887643210011246899
Q ss_pred EEeCCC---ChHHHHHHHhhhcCeEeccCCCCCh--hhHhhcCC-------------------CCeEEEeeCCCC-CHHH
Q 012718 385 FNVENI---HPTDIATLLDQQYGVATRSGHHCAQ--PLHRYLGV-------------------NASARASLHFYN-TKED 439 (458)
Q Consensus 385 ~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~~--~~~~~~g~-------------------~~~lRis~~~~~-t~~d 439 (458)
+.+++. +..++.+.|.++ ||.++++..... +.+..++. .+.+|++++..+ |++|
T Consensus 295 ~~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~ed 373 (388)
T 1b9h_A 295 FRIPGLTEERRNALVDRLVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPE 373 (388)
T ss_dssp EECTTCCHHHHHHHHHHHHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHH
T ss_pred EEeCCcCcccHHHHHHHHHHC-CCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHH
Confidence 999864 467899999988 999987643211 11111110 247999999989 9999
Q ss_pred HHHHHHHHHHHHHh
Q 012718 440 VDEFIHALNETVSF 453 (458)
Q Consensus 440 i~~l~~~l~~~~~~ 453 (458)
|+++++.|++++++
T Consensus 374 i~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 374 LHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=242.54 Aligned_cols=322 Identities=15% Similarity=0.182 Sum_probs=235.8
Q ss_pred eEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 68 LVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 68 ~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
.-|+|..+ .|..++.+.+++.+.+......... ...+..+++++.+++++|. +++++++|+++|
T Consensus 36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~~~l~~~la~~~g~---~~v~~~~~gt~a 105 (392)
T 3ruy_A 36 NRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRA-------FHSDQLGPWYEKVAKLTNK---EMVLPMNTGAEA 105 (392)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTT-------SEETTHHHHHHHHHHHHTC---SEEEEESSHHHH
T ss_pred CEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccc-------cCCHHHHHHHHHHHHhcCC---CEEEEeCcHHHH
Confidence 34566543 2335789999999887653221110 1134456788999999983 399999999999
Q ss_pred HHHHHHHcCCC-----CC-CCCCEEEEcCCCCccchHHHHHHHHHcC---------CeEEEEeCCCCCCCCHHHHHHhhc
Q 012718 142 INLVAYSWGLS-----NL-KSGDEVILTVAEHHSAIVPWQLVAQKTG---------ANLKFLNLNDDESPDLDKLKEMLS 206 (458)
Q Consensus 142 ~~~~~~~l~~~-----~~-~~g~~vl~~~~~~~s~~~~~~~~a~~~g---------~~~~~v~~~~~~~~d~~~l~~~l~ 206 (458)
+..++..+... .. ..+++|++..++|++.......+....+ ..+..++.+ |+++++++++
T Consensus 106 ~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~ 180 (392)
T 3ruy_A 106 VETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAIT 180 (392)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCC
T ss_pred HHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhc
Confidence 99999876210 00 2367999999999987654433211100 124445443 8999999999
Q ss_pred CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC--C
Q 012718 207 RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP--T 275 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp--~ 275 (458)
+++++|++++++||||.+.| +++|.++|++||+++|+|++|+ ++.. ..+.....+|+++ ++|.+++ .
T Consensus 181 ~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~--~SK~l~gG~~ 258 (392)
T 3ruy_A 181 PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYI--LGKALGGGVF 258 (392)
T ss_dssp TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTTS
T ss_pred cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEE--EchhhhCChh
Confidence 99999999999999999999 9999999999999999999995 3321 1222234578775 5696655 3
Q ss_pred ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012718 276 GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKY 355 (458)
Q Consensus 276 g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~ 355 (458)
.+|++++++++++.+.+...+. ..+.+...+.++.++++.+.. +++.+++++++++
T Consensus 259 ~~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~ 314 (392)
T 3ruy_A 259 PISCAAANRDILGVFEPGSHGS---------------------TFGGNPLACAVSIAALEVLEE---EKLTERSLQLGEK 314 (392)
T ss_dssp CCEEEEECHHHHTTCCTTSSCC---------------------SSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHH
T ss_pred hhEEEEECHHHHhhhccCCcCC---------------------CCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Confidence 4899999998877776543211 235677777777788877654 5778889999999
Q ss_pred HHHHHhcC--CCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC
Q 012718 356 LYENLLSI--PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF 433 (458)
Q Consensus 356 l~~~L~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~ 433 (458)
+.+.|+++ +.+....+ .+.++++.+++ +..++.+.|.++ ||.++++. ++++|++++.
T Consensus 315 l~~~L~~~~~~~~~~~~~-------~g~~~~~~~~~-~~~~l~~~l~~~-gi~v~~~~------------~~~iRi~~~~ 373 (392)
T 3ruy_A 315 LVGQLKEIDNPMITEVRG-------KGLFIGIELNE-PARPYCEQLKAA-GLLCKETH------------ENVIRIAPPL 373 (392)
T ss_dssp HHHHHTTCCCTTEEEEEE-------ETTEEEEEESS-CSHHHHHHHHTT-TEECCCBT------------TTEEEECCCT
T ss_pred HHHHHHHhcCCCceEEEe-------eeeEEEEEEcc-hHHHHHHHHHHC-CcEEecCC------------CCEEEEECCC
Confidence 99999887 33443322 26788888876 678899999988 99998765 6799999998
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 012718 434 YNTKEDVDEFIHALNETV 451 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~ 451 (458)
.++++|+++++++|++++
T Consensus 374 ~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 374 VISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 899999999999999876
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-29 Score=241.93 Aligned_cols=320 Identities=16% Similarity=0.166 Sum_probs=227.6
Q ss_pred CeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|.++. +.+++.+.+++.+.+.... +... .+. .....++++.+++++|.+ +++++|+|+|+
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~-~~~~-~y~-----~~~~~~l~~~la~~~g~~--~~v~~~~g~t~ 97 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLL-HVSN-LYE-----NPWQEELAHKLVKHFWTE--GKVFFANSGTE 97 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCS-CCCT-TBC-----CHHHHHHHHHHHHTSSSC--EEEEEESSHHH
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhcc-ccCc-ccC-----CHHHHHHHHHHHhhcCCC--CeEEEeCchHH
Confidence 3456665432 2278999999999887531 1111 111 234567899999999983 49999999999
Q ss_pred HHHHHHHHcCCCCC---CCC-CEEEEcCCCCccchHHHHHHHHH----cCCe-----EEEEeCCCCCCCCHHHHHHhhcC
Q 012718 141 AINLVAYSWGLSNL---KSG-DEVILTVAEHHSAIVPWQLVAQK----TGAN-----LKFLNLNDDESPDLDKLKEMLSR 207 (458)
Q Consensus 141 a~~~~~~~l~~~~~---~~g-~~vl~~~~~~~s~~~~~~~~a~~----~g~~-----~~~v~~~~~~~~d~~~l~~~l~~ 207 (458)
|+.+++.++.. .. ++| |+|++++++|++....+...... .|.. +..++. .|++++++.+++
T Consensus 98 a~~~~~~~~~~-~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~ 171 (375)
T 2eh6_A 98 SVEAAIKLARK-YWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDE 171 (375)
T ss_dssp HHHHHHHHHHH-HHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCT
T ss_pred HHHHHHHHHHH-HhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcC
Confidence 99999875210 02 567 99999999999876544332100 0111 444443 389999999988
Q ss_pred CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--CCCCCCC--CcEEEecccCCCC-CCce
Q 012718 208 KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDVQGLD--ADFLVASSHKMCG-PTGI 277 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~g-p~g~ 277 (458)
++++|++++++||||.+.| +++|.++|+++|+++|+|++|+ ++..+ +++...+ +|+++ ++|.++ +.++
T Consensus 172 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s--~SK~~~~g~~~ 249 (375)
T 2eh6_A 172 ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIA--LAKGLGGGVPI 249 (375)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTSCC
T ss_pred CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEE--EcccccCCCCe
Confidence 9999999999999999988 9999999999999999999999 55432 2233334 78875 559555 4559
Q ss_pred eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLY 357 (458)
Q Consensus 278 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~ 357 (458)
|++++++++++.+.+...+ ...++ +.....++.++++.+. ++.++++++++++.
T Consensus 250 G~~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~ 303 (375)
T 2eh6_A 250 GAILAREEVAQSFTPGSHG--------------------STFGG-NPLACRAGTVVVDEVE-----KLLPHVREVGNYFK 303 (375)
T ss_dssp EEEEEEHHHHTTCCTTSCC--------------------CSSTT-CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHhhhcCCCCC--------------------CCCCC-CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 9999999887777642111 11133 4444444445565543 67788889999999
Q ss_pred HHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCH
Q 012718 358 ENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437 (458)
Q Consensus 358 ~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~ 437 (458)
+.|++++...+ . ..+.++++.+++ +..++.+.|.++ ||.+.++. ++++|++++.++++
T Consensus 304 ~~L~~~~~~~~-~-------~~g~~~~~~~~~-~~~~~~~~l~~~-gi~~~~~~------------~~~iRi~~~~~~~~ 361 (375)
T 2eh6_A 304 EKLKELGKGKV-K-------GRGLMLGLELER-ECKDYVLKALEK-GLLINCTA------------GKVLRFLPPLIIQK 361 (375)
T ss_dssp HHHHHTTSSEE-E-------EETTEEEEECSS-CCHHHHHHHHHT-TEECEEET------------TTEEEECCCTTCCH
T ss_pred HHHHHHhcCCc-e-------EEEEEEEEEEcC-cHHHHHHHHHHC-CCEEecCC------------CCEEEEECCCCCCH
Confidence 99988743211 1 226788898875 467899999887 99998653 57899999988999
Q ss_pred HHHHHHHHHHHHHH
Q 012718 438 EDVDEFIHALNETV 451 (458)
Q Consensus 438 ~di~~l~~~l~~~~ 451 (458)
+|+++++++|++++
T Consensus 362 ~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 362 EHIDRAISVLREIL 375 (375)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998763
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=249.42 Aligned_cols=332 Identities=9% Similarity=0.041 Sum_probs=233.9
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHH-hccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCCCCcEEE
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEA-YNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASDSGEIVF 134 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~~v~~ 134 (458)
.+++.|..+. ..++++.+.+++.+.... ...+. ......++++++++++ +.+..++|++
T Consensus 38 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~----------~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~ 107 (418)
T 3rq1_A 38 ENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYA----------PIAGIPDFLCAAEKECFGNFRPEGHIRSIA 107 (418)
T ss_dssp GGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCC----------CTTCCHHHHHHHHHHHHGGGCCSSEEEEEE
T ss_pred CCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCC----------CCCChHHHHHHHHHHHhcccCccccccEEE
Confidence 4678888875 336778888877664332 11111 1112346777777765 3221128999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcC----Cc
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR----KT 209 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~----~~ 209 (458)
|+|+++|+..++.++ +++||+|+++.|+|+ .+...++..|++++.++++ +++.+|++.+++.+++ ++
T Consensus 108 t~g~~~al~~~~~~l----~~~gd~Vl~~~p~~~----~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~ 179 (418)
T 3rq1_A 108 TAGGTGGIHHLIHNY----TEPGDEVLTADWYWG----AYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQT 179 (418)
T ss_dssp ESHHHHHHHHHHHHH----SCTTCEEEEESSCCT----HHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCS
T ss_pred CCchHHHHHHHHHHh----cCCCCEEEECCCCch----hHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCC
Confidence 999999999999988 789999999999998 4466677789999999985 4568899999999875 56
Q ss_pred e-EEEEecc-cCcCcccccHH---HHHHHHH------hcCcEEEEeccccCCcc------c--CCCCCCCCc---EEEec
Q 012718 210 K-LVVIHHI-SNMLASILPIE---EIVHWSH------DVGAKVLVDACQSVPHM------V--VDVQGLDAD---FLVAS 267 (458)
Q Consensus 210 ~-~v~~~~~-~n~tG~~~~l~---~i~~l~~------~~~~~vivD~a~~~g~~------~--~~~~~~~~d---~~~~s 267 (458)
+ +++++++ +||||.++|.+ +|+++|+ ++|+++|+|++|..... + ........+ +++.|
T Consensus 180 ~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 259 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYS 259 (418)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEe
Confidence 5 8889999 99999999955 5556666 89999999999862111 1 112222333 78889
Q ss_pred ccCCCCCCc--eeEEEE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH---H
Q 012718 268 SHKMCGPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS---T 339 (458)
Q Consensus 268 ~~K~~gp~g--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~---~ 339 (458)
+||.+|.+| +|++++ ++++++.+........ +...++++.....++..+++... .
T Consensus 260 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~a~~~~l~~~~~~~~ 322 (418)
T 3rq1_A 260 LSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTS-----------------RATWSNICRPAMRTMANIVADPAKFKE 322 (418)
T ss_dssp STTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHH-----------------HHHTSSCCHHHHHHHHHHHTCHHHHHH
T ss_pred CCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHH-----------------hhccCCCchHHHHHHHHHhCCHHHHHH
Confidence 999888777 899998 7777666553221000 00012355555555555553211 0
Q ss_pred --hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 340 --IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 340 --~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
....+++++++++++++.+.|+++ ++++..+. .+.++++.++ +..++.+.|.++ ||.+.+|
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~~~~~~~~~~--~~~~~~~~l~~~-gi~v~~g------- 385 (418)
T 3rq1_A 323 YEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPYR------GGFFITIPTD--SANAICEELKKE-HIYVIAL------- 385 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCC------SSSEEEEECT--THHHHHHHHHHT-TEECEEC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCC------ceEEEEcCCC--CHHHHHHHHHhC-CEEEecC-------
Confidence 124567788888999999999887 77665443 1446676664 577899988877 9999886
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+++|||++ ..+++++++++++|+++++++.+
T Consensus 386 ------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~~ 417 (418)
T 3rq1_A 386 ------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSLGK 417 (418)
T ss_dssp ------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHTTC
T ss_pred ------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHHhc
Confidence 367999987 36999999999999999988754
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=253.75 Aligned_cols=347 Identities=16% Similarity=0.139 Sum_probs=246.1
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHH--hccCCCCCcchhhhHHHHHHH-HHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEA--YNSNVHRGIHFLSAKATDEYE-LARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
.+++.|..+... .++.+.+++.+.+.. ...++.. .+..+.......+ .+++.+++++|.++ ..+++++|++|+
T Consensus 23 ~~~i~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~-~~~~g~~~~~~~e~~ar~~la~~~g~~~--~~i~~~sGt~a~ 98 (407)
T 2dkj_A 23 REGLELIASENF-VSKQVREAVGSVLTNKYAEGYPGA-RYYGGCEVIDRVESLAIERAKALFGAAW--ANVQPHSGSQAN 98 (407)
T ss_dssp HTSEECCTTCCC-CCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHH
T ss_pred hcceeeccCCCC-CCHHHHHHHHhhhhcCcccCCCcc-cccCCchHHHHHHHHHHHHHHHHhCCCc--ceEEecchHHHH
Confidence 345666555544 489999999888754 1222211 1111222223344 47789999999874 334555567799
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCC--eEEEEeCCC-CCCCCHHHHHHhhcC-CceEEEEeccc
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA--NLKFLNLND-DESPDLDKLKEMLSR-KTKLVVIHHIS 218 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~--~~~~v~~~~-~~~~d~~~l~~~l~~-~~~~v~~~~~~ 218 (458)
..++.++ +++||+|++++++|++...... .++..|. ..+.+++++ ++.+|++++++.+++ ++++|++++++
T Consensus 99 ~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~ 173 (407)
T 2dkj_A 99 MAVYMAL----MEPGDTLMGMDLAAGGHLTHGS-RVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASA 173 (407)
T ss_dssp HHHHHHH----CCTTCEEEEECGGGTCCGGGTC-TTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSS
T ss_pred HHHHHHh----cCCCCEEEEecccccCccchHH-HHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccc
Confidence 9999988 6899999999999987631111 1122244 445554443 577899999999985 88999998888
Q ss_pred CcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCC---CCCcEEEecccCCC-CCCceeEEEEe-ccccccCCCc
Q 012718 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQG---LDADFLVASSHKMC-GPTGIGFLFGK-SDLLSAMPPF 293 (458)
Q Consensus 219 n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~---~~~d~~~~s~~K~~-gp~g~G~l~~~-~~~~~~l~~~ 293 (458)
|+ ...|+++|.++|+++|+++|+|++|+.|....+... ...|++++|+||++ |+.| |+++++ +++++.+.+.
T Consensus 174 ~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~ 250 (407)
T 2dkj_A 174 YP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKL 250 (407)
T ss_dssp CC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHH
T ss_pred cC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhh
Confidence 86 778999999999999999999999987543222111 13799999999954 5665 999999 6776655433
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
.. .+..++++...+.++.++++.+...+++++.++.+++++++.+.|+++ ++++..++.
T Consensus 251 ~~--------------------~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 309 (407)
T 2dkj_A 251 IF--------------------PGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGT 309 (407)
T ss_dssp HT--------------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred hc--------------------ccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCC
Confidence 21 122457777777778888888655568899999999999999999988 888875422
Q ss_pred CCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC----CCHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY----NTKEDVDEFIHAL 447 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~----~t~~di~~l~~~l 447 (458)
.++++++.++. .+..++.+.|.++ ||.++++..+.... ..+.++++|++++.+ .+++|+++++++|
T Consensus 310 -----~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~--~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l 381 (407)
T 2dkj_A 310 -----DNHLFLVDLRPKGLTGKEAEERLDAV-GITVNKNAIPFDPK--PPRVTSGIRIGTPAITTRGFTPEEMPLVAELI 381 (407)
T ss_dssp -----SSSEEEEECGGGTCCHHHHHHHHHHT-TEECEECCCTTCSS--CTTTCSEEEEECHHHHHTTCCGGGHHHHHHHH
T ss_pred -----CceEEEEECcccCCCHHHHHHHHHHc-CceecCCcCccccc--cccCCCceeeecccccccCCCHHHHHHHHHHH
Confidence 26788998873 4678899999877 99999876321000 011257899999753 6899999999999
Q ss_pred HHHHHh
Q 012718 448 NETVSF 453 (458)
Q Consensus 448 ~~~~~~ 453 (458)
++++++
T Consensus 382 ~~~~~~ 387 (407)
T 2dkj_A 382 DRALLE 387 (407)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=242.77 Aligned_cols=312 Identities=14% Similarity=0.138 Sum_probs=229.0
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
++.++.+.+++.+.+....... . .+ ..+..+++++.++++++.+.+ ++++|+|+++|+.+++.++. .+.+
T Consensus 60 g~~~~~v~~a~~~~~~~~~~~~-~-~~-----~~~~~~~l~~~la~~~~~~~~-~v~~~~gg~~a~~~al~~~~--~~~~ 129 (395)
T 1vef_A 60 GHGNPEVVEAVKRQAETLMAMP-Q-TL-----PTPMRGEFYRTLTAILPPELN-RVFPVNSGTEANEAALKFAR--AHTG 129 (395)
T ss_dssp CBTCHHHHHHHHHHHHHCCCCC-T-TS-----CCHHHHHHHHHHHHTSCTTEE-EEEEESSHHHHHHHHHHHHH--HHHS
T ss_pred CCCCHHHHHHHHHHHHhCCCCc-c-cc-----CCHHHHHHHHHHHHhcCCCcC-EEEEcCcHHHHHHHHHHHHH--HHhC
Confidence 5688999999999987632111 1 11 245667899999999987554 89999999999999998651 1246
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCe------------EEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGAN------------LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
|+.|++++++|++....+. ...|.+ +..++. .|++++++.+++++++|++++++|+||.+
T Consensus 130 ~~~vi~~~~~y~~~~~~~~---~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~~~v~~~~~~~~tG~~ 201 (395)
T 1vef_A 130 RKKFVAAMRGFSGRTMGSL---SVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEETAAVILEPVQGEGGVR 201 (395)
T ss_dssp CCEEEEETTCCCCSSHHHH---HTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTTEEEEEECSEETTTTSE
T ss_pred CCeEEEEcCCcCCCchhhh---hhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccCEEEEEEeCccCCCCcc
Confidence 8899999999987654332 223443 333432 38999999999889999999999999999
Q ss_pred cc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC-CceeEEEEeccccccCCCcc
Q 012718 225 LP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 225 ~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~ 294 (458)
.| +++|.++|+++|+++|+|++|+ ++.. +++.....+|++ |+||.+++ .++|++++++++++.+....
T Consensus 202 ~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~ 279 (395)
T 1vef_A 202 PATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKGG 279 (395)
T ss_dssp ECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTS
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccCC
Confidence 88 9999999999999999999998 3221 112223357876 67996654 45999999998777665411
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
. ....+++.....++.++++.+.. +.+.++++++++++.+.|+++.. .+....
T Consensus 280 ~---------------------~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~-- 332 (395)
T 1vef_A 280 H---------------------GTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPS-PKIREV-- 332 (395)
T ss_dssp S---------------------CCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC-TTEEEE--
T ss_pred c---------------------CCCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc-CceEEE--
Confidence 0 01224667777777778887754 45678888999999999988732 111001
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
...+.++++.+++ +..++.+.|. ++ ||.++++. ++++|++++.+++++|+++++++|++++
T Consensus 333 --~~~g~~~~~~~~~-~~~~l~~~l~~~~-gi~v~~~~------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 333 --RGMGLMVGLELKE-KAAPYIARLEKEH-RVLALQAG------------PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp --EEETTEEEEEESS-CSHHHHHHHHHHH-CEECEESS------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred --EEEEEEEEEEEcC-hHHHHHHHHHHHC-CeEEecCC------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 1225688998875 3678999998 77 99998753 5799999998899999999999999876
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=245.95 Aligned_cols=299 Identities=20% Similarity=0.171 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 109 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
.....+++++.+++++|.+ ++++++||++|++.++.++ +++||+|+++.++|++....+....+..|++++.+
T Consensus 64 ~~~~~~~l~~~la~~~g~~---~~~~~~sGt~A~~~al~~~----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v 136 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDAA---FGRAFSSGMAAADCALRAM----LRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV 136 (392)
T ss_dssp CCHHHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEE
T ss_pred CChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEe
Confidence 3455778999999999986 7899999999999999988 68999999999999987766666667789999999
Q ss_pred eCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
+.+ |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+.. .+....++|+++.|+
T Consensus 137 ~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-~~~~~~~~di~~~S~ 210 (392)
T 3qhx_A 137 ALA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-QQPLSLGADVVLHST 210 (392)
T ss_dssp CTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-CCGGGGTCSEEEEET
T ss_pred CCC-----CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-CChHHhCCcEEEEcC
Confidence 876 89999999999999999999999999999999999999999999999999986643 233356799999999
Q ss_pred cCCCCCCc---eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 269 HKMCGPTG---IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 269 ~K~~gp~g---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
||++|++| +|+++.++ ++.+.+....... ..+.+......+...++. +..
T Consensus 211 sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~---------------------g~~~~~~~~~~~~~~l~~-----l~~ 264 (392)
T 3qhx_A 211 TKYIGGHSDVVGGALVTNDEELDQSFAFLQNGA---------------------GAVPGPFDAYLTMRGLKT-----LVL 264 (392)
T ss_dssp TTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHH---------------------CCCCCHHHHHHHHHHHTT-----HHH
T ss_pred ccccCCCCCceEEEEEECcHHHHHHHHHHHHhc---------------------CCCCCHHHHHHHHhhhhH-----HHH
Confidence 99888766 89999885 5555443221110 123333333333223332 344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEe-CCCCCCc----------CccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCC
Q 012718 345 IHAYEMELAKYLYENLLSIPNIRIY-GPKPSEH----------VQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGH 411 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~----------~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~ 411 (458)
..++..++++++.+.|++.+.+... .+.-... ...+++++|.+++ .....+...+... ++.++.|+
T Consensus 265 ~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~-~~~~s~G~ 343 (392)
T 3qhx_A 265 RMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIF-ILAESLGS 343 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSS-EECSCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCc-eECCCCCC
Confidence 5566678888889999888877533 2221100 1236699999986 3345666666655 78888777
Q ss_pred CCChhhH------h-----hcCC-CCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 412 HCAQPLH------R-----YLGV-NASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 412 ~~~~~~~------~-----~~g~-~~~lRis~~~~~t~~di~~l~~~l 447 (458)
.|+...+ . .+|. ++.||+|++..+++++|+.+.++|
T Consensus 344 ~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 344 VESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp SSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 6542111 1 1222 678999999877777777666654
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=239.68 Aligned_cols=301 Identities=22% Similarity=0.244 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.+++++|.+ ++++++|+++|+..++.++ +++||+|+++.+.|++....+...++..|++++.++
T Consensus 61 ~~~~~~l~~~ia~~~g~~---~~i~~~~g~~ai~~~~~~l----~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 133 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE---ACVATSSGMGAIAATVLTI----LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFIN 133 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEeCChHHHHHHHHHHH----hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence 455678999999999985 6788888899999999988 689999999999999877666656788899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh-cCcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD-VGAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~-~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
.+ |++++++.+++++++|++++++||||.+.|+++|+++|++ +|+++|+|++|+.+.....+ ..+.|+++.|+
T Consensus 134 ~~-----d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~S~ 207 (404)
T 1e5e_A 134 TA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV-DFGVDVVVHSA 207 (404)
T ss_dssp TT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG-GGTCSEEEEET
T ss_pred CC-----CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc-ccCCEEEEEcC
Confidence 76 7889999999999999999999999999999999999999 99999999999977632112 35799999999
Q ss_pred cCCCCC-Cc--eeEEEEeccccc-cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 269 HKMCGP-TG--IGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 269 ~K~~gp-~g--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
||+++. .+ +|+++++++.++ .+.+...++ ..++.+.....++..+++. ++.
T Consensus 208 sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~--------------------~g~~~~~~~~~~~~~~l~~-----~~~ 262 (404)
T 1e5e_A 208 TKYINGHTDVVAGLICGKADLLQQIRMVGIKDI--------------------TGSVISPHDAWLITRGLST-----LNI 262 (404)
T ss_dssp TTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC--------------------CCCCCCHHHHHHHHHHHTT-----HHH
T ss_pred ccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC--------------------CCCCCCHHHHHHHHHhHhH-----HHH
Confidence 997764 44 499999998766 555433221 0123444344444444432 333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhhcCeEecc---C
Q 012718 345 IHAYEMELAKYLYENLLSIPNIR-IYGPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQYGVATRS---G 410 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~---g 410 (458)
..++..++.+.+.+.|++.+.+. +..+.-.. ....++++.|.+++. ..++.+.+.+. ||.+.. |
T Consensus 263 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~-~i~~~~~s~G 340 (404)
T 1e5e_A 263 RMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG-FEGAKKLLDNL-KLITLAVSLG 340 (404)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHHTC-SSSEESSCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC-HHHHHHHHHhC-CCceeccCCC
Confidence 44555667777777777665443 22221000 012377888888752 24555666665 884433 2
Q ss_pred ------CCCChhhHh--------hcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 411 ------HHCAQPLHR--------YLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 411 ------~~~~~~~~~--------~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+|....+. ..|. ++++|+|++. +|++++++.|+++++.+
T Consensus 341 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 341 GCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDAL 395 (404)
T ss_dssp SSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence 234332221 2343 5899999995 89999999999888764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-29 Score=241.90 Aligned_cols=345 Identities=17% Similarity=0.167 Sum_probs=239.0
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
++++.+..+.. ..++.+.+++.+.+.... +. ......+++++.+++++|.+ ++++++|||+|+..+
T Consensus 22 ~~~~~l~~~~p-~~~~~~~~a~~~~~~~~~-------~~---~~~~~~~~l~~~la~~~~~~---~~i~~~~gt~al~~~ 87 (391)
T 3dr4_A 22 SDLPRISVAAP-RLDGNERDYVLECMDTTW-------IS---SVGRFIVEFEKAFADYCGVK---HAIACNNGTTALHLA 87 (391)
T ss_dssp ------CCCCC-CCCSSHHHHHHHHHHHTC-------CS---SCSHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHH
T ss_pred CCCceeccCCC-CCCHHHHHHHHHHHHcCC-------cc---CCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHH
Confidence 45566666655 455778888887775421 11 11355678999999999987 789999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
+.++ .+++||+|+++.++|++.. ..++..|++++.++++ +++.+|++++++.+++++++|++ +||||..
T Consensus 88 l~~~---~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~---~n~tG~~ 157 (391)
T 3dr4_A 88 LVAM---GIGPGDEVIVPSLTYIASA----NSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMP---VHLYGQI 157 (391)
T ss_dssp HHHH---TCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEECC---BCGGGCC
T ss_pred HHHc---CCCCcCEEEECCCchHHHH----HHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEEE---ECCCCCh
Confidence 9988 3689999999999999664 4455679999999998 45788999999999988888884 5789999
Q ss_pred ccHHHHHHHHHhcCcEEEEeccccCCcccCC--CCCCCCcEEEec--ccCCCCCCceeEEEEecc-ccccCCCccccCcc
Q 012718 225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVD--VQGLDADFLVAS--SHKMCGPTGIGFLFGKSD-LLSAMPPFLGGGEM 299 (458)
Q Consensus 225 ~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~--~~~~~~d~~~~s--~~K~~gp~g~G~l~~~~~-~~~~l~~~~~g~~~ 299 (458)
.|+++|.++|+++|+++|+|++|+.|....+ ...+ .|+++.| .+|++++..+|+++.+++ +.+.+.....++..
T Consensus 158 ~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~ 236 (391)
T 3dr4_A 158 CDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMD 236 (391)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCC
T ss_pred hhHHHHHHHHHHcCCEEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998776333 2222 3677777 459776633788877654 44444433222211
Q ss_pred eEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC--CCCCcC
Q 012718 300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP--KPSEHV 377 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~--~~~~~~ 377 (458)
.. ..+......+.. ....+.+++......+++++.++.+++.+++.+.|.++ ++++..+ ... .
T Consensus 237 ~~------~~~~~~~~g~~~------~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~--~ 301 (391)
T 3dr4_A 237 PN------RRYWFPIVGFNY------RMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALT--G 301 (391)
T ss_dssp TT------STTCCSSCCCBC------BCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTT--S
T ss_pred CC------Cccccccccccc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCC--C
Confidence 00 000000001111 12233344444444567889999999999999999988 7777655 221 1
Q ss_pred ccc-cEEEEEeC---CCChHHHHHHHhhhcCeEeccCC---CCChhhHhh-cC--------CCCeEEEeeCCCCCHHHHH
Q 012718 378 QRA-ALCSFNVE---NIHPTDIATLLDQQYGVATRSGH---HCAQPLHRY-LG--------VNASARASLHFYNTKEDVD 441 (458)
Q Consensus 378 ~~~-~~v~~~~~---~~~~~~~~~~l~~~~gi~~~~g~---~~~~~~~~~-~g--------~~~~lRis~~~~~t~~di~ 441 (458)
... .++++.++ +.+..++.+.|.++ ||.++++. +|.+..... .+ ....+|++++.++|++||+
T Consensus 302 ~~~~~~~~i~~~~~~~~~~~~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~ 380 (391)
T 3dr4_A 302 RHVFWMYTVRLGEGLSTTRDQVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADID 380 (391)
T ss_dssp CCCCSSEEEEECSSCSSCHHHHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred cceeEEEEEEECCccchhHHHHHHHHHHC-CCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHH
Confidence 122 35677776 45688999999998 99999875 333322110 00 0468999999999999999
Q ss_pred HHHHHHHHHH
Q 012718 442 EFIHALNETV 451 (458)
Q Consensus 442 ~l~~~l~~~~ 451 (458)
++++.|++++
T Consensus 381 ~~~~~l~~~l 390 (391)
T 3dr4_A 381 RVIAALDQVL 390 (391)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=247.07 Aligned_cols=325 Identities=16% Similarity=0.212 Sum_probs=227.2
Q ss_pred cHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-----CCC-CCCcEEEeCChhHHHHHHHHHcCCCC
Q 012718 80 PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-----NAS-DSGEIVFTKNATEAINLVAYSWGLSN 153 (458)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----g~~-~~~~v~~t~g~t~a~~~~~~~l~~~~ 153 (458)
|..+.+++.+.+...... ...++.......++|+++++++ |.+ ..++|++|+|+++++.+++.++
T Consensus 103 P~~~~~~~~~~l~~~~~~-----~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l---- 173 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGN-----SLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL---- 173 (498)
T ss_dssp CHHHHHHHHHHHHHC---------------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHhccCC-----CCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH----
Confidence 555666666666543210 0111122233345666666665 343 2249999999999999999988
Q ss_pred CCCCC----EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcC-----CceEEEEecccCcCc
Q 012718 154 LKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSR-----KTKLVVIHHISNMLA 222 (458)
Q Consensus 154 ~~~g~----~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~-----~~~~v~~~~~~n~tG 222 (458)
.++|| .|+++.|+|+ .+...++..|++++.++++++ +.+|+++|++.+++ ++++|++++++||||
T Consensus 174 ~~~gd~~~d~Vlv~~p~y~----~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG 249 (498)
T 3ihj_A 174 VSGGGKSRTGVMIPIPQYP----LYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTG 249 (498)
T ss_dssp CCCCGGGSEEEEEEESCCT----HHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTC
T ss_pred cCCCCCCCCEEEEeCCCch----hHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCC
Confidence 56664 9999999999 445566677999999998854 57899999999976 589999999999999
Q ss_pred cccc---HHHHHHHHHhcCcEEEEeccccCCccc-----CCCCC----C-------CCcEEEecccCCC-CCCc--eeEE
Q 012718 223 SILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----VDVQG----L-------DADFLVASSHKMC-GPTG--IGFL 280 (458)
Q Consensus 223 ~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-----~~~~~----~-------~~d~~~~s~~K~~-gp~g--~G~l 280 (458)
.+++ +++|+++|+++|+++|+|++|+..... ..+.. . ...+++.|+||.+ |.+| +||+
T Consensus 250 ~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~ 329 (498)
T 3ihj_A 250 QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYM 329 (498)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEE
T ss_pred CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEE
Confidence 9998 667999999999999999999854321 11111 0 1236788999977 6566 8999
Q ss_pred EE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH-----------HHHHhCHHHHH
Q 012718 281 FG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID-----------YLSTIGMQKIH 346 (458)
Q Consensus 281 ~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~-----------~~~~~g~~~~~ 346 (458)
++ ++++++.+..... ...+++.....++..+++ ++.+ ..+++
T Consensus 330 ~~~~~~~~l~~~l~~~~~----------------------~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~--~~~~~ 385 (498)
T 3ihj_A 330 EVINLHPEIKGQLVKLLS----------------------VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSRE--KESVL 385 (498)
T ss_dssp EEESCCHHHHHHHHHHHH----------------------HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHH--HHHHH
T ss_pred EEecCCHHHHHHHHHHHh----------------------ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHH--HHHHH
Confidence 84 6666555442211 012455555666655552 2222 46778
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeC------------CCChHHH--HHHHhhhcCeEeccCC
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVE------------NIHPTDI--ATLLDQQYGVATRSGH 411 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~------------~~~~~~~--~~~l~~~~gi~~~~g~ 411 (458)
++++++++++.+.|+++|++++..+. ++ ++++++. +.+.+++ .+.|.+. ||.+.+|.
T Consensus 386 ~~l~~~~~~l~~~L~~~~g~~~~~p~-------gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~-gI~v~pG~ 457 (498)
T 3ihj_A 386 GNLAKKAKLTEDLFNQVPGIHCNPLQ-------GAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEET-GICVVPGS 457 (498)
T ss_dssp HHHHHHHHHHHHHHHTSTTEECCCCC-------BSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHH-CBCCEEGG
T ss_pred HHHHHHHHHHHHHHhcCCCcEecCCC-------eEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHC-CEEEEeCc
Confidence 88999999999999999999887554 44 5555553 3344453 4455566 99999998
Q ss_pred CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 412 ~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.|..+ ..++++|+++. .+++++++++++|.++++++.+
T Consensus 458 ~f~~~-----~~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 458 GFGQR-----EGTYHFRMTIL--PPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp GTCCC-----TTCCBEEEECC--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCC-----CCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 66432 12579999996 7999999999999999987754
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=248.94 Aligned_cols=303 Identities=15% Similarity=0.143 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH--HHHHHHcCCCCCC--C----------CCEEEEcCCCCccchHHHHH
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAI--NLVAYSWGLSNLK--S----------GDEVILTVAEHHSAIVPWQL 176 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~--~~~~~~l~~~~~~--~----------g~~vl~~~~~~~s~~~~~~~ 176 (458)
....++|++++++++++++ +|++|+|+++++ ++++.++ ++ + ||+|++++|+|++ +..
T Consensus 78 ~g~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~~~~~~~~l----~~~~~g~~~~~~~~~gd~V~v~~p~y~~----~~~ 148 (427)
T 3ppl_A 78 DGIVDIRQIWADLLGVPVE-QVLAGDASSLNIMFDVISWSY----IFGNNDSVQPWSKEETVKWICPVPGYDR----HFS 148 (427)
T ss_dssp SCCHHHHHHHHHHHTSCGG-GEEECSSCHHHHHHHHHHHHH----HHCCTTCSSCGGGSSCCEEEEEESCCHH----HHH
T ss_pred CCcHHHHHHHHHHhCCCcc-eEEEeCCcHHHHHHHHHHHHH----hccCCcccccccCCCCCEEEEcCCCcHH----HHH
Confidence 4456899999999999876 999999999999 5777776 33 4 8999999999994 456
Q ss_pred HHHHcCCeEEEEeCCCCCCCCHHHHHHhhc-CCceEEEEe-cccCcCcccccHH---HHHHHH-HhcCcEEEEeccccCC
Q 012718 177 VAQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIH-HISNMLASILPIE---EIVHWS-HDVGAKVLVDACQSVP 250 (458)
Q Consensus 177 ~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~-~~~n~tG~~~~l~---~i~~l~-~~~~~~vivD~a~~~g 250 (458)
.++..|++++.+|+++++ +|++.|++.++ +++++|++. +++||||.++|.+ +|+++| +++|++||+|++|+..
T Consensus 149 ~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~ 227 (427)
T 3ppl_A 149 ITERFGFEMISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVH 227 (427)
T ss_dssp HHHHTTCEEEEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTC
T ss_pred HHHHcCCEEEEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCccc
Confidence 667789999999998776 89999999995 578888754 8999999999966 888999 9999999999999842
Q ss_pred cc------cCCC-------CCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCc
Q 012718 251 HM------VVDV-------QGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316 (458)
Q Consensus 251 ~~------~~~~-------~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (458)
.. ++++ +..+.+++++|+||.++ +-++||++.++++++.+.......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~------------------- 288 (427)
T 3ppl_A 228 TLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIR------------------- 288 (427)
T ss_dssp BSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHH-------------------
T ss_pred ccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcc-------------------
Confidence 21 1121 13457899999999743 334999999988776654332110
Q ss_pred cCCCCCCHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHH----hcCCCEEEeCCCCCCcCccccEEEEEeCC
Q 012718 317 FEAGTPAIGEAIGLGAAIDY---LSTIGMQKIHAYEMELAKYLYENL----LSIPNIRIYGPKPSEHVQRAALCSFNVEN 389 (458)
Q Consensus 317 ~~~gt~~~~~~~~l~~al~~---~~~~g~~~~~~~~~~l~~~l~~~L----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 389 (458)
..+++.....++..+++. +.. .+.+.++.+++.++.+.+.| ..++++++..+. .+.++++.+++
T Consensus 289 --~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~------~g~~~~~~~~~ 359 (427)
T 3ppl_A 289 --GIGPNKVNQLAHARYFGDAEGVRA-VMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA------GGYFISLDVVP 359 (427)
T ss_dssp --CSCCCHHHHHHHHHHHCSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS------BSSCEEEECST
T ss_pred --cCCCCHHHHHHHHHHHhChhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC------ccEEEEEECCc
Confidence 123344444444444432 111 14445555555555555554 444456665543 26689999986
Q ss_pred CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 390 IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 390 ~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.+..++.+.|.++ ||.+++|+.|.... .-..++++|||++. .+++++++++++|.++++++.
T Consensus 360 ~~~~~~~~~l~~~-gv~v~~~g~~~~~~--~~~~~~~~Ris~~~-~~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 360 GTASRVAELAKEA-GIALTGAGSSYPLR--QDPENKNLRLAPSL-PPVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp TCHHHHHHHHHHT-TEECCCTTTTSGGG--CCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHC-CCEEecCcCcCCCC--CCCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 6778898888888 99999944332210 00126899999975 489999999999999998764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=247.16 Aligned_cols=300 Identities=17% Similarity=0.137 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.+|+++|.+ ++++++|||+|+++++. + +++||+|+++.++|++....+...++..|++++.++
T Consensus 54 ~~~~~~lr~~la~~~g~~---~~i~~~sGt~a~~~al~-~----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 125 (393)
T 1n8p_A 54 NPNRENLERAVAALENAQ---YGLAFSSGSATTATILQ-S----LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp CHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHH-T----SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred ChhHHHHHHHHHHHhCCC---cEEEECChHHHHHHHHH-H----cCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence 456778999999999987 56666667999999999 7 678999999999999776555555667799999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc----CcEEEEeccccCCcccCCCCCCCCcEEE
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV----GAKVLVDACQSVPHMVVDVQGLDADFLV 265 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~----~~~vivD~a~~~g~~~~~~~~~~~d~~~ 265 (458)
.+ | +++++++++++++|++++++||||.+.|+++|.++|+++ |+++|+|++|+.+... +...+++|+++
T Consensus 126 ~~-----d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~~~~~di~~ 198 (393)
T 1n8p_A 126 DL-----L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLNFGADIVV 198 (393)
T ss_dssp SH-----H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGGGTCSEEE
T ss_pred CC-----h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHHHcCCeEEE
Confidence 76 7 899999998999999999999999999999999999999 9999999999976542 34455799999
Q ss_pred ecccCCCCCCc--e-eEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 266 ASSHKMCGPTG--I-GFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 266 ~s~~K~~gp~g--~-G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
.|+||++|+.| + |+++++ +++++.+......+ .++.+.....++..+++.
T Consensus 199 ~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~---------------------g~~~~~~~~~~~~~~l~~----- 252 (393)
T 1n8p_A 199 HSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAI---------------------GAIPSPFDAWLTHRGLKT----- 252 (393)
T ss_dssp EETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHH---------------------CCCCCHHHHHHHHHHHTT-----
T ss_pred EECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhc---------------------CCCCCHHHHHHHHhccch-----
Confidence 99999999888 6 999986 56655554321100 123333333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-EE-EeCCCC-CCc---------Cc-c-ccEEEEEeCCC--ChHHHHHHHhhhcCe
Q 012718 342 MQKIHAYEMELAKYLYENLLSIPN-IR-IYGPKP-SEH---------VQ-R-AALCSFNVENI--HPTDIATLLDQQYGV 405 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~~~-~~-~~~~~~-~~~---------~~-~-~~~v~~~~~~~--~~~~~~~~l~~~~gi 405 (458)
+....++..++++.+.+.|.+.+. +. +..+.- ..+ .. . +++++|.+++. +...+...+... ++
T Consensus 253 ~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~-~~ 331 (393)
T 1n8p_A 253 LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLF-TL 331 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSS-EE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcc-eE
Confidence 344445556677778888887765 54 322211 000 11 3 66999999863 223344444333 56
Q ss_pred EeccCCCCCh------hhH--------hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 406 ATRSGHHCAQ------PLH--------RYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 406 ~~~~g~~~~~------~~~--------~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.++.|+.|+. +.+ ..+|. ++.+|+|++.++++++|+.+.++|+++.
T Consensus 332 ~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 332 AESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp CSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 6666765542 222 23444 5899999999999999999999988753
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-28 Score=239.06 Aligned_cols=355 Identities=15% Similarity=0.134 Sum_probs=241.8
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
.++++.+.+++.+.+...... ...... +..+..+++++.+++++|.+ ++++++|||+|+.+++.++. +++
T Consensus 12 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~--g~~~l~~~l~~~la~~~g~~---~~i~~~~gt~al~~~~~~~~---~~~ 81 (418)
T 2c81_A 12 PQHSDRTRRKIEEVFQSNRWA--ISGYWT--GEESMERKFAKAFADFNGVP---YCVPTTSGSTALMLALEALG---IGE 81 (418)
T ss_dssp SCCCHHHHHHHHHHHHHTCCS--TTSBCC--SSCCHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTT---CCT
T ss_pred CCCCHHHHHHHHHHHhcCCcc--ccCccc--CCHHHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHcC---CCC
Confidence 456899999999988763211 011111 12345678999999999987 67888889999999999883 678
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHH
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSH 235 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~ 235 (458)
||+|+++.++|++.. ..++..|++++.+++++ ++.+|++++++.+++++++|+++ |+||...++++|.++|+
T Consensus 82 gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~ 154 (418)
T 2c81_A 82 GDEVIVPSLTWIATA----TAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQ 154 (418)
T ss_dssp TCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHH
T ss_pred cCEEEECCCccHhHH----HHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHH
Confidence 999999999999664 34456799999999986 67899999999999889988864 57999999999999999
Q ss_pred hcCcEEEEeccccCCcc-cC-CCCCCCCcEEEecc--cCCCCCCceeEEEEe-ccccccCCCccccCcceEeeecCCCCC
Q 012718 236 DVGAKVLVDACQSVPHM-VV-DVQGLDADFLVASS--HKMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTF 310 (458)
Q Consensus 236 ~~~~~vivD~a~~~g~~-~~-~~~~~~~d~~~~s~--~K~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~ 310 (458)
++|+++|+|++|+.+.. .. .+... .|+++.|+ ||++|+..+|+++.+ +++++.+.+....+.......
T Consensus 155 ~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~------ 227 (418)
T 2c81_A 155 EHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDS------ 227 (418)
T ss_dssp HTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCG------
T ss_pred HCCCEEEEECcccccCccCCEecccc-cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccccccc------
Confidence 99999999999998863 11 12222 36777766 998887348888885 566655554333222111000
Q ss_pred CCCCCccC--CCCCCHHH----HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEE
Q 012718 311 ADPPSRFE--AGTPAIGE----AIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALC 383 (458)
Q Consensus 311 ~~~~~~~~--~gt~~~~~----~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v 383 (458)
......+. .+++...+ +..+.+++.......++++.++.+++++++.+.|.+++++++..++... .... .++
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-~~~~~~~~ 306 (418)
T 2c81_A 228 SELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQV-SRQTYYGY 306 (418)
T ss_dssp GGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTE-EECCCSEE
T ss_pred cccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC-cccccEEE
Confidence 00001111 11111000 0111122222222346788888899999999999998899987443100 0112 255
Q ss_pred EEEeC-----CCChHHHHHHHhhhcCeE---eccCCCCCh--hhHhhc------------------CC--------CCeE
Q 012718 384 SFNVE-----NIHPTDIATLLDQQYGVA---TRSGHHCAQ--PLHRYL------------------GV--------NASA 427 (458)
Q Consensus 384 ~~~~~-----~~~~~~~~~~l~~~~gi~---~~~g~~~~~--~~~~~~------------------g~--------~~~l 427 (458)
.+.++ +.+..++.+.|.+++||. ++++..+.. +.+..+ +. .+.+
T Consensus 307 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 386 (418)
T 2c81_A 307 VFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSI 386 (418)
T ss_dssp EEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEE
T ss_pred EEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEE
Confidence 57776 567889999998777999 887753311 000001 00 2589
Q ss_pred EEeeCCCC-CHHHHHHHHHHHHHHHHhhhc
Q 012718 428 RASLHFYN-TKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 428 Ris~~~~~-t~~di~~l~~~l~~~~~~~~~ 456 (458)
|++++.++ |++||+++++.|+++++++..
T Consensus 387 rl~~~~~~gt~edi~~~~~~l~~~~~~~~~ 416 (418)
T 2c81_A 387 VIHHAILLAEPSHLSLLVDAVAELARKFCV 416 (418)
T ss_dssp EEEGGGGGSCHHHHHHHHHHHHHHHHTTC-
T ss_pred EecCCccCCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999 999999999999999887643
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=238.56 Aligned_cols=301 Identities=19% Similarity=0.263 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.++++++.+ +.+++ ++|++|+..++.++ +++||+|+++.++|++....+...++..|++++.++
T Consensus 51 ~~~~~~l~~~la~~~~~~--~~i~~-~sGt~a~~~~~~~~----~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGA--GAVLT-NTGMSAIHLVTTVF----LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123 (386)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEE-SSHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred CccHHHHHHHHHHHhCCC--cEEEe-CCHHHHHHHHHHHH----hCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeC
Confidence 345678999999999987 25555 55599999999988 678999999999999877667666777899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.+ |++++++.+++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.....+ ..++|+++.|+|
T Consensus 124 ~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~s 197 (386)
T 1cs1_A 124 QG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-ALGADLVLHSCT 197 (386)
T ss_dssp TT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETT
T ss_pred CC-----CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-ccCceEEEEcCc
Confidence 75 899999999989999999999999999999999999999999999999999977653333 467999999999
Q ss_pred CCCC-CCc-e-eEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMCG-PTG-I-GFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~g-p~g-~-G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|+++ |.+ + |++++++ ++++.+.+...++ .++.+....+++..+++. ++..
T Consensus 198 K~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~---------------------~~~~~~~~~~~~~~~l~~-----~~~~ 251 (386)
T 1cs1_A 198 KYLNGHSDVVAGVVIAKDPDVVTELAWWANNI---------------------GVTGGAFDSYLLLRGLRT-----LVPR 251 (386)
T ss_dssp TTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH---------------------TCBCCHHHHHHHHHHHTT-----HHHH
T ss_pred ccccCCCCceeEEEEeCcHHHHHHHHHHHHhc---------------------CCCCCHHHHHHHHhcccH-----HHHH
Confidence 9766 555 2 9999987 6766665433221 123444443333333332 3445
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEe-CCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhhcCeEecc---C-
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIY-GPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQYGVATRS---G- 410 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~---g- 410 (458)
.++..++.+.+.+.|++++.+.-. .+.-.. ....++++.|.+++. ..++.+.|.++ ||.++. |
T Consensus 252 ~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-gi~~~~~~~g~ 329 (386)
T 1cs1_A 252 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGL-SLFTLAESLGG 329 (386)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTC-SSSEEBSCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HHHHHHHHHhC-CcceEcccCCC
Confidence 566777788888888887665432 221000 013477999998764 66788888877 998873 4
Q ss_pred -----CCCC------hhh--HhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 411 -----HHCA------QPL--HRYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 411 -----~~~~------~~~--~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
++|. .+. ...+|. ++++|+|++..+++++++++.++|+++.
T Consensus 330 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 330 VESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp SSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 2222 111 123343 5899999999888888888888887653
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-27 Score=235.86 Aligned_cols=338 Identities=17% Similarity=0.150 Sum_probs=236.8
Q ss_pred ecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 71 LDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 71 l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
|..+... +.|+.+.+++.+.+... . +.. .....+++++.+++++|.+ ++++|+|+|+|+.+++.++
T Consensus 21 l~~~~p~~~~p~~~~~a~~~~~~~~-~------y~~---~~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~l~~l 87 (424)
T 2po3_A 21 LLVGRPNRIDRARLYERLDRALDSQ-W------LSN---GGPLVREFEERVAGLAGVR---HAVATCNATAGLQLLAHAA 87 (424)
T ss_dssp EETTCCCCCCHHHHHHHHHHHHHHT-C------CSS---SCHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHH
T ss_pred ccccCCCCCChHHHHHHHHHHHhcC-C------ccc---CCHHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHc
Confidence 4444443 34678888888887641 1 110 1345678999999999985 8999999999999999988
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
. +||+|++++++|++.. ..++..|++++.+++++ ++.+|++++++.+++++++|++++ +||...+++
T Consensus 88 ~-----~gd~Vlv~~~~~~~~~----~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~ 155 (424)
T 2po3_A 88 G-----LTGEVIMPSMTFAATP----HALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAAD 155 (424)
T ss_dssp T-----CCSEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHH
T ss_pred C-----CCCEEEECCCccHHHH----HHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHH
Confidence 2 6799999999999654 44566799999999986 577899999999988899988854 799999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCC---CCCCCCcEEEeccc--CCCCCCceeEEEEe-ccccccCCCccccCcceEe
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVD---VQGLDADFLVASSH--KMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISD 302 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~---~~~~~~d~~~~s~~--K~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~ 302 (458)
+|.++|+++|+++|+|++|+.|.. .+ +... .|++++|+| |.+++..+|+++.+ +++++.+......+...
T Consensus 156 ~i~~la~~~~~~li~Dea~~~g~~-~~~~~~~~~-~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~-- 231 (424)
T 2po3_A 156 QLRKVADEHGLRLYFDAAHALGCA-VDGRPAGSL-GDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDL-- 231 (424)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCE-ETTEETTSS-SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTC--
T ss_pred HHHHHHHHcCCEEEEECccccCCe-ECCeecccc-cCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccc--
Confidence 999999999999999999997654 22 2222 589999998 77776458999998 56666554332211100
Q ss_pred eecCCCCCCCCCCccCCCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcc-c
Q 012718 303 VFLDHSTFADPPSRFEAGTP-AIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQR-A 380 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~-~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~ 380 (458)
.+.. . ..|.. ...+ .+...++..+. +++++.++.+++.+++.+.|.+++++++..++.. ... .
T Consensus 232 ------~~~~--~--~~g~~~~~~~-~~aa~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--~~~~~ 296 (424)
T 2po3_A 232 ------PGGS--P--AGGTNAKMSE-AAAAMGLTSLD--AFPEVIDRNRRNHAAYREHLADLPGVLVADHDRH--GLNNH 296 (424)
T ss_dssp ------TTCC--T--TCCCBCCCCH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGG--SCCCC
T ss_pred ------cccc--c--ccCcCCCcCH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCC--Ccccc
Confidence 0000 0 01111 1111 12222233232 2677888889999999999998889988763211 011 1
Q ss_pred cEEEEEeC----CCChHHHHHHHhhhcCeEeccCCCCChhhH-----hhcC---C-------CCeEEEeeCCCCCHHHHH
Q 012718 381 ALCSFNVE----NIHPTDIATLLDQQYGVATRSGHHCAQPLH-----RYLG---V-------NASARASLHFYNTKEDVD 441 (458)
Q Consensus 381 ~~v~~~~~----~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~-----~~~g---~-------~~~lRis~~~~~t~~di~ 441 (458)
.++++.++ +.+..++.+.|.++ ||.+++. |..+.+ ..+| . ...+|++++.+++++|++
T Consensus 297 ~~~~i~~~~~~~~~~~~~l~~~L~~~-gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~ 373 (424)
T 2po3_A 297 QYVIVEIDEATTGIHRDLVMEVLKAE-GVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIR 373 (424)
T ss_dssp CCEEEEECHHHHSSCHHHHHHHHHHT-TEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHH
T ss_pred EEEEEEECCccchhhHHHHHHHHHHC-CCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHH
Confidence 45667776 46788899999888 9999762 221111 0111 0 234888888889999999
Q ss_pred HHHHHHHHHHHhhh
Q 012718 442 EFIHALNETVSFFN 455 (458)
Q Consensus 442 ~l~~~l~~~~~~~~ 455 (458)
++++.|.+++++..
T Consensus 374 ~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 374 RVADLLRLCATRGR 387 (424)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhH
Confidence 99999999987654
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-29 Score=243.35 Aligned_cols=302 Identities=13% Similarity=0.134 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHH--HHHHHHcCCCCCCC------------CCEEEEcCCCCccchHHHHHH
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAI--NLVAYSWGLSNLKS------------GDEVILTVAEHHSAIVPWQLV 177 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~--~~~~~~l~~~~~~~------------g~~vl~~~~~~~s~~~~~~~~ 177 (458)
...++|++++++++++++ +|++|+|+++++ .+++.++. ++ +++|++++|+|++ +...
T Consensus 77 G~~~lr~~ia~~~~~~~~-~i~~t~G~~~al~l~~~~~~l~----~~~~~g~~~~~~~d~~~Vl~~~p~y~~----~~~~ 147 (422)
T 3d6k_A 77 GIADIRELWAEALGLPAD-LVVAQDGSSLNIMFDLISWSYT----WGNNDSSRPWSAEEKVKWLCPVPGYDR----HFTI 147 (422)
T ss_dssp CCHHHHHHHHHHHTCCGG-GEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHH----HHHH
T ss_pred CCHHHHHHHHHHhCCChh-HEEEecchHHHHHHHHHHHHhc----CcccccccccccCCCCEEEEeCCccHH----HHHH
Confidence 356899999999998876 999999999997 67767662 23 4579999999994 4556
Q ss_pred HHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEE-EecccCcCcccccHH---HHHHHHH-hcCcEEEEeccccCCc
Q 012718 178 AQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVV-IHHISNMLASILPIE---EIVHWSH-DVGAKVLVDACQSVPH 251 (458)
Q Consensus 178 a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~-~~~~~n~tG~~~~l~---~i~~l~~-~~~~~vivD~a~~~g~ 251 (458)
++..|++++.+++++++ +|++++++.+++ ++++|+ +++++||||.++|.+ +|+++|+ ++|+++|+|++|+.+.
T Consensus 148 ~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~ 226 (422)
T 3d6k_A 148 TEHFGFEMINVPMTDEG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHT 226 (422)
T ss_dssp HHHHTCEEEEEEEETTE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred HHHcCCEEEecCCCCCC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccc
Confidence 67779999999988766 899999999986 788888 799999999999965 8888888 9999999999997311
Q ss_pred c-----c-CCC-------CCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCc
Q 012718 252 M-----V-VDV-------QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316 (458)
Q Consensus 252 ~-----~-~~~-------~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (458)
+ + ..+ ...+.++++.|+||..+| | +||+++++++++.+......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-GlriG~~~~~~~l~~~l~~~~~~-------------------- 285 (422)
T 3d6k_A 227 LSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHA-GSGVSFFASSKENIEWYASHANV-------------------- 285 (422)
T ss_dssp SSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCT-TSSCEEEECCHHHHHHHHHHHHH--------------------
T ss_pred cCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCc-ccceEEEEeCHHHHHHHHHHHHh--------------------
Confidence 1 0 111 234578999999997333 5 99999998877666533211
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHh----cCCCEEEeCCCCCCcCccccEEEEEeCCC
Q 012718 317 FEAGTPAIGEAIGLGAAIDYLS--TIGMQKIHAYEMELAKYLYENLL----SIPNIRIYGPKPSEHVQRAALCSFNVENI 390 (458)
Q Consensus 317 ~~~gt~~~~~~~~l~~al~~~~--~~g~~~~~~~~~~l~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 390 (458)
+ ..+.+.....++..+++... ...+++.++++++.++++.+.|. .++++++..+. .+.++++.+++.
T Consensus 286 ~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~------~g~~~~~~~~~~ 358 (422)
T 3d6k_A 286 R-GIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPT------GGYFISVDVVPG 358 (422)
T ss_dssp H-CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCS------BSSCEEEEESTT
T ss_pred h-cCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCC------cceEEEEECCCC
Confidence 1 12345555555555554311 01145556666666666666654 34346765543 156899999855
Q ss_pred ChHHHHHHHhhhcCeEecc-CCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 391 HPTDIATLLDQQYGVATRS-GHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 391 ~~~~~~~~l~~~~gi~~~~-g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+..++.+.+.++ ||.+++ |.+|.... .+.++++|||++. ++++++++++++|+++++++..
T Consensus 359 ~~~~~~~~l~~~-gV~v~~~g~~f~~~~---~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 359 TASRVVELAKEA-GIALTGAGSSFPLHN---DPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp CHHHHHHHHHHT-TEECCCTTTTSGGGC---CTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CeEEEcCccccCCCC---CCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 567788888877 999999 45443110 0125799999997 8999999999999999887643
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-28 Score=237.06 Aligned_cols=335 Identities=14% Similarity=0.148 Sum_probs=237.9
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
.++++.+++.+.+......+ .....+++++.+++++|.+ ++++++|+|+|+.+++.++. +++||
T Consensus 10 ~~~~v~~a~~~~~~~~~~~~----------~g~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~l~---~~~gd 73 (394)
T 1o69_A 10 MGGNELKYIEEVFKSNYIAP----------LGEFVNRFEQSVKDYSKSE---NALALNSATAALHLALRVAG---VKQDD 73 (394)
T ss_dssp --CCHHHHHHHHHHHTTTSC----------TTHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHTT---CCTTC
T ss_pred CCHHHHHHHHHHHHcCCccC----------CChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHcC---CCCCC
Confidence 45667788887776421110 1245678999999999984 89999999999999999873 67899
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEecccCcCcccccHHHHHHHHH
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNMLASILPIEEIVHWSH 235 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~l~~i~~l~~ 235 (458)
+|+++.++|++....+ +..|++++.+++++++.+|++++++.+++ ++++|++++ ++|...++++|.++|+
T Consensus 74 ~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~ 146 (394)
T 1o69_A 74 IVLASSFTFIASVAPI----CYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICK 146 (394)
T ss_dssp EEEEESSSCGGGTHHH----HHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHH
T ss_pred EEEECCCccHHHHHHH----HHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHH
Confidence 9999999999876544 44699999999987788999999999876 789999886 6999999999999999
Q ss_pred hcCcEEEEeccccCCcccCCC--CC-CCCcEEEecccCCCCCCceeEEEEe-ccccccCCCccccCcceEeeecCCCCCC
Q 012718 236 DVGAKVLVDACQSVPHMVVDV--QG-LDADFLVASSHKMCGPTGIGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFA 311 (458)
Q Consensus 236 ~~~~~vivD~a~~~g~~~~~~--~~-~~~d~~~~s~~K~~gp~g~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 311 (458)
++|+++|+|++|+.|....+. .. .++|+.++|.+|.+++.++|+++++ +++++.+......+.. ....+.
T Consensus 147 ~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~------~~~~~~ 220 (394)
T 1o69_A 147 ENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARE------NCLHYE 220 (394)
T ss_dssp HTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCC------SSSSCC
T ss_pred HcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccc------cCcccc
Confidence 999999999999976553221 11 2467778788998888789999996 5666655433221110 000111
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEEEEEeCC-
Q 012718 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALCSFNVEN- 389 (458)
Q Consensus 312 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~- 389 (458)
....+++.++++....+++.. +++ +++..++.+++++++.+.|.++ +++..+... .... .++++.++.
T Consensus 221 ~~~~g~~~~~~~~~aa~~l~~-l~~-----l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~--~~~~~~~~~i~~~~~ 290 (394)
T 1o69_A 221 HLDYGYNYRLSNVLGAIGVAQ-MEV-----LEQRVLKKREIYEWYKEFLGEY--FSFLDELEN--SRSNRWLSTALINFD 290 (394)
T ss_dssp CSSCCCBCBCCHHHHHHHHHH-HTT-----HHHHHHHHHHHHHHHHHHHTTT--EECCCCCTT--EECCCSSEEEEESCC
T ss_pred ccccCcccCcCHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHhccc--ccccCCCCC--CcceeEEEEEEecch
Confidence 223455556776655555432 333 4557788899999999999886 665543211 0112 257787763
Q ss_pred ---------------------CChHHHHHHHhhhcCeEeccCCCCCh--hhHhhc---CC-------CCeEEEeeCCCCC
Q 012718 390 ---------------------IHPTDIATLLDQQYGVATRSGHHCAQ--PLHRYL---GV-------NASARASLHFYNT 436 (458)
Q Consensus 390 ---------------------~~~~~~~~~l~~~~gi~~~~g~~~~~--~~~~~~---g~-------~~~lRis~~~~~t 436 (458)
.+..++.+.|.++ ||.++++..|.. +....+ +. ...+|+..+.++|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 369 (394)
T 1o69_A 291 KNELNACQKDINISQKNITLHPKISKLIEDLKNK-QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMS 369 (394)
T ss_dssp GGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHT-TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCC
T ss_pred hhccccccccccccccccccccCHHHHHHHHHHc-CCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCC
Confidence 2567899999888 999998854421 211111 00 1457777789999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012718 437 KEDVDEFIHALNETVSF 453 (458)
Q Consensus 437 ~~di~~l~~~l~~~~~~ 453 (458)
++|++++++.|+++++.
T Consensus 370 ~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 370 KDDVYEISKLILKSIKA 386 (394)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998764
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-27 Score=232.57 Aligned_cols=338 Identities=16% Similarity=0.215 Sum_probs=236.2
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC---
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS--- 152 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~--- 152 (458)
...+++.+.+++.+.+.... +. .....+++++.+++++|.+ ++++++|||+|++.++.++...
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~~l~~~la~~~~~~---~~i~~~sGt~a~~~al~~~~~~~~~ 75 (390)
T 3b8x_A 10 SSTWDDLEYKAIQSVLDSKM-------FT----MGEYVKQYETQFAKTFGSK---YAVMVSSGSTANLLMIAALFFTKKP 75 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHTC-------CS----SCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTTSSSSC
T ss_pred CCCCCHHHHHHHHHHHHcCC-------CC----CChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHHHhhhhc
Confidence 34678889999988886521 11 1345678999999999986 6888999999999999987210
Q ss_pred CCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHH
Q 012718 153 NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
.+++||+|+++.++|++...+ ++..|++++.++++++ +.+|++++++.+++++++|++++ ++|...|+++|.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~ 148 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYYP----LQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEIN 148 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHH
T ss_pred CCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHH
Confidence 167899999999999976544 4457999999999876 88999999999998999998874 578889999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCCCCCCC--cEEEecc---cCCCCCCceeEEEEec-cccccCCCccccC--cc---e
Q 012718 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDA--DFLVASS---HKMCGPTGIGFLFGKS-DLLSAMPPFLGGG--EM---I 300 (458)
Q Consensus 232 ~l~~~~~~~vivD~a~~~g~~~~~~~~~~~--d~~~~s~---~K~~gp~g~G~l~~~~-~~~~~l~~~~~g~--~~---~ 300 (458)
++|+++|+++|+|++|+.|..+ +....+. |+.++|+ +|+.++.| |+++.++ ++.+.+.+...++ .. .
T Consensus 149 ~l~~~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~ 226 (390)
T 3b8x_A 149 KIIGGRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKK 226 (390)
T ss_dssp HHHTTSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSE
T ss_pred HHHHHcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCcccccc
Confidence 9999999999999999988764 4444444 6655543 34544555 8999887 4544444332222 10 0
Q ss_pred -----EeeecC-CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 301 -----SDVFLD-HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 301 -----~~~~~~-~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
...... ...+.-...++..++++....+++.. ++. ++++.++.+++++++.+.|++++++++..+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l~~-----l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~- 299 (390)
T 3b8x_A 227 NKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-LKK-----LPRFISVRRKNAEYFLDKFKDHPYLDVQQETG- 299 (390)
T ss_dssp ETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHTTCSSEEECCCCS-
T ss_pred ccccccccccccccccceeccccccCcCHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHhcCCCCcccCCCCC-
Confidence 000000 00000001123334555555555432 332 46788888999999999999988998765431
Q ss_pred CcCcccc-EEEEEeC---CCChHHHHHHHhhhcCeEecc---CCCCCh-hhHhhc-----CC--------CCeEEEeeCC
Q 012718 375 EHVQRAA-LCSFNVE---NIHPTDIATLLDQQYGVATRS---GHHCAQ-PLHRYL-----GV--------NASARASLHF 433 (458)
Q Consensus 375 ~~~~~~~-~v~~~~~---~~~~~~~~~~l~~~~gi~~~~---g~~~~~-~~~~~~-----g~--------~~~lRis~~~ 433 (458)
.... .+++.++ +.+..++.+.|.++ ||.+++ ++.|.. +....+ +. .+.+|++++.
T Consensus 300 ---~~~~~~~~i~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 375 (390)
T 3b8x_A 300 ---ESSWFGFSFIIKKDSGVIRKQLVENLNSA-GIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQ 375 (390)
T ss_dssp ---BCCCCEEEEEECTTSCCCHHHHHHHHHHT-TBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCS
T ss_pred ---CcccEEEEEEecCcCcccHHHHHHHHHHC-CCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCC
Confidence 1122 3556666 45788999999988 999986 555655 543210 00 2579999999
Q ss_pred CCCHHHHHHHHHHH
Q 012718 434 YNTKEDVDEFIHAL 447 (458)
Q Consensus 434 ~~t~~di~~l~~~l 447 (458)
++|++||+++++.|
T Consensus 376 ~~t~~di~~i~~~l 389 (390)
T 3b8x_A 376 IELFDEIDYLREVL 389 (390)
T ss_dssp SCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999876
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=243.75 Aligned_cols=300 Identities=18% Similarity=0.186 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+++++.+++++|.+ +.++++ +|++|+..++. + +++||+|+++++.|+++...+...++..|++++.++.
T Consensus 67 p~~~~l~~~la~~~g~~--~~i~~~-sG~~ai~~~~~-l----~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 138 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK--YCLAFA-SGLAATVTITH-L----LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDC 138 (403)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEES-CHHHHHHHHHT-T----SCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred chHHHHHHHHHHHhCCC--cEEEEC-CHHHHHHHHHH-H----hCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECC
Confidence 44668999999999986 255555 55799999987 6 6899999999999998776676666778999999987
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcC-cEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG-AKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~-~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
+ |++++++.+++++++|++++++||||.+.|+++|+++|+++| +++|+|++|+.+.....+ ..++|+++.|+|
T Consensus 139 ~-----d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~-~~~~div~~S~s 212 (403)
T 3cog_A 139 S-----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL-ALGADISMYSAT 212 (403)
T ss_dssp T-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT-TTTCSEEEEETT
T ss_pred C-----CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc-ccCCeEEEEcCh
Confidence 6 899999999999999999999999999999999999999999 999999999987542223 257999999999
Q ss_pred CCCC-CCc--eeEEEEe-ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMCG-PTG--IGFLFGK-SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~g-p~g--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|++| +.| +|+++++ +++++.+.....+++ ++.+.....++..+++.+ +..
T Consensus 213 K~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g---------------------~~~~~~~~~~~~~~l~~l-----~~r 266 (403)
T 3cog_A 213 KYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG---------------------AVPSPIDCYLCNRGLKTL-----HVR 266 (403)
T ss_dssp TTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC---------------------CCCCHHHHHHHHHHHTTH-----HHH
T ss_pred hhccCCCCCeEEEEEECcHHHHHHHHHHHHhcC---------------------CCCCHHHHHHHHhhhhHH-----HHH
Confidence 9666 555 5999996 566666554332221 234444444444444433 223
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEe-CCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhhcCeEec---cCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIY-GPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQYGVATR---SGH 411 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~---~g~ 411 (458)
.++..+++..+.+.|++.+.++-. .+.-.. ....++++.|.+++. ..++.+.+.+. +|.++ .|.
T Consensus 267 ~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~l~~~-~i~~~~~s~G~ 344 (403)
T 3cog_A 267 MEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-LQHAEIFLKNL-KLFTLAESLGG 344 (403)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-HHHHHHHHHHC-SSSEECSCCSS
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-HHHHHHHHHhC-CcceEccCCCC
Confidence 344445555556666554333211 110000 012377999998753 35566666665 88543 232
Q ss_pred ------CCChhh--------HhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 412 ------HCAQPL--------HRYLGV-NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 412 ------~~~~~~--------~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
+|.... ...+|. ++.+|+|++..+++++|+.+.++|+++++
T Consensus 345 ~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 345 FESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp SSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred cceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 332211 123454 68999999998888888888888876654
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=236.03 Aligned_cols=311 Identities=13% Similarity=0.099 Sum_probs=224.3
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC--
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL-- 154 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~-- 154 (458)
+..++.+.+++.+.+..... .... + ..+..+++++.+++++|. +++++|+|+++|+..++.++.. .
T Consensus 55 g~~~~~v~~a~~~~~~~~~~-~~~~-~-----~~~~~~~l~~~la~~~g~---~~v~~~~gg~~a~~~al~~~~~--~~~ 122 (397)
T 2ord_A 55 GHSHPRLVEAIKDQAEKLIH-CSNL-F-----WNRPQMELAELLSKNTFG---GKVFFANTGTEANEAAIKIARK--YGK 122 (397)
T ss_dssp CBTCHHHHHHHHHHHHHCSC-CCTT-S-----EEHHHHHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHH--HHH
T ss_pred CCCCHHHHHHHHHHHHhccc-Cccc-c-----CCHHHHHHHHHHHHhcCC---CeEEEeCCHHHHHHHHHHHHHH--Hhh
Confidence 45688999999998876321 1111 1 235567889999999984 3899999999999999987620 1
Q ss_pred ---CCCCEEEEcCCCCccchHHHHHHHHHcCCe------------EEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 155 ---KSGDEVILTVAEHHSAIVPWQLVAQKTGAN------------LKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 155 ---~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
..++.|++.+++|++..... +...|.+ ++.++.+ |++++++.+++++++|++++++|
T Consensus 123 ~~~~~~~~vi~~~~~yh~~~~~~---~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~n 194 (397)
T 2ord_A 123 KKSEKKYRILSAHNSFHGRTLGS---LTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSEDVCAVFLEPIQG 194 (397)
T ss_dssp HHCTTCCEEEEEBTCCCCSSHHH---HHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTTEEEEEECSEEC
T ss_pred cCCCCCceEEEEcCCcCCCchhh---hhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhhcCeEEEEEecccC
Confidence 23578999999998765422 2334554 6677653 89999999998999999999999
Q ss_pred cCcc-ccc---HHHHHHHHHhcCcEEEEecccc-CCcc--cCCCC--CCCCcEEEecccCCCCC-CceeEEEEecccccc
Q 012718 220 MLAS-ILP---IEEIVHWSHDVGAKVLVDACQS-VPHM--VVDVQ--GLDADFLVASSHKMCGP-TGIGFLFGKSDLLSA 289 (458)
Q Consensus 220 ~tG~-~~~---l~~i~~l~~~~~~~vivD~a~~-~g~~--~~~~~--~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~ 289 (458)
|||. +++ +++|.++|+++|+++|+|++|+ ++.. +..+. ...+|++ |++|.+++ .++|+++++++++ .
T Consensus 195 ptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~ 271 (397)
T 2ord_A 195 ESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-V 271 (397)
T ss_dssp TTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-C
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-c
Confidence 9999 554 8899999999999999999997 2211 11111 1236866 66897763 3499999998876 5
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CC
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI----PN 365 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~----~~ 365 (458)
+..... ....+.+...+.++.++++.+.+ +++.++++++++++.+.|+++ +.
T Consensus 272 l~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 327 (397)
T 2ord_A 272 LEPGDH---------------------GTTFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDV 327 (397)
T ss_dssp CCTTSS---------------------CCSSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCCCc---------------------CCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 542111 01124566667777777776654 456778888888888888654 32
Q ss_pred EEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
+.... ..+.++++.+++ .+..++.+.|.++ ||.++++. ++++|++++...+++|+++++
T Consensus 328 ~~~~~-------~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~------------~~~iRis~~~~~~~e~i~~~~ 387 (397)
T 2ord_A 328 VADVR-------GMGLMIGIQFREEVSNREVATKCFEN-KLLVVPAG------------NNTIRFLPPLTVEYGEIDLAV 387 (397)
T ss_dssp EEEEE-------EETTEEEEEECTTSCHHHHHHHHHHT-TEECEEET------------TTEEEECCCTTCCHHHHHHHH
T ss_pred eEEEE-------EEeEEEEEEECChHHHHHHHHHHHHC-CCEEccCC------------CCEEEEECCcCCCHHHHHHHH
Confidence 22111 226788898874 4578899999987 99998763 578999998889999999999
Q ss_pred HHHHHHHHhh
Q 012718 445 HALNETVSFF 454 (458)
Q Consensus 445 ~~l~~~~~~~ 454 (458)
++|+++++++
T Consensus 388 ~~l~~~l~~~ 397 (397)
T 2ord_A 388 ETLKKVLQGI 397 (397)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhC
Confidence 9999988653
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=241.38 Aligned_cols=295 Identities=19% Similarity=0.213 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+..+++++.+++++|.+ ++++++||++|+..++.++ +++||+|+++.++|++....+..+++..|++++.++
T Consensus 58 ~~~~~~l~~~la~~~g~~---~~i~~~sG~~ai~~~~~~~----~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 130 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA---GSAAFGSGMGAISSSTLAF----LQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLID 130 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHTTT----CCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 456778999999999986 5677778899999999877 689999999999999887777776788899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc--cCCCCCCCCcEEEec
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM--VVDVQGLDADFLVAS 267 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~--~~~~~~~~~d~~~~s 267 (458)
.. |++++++.+++++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.. +++ .++|+++.|
T Consensus 131 ~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~~~di~~~S 202 (389)
T 3acz_A 131 TS-----DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---LGADIALHS 202 (389)
T ss_dssp TT-----CHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---TTCSEEEEE
T ss_pred CC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---cCCeEEEEC
Confidence 74 89999999999999999999999999999999999999999999999999987653 443 579999999
Q ss_pred ccCCCC-CCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 268 SHKMCG-PTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 268 ~~K~~g-p~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
+||+++ +.+ +|++++++ ++++.+.+....+ .++.+.....++..+++. ++
T Consensus 203 ~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~---------------------g~~~~~~~~~~~~~~l~~-----l~ 256 (389)
T 3acz_A 203 VSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDA---------------------GSLMAPMDAFLCARGMKT-----LP 256 (389)
T ss_dssp TTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH---------------------CCCCCHHHHHHHHHHHTT-----HH
T ss_pred ChhhccCCCCceeEEEEECcHHHHHHHHHHHHhc---------------------CCCCCHHHHHHHHcCccH-----HH
Confidence 999665 555 59999998 7776665433111 123333333333333332 33
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEe-CCCCCC----------cCccccEEEEEeCCCChHHHHHHHhhhcCeEecc---
Q 012718 344 KIHAYEMELAKYLYENLLSIPNIRIY-GPKPSE----------HVQRAALCSFNVENIHPTDIATLLDQQYGVATRS--- 409 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~--- 409 (458)
...++..++++.+.+.|++.+.++-. .+.-.. ....+++++|.+++ ..++.+.+.+. ++.++.
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~l~~~-~i~~~~~s~ 333 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--FEAAKKLMEHL-KVCTLAVSL 333 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--HHHHHHHHTTC-SSSEEBSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--HHHHHHHHHhC-CCcEECcCC
Confidence 34455556777777777766544322 111000 01236799999976 56677777766 887766
Q ss_pred C------CCCChhhH--------hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 410 G------HHCAQPLH--------RYLGV-NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 410 g------~~~~~~~~--------~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
| .+|....+ ..+|. ++.+|+|++..+ ++.+++.|.++++
T Consensus 334 G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~----~~~li~~l~~al~ 387 (389)
T 3acz_A 334 GCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIEN----VDDIIADLKQALE 387 (389)
T ss_dssp CCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSC----HHHHHHHHHHHHT
T ss_pred CCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCC----HHHHHHHHHHHHh
Confidence 5 55654332 23454 689999999854 4444455554443
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=240.39 Aligned_cols=298 Identities=18% Similarity=0.226 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.++++.|.+ ++++++||++|+..++.++ +++||+|+++++.|++....+....+..|++++.++
T Consensus 80 ~p~~~~l~~~la~~~g~~---~~~~~~sG~~Ai~~al~~l----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 152 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGAP---AAFATASGMAAVFTSLGAL----LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVD 152 (414)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred ChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeC
Confidence 456778999999999975 7899999999999999887 789999999999999877666666677899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.+ |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+.... ....+.|+++.|++
T Consensus 153 ~~-----d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~-~~~~g~div~~S~s 226 (414)
T 3ndn_A 153 GD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQ-GFPLGVDVVVYSGT 226 (414)
T ss_dssp TT-----CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC-CGGGTCSEEEEETT
T ss_pred CC-----CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCC-chhcCCCeEeccCC
Confidence 76 8999999999999999999999999999999999999999999999999999665422 22567899999999
Q ss_pred CCCCCCc---eeEEEEeccccc-cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMCGPTG---IGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~gp~g---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|++|+.| +|+++.+++.+. .+....... .++.+....+. ++..+.. +...
T Consensus 227 K~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~---------------------g~~~~~~~a~~---~~~~l~~--l~~r 280 (414)
T 3ndn_A 227 KHIDGQGRVLGGAILGDREYIDGPVQKLMRHT---------------------GPAMSAFNAWV---LLKGLET--LAIR 280 (414)
T ss_dssp TTTTCSSCCCCEEEEECHHHHTTHHHHHHHHH---------------------CCCCCHHHHHH---HHHHGGG--HHHH
T ss_pred ccccCCCCceEEEEEECHHHHHHHHHHHHHHc---------------------CCCCCHHHHHH---HHHHHHH--HHHH
Confidence 9988877 799999887654 333211100 12233322222 2222222 3445
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEe-CCCCCCc----------CccccEEEEEeCCC------ChHHHHHHHhhhcCeEec
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIY-GPKPSEH----------VQRAALCSFNVENI------HPTDIATLLDQQYGVATR 408 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~----------~~~~~~v~~~~~~~------~~~~~~~~l~~~~gi~~~ 408 (458)
.++..++++++.+.|++.|++... .|.-... ...+++++|.+++. ....+.+.+... ++.++
T Consensus 281 ~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~-~~~~s 359 (414)
T 3ndn_A 281 VQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLI-DISNN 359 (414)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSS-EECSC
T ss_pred HHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccc-eEcCC
Confidence 566678888999999988887643 3321100 12467999999763 234566666544 77777
Q ss_pred cCCCCChhh--------------HhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 409 SGHHCAQPL--------------HRYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 409 ~g~~~~~~~--------------~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.|..++.-. ...+|. ++.+|+|++. ||++.+++.|++++
T Consensus 360 ~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 360 LGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp CSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 776544210 112343 6899999997 67777777777665
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=235.97 Aligned_cols=341 Identities=10% Similarity=0.038 Sum_probs=236.8
Q ss_pred CCeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++..|+|..+. +..++.+.+++.+.+.....+.. +.+ ......++++.++++++.+.+ +|+||+|++
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~la~~~~~~~~-~v~~~~ggt 113 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMF-GGI-----THAPAIELCRKLVAMTPQPLE-CVFLADSGS 113 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCC-SSE-----ECHHHHHHHHHHHHHSCTTCC-EEEEESSHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccc-ccc-----CCHHHHHHHHHHHHhCCCCCC-EEEEeCCHH
Confidence 34467776433 23689999999999876432211 111 123345778899999987665 999999999
Q ss_pred HHHHHHHHHcCCCCC----CCCCEEEEcCCCCccchHHHHHHHH-----H--c---CCeEEEEeCCC-----C-CCCCHH
Q 012718 140 EAINLVAYSWGLSNL----KSGDEVILTVAEHHSAIVPWQLVAQ-----K--T---GANLKFLNLND-----D-ESPDLD 199 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~----~~g~~vl~~~~~~~s~~~~~~~~a~-----~--~---g~~~~~v~~~~-----~-~~~d~~ 199 (458)
+|++.++.++.. .. ++|++|++.+++|++.......+.. + . ...+..++.+. + +.+|++
T Consensus 114 ea~~~ai~~~~~-~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 192 (429)
T 1s0a_A 114 VAVEVAMKMALQ-YWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMV 192 (429)
T ss_dssp HHHHHHHHHHHH-HHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGH
T ss_pred HHHHHHHHHHHH-HhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHH
Confidence 999999886510 01 2589999999999976543322110 0 0 11345555542 2 357999
Q ss_pred HHHHhhc---CCceEEEEecc-cCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEe
Q 012718 200 KLKEMLS---RKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVA 266 (458)
Q Consensus 200 ~l~~~l~---~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~ 266 (458)
++++.++ +++++|+++.+ +||||.+.+ +++|.++|+++|+++|+|++|+ +|... .+.....+|++
T Consensus 193 ~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~-- 270 (429)
T 1s0a_A 193 GFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL-- 270 (429)
T ss_dssp HHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--
T ss_pred HHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--
Confidence 9999987 46788888888 899998887 9999999999999999999997 54321 22223457876
Q ss_pred cccCCCC-C-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 267 SSHKMCG-P-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 267 s~~K~~g-p-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
|++|.++ + .++|++++++++++.+.....++. ......+.+...+.++.++++.+.+ +.
T Consensus 271 t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~----------------~~~~t~~~n~~~~~a~~aal~~~~~---~~ 331 (429)
T 1s0a_A 271 CLGKALTGGTMTLSATLTTREVAETISNGEAGCF----------------MHGPTFMGNPLACAAANASLAILES---GD 331 (429)
T ss_dssp EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSC----------------SCCCTTTTCHHHHHHHHHHHHHHHT---CH
T ss_pred EecccccCCCccceEEEeCHHHHHHhhcCCCccc----------------ccCCCCCCCHHHHHHHHHHHHHHHh---CC
Confidence 4679555 4 569999999887665532100000 0001224577777788888887765 25
Q ss_pred HHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhh
Q 012718 345 IHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRY 420 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~ 420 (458)
+.++++++++++.+.|+++ +++....+ .+.++++.+++ .+..++.+.|.++ ||.+++.
T Consensus 332 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~---------- 393 (429)
T 1s0a_A 332 WQQQVADIEVQLREQLAPARDAEMVADVRV-------LGAIGVVETTHPVNMAALQKFFVEQ-GVWIRPF---------- 393 (429)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-------ETTEEEEEESSCBCHHHHHHHHHHT-TEECCCB----------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEE-------eeEEEEEEECCcccHHHHHHHHHHC-CCEEecc----------
Confidence 6788888899999998775 45543222 25688888874 4677899999887 9999752
Q ss_pred cCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 421 LGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 421 ~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+++||+++..++++|+++++++|++++++++.
T Consensus 394 ---~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~~~ 426 (429)
T 1s0a_A 394 ---GKLIYLMPPYIILPQQLQRLTAAVNRAVQDETF 426 (429)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHTSSGGG
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 368999999889999999999999999876543
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=236.54 Aligned_cols=321 Identities=12% Similarity=0.089 Sum_probs=226.1
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH---HcCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY---SWGLS 152 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~---~l~~~ 152 (458)
.+..++.+.+++.+.+..... . . ..+...+...++++.++++++.+.+++|++|+|+++|+..++. .+
T Consensus 55 lg~~~~~v~~a~~~~~~~~~~-~--~---~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~--- 125 (426)
T 1sff_A 55 TGHLHPKVVAAVEAQLKKLSH-T--C---FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA--- 125 (426)
T ss_dssp TCBTCHHHHHHHHHHTTTCSC-C--C---TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH---
T ss_pred cCCCCHHHHHHHHHHHHhCCC-c--c---ccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHh---
Confidence 345788899999888754211 1 1 0122345677899999999932332489999999999999987 44
Q ss_pred CCCCCCEEEEcCCCCccchHHHHHHHHHcCCe-------------EEEEeCCCC-----CCCCHHHHHHhhc-----CCc
Q 012718 153 NLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-------------LKFLNLNDD-----ESPDLDKLKEMLS-----RKT 209 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~-------------~~~v~~~~~-----~~~d~~~l~~~l~-----~~~ 209 (458)
.++| +|++.+++|++....+..+ .|.+ ++.++.+.+ +.+|+++|++.++ +++
T Consensus 126 -~~~~-~vi~~~p~y~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 200 (426)
T 1sff_A 126 -TKRS-GTIAFSGAYHGRTHYTLAL---TGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDI 200 (426)
T ss_dssp -HTCC-EEEEETTCCCCSSHHHHHH---SSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGE
T ss_pred -hCCC-eEEEECCCcCCCchHhhhh---cCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCce
Confidence 3555 8999999999765433332 2332 677777531 2368999999886 467
Q ss_pred eEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCCCc--ee
Q 012718 210 KLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGPTG--IG 278 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp~g--~G 278 (458)
++|+++...++||...+ +++|.++|++||+++|+|++|+ ++.. .++.....+|++ |+||.+|+ | +|
T Consensus 201 ~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-GlriG 277 (426)
T 1sff_A 201 AAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPLA 277 (426)
T ss_dssp EEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCCE
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCceE
Confidence 78888554444997777 9999999999999999999998 3221 112222346765 78898887 7 79
Q ss_pred EEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012718 279 FLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYE 358 (458)
Q Consensus 279 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~ 358 (458)
++++++++++.+..... ....+.+.....++.++++.+.+. .+.++++++++++.+
T Consensus 278 ~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~ 333 (426)
T 1sff_A 278 GVTGRAEVMDAVAPGGL---------------------GGTYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKD 333 (426)
T ss_dssp EEEEEHHHHTTSCTTSB---------------------CCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHH
T ss_pred EEEEcHHHHhhhccCCc---------------------CcCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHH
Confidence 99999988776653211 011245667777777888887653 456677777777777
Q ss_pred HHhc----CCCEEEeCCCCCCcCccccEEEEEeCC---------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 359 NLLS----IPNIRIYGPKPSEHVQRAALCSFNVEN---------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 359 ~L~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
.|++ ++.+....+ .+.++++.+.+ .+..++.+.|.++ ||.+++|..+ ++
T Consensus 334 ~l~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~----------~~ 395 (426)
T 1sff_A 334 GLLAIAEKHPEIGDVRG-------LGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGPY----------YN 395 (426)
T ss_dssp HHHHHHHTCTTEEEEEE-------ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEESTT----------SC
T ss_pred HHHHHHHhCCCeEEEEE-------EEEEEEEEEecCccccCCChHHHHHHHHHHHHC-CcEEecCCCC----------CC
Confidence 7765 333332211 26788998842 2356788888888 9999987631 57
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
++|++++..++++|+++++++|++++++++
T Consensus 396 ~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 396 VLRILVPLTIEDAQIRQGLEIISQCFDEAK 425 (426)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 899999988999999999999999998764
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=240.84 Aligned_cols=345 Identities=12% Similarity=0.116 Sum_probs=234.8
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhH-HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAK-ATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+.|..+ ..+.++.+.+++.+.+.... .++.. .++.+.. ..+..+.+++.+++++|+++. +|++++| |+|+.+
T Consensus 27 ~i~l~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~~sG-t~a~~~ 102 (417)
T 3n0l_A 27 GLEMIAS-ENFTLPEVMEVMGSILTNKYAEGYPGK-RYYGGCEFVDEIETLAIERCKKLFNCKFA-NVQPNSG-SQANQG 102 (417)
T ss_dssp SEECCTT-CCCCCHHHHHHHTBGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSH-HHHHHH
T ss_pred Ceeeecc-cCCCCHHHHHHHhhhhhccccccCCCc-cccccchHHHHHHHHHHHHHHHHhCCCCc-ceEeccH-HHHHHH
Confidence 3555433 33458889999888764322 12211 1112222 234444688899999999753 5666555 899999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHH-HHHcCCeEEEEeCCCCCCCCHHHHHHhhc-CCceEEEEecccCcCc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-AQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIHHISNMLA 222 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG 222 (458)
++.++ +++||+|+++.++|++........ ....+..++.++++.++.+|++++++.++ .++++|++++++| |
T Consensus 103 ~~~~~----~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G 176 (417)
T 3n0l_A 103 VYAAL----INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--A 176 (417)
T ss_dssp HHHHH----SCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--C
T ss_pred HHHHh----cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--C
Confidence 99988 789999999999998764322221 12235567777777678899999999998 5889998887764 9
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCC-CCCceeEEEEe-ccccccCCCccc
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGK-SDLLSAMPPFLG 295 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~-~~~~~~l~~~~~ 295 (458)
...|+++|.++|+++|+++|+|++|+.|.. +..+. +.|++++|+||.+ |+. +|+++.+ +++++.+.....
T Consensus 177 ~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~-~G~~~~~~~~~~~~~~~~~~ 253 (417)
T 3n0l_A 177 RVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPR-GGIIMTNDEELAKKINSAIF 253 (417)
T ss_dssp SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCS-CEEEEESCHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCC-eeEEEECCHHHHHHHhhhhC
Confidence 999999999999999999999999875543 22222 4799999999955 455 5999998 566655543222
Q ss_pred cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE 375 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~ 375 (458)
. ...++++...+.++..++......+++++.+++.++++++.+.|.+. ++++.....
T Consensus 254 ~--------------------~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-- 310 (417)
T 3n0l_A 254 P--------------------GIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGT-- 310 (417)
T ss_dssp T--------------------TTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC--
T ss_pred C--------------------cccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCC--
Confidence 1 11356777777777777776544457888999999999999999884 888765321
Q ss_pred cCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC----CCHHHHHHHHHHHHH
Q 012718 376 HVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY----NTKEDVDEFIHALNE 449 (458)
Q Consensus 376 ~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~----~t~~di~~l~~~l~~ 449 (458)
...++++.+. +.+..++.+.|.++ ||.++++.....+. ..+ ....+|+++... .+++|++++++.|.+
T Consensus 311 ---~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~-~~~-~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~ 384 (417)
T 3n0l_A 311 ---DNHLVLMSFLDREFSGKDADLALGNA-GITANKNTVPGEIR-SPF-ITSGLRLGTPALTARGFKEKEMEIVSNYIAD 384 (417)
T ss_dssp ---SSSEEEEECTTSSSCHHHHHHHHHHT-TEECEECCCTTCCS-CTT-TCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---CceEEEEEcccCCCCHHHHHHHHHHc-CeEEeccccCCCCc-ccC-CCCeeEecCHHHhhCCCCHHHHHHHHHHHHH
Confidence 2557778775 34677888888877 99998654221100 001 146799987632 468999999999999
Q ss_pred HHHhh
Q 012718 450 TVSFF 454 (458)
Q Consensus 450 ~~~~~ 454 (458)
+++..
T Consensus 385 ~l~~~ 389 (417)
T 3n0l_A 385 ILDDV 389 (417)
T ss_dssp HHHTT
T ss_pred HHhcc
Confidence 98754
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=234.20 Aligned_cols=337 Identities=15% Similarity=0.121 Sum_probs=230.8
Q ss_pred EecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 70 YLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 70 ~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
|+|.+... +.++++.+++.+.+... .+. .....+++++.+++++|.+ ++++++|||+|+..++.+
T Consensus 4 ~~~~~~~~~~~~~~v~~a~~~~~~~~-------~~~----~~~~~~~l~~~la~~~~~~---~~~~~~sGt~al~~al~~ 69 (367)
T 3nyt_A 4 FIDLKNQQARIKDKIDAGIQRVLRHG-------QYI----LGPEVTELEDRLADFVGAK---YCISCANGTDALQIVQMA 69 (367)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHC-------CCS----SCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHHhcC-------Ccc----CChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHH
Confidence 34443333 45677777777776542 111 1245678999999999986 899999999999999998
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
+ .+++||+|+++.++|++.. ..++..|++++.++++++ +.+|++++++++++++++|+ ++|++|...|+
T Consensus 70 ~---~~~~gd~Vi~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~ 139 (367)
T 3nyt_A 70 L---GVGPGDEVITPGFTYVATA----ETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADF 139 (367)
T ss_dssp T---TCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCH
T ss_pred h---CCCCcCEEEECCCccHHHH----HHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhH
Confidence 8 3689999999999999654 445667999999999876 88899999999998998888 66789999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCC--cEEEecc--cCCCCCCc-eeEEEEec-cccccCCCccccCcceE
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDA--DFLVASS--HKMCGPTG-IGFLFGKS-DLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~--d~~~~s~--~K~~gp~g-~G~l~~~~-~~~~~l~~~~~g~~~~~ 301 (458)
++|.++|+++|+++|+|++|+.|.. .+....+. |++++|+ +|++|+.| +|+++.++ ++.+.+......+...
T Consensus 140 ~~i~~la~~~~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~- 217 (367)
T 3nyt_A 140 DAINAIASKYGIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDR- 217 (367)
T ss_dssp HHHHHHHHHTTCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-
T ss_pred HHHHHHHHHcCCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCc-
Confidence 9999999999999999999998765 23222222 9999996 89888755 78888754 4554444332221110
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA 381 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 381 (458)
.|.....++.. ..+....+ .++..+. .++...++.+++++++.+.|.++ ++.+...... .....
T Consensus 218 -------~~~~~~~g~~~-~~~~~~aa---~~~~~l~--~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~--~~~~~ 281 (367)
T 3nyt_A 218 -------RYHHIRVGVNS-RLDTLQAA---ILLPKLE--IFEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVN--NISVY 281 (367)
T ss_dssp -------TTEECSCCCBC-CCCHHHHH---HHHHHHH--THHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTT--EECCC
T ss_pred -------CceeeccCcCC-CccHHHHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHhccC-CeeccCCCCC--Cceee
Confidence 00000001111 22222222 2223333 25677788889999999999887 5544332211 11122
Q ss_pred -EEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcC------------CCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 382 -LCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLG------------VNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 382 -~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g------------~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
++.+.++ +.+++.+.|.++ ||.++.+..+.......+. ....+|++++..+|++||+++++.|+
T Consensus 282 ~~~~~~~~--~~~~l~~~L~~~-GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~ 358 (367)
T 3nyt_A 282 AQYTVRMD--NRESVQASLKAA-GVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALT 358 (367)
T ss_dssp SSEEEECS--SHHHHHHHHHHH-TCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEeC--CHHHHHHHHHHC-CCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHH
Confidence 3445554 678899999999 9998866431211111121 04689999999999999999999987
Q ss_pred HHH
Q 012718 449 ETV 451 (458)
Q Consensus 449 ~~~ 451 (458)
+.-
T Consensus 359 ~~~ 361 (367)
T 3nyt_A 359 NLE 361 (367)
T ss_dssp C--
T ss_pred HHh
Confidence 653
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=237.50 Aligned_cols=329 Identities=13% Similarity=0.126 Sum_probs=232.4
Q ss_pred eEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 68 LVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 68 ~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
..|+|..+. +..++.+.+++.+.+........ . ...+..+++++.+++++|.+ ++++|+|+++|
T Consensus 39 ~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~---~----~~~~~~~~l~~~la~~~~~~---~v~~~~gg~~a 108 (406)
T 4adb_A 39 KEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGN---G----YTNEPVLRLAKKLIDATFAD---RVFFCNSGAEA 108 (406)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT---T----SCCHHHHHHHHHHHHHSSCS---EEEEESSHHHH
T ss_pred CEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccC---C----cCCHHHHHHHHHHHhhCCCC---eEEEeCcHHHH
Confidence 345665433 34588999999988765322111 0 11344678899999999865 89999999999
Q ss_pred HHHHHHHcCCC---CC-CCCCEEEEcCCCCccchHHHHHHHHH---------cCCeEEEEeCCCCCCCCHHHHHHhhcCC
Q 012718 142 INLVAYSWGLS---NL-KSGDEVILTVAEHHSAIVPWQLVAQK---------TGANLKFLNLNDDESPDLDKLKEMLSRK 208 (458)
Q Consensus 142 ~~~~~~~l~~~---~~-~~g~~vl~~~~~~~s~~~~~~~~a~~---------~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 208 (458)
+..++.++... .- ..+++|++.+++|++........... .+..+..++.. |+++|++.++++
T Consensus 109 ~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~ 183 (406)
T 4adb_A 109 NEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALIDDS 183 (406)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTCSTT
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHhcCC
Confidence 99999876200 00 23489999999999876444332110 01244555543 899999999989
Q ss_pred ceEEEEecccCcCcccc-----cHHHHHHHHHhcCcEEEEecccc-CCcc--c--CCCCCCCCcEEEecccCCCCCCc--
Q 012718 209 TKLVVIHHISNMLASIL-----PIEEIVHWSHDVGAKVLVDACQS-VPHM--V--VDVQGLDADFLVASSHKMCGPTG-- 276 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~-----~l~~i~~l~~~~~~~vivD~a~~-~g~~--~--~~~~~~~~d~~~~s~~K~~gp~g-- 276 (458)
+++|+++ |+||+|.++ ++++|.++|++||+++|+|++|+ ++.. + .+.....+|++ ++||.++ .|
T Consensus 184 ~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r 259 (406)
T 4adb_A 184 TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-GGFP 259 (406)
T ss_dssp EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSC
T ss_pred eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc-CCCC
Confidence 9999999 889999876 38899999999999999999996 3221 1 11223346777 4699777 45
Q ss_pred eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012718 277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYL 356 (458)
Q Consensus 277 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l 356 (458)
+|++++++++++.+.+...+. ..+.+.....++.++++.+.. +++.++++++++++
T Consensus 260 ~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l 315 (406)
T 4adb_A 260 VGALLATEECARVMTVGTHGT---------------------TYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWF 315 (406)
T ss_dssp CEEEEECHHHHHTCCTTSSCC---------------------SSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHH
T ss_pred eEEEEEcHHHHhhhccCCcCC---------------------CCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHH
Confidence 999999998887776543211 124566666666666765533 67788888888888
Q ss_pred HHHHhcCCC-EEEeCCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC
Q 012718 357 YENLLSIPN-IRIYGPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH 432 (458)
Q Consensus 357 ~~~L~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~ 432 (458)
.+.|+++.. +...... ...+.++++.+++. +..++.+.|.++ ||.++++. ++++|++++
T Consensus 316 ~~~l~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~------------~~~iRi~~~ 378 (406)
T 4adb_A 316 VERLNTINHRYGLFSEV----RGLGLLIGCVLNADYAGQAKQISQEAAKA-GVMVLIAG------------GNVVRFAPA 378 (406)
T ss_dssp HHHHHHHHHHHCCEEEE----EEETTEEEEEECTTTTTCHHHHHHHHHHT-TEECEESS------------TTEEEECCC
T ss_pred HHHHHHHHHhCCCceEE----EEEEEEEEEEEeCCcHHHHHHHHHHHHHC-CcEEeecC------------CCeEEEECC
Confidence 888876411 1000011 12366888988753 578899999988 99998764 679999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 433 FYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 433 ~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
..++++|+++++++|+++++++.+
T Consensus 379 ~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 379 LNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999987754
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-29 Score=250.56 Aligned_cols=358 Identities=14% Similarity=0.062 Sum_probs=235.4
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CC--CCCcEEEeCCh
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--AS--DSGEIVFTKNA 138 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~--~~~~v~~t~g~ 138 (458)
+++.|..+..+..++.+++++.+.+.... +. .. .....++++.+++++ + .+ ++++|++|+|+
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a~~~~~~~~~-y~--~~-------~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~ 173 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAEWVNGAVANN-YP--VP-------DRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGG 173 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHTCS-CC--SS-------SSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHH
T ss_pred hheeccCCCCCcCCcHHHHHHHHHHHhCC-CC--CC-------cccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCH
Confidence 45667777766667777777766665321 11 00 011224555555555 2 22 22489999999
Q ss_pred hHHHHHHHHHcCC-CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC----CCCCCHHHHHHhhcCCceEEE
Q 012718 139 TEAINLVAYSWGL-SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----DESPDLDKLKEMLSRKTKLVV 213 (458)
Q Consensus 139 t~a~~~~~~~l~~-~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~----~~~~d~~~l~~~l~~~~~~v~ 213 (458)
|+|+.+++.++.. ..+++||+|+++.|+|++. ...++..|++++.++++. ++.+|+++|++.+++++++|+
T Consensus 174 t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~ 249 (533)
T 3f6t_A 174 TAAIVYAFHSLAENHLLKKGDKIAINEPIFTPY----LRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALI 249 (533)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHH----HTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEE
T ss_pred HHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHH----HHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEE
Confidence 9999999987200 0168999999999999953 555566789999999863 467899999999999999999
Q ss_pred EecccCcCcccccHH---HHHHHHH-hcCcEEEEeccccCCccc-CCCC--CCCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 214 IHHISNMLASILPIE---EIVHWSH-DVGAKVLVDACQSVPHMV-VDVQ--GLDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 214 ~~~~~n~tG~~~~l~---~i~~l~~-~~~~~vivD~a~~~g~~~-~~~~--~~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
+++++||||.++|.+ +|+++|+ ++|+++|+|++|+..... ..+. ..+.+++++|+||.+|++| +|++++++
T Consensus 250 l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~ 329 (533)
T 3f6t_A 250 VVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNE 329 (533)
T ss_dssp EESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEES
T ss_pred EeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECc
Confidence 999999999999965 8888888 689999999999832211 1111 1236699999999999888 99999998
Q ss_pred c-----ccccCCCccc--------cCcceEe--eecCC--CCCCCCCCccCCCCCCHHHHHHHH-HHHHHHH--------
Q 012718 285 D-----LLSAMPPFLG--------GGEMISD--VFLDH--STFADPPSRFEAGTPAIGEAIGLG-AAIDYLS-------- 338 (458)
Q Consensus 285 ~-----~~~~l~~~~~--------g~~~~~~--~~~~~--~~~~~~~~~~~~gt~~~~~~~~l~-~al~~~~-------- 338 (458)
+ +++.+.+... ....... .+.+. .... ....+..++++.....++. .++..+.
T Consensus 330 ~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~-~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~ 408 (533)
T 3f6t_A 330 KNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSR-SIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSD 408 (533)
T ss_dssp SCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHT-TTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTB
T ss_pred HHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHH-HHHHhcccCCChHHHHHHHHHHHHHHhhhccccch
Confidence 7 5555432100 0000000 00000 0000 0111223344544444422 1334442
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----------------CChHHHHHHHhh
Q 012718 339 TIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----------------IHPTDIATLLDQ 401 (458)
Q Consensus 339 ~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------------~~~~~~~~~l~~ 401 (458)
...+++.+++++++++++.+.|. + ++.+..+. .+.++++.++. .+..++...+.+
T Consensus 409 ~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~~------~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~ 480 (533)
T 3f6t_A 409 DPYIDIARKLVSERYDQLHDAMQ-A-PKDETDTN------THYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAE 480 (533)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTTB------CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-C-CccccCCC------ceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHH
Confidence 11257788889999999999997 5 44433322 24577777652 345566666654
Q ss_pred hcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 402 QYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 402 ~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
++||.+.+|..|..+ ++++|+|++. .+++|+++++++|.++++++.
T Consensus 481 ~~GV~v~pg~~f~~~-------~~~iRls~a~-~~~e~i~~~i~~L~~~l~~~~ 526 (533)
T 3f6t_A 481 KNGVVLVDGVGFGAK-------PGELRVSQAN-LPTEDYALIGKQVLELLKEYY 526 (533)
T ss_dssp HTTSSSCTTEEECSS-------TTEEEEESSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCEEEeCCcccCCC-------CCEEEEEEee-CCHHHHHHHHHHHHHHHHHHH
Confidence 449999999876542 5799999975 588999999999999988764
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=244.84 Aligned_cols=341 Identities=12% Similarity=0.089 Sum_probs=226.1
Q ss_pred CCCCcccccccCCCCeEEecCCCCCC-CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHH-----HHHHHHHHHHcCC
Q 012718 53 PDFPILHQEVYGSKKLVYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY-----ELARKKVAAFINA 126 (458)
Q Consensus 53 ~~f~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~la~~~g~ 126 (458)
+.||...... ++++++|+.+.... .|+.+.+++.+... ...+. +. .++...... .++|+++|++++.
T Consensus 11 ~~~~~~~~~~--~~~~i~l~~g~p~~~~~~~~~~~~~~~~~-~~~~~--~~--~~Y~~~~G~~~~~~~~lr~aia~~~~~ 83 (391)
T 3bwn_A 11 EKISNKNIPM--SDFVVNLDHGDPTAYEEYWRKMGDRCTVT-IRGCD--LM--SYFSDMTNLCWFLEPELEDAIKDLHGV 83 (391)
T ss_dssp -------CCT--TTSCEECSSCCCGGGHHHHHHTGGGSCEE-ECTTT--TC--SSCSCTTSSSTTSCHHHHHHHHHHHHH
T ss_pred cccCCCCccC--CCCeeEcCCCCCCCCCCHHHHHhHHHHhh-cCccc--hh--hcCCCCCCcccccCHHHHHHHHHHHHh
Confidence 4466543332 36789998887763 33333333311110 00000 10 111122233 6788999998873
Q ss_pred -----CCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC----EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCC
Q 012718 127 -----SDSGEIVFTKNATEAINLVAYSWGLSNLKSGD----EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPD 197 (458)
Q Consensus 127 -----~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~----~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d 197 (458)
.++++|++|+|+++++.+++.++ +++|| +|++++|+|. .+...++..|++++.++++.++. +
T Consensus 84 ~g~~~~~~~~i~~t~G~~~al~~~~~~l----~~~Gd~~~~~Vlv~~P~y~----~~~~~~~~~g~~~~~~~~d~~~l-~ 154 (391)
T 3bwn_A 84 VGNAATEDRYIVVGTGSTQLCQAAVHAL----SSLARSQPVSVVAAAPFYS----TYVEETTYVRSGMYKWEGDAWGF-D 154 (391)
T ss_dssp HCSBCCSSSEEEEEEHHHHHHHHHHHHH----HHTSSSSSEEEEECSSCCT----HHHHHHHTTCBTTEEEEEESTTC-C
T ss_pred cCCCCCCCCeEEEeCChHHHHHHHHHHh----cCCCCCCcceEEEcCCCch----hHHHHHHHcCCeEEEecCCHHHc-C
Confidence 23248999999999999999998 67899 9999999999 45667777899999888765432 1
Q ss_pred HHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc-cCCCCCCCCcEEEecccCCCCCCc
Q 012718 198 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 198 ~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~~~~~~~~d~~~~s~~K~~gp~g 276 (458)
.+++++|++++++||||.+++ +|++.++.++++||+|++|..+.. ++.. ..+.+++++|+||.+|++|
T Consensus 155 --------~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~~~S~SK~~g~~G 223 (391)
T 3bwn_A 155 --------KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIMLFTFSKITGHAG 223 (391)
T ss_dssp --------CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCC-CBCCSEEEEEHHHHHSCGG
T ss_pred --------CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEEEEechhhcCCCc
Confidence 257899999999999999997 444422223499999999986432 2322 3467999999999999888
Q ss_pred --eeEEEE-eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH---------HhCHHH
Q 012718 277 --IGFLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS---------TIGMQK 344 (458)
Q Consensus 277 --~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~---------~~g~~~ 344 (458)
+||+++ ++++++.+..... ....+++...+.++..+++... +..+++
T Consensus 224 lRiG~~~~~~~~l~~~l~~~~~---------------------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 282 (391)
T 3bwn_A 224 SRIGWALVKDKEVAKKMVEYII---------------------VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKY 282 (391)
T ss_dssp GCEEEEEECCHHHHHHHHHHHH---------------------HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHH
T ss_pred cceEEEEecCHHHHHHHHHHhc---------------------ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHH
Confidence 799998 7777666553321 0012455555556666665432 223778
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc-------CccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 345 IHAYEMELAKYLYENLLSIPNIRIYGPKPSEH-------VQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
++++++++++++.+.|++++++++..+.+... ...+.++|+.+++ ...+.+.|.++ ||.+++|..|..
T Consensus 283 ~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~--~~~~~~~l~~~-gV~v~pg~~fg~-- 357 (391)
T 3bwn_A 283 GREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE--ETDLVSELRRH-KVMSRAGERCGS-- 357 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS--SCCHHHHHHHT-TEECEEGGGGTC--
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc--HHHHHHHHHHC-CEEEccCCCCCC--
Confidence 89999999999999999987887754432100 0113478888874 24566677766 999999986521
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.++++|||++ .+++++++++++|.+++++
T Consensus 358 -----~~~~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 358 -----DKKHVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp -----CTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred -----CCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 2679999999 5889999999999988764
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=243.20 Aligned_cols=299 Identities=21% Similarity=0.221 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
..+++++.+++++|.+ ++++++||++|+..++. + +++||+|+++++.|++....+...++..|++++.++.+
T Consensus 134 ~~~~l~~~la~~~g~~---~~i~~~sGt~al~~~l~-~----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 205 (464)
T 1ibj_A 134 TRDALESLLAKLDKAD---RAFCFTSGMAALSAVTH-L----IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT 205 (464)
T ss_dssp HHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHT-T----SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT
T ss_pred HHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHH-H----hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 5778999999999975 77888888999988775 4 68999999999999977655555567789999999875
Q ss_pred CCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC
Q 012718 192 DDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM 271 (458)
Q Consensus 192 ~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 271 (458)
|++++++++++++++|++++++||||.+.|+++|+++|+++|+++|+|++|+.|.....+ ++++|+++.|+||+
T Consensus 206 -----d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~-~~~~div~~S~sK~ 279 (464)
T 1ibj_A 206 -----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL-ELGADIVMHSATKF 279 (464)
T ss_dssp -----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG-GTTCSEEEEETTTT
T ss_pred -----CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCEEEEECCccc
Confidence 899999999999999999999999999999999999999999999999999987651112 25799999999996
Q ss_pred C-CCCc--eeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Q 012718 272 C-GPTG--IGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347 (458)
Q Consensus 272 ~-gp~g--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~ 347 (458)
+ |+.| +|++++++ ++++.+...... ..++.+.....++..+++.+... +++..+
T Consensus 280 ~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~---------------------~g~~~~~~~~~a~~~al~~~~~r-~~~~~~ 337 (464)
T 1ibj_A 280 IAGHSDVMAGVLAVKGEKLAKEVYFLQNS---------------------EGSGLAPFDCWLCLRGIKTMALR-IEKQQE 337 (464)
T ss_dssp TTCSSCCCCEEEEECSHHHHHHHHHHHHH---------------------TTCBCCHHHHHHHHHHHTTHHHH-HHHHHH
T ss_pred ccCCCCCcEEEEEEChHHHHHHHHHHHHh---------------------cCCCCCHHHHHHHHhchhhHHHH-HHHHHH
Confidence 5 4667 49999986 565555432210 01223333333333444322111 222223
Q ss_pred HHHHHHHHHHH----------HHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC-hHHHHHHHhhhcCeEeccCC----C
Q 012718 348 YEMELAKYLYE----------NLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH-PTDIATLLDQQYGVATRSGH----H 412 (458)
Q Consensus 348 ~~~~l~~~l~~----------~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~~gi~~~~g~----~ 412 (458)
....+.+++.+ .|.++|++++..+.. ...+++++|.+.+.. ...+.+.|... ||.++.|. .
T Consensus 338 ~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~---~g~g~~~~~~l~~~~~~~~~~~~L~~~-gi~v~~G~~~sl~ 413 (464)
T 1ibj_A 338 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQA---KGAGSVFSFITGSVALSKHLVETTKYF-SIAVSFGSVKSLI 413 (464)
T ss_dssp HHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTC---SCCCSEEEEECSCHHHHHHHHHHCSSS-EECSCCCSSSCEE
T ss_pred HHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccC---CCCceEEEEEECCHHHHHHHHHhcCcc-eEeecCCCCceee
Confidence 33333333332 333445555544331 134679999986422 23466677665 89888886 2
Q ss_pred CChhh----------HhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 413 CAQPL----------HRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 413 ~~~~~----------~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
|.+.. ...+|. ++++|+|++. ||++++++.|+++++++
T Consensus 414 ~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 414 SMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp ECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHSC
T ss_pred ecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhhc
Confidence 22210 012333 5799999995 89999999999998754
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=231.94 Aligned_cols=322 Identities=16% Similarity=0.115 Sum_probs=228.0
Q ss_pred CeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|.. ..+..++.+.+++.+.+....... . .+ ..+..+++++.+++++|.+ ++++|+|+++
T Consensus 56 g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~-~-~~-----~~~~~~~l~~~la~~~g~~---~v~~~~ggte 125 (420)
T 2pb2_A 56 GKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTS-N-VF-----TNEPALRLGRKLIDATFAE---RVLFMNSGTE 125 (420)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCC-T-TS-----CCHHHHHHHHHHHHHSSCS---EEEEESSHHH
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhccccc-C-cc-----CCHHHHHHHHHHHhhCCCC---eEEEeCCHHH
Confidence 34566653 234568899999999886532111 1 01 2355678889999999843 8999999999
Q ss_pred HHHHHHHHcCCCCC-----CCC-CEEEEcCCCCccchHHHHHHHHHcCCe------------EEEEeCCCCCCCCHHHHH
Q 012718 141 AINLVAYSWGLSNL-----KSG-DEVILTVAEHHSAIVPWQLVAQKTGAN------------LKFLNLNDDESPDLDKLK 202 (458)
Q Consensus 141 a~~~~~~~l~~~~~-----~~g-~~vl~~~~~~~s~~~~~~~~a~~~g~~------------~~~v~~~~~~~~d~~~l~ 202 (458)
|+..++.++.. . .+| ++|++.+++|++....+..+ .|.+ +..++.. |+++|+
T Consensus 126 A~~~al~~~~~--~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le 195 (420)
T 2pb2_A 126 ANETAFKLARH--YACVRHSPFKTKIIAFHNAFHGRSLFTVSV---GGQPKYSDGFGPKPADIIHVPFN-----DLHAVK 195 (420)
T ss_dssp HHHHHHHHHHH--HHHHHTCTTCCEEEEETTCCCCSSHHHHHH---SSCHHHHTTSSSCCSCEEEECTT-----CHHHHH
T ss_pred HHHHHHHHHHH--HhhhccCCCCCEEEEEeCCcCCcCHHHHHh---cCCccccccCCCCCCCeEEecCC-----CHHHHH
Confidence 99999987720 0 045 58999999999776443332 2322 5556543 899999
Q ss_pred HhhcCCceEEEEecccCcCccc-c---cHHHHHHHHHhcCcEEEEecccc-CCcc--cC--CCCCCCCcEEEecccCCCC
Q 012718 203 EMLSRKTKLVVIHHISNMLASI-L---PIEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQGLDADFLVASSHKMCG 273 (458)
Q Consensus 203 ~~l~~~~~~v~~~~~~n~tG~~-~---~l~~i~~l~~~~~~~vivD~a~~-~g~~--~~--~~~~~~~d~~~~s~~K~~g 273 (458)
+.+++++++|++++++|++|.+ + ++++|.++|+++|+++|+|++|. ++.. .+ +.....+|++ |++|.+|
T Consensus 196 ~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~ 273 (420)
T 2pb2_A 196 AVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALG 273 (420)
T ss_dssp HHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG
T ss_pred HHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eeccccc
Confidence 9999899999999999888862 3 38899999999999999999996 2211 11 1123357877 5789776
Q ss_pred C-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 012718 274 P-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 274 p-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l 352 (458)
+ ..+|++++++++++.+.+...+. ..+.+.....++.++++.+.+ +.+.++++++
T Consensus 274 ~G~~iG~~~~~~~l~~~l~~~~~~~---------------------t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~ 329 (420)
T 2pb2_A 274 GGFPVSAMLTTQEIASAFHVGSHGS---------------------TYGGNPLACAVAGAAFDIINT---PEVLQGIHTK 329 (420)
T ss_dssp TTSCCEEEEECHHHHTTCC----CC---------------------EECCCHHHHHHHHHHHHHHSS---HHHHHHHHHH
T ss_pred CCCceEEEEEhHHHHHhhcCCCcCc---------------------ccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHH
Confidence 3 23999999988777665421110 114566666666677776653 5677888888
Q ss_pred HHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 353 AKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 353 ~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
.+++.+.|+++ +.+.... ..+.++++.++.. +..++.+.|.++ ||.+.++. ++
T Consensus 330 ~~~l~~~L~~~~~~~~~~~~~~-------~~g~~~~v~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~------------~~ 389 (420)
T 2pb2_A 330 RQQFVQHLQAIDEQFDIFSDIR-------GMGLLIGAELKPKYKGRARDFLYAGAEA-GVMVLNAG------------AD 389 (420)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEE-------EETTEEEEEECGGGTTCHHHHHHHHHHT-TEECEESS------------TT
T ss_pred HHHHHHHHHHHHhcCCCeEEEE-------ecceEEEEEECCCchHHHHHHHHHHHHC-CCEEEeCC------------CC
Confidence 88888888664 3333221 1267888888643 467899999987 99998763 57
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
++|++++...+++|+++++++|+++++++
T Consensus 390 ~iRl~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 390 VMRFAPSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999988899999999999999998765
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=240.29 Aligned_cols=338 Identities=13% Similarity=0.138 Sum_probs=225.6
Q ss_pred CCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL 154 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~ 154 (458)
...++.+.+++.+.+.... .++....+..........+.+++.+++++|.++. .|++ ++|++|+..++.++ +
T Consensus 40 n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~v~~-~sGs~a~~~a~~~~----~ 113 (420)
T 3gbx_A 40 NYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA-NVQP-HSGSQANFAVYTAL----L 113 (420)
T ss_dssp CCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE-ECCC-SSHHHHHHHHHHHH----C
T ss_pred CCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc-eeEe-cCcHHHHHHHHHHh----c
Confidence 3478999999988764322 2221111111111234455577899999999753 4444 55689999999888 7
Q ss_pred CCCCEEEEcCCCCccchHHHHH-HHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHHHHHH
Q 012718 155 KSGDEVILTVAEHHSAIVPWQL-VAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEIVH 232 (458)
Q Consensus 155 ~~g~~vl~~~~~~~s~~~~~~~-~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i~~ 232 (458)
++||+|+++.++|.+....... .....+...+.++.+.++.+|++++++++++ ++++|++++++|+ ...|+++|.+
T Consensus 114 ~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~ 191 (420)
T 3gbx_A 114 QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMRE 191 (420)
T ss_dssp CTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHH
T ss_pred CCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHH
Confidence 8999999999999874322111 1122345666777777788999999999987 6899999887775 5788999999
Q ss_pred HHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCC-CCCceeEEEEec---cccccCCCccccCcceEee
Q 012718 233 WSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMC-GPTGIGFLFGKS---DLLSAMPPFLGGGEMISDV 303 (458)
Q Consensus 233 l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~---~~~~~l~~~~~g~~~~~~~ 303 (458)
+|++||+++|+|++|+.+.. +..+. .+|++++|+||++ ||.| |+++.++ ++.+.+......
T Consensus 192 l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~~------- 261 (420)
T 3gbx_A 192 IADSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVFP------- 261 (420)
T ss_dssp HHHHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC--------
T ss_pred HHHHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcCC-------
Confidence 99999999999999875543 22222 3899999999976 5665 9999987 444444322111
Q ss_pred ecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEE
Q 012718 304 FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALC 383 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v 383 (458)
...++++...+.++..++......+++++.+++.++++++.+.|.+. ++++..+.. .++++
T Consensus 262 -------------~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-----~~~~~ 322 (420)
T 3gbx_A 262 -------------SAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGT-----ENHLF 322 (420)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC-----SSSEE
T ss_pred -------------CCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCC-----CCeEE
Confidence 11346667677777666655433346788999999999999999885 888765322 26678
Q ss_pred EEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC----CCHHHHHHHHHHHHHHHHhh
Q 012718 384 SFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY----NTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 384 ~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~----~t~~di~~l~~~l~~~~~~~ 454 (458)
++.++ +.+...+.+.|.++ ||.+.+....... ...++ +..+|++++.. .+++|++++++.|++++++.
T Consensus 323 ~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~-~~~~~-~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 323 LLDLVDKNLTGKEADAALGRA-NITVNKNSVPNDP-KSPFV-TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp EEECGGGTCCHHHHHHHHHHT-TEECEEECCTTCS-SCTTT-CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCCHHHHHHHHHHC-CcEeccccCCCCc-cccCC-CcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 88775 45677888888877 9999873211100 00112 45699998754 35899999999999998653
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-31 Score=258.20 Aligned_cols=329 Identities=16% Similarity=0.163 Sum_probs=237.2
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCChh
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKNAT 139 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~g~t 139 (458)
+++.|..+... ++++.+.+++.+.+... ...+. .. ..++++.+++++ | .++ ++|++|+|++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------~~~y~--~~--~~~l~~~la~~l~~~~g~~~~~-~~v~~~~g~~ 99 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL-------VYGYT--YA--SDELLQAVLDWEKSEHQYSFDK-EDIVFVEGVV 99 (392)
Confidence 56777766654 56777888888776431 11111 11 446667777665 4 334 3899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CC--CCCCHHHHHHhhc-CCceEEEEe
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DD--ESPDLDKLKEMLS-RKTKLVVIH 215 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~--~~~d~~~l~~~l~-~~~~~v~~~ 215 (458)
+|+.+++.++ .++||+|+++.++|++.. ..++..|++++.++.+ ++ +.+|++.+++.++ .++++|+++
T Consensus 100 ~a~~~~~~~~----~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~ 171 (392)
T 3b1d_A 100 PAISIAIQAF----TKEGEAVLINSPVYPPFA----RSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLC 171 (392)
Confidence 9999999987 678999999999999653 4455668899999885 32 3479999999987 578899999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCC---CCC--CCCcEEEecccCCCCCCc--eeEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVD---VQG--LDADFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~---~~~--~~~d~~~~s~~K~~gp~g--~G~l~ 281 (458)
+++||||.++| +++|+++|+++|+++|+|++|+.... ... +.. .+.++++.|+||.+|..| +|+++
T Consensus 172 ~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 251 (392)
T 3b1d_A 172 NPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAI 251 (392)
Confidence 99999999998 88999999999999999999985321 112 222 456789999999888556 89999
Q ss_pred Eecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 012718 282 GKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360 (458)
Q Consensus 282 ~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L 360 (458)
++++ +++.+......+ ..++++.....++.++++.. ...+++++++++++++++.+.|
T Consensus 252 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l 310 (392)
T 3b1d_A 252 IENPTLCAQFKHQQLVN--------------------NHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYF 310 (392)
Confidence 8754 776665433211 11234444455555555532 2236778888899999999999
Q ss_pred hc-CCCEEEeCCCCCCcCcccc-EEEEEeCC--CChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 361 LS-IPNIRIYGPKPSEHVQRAA-LCSFNVEN--IHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 361 ~~-~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
++ ++++++..+. ++ ++++.++. .+..++.+.|. ++ ||.+.+|..+... .++++|++++.
T Consensus 311 ~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~l~~~~-gi~v~~g~~f~~~------~~~~iRi~~~~-- 374 (392)
T 3b1d_A 311 AQEAPRLKVMKPQ-------GTYLIWLDFSDYGLTDDALFTLLHDQA-KVILNRGSDYGSE------GELHARLNIAA-- 374 (392)
Confidence 87 6787765543 44 55677763 45678888886 56 9999988755321 25789999884
Q ss_pred CHHHHHHHHHHHHHHHH
Q 012718 436 TKEDVDEFIHALNETVS 452 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~ 452 (458)
+++++++++++|.++++
T Consensus 375 ~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 375 PKSLVEEICKRIVCCLP 391 (392)
Confidence 68999999999998775
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=228.93 Aligned_cols=326 Identities=12% Similarity=0.105 Sum_probs=228.4
Q ss_pred eEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 68 LVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 68 ~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
.-|+|..+ .|..++.+.+++.+.+....... .....+..+++++.+++++|. +++++++||++|
T Consensus 36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~la~~~~~---~~v~~~~gg~ea 105 (395)
T 3nx3_A 36 KKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS-------NLYYNENIAAAAKNLAKASAL---ERVFFTNSGTES 105 (395)
T ss_dssp CEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC-------TTSBCHHHHHHHHHHHHHHTC---SEEEEESSHHHH
T ss_pred CEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc-------cccCCHHHHHHHHHHHHhcCC---CeEEEeCCHHHH
Confidence 34666543 23468999999998876532111 011245567888999999983 399999999999
Q ss_pred HHHHHHHcCCCCC-----CCCCEEEEcCCCCccchHHHHHHH---------HHcCCeEEEEeCCCCCCCCHHHHHHhhcC
Q 012718 142 INLVAYSWGLSNL-----KSGDEVILTVAEHHSAIVPWQLVA---------QKTGANLKFLNLNDDESPDLDKLKEMLSR 207 (458)
Q Consensus 142 ~~~~~~~l~~~~~-----~~g~~vl~~~~~~~s~~~~~~~~a---------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 207 (458)
+..++.++.. . .++++|++.++.|++......... ...+.++..++.+ |+++|++++++
T Consensus 106 ~~~al~~~~~--~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~ 178 (395)
T 3nx3_A 106 IEGAMKTARK--YAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNE 178 (395)
T ss_dssp HHHHHHHHHH--HHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCT
T ss_pred HHHHHHHHHH--HhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccC
Confidence 9999887621 1 457899999999997653322210 0112456666654 89999999998
Q ss_pred CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecccCCCCC-Cce
Q 012718 208 KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCGP-TGI 277 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp-~g~ 277 (458)
++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|. +|... .+.....+|+++ ++|.+++ .++
T Consensus 179 ~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t--~sK~~~~G~~~ 256 (395)
T 3nx3_A 179 KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMT--SAKALGCGLSV 256 (395)
T ss_dssp TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGTTTSCC
T ss_pred CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEE--ecccccCCCce
Confidence 9999999999999999988 9999999999999999999987 43221 122233467664 6796553 348
Q ss_pred eEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKY 355 (458)
Q Consensus 278 G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~ 355 (458)
|++++++++ ++.+.+...+.. .+.+....++..++++.+.... .+++++....+.+.
T Consensus 257 G~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~ 315 (395)
T 3nx3_A 257 GAFVINQKVASNSLEAGDHGST---------------------YGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQS 315 (395)
T ss_dssp EEEEECHHHHHHHSCTTCCSSC---------------------BSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred EEEEEchhhhhhhcCCcccCCC---------------------CCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999988 777765432211 2356666667777777665432 23334444444444
Q ss_pred HHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC
Q 012718 356 LYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY 434 (458)
Q Consensus 356 l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~ 434 (458)
+.+.+..++.+..... .+.++++.+++. +..++.+.|.++ ||.++++. ++++|++++..
T Consensus 316 l~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------------~~~iRi~~~~~ 375 (395)
T 3nx3_A 316 LDELINEFDFCKKRKG-------LGFMQGLSLDKSVKVAKVIQKCQEN-ALLLISCG------------ENDLRFLPPLI 375 (395)
T ss_dssp HHHHHHHCTTEEEEEE-------ETTEEEEEECTTSCHHHHHHHHHHT-TEECEEET------------TTEEEECCCTT
T ss_pred HHHHHHhCCCeEEEEe-------EEEEEEEEeCCcchHHHHHHHHHHC-CCEEecCC------------CCEEEEECCCC
Confidence 4444444555543322 267888988753 677899999988 99998764 67999999988
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 012718 435 NTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 435 ~t~~di~~l~~~l~~~~~~ 453 (458)
.+++|+++++++|++++++
T Consensus 376 ~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 376 LQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999998864
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=228.95 Aligned_cols=329 Identities=16% Similarity=0.188 Sum_probs=223.6
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|..+ .+..++.+.+++.+.+..... .... + ..+...++++.+++++|.+ +|+|++|+++
T Consensus 64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~-~~~~-----~-~~~~~~~l~~~la~~~g~~---~v~~~~sGse 133 (433)
T 1z7d_A 64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI-CSRA-----F-FSVPLGICERYLTNLLGYD---KVLMMNTGAE 133 (433)
T ss_dssp CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC-CCTT-----S-EEHHHHHHHHHHHHHHTCS---EEEEESSHHH
T ss_pred CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCC-ccCC-----c-CCHHHHHHHHHHHhhcCCC---eEEEeCCHHH
Confidence 345666433 233788999999998765321 1111 1 2345567889999999743 8999999999
Q ss_pred HHHHHHHHcCC-----CCCCCC-CEEEEcCCCCccchHHHHHHHHH----cC-----CeEEEEeCCCCCCCCHHHHHHhh
Q 012718 141 AINLVAYSWGL-----SNLKSG-DEVILTVAEHHSAIVPWQLVAQK----TG-----ANLKFLNLNDDESPDLDKLKEML 205 (458)
Q Consensus 141 a~~~~~~~l~~-----~~~~~g-~~vl~~~~~~~s~~~~~~~~a~~----~g-----~~~~~v~~~~~~~~d~~~l~~~l 205 (458)
|+..++..+.. ..+.+| ++|++.+++|++.......+... .+ ..+..+|.. |++++++.+
T Consensus 134 A~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l 208 (433)
T 1z7d_A 134 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEEL 208 (433)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHh
Confidence 99999987520 012456 89999999999765433322110 01 345556543 899999999
Q ss_pred -cCCceEEEEecccCcCcccc----cHHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecccCCCCCC
Q 012718 206 -SRKTKLVVIHHISNMLASIL----PIEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCGPT 275 (458)
Q Consensus 206 -~~~~~~v~~~~~~n~tG~~~----~l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp~ 275 (458)
.+++++|+++.+++++|.+. ++++|.++|+++|+++|+|++|. ++... .+.....+|++ |++|.+|+.
T Consensus 209 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G 286 (433)
T 1z7d_A 209 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGG 286 (433)
T ss_dssp TSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTT
T ss_pred CCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccCC
Confidence 56889999998888899876 59999999999999999999997 32211 11123357876 678977642
Q ss_pred --ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012718 276 --GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353 (458)
Q Consensus 276 --g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~ 353 (458)
.+|++++++++++.+.+...+. ..+.+....+++.++++.+.+. .+.++.+++.
T Consensus 287 ~~~~G~v~~~~~~~~~l~~~~~~~---------------------t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~ 342 (433)
T 1z7d_A 287 HYPISAVLANDDIMLVIKPGEHGS---------------------TYGGNPLAASICVEALNVLINE---KLCENAEKLG 342 (433)
T ss_dssp SSCCEEEEECHHHHTTCCTTCCCC---------------------TTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred CCCeEEEEECHHHHhhhccccccc---------------------cCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHH
Confidence 3999999998877765421110 1245666677777788877653 4566777778
Q ss_pred HHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCCC--ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeE
Q 012718 354 KYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVENI--HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASA 427 (458)
Q Consensus 354 ~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~l 427 (458)
+++.+.|+++ +.+.... ..+.++++.+++. +..++.+.|.++ ||.+.++. .+++
T Consensus 343 ~~l~~~L~~l~~~~~~~~~~~-------~~g~~~~i~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------------~~~i 402 (433)
T 1z7d_A 343 GPFLENLKRELKDSKIVRDVR-------GKGLLCAIEFKNELVNVLDICLKLKEN-GLITRDVH------------DKTI 402 (433)
T ss_dssp HHHHHHHHHHHTTCTTEEEEE-------EETTEEEEEECTTTCCHHHHHHHHHHT-TEECCEET------------TTEE
T ss_pred HHHHHHHHHHHHhCCCeEEEE-------eeeeEEEEEEccChhHHHHHHHHHHHC-CeEEecCC------------CCEE
Confidence 8887777653 3322211 2267888988753 467899999988 99998642 5789
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 428 RASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 428 Ris~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
|++++..++++|+++++++|+++++++.+
T Consensus 403 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 431 (433)
T 1z7d_A 403 RLTPPLCITKEQLDECTEIIVKTVKFFDE 431 (433)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred EEECCcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999889999999999999999887643
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=234.07 Aligned_cols=318 Identities=16% Similarity=0.172 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE-
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL- 188 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v- 188 (458)
....+++++.+++++|.+ ..+++++|++|+..++.++ +++||+|+++.++|++....+..+++..|++++.+
T Consensus 57 ~~~~~~l~~~la~~~g~~---~~v~~~sGt~A~~~~l~~~----~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGK---AALATASGHAAQFLALTTL----AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS 129 (421)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC
T ss_pred ChHHHHHHHHHHHHhCCC---ceEEecCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 356678999999999986 4456666799999999987 67999999999999998877766667889999998
Q ss_pred eCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccc-cCCcccCCCCCCCCcEEEec
Q 012718 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ-SVPHMVVDVQGLDADFLVAS 267 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~-~~g~~~~~~~~~~~d~~~~s 267 (458)
+.+ |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++| +.|.. ......++|++++|
T Consensus 130 ~~~-----d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~-~~~~~~~~Di~~~s 203 (421)
T 2ctz_A 130 REE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-LRPLAWGAALVTHS 203 (421)
T ss_dssp TTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-CCGGGGTCSEEEEE
T ss_pred CCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc-CCccccCCeEEEEC
Confidence 764 899999999999999999999999999999999999999999999999999 87742 12224579999999
Q ss_pred ccCCCCCCc--eeEEEEec---cc----cccCCCccccCcceEee-ecCCCCCCCCCCccC----CC-CCCHHHHHHHHH
Q 012718 268 SHKMCGPTG--IGFLFGKS---DL----LSAMPPFLGGGEMISDV-FLDHSTFADPPSRFE----AG-TPAIGEAIGLGA 332 (458)
Q Consensus 268 ~~K~~gp~g--~G~l~~~~---~~----~~~l~~~~~g~~~~~~~-~~~~~~~~~~~~~~~----~g-t~~~~~~~~l~~ 332 (458)
+||+++++| +|++++.+ ++ ++.+.+...++...... ......+.. ..+++ .| ..+....+....
T Consensus 204 ~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~-~~r~~~~~~~g~~~~~~~a~~~~~ 282 (421)
T 2ctz_A 204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIV-KARVDGLRDQGQALGPFEAWVVLL 282 (421)
T ss_dssp TTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHH-HHHHTHHHHHCCCCCHHHHHHHHH
T ss_pred CcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHH-HHHHHHHHhcCCCCCHHHHHHHHc
Confidence 999776544 67777752 22 22333332222211000 000000000 00111 11 333333223223
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC-CCCCCc-----------CccccEEEEEeCCCChHHHHHHHh
Q 012718 333 AIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYG-PKPSEH-----------VQRAALCSFNVENIHPTDIATLLD 400 (458)
Q Consensus 333 al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~-~~~~~~-----------~~~~~~v~~~~~~~~~~~~~~~l~ 400 (458)
.++. +....++..++++++.+.|.++|+++.+. +..... ..++++++|.+.+. ..+..+.+.
T Consensus 283 ~l~~-----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~-~~~~~~~~~ 356 (421)
T 2ctz_A 283 GMET-----LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGG-YEAAKRFIS 356 (421)
T ss_dssp HHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTH-HHHHHHHHH
T ss_pred Ccch-----HHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCC-HHHHHHHHH
Confidence 3332 33344555689999999999999998763 221000 24577999999852 233333333
Q ss_pred hh--cCeEeccCCCCC------hhh--------HhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 401 QQ--YGVATRSGHHCA------QPL--------HRYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 401 ~~--~gi~~~~g~~~~------~~~--------~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+. +++.++.|..++ ... ...+|. ++.||+|++. +|++.+++.|++++
T Consensus 357 ~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e~~~~li~~l~~al 420 (421)
T 2ctz_A 357 RLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----EHVEDLKAELKEAL 420 (421)
T ss_dssp TCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHT
T ss_pred hCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHh
Confidence 22 245556563222 111 334454 5899999997 57777777777665
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=238.26 Aligned_cols=327 Identities=14% Similarity=0.068 Sum_probs=222.8
Q ss_pred CeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-----CCC--cEE
Q 012718 67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSG--EIV 133 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~--~v~ 133 (458)
+++.|..| ...++++.+.+++.+.+...... . + .......++|++++++++.. .++ +|+
T Consensus 50 ~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~--~--Y----~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~ 121 (420)
T 4f4e_A 50 TKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPR--G--Y----LPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTA 121 (420)
T ss_dssp SCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCC--C--C----CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCC--C--C----CCCCCcHHHHHHHHHHhcCCCccccccCceEEE
Confidence 45566555 44466699999999988651110 0 0 11223457888888887542 234 799
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC--CCCCCCCHHHHHHhhc---CC
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--NDDESPDLDKLKEMLS---RK 208 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~--~~~~~~d~~~l~~~l~---~~ 208 (458)
+|+|+|+|+.+++..+. .+++||+|++++|+|++ +...++..|++++.++. ++++.+|++.+++.++ ++
T Consensus 122 ~t~G~t~al~~~~~~~~--~~~~gd~Vlv~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 195 (420)
T 4f4e_A 122 QALGGTGALKIGADFLR--TLNPKAKVAISDPSWEN----HRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPG 195 (420)
T ss_dssp EEEHHHHHHHHHHHHHH--HHCTTCCEEEEESCCHH----HHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTT
T ss_pred ECCccHHHHHHHHHHHH--HhCCCCEEEEeCCCcHh----HHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCC
Confidence 99999999999954221 15799999999999994 45666778999999998 3467889999999998 57
Q ss_pred ceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcccC-----C---C-CCCCCcEEEecccCCCCCCc
Q 012718 209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVV-----D---V-QGLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~-----~---~-~~~~~d~~~~s~~K~~gp~g 276 (458)
++++++++++||||.+++ +++|+++|+++|+++|+|++|+...... . + ...+.++++.|+||.+|++|
T Consensus 196 ~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 275 (420)
T 4f4e_A 196 TIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYG 275 (420)
T ss_dssp CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcC
Confidence 899999999999999988 6688999999999999999987433210 0 1 12357899999999999888
Q ss_pred --eeEEEEe---ccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-----HhCHHHHH
Q 012718 277 --IGFLFGK---SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIGMQKIH 346 (458)
Q Consensus 277 --~G~l~~~---~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~~~ 346 (458)
+|++++. ++.++.+....... .+...++++.....++...+.... ...+++++
T Consensus 276 ~RiG~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 338 (420)
T 4f4e_A 276 ERVGALSIITDSKDEAARVLSQLKRV-----------------IRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMR 338 (420)
T ss_dssp GCEEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHHHH-----------------HhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8998752 23222211000000 001112333334444434443210 12267888
Q ss_pred HHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCC
Q 012718 347 AYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV 423 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~ 423 (458)
++++++++++.+.|+++ +++++..+. .+.++++.+ +...+.+.+.++ ||.+.++
T Consensus 339 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~g~~~~~~~---~~~~~~~~l~~~-gI~v~~~------------- 395 (420)
T 4f4e_A 339 DRIRAMRNGLVERLKAAGIERDFSFINAQ------RGMFSYSGL---TSAQVDRLREEF-GIYAVST------------- 395 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCTHHHHS------CSSEEECCC---CHHHHHHHHHHH-CEECCTT-------------
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceeECCC------ccEEEEeCC---CHHHHHHHHHhC-CEEecCC-------------
Confidence 99999999999999876 355544333 144555544 456666677777 9998753
Q ss_pred CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 424 NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 424 ~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.|++++. .+.+++++++++|++++
T Consensus 396 ---~Ris~~~-~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 396 ---GRICVAA-LNTRNLDVVANAIAAVL 419 (420)
T ss_dssp ---SEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred ---CeEEEec-CCHHHHHHHHHHHHHHh
Confidence 2999975 46678999999999876
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=239.90 Aligned_cols=328 Identities=11% Similarity=0.046 Sum_probs=222.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHH-HHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-----CCC--c
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQN-YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSG--E 131 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~--~ 131 (458)
++++.|..| ...+.++.+.+++.+ .+...... .+ .......++|+.++++++.. ..+ +
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~----~y----~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~ 97 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGAS----LY----LPMEGLNCYRHAIAPLLFGADHPVLKQQRVA 97 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCC----CC----CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccc----cC----CCCCchHHHHHHHHHHHhcCCcccccccceE
Confidence 345666555 444566999999998 66531110 00 11223457888888888652 234 7
Q ss_pred EEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC--CCCCCCCHHHHHHhhc---
Q 012718 132 IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--NDDESPDLDKLKEMLS--- 206 (458)
Q Consensus 132 v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~--~~~~~~d~~~l~~~l~--- 206 (458)
|++|+|+|+|+++++..+. .+++||+|+++.|+|++ +...++..|++++.++. ++++.+|++++++.++
T Consensus 98 i~~t~g~~~a~~~~~~~~~--~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 171 (397)
T 3fsl_A 98 TIQTLGGSGALKVGADFLK--RYFPESGVWVSDPTWEN----HVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQ 171 (397)
T ss_dssp EEEESHHHHHHHHHHHHHH--HHCTTCCEEEESSCCHH----HHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCC
T ss_pred EEEcCCcHHHHHHHHHHHH--hcCCCCeEEEeCCCchh----HHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCC
Confidence 8999999999999954321 15799999999999994 45666778999999998 3567889999999998
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc-----C---CC-CCCCCcEEEecccCCCCC
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----V---DV-QGLDADFLVASSHKMCGP 274 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-----~---~~-~~~~~d~~~~s~~K~~gp 274 (458)
++++++++++++||||.+++ +++|+++|+++|+++|+|++|+..... . .+ ...+.++++.|+||.+|+
T Consensus 172 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 251 (397)
T 3fsl_A 172 AGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSL 251 (397)
T ss_dssp TTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTC
T ss_pred CCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccC
Confidence 57799999999999999988 558999999999999999999854321 0 11 233467889999999998
Q ss_pred Cc--eeEEEEec---cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-----HHhCHHH
Q 012718 275 TG--IGFLFGKS---DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-----STIGMQK 344 (458)
Q Consensus 275 ~g--~G~l~~~~---~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-----~~~g~~~ 344 (458)
+| +|++++.. +.++.+....... .+...++++.....++..++... ....+++
T Consensus 252 ~G~riG~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 314 (397)
T 3fsl_A 252 YGERVGGLSVMCEDAEAAGRVLGQLKAT-----------------VRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEE 314 (397)
T ss_dssp GGGCCEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cCCCeeEEEEecCCHHHHHHHHHHHHHH-----------------HHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 78 89998632 2222221100000 00112233433444444344321 0223678
Q ss_pred HHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhc
Q 012718 345 IHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~ 421 (458)
.+++++++++++.+.|++++ ++++..+. .+.++++.+ +...+.+.+.++ ||.+.+|.
T Consensus 315 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~l~~~-gi~v~~g~---------- 374 (397)
T 3fsl_A 315 MRTRILAMRQELVKVLSTEMPERNFDYLLNQ------RGMFSYTGL---SAAQVDRLREEF-GVYLIASG---------- 374 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCCTHHHHC------CSSEEECCC---CHHHHHHHHHTT-CEECCTTC----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeecCC------ceEEEecCC---CHHHHHHHHHhC-CEEECCCC----------
Confidence 88999999999999998763 45544332 144555544 355666677766 99998652
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
|++++. .+++||++++++|++++
T Consensus 375 ------Ris~~~-~~~~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 375 ------RMCVAG-LNTANVQRVAKAFAAVM 397 (397)
T ss_dssp ------EEEGGG-CCTTTHHHHHHHHHHHC
T ss_pred ------eEEEEe-cCHhhHHHHHHHHHhhC
Confidence 999975 35688999999998763
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=231.25 Aligned_cols=324 Identities=15% Similarity=0.101 Sum_probs=218.4
Q ss_pred CeEEecCC-CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 67 KLVYLDNA-ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 67 ~~i~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
+++.+..+ +..++++.+.+++..+ + ++ ....+.+++.+++++|+++++++++++|+|+|+..+
T Consensus 29 ~v~~~~~~~~~~~~~~~v~~a~~~~----------~----~~--~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~ 92 (374)
T 2aeu_A 29 ALYDLSGLSGGFLIDEKDKALLNTY----------I----GS--SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILAT 92 (374)
T ss_dssp GCEECSSCCCCCCCCHHHHHHHTST----------T----HH--HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred ceeeecccCCCCCCCHHHHHHHHHh----------c----Cc--hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHH
Confidence 34434433 3458889998888511 1 01 122356777778899985334899999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceE-EEEecccCcCc-c
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKL-VVIHHISNMLA-S 223 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~-v~~~~~~n~tG-~ 223 (458)
+.++ +||+|+++.++|++....+. .++..|++++.+ .|++++++. ++++++ |++++++|||| .
T Consensus 93 ~~~~------~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v-------~d~~~l~~~-~~~~~~~v~~~~p~nptG~~ 157 (374)
T 2aeu_A 93 ILAL------KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES-------DKVGEILNK-IDKDTLVIITGSTMDLKVIE 157 (374)
T ss_dssp HHHH------CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE-------SCHHHHHTT-CCTTEEEEEECBCTTSCBCC
T ss_pred HHhC------CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe-------CCHHHHHhc-CCCccEEEEEccCCCCCCCC
Confidence 9865 79999999999988665444 667789999888 288999988 778999 99999999999 8
Q ss_pred cccHHHHHHHHHhcCcEEEEeccccCCcc-cC-C--CCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcc
Q 012718 224 ILPIEEIVHWSHDVGAKVLVDACQSVPHM-VV-D--VQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEM 299 (458)
Q Consensus 224 ~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~-~--~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~ 299 (458)
..++++|.++|+++|+++|+|++|+.+.. +. . ....++|++++|+||++++.++|++++++++++.+......
T Consensus 158 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~~~~~~l~~~~~~--- 234 (374)
T 2aeu_A 158 LENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTK--- 234 (374)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHT---
T ss_pred cccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECHHHHHHHHHhhcc---
Confidence 88899999999999999999999986531 11 1 11246899999999976655799999999887766533210
Q ss_pred eEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH----HHHHHHHHhcC---CCEEEeCCC
Q 012718 300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL----AKYLYENLLSI---PNIRIYGPK 372 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l----~~~l~~~L~~~---~~~~~~~~~ 372 (458)
+ .++++.....++..+++.+....+.+..+..+.+ .+.+.+.|..+ +++.+...+
T Consensus 235 -----------------~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~ 296 (374)
T 2aeu_A 235 -----------------F-GLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTP 296 (374)
T ss_dssp -----------------T-TCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECS
T ss_pred -----------------c-cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCC
Confidence 1 1245665666666666654211123333444444 46666766654 356653332
Q ss_pred CCCcCccccEEEE-EeCCC-C---hHHHHHHH-hhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC-CCCHHHHHHHHH
Q 012718 373 PSEHVQRAALCSF-NVENI-H---PTDIATLL-DQQYGVATRSGHHCAQPLHRYLGVNASARASLHF-YNTKEDVDEFIH 445 (458)
Q Consensus 373 ~~~~~~~~~~v~~-~~~~~-~---~~~~~~~l-~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~-~~t~~di~~l~~ 445 (458)
. +.+++. ..... . ..+++..+ .++ ||.+.+|..+. +..+++||+++. ...+.+++++.+
T Consensus 297 -~-----g~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gV~v~~g~~~~-------~~~~~lRi~~~~~~~~~~~l~~l~~ 362 (374)
T 2aeu_A 297 -T-----GFVIKRVYKDDTINIKKLIEIGFNLLKNY-GIITITVAGMP-------GASKSLRIDLTSRDAERIDDNYIIK 362 (374)
T ss_dssp -S-----EEEEEEEESSHHHHHHHHHHHHHHHHHHH-CEECSTTSSSC-------SSCCSEEEETTSGGGGGSCHHHHHH
T ss_pred -c-----eEEEEeecccccccccchHHHHHHHHHhC-CEEEecCCCCC-------CCCCeEEEEcCCchHHHHHHHHHHH
Confidence 1 444333 23210 0 11255444 456 99999875321 125689999874 223345999999
Q ss_pred HHHHHHHhhhc
Q 012718 446 ALNETVSFFNV 456 (458)
Q Consensus 446 ~l~~~~~~~~~ 456 (458)
.|+++++++.+
T Consensus 363 ~l~~~l~~~~~ 373 (374)
T 2aeu_A 363 AIVESIKMAFK 373 (374)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999987653
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-26 Score=226.06 Aligned_cols=328 Identities=12% Similarity=0.127 Sum_probs=230.8
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|..+ .+..++.+.+++.+.+..... .... + ..+..+++++.+++++|.+ +++|++|+++
T Consensus 75 g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~-~~~~-~-----~~~~~~~l~~~la~~~g~~---~v~~~~sGse 144 (439)
T 2oat_A 75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTL-TSRA-F-----YNNVLGEYEEYITKLFNYH---KVLPMNTGVE 144 (439)
T ss_dssp CCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSC-CCTT-S-----EESSHHHHHHHHHHHHTCS---EEEEESSHHH
T ss_pred CCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCc-ccCc-c-----CCHHHHHHHHHHHHhcCCC---EEEEeCCHHH
Confidence 445666543 222788999999998765321 1111 1 1234557888999998743 8999999999
Q ss_pred HHHHHHHHcCC-----CCCCCC-CEEEEcCCCCccchHHHHHHHH----HcC-----CeEEEEeCCCCCCCCHHHHHHhh
Q 012718 141 AINLVAYSWGL-----SNLKSG-DEVILTVAEHHSAIVPWQLVAQ----KTG-----ANLKFLNLNDDESPDLDKLKEML 205 (458)
Q Consensus 141 a~~~~~~~l~~-----~~~~~g-~~vl~~~~~~~s~~~~~~~~a~----~~g-----~~~~~v~~~~~~~~d~~~l~~~l 205 (458)
|+..++.++.. ....+| ++|++.+++|++.......+.. +.+ ..+..+|.. |++++++.+
T Consensus 145 A~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l 219 (439)
T 2oat_A 145 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERAL 219 (439)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHh
Confidence 99999987620 012356 8999999999977543322210 011 456667654 899999999
Q ss_pred c-CCceEEEEecccCcCcccc----cHHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecccCCCCCC
Q 012718 206 S-RKTKLVVIHHISNMLASIL----PIEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCGPT 275 (458)
Q Consensus 206 ~-~~~~~v~~~~~~n~tG~~~----~l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp~ 275 (458)
+ +++++|+++.+++++|.+. ++++|.++|++||+++|+|++|. ++... .+.....+|++ |++|.+|+.
T Consensus 220 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G 297 (439)
T 2oat_A 220 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSGG 297 (439)
T ss_dssp TSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTT
T ss_pred CCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccCC
Confidence 4 6788999988888899877 59999999999999999999995 32211 12223357876 788976652
Q ss_pred --ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012718 276 --GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELA 353 (458)
Q Consensus 276 --g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~ 353 (458)
.+|++++++++++.+.+...+ . ..+.+....+++.++++.+.+. .+.++.+++.
T Consensus 298 ~~~~G~v~~~~~~~~~l~~~~~~--------------------~-t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~ 353 (439)
T 2oat_A 298 LYPVSAVLCDDDIMLTIKPGEHG--------------------S-TYGGNPLGCRVAIAALEVLEEE---NLAENADKLG 353 (439)
T ss_dssp SSCCEEEEECHHHHTTSCTTSSC--------------------C-SSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred CCCeEEEEECHHHHhccCCCCcc--------------------c-CCCcCHHHHHHHHHHHHHHhhh---hHHHHHHHHH
Confidence 399999999887776542111 0 1245666667777788877652 5678888999
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
+++.+.|+++ ++.+.... ...+.++++.+++ .+..++.+.|.++ ||.+.++. ++++|++
T Consensus 354 ~~l~~~L~~l-~~~~~~~~----~~~g~~~~v~l~~~~~~~~~~l~~~l~~~-Gv~v~~~~------------~~~iRi~ 415 (439)
T 2oat_A 354 IILRNELMKL-PSDVVTAV----RGKGLLNAIVIKETKDWDAWKVCLRLRDN-GLLAKPTH------------GDIIRFA 415 (439)
T ss_dssp HHHHHHHTTS-CTTTEEEE----EEETTEEEEEECCCSSCCHHHHHHHHHHT-TEECCBSS------------SSEEEEC
T ss_pred HHHHHHHHHh-cCCCcEEE----EeeeeEEEEEEecCccHHHHHHHHHHHHC-CeEEecCC------------CCEEEEE
Confidence 9999999876 32111111 1236788888874 3467899999988 99998642 5789999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHh
Q 012718 431 LHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++..++++|+++++++|++++++
T Consensus 416 ~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 416 PPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CccCCCHHHHHHHHHHHHHHHHh
Confidence 99889999999999999998865
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=230.24 Aligned_cols=315 Identities=18% Similarity=0.212 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+++++.+++++|.+ ..++++||++|+..++.++ +++||.|+++++.|++....+...++..|++++.++
T Consensus 81 ~p~~~~le~~lA~l~g~~---~~v~~~sG~~Ai~~al~al----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~ 153 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGAL---GVLALGSGMAAISTAILTL----ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVD 153 (430)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred CHHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHH----hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 456678999999999986 5677778899999999988 789999999999999887766667788899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.+ |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+.. .+....++|+++.|++
T Consensus 154 ~~-----d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-~~~~~~g~div~~S~s 227 (430)
T 3ri6_A 154 VM-----DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-LEAKRLGVDIEVLSST 227 (430)
T ss_dssp TT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-CCGGGGTCSEEEEECC
T ss_pred CC-----CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChHHcCCEEEEECCc
Confidence 76 89999999999999999999999999999999999999999999999999998876 4445678999999999
Q ss_pred CCCCCCc---eeEEEEecc-ccccCCCccc---cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 270 KMCGPTG---IGFLFGKSD-LLSAMPPFLG---GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 270 K~~gp~g---~G~l~~~~~-~~~~l~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
|++|++| .|+++.+.+ .+..-..+.. ..+.. .+... ......+...++.+....+.+...++. +
T Consensus 228 K~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~--~~i~~--~~~~~~~~~g~~~~~~~a~l~l~~l~~-----l 298 (430)
T 3ri6_A 228 KFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPM--AFLYK--ARKEVFQNLGPSLSPHNAYLQSLGLET-----M 298 (430)
T ss_dssp CEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGG--HHHHH--HHHTHHHHHCCCCCHHHHHHHHHHHHH-----H
T ss_pred ccccCCCCceEEEEEECChHHhhhccchhhhhhhhchh--hHHHH--HHHHHHHhcCCCCCHHHHHHHHhhhhh-----H
Confidence 9887664 566554332 1110000000 00000 00000 000000001223333222222223333 2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCcC---------cccc-EEEEEeCC-CChHHHHHHHhhhcCeEeccC
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSEHV---------QRAA-LCSFNVEN-IHPTDIATLLDQQYGVATRSG 410 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~~---------~~~~-~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g 410 (458)
....++..++++++.+.|++.|+++ +..|.-.... ..++ +++|.+++ ....++.+.+... ++.++.|
T Consensus 299 ~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~-~~~~s~G 377 (430)
T 3ri6_A 299 ALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLI-RRATNIH 377 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSS-EECSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcc-eecCCCC
Confidence 3445666788899999999988877 4433311100 2367 99999983 1223444444433 5556666
Q ss_pred CCCCh------hhHh--------hcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 411 HHCAQ------PLHR--------YLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 411 ~~~~~------~~~~--------~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
...+- ..+. ..|. ++.||+|++. ||++.+++.|++++
T Consensus 378 ~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 378 DNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI----EEIEDLKEDILQAL 429 (430)
T ss_dssp CSSCEEECTGGGC---------CGGGSCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 54432 1111 1232 6899999997 77777787777765
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=224.60 Aligned_cols=325 Identities=12% Similarity=0.073 Sum_probs=225.9
Q ss_pred CeEEecCCC------CCCC-cHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCCh
Q 012718 67 KLVYLDNAA------TSQK-PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNA 138 (458)
Q Consensus 67 ~~i~l~~~~------~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~ 138 (458)
+..|+|..+ .++. ++.+.+++.+.+...... +... + ......++++.+++++|.+ ++ +|+||+|+
T Consensus 41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~---~~~~--~-~~~~~~~l~~~la~~~~~~~~~-~v~~~~gg 113 (419)
T 2eo5_A 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHA---AAND--F-YNIPQLELAKKLVTYSPGNFQK-KVFFSNSG 113 (419)
T ss_dssp SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCC---SCSC--S-CCHHHHHHHHHHHHHSSCSSCE-EEEEESSH
T ss_pred CCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccc---cccc--c-CCHHHHHHHHHHHHhCCCCcCC-EEEEeCch
Confidence 345666543 2233 799999999988653211 1000 0 1233467888999999987 44 99999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-----HcC-----CeEEEEeCCCCCC-------------
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KTG-----ANLKFLNLNDDES------------- 195 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-----~~g-----~~~~~v~~~~~~~------------- 195 (458)
++|+..++.++.. . +|++|++.++.|++.......+.. +.+ ..++.++.+.++.
T Consensus 114 ~ea~~~ai~~~~~--~-~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~ 190 (419)
T 2eo5_A 114 TEAIEASIKVVKN--T-GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSE 190 (419)
T ss_dssp HHHHHHHHHHHHT--T-SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHH
T ss_pred HHHHHHHHHHHHH--h-hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchh
Confidence 9999999987521 1 289999999999976544333211 111 3577888764422
Q ss_pred ---CCHHHHH-Hhhc-----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCC
Q 012718 196 ---PDLDKLK-EMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQ 257 (458)
Q Consensus 196 ---~d~~~l~-~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~ 257 (458)
+|+++|+ +.++ +++++|+++..+|+||.+.+ +++|.++|++||+++|+|++|. ++... .+..
T Consensus 191 ~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~ 270 (419)
T 2eo5_A 191 LVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENF 270 (419)
T ss_dssp HHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred hHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhc
Confidence 3688999 8886 45678888777788998776 9999999999999999999998 44321 1222
Q ss_pred CCCCcEEEecccCCCCC--CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH
Q 012718 258 GLDADFLVASSHKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID 335 (458)
Q Consensus 258 ~~~~d~~~~s~~K~~gp--~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 335 (458)
...+|++ |++|.+|+ -++|+++++++++ .+ .... ....+.+...+.++.++++
T Consensus 271 ~~~~d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~---------------------~~t~~~n~~~~~aa~aal~ 325 (419)
T 2eo5_A 271 NTVPDVI--TLAKALGGGIMPIGATIFRKDLD-FK-PGMH---------------------SNTFGGNALACAIGSKVID 325 (419)
T ss_dssp TCCCSEE--EECGGGGTTTSCCEEEEEEGGGC-CC----------------------------CCCCCHHHHHHHHHHHH
T ss_pred CCCCCEE--EecccccCCccceEEEEEchHhh-cC-Cccc---------------------CCCCCCCHHHHHHHHHHHH
Confidence 3346766 68896654 4589999999876 55 2111 0112456667777777777
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC-C-CChHHHHHHHhhhcCeEeccCCCC
Q 012718 336 YLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-N-IHPTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
.+.+ +.++++++++++.+.|.++ +... . ..+.++++.+. + .... +.+.|.++ ||.++++.
T Consensus 326 ~~~~-----~~~~~~~~~~~l~~~L~~~--~~~~--~-----~~g~~~~i~~~~~~~~~~-~~~~l~~~-Gv~v~~~~-- 387 (419)
T 2eo5_A 326 IVKD-----LLPHVNEIGKIFAEELQGL--ADDV--R-----GIGLAWGLEYNEKKVRDR-IIGESFKR-GLLLLPAG-- 387 (419)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHTTS--SSEE--E-----EETTEEEEECSCHHHHHH-HHHHHHHT-TEECEEET--
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHh--hhhe--E-----eeeEEEEEEEecCccHHH-HHHHHHHC-CCEEecCC--
Confidence 6543 7788889999999999875 1111 1 22678888873 2 1244 88888877 99998753
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++||+++...+++|+++++++|+++++++
T Consensus 388 ----------~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 388 ----------RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp ----------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 5689999998899999999999999998764
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=237.63 Aligned_cols=331 Identities=14% Similarity=0.040 Sum_probs=227.3
Q ss_pred CCeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CC-----CCCCcEE
Q 012718 66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NA-----SDSGEIV 133 (458)
Q Consensus 66 ~~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~-----~~~~~v~ 133 (458)
++++.|..+.. .++++.+.+++.+.+... ...+. + .......++|+++++++ +. +++ +|+
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~--y----~~~~g~~~lr~~la~~~~~~~~~~~~~~-~v~ 101 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNS-SLNHE--Y----LPILGLAEFRTCASRLALGDDSPALQEK-RVG 101 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCT-TCCCC--C----CCTTCCHHHHHHHHHHHHCTTCHHHHTT-CEE
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHHhhhCh-hhccC--C----CCCCCCHHHHHHHHHHHhcCCCCccCCC-cEE
Confidence 55677777653 356688889888775221 01110 0 11223458889999999 43 343 899
Q ss_pred E--eCChhHHHHHHHHHcCCCCCCCC-----CEEEEcCCCCccchHHHHHHHHHcCCe-EEEEeCC--CCCCCCHHHHHH
Q 012718 134 F--TKNATEAINLVAYSWGLSNLKSG-----DEVILTVAEHHSAIVPWQLVAQKTGAN-LKFLNLN--DDESPDLDKLKE 203 (458)
Q Consensus 134 ~--t~g~t~a~~~~~~~l~~~~~~~g-----~~vl~~~~~~~s~~~~~~~~a~~~g~~-~~~v~~~--~~~~~d~~~l~~ 203 (458)
+ |+|+++|+.+++..+. .+++| |+|+++.++|++ +...++..|++ ++.++.+ +++.+|++++++
T Consensus 102 ~~~t~gg~~a~~~~~~~~~--~~~~g~~~~~d~Vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~ 175 (412)
T 1ajs_A 102 GVQSLGGTGALRIGAEFLA--RWYNGTNNKDTPVYVSSPTWEN----HNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLS 175 (412)
T ss_dssp EEEEEHHHHHHHHHHHHHH--HHSSSSSCCCSCEEEEESCCTH----HHHHHHHTTCSCEEEEECEETTTTEECHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHH--HhCcCcCCCCCeEEEcCCCcHH----HHHHHHHcCCceeEEEeeecCCCCccCHHHHHH
Confidence 9 9999999999965321 14688 999999999995 45666778999 9999984 456789999999
Q ss_pred hhcC---CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc--------cCC-CC-CCCCcEEEec
Q 012718 204 MLSR---KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------VVD-VQ-GLDADFLVAS 267 (458)
Q Consensus 204 ~l~~---~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~--------~~~-~~-~~~~d~~~~s 267 (458)
.+++ +++++++++++||||.++| +++|+++|+++|+++|+|++|..... ++. +. ..+.++++.|
T Consensus 176 ~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 255 (412)
T 1ajs_A 176 DLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQS 255 (412)
T ss_dssp HHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEe
Confidence 8875 6788889999999999988 56899999999999999999763211 111 21 1234588999
Q ss_pred ccCCCCCCc--eeEEEE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH----
Q 012718 268 SHKMCGPTG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS---- 338 (458)
Q Consensus 268 ~~K~~gp~g--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~---- 338 (458)
+||.+|+.| +|++++ +++.++.+....... .+...++++.....++..+++...
T Consensus 256 ~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 318 (412)
T 1ajs_A 256 FSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKI-----------------VRVTWSNPPAQGARIVARTLSDPELFHE 318 (412)
T ss_dssp CTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCSHHHHHHHHHHHSHHHHHH
T ss_pred cccccCCCCcceEEEEEecCCHHHHHHHHHHHHHH-----------------HhcccCCCChHHHHHHHHHHcCcchhHH
Confidence 999999888 899999 665322211000000 011123345555566666666432
Q ss_pred -HhCHHHHHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCC
Q 012718 339 -TIGMQKIHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 339 -~~g~~~~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
...+++++++++++++++.+.|+++. ++++..+. .+.++++.+ +...+...+.++ ||.+.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~l~~~-gv~v~~----- 383 (412)
T 1ajs_A 319 WTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQ------IGMFSFTGL---NPKQVEYLINQK-HIYLLP----- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHC------CSSEEECCC---CHHHHHHHHHTT-CEECCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCC------CceEEEeCC---CHHHHHHHHHhC-CEEecC-----
Confidence 22367888999999999999998873 35544332 134555443 344444555566 999874
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+|++++. .+++|+++++++|+++++++
T Consensus 384 -----------~~Ris~~~-~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 384 -----------SGRINMCG-LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp -----------TSEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred -----------CcEEEeee-CCHHHHHHHHHHHHHHHHhc
Confidence 25999984 58899999999999998764
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=231.39 Aligned_cols=344 Identities=12% Similarity=0.109 Sum_probs=224.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHH-HHHHHHHHHHHHHcCCCCCC--cEEEeCChhHHHHHHHHH
Q 012718 74 AATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKAT-DEYELARKKVAAFINASDSG--EIVFTKNATEAINLVAYS 148 (458)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~la~~~g~~~~~--~v~~t~g~t~a~~~~~~~ 148 (458)
++..++++.+++++...+.+.. +++.. .++.+.... +..+.+++.+++++|++.++ ..++++|||+|+..++.+
T Consensus 61 as~n~~~~~V~eA~~~~l~~~y~~G~~g~-r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~a 139 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCccCCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHH
Confidence 4666789999999988876533 23321 222222322 33346789999999998642 235677999999999999
Q ss_pred cCCCCCCCCCEEEEcCCCCccchH-HHH---HHHHHcCCe--EEEEeCC-CCCCCCHHHHHHhhcC-CceEEEEecccCc
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIV-PWQ---LVAQKTGAN--LKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNM 220 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~-~~~---~~a~~~g~~--~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~ 220 (458)
+ +++||+|+++++.|.++.. .+. ..+...|.. ++.++++ +++.+|++++++.+.+ ++++|++..++|+
T Consensus 140 l----~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~ 215 (490)
T 2a7v_A 140 L----LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA 215 (490)
T ss_dssp H----CCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC
T ss_pred H----cCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC
Confidence 8 7999999999999875432 110 011223443 4445555 4588999999999864 7889888777665
Q ss_pred CcccccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccc------
Q 012718 221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLS------ 288 (458)
Q Consensus 221 tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~------ 288 (458)
...|+++|.++|+++|+++++|++|..|.. +..+. ++|++++|+||. .||.| |+++++++++.
T Consensus 216 --~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~ 290 (490)
T 2a7v_A 216 --RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTG 290 (490)
T ss_dssp --SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTE
T ss_pred --CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hheeeccchhccccccc
Confidence 567999999999999999999999975432 22222 589999999995 46775 99999886421
Q ss_pred -----cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 289 -----AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 289 -----~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
.+...+.. .......|+++...++++.+++......+++++.+++.+++++|.+.|.+.
T Consensus 291 ~~~~~~l~~~i~~----------------~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~ 354 (490)
T 2a7v_A 291 REIPYTFEDRINF----------------AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER 354 (490)
T ss_dssp EEEECCCHHHHHH----------------HHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHH----------------HhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 01100000 000112367888888888888887654446888899999999999999987
Q ss_pred CCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC----CCCCH
Q 012718 364 PNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH----FYNTK 437 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~----~~~t~ 437 (458)
|+++...... ..++++.+. +.+..++.+.|.+. ||.+..+..+... ..+ .++.+|++.. ...++
T Consensus 355 -G~~v~~~~t~-----t~lv~vdl~~~g~~~~~~~~~L~~~-GI~v~~~~~p~d~--~p~-~~~~iRig~~a~t~~g~~~ 424 (490)
T 2a7v_A 355 -GYSLVSGGTD-----NHLVLVDLRPKGLDGARAERVLELV-SITANKNTCPGDR--SAI-TPGGLRLGAPALTSRQFRE 424 (490)
T ss_dssp -TCEEGGGSCS-----SSEEEEECTTTTCCHHHHHHHHHHT-TEECEEECCTTCC--CSS-SCSEEEEESHHHHHTTCCH
T ss_pred -CcEEecCCCC-----CeEEEEEeCCCCCCHHHHHHHHHhC-CeEEecCccCCCC--CCC-CCCceEecccccccCCCCH
Confidence 9988753211 457888875 45678888899887 9999754322110 011 1578999663 34689
Q ss_pred HHHHHHHHHHHHHHHh
Q 012718 438 EDVDEFIHALNETVSF 453 (458)
Q Consensus 438 ~di~~l~~~l~~~~~~ 453 (458)
+|++++++.|.++++.
T Consensus 425 ~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 425 DDFRRVVDFIDEGVNI 440 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998864
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=231.79 Aligned_cols=340 Identities=15% Similarity=0.134 Sum_probs=220.8
Q ss_pred CCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHH-HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKA-TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
..+.++.+.+++.+.+.... .++.. .+..+... ....+.+++.+++++|.+. ..++++||++|+..++.++
T Consensus 41 ~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~v~~~~Gs~a~~~al~~~--- 114 (425)
T 3ecd_A 41 ENIVSRAVLDAQGSVLTNKYAEGYPGK-RYYGGCEFADEVEALAIERVKRLFNAGH--ANVQPHSGAQANGAVMLAL--- 114 (425)
T ss_dssp CCCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHH---
T ss_pred cCCCCHHHHHHHhhhhhcccccCCCcc-hhcCCChHHHHHHHHHHHHHHHHhCCCC--ceeecCchHHHHHHHHHHc---
Confidence 34458999999888764221 11110 11111111 1233445688999999873 3356899999999999988
Q ss_pred CCCCCCEEEEcCCCCccchHHHHH-HHHHcCCeEEEEeCCC-CCCCCHHHHHHhhc-CCceEEEEecccCcCcccccHHH
Q 012718 153 NLKSGDEVILTVAEHHSAIVPWQL-VAQKTGANLKFLNLND-DESPDLDKLKEMLS-RKTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~~~-~a~~~g~~~~~v~~~~-~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
+++||+|+++.++|++....... .....+.+++.++.++ ++.+|++++++.+. .++++|++++++| |...++++
T Consensus 115 -~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l~~ 191 (425)
T 3ecd_A 115 -AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--PRKLDFAR 191 (425)
T ss_dssp -CCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--CSCCCHHH
T ss_pred -cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--CCcCCHHH
Confidence 78999999999999873321111 1122234566676663 37889999999997 4889999988777 56788999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCC--CCC-CCCcEEEecccCCCC-CCceeEEEEec-cccccCCCccccCcceEeee
Q 012718 230 IVHWSHDVGAKVLVDACQSVPHMVVD--VQG-LDADFLVASSHKMCG-PTGIGFLFGKS-DLLSAMPPFLGGGEMISDVF 304 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~~g~~~~~--~~~-~~~d~~~~s~~K~~g-p~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~ 304 (458)
|.++|+++|+++|+|++|+.|..... ... ...|++++|+||+++ |. +|+++.++ ++.+.+......+
T Consensus 192 i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~~~~~~------- 263 (425)
T 3ecd_A 192 FRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINSAVFPG------- 263 (425)
T ss_dssp HHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHHC---------
T ss_pred HHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHhhhCcc-------
Confidence 99999999999999999875543111 110 127899999999664 44 69999885 4444443222111
Q ss_pred cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEE
Q 012718 305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCS 384 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~ 384 (458)
..++++.....++..++......+++.+.++.+++.+++.+.|.+. ++++..+.. .+.+++
T Consensus 264 -------------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-----~~~~~~ 324 (425)
T 3ecd_A 264 -------------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGT-----DNHLLL 324 (425)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC-----SSSEEE
T ss_pred -------------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCC-----CceEEE
Confidence 1245666666776666655544457788999999999999999886 888765432 266888
Q ss_pred EEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC----CHHHHHHHHHHHHHHHHhh
Q 012718 385 FNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN----TKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 385 ~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~----t~~di~~l~~~l~~~~~~~ 454 (458)
+.++ +.+...+.+.|.++ ||.++++..+.... .. ...+.+|++++.++ +++|++++++.|++++++.
T Consensus 325 ~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~p~~~~-~~-~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 325 VDLRPKGLKGAQVEQALERA-GITCNKNGIPFDPE-KP-TITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp EECGGGTCCHHHHHHHHHHT-TEECEECCCTTCSS-CT-TTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHc-CCEecccccCCCCC-CC-CCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 8875 45677888888877 99998443211000 00 11468999955444 4899999999999998765
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=223.94 Aligned_cols=337 Identities=17% Similarity=0.123 Sum_probs=222.2
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHH-HHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKV-AAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
+.++.+.+++.+.+... .+.. .....+++++++ |+++|. . +++++++|||+|+++++.++ .+++
T Consensus 13 ~~~~~i~~a~~~~~~~~-------~~~~---~~~~~~~l~~~~~a~~~g~-~-~~~v~~~sgt~al~~al~~l---~~~~ 77 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASH-------IYTN---YGPINQRFEQTIMSGFFQN-R-GAVTTVANATLGLMAAIQLK---KRKK 77 (377)
T ss_dssp CCGGGGHHHHHHHHHHT-------CCSS---SCHHHHHHHHHHHHHTSTT-C-SEEEEESCHHHHHHHHHHHH---SCTT
T ss_pred CCcHHHHHHHHHHHHcC-------Cccc---CCHHHHHHHHHHHHHHhCC-C-CeEEEeCCHHHHHHHHHHHc---CCCC
Confidence 45667788888877652 1110 013356888999 999993 2 28999999999999999987 3789
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhh-cCC--ceEEEEecccCcCcccccHHHHHH
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEML-SRK--TKLVVIHHISNMLASILPIEEIVH 232 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l-~~~--~~~v~~~~~~n~tG~~~~l~~i~~ 232 (458)
||+|+++.++|.+. ...+...|++++.++++ .++.+|++++++++ +++ +++|+ ++|++|...|+++|.+
T Consensus 78 Gd~Vi~~~~~~~~~----~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~ 150 (377)
T 3ju7_A 78 GKYALMPSFTFPAT----PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEE 150 (377)
T ss_dssp CCEEEEESSSCTHH----HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHH
T ss_pred cCEEEECCCCcHHH----HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHH
Confidence 99999999999965 44456679999999998 45889999999988 566 88887 4567999999999999
Q ss_pred HHHhcCcEEEEeccccCCcccCCCCCC---CCcEEEec--ccCCCCCCceeEEEEec-cccccCCCccccCcceEeeecC
Q 012718 233 WSHDVGAKVLVDACQSVPHMVVDVQGL---DADFLVAS--SHKMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 233 l~~~~~~~vivD~a~~~g~~~~~~~~~---~~d~~~~s--~~K~~gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
+|+ +|+++|+|++|++|... +.... ..|+.+.| .+|.+++...|+++.++ ++.+.+..+...+..
T Consensus 151 la~-~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~------- 221 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFD------- 221 (377)
T ss_dssp HHH-TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBC-------
T ss_pred HHh-cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCC-------
Confidence 999 99999999999988752 22222 24666666 56988763467777765 444444433221111
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEE
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSF 385 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~ 385 (458)
..+.....++..+..+....+ ++..+. .++...++.+++++++.+.|++++++.+....... ..... ++.+
T Consensus 222 -~~~~~~~~g~~~~~~~~~aa~----~~~~l~--~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~ 293 (377)
T 3ju7_A 222 -TNRECTMMGFNCKMSEYAAAI----GIATMK--KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKT-EAVIQQFMPI 293 (377)
T ss_dssp -TTSCBCSSCCBCCCCHHHHHH----HHHHHH--THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCC-SCBCCSSEEE
T ss_pred -CCCceeeccccCCCCHHHHHH----HHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCC-CcceEEEEEE
Confidence 001111112222233322222 222232 36777888889999999999887543211111110 11122 4456
Q ss_pred EeCC-CChHHHHHHHhhhcCeEeccCCC--CC-hhhHhhc--CC--------CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 386 NVEN-IHPTDIATLLDQQYGVATRSGHH--CA-QPLHRYL--GV--------NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 386 ~~~~-~~~~~~~~~l~~~~gi~~~~g~~--~~-~~~~~~~--g~--------~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.+++ .+.+++.+.|.++ ||.++.+.. |. .+.+... +. ...+|++++...|++|++++++.|++++
T Consensus 294 ~~~~~~~~~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 294 LCPEEVRNKQVIEDLKKQ-KIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp ECCTTSCHHHHHHHHHTT-TBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC--
T ss_pred EeCChhhHHHHHHHHHHC-CCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 6664 3478999999998 999876541 11 1111111 11 4689999999999999999999999887
Q ss_pred Hhh
Q 012718 452 SFF 454 (458)
Q Consensus 452 ~~~ 454 (458)
...
T Consensus 373 ~~~ 375 (377)
T 3ju7_A 373 VSA 375 (377)
T ss_dssp ---
T ss_pred hcc
Confidence 654
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=231.62 Aligned_cols=320 Identities=14% Similarity=0.076 Sum_probs=211.2
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC------CCCcEEE--eCChhHH
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS------DSGEIVF--TKNATEA 141 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~------~~~~v~~--t~g~t~a 141 (458)
|+|.....++.+.+.+++.+..... .+.. ... ....+++|++++++++.. ++ +|++ |+|+|+|
T Consensus 38 ~~d~~~~~~~~~~v~~a~~~~~~~~-~~~~-Y~~------~~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~v~t~G~~~a 108 (401)
T 7aat_A 38 YRDDNGKPYVLNCVRKAEAMIAAKK-MDKE-YLP------IAGLADFTRASAELALGENSEAFKSG-RYVTVQGISGTGS 108 (401)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHTT-CCCC-CCC------TTCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEEEHHHHH
T ss_pred EECCCCCEechHHHHHHHHHhcccc-cccC-CCC------CCCCHHHHHHHHHHhcCCCccccccC-ceEEEecCcchHH
Confidence 3444444555677888887776521 1111 111 122457888888888654 43 8877 9999999
Q ss_pred HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhc---CCceEEEEec
Q 012718 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLS---RKTKLVVIHH 216 (458)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~---~~~~~v~~~~ 216 (458)
+++++.++.. ..++||+|++++|+|.+. ...++..|++++.++++ .++.+|++.+++.+. ++++++++++
T Consensus 109 l~~~~~~l~~-~~~~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~ 183 (401)
T 7aat_A 109 LRVGANFLQR-FFKFSRDVYLPKPSWGNH----TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHAC 183 (401)
T ss_dssp HHHHHHHHHH-HCTTCCEEEEEESCCTTH----HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESS
T ss_pred HHHHHHHHHH-hccCCCEEEEcCCCchhH----HHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCC
Confidence 9998876510 147899999999999954 55566779999999985 357889997776664 4779999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc--------CC--CCCCCCcEEEecccCCCCCCc--eeEEE
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV--------VD--VQGLDADFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~--------~~--~~~~~~d~~~~s~~K~~gp~g--~G~l~ 281 (458)
++||||.+++ +++|+++|+++|+++|+|++|...... +. ....+..+++.|+||.||++| +|+++
T Consensus 184 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~ 263 (401)
T 7aat_A 184 AHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFT 263 (401)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEE
Confidence 9999999988 678899999999999999998733221 10 123347789999999999888 89999
Q ss_pred Eec---c----ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH--H-H--HhCHHHHHHHH
Q 012718 282 GKS---D----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY--L-S--TIGMQKIHAYE 349 (458)
Q Consensus 282 ~~~---~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~--~-~--~~g~~~~~~~~ 349 (458)
+.. + +.+.+...... . ..+++.....++..++.. + . ...+++.++++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 322 (401)
T 7aat_A 264 VICRDAEEAKRVESQLKILIRP--------------------M-YSNPPMNGARIASLILNTPELRKEWLVEVKGMADRI 322 (401)
T ss_dssp EECSSHHHHHHHHHHHHHHHHH--------------------H-HSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHHh--------------------c-cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 732 2 22222211110 0 112333222333223321 1 0 11256778899
Q ss_pred HHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCe
Q 012718 350 MELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNAS 426 (458)
Q Consensus 350 ~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~ 426 (458)
+++++++.+.|.++ +++++..+. .+.+++..+ +.+.+...+.+. ||.+.+ .
T Consensus 323 ~~~r~~l~~~L~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~ll~~~-gi~v~~----------------~ 376 (401)
T 7aat_A 323 ISMRTQLVSNLKKEGSSHNWQHITDQ------IGMFCFTGL---KPEQVERLTKEF-SIYMTK----------------D 376 (401)
T ss_dssp HHHHHHHHHHHHHTTCCSCCHHHHHC------CSSEEECCC---CHHHHHHHHHHH-CEECCT----------------T
T ss_pred HHHHHHHHHHHHhcCCCCCCceecCC------cceEEecCC---CHHHHHHHHHhC-CEeccC----------------C
Confidence 99999999999876 124433332 133444433 345554444556 999853 3
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 427 ARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 427 lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+|+|++..++ +||+++++.|++++
T Consensus 377 ~Ris~~~~~~-~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 377 GRISVAGVAS-SNVGYLAHAIHQVT 400 (401)
T ss_dssp CEEEGGGCCT-TTHHHHHHHHHHHH
T ss_pred CeEEeccCCh-hhHHHHHHHHHHHh
Confidence 6999986445 56999999999876
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=242.13 Aligned_cols=326 Identities=16% Similarity=0.110 Sum_probs=224.2
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHH-HHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCC------CCCCcE
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQN-YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA------SDSGEI 132 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~~v 132 (458)
++.+.|..+. ..++++.+.+++.+ .+... ..+ .+ .......++|+.++++++. +++ +|
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~~~--~y----~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~i 99 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS--YNH--EY----LGITGLPSLTSNAAKIIFGTQSDALQED-RV 99 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTT--CCC--CC----CCTTCCHHHHHHHHHHHHCTTCHHHHTT-CE
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcc--ccc--CC----CCCCCcHHHHHHHHHHHhcCCCCCCCcc-eE
Confidence 3456665543 34678889999888 65411 111 01 1122345788899988842 343 89
Q ss_pred EE--eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CC-CCCCCHHHHHHhhcCC
Q 012718 133 VF--TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-ND-DESPDLDKLKEMLSRK 208 (458)
Q Consensus 133 ~~--t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~-~~~~d~~~l~~~l~~~ 208 (458)
++ |+|+++|+++++..+. .+++||+|+++.|+|++. ...++..|++++.++. ++ ++.+|++++++.++++
T Consensus 100 ~~~~t~g~~~a~~~~~~~~~--~~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 100 ISVQSLSGTGALHISAKFFS--KFFPDKLVYLSKPTWANH----MAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA 173 (412)
T ss_dssp EEEEEEHHHHHHHHHHHHHH--HHCTTCCEEEEESCCTTH----HHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred EEEeccchHhHHHHHHHHHH--HhCCCCEEEEeCCCCccH----HHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC
Confidence 99 9999999999843221 146899999999999964 5556677999999998 43 5778999999998653
Q ss_pred ---ceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc--------ccC-CCCCCC----CcEEEeccc
Q 012718 209 ---TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH--------MVV-DVQGLD----ADFLVASSH 269 (458)
Q Consensus 209 ---~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~--------~~~-~~~~~~----~d~~~~s~~ 269 (458)
+.++++++++||||.+++ +++|+++|+++|+++|+|++|.... .++ ++...+ .+++++|+|
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 253 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFA 253 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccC
Confidence 456666999999999998 5678999999999999999996321 112 222122 468899999
Q ss_pred CCCCCCc--eeEEE--E-----ecc----ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 270 KMCGPTG--IGFLF--G-----KSD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 270 K~~gp~g--~G~l~--~-----~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
|.+|+.| +|+++ . +++ +++.+.... +...++++.....++..+++.
T Consensus 254 K~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~---------------------~~~~~~~~~~~~~a~~~~l~~ 312 (412)
T 1yaa_A 254 KNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKII---------------------RSEVSNPPAYGAKIVAKLLET 312 (412)
T ss_dssp TTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHH---------------------HTTTSSCCHHHHHHHHHHHHS
T ss_pred CCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHH---------------------hhccCCCChHHHHHHHHHhCC
Confidence 9999888 79998 6 444 444433211 111234566666666666654
Q ss_pred HH-----HhCHHHHHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEec
Q 012718 337 LS-----TIGMQKIHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATR 408 (458)
Q Consensus 337 ~~-----~~g~~~~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~ 408 (458)
.. ...+++++++++++++++.+.|+++. ++++..+. .+.++++. .+...+.+.+.++ ||.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~l~~~-gi~v~ 382 (412)
T 1yaa_A 313 PELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQ------CGMFSFTG---LTPQMVKRLEETH-AVYLV 382 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHC------CSSEEECC---CCHHHHHHHHHHH-CEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccC------ceEEEeeC---CCHHHHHHHHHhC-CEEec
Confidence 32 12477888999999999999998763 25554332 13344443 3455665555566 99986
Q ss_pred cCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 409 SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 409 ~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+ ++||+++. .+++|+++++++|+++++.+
T Consensus 383 ~----------------~~Ris~~~-~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 383 A----------------SGRASIAG-LNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp T----------------TSEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred c----------------CcEEEEcc-CCHhHHHHHHHHHHHHHHhh
Confidence 3 47999984 58999999999999998753
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-28 Score=235.48 Aligned_cols=326 Identities=13% Similarity=0.074 Sum_probs=223.6
Q ss_pred CCeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CC--CCCCcEEE--
Q 012718 66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NA--SDSGEIVF-- 134 (458)
Q Consensus 66 ~~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~--~~~~~v~~-- 134 (458)
++.+.|..+.. .++++.+.+++.+.+... ..+. + .......++|+++++++ +. ++ ++|++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~--y----~~~~g~~~lr~~la~~~~~~~~~~-~~v~~~~ 96 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE--TTKT--Y----AGLSGEPEFQKAMGELILGDGLKS-ETTATLA 96 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHC--CCCC--C----CCSSCCHHHHHHHHHHHHGGGCCG-GGEEEEE
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcCCc--ccCC--C----CCCCCcHHHHHHHHHHHhCCCCCc-ccEEEEe
Confidence 45677776652 256789999998877541 1110 1 01122457888899887 54 34 38998
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhcC---Cc
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR---KT 209 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~---~~ 209 (458)
|+|+++|+++++.++. .+.+||+|+++.++|++. ...++..|++++.++.+ +++.+|++.+++.+++ ++
T Consensus 97 ~~g~~~a~~~~~~~~~--~~~~gd~vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 170 (394)
T 2ay1_A 97 TVGGTGALRQALELAR--MANPDLRVFVSDPTWPNH----VSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGD 170 (394)
T ss_dssp EEHHHHHHHHHHHHHH--HHCTTCCEEEEESCCHHH----HHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTC
T ss_pred cCCchhHHHHHHHHHH--hcCCCCEEEEcCCCChhH----HHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCC
Confidence 9999999999988762 134899999999999954 55566679999999985 4577899999999875 36
Q ss_pred eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-------cCC-CCCCC-CcEEEecccCCCCCCc-
Q 012718 210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-------VVD-VQGLD-ADFLVASSHKMCGPTG- 276 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-------~~~-~~~~~-~d~~~~s~~K~~gp~g- 276 (458)
+++++++++||||.++| +++|+++|+++|+++|+|++|+.... ++. +...+ .+++++|+||.+|++|
T Consensus 171 ~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 250 (394)
T 2ay1_A 171 MVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRE 250 (394)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGG
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCC
Confidence 78888999999999998 55789999999999999999985322 121 22222 4577889999999777
Q ss_pred -eeEEEE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-----HhCHHHHHH
Q 012718 277 -IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIGMQKIHA 347 (458)
Q Consensus 277 -~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~~~~ 347 (458)
+|++++ ++++++.+....... .+...++++.....++..+++... ...++++.+
T Consensus 251 riG~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~ 313 (394)
T 2ay1_A 251 RTGCLLALCADAATRELAQGAMAFL-----------------NRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS 313 (394)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHH-----------------HhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 699998 454433221110000 001122334445555555555320 123678888
Q ss_pred HHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 348 YEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
+++++++++.+.|+++. ++++..+. .+.++++.++ ...+.+.+.++ ||.+.++
T Consensus 314 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~g~~~~~~~~---~~~~~~~l~~~-gi~v~~~-------------- 369 (394)
T 2ay1_A 314 GMLRLREQLAGELRDLSGSDRFGFVAEH------RGMFSRLGAT---PEQVKRIKEEF-GIYMVGD-------------- 369 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTTTHHHHC------CSSEEECCCC---HHHHHHHHHHH-CEECCTT--------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCeeEEcCC------ceEEEeeCCC---HHHHHHHHHhC-CEEecCC--------------
Confidence 99999999999987752 24443322 1446666543 45666667677 9998642
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 425 ASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
+|++++ +++++|+++++++|+++
T Consensus 370 --~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 370 --SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp --CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred --CeEEee-cCCHhhHHHHHHHHHHc
Confidence 699998 47899999999999875
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=225.58 Aligned_cols=324 Identities=13% Similarity=0.074 Sum_probs=219.4
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
.++.+.+++.+.+...... + ......+..+++++.++++++...+++++||+||++|+..++.++. ...+++
T Consensus 60 ~~p~v~~a~~~~~~~~~~~---~---~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~--~~~~~~ 131 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANPAGA---T---ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIV--KATGRS 131 (439)
T ss_dssp SCHHHHHHHHHHHHSCSCS---C---SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHH--HHHSCC
T ss_pred CCHHHHHHHHHHHHhccCc---c---ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHH--HHhCCC
Confidence 6889999999988754211 1 0112245667888999999965542399999999999999998741 123567
Q ss_pred EEEEcCCCCccchHHHHHHHHHcC--C---------eEEEEeCCCCCCC-----CHHHHHHhh----cCCceEEEEeccc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTG--A---------NLKFLNLNDDESP-----DLDKLKEML----SRKTKLVVIHHIS 218 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g--~---------~~~~v~~~~~~~~-----d~~~l~~~l----~~~~~~v~~~~~~ 218 (458)
+|++.++.||+.......+..... . .+..++.+.++.. |+++|++.+ .+++++|+++.++
T Consensus 132 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~ 211 (439)
T 3dxv_A 132 GVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQ 211 (439)
T ss_dssp EEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSB
T ss_pred EEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEcccc
Confidence 899999999876543332211100 0 1123333322222 689999999 4578999999999
Q ss_pred CcCccccc----HHHHHHHHHhcCcEEEEecccc-CCc----ccCCCCCCCCcEEEecccCCCCC-CceeEEEEeccccc
Q 012718 219 NMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPH----MVVDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLS 288 (458)
Q Consensus 219 n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~----~~~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~ 288 (458)
|++|.+.+ +++|.++|++||+++|+|++|+ ++. ...+.....+|++ |++|.+|+ ..+|++++++++++
T Consensus 212 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~riG~~~~~~~~~~ 289 (439)
T 3dxv_A 212 SDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPLSAVIAPAEILD 289 (439)
T ss_dssp STTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCCEEEEEEHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcCCcceEEEEECHHHHh
Confidence 99999999 9999999999999999999997 321 1122223447776 78897764 23899999998887
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh----cCC
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL----SIP 364 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~----~~~ 364 (458)
.+.+...+ . .. .+...+.+..++++.+.+. .+.++++++.+++.+.|. ..+
T Consensus 290 ~~~~~~~~--------------------~-t~-~~~~~~~aa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~ 344 (439)
T 3dxv_A 290 CASAFAMQ--------------------T-LH-GNPISAAAGLAVLETIDRD---DLPAMAERKGRLLRDGLSELAKRHP 344 (439)
T ss_dssp SCSSSSCC--------------------T-TT-TCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhcCCCcC--------------------C-Cc-ccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77643210 1 12 4555666666677766552 344445555555555544 445
Q ss_pred CEEEeCCCCCCcCccccEEEEEeC---------CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVE---------NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
.+....+. +.++++.+. .....++.+.|.++ ||.+.++... .+++|++++...
T Consensus 345 ~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----------~~~iRi~~~~~~ 406 (439)
T 3dxv_A 345 LIGDIRGR-------GLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGMN----------GNVLEFTPPLTI 406 (439)
T ss_dssp TEEEEEEE-------TTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEESTT----------SCEEEECCCTTC
T ss_pred CeEEEEEE-------EEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCCC----------CCEEEEECCCCC
Confidence 55443222 667777662 12246788888888 9999876411 479999999889
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 012718 436 TKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~~ 455 (458)
+++|+++++++|+++++++.
T Consensus 407 t~e~i~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 407 TETDIHKALDLLDRAFSELS 426 (439)
T ss_dssp CHHHHHHHHHHHHHHHHTGG
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=229.22 Aligned_cols=347 Identities=14% Similarity=0.127 Sum_probs=235.8
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHHHHHHHHH-HHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELAR-KKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+.|.. +..+.++.+.+++.+.+.+.. .++. ..+..+.......+++. +.+++++|++. ..++++||++|+..
T Consensus 47 ~i~l~~-~~~~~~~~v~~a~~~~~~~~~~~g~~~-~~~~~g~~~~~~~e~~a~~~la~~~g~~~--~~v~~~sGs~a~~~ 122 (447)
T 3h7f_A 47 TLEMIA-SENFVPRAVLQAQGSVLTNKYAEGLPG-RRYYGGCEHVDVVENLARDRAKALFGAEF--ANVQPHSGAQANAA 122 (447)
T ss_dssp SEECCT-TCCCCCHHHHHHHTSGGGGCCCCEETT-EESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHH
T ss_pred ceeEec-CCCCCCHHHHHHHHHHhcCCccccCCc-ccccCccHHHHHHHHHHHHHHHHHcCCCc--eEEEeCCHHHHHHH
Confidence 455643 445569999999988764321 1111 11222333344445555 99999999873 33448889999999
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccch-HHHHHHHHHcCCeEEEEeCC-CCCCCCHHHHHHhhcC-CceEEEEecccCcC
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAI-VPWQLVAQKTGANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNML 221 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~-~~~~~~a~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~t 221 (458)
++.++ +++||+|++++++|++.. ..........+..++.++++ +++.+|++++++.+.. ++++|+++.++|++
T Consensus 123 a~~~~----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~ 198 (447)
T 3h7f_A 123 VLHAL----MSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPR 198 (447)
T ss_dssp HHHHH----CCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCS
T ss_pred HHHHh----cCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCC
Confidence 99988 789999999999987632 11110111235677777776 4577899999999854 78899998888988
Q ss_pred cccccHHHHHHHHHhcCcEEEEeccccCCcc----cCCCCCCCCcEEEecccCCCC-CCceeEEEEeccccccCCCcccc
Q 012718 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHM----VVDVQGLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGG 296 (458)
Q Consensus 222 G~~~~l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~~~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g 296 (458)
+. ++++|.++|+++|+++|+|++|..|.. ..+.. .+.|++++|+||.++ |.| |+++.++++++.+......
T Consensus 199 ~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~~~ 274 (447)
T 3h7f_A 199 VL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAVFP 274 (447)
T ss_dssp CC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHHTT
T ss_pred cc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhcCC
Confidence 76 999999999999999999999875432 11111 247999999999654 665 9999998776655432211
Q ss_pred CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CCEEEeCCC
Q 012718 297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI----PNIRIYGPK 372 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~----~~~~~~~~~ 372 (458)
+..++++...+.++.+++......++++..+++.++++++.+.|.+. +++++....
T Consensus 275 --------------------~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~ 334 (447)
T 3h7f_A 275 --------------------GQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGG 334 (447)
T ss_dssp --------------------TTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGS
T ss_pred --------------------cccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCC
Confidence 12356676667777777766544346788899999999999999876 578876532
Q ss_pred CCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC----CCHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY----NTKEDVDEFIHA 446 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~----~t~~di~~l~~~ 446 (458)
.. ..++++.+. +.+...+.+.|.++ ||.++......... ....++++|+++... .+++|++++++.
T Consensus 335 ~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-GI~v~~~~i~~~~~--~p~~~~~lRig~~~~~~~~~~~eei~~~~~~ 406 (447)
T 3h7f_A 335 TD-----VHLVLVDLRDSPLDGQAAEDLLHEV-GITVNRNAVPNDPR--PPMVTSGLRIGTPALATRGFGDTEFTEVADI 406 (447)
T ss_dssp CS-----SSEEEEECTTSSCCHHHHHHHHHHT-TEECBC---------------CEEEEECHHHHHHTCCHHHHHHHHHH
T ss_pred CC-----CCEEEEEcCCCCCCHHHHHHHHHHC-CeEEecccCCCCCC--CCCCCCceeccCHHHhhCCCCHHHHHHHHHH
Confidence 11 557777775 34566777777777 99987321110000 001257899987643 578999999999
Q ss_pred HHHHHHhh
Q 012718 447 LNETVSFF 454 (458)
Q Consensus 447 l~~~~~~~ 454 (458)
|.+++++.
T Consensus 407 l~~~l~~~ 414 (447)
T 3h7f_A 407 IATALATG 414 (447)
T ss_dssp HHHHHHSG
T ss_pred HHHHHhcc
Confidence 99998754
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-26 Score=226.55 Aligned_cols=346 Identities=11% Similarity=0.065 Sum_probs=230.4
Q ss_pred CeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|.. ..+..++.+.+++.+.+.... .+.. .....+...++++.++++++.+.+ +|+||+|+++
T Consensus 49 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~~----~~~~~~~~~~l~~~la~~~~~~~~-~v~~~~ggse 121 (449)
T 3a8u_X 49 GRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSPG----FQYGHPLSFQLAEKITDLTPGNLN-HVFFTDSGSE 121 (449)
T ss_dssp CCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCCS----SSCCCHHHHHHHHHHHTTSSTTEE-EEEEESSHHH
T ss_pred CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--Cccc----cccCCHHHHHHHHHHHHhCCCCCC-EEEEcCcHHH
Confidence 34567763 344558999999998876532 1110 001234456788999999976654 8999999999
Q ss_pred HHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHH----HcC-----CeEEEEeCCCCC-----CCC-----
Q 012718 141 AINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQ----KTG-----ANLKFLNLNDDE-----SPD----- 197 (458)
Q Consensus 141 a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~----~~g-----~~~~~v~~~~~~-----~~d----- 197 (458)
|++.++.++.... -.++++|++.+++|++.......... +.+ ..+..++.+... .+|
T Consensus 122 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~ 201 (449)
T 3a8u_X 122 CALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGG 201 (449)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHH
Confidence 9999998762100 01678999999999987543332210 001 134555543211 135
Q ss_pred ---HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCC
Q 012718 198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA 261 (458)
Q Consensus 198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~ 261 (458)
+++|++.++ +++++|+++..+|+||.+.| +++|.++|++||+++|+|++|. +|... .+.....+
T Consensus 202 ~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~ 281 (449)
T 3a8u_X 202 IALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTP 281 (449)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCC
Confidence 899999887 46788888888888999888 9999999999999999999994 65321 11112347
Q ss_pred cEEEecccCCCCCC--ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 262 d~~~~s~~K~~gp~--g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
|++ |++|.+++. .+|++++++++++.+.....+. ..... ......+.+....+++.++++.+.+
T Consensus 282 di~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~-----------~~~~~-~~~~t~~~~~~~~aa~~aal~~~~~ 347 (449)
T 3a8u_X 282 DLM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPE-----------YAVEF-PHGYTYSAHPVACAAGLAALCLLQK 347 (449)
T ss_dssp SEE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCT-----------TSCSS-CCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred CEE--EEcccccCCCCceEEEEECHHHHHHhhccCccc-----------ccccc-cccCCCcccHHHHHHHHHHHHHHHh
Confidence 866 677977652 2899999988766554311000 00000 0001224566677777788887765
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC------hHHHHHHHhhhcCeEeccCCCC
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH------PTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
. .+.++++++.+++.+.|+++..+.+.... ...+.++++.+++.. ..++.+.|.++ ||.++++
T Consensus 348 ~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~----~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~--- 416 (449)
T 3a8u_X 348 E---NLVQSVAEVAPHFEKALHGIKGAKNVIDI----RNFGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG--- 416 (449)
T ss_dssp T---THHHHHHHHHHHHHHHHHTTTTSTTEEEE----EEETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE---
T ss_pred c---CHHHHHHHHHHHHHHHHHHHhcCCCeEEE----eeeEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC---
Confidence 3 46778888888898888764222111110 123678999887431 22688999888 9999864
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++||+++..++++|+++++++|+++++++
T Consensus 417 ----------g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 417 ----------GDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp ----------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ----------CCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 2689999988899999999999999998764
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-28 Score=235.45 Aligned_cols=323 Identities=13% Similarity=0.067 Sum_probs=222.4
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCC------CCCCcEE
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA------SDSGEIV 133 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~~v~ 133 (458)
++++.|..+. ..++++.+.+++.+.+... ..+. + .......++|++++++++. ++ ++|+
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~--y----~~~~g~~~lr~~la~~~~~~~~~~~~~-~~v~ 96 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE--TTKN--Y----LGIDGIPEFGRCTQELLFGKGSALIND-KRAR 96 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHC--CCCC--C----CCTTCCHHHHHHHHHHHHCTTCHHHHT-TCEE
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCcc--cccC--C----CCCCCCHHHHHHHHHHHhcCCCCcccc-ccEE
Confidence 4456666654 2356789999998876542 1110 1 1123345788999998832 23 3888
Q ss_pred E--eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhcC--
Q 012718 134 F--TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR-- 207 (458)
Q Consensus 134 ~--t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~-- 207 (458)
+ |+|+++|+++++.++. .+++||+|+++.|+|++ +...++..|++++.++.+ +++.+|++++++.+++
T Consensus 97 ~~~~~g~~~a~~~~~~~~~--~~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 170 (396)
T 2q7w_A 97 TAQTPGGTGALRVAADFLA--KNTSVKRVWVSNPSWPN----HKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ 170 (396)
T ss_dssp EEEESHHHHHHHHHHHHHH--HHSCCCEEEEEESCCTH----HHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC
T ss_pred EEecccchhhHHHHHHHHH--HhCCCCEEEEcCCCchh----HHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCC
Confidence 8 9999999999987652 13589999999999995 455667789999999985 4577899999999875
Q ss_pred -CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-------cCC-CCC-CCCcEEEecccCCCCC
Q 012718 208 -KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-------VVD-VQG-LDADFLVASSHKMCGP 274 (458)
Q Consensus 208 -~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-------~~~-~~~-~~~d~~~~s~~K~~gp 274 (458)
+++++++++++||||.++| +++|+++|+++|+++|+|++|+.... ++. +.. .+.++++.|+||.+|+
T Consensus 171 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 250 (396)
T 2q7w_A 171 AGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGL 250 (396)
T ss_dssp TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTC
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccc
Confidence 4688899999999999998 56899999999999999999884321 111 211 1356889999999998
Q ss_pred Cc--eeEEEE---ecc----ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH-----HHh
Q 012718 275 TG--IGFLFG---KSD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL-----STI 340 (458)
Q Consensus 275 ~g--~G~l~~---~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-----~~~ 340 (458)
+| +|++++ +++ +++.+.... +...++++.....++..+++.. ...
T Consensus 251 ~G~riG~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~ 309 (396)
T 2q7w_A 251 YNERVGACTLVAADSETVDRAFSQMKAAI---------------------RANYSNPPAHGASVVATILSNDALRAIWEQ 309 (396)
T ss_dssp GGGCCEEEEEECSSHHHHHHHHHHHHHHH---------------------HTTTSSCCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred cccccceEEEEcCCHHHHHHHHHHHHHHH---------------------hhccCCCCcHHHHHHHHHhcChhhHHHHHH
Confidence 88 799997 443 322221100 0112344665566665655432 012
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 341 GMQKIHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
.++++.++++++++++.+.|+++. ++++..+. .+.++++.++ ...+.+.+.++ ||.+.+
T Consensus 310 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~l~~~-gv~v~~-------- 371 (396)
T 2q7w_A 310 ELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQ------NGMFSFSGLT---KEQVLRLREEF-GVYAVA-------- 371 (396)
T ss_dssp HHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHC------CSSEEECCCC---HHHHHHHHHHH-CEECCT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCC------CceEEEecCC---HHHHHHHHHhc-CeeecC--------
Confidence 367778888999999999998873 25443332 1345555443 45566666667 999864
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.+|++++. .+++|+++++++|++++
T Consensus 372 --------~~Ris~~~-~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 372 --------SGRVNVAG-MTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp --------TCEEEGGG-CCTTTHHHHHHHHHHHC
T ss_pred --------CceEEEee-cCHHHHHHHHHHHHhcC
Confidence 26999985 48899999999998763
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=237.60 Aligned_cols=309 Identities=15% Similarity=0.132 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
...++++.+|+++|++. .+++++|+|+++..++.++ +++||+|+++.++|.+...+ +++..|++++.++..
T Consensus 174 ~i~e~e~~lA~~~gae~--~i~v~nGtt~an~~ai~al----~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~ 244 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADK--TYFVLGGSSNANNTVTSAL----VSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTN 244 (730)
T ss_dssp HHHHHHHHHHHHTTCSE--EEEESSHHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEE
T ss_pred HHHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHHh----cCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCC
Confidence 56789999999999973 6778888889999999998 78999999999999987643 145569999988765
Q ss_pred CC-----CCCCHHHH-----HHhhcCC------c----eEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCc
Q 012718 192 DD-----ESPDLDKL-----KEMLSRK------T----KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPH 251 (458)
Q Consensus 192 ~~-----~~~d~~~l-----~~~l~~~------~----~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~ 251 (458)
.+ +.+|++++ +++++++ + ++++++++ |++|.+.|+++|+++|+++|+++++|++|+.+.
T Consensus 245 ~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~ 323 (730)
T 1c4k_A 245 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 323 (730)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEccccccc
Confidence 32 34688888 8888765 5 88999988 689999999999999999999999999997421
Q ss_pred ---------ccCCCCCCCCc----EEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCcc
Q 012718 252 ---------MVVDVQGLDAD----FLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF 317 (458)
Q Consensus 252 ---------~~~~~~~~~~d----~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (458)
.+++...++.| +++.|+||+ .|+.++|+++++++.+..-+.... . ..+......+
T Consensus 324 ~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~-~----------~~~~~~~~~~ 392 (730)
T 1c4k_A 324 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCD-H----------KHFNNSFNLF 392 (730)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCC-H----------HHHHHHHHHH
T ss_pred ccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccC-H----------HHHHHHHHHh
Confidence 12334345677 999999995 456778999998875422110000 0 0000000234
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCC----------------------
Q 012718 318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IPNIRIYGPKPS---------------------- 374 (458)
Q Consensus 318 ~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~---------------------- 374 (458)
..+++++..++++.++++++...+.....++..++++++++.|.+ ++++++..+...
T Consensus 393 ~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (730)
T 1c4k_A 393 MSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRF 472 (730)
T ss_dssp SCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBC
T ss_pred CCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhcc
Confidence 568899999999999998876622345567888999999999988 789998765310
Q ss_pred ---C-----cCc-cc-----c-EEEEEeC------------CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeE
Q 012718 375 ---E-----HVQ-RA-----A-LCSFNVE------------NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASA 427 (458)
Q Consensus 375 ---~-----~~~-~~-----~-~v~~~~~------------~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~l 427 (458)
. ... .+ + .+.|..+ +.+..++.+.|.++ ||.+.... ...+
T Consensus 473 ~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~-GI~v~~~~------------~~~i 539 (730)
T 1c4k_A 473 EKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDH-GIIPEKSD------------LNSI 539 (730)
T ss_dssp CTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHT-TCCCSEEC------------SSEE
T ss_pred CccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHC-CcEEEECC------------CCeE
Confidence 0 000 01 1 1667764 35678899999988 99885422 5689
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 428 RASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 428 Ris~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
|++++.++|.+|+++++++|.++.++.
T Consensus 540 r~~~s~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 540 LFLMTPAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988755
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=229.63 Aligned_cols=325 Identities=14% Similarity=0.088 Sum_probs=218.9
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CCCC----CCcEEE--eCChhHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASD----SGEIVF--TKNATEA 141 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~~----~~~v~~--t~g~t~a 141 (458)
+|+|..+..++.+.+.+++.+............. ......++|+++++++ |.+. +++|++ |+|+|+|
T Consensus 58 ~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~------~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~a 131 (448)
T 3meb_A 58 AYRDESGKPWILPAVKEAEAIISSDLSKYNKEYP------PVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGS 131 (448)
T ss_dssp CCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCC------CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHH
T ss_pred cccCCCCCEechHHHHHHHHHHhhcccCCCCCCC------CCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHH
Confidence 3455555566778888876665421101111111 1223457889999988 7762 248999 9999999
Q ss_pred HHHHH--HHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH----HcCCeEEEEeC-CCC--CCCCHHHHHHhhcC---Cc
Q 012718 142 INLVA--YSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ----KTGANLKFLNL-NDD--ESPDLDKLKEMLSR---KT 209 (458)
Q Consensus 142 ~~~~~--~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~----~~g~~~~~v~~-~~~--~~~d~~~l~~~l~~---~~ 209 (458)
+++++ .++ +.+||+|++++|+|.+. ...++ ..|++++.++. +++ +.+|++.+++.+++ ++
T Consensus 132 l~l~~~~~~~----~~~gd~Vlv~~p~~~~~----~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~ 203 (448)
T 3meb_A 132 LHIGFEFLHL----WMPKAEFYMPSTTWPNH----YGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKS 203 (448)
T ss_dssp HHHHHHHHHH----HCTTCCEEEESSCCTHH----HHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHH----hCCCCEEEECCCCCHhH----HHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCc
Confidence 98844 333 57899999999999954 44555 77999999998 554 78899999999874 57
Q ss_pred eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc-c-------CC-C-CCCCCcEEEecccCCCCCCc
Q 012718 210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM-V-------VD-V-QGLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-~-------~~-~-~~~~~d~~~~s~~K~~gp~g 276 (458)
+++++++++||||.+++ +++|+++|+++|+++|+|++|..... + +. + ......+++.|+||.+|++|
T Consensus 204 ~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 283 (448)
T 3meb_A 204 IFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYG 283 (448)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG
T ss_pred EEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcc
Confidence 88999999999999999 55699999999999999999873221 1 00 1 12234577899999999888
Q ss_pred --eeEE--EE--------e-c----cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-
Q 012718 277 --IGFL--FG--------K-S----DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS- 338 (458)
Q Consensus 277 --~G~l--~~--------~-~----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~- 338 (458)
+|++ ++ + + ++++.+.... +...++++.....++..++....
T Consensus 284 ~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~---------------------~~~~~~~~~~~~~a~~~~l~~~~l 342 (448)
T 3meb_A 284 ERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQI---------------------RKTWSMSAIHGAYIVQVIVHDKRL 342 (448)
T ss_dssp GCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHH---------------------HTTTSSCCHHHHHHHHHHHTSHHH
T ss_pred ccceeeeeeeccccccccCCHHHHHHHHHHHHHHH---------------------hcccCCccHHHHHHHHHHhcChHH
Confidence 8998 65 3 3 3333332111 11123455555555555543211
Q ss_pred --H--hCHHHHHHHHHHHHHHHHHHHhcC--CC------EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeE
Q 012718 339 --T--IGMQKIHAYEMELAKYLYENLLSI--PN------IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVA 406 (458)
Q Consensus 339 --~--~g~~~~~~~~~~l~~~l~~~L~~~--~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~ 406 (458)
+ ..+++.+++++++++++.+.|+++ ++ +++..+. .+.+++..+ +. +++..+.+++||.
T Consensus 343 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~---~~-~~~~~ll~~~gV~ 412 (448)
T 3meb_A 343 LQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTA------IGMFTFTGL---TP-EHVDYLKEKWSIY 412 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHC------CSSEEECCC---CH-HHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCC------ceEEEecCC---CH-HHHHHHHHhCCEE
Confidence 1 126788899999999999999876 34 3332222 133444433 33 5555554334999
Q ss_pred eccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 407 TRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 407 ~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+.+|+ .|||++. .+.++|++++++|.++++++
T Consensus 413 v~~G~---------------gRis~a~-~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 413 LVKAG---------------GRMSMCG-LTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp ECSGG---------------GEEEGGG-CCTTTHHHHHHHHHHHHHHS
T ss_pred EeCCC---------------cEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 98764 2999975 36677999999999999854
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=224.65 Aligned_cols=338 Identities=10% Similarity=0.026 Sum_probs=226.7
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|..+ .+..++.+.+++.+.+..... ... ++ ..+...++++.++++++.+.+ +|++|+|+++
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~-----~~-~~~~~~~l~~~la~~~~~~~~-~v~~~~gg~e 113 (433)
T 1zod_A 42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFS-----EM-LSRPVVDLATRLANITPPGLD-RALLLSTGAE 113 (433)
T ss_dssp CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCT-----TC-CCHHHHHHHHHHHHHSCTTCC-EEEEESCHHH
T ss_pred CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc-ccc-----cc-CCHHHHHHHHHHHHhCCCCcC-EEEEeCchHH
Confidence 345666532 234588999999998876421 111 11 124456788899999987654 9999999999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-----Hc---CCeEEEEeCCCC----C--------CCCHHH
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-----KT---GANLKFLNLNDD----E--------SPDLDK 200 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-----~~---g~~~~~v~~~~~----~--------~~d~~~ 200 (458)
|+..++..+. ...++++|++.++.|++.......... .. ...+..++.+.. + .+|+++
T Consensus 114 a~~~a~~~~~--~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~ 191 (433)
T 1zod_A 114 SNEAAIRMAK--LVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY 191 (433)
T ss_dssp HHHHHHHHHH--HHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred HHHHHHHHHH--HhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHH
Confidence 9999998641 113467999999999976543332210 00 113445544321 1 135899
Q ss_pred HHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCcEEEec
Q 012718 201 LKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADFLVAS 267 (458)
Q Consensus 201 l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d~~~~s 267 (458)
|++.++ +++++|+++.++|+||...+ +++|.++|++||+++|+|++|+ ++... . +.....+|++ |
T Consensus 192 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s 269 (433)
T 1zod_A 192 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--T 269 (433)
T ss_dssp HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--E
T ss_pred HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--E
Confidence 999887 46788888888899998776 9999999999999999999998 54221 1 1112346765 6
Q ss_pred ccCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 268 SHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 268 ~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
++|.+|+ -++|++++++++++.+...... .....+.+.....++.++++.+.+. .+.
T Consensus 270 ~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~-------------------~~~t~~~~~~~~~a~~aal~~~~~~---~~~ 327 (433)
T 1zod_A 270 LSKTLGAGLPLAAIVTSAAIEERAHELGYL-------------------FYTTHVSDPLPAAVGLRVLDVVQRD---GLV 327 (433)
T ss_dssp ECHHHHTTSSCEEEEECHHHHHHHHHTTCC-------------------CCCTTTTCHHHHHHHHHHHHHHHHT---THH
T ss_pred ecccccCCCCeeEEEEhHHHHHhhccCCCC-------------------CCCCCCcCHHHHHHHHHHHHHHHhC---CHH
Confidence 7896654 3389999998876655421000 0011234666777777888877663 345
Q ss_pred HHHHHHHHHHHHHHhc----CCCEEEeCCCCCCcCccccEEEEEeCC---------CChHHHHHHHhhhcCeEeccCCCC
Q 012718 347 AYEMELAKYLYENLLS----IPNIRIYGPKPSEHVQRAALCSFNVEN---------IHPTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
++++++.+++.+.|++ .+.+....+ .+.++++.+++ ....++.+.|.++ ||.+.++..+
T Consensus 328 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-------~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~ 399 (433)
T 1zod_A 328 ARANVMGDRLRRGLLDLMERFDCIGDVRG-------RGLLLGVEIVKDRRTKEPADGLGAKITRECMNL-GLSMNIVQLP 399 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEE-------ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHT-TEECCEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEE-------EEEEEEEEEecCccccCCChHHHHHHHHHHHHC-CCeEeccCCC
Confidence 6666777777777654 344433222 26678887752 2256788888887 9999887522
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+.++++||+++...+++|+++++++|+++++++
T Consensus 400 --------~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 400 --------GMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp --------TSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 224799999998899999999999999998764
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=232.84 Aligned_cols=340 Identities=16% Similarity=0.116 Sum_probs=221.1
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVA 146 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~ 146 (458)
+..|+|..+.... +.+.+++.+.+... . ..+ .......+++++++++++.+ ++++|+|||+|+.+++
T Consensus 42 g~~ylD~~~~~~~-~~v~~a~~~~~~~~---~--~~y----~~~~~~~~l~~~la~~~~~~---~v~~t~ggt~A~~~al 108 (467)
T 1ax4_A 42 SAVYIDLLTDSGT-NAMSDHQWAAMITG---D--EAY----AGSRNYYDLKDKAKELFNYD---YIIPAHQGRGAENILF 108 (467)
T ss_dssp GGCSEECSCSSSC-CCEEHHHHHHHHTC---C--CCS----SSCHHHHHHHHHHHHHHCCC---EEEEESSHHHHHHHHH
T ss_pred CceeeecccCcCC-HHHHHHHHHHHhhc---c--ccc----ccCccHHHHHHHHHHHcCCC---cEEEcCCcHHHHHHHH
Confidence 3457777554433 55556665554321 0 001 11234567899999999874 8999999999999999
Q ss_pred HHcCCCCCC----CCCE---EEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC----------CCCCCHHHHHHhhcC--
Q 012718 147 YSWGLSNLK----SGDE---VILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----------DESPDLDKLKEMLSR-- 207 (458)
Q Consensus 147 ~~l~~~~~~----~g~~---vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~----------~~~~d~~~l~~~l~~-- 207 (458)
.++ .+ +||. |+++ ..|+. .+.......|++++.++... ++.+|+++|++++++
T Consensus 109 ~~~----~~~~~~~Gd~~~~viv~-~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~ 180 (467)
T 1ax4_A 109 PVL----LKYKQKEGKAKNPVFIS-NFHFD---TTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG 180 (467)
T ss_dssp HHH----HHHHHHTTCCSSCEEEE-SSCCH---HHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC
T ss_pred HHH----HHhhccCCCccceEEEe-ccccc---hhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC
Confidence 987 56 8998 8888 44432 22444456688888765421 356899999999974
Q ss_pred --CceEEEEecccCcC-ccccc---HHHHHHHHHhcCcEEEEeccccC-----------CcccCCCCC------CCCcEE
Q 012718 208 --KTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSV-----------PHMVVDVQG------LDADFL 264 (458)
Q Consensus 208 --~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~vivD~a~~~-----------g~~~~~~~~------~~~d~~ 264 (458)
++++|++++++||+ |.+++ +++|+++|++||+++|+|+++.. +....++.. ..+|++
T Consensus 181 ~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 260 (467)
T 1ax4_A 181 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADAL 260 (467)
T ss_dssp GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEE
T ss_pred CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceE
Confidence 68999999999999 78877 67899999999999999998765 222222111 136889
Q ss_pred EecccCCCCCCceeEEEEe-c-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 265 VASSHKMCGPTGIGFLFGK-S-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 265 ~~s~~K~~gp~g~G~l~~~-~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
++|+||.+|++-.|+++.+ + ++++.+......++ ...+.++.+...+.++..+++...+
T Consensus 261 ~~s~sK~~g~~~Gg~~~~~d~~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~a~~~~l~~~~~--- 321 (467)
T 1ax4_A 261 TMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPME----------------GFVTYGGLAGRDMAAMVQGLEEGTE--- 321 (467)
T ss_dssp EEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHT----------------CSTTTTTCCHHHHHHHHHHHHHTTC---
T ss_pred EEeccccCCCCcceEEEeCCHHHHHHHHHhhccccc----------------cccccCCccchHHHHHHHHHHHhhh---
Confidence 9999998886523777777 5 66554432211000 0011234454444444444443221
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE-------eC--CCChHHHHHHH-hhhcCeEecc-CC
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN-------VE--NIHPTDIATLL-DQQYGVATRS-GH 411 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~--~~~~~~~~~~l-~~~~gi~~~~-g~ 411 (458)
+...++..++.+++.+.|.+ +++++..+. .+.++++. ++ +.+..++.+.| .++ ||.+.+ |.
T Consensus 322 ~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-gv~v~~~g~ 393 (467)
T 1ax4_A 322 EEYLHYRIGQVKYLGDRLRE-AGIPIQYPT------GGHAVFVDCKKLVPQIPGDQFPAQAVINALYLES-GVRAVEIGS 393 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCBCSSC------CSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHH-CEECEEESH
T ss_pred hhHHHHHHHHHHHHHHHHHh-CCCCcccCC------CceEEEEehhhhccccccCCCCHHHHHHHHHHhc-CceeeecCc
Confidence 12223334667888888877 477665433 25678888 43 23457788888 777 999988 54
Q ss_pred CCChhhHhhcC-----CCCeEEEeeCC-CCCHHHHHHHHHHHHHHHHhhh
Q 012718 412 HCAQPLHRYLG-----VNASARASLHF-YNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 412 ~~~~~~~~~~g-----~~~~lRis~~~-~~t~~di~~l~~~l~~~~~~~~ 455 (458)
++.... ...| ..+++|++++. .+|.+|++++++.|++++++.+
T Consensus 394 ~~~~~~-~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 394 FLLGRD-PATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp HHHCBC-TTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred cccccc-cccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 321000 0001 13799999984 4899999999999999887654
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-26 Score=225.22 Aligned_cols=336 Identities=16% Similarity=0.150 Sum_probs=225.2
Q ss_pred CCeEEecCCCC---CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 66 KKLVYLDNAAT---SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 66 ~~~i~l~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
.+..|+|..+. .++++.+.+++... . ..+ .......+++++++++++.+ ++++|+||++|+
T Consensus 40 ~~~~ylD~~~~~~~~~~~~~~~~a~~~~------~---~~y----~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~ 103 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAMSDKQWAGMMMG------D---EAY----AGSENFYHLERTVQELFGFK---HIVPTHQGRGAE 103 (456)
T ss_dssp GGGCSEECSCSSSCCCCCHHHHHHHTTC------C---CCS----SSCHHHHHHHHHHHHHHCCS---EEEEESSHHHHH
T ss_pred cccceeeeccccCCccCCHHHHHHhhcc------h---hhc----ccChhHHHHHHHHHHHhCCC---cEEEeCCcHHHH
Confidence 34456776433 25667777766511 1 011 11345668999999999875 899999999999
Q ss_pred HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC----------CCCCCHHHHHHhhcCCc---
Q 012718 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND----------DESPDLDKLKEMLSRKT--- 209 (458)
Q Consensus 143 ~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~----------~~~~d~~~l~~~l~~~~--- 209 (458)
..++.++ +++|| +++.++|++. +...+...|++++.+++++ ++.+|+++|++++++++
T Consensus 104 ~~al~~l----~~~gd--i~~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~ 174 (456)
T 2ez2_A 104 NLLSQLA----IKPGQ--YVAGNMYFTT---TRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAEN 174 (456)
T ss_dssp HHHHHHH----CCTTC--EEEESSCCHH---HHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGG
T ss_pred HHHHHHh----CCCCC--Eeccccccch---hHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccc
Confidence 9999988 67898 7888899433 2344566799999998863 25789999999997655
Q ss_pred -eEEEEecccC-cCccccc---HHHHHHHHHhcCcEEEEeccccCC---------cccCCCC--------CCCCcEEEec
Q 012718 210 -KLVVIHHISN-MLASILP---IEEIVHWSHDVGAKVLVDACQSVP---------HMVVDVQ--------GLDADFLVAS 267 (458)
Q Consensus 210 -~~v~~~~~~n-~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g---------~~~~~~~--------~~~~d~~~~s 267 (458)
++|++++++| |||.+.| +++|+++|++||+++|+|++|+.| ....+.. ....|+++.|
T Consensus 175 ~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S 254 (456)
T 2ez2_A 175 IAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMS 254 (456)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEE
T ss_pred eeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEe
Confidence 8999999998 9999998 999999999999999999999875 1111111 1236888889
Q ss_pred ccCCCCCCceeEEEE-eccccccCCCcccc-CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 268 SHKMCGPTGIGFLFG-KSDLLSAMPPFLGG-GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 268 ~~K~~gp~g~G~l~~-~~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
++|+++++.+|+++. ++++++.+...... ++. .+.+..+...+.++ ++..+.... +.+
T Consensus 255 ~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~a~--a~~~~~~~~-~~~ 314 (456)
T 2ez2_A 255 GKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGM-----------------PSYGGLAGRDMEAM--AIGLREAMQ-YEY 314 (456)
T ss_dssp TTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCC-----------------TTTTTCCHHHHHHH--HHHHHHHTC-HHH
T ss_pred CcccCCCCceeEEEECCHHHHHHHHHHHhhccCc-----------------ccccCcchhHHHHH--HHHHHHHhH-HHH
Confidence 889876333799988 45666554432110 000 00112233233221 233333322 456
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe----CCCChHHH-----HHHH-hhhcCeEecc-CCCCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV----ENIHPTDI-----ATLL-DQQYGVATRS-GHHCA 414 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~-----~~~l-~~~~gi~~~~-g~~~~ 414 (458)
.++..++.+++.+.|++. ++++..+. .+.++++.+ ++.+..++ .+.| .++ ||.+.+ |.+|.
T Consensus 315 ~~~~~~~~~~l~~~L~~~-g~~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-gv~~~~~g~~~~ 386 (456)
T 2ez2_A 315 IEHRVKQVRYLGDKLKAA-GVPIVEPV------GGHAVFLDARRFCEHLTQDEFPAQSLAASIYVET-GVRSMERGIISA 386 (456)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCBCSSC------CSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHH-SEECEEESHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CCccccCC------CceEEEEEhHHhcCCCChhhccHHHHHHHHHHhc-Ceeeeccccccc
Confidence 677778889999999875 77655443 156777776 34445555 6666 566 998654 44331
Q ss_pred hhhHhh-----cCCCCeEEEeeCCC-CCHHHHHHHHHHHHHHHHhhh
Q 012718 415 QPLHRY-----LGVNASARASLHFY-NTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 415 ~~~~~~-----~g~~~~lRis~~~~-~t~~di~~l~~~l~~~~~~~~ 455 (458)
. .... ....+++|++++.+ ++++|+++++++|++++++..
T Consensus 387 ~-~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 387 G-RNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp C-BCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred c-cCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 1 0000 11247899999976 899999999999999988654
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=222.75 Aligned_cols=348 Identities=13% Similarity=0.049 Sum_probs=217.3
Q ss_pred eEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 68 LVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 68 ~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
.-|+|..+ .|..++.+.+++.+.+......... ....+..+++++.++++++.+.+ +|+||+|+++|
T Consensus 29 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~------~~~~~~~~~l~~~la~~~~~~~~-~v~~~~gg~ea 101 (430)
T 3i4j_A 29 RRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGS------QFSSDVLEEYAGRLARFVGLPTF-RFWAVSGGSEA 101 (430)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT------TCEEHHHHHHHHHHHHHTTCTTC-EEEEESSHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhccccccc------ccCCHHHHHHHHHHHHhCCCCCC-EEEEeCcHHHH
Confidence 34566543 3345899999999988764211100 11234556788899999987765 99999999999
Q ss_pred HHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHHcC---------C--eEEEEeCCCC---CCCCHHHHHH
Q 012718 142 INLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQKTG---------A--NLKFLNLNDD---ESPDLDKLKE 203 (458)
Q Consensus 142 ~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g---------~--~~~~v~~~~~---~~~d~~~l~~ 203 (458)
+..++.++... .-.+++.|++.++.|++.......+..... . .+..++.+.. +..|+++|++
T Consensus 102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 181 (430)
T 3i4j_A 102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRA 181 (430)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHH
Confidence 99999876210 004578999999999975433222211100 0 3334443322 2236688888
Q ss_pred hhc----CCceEEEEecccC-cCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc--cC--CCC-CCCCcEEEecc
Q 012718 204 MLS----RKTKLVVIHHISN-MLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM--VV--DVQ-GLDADFLVASS 268 (458)
Q Consensus 204 ~l~----~~~~~v~~~~~~n-~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~--~~--~~~-~~~~d~~~~s~ 268 (458)
.++ +++++|+++.+++ ++|...+ +++|.++|++||+++|+|++|. ++.. .. +.. ...+|+++ +
T Consensus 182 ~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--~ 259 (430)
T 3i4j_A 182 LLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAV--L 259 (430)
T ss_dssp HHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--E
T ss_pred HHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEE--E
Confidence 886 4668888888888 9999887 9999999999999999999997 4322 11 111 33467665 6
Q ss_pred cCCCCC--CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHH
Q 012718 269 HKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKI 345 (458)
Q Consensus 269 ~K~~gp--~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~ 345 (458)
+|.+++ -.+|++++++++++.+....... ......+.+...+.+..++++.+.+.. .+++
T Consensus 260 sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~-----------------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 322 (430)
T 3i4j_A 260 GKGLAAGYAPLAGLLAAPQVYETVMGGSGAF-----------------MHGFTYAGHPVSVAAGLSVLDIVEREDLTGAA 322 (430)
T ss_dssp CGGGTTTSSCCEEEEECHHHHHHHHHTTCBC-----------------CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cccccCCccccEEEEECHHHHHHHhccCCcc-----------------cccCCCCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 797765 22799999988776654310000 000122456666677777777765533 3444
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC----------ChHHHHHHHhhhcCeEeccCCCCCh
Q 012718 346 HAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI----------HPTDIATLLDQQYGVATRSGHHCAQ 415 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~l~~~~gi~~~~g~~~~~ 415 (458)
++....+.+.|.+.+.+++++....+. +.++++.+.+. ...++.+.+.++ ||.++++.++..
T Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~ 394 (430)
T 3i4j_A 323 KERGAQLLAGLQALQARFPQMMQVRGT-------GLLLGVVLGDLATGQAFETPGIASRIGAAALKR-GLITYPGSGAEP 394 (430)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEE-------TTEEEEEEC------------CHHHHHHHHHHT-TEECC-------
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEE-------EEEEEEEeccccccCCCccHHHHHHHHHHHHhC-CCEEEecccccC
Confidence 455555555555555556666654332 67888877532 125788889888 999988642211
Q ss_pred hhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 416 PLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 416 ~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.. ..+++||+++...+++|+++++++|+++++++
T Consensus 395 ~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 395 NG-----RGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ---------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 11 15689999998899999999999999998865
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=224.84 Aligned_cols=337 Identities=10% Similarity=0.051 Sum_probs=226.9
Q ss_pred CeEEecCC------CCCCCcHHHH-H-HHHH---HHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEe
Q 012718 67 KLVYLDNA------ATSQKPIAVL-K-ALQN---YYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFT 135 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~-~-a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t 135 (458)
+..|+|.. ..|..++.+. + ++.+ .+... .+.+. . ...+...++.+.++++++....++|+|+
T Consensus 53 g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~---~~~~~---~-~~~~~~~~la~~la~~~~~~~~~~v~~~ 125 (449)
T 2cjg_A 53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALN---KPSNS---D-VYSVAMARFVETFARVLGDPALPHLFFV 125 (449)
T ss_dssp CCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTC---CCCTT---T-CCCHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred CcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhc---CCCCc---c-cCCHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 44677752 2344688999 8 9999 44432 11110 0 1234456788899999973222499999
Q ss_pred CChhHHHHHHHHHcCCCCC---------C-CCCEEEEcCCCCccchHHHHHHH-----HHcCC-----eEEEEeCCC--C
Q 012718 136 KNATEAINLVAYSWGLSNL---------K-SGDEVILTVAEHHSAIVPWQLVA-----QKTGA-----NLKFLNLND--D 193 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~~---------~-~g~~vl~~~~~~~s~~~~~~~~a-----~~~g~-----~~~~v~~~~--~ 193 (458)
+|+++|++.++..+....- + +|++|++.++.||+....+..+. .+.+. .+..+|.++ .
T Consensus 126 ~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 205 (449)
T 2cjg_A 126 EGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGL 205 (449)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTC
T ss_pred CchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchh
Confidence 9999999999875420000 1 28899999999997654322211 11233 556666543 1
Q ss_pred C--------CCCHHHHHHhhc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C-
Q 012718 194 E--------SPDLDKLKEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V- 254 (458)
Q Consensus 194 ~--------~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~- 254 (458)
. ..++++|++.++ +++++|+++.++|++|...+ +++|.++|++||+++|+|++|+ +|... .
T Consensus 206 ~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~ 285 (449)
T 2cjg_A 206 DEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWA 285 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSST
T ss_pred hccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCccee
Confidence 1 135566888885 57899999999999998776 9999999999999999999998 43221 1
Q ss_pred -CCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHH
Q 012718 255 -DVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA 333 (458)
Q Consensus 255 -~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 333 (458)
+.....+|++ +++|.+ | +|++++++++++.+.+...+... .....+.+.....++.++
T Consensus 286 ~~~~~~~~di~--t~sK~l-~--iG~~~~~~~~~~~l~~~~~~~~~----------------~~~t~~~n~~~~~aa~aa 344 (449)
T 2cjg_A 286 YQQLDVAPDIV--AFGKKT-Q--VCGVMAGRRVDEVADNVFAVPSR----------------LNSTWGGNLTDMVRARRI 344 (449)
T ss_dssp HHHHTCCCSEE--EECGGG-S--SEEEEECGGGGGSTTCTTTSTTS----------------SCCSSSSCHHHHHHHHHH
T ss_pred ecccCCCceEE--EecCcc-c--EEEEEECHHHhhhhhhcccCCcc----------------cccCCCCCHHHHHHHHHH
Confidence 1112357876 467966 3 89999999888765542110000 001224566677777788
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHhc----CCC-EEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEe
Q 012718 334 IDYLSTIGMQKIHAYEMELAKYLYENLLS----IPN-IRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVAT 407 (458)
Q Consensus 334 l~~~~~~g~~~~~~~~~~l~~~l~~~L~~----~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~ 407 (458)
++.+.+ +.+.++++++.+++.+.|++ .+. +....+ .+.++++.+++. ...++.+.|.++ ||.+
T Consensus 345 l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~l~~~-Gv~v 413 (449)
T 2cjg_A 345 LEVIEA---EGLFERAVQHGKYLRARLDELAADFPAVVLDPRG-------RGLMCAFSLPTTADRDELIRQLWQR-AVIV 413 (449)
T ss_dssp HHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEE-------ETTEEEEECSSHHHHHHHHHHHHHT-TEEC
T ss_pred HHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEee-------ccEEEEEEECChHHHHHHHHHHHHC-CeEE
Confidence 887765 34567777888888888765 343 433222 267888888642 356788888887 9999
Q ss_pred ccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 408 RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 408 ~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.++. .+++|+++++.++++|+++++++|+++++++
T Consensus 414 ~~~g------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 414 LPAG------------ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EEET------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCC------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8753 5799999998899999999999999998754
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-26 Score=220.62 Aligned_cols=298 Identities=19% Similarity=0.192 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHH-HHHcCCeEEEE
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV-AQKTGANLKFL 188 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-a~~~g~~~~~v 188 (458)
.+..+++++.++++.|.+ .+++++||++|+..+ ..+ +++||+|+++++.|++....+... .+..|++++.+
T Consensus 66 ~p~~~~l~~~la~l~g~~---~~~~~~sG~~Ai~~~-~~l----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 137 (400)
T 3nmy_A 66 NPTRFAYERCVAALEGGT---RAFAFASGMAATSTV-MEL----LDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFV 137 (400)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHH-HTT----SCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEE
T ss_pred CHHHHHHHHHHHHHhCCC---CEEEecCHHHHHHHH-HHH----cCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEE
Confidence 345667889999999976 677788889999984 444 689999999999999877666666 67779999999
Q ss_pred eCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
+.+ |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+... ....+++|+++.|+
T Consensus 138 ~~~-----d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~-~~~~~g~div~~S~ 211 (400)
T 3nmy_A 138 DLT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ-RPLSLGADLVVHSA 211 (400)
T ss_dssp CTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC-CGGGGTCSEEEEET
T ss_pred CCC-----CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC-ChhhcCCcEEEecC
Confidence 876 899999999999999999999999999999999999999999999999999855431 11235799999999
Q ss_pred cCCCCCCc---ee-EEEE-eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH
Q 012718 269 HKMCGPTG---IG-FLFG-KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343 (458)
Q Consensus 269 ~K~~gp~g---~G-~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 343 (458)
+|+++++| .| +++. ++++++.+....... ..+.+....+. ++..+.. +.
T Consensus 212 sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~---------------------g~~~~~~~a~~---~l~~l~~--l~ 265 (400)
T 3nmy_A 212 TKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSI---------------------GGVQGPFDSFL---ALRGLKT--LP 265 (400)
T ss_dssp TTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHH---------------------CCBCCHHHHHH---HHHHHTT--HH
T ss_pred ccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhc---------------------CCCCCHHHHHH---HHHhHhH--HH
Confidence 99776543 45 3444 444544443221111 12233322222 2233322 44
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEe-CCCCCCc----------CccccEEEEEeCCC--ChHHHHHHHhhhcCeEeccC
Q 012718 344 KIHAYEMELAKYLYENLLSIPNIRIY-GPKPSEH----------VQRAALCSFNVENI--HPTDIATLLDQQYGVATRSG 410 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~----------~~~~~~v~~~~~~~--~~~~~~~~l~~~~gi~~~~g 410 (458)
...++..++++++.+.|++.|.+... .|.-... ...+++++|.+++. ....+.+.+.-- ++.++.|
T Consensus 266 ~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~-~~~~s~G 344 (400)
T 3nmy_A 266 LRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELF-TLAESLG 344 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSS-EECSCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcc-eEecCCC
Confidence 55667788899999999988877643 3321100 23467999999752 123344444322 4445555
Q ss_pred CCCCh--------------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 411 HHCAQ--------------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 411 ~~~~~--------------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
..++- .....+|. ++.+|+|++. ||++.+++.|+++++
T Consensus 345 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 345 GVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI----EDLGDLRGDLERALV 397 (400)
T ss_dssp SSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHHC
T ss_pred CCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 43321 01112343 6899999998 455566666666664
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=225.32 Aligned_cols=355 Identities=13% Similarity=0.071 Sum_probs=220.8
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-----C--CC--CCCcEEEeCCh
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-----N--AS--DSGEIVFTKNA 138 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----g--~~--~~~~v~~t~g~ 138 (458)
.+.|..+..+..++.+.+++.+.... ..++... ....+++++++.+ + .+ +.++|++|+|+
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~~~-~~Y~~~~----------g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~ 174 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGILG-CNYPVPP----------RMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGG 174 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHT-CSCCSSS----------SCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHH
T ss_pred hhecccCCCCCCChHHHHHHHHhhhc-CCCCCCc----------CCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCH
Confidence 45565566666677777777766532 1222111 1113444444332 2 21 23499999999
Q ss_pred hHHHHHHHHHcC-CCCCCCCCEEEEcCCCCccchHHHHHHHH--HcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEE
Q 012718 139 TEAINLVAYSWG-LSNLKSGDEVILTVAEHHSAIVPWQLVAQ--KTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVV 213 (458)
Q Consensus 139 t~a~~~~~~~l~-~~~~~~g~~vl~~~~~~~s~~~~~~~~a~--~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~ 213 (458)
++++.+++.++. ...+++||+|++++|+|++. ...+. ..|++++.++.+++ +.+|++.+++.++.++++|+
T Consensus 175 ~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~ 250 (546)
T 2zy4_A 175 TAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPY----IEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFF 250 (546)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHH----HHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEE
T ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccH----HHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEE
Confidence 999999998731 00157899999999999954 44333 34788999998754 45899999998888899999
Q ss_pred EecccCcCccccc---HHHHHHHH--HhcCcEEEEeccccCCcc-cCCCCC--CCCcEEEecccCCCCCCc--eeEEEEe
Q 012718 214 IHHISNMLASILP---IEEIVHWS--HDVGAKVLVDACQSVPHM-VVDVQG--LDADFLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 214 ~~~~~n~tG~~~~---l~~i~~l~--~~~~~~vivD~a~~~g~~-~~~~~~--~~~d~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
+++++||||.+++ +++|+++| +++|++||+|++|+.... +..+.. .+.++++.|+||.+|.+| +||++++
T Consensus 251 l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~ 330 (546)
T 2zy4_A 251 CVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAH 330 (546)
T ss_dssp EESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEE
T ss_pred EECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEEC
Confidence 9999999999998 56788888 789999999999984322 111111 246789999999999888 8999998
Q ss_pred cc-ccccCCCcc------------ccCcceEeeecCC-CCC---CCCCCccCCCCCCHHHHHHHH-HH-HHHHHH--hCH
Q 012718 284 SD-LLSAMPPFL------------GGGEMISDVFLDH-STF---ADPPSRFEAGTPAIGEAIGLG-AA-IDYLST--IGM 342 (458)
Q Consensus 284 ~~-~~~~l~~~~------------~g~~~~~~~~~~~-~~~---~~~~~~~~~gt~~~~~~~~l~-~a-l~~~~~--~g~ 342 (458)
++ +++.+.... ..+..... .... ..+ ......+...+.+.....++. .+ ..++.+ .-.
T Consensus 331 ~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~ 409 (546)
T 2zy4_A 331 QQNVFDLALDKLQESEKVALDHRYRSLLPDVR-SLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYK 409 (546)
T ss_dssp SSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGG-GCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHhhcchhhhHHHHHHhhhcccccc-chhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHH
Confidence 86 554431000 00000000 0000 000 000000111233333333321 11 122321 124
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----------------CCh-HHHHHHHhhhcC
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----------------IHP-TDIATLLDQQYG 404 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------------~~~-~~~~~~l~~~~g 404 (458)
+++++.++++.+.+.+.|. . ++.+..+ ..+.+++++++. .+. ..+.+.+.++ |
T Consensus 410 ~~~r~~~~~r~~~l~~~L~-~-~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~-g 480 (546)
T 2zy4_A 410 HTLKQLIRRRETTLYRELG-M-PPLRDEN------AVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADET-G 480 (546)
T ss_dssp HHHHHHHHHHHHHHHGGGT-S-SCCCCTT------BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHhcC-C-CcccCCC------CeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHC-C
Confidence 6677778888888888875 3 3322111 224577888752 122 3355566667 9
Q ss_pred eEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 405 VATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 405 i~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
|.+.||..+.. .++++||+++. .+++++++++++|++++++..
T Consensus 481 V~v~pG~~F~~-------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 481 IVLLPGRGFGS-------NRPSGRASLAN-LNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp CCCEESSCTTC-------SSCEEEEESSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCccccCC-------CCCeEEEEecc-CCHHHHHHHHHHHHHHHHHHH
Confidence 99999986532 25789999983 589999999999999987654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=214.60 Aligned_cols=337 Identities=9% Similarity=0.038 Sum_probs=219.6
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC-CC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS-NL 154 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~-~~ 154 (458)
.|..++.+.+++.+.+.+..... .....+...++++.++++++.+. +|+||+||++|+..++..+... ..
T Consensus 63 lG~~~p~v~~A~~~~~~~~~~~~-------~~~~~~~~~~la~~l~~~~~~~~--~v~~~~ggseA~~~al~~~~~~~~~ 133 (452)
T 3n5m_A 63 SGYGRKELAEAAYKQLQTLSYFP-------MSQSHEPAIKLAEKLNEWLGGEY--VIFFSNSGSEANETAFKIARQYYAQ 133 (452)
T ss_dssp TCBCCHHHHHHHHHHHTTCCCCC-------TTSEEHHHHHHHHHHHHHHTSCE--EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcCCcc-------cccCCHHHHHHHHHHHHhCCCCc--eEEEeCchHHHHHHHHHHHHHHHHh
Confidence 34568999999999886532211 01123556678899999998654 3999999999999999887210 00
Q ss_pred C---CCCEEEEcCCCCccchHHHHHHHHH---------cCCeEEEEeCCCCCC---CC---------HHHHHHhhc----
Q 012718 155 K---SGDEVILTVAEHHSAIVPWQLVAQK---------TGANLKFLNLNDDES---PD---------LDKLKEMLS---- 206 (458)
Q Consensus 155 ~---~g~~vl~~~~~~~s~~~~~~~~a~~---------~g~~~~~v~~~~~~~---~d---------~~~l~~~l~---- 206 (458)
+ ++++|++.+++|++.......+... ....+..++...... -| +++|++.++
T Consensus 134 ~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~ 213 (452)
T 3n5m_A 134 KGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELS 213 (452)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCG
T ss_pred cCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCC
Confidence 3 7889999999999765433221100 001234454322111 02 889999987
Q ss_pred CCceEEEEecc-cCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC--
Q 012718 207 RKTKLVVIHHI-SNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP-- 274 (458)
Q Consensus 207 ~~~~~v~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp-- 274 (458)
+++++|+++.+ +| +|.+.| +++|.++|++||+++|+|++|. +|.. ..+.....+|+++ ++|.+++
T Consensus 214 ~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G~ 290 (452)
T 3n5m_A 214 ETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIIT--MAKGITSAY 290 (452)
T ss_dssp GGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTS
T ss_pred CCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEe--ecccccCCC
Confidence 56789999998 89 999887 9999999999999999999987 4322 1222233477775 6795543
Q ss_pred CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHH
Q 012718 275 TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELA 353 (458)
Q Consensus 275 ~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~ 353 (458)
-++|++++++++++.+......... ......+.+....++..++++.+.+.+ .+++.+....+.
T Consensus 291 ~~ig~~~~~~~i~~~~~~~~~~~~~---------------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 355 (452)
T 3n5m_A 291 LPLSATAVKREIYEAFKGKGEYEFF---------------RHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLL 355 (452)
T ss_dssp SCCEEEEEEHHHHGGGCSSSTTCSC---------------CCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cceEEEEECHHHHHHHhhccCCCCc---------------cccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3489999999888776431000000 000122456666667777787765533 334444444445
Q ss_pred HHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC--CC--------hHHHHHHHhhhcCeEeccCCCCChhhHhhcCC
Q 012718 354 KYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN--IH--------PTDIATLLDQQYGVATRSGHHCAQPLHRYLGV 423 (458)
Q Consensus 354 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--------~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~ 423 (458)
+.|.+.+.+++.+...... +.++++.+.. .+ ..++.+.+.++ ||.++++..+.. +.
T Consensus 356 ~~L~~~~~~~~~~~~~~~~-------g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~~------~~ 421 (452)
T 3n5m_A 356 EQLKEEIGEHPLVGDIRGK-------GLLVGIELVNDKETKEPIDNDKIASVVNACKEK-GLIIGRNGMTTA------GY 421 (452)
T ss_dssp HHHHHHHTTCTTEEEEEES-------SSCEEEEEEEETTTTEECCHHHHHHHHHHHHHT-TEECEECTTSST------TC
T ss_pred HHHHHHHhcCCCeEEEEEE-------EEEEEEEEecCCcccCCCCHHHHHHHHHHHHHC-CcEEeecCcccC------CC
Confidence 5555544555655543322 5566666531 11 24688888888 999998764422 22
Q ss_pred CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 424 NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 424 ~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++++||+++...+++|+++++++|++++++
T Consensus 422 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 422 NNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 689999999889999999999999998864
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=215.00 Aligned_cols=333 Identities=12% Similarity=0.026 Sum_probs=228.0
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC---
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS--- 152 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~--- 152 (458)
.|..++.+.+++.+.+.+..... ... ....+...++.+.++++++.+.+ +|+||+|+++|+..++.++...
T Consensus 65 lG~~~p~v~~A~~~~~~~~~~~~--~~~---~~~~~~~~~la~~l~~~~~~~~~-~v~~~~gGseA~~~al~~~~~~~~~ 138 (460)
T 3gju_A 65 VGYGRQKIADAIATQAKNLAYYH--AYV---GHGTEASITLAKMIIDRAPKGMS-RVYFGLSGSDANETNIKLIWYYNNV 138 (460)
T ss_dssp TCBCCHHHHHHHHHHHHHHSCCC--CCT---TCCCHHHHHHHHHHHHHSCTTEE-EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccccc--ccc---ccCCHHHHHHHHHHHhhCCCCcC-EEEEeCchHHHHHHHHHHHHHHHHh
Confidence 34567999999999887643211 000 01234556788999999876654 9999999999999999877210
Q ss_pred -CCCCCCEEEEcCCCCccchHHHHHHHH---------HcCCeEEEEeCCC-----CCCCC--------HHHHHHhhc---
Q 012718 153 -NLKSGDEVILTVAEHHSAIVPWQLVAQ---------KTGANLKFLNLND-----DESPD--------LDKLKEMLS--- 206 (458)
Q Consensus 153 -~~~~g~~vl~~~~~~~s~~~~~~~~a~---------~~g~~~~~v~~~~-----~~~~d--------~~~l~~~l~--- 206 (458)
...++++|++.++.||+.......+.. .....+..++... +...+ +++|++.++
T Consensus 139 ~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~ 218 (460)
T 3gju_A 139 LGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG 218 (460)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC
Confidence 003578999999999987654333210 0112345565432 11122 578888886
Q ss_pred -CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEecccCCCCCC-
Q 012718 207 -RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVASSHKMCGPT- 275 (458)
Q Consensus 207 -~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp~- 275 (458)
+++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|. +|... .+.....+|+++ ++|.+++.
T Consensus 219 ~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~l~gG~ 296 (460)
T 3gju_A 219 PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLIT--IAKGLTSAY 296 (460)
T ss_dssp GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTS
T ss_pred CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--eehhhcCCC
Confidence 46789999999999998776 9999999999999999999998 43221 111123477775 67966553
Q ss_pred -ceeEEEEeccccccCC-------CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHH
Q 012718 276 -GIGFLFGKSDLLSAMP-------PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIH 346 (458)
Q Consensus 276 -g~G~l~~~~~~~~~l~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~ 346 (458)
.+|++++++++++.+. .+..+ ...+.+....++..++++.+...+ +++++
T Consensus 297 ~~lg~v~~~~~i~~~~~~~~~~~~~~~~~---------------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 355 (460)
T 3gju_A 297 APLSGVIVADRVWQVLVQGSDKLGSLGHG---------------------WTYSAHPICVAAGVANLELIDEMDLVTNAG 355 (460)
T ss_dssp SCCEEEEEEHHHHHHHHHHHHHHCSCSCC---------------------CTTTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCeEEEEECHHHHHHHhcccccccccccC---------------------CCCCCCHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4899999998877663 11111 122456666777777888765543 45566
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC------------hHHHHHHHhhhcCeEeccCCCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH------------PTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
+....+.+.|.+.+.+++.+...... +.++++.+.... ..++.+.+.++ ||.++++.
T Consensus 356 ~~~~~~~~~l~~~l~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--- 424 (460)
T 3gju_A 356 ETGAYFRAELAKAVGGHKNVGEVRGD-------GMLAAVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP--- 424 (460)
T ss_dssp HHHHHHHHHHHHHHTTSTTEEEEEEE-------TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS---
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEeee-------eEEEEEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC---
Confidence 66666677777777777666544332 668888775311 34688888888 99998753
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
..+++||+++...+++|+++++++|+++++++.+
T Consensus 425 --------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 425 --------QGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp --------SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred --------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1479999999889999999999999999987654
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-24 Score=213.27 Aligned_cols=346 Identities=10% Similarity=0.062 Sum_probs=216.9
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+.-|+|..+ .|..++.+.+++.+.+......... ....+...++.+.++++++...+ +|+||+||++
T Consensus 43 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGse 115 (448)
T 3dod_A 43 GKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL------GMTNVPATQLAETLIDISPKKLT-RVFYSDSGAE 115 (448)
T ss_dssp SCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS------SSEEHHHHHHHHHHHHHSCTTEE-EEEEESSHHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc------ccCCHHHHHHHHHHHHhCCCCCC-EEEEeCchHH
Confidence 345666543 4456899999999988653211100 01234556788999999875544 9999999999
Q ss_pred HHHHHHHHcCCCCCCC----CCEEEEcCCCCccchHHHHHHHHHc---------CCeEEEEeCCCCCCC-----------
Q 012718 141 AINLVAYSWGLSNLKS----GDEVILTVAEHHSAIVPWQLVAQKT---------GANLKFLNLNDDESP----------- 196 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~----g~~vl~~~~~~~s~~~~~~~~a~~~---------g~~~~~v~~~~~~~~----------- 196 (458)
|+..++..+.....++ +++|++.+++||+.......+.... ...+..++.+..+..
T Consensus 116 A~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (448)
T 3dod_A 116 AMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQ 195 (448)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHH
Confidence 9999998873100002 5999999999997643322221100 112344554432221
Q ss_pred CHHHHHHhhc---CCceEEEEeccc-CcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcE
Q 012718 197 DLDKLKEMLS---RKTKLVVIHHIS-NMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADF 263 (458)
Q Consensus 197 d~~~l~~~l~---~~~~~v~~~~~~-n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~ 263 (458)
|+++|++.++ +++++|+++.++ |++|.+.+ +++|.++|++||+++|+|++|+ +|.. ..+.....+|+
T Consensus 196 d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di 275 (448)
T 3dod_A 196 CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDL 275 (448)
T ss_dssp HHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCE
Confidence 4788998886 467888898888 99998877 9999999999999999999988 4321 11222334776
Q ss_pred EEecccCCCCCC--ceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 264 LVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 264 ~~~s~~K~~gp~--g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
++ ++|.++++ .+|++++++++++.+.......... ......+.+.....+..++++.+.+.+
T Consensus 276 ~t--~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~--------------~~~~t~~~~~~~~aaa~aal~~~~~~~ 339 (448)
T 3dod_A 276 MA--AGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTF--------------FHGHSYTGNQLGCAVALENLALFESEN 339 (448)
T ss_dssp EE--ECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCC--------------CCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred EE--ecccccCCcCceEEEEECHHHHHHhhhccccCCcc--------------cccCCCCcCHHHHHHHHHHHHHHhccc
Confidence 65 67965542 5899999999887776410000000 000122456666677777787765533
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-C-----------hHHHHHHHhhhcCeEec
Q 012718 342 -MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-H-----------PTDIATLLDQQYGVATR 408 (458)
Q Consensus 342 -~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-----------~~~~~~~l~~~~gi~~~ 408 (458)
.+++++....+.+.|.+ +..++.+.... ..+.++++.+... . ..++.+.+.++ ||.+.
T Consensus 340 ~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~ 410 (448)
T 3dod_A 340 IVEQVAEKSKKLHFLLQD-LHALPHVGDIR-------QLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTR 410 (448)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTSTTEEEEE-------EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECC
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCCCeEEEE-------eeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEe
Confidence 33444444444555555 54554443322 2266888887632 1 26788899988 99997
Q ss_pred cCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 409 SGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 409 ~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
++ .+++|++++...+++|+++++++|+++++++..+
T Consensus 411 ~~-------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 411 PL-------------GDVIAFLPPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp EE-------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cc-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 65 2689999998899999999999999999876543
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=233.10 Aligned_cols=302 Identities=10% Similarity=0.086 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
....++++.+++++|.+ +.+++++|+++|+..++.++ +++||+|+++.++|.+...+ +...|++++.++.
T Consensus 205 g~v~~~ee~la~l~G~d--~~i~~~~Gtt~a~~~~i~al----~~~GD~Vlv~~~~h~s~~~~----~~~~G~~~v~v~~ 274 (755)
T 2vyc_A 205 GAFGESEKYAARVFGAD--RSWSVVVGTSGSNRTIMQAC----MTDNDVVVVDRNCHKSIEQG----LMLTGAKPVYMVP 274 (755)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHH----CCTTCEEEEESSCCHHHHHH----HHHHCCEEEEECC
T ss_pred cHHHHHHHHHHHHhCCC--ceEEECCcHHHHHHHHHHHh----cCCCCEEEECCCchHHHHHH----HHHcCCEEEEEeC
Confidence 45667899999999987 26778888899999999998 78999999999999987654 3446999999987
Q ss_pred CCC-----CCC-----CHHHHHHhhcC--Cce--------EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCC
Q 012718 191 NDD-----ESP-----DLDKLKEMLSR--KTK--------LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVP 250 (458)
Q Consensus 191 ~~~-----~~~-----d~~~l~~~l~~--~~~--------~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g 250 (458)
+.+ +.+ |++++++++++ +++ +++++++ |++|.+.|+++|+++|+++|+++++|++|+.+
T Consensus 275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~ 353 (755)
T 2vyc_A 275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_dssp CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence 643 345 99999999864 343 8888887 79999999999999999999999999999753
Q ss_pred cc--cC--CCCC-CC--CcE------EEecccCCC-CCCceeEEEEecc--ccccCCCccccCcceEeeecCCCCCCCCC
Q 012718 251 HM--VV--DVQG-LD--ADF------LVASSHKMC-GPTGIGFLFGKSD--LLSAMPPFLGGGEMISDVFLDHSTFADPP 314 (458)
Q Consensus 251 ~~--~~--~~~~-~~--~d~------~~~s~~K~~-gp~g~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 314 (458)
.. +. +... .+ +|+ ++.|+||++ |+.++|+++++++ .++.. .+.. ..
T Consensus 354 ~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~-~~~~-----------------~~ 415 (755)
T 2vyc_A 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFS-RFNQ-----------------AY 415 (755)
T ss_dssp GGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHH-HHHH-----------------HH
T ss_pred cccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHH-HHHH-----------------HH
Confidence 21 10 1111 34 565 999999955 5677899999876 22100 0000 00
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC---------EEEeCCCCCCc---------
Q 012718 315 SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN---------IRIYGPKPSEH--------- 376 (458)
Q Consensus 315 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~---------~~~~~~~~~~~--------- 376 (458)
..++.+++++..++++.++++++...|.+...++..++++++++.|+++++ ++++.+.....
T Consensus 416 ~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (755)
T 2vyc_A 416 MMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDF 495 (755)
T ss_dssp HHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEG
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcccccccccccc
Confidence 235568999999999999999887764567788888999999999988766 77776542100
Q ss_pred ------------------------------Cc----cccEEEEEeC-----------CCChHHHHHHHhhhcCeEeccCC
Q 012718 377 ------------------------------VQ----RAALCSFNVE-----------NIHPTDIATLLDQQYGVATRSGH 411 (458)
Q Consensus 377 ------------------------------~~----~~~~v~~~~~-----------~~~~~~~~~~l~~~~gi~~~~g~ 411 (458)
.. -...++|.++ +++..++.+.|.+. ||.+....
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~-gI~~e~~~ 574 (755)
T 2vyc_A 496 ADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH-GIVPTRTT 574 (755)
T ss_dssp GGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTT-TCCCSEEC
T ss_pred ccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHC-CCEEeecC
Confidence 00 0125677776 34558899999885 99875322
Q ss_pred CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 412 ~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.+|+++++++|.+|+++++++|.++.+..
T Consensus 575 ------------~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 575 ------------DFQIMFLFSMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp ------------SSEEEEECCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred ------------CCeEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999987654
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-27 Score=229.32 Aligned_cols=334 Identities=12% Similarity=0.027 Sum_probs=224.8
Q ss_pred CCeEEecCCCCCC-CcHHHHHHHHHHHHHhccCCCCCcchhhh-HHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 66 KKLVYLDNAATSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSA-KATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 66 ~~~i~l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
+..+.|+.+.... .|+.+.+++.+.+... ..+...+.... + .....++|+++|++++ ++++ +|++|+|
T Consensus 56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~--~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~-~iv~t~G 131 (427)
T 2hox_A 56 GCSADVASGDGLFLEEYWKQHKEASAVLVS--PWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDR-YIVFGVG 131 (427)
T ss_dssp TCCEECCSCCCGGGHHHHTTSHHHHCEEEC--TTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTC-EEEEESH
T ss_pred CceEEecCcCCCCCCCHHHHHhHHhhhhcC--CcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCC-EEEEeCC
Confidence 5678888777653 3355555665544211 11110011000 0 1114578888888886 4444 9999999
Q ss_pred hhHHHHHHHHHcCCCC----CCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEE
Q 012718 138 ATEAINLVAYSWGLSN----LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV 213 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~ 213 (458)
+++++.+++.++..+. +++||.|+++.|+|+ .+...++..|++++... +|++.|++.+++++++|+
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~----~~~~~~~~~g~~~~~~~------~d~~~l~~~~~~~~k~v~ 201 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYP----VFREQTKYFDKKGYVWA------GNAANYVNVSNPEQYIEM 201 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCH----HHHHHHHHSCBTTEEEE------EEGGGGTTCSCGGGEEEE
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcc----cHHHHHHHcCCeeeeec------CCHHHHHHhhcCCceEEE
Confidence 9999999999882111 678999999999998 45666677798876543 477888888888899999
Q ss_pred EecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCccc-CCCCCCCCcEEEecccCCCCCCc--eeEEEEe-cccccc
Q 012718 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV-VDVQGLDADFLVASSHKMCGPTG--IGFLFGK-SDLLSA 289 (458)
Q Consensus 214 ~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~-~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~-~~~~~~ 289 (458)
+++++||||.+++ + +++ ++..+.|+++..+..+ .++. .+.+++++|+||.+|++| +||++++ +++++.
T Consensus 202 l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~ 273 (427)
T 2hox_A 202 VTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYK-ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNN 273 (427)
T ss_dssp EESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHH
T ss_pred EcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccC-CCceEEEEeChhcCCCCCceEEEEEECCHHHHHH
Confidence 9999999999999 4 233 5678889887532221 2232 468999999999999888 8999995 677766
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH----------HhCHHHHHHHHHHHHHHHHHH
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS----------TIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~----------~~g~~~~~~~~~~l~~~l~~~ 359 (458)
+......+ ..+.+.....++..+|+... +.-+++.+++++++++++.+.
T Consensus 274 l~~~~~~~---------------------~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (427)
T 2hox_A 274 LLNYMTKN---------------------TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITAL 332 (427)
T ss_dssp HHHHHHHH---------------------TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---------------------CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 65432210 11233333334444554321 112456778888999999999
Q ss_pred HhcCCCEEE--eC-CCC-----CCcCccccEEEEEeCCCChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 360 LLSIPNIRI--YG-PKP-----SEHVQRAALCSFNVENIHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 360 L~~~~~~~~--~~-~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
|++++++++ +. +.. ......+.++|++++. +..++++.+. ++ ||.+++|..|.. .++++|||
T Consensus 333 L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~-gI~v~pg~~f~~-------~~~~~Ris 403 (427)
T 2hox_A 333 LDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNG-RINTQNGVGFEA-------SSRYVRLS 403 (427)
T ss_dssp HTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHT-TEECEEGGGGTS-------CTTEEEEE
T ss_pred HHhCcCccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHC-CEEEcCCCccCC-------CCCEEEEE
Confidence 999888876 22 110 0001125588899875 4456777765 55 999999885532 26799999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHh
Q 012718 431 LHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++ ++++++++++++|.+++++
T Consensus 404 ~~--~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 404 LI--KTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp CS--SCHHHHHHHHHHHHHHHTC
T ss_pred ec--CCHHHHHHHHHHHHHHHhh
Confidence 99 5889999999999998754
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-24 Score=212.94 Aligned_cols=338 Identities=13% Similarity=0.062 Sum_probs=227.4
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+..|+|..+ .|..++.+.+++.+.+.+..... ... ....+..+++.+.++++++.+.+ +|+|++|+++
T Consensus 49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~--~~~---~~~~~~~~~la~~l~~~~~~~~~-~v~~~~ggse 122 (459)
T 4a6r_A 49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYN--TFF---KTTHPAVVELSSLLAEVTPAGFD-RVFYTNSGSE 122 (459)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCC--TTS---SSCCHHHHHHHHHHHHHSCTTCC-EEEEESSHHH
T ss_pred CCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccc--ccc---ccCCHHHHHHHHHHHHhCCCCCC-EEEEeCchHH
Confidence 345666543 34568999999999987643111 100 01234556788999999987655 9999999999
Q ss_pred HHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHH---------cCCeEEEEeCCC-----CCCCC-----
Q 012718 141 AINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQK---------TGANLKFLNLND-----DESPD----- 197 (458)
Q Consensus 141 a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~---------~g~~~~~v~~~~-----~~~~d----- 197 (458)
|+..++..+... .-.++++|++.+++|++.......+... ....+..++... ++ .|
T Consensus 123 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~ 201 (459)
T 4a6r_A 123 SVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFG 201 (459)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHH
Confidence 999999887310 0025789999999999876443332100 011344454332 11 34
Q ss_pred ---HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCC
Q 012718 198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA 261 (458)
Q Consensus 198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~ 261 (458)
+++|++.+. +++++|+++.+++++|.+.+ +++|.++|++||+++|+|++|. +|... .+.....+
T Consensus 202 ~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~p 281 (459)
T 4a6r_A 202 VVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQP 281 (459)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCC
Confidence 788888886 46688889888888998887 9999999999999999999987 43221 11123347
Q ss_pred cEEEecccCCCCC--CceeEEEEeccccccCC---CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMCGP--TGIGFLFGKSDLLSAMP---PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 262 d~~~~s~~K~~gp--~g~G~l~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
|+++ ++|.+++ -.+|++++++++++.+. ....+.. .+.+....++..++|+.
T Consensus 282 di~t--~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t---------------------~~~~~~~~aaa~aal~~ 338 (459)
T 4a6r_A 282 DLFT--AAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFT---------------------YSGHPVCAAVAHANVAA 338 (459)
T ss_dssp SEEE--ECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHH---------------------HCSCHHHHHHHHHHHHH
T ss_pred Ceee--hhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCC---------------------CCCCHHHHHHHHHHHHH
Confidence 8776 6696554 34899999998877664 2222111 13455666666677877
Q ss_pred HHHhC-HHHHH-HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC------------hHHHHHHHhhh
Q 012718 337 LSTIG-MQKIH-AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH------------PTDIATLLDQQ 402 (458)
Q Consensus 337 ~~~~g-~~~~~-~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~l~~~ 402 (458)
+.+.+ +++++ +....+.+.|.+.|.+.+.+...... +.++.+.+.... ..++.+.+.++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 411 (459)
T 4a6r_A 339 LRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGV-------GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN 411 (459)
T ss_dssp HHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEE-------TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-------EEEEEEEEecCccccccccchHHHHHHHHHHHHHC
Confidence 65543 33444 45555556665666666656544332 668888775311 45788888888
Q ss_pred cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 403 YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 403 ~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
||.++++. +++||++++..+++|+++++++|+++++++.
T Consensus 412 -Gv~v~~~g-------------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 412 -NLIMRACG-------------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp -TEECEEET-------------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CeEEecCC-------------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998641 6899999988999999999999999987653
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=215.40 Aligned_cols=293 Identities=15% Similarity=0.101 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCE--EEEcCCCCccchHHHHHHHHHcCCeEEE
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDE--VILTVAEHHSAIVPWQLVAQKTGANLKF 187 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~--vl~~~~~~~s~~~~~~~~a~~~g~~~~~ 187 (458)
....+++++.+++++|.+ ..++++||++|+.+++.++ .++||. |+++.+.|.+.. .....+...|++++.
T Consensus 47 ~~~~~~l~~~la~~~~~~---~~i~~~~g~~a~~~a~~~~----~~~g~~~vvi~~~~~~~~~~-~~~~~~~~~g~~~~~ 118 (359)
T 3pj0_A 47 GAVIEDFETKIAKILGKQ---SAVFFPSGTMAQQIALRIW----ADRKENRRVAYHPLSHLEIH-EQDGLKELQQITPLL 118 (359)
T ss_dssp SHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----HHHHTCCEEEECTTCHHHHS-STTHHHHHHCCEEEE
T ss_pred CHHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH----HhcCCCcEEEEeccceeeeh-hcchHHHhcCceEEe
Confidence 455678999999999986 3466789999999999887 466775 555555544321 111222445999999
Q ss_pred EeCCCCCCCCHHHHHHhhcCCceEEEEecccCcC-cccccHHH---HHHHHHhcCcEEEEeccccCCcc------cCCCC
Q 012718 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML-ASILPIEE---IVHWSHDVGAKVLVDACQSVPHM------VVDVQ 257 (458)
Q Consensus 188 v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t-G~~~~l~~---i~~l~~~~~~~vivD~a~~~g~~------~~~~~ 257 (458)
++. +++.+|+++++++ .+++++|++++++||+ |.++|.++ |.++|++||+++|+|++|..+.. +.++.
T Consensus 119 v~~-~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 196 (359)
T 3pj0_A 119 LGT-ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC 196 (359)
T ss_dssp CSC-TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH
T ss_pred cCC-cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh
Confidence 987 5678899999988 7789999999999998 79888555 59999999999999999875432 11111
Q ss_pred CCCCcEEEecccCCCC-CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 258 GLDADFLVASSHKMCG-PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 258 ~~~~d~~~~s~~K~~g-p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
.+.|+++.|+||.++ |.| |+++.++++++.+.......+ ....+.+....+++ .+++.
T Consensus 197 -~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~a~~-~~l~~ 255 (359)
T 3pj0_A 197 -ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYG------------------GDLISLYPYILSAD-YYFEK 255 (359)
T ss_dssp -TTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT------------------CCCSCCHHHHHHHH-HHHHH
T ss_pred -ccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhC------------------CCcchhHHHHHHHH-HHHHH
Confidence 357999999999655 544 888888888776653211000 00011122222222 23322
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCC
Q 012718 337 LSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
. . +..++..++++++.+.|++++++++...+.. ++++++.++.. +..++.+.|.++ ||.+++|..+
T Consensus 256 ~----~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~~-GV~v~~g~~~ 324 (359)
T 3pj0_A 256 R----I-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPV-----SNMFHVYFENSADEIGAILTKIQDET-GVGISGYLQE 324 (359)
T ss_dssp H----G-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCS-----SSEEEEEESSCHHHHHHHHHHHHHHH-CEECCSCCEE
T ss_pred H----H-HHhHHHHHHHHHHHHHHhhCCCceeeccCCc-----ceEEEEEecCccchhHHHHHHHHHhc-CcEecCCccc
Confidence 2 2 2334467788999999999999998532222 66788887642 356788889888 9999988643
Q ss_pred ChhhHhhcCCCCeEEEeeCC---CCCHHHHHHHHHHHHHH
Q 012718 414 AQPLHRYLGVNASARASLHF---YNTKEDVDEFIHALNET 450 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~---~~t~~di~~l~~~l~~~ 450 (458)
.. ...+++|++++. ..+.+++++.+++|.+.
T Consensus 325 ~~------~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 325 KS------ADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EE------TTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cC------CCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 21 114689998863 24788898888888765
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-26 Score=219.55 Aligned_cols=291 Identities=13% Similarity=0.090 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC--EEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD--EVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~--~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
...+++++.+++++|.+ ..++++||++|+.+++.++ .++|| .|+++.+.|.+.... ...+...|++++.+
T Consensus 47 ~~~~~l~~~la~~~~~~---~~i~~~~G~~a~~~al~~~----~~~gd~~~vi~~~~~~~~~~~~-~~~~~~~g~~~~~v 118 (357)
T 3lws_A 47 AIIEPFEQKFADVLGMD---DAVFFPSGTMAQQVALRIW----SDETDNRTVAYHPLCHLEIHEQ-DGLKELHPIETILV 118 (357)
T ss_dssp TTHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----HHHHTCCEEEECTTCHHHHSST-THHHHHSSCEEEEC
T ss_pred hHHHHHHHHHHHHhCCC---cEEEecCcHHHHHHHHHHH----hhcCCCcEEEecccceeeeecc-chhhhccCcEEEEe
Confidence 34568889999999985 4566688999999998887 56777 677777766543211 11334558999888
Q ss_pred eCCCCCCCCHHHHHHhhcCCceEEEEecccCcC-ccccc---HHHHHHHHHhcCcEEEEeccccCC------cccCCCCC
Q 012718 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSVP------HMVVDVQG 258 (458)
Q Consensus 189 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~vivD~a~~~g------~~~~~~~~ 258 (458)
+. +++.+|+++++++. ++++|++++++||+ |.+++ +++|+++|++||+++|+|++|..+ .....+.
T Consensus 119 ~~-~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~- 194 (357)
T 3lws_A 119 GA-ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA- 194 (357)
T ss_dssp SC-TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-
T ss_pred cC-CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-
Confidence 84 45778999999884 38999999999998 99887 889999999999999999998621 1111111
Q ss_pred CCCcEEEecccCCC-CCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH
Q 012718 259 LDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 259 ~~~d~~~~s~~K~~-gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
...|+++.|+||.+ ||.| |+++.++++++.+.......+ ....+.+.....++ .+++..
T Consensus 195 ~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~-~~l~~~ 254 (357)
T 3lws_A 195 GLFDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYG------------------GDLISLYPYIVSAD-YYYELR 254 (357)
T ss_dssp TTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT------------------CCCSCCHHHHHHHH-HHHHHH
T ss_pred hcCCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhc------------------CCcccchHHHHHHH-HHHHHH
Confidence 24788999999977 6777 999998887766543221000 00011222222222 333321
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC---ChHHHHHHHhhhcCeEeccCCCCC
Q 012718 338 STIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI---HPTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 338 ~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
.+.+ ++..++++++.+.|++++++++...++. ++++++.+++. +..++.+.|.++ ||.+++|..+.
T Consensus 255 ----~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~g~~~~ 323 (357)
T 3lws_A 255 ----KDRM-GQYYEQAKQLAEQFNALPGVHTTPEVPV-----SNMFHLHFDGQAADISPKLEQVQEET-GLGFVGYLVDK 323 (357)
T ss_dssp ----TTCH-HHHHHHHHHHHHHHHTSTTEEEESSSCS-----SSEEEEEEESCHHHHHHHHHHHHHHH-CEESCSCCEEC
T ss_pred ----HHHH-HHHHHHHHHHHHHHHhCCCCeeccCCCc-----ceEEEEEecCChHHHHHHHHHHHHhc-CeEEecccccC
Confidence 1222 3356778899999999999998533322 67888888753 256788889888 99999885321
Q ss_pred hhhHhhcCCCCeEEEeeCCC---CCHHHHHHHHHHHHHHH
Q 012718 415 QPLHRYLGVNASARASLHFY---NTKEDVDEFIHALNETV 451 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~---~t~~di~~l~~~l~~~~ 451 (458)
....++|++++.. .+.+++++.+++|.+++
T Consensus 324 -------~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 324 -------DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp -------SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred -------CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 1134899998743 47889999998888764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=215.86 Aligned_cols=334 Identities=12% Similarity=0.071 Sum_probs=231.1
Q ss_pred EEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHH
Q 012718 69 VYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142 (458)
Q Consensus 69 i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~ 142 (458)
-|+|..+ .|..++.+.+++.+.+.+...... . ....+...++++.++++++...+ +|+|++||++|+
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~-----~~~~~~~~~L~e~la~~~~~~~~-~v~~~~sGseA~ 148 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMF-G-----GLTHEPAARLAKLLVDITPAGLD-TVFFSDSGSVSV 148 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCS-S-----SEECHHHHHHHHHHHHHSSTTEE-EEEEESSHHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccc-c-----ccCCHHHHHHHHHHHHhCCCCcC-EEEEeCcHHHHH
Confidence 5666543 445789999999999876422110 1 11234556899999999976654 999999999999
Q ss_pred HHHHHHcCCC---CC-CCCCEEEEcCCCCccchHHHHHHH----------HHcCCeEEEEeCCCC--CCCCHHHHHHhhc
Q 012718 143 NLVAYSWGLS---NL-KSGDEVILTVAEHHSAIVPWQLVA----------QKTGANLKFLNLNDD--ESPDLDKLKEMLS 206 (458)
Q Consensus 143 ~~~~~~l~~~---~~-~~g~~vl~~~~~~~s~~~~~~~~a----------~~~g~~~~~v~~~~~--~~~d~~~l~~~l~ 206 (458)
+.++..+... .- ..+++|++.+++|++.......+. ......+..++...+ ...|+++|++.++
T Consensus 149 ~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~ 228 (457)
T 3tfu_A 149 EVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLA 228 (457)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHH
Confidence 9999876210 00 234589999999997654333220 111123344444322 2248889999987
Q ss_pred ---CCceEEEEec-ccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCcEEEecccCCCC
Q 012718 207 ---RKTKLVVIHH-ISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADFLVASSHKMCG 273 (458)
Q Consensus 207 ---~~~~~v~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d~~~~s~~K~~g 273 (458)
+++++|+++. ++|++|.+.+ +++|.++|++||+++|+|++|. +|... . +.....+|++ +++|.++
T Consensus 229 ~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~ 306 (457)
T 3tfu_A 229 QHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALT 306 (457)
T ss_dssp HHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGG
T ss_pred hCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhh
Confidence 6789999999 9999999987 9999999999999999999987 43221 1 1123347877 6789554
Q ss_pred C--CceeEEEEeccccccCC---C--ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 274 P--TGIGFLFGKSDLLSAMP---P--FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 274 p--~g~G~l~~~~~~~~~l~---~--~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
+ ..+|++++++++++.+. + +..+ ...+.+....++..++|+.+.+. .+.
T Consensus 307 gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~---------------------~t~~~n~~a~aaa~aaL~~~~~~---~~~ 362 (457)
T 3tfu_A 307 GGYLSLAATLCTADVAHTISAGAAGALMHG---------------------PTFMANPLACAVSVASVELLLGQ---DWR 362 (457)
T ss_dssp TTSSCCEEEEEEHHHHHHHHHSSSCSCCCC---------------------CTTTTCHHHHHHHHHHHHHHHTS---CHH
T ss_pred CCCcceEEEEEcHHHHHHhhccCCCceeEe---------------------cCCCcCHHHHHHHHHHHHHHhhh---HHH
Confidence 4 25899999998876652 1 1111 11245666677777778877653 456
Q ss_pred HHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcC
Q 012718 347 AYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLG 422 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g 422 (458)
++.+++.+++.+.|+++ +++..... .+.++++.+.. .+..++.+.|.++ ||.+++.
T Consensus 363 ~~~~~~~~~l~~~L~~l~~~~~v~~vr~-------~G~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~------------ 422 (457)
T 3tfu_A 363 TRITELAAGLTAGLDTARALPAVTDVRV-------CGAIGVIECDRPVDLAVATPAALDR-GVWLRPF------------ 422 (457)
T ss_dssp HHHHHHHHHHHHHHGGGGGSTTEEEEEE-------CSSCEEEEESSCCCHHHHHHHHHHT-TEECCCB------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeeeec-------CCeEEEEEECCcccHHHHHHHHHHC-CeEEEec------------
Confidence 67777788888887654 44443222 26688888864 3567899999998 9999763
Q ss_pred CCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 423 VNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 423 ~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+++|++++...|++|+++++++|+++++++..
T Consensus 423 -~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~~ 455 (457)
T 3tfu_A 423 -RNLVYAMPPYICTPAEITQITSAMVEVARLVGS 455 (457)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 358999999888999999999999999987643
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-24 Score=211.42 Aligned_cols=341 Identities=14% Similarity=0.121 Sum_probs=223.4
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+.-|+|..+ .|..++.+.+++.+.+.+..... . .....+...++.+.++++++.+..++|+||+||++
T Consensus 63 G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~---~---~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGse 136 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTC---F---MVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAE 136 (453)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCT---T---TTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHH
T ss_pred CCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccc---c---CcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHH
Confidence 345666543 34568999999999987642211 0 01123455678899999998653348999999999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-----cC-----CeEEEEeCCCCC----CCC--------H
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG-----ANLKFLNLNDDE----SPD--------L 198 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~g-----~~~~~v~~~~~~----~~d--------~ 198 (458)
|+..++..+. ...++++|++.+++||+.......+... .+ ..+..++..... ..+ +
T Consensus 137 A~~~alk~a~--~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (453)
T 4ffc_A 137 AVENAIKVAR--LATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAI 214 (453)
T ss_dssp HHHHHHHHHH--HHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHH--HhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHH
Confidence 9999997652 1135689999999999876544433110 01 145666654211 112 3
Q ss_pred HHHHHhhcC-CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCCcEEEecc
Q 012718 199 DKLKEMLSR-KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDADFLVASS 268 (458)
Q Consensus 199 ~~l~~~l~~-~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~d~~~~s~ 268 (458)
+.+++.+.+ ++++|+++..++..|.+.+ +++|.++|++||+++|+|++|. +|... . +.....+|+++ +
T Consensus 215 ~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t--~ 292 (453)
T 4ffc_A 215 SRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVT--M 292 (453)
T ss_dssp HHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--E
T ss_pred HHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHh--h
Confidence 556666654 4577777777767777776 9999999999999999999987 43221 1 11123467665 6
Q ss_pred cCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHH
Q 012718 269 HKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIH 346 (458)
Q Consensus 269 ~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~ 346 (458)
+|.+++ -.+|++++++++++.+.+...+. ..+.+....++..++++.+...+ .++++
T Consensus 293 sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~---------------------t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 351 (453)
T 4ffc_A 293 AKGIAGGMPLSAVTGRAELMDAVYAGGLGG---------------------TYGGNPVTCAAAVAALGVMRELDLPARAR 351 (453)
T ss_dssp CGGGGTTSSCEEEEEEHHHHTTSCTTSSCC---------------------SSSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhhcCCcCeEEEEECHHHHhhhcccCcCC---------------------CCCcCHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 796654 23899999999887776543211 12455666666677777765533 23344
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC--------CChHHHHHHHhhhcCeEeccCCCCChhhH
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN--------IHPTDIATLLDQQYGVATRSGHHCAQPLH 418 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~ 418 (458)
+....+.+.|.+.+.+++.+..... .+.++++.+.. ....++.+.+.++ ||.+.++...
T Consensus 352 ~~~~~l~~~l~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----- 418 (453)
T 4ffc_A 352 AIEASVTSRLSALAEEVDIIGEVRG-------RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ-GVLILTCGTF----- 418 (453)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEE-------ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECCEECTT-----
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEe-------eceEEEEEEecCcccCCCHHHHHHHHHHHHhC-CCEEecCCCC-----
Confidence 4444444445554455555543322 26688887732 1245688888888 9999876421
Q ss_pred hhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 419 RYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 419 ~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.+|++++...+++|+++++++|+++++++.+
T Consensus 419 -----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 419 -----GNVIRLLPPLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp -----SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred -----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999889999999999999999987653
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=217.21 Aligned_cols=328 Identities=14% Similarity=0.048 Sum_probs=215.7
Q ss_pred CCeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CCC----CCC--cE
Q 012718 66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NAS----DSG--EI 132 (458)
Q Consensus 66 ~~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~----~~~--~v 132 (458)
++.|.|..|.. .++++.+.++.. ....... .+. |....+..++|+++++++ +.. .++ ++
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~-~~~------Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i 100 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYK-EKP------YLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICT 100 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCC-CCC------CCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEE
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCC-CCC------CCCCCCcHHHHHHHHHHHcCCCCccccccceEE
Confidence 46789987752 245788888776 3311111 110 111233457888888876 322 112 36
Q ss_pred EEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CC-CCCCCHHHHHHhhcC--C
Q 012718 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-ND-DESPDLDKLKEMLSR--K 208 (458)
Q Consensus 133 ~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~-~~~~d~~~l~~~l~~--~ 208 (458)
++|.|+++|+.+++.++. .+.+ |+|++++|+|+ .+...++..|++++.+|+ ++ ++.+|++.+++.+++ +
T Consensus 101 ~~t~G~~~al~~~~~~l~--~~~~-d~Vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 173 (405)
T 3k7y_A 101 IQCIGGTGAIFVLLEFLK--MLNV-ETLYVTNPPYI----NHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPN 173 (405)
T ss_dssp EEEEHHHHHHHHHHHHHH--TTTC-CEEEEESSCCH----HHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCS
T ss_pred EEcCchHHHHHHHHHHHH--hcCC-CEEEEeCCCCH----hHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCC
Confidence 899999999999998872 1237 99999999999 556777888999999998 33 477899999999864 5
Q ss_pred ceEEEEecc-cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc--------cC-CC-CCCCCcEEEecccCCCCC
Q 012718 209 TKLVVIHHI-SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------VV-DV-QGLDADFLVASSHKMCGP 274 (458)
Q Consensus 209 ~~~v~~~~~-~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~--------~~-~~-~~~~~d~~~~s~~K~~gp 274 (458)
++++++..+ +||||.+++ +++|+++|++||++||+|++|..-.. ++ .+ ......+++.|+||.||.
T Consensus 174 ~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l 253 (405)
T 3k7y_A 174 GSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSL 253 (405)
T ss_dssp SCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCC
T ss_pred CeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCC
Confidence 578887655 899999999 66788999999999999999872111 01 01 122356888999999998
Q ss_pred Cc--eeEEEE---eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH--H-HH--hCHHH
Q 012718 275 TG--IGFLFG---KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY--L-ST--IGMQK 344 (458)
Q Consensus 275 ~g--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~--~-~~--~g~~~ 344 (458)
+| +||+++ ++++++.+....... .+...++++.....++..+++. + .. ..+.+
T Consensus 254 ~GlRiG~~~~~~~~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~ 316 (405)
T 3k7y_A 254 YGERAGALHIVCKNQEEKKIVFNNLCFI-----------------VRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQ 316 (405)
T ss_dssp TTTTEEEEEEECSSHHHHHHHHHHHHHH-----------------HHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ccccceEEEEEeCCHHHHHHHHHHHHHH-----------------HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88 999875 333333221100000 0011123444444444444432 1 11 12566
Q ss_pred HHHHHHHHHHHHHHHHh----cCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhh
Q 012718 345 IHAYEMELAKYLYENLL----SIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPL 417 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~----~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~ 417 (458)
+++++++.++.+.+.|+ ++. ++++..+. .+.++|+.++. ++++.|. ++||.+.|+
T Consensus 317 ~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~------gg~f~~~~l~~----~~~~~L~-~~gV~v~p~------- 378 (405)
T 3k7y_A 317 LSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQ------RGLFSFVPLLA----KIAEHLK-THHIYIINN------- 378 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSC------CSSEEECGGGG----GGTTTTT-TTTEECCTT-------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCC------ceEEEecCCCH----HHHHHHH-HCCEeecCC-------
Confidence 77888999999999998 762 14444433 14477766542 4456674 449999764
Q ss_pred HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 418 HRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 418 ~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
. |||++. .++++|++++++|++++++
T Consensus 379 --------~-Ris~a~-~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 379 --------G-RINVSG-ITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp --------S-EEEGGG-CCTTHHHHHHHHHHHHHHC
T ss_pred --------C-eEEEec-cCHHHHHHHHHHHHHHHhh
Confidence 1 999974 5778999999999999875
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=219.42 Aligned_cols=323 Identities=13% Similarity=0.076 Sum_probs=212.5
Q ss_pred CCeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CCCC----CCcEE--EeC
Q 012718 66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASD----SGEIV--FTK 136 (458)
Q Consensus 66 ~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~~----~~~v~--~t~ 136 (458)
++++.|..+.. . +.++.+.+++.+.. .. +.+ ++.......++|+++++++ |... +++|. .|.
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~---~~----~~~--~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~ 111 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQAT---LG----TNM--DYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTL 111 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCC---CC----SCC--CCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEES
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcC---cc----ccc--cCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecc
Confidence 45677877764 3 33444555555541 11 111 1111233457889999876 6541 23674 599
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC--CCCCCCHHHHHHhhc---CCceE
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLS---RKTKL 211 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~---~~~~~ 211 (458)
++++++..+...+. ...++||+|++++|+|.+ +...++..|++++.+++. +++.+|++++++.++ +++++
T Consensus 112 ~g~ga~~~~~~~~~-~~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 186 (409)
T 4eu1_A 112 GGTGALRIGGDLLN-RFVANCNRIYGPDVGYPN----HESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVI 186 (409)
T ss_dssp HHHHHHHHHHHHGG-GTSSSCCEEEEESSCCTH----HHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEE
T ss_pred cchHHHHHHHHHHH-HhcCCCCEEEEeCCCcHh----HHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEE
Confidence 99999998755432 125789999999999994 466667789999999983 457789999999986 35677
Q ss_pred EEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc--------cC-CC-CCCCCcEEEecccCCCCCCc--
Q 012718 212 VVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM--------VV-DV-QGLDADFLVASSHKMCGPTG-- 276 (458)
Q Consensus 212 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~--------~~-~~-~~~~~d~~~~s~~K~~gp~g-- 276 (458)
+++++++||||.+++ +++|+++|+++|+++|+|++|+.... ++ .+ ......++++|+||.+|++|
T Consensus 187 i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r 266 (409)
T 4eu1_A 187 LVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHR 266 (409)
T ss_dssp EEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGC
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCC
Confidence 888999999999999 45699999999999999999874321 11 11 22335678899999999777
Q ss_pred eeEE--EEe-cc----ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-----HhCHHH
Q 012718 277 IGFL--FGK-SD----LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-----TIGMQK 344 (458)
Q Consensus 277 ~G~l--~~~-~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~ 344 (458)
+|++ ++. ++ +++.+..... ....+++.....++..+++... ...+++
T Consensus 267 iG~~~~v~~~~~~~~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 325 (409)
T 4eu1_A 267 CGALHISTASAEEAKRLVSQLALLIR---------------------PMYNNPPLYGAWVVSSILKDPQLTALWKKELKQ 325 (409)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHH---------------------HHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHh---------------------hhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8997 554 44 4343332211 0012344445555555554211 112677
Q ss_pred HHHHHHHHHHHHHHHHhcCCC----EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhh
Q 012718 345 IHAYEMELAKYLYENLLSIPN----IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRY 420 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~ 420 (458)
.+++++++++++.+.|+++ + +++..+. .+.+++..+ +. ++...+.+++||.+.++
T Consensus 326 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~------~~~~~~~~~---~~-~~~~~ll~~~gv~v~p~---------- 384 (409)
T 4eu1_A 326 MSSRIAEVRKRLVSELKAC-GSVHDWSHIERQ------VGMMAYTGL---TR-EQVELLRSEYHIYMTLN---------- 384 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCSCCHHHHHS------CSSEEECCC---CH-HHHHHHHHHHCEECCTT----------
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCcceecCC------ceEEEEeCC---CH-HHHHHHHHcCCEEEcCC----------
Confidence 8889999999999999886 3 4443332 133444333 33 44555553339998753
Q ss_pred cCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 421 LGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 421 ~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.||+++. .+.+|+++++++|++++
T Consensus 385 ------~Ri~~~~-~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 ------GRAAVSG-LNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ------CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred ------CEEEEEe-cCHhhHHHHHHHHHHHh
Confidence 3888875 45678999999999876
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-24 Score=211.36 Aligned_cols=339 Identities=12% Similarity=0.106 Sum_probs=220.8
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|..+ .|..++.+.+++.+.+.+.... .. .....+...++.+.++++++....++|+||+|||
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~---~~---~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGs 132 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHT---CF---MVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGS 132 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCC---TT---TTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHH
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccc---cC---CccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHH
Confidence 3445676543 3456899999999987653211 10 0112345567888999998755334899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-----cC-----CeEEEEeCCCC------CC-------C
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG-----ANLKFLNLNDD------ES-------P 196 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~g-----~~~~~v~~~~~------~~-------~ 196 (458)
+|+..++..+. ....+++|++.+++||+.......+... .+ ..+..++.... +. .
T Consensus 133 eA~~~Alk~a~--~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 210 (451)
T 3oks_A 133 EAVENAVKIAR--SHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGEL 210 (451)
T ss_dssp HHHHHHHHHHH--HHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHH
T ss_pred HHHHHHHHHHH--HhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHH
Confidence 99999997762 1135689999999999876544433110 01 14566665411 00 1
Q ss_pred CHHHHHHhhc-----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCc
Q 012718 197 DLDKLKEMLS-----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDAD 262 (458)
Q Consensus 197 d~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d 262 (458)
+++.+++.+. .++++|+++.+++..|.+.+ +++|.++|++||+++|+|++|. ++.. ..+.....+|
T Consensus 211 ~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd 290 (451)
T 3oks_A 211 AAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPD 290 (451)
T ss_dssp HHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCC
Confidence 2444444443 35678888888888888877 9999999999999999999997 3321 1122233477
Q ss_pred EEEecccCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 263 FLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 263 ~~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
++ +++|.+++ -.+|++++++++++.+.+...+. ..+.+.....+..++++.+.+.+
T Consensus 291 i~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~---------------------t~~~~~~~~aaa~aal~~~~~~~ 347 (451)
T 3oks_A 291 LI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGG---------------------TYGGNPIACAAALATIETIESEG 347 (451)
T ss_dssp EE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSBCC---------------------SSSSCHHHHHHHHHHHHHHHHTT
T ss_pred ee--eehhhhhCCcceEEEEECHHHHhhhcCCCcCC---------------------CCCCCHHHHHHHHHHHHHHhhhh
Confidence 76 57796654 23899999999887776543211 12456666667677787765532
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC--------CChHHHHHHHhhhcCeEeccCCC
Q 012718 342 -MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN--------IHPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 342 -~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
.+++++....+.+.|.+.+.+.+.+..... .+.++++.+.. ....++.+.+.++ ||.+.++..
T Consensus 348 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-------~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~ 419 (451)
T 3oks_A 348 LVARAQQIEKIMKDRLGRLQAEDDRIGDVRG-------RGAMIAMELVKAGTTEPDADLTKALCAGAHAA-GVIVLSCGT 419 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-------ETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHT-TEECEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE-------eeEEEEEEEecCccCCCCHHHHHHHHHHHHhC-CcEEecCCC
Confidence 233344444444444444445555543322 26688887732 1245688888888 999987542
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+ .+.+|++++...+++|+++++++|++++++
T Consensus 420 ~----------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 420 Y----------GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp T----------SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred C----------CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 468999999889999999999999998864
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=208.19 Aligned_cols=336 Identities=12% Similarity=0.017 Sum_probs=226.4
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|..+ .|..++.+.+++.+.+.+......... ...+...++.+.|+++++.+.+ +|+|++||+
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~-----~~~~~~~~lae~l~~~~~~~~~-~v~~~~sGs 126 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFK-----TTHVPAIALAQKLAELAPGDLN-HVFFAGGGS 126 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSS-----EECHHHHHHHHHHHHHSCTTEE-EEEEESSHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccc-----cCCHHHHHHHHHHHHhCCCCCC-EEEEeCCHH
Confidence 3445676543 455689999999999877431110000 1234456788999999876544 999999999
Q ss_pred HHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHH----H----cCCeEEEEeCCC-----CCCCC-----
Q 012718 140 EAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQ----K----TGANLKFLNLND-----DESPD----- 197 (458)
Q Consensus 140 ~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~----~----~g~~~~~v~~~~-----~~~~d----- 197 (458)
+|+..++..+... ...++++|++.+++|++.......+.. + ....+..++... ++ .|
T Consensus 127 eA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~ 205 (472)
T 3hmu_A 127 EANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFG 205 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHH
Confidence 9999999887310 002578999999999987644332210 0 011345555432 11 23
Q ss_pred ---HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCC
Q 012718 198 ---LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDA 261 (458)
Q Consensus 198 ---~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~ 261 (458)
+++|++.++ +++++|+++.+++++|.+.+ +++|.++|+++|+++|+|++|. +|... .+.....+
T Consensus 206 ~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~p 285 (472)
T 3hmu_A 206 LARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRP 285 (472)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCC
Confidence 778888886 46789999999999999987 9999999999999999999997 43321 11123347
Q ss_pred cEEEecccCCCCCC--ceeEEEEeccccccCCC--ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMCGPT--GIGFLFGKSDLLSAMPP--FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYL 337 (458)
Q Consensus 262 d~~~~s~~K~~gp~--g~G~l~~~~~~~~~l~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~ 337 (458)
|+++ ++|.++.. .+|++++++++++.+.+ +..++ ..+.+....++..++|+.+
T Consensus 286 di~t--~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~---------------------t~~~np~a~aAa~aaL~~~ 342 (472)
T 3hmu_A 286 HIMT--IAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGY---------------------TYSGHPVAAAVALENLRIL 342 (472)
T ss_dssp SEEE--ECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCC---------------------TTTTCHHHHHHHHHHHHHH
T ss_pred ceee--echhhhcCCcceEEEEECHHHHHhcccCCccccC---------------------CCCCCHHHHHHHHHHHHHH
Confidence 8876 56966543 48999999988776632 11110 1235566667777778777
Q ss_pred HHhCHHHHHHHHH-HHHHHHHHHHhc---CCCEEEeCCCCCCcCccccEEEEEeCCCC-------------hHHHHHHHh
Q 012718 338 STIGMQKIHAYEM-ELAKYLYENLLS---IPNIRIYGPKPSEHVQRAALCSFNVENIH-------------PTDIATLLD 400 (458)
Q Consensus 338 ~~~g~~~~~~~~~-~l~~~l~~~L~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~l~ 400 (458)
.+. .+.++.+ ++.+++.+.|++ .+.+..... .+.++.+.+.... ..++.+.|.
T Consensus 343 ~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~-------~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 412 (472)
T 3hmu_A 343 EEE---NILDHVRNVAAPYLKEKWEALTDHPLVGEAKI-------VGMMASIALTPNKASRAKFASEPGTIGYICRERCF 412 (472)
T ss_dssp HHT---THHHHHHHTHHHHHHHHHHGGGGSTTEEEEEE-------ETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHH
T ss_pred HHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-------cCceEEEEEecCccccccccchhHHHHHHHHHHHH
Confidence 553 4455555 666666666654 344443322 2668888775310 456788888
Q ss_pred hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 401 QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 401 ~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
++ ||.++++ .+++||++++..+++|+++++++|+++++++.
T Consensus 413 ~~-Gv~v~~~-------------g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 413 AN-NLIMRHV-------------GDRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp HT-TBCCEEE-------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HC-CcEEEec-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88 9998764 16899999988999999999999999987653
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=222.83 Aligned_cols=341 Identities=15% Similarity=0.091 Sum_probs=215.0
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
.+..|+|..+..+. +.+.+++.+.+.. +... +.......+++++++++++.+ ++++|+|||+|+.++
T Consensus 39 ~~~~ylD~~~~~~~-~~v~~a~~~~l~~-------~~~~--y~~~~~~~~l~~~la~~~~~~---~v~~t~~gt~A~~~a 105 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-GAVTQSMQAAMMR-------GDEA--YSGSRSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIY 105 (467)
T ss_dssp GGGCSEECSCCSSC-SCCCHHHHHHTTS-------CCCC--SSSCHHHHHHHHHHHHHHCCS---EEEEEC--CCSHHHH
T ss_pred CCCeeEecccCCCc-HHHHHHHHHHhcc-------Ccce--eccCchhHHHHHHHHHHhCcC---cEEEcCCcHHHHHHH
Confidence 34567887655544 6666776666432 1000 111234567899999999874 899999999999999
Q ss_pred HHHcCCCCCCC-----C----CEEEEcCCCCccchHHHHHHHHHcCCeEEEEe------CC----CCCCCCHHHHHHhhc
Q 012718 146 AYSWGLSNLKS-----G----DEVILTVAEHHSAIVPWQLVAQKTGANLKFLN------LN----DDESPDLDKLKEMLS 206 (458)
Q Consensus 146 ~~~l~~~~~~~-----g----~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~------~~----~~~~~d~~~l~~~l~ 206 (458)
+.++ .++ | |+|++. ..|.... .......|+.+.... .+ .++.+|+++|+++++
T Consensus 106 l~~~----~~~~~~~~G~~~~d~Ii~~-~~h~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~ 177 (467)
T 2oqx_A 106 IPVL----IKKREQEKGLDRSKMVAFS-NYFFDTT---QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIE 177 (467)
T ss_dssp HHHH----HHHHHHHHCCCTTTCEEEE-SSCCHHH---HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHH
T ss_pred HHHH----hccccccCCCCccceEEec-ccccccc---hhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHH
Confidence 9987 345 6 887776 4554322 223344566655432 12 246689999999997
Q ss_pred C----CceEEEEecccCcC-ccccc---HHHHHHHHHhcCcEEEEeccccC-----------CcccCCCCC------CCC
Q 012718 207 R----KTKLVVIHHISNML-ASILP---IEEIVHWSHDVGAKVLVDACQSV-----------PHMVVDVQG------LDA 261 (458)
Q Consensus 207 ~----~~~~v~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~vivD~a~~~-----------g~~~~~~~~------~~~ 261 (458)
+ ++++|++++++|++ |.+++ +++|+++|++||+++|+|++|+. +....+... ...
T Consensus 178 ~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 257 (467)
T 2oqx_A 178 EVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYA 257 (467)
T ss_dssp HHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGC
T ss_pred hcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccC
Confidence 3 78999999999998 77776 77999999999999999987765 222222111 236
Q ss_pred cEEEecccCCCCCCceeEEEEecc-cccc---CCCcc-ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMCGPTGIGFLFGKSD-LLSA---MPPFL-GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY 336 (458)
Q Consensus 262 d~~~~s~~K~~gp~g~G~l~~~~~-~~~~---l~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 336 (458)
|++++|+||.+|++-.|+++.+++ +++. +.+.. .+++ ..+.++.+...+.++..+++.
T Consensus 258 d~~~~s~sK~~g~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~al~~~l~~ 320 (467)
T 2oqx_A 258 DMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEG-----------------FPTYGGLEGGAMERLAVGLYD 320 (467)
T ss_dssp SEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTS-----------------SCCCCCCCHHHHHHHHHHHHH
T ss_pred CeEEEecccccCCCCceEEEecChhHHHHHHHHHHhhhccCC-----------------cccccchhhhHHHHHHHhhHh
Confidence 888999999887542377777766 3332 22221 1111 011233443333333322221
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC----CCC-----hHHHHHHH-hhhcCeE
Q 012718 337 LSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE----NIH-----PTDIATLL-DQQYGVA 406 (458)
Q Consensus 337 ~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~-----~~~~~~~l-~~~~gi~ 406 (458)
. .. +...++..++.+++.+.|.++ ++++. +. .+.++++.++ +.+ ..++.+.| .++ ||.
T Consensus 321 ~--~~-~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-gv~ 388 (467)
T 2oqx_A 321 G--MN-LDWLAYRIAQVQYLVDGLEEI-GVVCQ-QA------GGHAAFVDAGKLLPHIPADQFPAQALACELYKVA-GIR 388 (467)
T ss_dssp T--TC-HHHHHHHHHHHHHHHHHHHHT-TCCEE-EE------CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHH-CEE
T ss_pred h--hh-HHHHHHHHHHHHHHHHHHHHC-CCeee-cC------CceEEEEechhhcccCCcccccHHHHHHHHHHhc-Cce
Confidence 1 11 123344567788899999887 77766 43 1567888773 333 23458888 777 999
Q ss_pred eccCCCCChhhHh-----hcCCCCeEEEeeCCC-CCHHHHHHHHHHHHHHHHhhhc
Q 012718 407 TRSGHHCAQPLHR-----YLGVNASARASLHFY-NTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 407 ~~~g~~~~~~~~~-----~~g~~~~lRis~~~~-~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+.++..|...... .....+++|++++.. ++++||++++++|++++++.++
T Consensus 389 ~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 444 (467)
T 2oqx_A 389 AVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAAN 444 (467)
T ss_dssp CEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGGG
T ss_pred ecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 9875422110000 000137999999988 9999999999999999987653
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-24 Score=209.56 Aligned_cols=327 Identities=17% Similarity=0.138 Sum_probs=215.4
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+.-|+|..+ .|..++.+.+++.+.+.+...+ + + ......++++.++++++ .. ++|+|++|||+
T Consensus 54 g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~-~-----~~~~~~~l~~~la~~~~-~~-~~v~~~~sGse 122 (434)
T 3l44_A 54 GNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLY---G-T-----PTALEVKFAKMLKEAMP-AL-DKVRFVNSGTE 122 (434)
T ss_dssp CCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCC---S-S-----CCHHHHHHHHHHHHHCT-TC-SEEEEESSHHH
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCC---C-C-----CCHHHHHHHHHHHHhCC-CC-CEEEEeCchHH
Confidence 445666543 2346899999999988763111 1 0 12345578889999987 33 49999999999
Q ss_pred HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH----------------cCCeEEEEeCCCCCCCCHHHHHHh
Q 012718 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK----------------TGANLKFLNLNDDESPDLDKLKEM 204 (458)
Q Consensus 141 a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~----------------~g~~~~~v~~~~~~~~d~~~l~~~ 204 (458)
|+..++..+. ...++++|++.+++|++........... .+..+..+|.+ |+++|++.
T Consensus 123 a~~~ai~~a~--~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~ 195 (434)
T 3l44_A 123 AVMTTIRVAR--AYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEA 195 (434)
T ss_dssp HHHHHHHHHH--HHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHH
T ss_pred HHHHHHHHHH--HhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHH
Confidence 9999998762 1236789999999998754321111000 00123333332 88999998
Q ss_pred hc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccC---Ccc-cCCCCCCCCcEEEecccCCCC
Q 012718 205 LS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV---PHM-VVDVQGLDADFLVASSHKMCG 273 (458)
Q Consensus 205 l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~---g~~-~~~~~~~~~d~~~~s~~K~~g 273 (458)
++ +++++|+++.+++++|.+.+ +++|.++|++||+++|+|++|.. |.. ..+.....+|++ +++|.+|
T Consensus 196 l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~ 273 (434)
T 3l44_A 196 LDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLT--ALGKVIG 273 (434)
T ss_dssp HHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEE--EEEGGGG
T ss_pred HHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCee--ehhhhhc
Confidence 87 46788999998889999987 99999999999999999999972 211 011112346765 5779655
Q ss_pred -CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 012718 274 -PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 274 -p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l 352 (458)
+-.+|++++++++++.+.+.... ......+.+....++..++++.+.+ +.+.++.+++
T Consensus 274 ~G~~iG~~~~~~~i~~~~~~~~~~------------------~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~ 332 (434)
T 3l44_A 274 GGLPIGAYGGKKEIMEQVAPLGPA------------------YQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDEL 332 (434)
T ss_dssp TTSSCEEEEECHHHHTTBTTTSSB------------------CCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHH
T ss_pred CCcCeeeEEEcHHHHHhhccCCCc------------------ccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHH
Confidence 33499999999887776542100 0011234566666777777776644 3444555555
Q ss_pred HHHHHHHHhc----CCCEEEeCCCCCCcCccccEEEEEeCCCC--------------hHHHHHHHhhhcCeEeccCCCCC
Q 012718 353 AKYLYENLLS----IPNIRIYGPKPSEHVQRAALCSFNVENIH--------------PTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 353 ~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
.+++.+.|.+ .+...... ..+.++++.+.... ..++.+.|.++ ||.++++.
T Consensus 333 ~~~l~~~L~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--- 401 (434)
T 3l44_A 333 GATLEKGILEQAAKHNIDITLN-------RLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPSK--- 401 (434)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEE-------EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSST---
T ss_pred HHHHHHHHHHHHHhCCCCEEEE-------eeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeecC---
Confidence 5555555543 32222111 22668888774211 25678888888 99998764
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 415 QPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+.+|+++ ..+++|+++++++|+++++++++
T Consensus 402 ---------~~~~rl~~--~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 402 ---------YEAWFLTT--EHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp ---------TCCEECCT--TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCcEEEec--ccCHHHHHHHHHHHHHHHHHHHh
Confidence 35688864 47999999999999999987754
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=212.65 Aligned_cols=316 Identities=14% Similarity=0.129 Sum_probs=213.7
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
+..++.+.+++.+.+.... +.+ ...+...++++.++++++ .. ++|+|++|+++|+..++.+.+ .+.+
T Consensus 71 G~~~~~v~~a~~~~~~~~~---~~~------~~~~~~~~l~~~la~~~~-~~-~~v~~~~sgseA~~~al~~ar--~~~~ 137 (434)
T 2epj_A 71 GHKHPRVLEAVEEALARGW---LYG------APGEAEVLLAEKILGYVK-RG-GMIRFVNSGTEATMTAIRLAR--GYTG 137 (434)
T ss_dssp CBTCHHHHHHHHHHHHTCS---CCS------SCCHHHHHHHHHHHHHHC-TT-CEEEEESSHHHHHHHHHHHHH--HHHC
T ss_pred CCCCHHHHHHHHHHHHhCC---CCC------CCCHHHHHHHHHHHHhCC-CC-CEEEEeCCHHHHHHHHHHHHH--HhhC
Confidence 4468999999999887521 111 023455678899999985 33 389999999999999998721 0235
Q ss_pred CCEEEEcCCCCccchHHHHHHH----------HHcCC------eEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEecc
Q 012718 157 GDEVILTVAEHHSAIVPWQLVA----------QKTGA------NLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHI 217 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a----------~~~g~------~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~ 217 (458)
+++|++.+++|++......... ...|+ ++..++.. |++++++.+++ ++++|+++.+
T Consensus 138 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~ 212 (434)
T 2epj_A 138 RDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVFAEYGDRIAGVIVEPV 212 (434)
T ss_dssp CCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSS
T ss_pred CCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHHHHhCCCCEEEEEEeCC
Confidence 6789999999987543211000 01132 35556542 89999998873 6788999888
Q ss_pred cCcCccccc----HHHHHHHHHhcCcEEEEeccccCCcc--c---CCCCCCCCcEEEecccCCCCC-CceeEEEEecccc
Q 012718 218 SNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM--V---VDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLL 287 (458)
Q Consensus 218 ~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~--~---~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~ 287 (458)
++++|.+.| +++|.++|++||+++|+|++|+ |.. . .+.....+|++ |++|.+|+ ..+|+++++++++
T Consensus 213 ~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~ 289 (434)
T 2epj_A 213 IANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSREVM 289 (434)
T ss_dssp BCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHH
T ss_pred cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecHHHH
Confidence 889999998 9999999999999999999998 221 0 01112347765 67897765 2389999999887
Q ss_pred ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC---
Q 012718 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP--- 364 (458)
Q Consensus 288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~--- 364 (458)
+.+.+... . ......+.+...++++.++++.+.+ +.+.++++++.+++.+.|+++.
T Consensus 290 ~~l~~~~~--~----------------~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~ 348 (434)
T 2epj_A 290 SLLTPQGK--V----------------FNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDRT 348 (434)
T ss_dssp TTBTTTSS--B----------------CCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCC--c----------------ccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 76653110 0 0011124666677777788887765 3456677777777777776531
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCCC--------------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVENI--------------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
++....+ ..+.++++.+++. ...++.+.|.++ ||.+.++. ...+|++
T Consensus 349 ~~~~~~~------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------------~~~~~~~ 409 (434)
T 2epj_A 349 GLPYTIN------RVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-GVFIAPSN------------LEAVFTG 409 (434)
T ss_dssp TCCEEEE------EETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST------------TSCEECC
T ss_pred CCcEEEE------EeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHC-CeEEeccC------------CCcEEEe
Confidence 2211111 2267888888641 245788888888 99998764 2245554
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 431 LHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
..++++|+++++++|+++++++.
T Consensus 410 --~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 410 --LPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp --TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCCHHHHHHHHHHHHHHHHHHh
Confidence 55899999999999999988753
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-23 Score=203.38 Aligned_cols=342 Identities=12% Similarity=0.092 Sum_probs=227.9
Q ss_pred CeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhH
Q 012718 67 KLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140 (458)
Q Consensus 67 ~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~ 140 (458)
+.-|+|..+ .|..++.+.+++.+.+.+....... ....+...++.+.++++++...+ .|+|++||++
T Consensus 53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGse 125 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW------YMATSPAARLAEKIATLTPGDLN-RIFFTTGGST 125 (476)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT------TCBCHHHHHHHHHHHTTSSTTCC-EEEEESSHHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC------ccCCHHHHHHHHHHHhcCCCCcC-EEEEeCchHH
Confidence 344666432 4556899999999998764321110 11244566788899999876554 9999999999
Q ss_pred HHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHH------c---CCeEEEEeCCCC--C-CCC-------
Q 012718 141 AINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQK------T---GANLKFLNLNDD--E-SPD------- 197 (458)
Q Consensus 141 a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~------~---g~~~~~v~~~~~--~-~~d------- 197 (458)
|+..++..+... .-..+++|++.++.|++.......+... . ...+..++.... . ..|
T Consensus 126 A~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 205 (476)
T 3i5t_A 126 AVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDD 205 (476)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHH
Confidence 999999887310 0034679999999999876443322100 0 012334442211 1 112
Q ss_pred -HHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCC-CCCCCCc
Q 012718 198 -LDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVD-VQGLDAD 262 (458)
Q Consensus 198 -~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~-~~~~~~d 262 (458)
+++|++.++ +++++|+++.+++++|.+.+ +++|.++|++||+++|+|++|. +|.. ... .....+|
T Consensus 206 ~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pd 285 (476)
T 3i5t_A 206 LVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPD 285 (476)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcc
Confidence 778888886 46789999999999998666 9999999999999999999997 4322 112 2234588
Q ss_pred EEEecccCCCCC--CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh
Q 012718 263 FLVASSHKMCGP--TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI 340 (458)
Q Consensus 263 ~~~~s~~K~~gp--~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 340 (458)
+++ ++|.+|. -.+|++++++++++.+.+....+... ......+.+....++..++++.+.+
T Consensus 286 i~t--~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~--------------~~~~t~~~np~a~aAa~aaL~~~~~- 348 (476)
T 3i5t_A 286 IIT--FAKGVTSGYVPLGGLAISEAVLARISGENAKGSWF--------------TNGYTYSNQPVACAAALANIELMER- 348 (476)
T ss_dssp EEE--ECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEE--------------CCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred hhh--hhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccc--------------cccCCCCcCHHHHHHHHHHHHHHHh-
Confidence 876 5695543 34899999998887776421000000 0001224566667777777877765
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCCCC------------hHHHHHHHhhhcCe
Q 012718 341 GMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVENIH------------PTDIATLLDQQYGV 405 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~l~~~~gi 405 (458)
+.+.++.+++.+++.+.|+.+ +.+..... .+.++.+.+.... ..++.+.+.++ ||
T Consensus 349 --~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~-------~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv 418 (476)
T 3i5t_A 349 --EGIVDQAREMADYFAAALASLRDLPGVAETRS-------VGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFEL-GL 418 (476)
T ss_dssp --TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEE-------ETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHT-TE
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-------cCceeEEEEecCccccccccchhHHHHHHHHHHHHC-CC
Confidence 346667777777777777654 34433222 2667788775421 45678888888 99
Q ss_pred EeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 406 ATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 406 ~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.+++. .+++||++++..+++|+++++++|+++++++.
T Consensus 419 ~v~~~-------------g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 419 IVRPL-------------GDLCVISPPLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp ECEEE-------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEec-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98762 26899999988999999999999999998754
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=207.16 Aligned_cols=259 Identities=16% Similarity=0.131 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHcCCCCCCcEEE--eCChhHHHHHHHHHcCCCCCCCCCEEEEcC-CCCccchHHHH------HHHHHcCC
Q 012718 113 YELARKKVAAFINASDSGEIVF--TKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPWQ------LVAQKTGA 183 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~--t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~-~~~~s~~~~~~------~~a~~~g~ 183 (458)
.+.+++.+|+++|.+. .+++ ++||++|+..++.++ +++||+|+++. +.|.+....+. ..++..|+
T Consensus 61 ~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~al----l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~ 134 (409)
T 3jzl_A 61 RDTLERVYATVFKTEA--ALVRPQIISGTHAISTVLFGI----LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHI 134 (409)
T ss_dssp HHHHHHHHHHHHTCSE--EEEETTSCSHHHHHHHHHHHH----CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTC
T ss_pred HHHHHHHHHHHhCCCc--EEEECCCccHHHHHHHHHHHh----cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCC
Confidence 6678899999999873 4444 899999999999988 78999999998 88886542221 23456799
Q ss_pred eEEEEeCCCCCCCCHHHHHHhhcCCceEEEEec----ccCcCcccccHHHHHHHHHh--cCcEEEEeccccCCcccCCCC
Q 012718 184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHH----ISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVVDVQ 257 (458)
Q Consensus 184 ~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~~~~ 257 (458)
+++.++.++++.+|++++++++++++++|++++ ++||+|.+.|+++|+++|++ +|+++++|++|+.+....+..
T Consensus 135 ~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~ 214 (409)
T 3jzl_A 135 GYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP 214 (409)
T ss_dssp EEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG
T ss_pred EEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCcc
Confidence 999999988899999999999999999999999 99999999999999999999 999999999999776333344
Q ss_pred CCCCcEEEecccCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHH
Q 012718 258 GLDADFLVASSHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAI 334 (458)
Q Consensus 258 ~~~~d~~~~s~~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 334 (458)
..++|++++|+||++|+.| .|+++.++++++.+.......+ .....+... ....+ ++
T Consensus 215 ~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~----------------~g~~~g~~~-~~~~~---~l 274 (409)
T 3jzl_A 215 EVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPG----------------IGREAGASL-YSLLE---MY 274 (409)
T ss_dssp GGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTT----------------TGGGCCCCT-TCHHH---HH
T ss_pred ccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccc----------------ccccccccH-HHHHH---HH
Confidence 5679999999999877654 5999999888776653211000 001111111 11122 23
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhh
Q 012718 335 DYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQ 402 (458)
Q Consensus 335 ~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~ 402 (458)
+.+.. +....++..+++.++.+.|+++ ++++... +. +.++.-+++|.+.+. ....+++.|...
T Consensus 275 ~gl~~--~~~r~~~~~~~a~~la~~L~~~-g~~v~p~-~~-~~~~~~i~~i~l~~~~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 275 QGFFL--APHVTAQAIKGARFTAAMLAEF-GVEADPV-WD-APRTDLIQSVSFHNKEKMVAFAQAIQAA 338 (409)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TT-SCCSSSCCEEECSCHHHHHHHHHHHHHT
T ss_pred HHHhh--HHHHHHHHHHHHHHHHHHHHhC-CCcccCC-CC-CCCccEEEEEEeCCHHHHHHHHHHHHhc
Confidence 33332 3455667788899999999988 6677433 21 122333788888631 234566677655
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=206.51 Aligned_cols=315 Identities=14% Similarity=0.061 Sum_probs=201.6
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
+..++.+.+++.+.+.... +.+ ...+..+++.+.+++.++ .. ++|+|++|+++|+..++.+.+ .+.+
T Consensus 72 g~~~~~v~~a~~~~~~~~~---~~~------~~~~~~~~la~~l~~~~~-~~-~~v~~~~gg~eA~~~al~~ar--~~~~ 138 (453)
T 2cy8_A 72 GHGHPRVNAAIAEALSHGV---QYA------ASHPLEVRWAERIVAAFP-SI-RKLRFTGSGTETTLLALRVAR--AFTG 138 (453)
T ss_dssp CBTCHHHHHHHHHHHTTTC---SSC------SSCHHHHHHHHHHHHHCT-TC-SEEEEESCHHHHHHHHHHHHH--HHHC
T ss_pred CCCCHHHHHHHHHHHHhCC---CCC------CCCHHHHHHHHHHHhhCC-CC-CEEEEeCCHHHHHHHHHHHHH--HhhC
Confidence 3478999999998876421 111 123455667777888776 33 489999999999999998721 0124
Q ss_pred CCEEEEcCCCCccchHHHHHHH-------HHcCC------eEEEEeCCCCCCCCHHHHHHhhc---CCceEEEEecccCc
Q 012718 157 GDEVILTVAEHHSAIVPWQLVA-------QKTGA------NLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHISNM 220 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a-------~~~g~------~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~n~ 220 (458)
+++|++.+++|++......... ...|+ .+..++. .|++++++.++ +++++|+++.++|+
T Consensus 139 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~ 213 (453)
T 2cy8_A 139 RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSH 213 (453)
T ss_dssp CCEEEEECC----------------------------CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHH
T ss_pred CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCC
Confidence 5688899999986544322211 01233 2344443 28999999887 46788888888888
Q ss_pred Cccccc----HHHHHHHHHhcCcEEEEeccccCCccc-----CCCCCCCCcEEEecccCCCCC-CceeEEEEeccccccC
Q 012718 221 LASILP----IEEIVHWSHDVGAKVLVDACQSVPHMV-----VDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAM 290 (458)
Q Consensus 221 tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~~-----~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l 290 (458)
+|.+.| +++|.++|++||+++|+|++|+ |... .+.....+|++ |++|.+++ ..+|++++++++++.+
T Consensus 214 tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l 290 (453)
T 2cy8_A 214 FGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGREDVMGVL 290 (453)
T ss_dssp HHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTS
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHHHHHHh
Confidence 999887 9999999999999999999998 3210 11112346765 67897664 3499999999887776
Q ss_pred CCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHhcC----CC
Q 012718 291 PPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY-LSTIGMQKIHAYEMELAKYLYENLLSI----PN 365 (458)
Q Consensus 291 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~-~~~~g~~~~~~~~~~l~~~l~~~L~~~----~~ 365 (458)
.+...+... .....+.+....+++.++++. + . +.+.++++++.+++.+.|+++ +.
T Consensus 291 ~~~~~~~~~----------------~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 350 (453)
T 2cy8_A 291 SRGSDRKVL----------------HQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFARKGL 350 (453)
T ss_dssp SSCC-------------------------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCce----------------eCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 541100000 011224566666777777776 5 3 345667777777777777553 22
Q ss_pred EEEeCCCCCCcCccccEEEEEeCC-----C------------C---hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVEN-----I------------H---PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~-----~------------~---~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
...... .+.++++.++. . + ..++.+.|.++ ||.+.++ +
T Consensus 351 ~~~~~~-------~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gv~v~~~--------------~ 408 (453)
T 2cy8_A 351 NWLAYG-------RFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE-GVDIGGR--------------G 408 (453)
T ss_dssp CEEEEC-------CTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT-TEECBTT--------------T
T ss_pred cEEEEE-------eeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC-CeEEeCC--------------C
Confidence 221111 26788898874 1 1 45788888887 9998532 2
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+|++ ...+++|+++++++|+++++++.+
T Consensus 409 ~~~l~--~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 409 SVFLS--AQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp EEECC--TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEee--ccCCHHHHHHHHHHHHHHHHHHHh
Confidence 35654 558999999999999999887643
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-24 Score=207.86 Aligned_cols=323 Identities=15% Similarity=0.075 Sum_probs=214.1
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|..+ .|..++.+.+++.+.+.+...+ + + ......++++.++++++ .. ++++|++||+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~---~-~-----~~~~~~~l~~~la~~~~-~~-~~v~~~~~Gs 119 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSF---G-A-----PTEIENKLAKLVIERVP-SI-EIVRMVNSGT 119 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCC---S-S-----CCHHHHHHHHHHHHHST-TC-SEEEEESSHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCc---C-C-----CCHHHHHHHHHHHHhCC-CC-CEEEEeCChH
Confidence 3445676553 2346899999999988763211 1 0 12445578889999986 33 4999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCC-------------------eEEEEeCCCCCCCCHHH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-------------------NLKFLNLNDDESPDLDK 200 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~-------------------~~~~v~~~~~~~~d~~~ 200 (458)
+|+..++..+. ...++++|++.+++|++....... ..|. .+..++.+ |+++
T Consensus 120 ea~~~ai~~a~--~~~~~~~vi~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~ 189 (429)
T 3k28_A 120 EATMSALRLAR--GYTGRNKILKFIGCYHGHGDSLLI---KAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLES 189 (429)
T ss_dssp HHHHHHHHHHH--HHHTCCEEEEEETCCCCSCGGGCS---SCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHH
T ss_pred HHHHHHHHHHH--HhhCCCEEEEECCCcCCCcHHHHH---hcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHH
Confidence 99999998762 123678999999999865422110 0111 23333332 8899
Q ss_pred HHHhhc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccCC---cc-cCCCCCCCCcEEEeccc
Q 012718 201 LKEMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVP---HM-VVDVQGLDADFLVASSH 269 (458)
Q Consensus 201 l~~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g---~~-~~~~~~~~~d~~~~s~~ 269 (458)
+++.++ +++++|+++.+++++|.+.+ +++|.++|++||+++|+|++|..- .. ..+.....+|+++ ++
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t--~s 267 (429)
T 3k28_A 190 VKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTC--LG 267 (429)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEE--EC
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCceeh--hh
Confidence 999886 46788999999999999998 999999999999999999999621 10 0111123467654 77
Q ss_pred CCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Q 012718 270 KMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY 348 (458)
Q Consensus 270 K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~ 348 (458)
|.+|+ ..+|++++++++++.+.+..... .....+.+....++..++++.. . ++..++
T Consensus 268 K~~~~G~~iG~~~~~~~~~~~~~~~~~~~------------------~~~t~~~~~~a~aaa~aal~~~---~-~~~~~~ 325 (429)
T 3k28_A 268 KVIGGGLPVGAYGGKAEIMRQVAPSGPIY------------------QAGTLSGNPLAMAAGYETLVQL---T-PESYVE 325 (429)
T ss_dssp GGGGTTSCCEEEEECHHHHTTBTTTSSBC------------------CCCTTTTCHHHHHHHHHHHHTC---C-HHHHHH
T ss_pred hhhcCCCCeEEEEEcHHHHhhhccCCCcc------------------ccCCCCCChHHHHHHHHHHHHH---H-HHHHHH
Confidence 96653 34999999998877765321000 0012244555555555555533 2 566777
Q ss_pred HHHHHHHHHHHHhcC----CCEEEeCCCCCCcCccccEEEEEeCCCC--------------hHHHHHHHhhhcCeEeccC
Q 012718 349 EMELAKYLYENLLSI----PNIRIYGPKPSEHVQRAALCSFNVENIH--------------PTDIATLLDQQYGVATRSG 410 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~~~~l~~~~gi~~~~g 410 (458)
++++.+++.+.|.++ +..... ...+.++++.+.... ..++.+.|.++ ||.++++
T Consensus 326 ~~~~~~~l~~~L~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~ 397 (429)
T 3k28_A 326 FERKAEMLEAGLRKAAEKHGIPHHI-------NRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPS 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEE-------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSS
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEE-------EeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecC
Confidence 777777777777653 222111 122667778764211 25788888888 9999876
Q ss_pred CCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 411 HHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 411 ~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
. .+.+|+++ ..+++|+++++++|++++++++
T Consensus 398 ~------------~~~~r~~~--~~t~e~i~~~l~~l~~~l~~~~ 428 (429)
T 3k28_A 398 Q------------FEGLFLST--VHSDADIEATIAAAEIAMSKLK 428 (429)
T ss_dssp T------------TSCBCCCT--TCCHHHHHHHHHHHHHHHHTCC
T ss_pred C------------CCCEEEEC--CCCHHHHHHHHHHHHHHHHHHh
Confidence 4 45678865 4799999999999999998764
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=202.13 Aligned_cols=334 Identities=14% Similarity=0.151 Sum_probs=214.5
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHh-ccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCCh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~ 138 (458)
++..|+|..+ .|..++.+.+++.+.+... ..+.. ........+..+.+.+.|+++++...+ .|+|++||
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~la~~l~~~~~~~~~-~v~f~~sG 136 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRP---ALGILPPENFVEKLRESLLSVAPKGMS-QLITMACG 136 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCC---CTTTSCBTTHHHHHHHTGGGGCCTTCC-EEEEESSH
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccc---ccccccHHHHHHHHHHHHHHhCCCCcC-EEEEeCCc
Confidence 3445777532 3556888999998865332 11110 000011123333444445556544443 89999999
Q ss_pred hHHHHHHHHHcCCC------C---C------------CCC---CEEEEcCCCCccchHHHHHHH-----HHcCCeE---E
Q 012718 139 TEAINLVAYSWGLS------N---L------------KSG---DEVILTVAEHHSAIVPWQLVA-----QKTGANL---K 186 (458)
Q Consensus 139 t~a~~~~~~~l~~~------~---~------------~~g---~~vl~~~~~~~s~~~~~~~~a-----~~~g~~~---~ 186 (458)
++|+..++..+... . . ++| ++|++.++.||+.......+. +..|... .
T Consensus 137 seA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~ 216 (472)
T 1ohv_A 137 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWP 216 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCC
T ss_pred hhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCc
Confidence 99999999876210 0 0 134 899999999998776544331 1112211 1
Q ss_pred EEeCCCC-C-------------CCCHHHHHHhhcC------CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEE
Q 012718 187 FLNLNDD-E-------------SPDLDKLKEMLSR------KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVL 242 (458)
Q Consensus 187 ~v~~~~~-~-------------~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vi 242 (458)
.+++... . ..|+++|++.+++ ++++|+++.++|++|.+.| +++|.++|++||+++|
T Consensus 217 ~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli 296 (472)
T 1ohv_A 217 IAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFL 296 (472)
T ss_dssp EECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEE
T ss_pred ccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 2232210 0 1267889988876 7899999999999999887 9999999999999999
Q ss_pred Eecccc-CCccc--CCCCCCC----CcEEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCC
Q 012718 243 VDACQS-VPHMV--VDVQGLD----ADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPP 314 (458)
Q Consensus 243 vD~a~~-~g~~~--~~~~~~~----~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 314 (458)
+|++|. +|... +....++ +|++ +++|. +| | |+++ ++++ ..+.+...
T Consensus 297 ~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~--G-G~~~-~~~~-~~~~~~~~------------------- 350 (472)
T 1ohv_A 297 VDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT--G-GFFH-KEEF-RPNAPYRI------------------- 350 (472)
T ss_dssp EECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS--E-EEEE-CGGG-SCSSSSSS-------------------
T ss_pred EeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc--C-CccC-chhh-cccccccc-------------------
Confidence 999998 44331 2333333 7776 56797 44 2 6665 5543 22221111
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CC-EEEeCCCCCCcCccccEEEEEeCC
Q 012718 315 SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI----PN-IRIYGPKPSEHVQRAALCSFNVEN 389 (458)
Q Consensus 315 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~----~~-~~~~~~~~~~~~~~~~~v~~~~~~ 389 (458)
+...+.+...++++.++++.+.+. .+.++++++.++|.+.|+++ ++ +.... ..+.++++.+++
T Consensus 351 --~~T~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~-------~~g~~~~~~~~~ 418 (472)
T 1ohv_A 351 --FNTWLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFISRVR-------GRGTFCSFDTPD 418 (472)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE-------EETTEEEEECSS
T ss_pred --cCccCccHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEeec-------CCceEEEEEeCC
Confidence 112235666777777888887663 35677777788887777654 32 32111 126688887753
Q ss_pred -CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 390 -IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 390 -~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
....++.+.|.++ ||.+.++. .+.||+++++.++++||++++++|+++++++
T Consensus 419 ~~~~~~~~~~l~~~-Gv~~~~~g------------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 419 ESIRNKLISIARNK-GVMLGGCG------------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHHHHHHHHHHT-TEECEEET------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHC-CeEEecCC------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 1346788888887 99987642 5689999999999999999999999998764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-24 Score=206.23 Aligned_cols=332 Identities=14% Similarity=0.021 Sum_probs=213.7
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc-CCCCC-C--cEEEeCChhHHHHHH
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI-NASDS-G--EIVFTKNATEAINLV 145 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~~~-~--~v~~t~g~t~a~~~~ 145 (458)
|.|..+..+.++.|.+|.....+.... + +|....+..++|+++++++ |.... . ..+.|.|+|.|+..+
T Consensus 54 y~d~~g~~~vl~~Vk~A~~~~~~~~~~--~------~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a 125 (420)
T 4h51_A 54 YRDEQGRPYPLRVVRKAEQLLLDMNLD--Y------EYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLG 125 (420)
T ss_dssp CBCTTSCBCCCHHHHHHHHHHHHTTCC--C------CCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCC--C------CCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHH
Confidence 444445557778898888776654211 1 0112344557888888875 32211 1 235588999999988
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCe-EEEEeCC--CCCCCCHHHHHHhhc---CCceEEEEecccC
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGAN-LKFLNLN--DDESPDLDKLKEMLS---RKTKLVVIHHISN 219 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~-~~~v~~~--~~~~~d~~~l~~~l~---~~~~~v~~~~~~n 219 (458)
+..+.....++||+|++++|+|+. +..+.+..|.+ +...+.. .+..+|.+.+.+.+. +++++++++.++|
T Consensus 126 ~~~l~~~~~~pgd~V~ip~P~w~~----y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~N 201 (420)
T 4h51_A 126 AKLLTRVFDAETTPIYLSDPTWPN----HYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHN 201 (420)
T ss_dssp HHHHTTTSCTTTSCEEEEESCCTH----HHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCT
T ss_pred HHHHHHhcCCCCCEEEEecCCchh----HHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCC
Confidence 887754456899999999999994 45556667886 4444433 235568887777653 5678889999999
Q ss_pred cCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCC-------CCCCCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 220 MLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVD-------VQGLDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 220 ~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~-------~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
|||..++ +++|+++|+++++++++|++|..-.. ..+ .+.....+++.|+||.|+.+| +|++++..
T Consensus 202 PtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~ 281 (420)
T 4h51_A 202 PTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLL 281 (420)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecc
Confidence 9999999 77899999999999999999863211 000 112235678889999999888 99999987
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH------HHHHhCHHHHHHHHHHHHHHHHH
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID------YLSTIGMQKIHAYEMELAKYLYE 358 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~~~~~~~~~~l~~~l~~ 358 (458)
+..+........-.. ..+...+.++..+.......+. .+.. .++.++++++++++.|.+
T Consensus 282 ~~~~~~~~~~~~l~~--------------~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~-~~~~m~~r~~~~R~~l~~ 346 (420)
T 4h51_A 282 KDKTKRADVKSVMDS--------------LIREEYTCPPAHGARLAHLILSNNELRKEWEA-ELSAMAERIRTMRRTVYD 346 (420)
T ss_dssp SCHHHHHHHHHHHHH--------------HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH--------------hhhcccCcchHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 655433211110000 0011233455555554444443 1111 267788899999999999
Q ss_pred HHhcCC--C-EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCC
Q 012718 359 NLLSIP--N-IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435 (458)
Q Consensus 359 ~L~~~~--~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~ 435 (458)
.|++.. + +....+. .|.|.+. +.+.+ .++.|++. ||++.++ -|||+.. .
T Consensus 347 ~L~~~g~~~~~~~i~~q------~GmF~~~---gls~e-~v~~L~e~-~Vy~~~~----------------gRis~Ag-l 398 (420)
T 4h51_A 347 ELLRLQTPGSWEHVINQ------IGMFSFL---GLSKA-QCEYCQNH-NIFITVS----------------GRANMAG-L 398 (420)
T ss_dssp HHHHTTCSSCCTHHHHC------CSSEEEC---CCCHH-HHHHHHHT-TEECCTT----------------CEEEGGG-C
T ss_pred HHHHhCCCCCCCeecCC------CceEEec---CcCHH-HHHHHHhC-CEEEcCC----------------CEEEecc-C
Confidence 998761 1 2111122 2434433 44444 45778766 9988643 1999875 6
Q ss_pred CHHHHHHHHHHHHHHHHhhhc
Q 012718 436 TKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~~~~~ 456 (458)
+++.|++++++|.++++++.+
T Consensus 399 ~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 399 THETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999998765
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=203.95 Aligned_cols=257 Identities=17% Similarity=0.149 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHcCCCCCCcEEE--eCChhHHHHHHHHHcCCCCCCCCCEEEEcC-CCCccchHHH-------HHHHHHcC
Q 012718 113 YELARKKVAAFINASDSGEIVF--TKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPW-------QLVAQKTG 182 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~--t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~-~~~~s~~~~~-------~~~a~~~g 182 (458)
.+.+++.+|+++|++. .+++ ++||++|+..++.++ +++||+|++++ +.|.+....+ ...++..|
T Consensus 75 ~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~al----l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G 148 (427)
T 3i16_A 75 RDSLDAVYARVFNTES--ALVRPHFVNGTHALGAALFGN----LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFG 148 (427)
T ss_dssp HHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHH----CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGT
T ss_pred HHHHHHHHHHHhCCcc--eEEeCCCccHHHHHHHHHHHH----hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcC
Confidence 6678899999999873 4454 899999999999988 78999999999 8898664332 03345569
Q ss_pred CeEEEEeCCCCCCCCHHHHHHhhc--CCceEEEEec----ccCcCcccccHHHHHHHHHh--cCcEEEEeccccCCcccC
Q 012718 183 ANLKFLNLNDDESPDLDKLKEMLS--RKTKLVVIHH----ISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVV 254 (458)
Q Consensus 183 ~~~~~v~~~~~~~~d~~~l~~~l~--~~~~~v~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~ 254 (458)
++++.++.+++|.+|+++++++++ +++++|++++ ++||+|.+.|+++|+++|++ +|+++++|++|+.+....
T Consensus 149 ~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~ 228 (427)
T 3i16_A 149 INYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTK 228 (427)
T ss_dssp CEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSS
T ss_pred CEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccC
Confidence 999999998889899999999998 7899999999 99999999999999999999 999999999999776323
Q ss_pred CCCCCCCcEEEecccCCCCCCc---eeEEEEeccccccCCCcc--ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHH
Q 012718 255 DVQGLDADFLVASSHKMCGPTG---IGFLFGKSDLLSAMPPFL--GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIG 329 (458)
Q Consensus 255 ~~~~~~~d~~~~s~~K~~gp~g---~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 329 (458)
.....++|++++|+||.+|++| .|+++.++++++.+.... .+.+. .. .+... +
T Consensus 229 ~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~------------------~~-~~~~~---~ 286 (427)
T 3i16_A 229 EPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGG------------------EC-GSTFG---V 286 (427)
T ss_dssp CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGG------------------GC-CCCTT---C
T ss_pred CccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCc------------------cC-CccHH---H
Confidence 3334678999999999887643 699999998887765421 11110 01 11111 1
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhh
Q 012718 330 LGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQ 402 (458)
Q Consensus 330 l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~ 402 (458)
...+++-+.. +....++..+++.++.+.|+++ ++++... +. +.++.-++.|.+.+. ....+++.|...
T Consensus 287 a~~~l~gl~~--~~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~-~~~~~~i~~i~l~~~~~~~~f~~~l~~~ 355 (427)
T 3i16_A 287 VRSMYQGLFL--APHISMEALKGAILCSRIMELA-GFEVMPK-YD-EKRSDIIQSIKFNDKDKLIEFCKGIQTG 355 (427)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TT-SCCSSSCEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhC-CCeecCC-CC-CCCccEEEEEEECCHHHHHHHHHHHhhc
Confidence 1222333333 3456677788889999999988 6677433 21 122333888888631 234566666654
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=198.60 Aligned_cols=324 Identities=15% Similarity=0.127 Sum_probs=209.6
Q ss_pred CCeEEecCCCC------CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAAT------SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++..|+|..+. |..++.+.+++.+.+.+...+ + + ..+...++.+.++++++ .. ++++|++||+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~---~-~-----~~~~~~~la~~l~~~~~-~~-~~v~~~~sGs 119 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF---G-A-----PTEMEVKMAQLVTDLVP-TM-DMVRMVNSGT 119 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC---S-S-----CCHHHHHHHHHHHHHST-TC-SEEEEESSHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc---C-C-----CCHHHHHHHHHHHhhCC-CC-CEEEEeCcHH
Confidence 34456765432 235899999999987653211 1 0 12455678899999987 33 4999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCC-----------------eEEEEeCCCCCCCCHHHHH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA-----------------NLKFLNLNDDESPDLDKLK 202 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~-----------------~~~~v~~~~~~~~d~~~l~ 202 (458)
+|++.++.... ...++++|++.++.||+.......... .+. .+..++.. |+++|+
T Consensus 120 ea~~~al~~a~--~~~~~~~ii~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le 191 (429)
T 4e77_A 120 EATMSAIRLAR--GYTGRDKIIKFEGCYHGHADCLLVKAG-SGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVR 191 (429)
T ss_dssp HHHHHHHHHHH--HHHCCCEEEEETTCCCC-------------------CCCTTSCGGGGTTEEEECTT-----CHHHHH
T ss_pred HHHHHHHHHHH--HhhCCCEEEEEcCccCCCChhhhhhcC-CcccccCCCCcCCCCCccCCceeecCCC-----CHHHHH
Confidence 99999998542 123567899999999976542211100 011 12222221 889999
Q ss_pred Hhhc---CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc---CCcc-cCCCCCCCCcEEEecccCC
Q 012718 203 EMLS---RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS---VPHM-VVDVQGLDADFLVASSHKM 271 (458)
Q Consensus 203 ~~l~---~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~---~g~~-~~~~~~~~~d~~~~s~~K~ 271 (458)
+.++ +++++|+++.+++++|.+.+ +++|.++|++||+++|+|++|+ .|.. ..+.....+|++ |++|.
T Consensus 192 ~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~ 269 (429)
T 4e77_A 192 QAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKI 269 (429)
T ss_dssp HHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGG
T ss_pred HHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCee--eeccc
Confidence 9886 36788888888888888888 9999999999999999999998 2221 011122346765 67796
Q ss_pred CCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 012718 272 CGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEM 350 (458)
Q Consensus 272 ~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~ 350 (458)
+|+ ..+|++++++++++.+.+.... ......+.+....+++.++++.+.+ +.+.++++
T Consensus 270 ~~~G~~~G~~~~~~~~~~~l~~~~~~------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~ 328 (429)
T 4e77_A 270 IGGGMPVGAFGGRREVMNALAPTGPV------------------YQAGTLSGNPIAMAAGFACLTEISQ---VGVYETLT 328 (429)
T ss_dssp GGTTSCCEEEEECHHHHTTBTTTSSB------------------CC--CCCCCHHHHHHHHHHHHHHTS---TTHHHHHH
T ss_pred ccCCCCeEEEEECHHHHHHhccCCCc------------------cccCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHH
Confidence 653 3489999999887776542100 0011235677777777778877643 34455555
Q ss_pred HHHHHHHHHHhc----CCCEEEeCCCCCCcCccccEEEEEeCCCC---------------hHHHHHHHhhhcCeEeccCC
Q 012718 351 ELAKYLYENLLS----IPNIRIYGPKPSEHVQRAALCSFNVENIH---------------PTDIATLLDQQYGVATRSGH 411 (458)
Q Consensus 351 ~l~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~~~l~~~~gi~~~~g~ 411 (458)
++.+++.+.|.+ .+..... ...+.++++.+++.. ..++.+.|.++ ||.++++.
T Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~ 400 (429)
T 4e77_A 329 ELTDSLATGLRHAAKEENIPLVV-------NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSA 400 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEE-------EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSST
T ss_pred HHHHHHHHHHHHHHHhCCCceEE-------EEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecC
Confidence 555555555543 3211111 123668888886531 16788889888 99998764
Q ss_pred CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 412 ~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
...+|++ ...+++|+++++++|++++++
T Consensus 401 ------------~~~~~~~--~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 401 ------------FEAGFMS--LAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp ------------TSCEECC--TTCCHHHHHHHHHHHHHHHTT
T ss_pred ------------CCCEEEe--ccCCHHHHHHHHHHHHHHHHh
Confidence 2345554 558999999999999998864
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=204.08 Aligned_cols=312 Identities=15% Similarity=0.113 Sum_probs=208.7
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
+..++.+.+++.+.+.... +.+ ...+..+++.+.++++++ .. ++|++++|+++|+..++...+ .+.+
T Consensus 67 G~~~p~v~~a~~~~~~~~~---~~~------~~~~~~~~l~~~l~~~~~-~~-~~v~~~~~g~ea~~~al~~ar--~~~~ 133 (424)
T 2e7u_A 67 GHAHPKVLARVRETLERGL---TFG------APSPLEVALAKKVKRAYP-FV-DLVRFVNSGTEATMSALRLAR--GYTG 133 (424)
T ss_dssp CBTCHHHHHHHHHHHHTCS---CCS------SCCHHHHHHHHHHHHHCT-TC-CEEEEESSHHHHHHHHHHHHH--HHHC
T ss_pred CCCCHHHHHHHHHHHHhCC---CCC------CCCHHHHHHHHHHHHhCC-CC-CEEEEeCCHHHHHHHHHHHHH--HhhC
Confidence 4578999999999887521 111 123455678899999986 33 399999999999999988511 0235
Q ss_pred CCEEEEcCCCCccchHHHHHHH----------HHcC------CeEEEEeCCCCCCCCHHHHHHhhc---CCceEEEEecc
Q 012718 157 GDEVILTVAEHHSAIVPWQLVA----------QKTG------ANLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHI 217 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a----------~~~g------~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~ 217 (458)
+++|++.+++|++........+ ...| .++..++.. |++++++.++ +++++|+++..
T Consensus 134 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~ 208 (424)
T 2e7u_A 134 RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN-----DPEGLREVLKRRGEEIAAIIFEPV 208 (424)
T ss_dssp CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSS
T ss_pred CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCC-----CHHHHHHHHHhCCCCEEEEEEeCC
Confidence 6789999999987532211100 0012 234555542 8999999886 46778888777
Q ss_pred cCcCccccc----HHHHHHHHHhcCcEEEEeccccCCcc--c---CCCCCCCCcEEEecccCCCCC-CceeEEEEecccc
Q 012718 218 SNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHM--V---VDVQGLDADFLVASSHKMCGP-TGIGFLFGKSDLL 287 (458)
Q Consensus 218 ~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~--~---~~~~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~ 287 (458)
++++|.+.| +++|.++ ++||+++|+|++|+ |.. . .+.....+|++ |++|.+|+ -.+|+++++++++
T Consensus 209 ~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~~~~ 284 (424)
T 2e7u_A 209 VGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFRLAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRREIM 284 (424)
T ss_dssp BCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTTSSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccccchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcHHHH
Confidence 777999887 9999999 99999999999998 221 0 01112346765 78897764 2389999999887
Q ss_pred ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---C
Q 012718 288 SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI---P 364 (458)
Q Consensus 288 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~---~ 364 (458)
+.+.+... . ......+.+....++..++++.+.+ .+.+.++++++.+++.+.|+++ .
T Consensus 285 ~~~~~~~~--~----------------~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~ 344 (424)
T 2e7u_A 285 EKVAPLGP--V----------------YQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEK 344 (424)
T ss_dssp TTBTTTSS--B----------------CCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcccCC--c----------------ccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76654110 0 0011224566667777778887755 2567788888888888887654 1
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCCC--------------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVENI--------------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS 430 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis 430 (458)
++....+ ..+.++++.++.. ...++.+.|.++ ||.+.++. ...+|++
T Consensus 345 ~~~~~~~------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------------~~~~~~~ 405 (424)
T 2e7u_A 345 GLPHTVN------RVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDR-GIYWPPSN------------FEAAFLS 405 (424)
T ss_dssp TCCCEEE------EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTT-TEECCSSS------------SSCEECC
T ss_pred CCceEEE------eeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHC-CeEEeccC------------CCceEee
Confidence 2211001 2266888888641 134688888887 99998764 2245655
Q ss_pred eCCCCCHHHHHHHHHHHHHHH
Q 012718 431 LHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 431 ~~~~~t~~di~~l~~~l~~~~ 451 (458)
...+++|+++++++|++++
T Consensus 406 --~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 406 --VAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp --TTCCHHHHHHHHHHHHHHC
T ss_pred --ccCCHHHHHHHHHHHHHhC
Confidence 5589999999999998763
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-23 Score=200.62 Aligned_cols=313 Identities=19% Similarity=0.156 Sum_probs=207.2
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG 157 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g 157 (458)
..++.+.+++.+.+.....+ + + ..+...++.+.++++++ .. ++|+|++|+++|+..++.... ...++
T Consensus 68 ~~~p~v~~a~~~~~~~~~~~---~-----~-~~~~~~~la~~l~~~~~-~~-~~v~~~~ggsea~~~al~~a~--~~~~~ 134 (427)
T 3fq8_A 68 HAHPEVIEALKVAMEKGTSF---G-----A-PCALENVLAEMVNDAVP-SI-EMVRFVNSGTEACMAVLRIMR--AYTGR 134 (427)
T ss_dssp BTCHHHHHHHHHHHTTCSCC---S-----S-CCHHHHHHHHHHHHHST-TC-SEEEEESSHHHHHHHHHHHHH--HHHCC
T ss_pred CCCHHHHHHHHHHHHhCCCc---C-----C-CCHHHHHHHHHHHHhCC-CC-CEEEEeCCHHHHHHHHHHHHH--HhhCC
Confidence 35899999999887653111 1 1 24556678899999987 43 499999999999999995431 12345
Q ss_pred CEEEEcCCCCccchHHHHHH----HHHc------------CCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEeccc
Q 012718 158 DEVILTVAEHHSAIVPWQLV----AQKT------------GANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHIS 218 (458)
Q Consensus 158 ~~vl~~~~~~~s~~~~~~~~----a~~~------------g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~ 218 (458)
++|++.+++|++........ .... +..+..++.+ |++++++.+++ ++++|+++.++
T Consensus 135 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~ 209 (427)
T 3fq8_A 135 DKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIV 209 (427)
T ss_dssp CEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSB
T ss_pred CEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCc
Confidence 78999999998643211100 0000 1124444443 89999999875 67999999999
Q ss_pred CcCccccc----HHHHHHHHHhcCcEEEEecccc---CCcc-cCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccc
Q 012718 219 NMLASILP----IEEIVHWSHDVGAKVLVDACQS---VPHM-VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLS 288 (458)
Q Consensus 219 n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~---~g~~-~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~ 288 (458)
+++|.+.+ +++|.++|++||+++|+|++|+ .|.. ..+.....+|++ |++|.+++ | +|++++++++++
T Consensus 210 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~~-G~~~G~~~~~~~~~~ 286 (427)
T 3fq8_A 210 GNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLT--TLGKIIGG-GLPVGAYGGKREIMQ 286 (427)
T ss_dssp CTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEE--EECGGGGT-TSSCEEEEECHHHHT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChh--hhhhhhhC-CcceEEEEEcHHHHH
Confidence 99999999 9999999999999999999998 1111 111223346765 56697763 5 999999998877
Q ss_pred cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC---C
Q 012718 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP---N 365 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~---~ 365 (458)
.+.+..... .....+.+....++..++++.+.+ +.+.++++++.+++.+.|.++. +
T Consensus 287 ~~~~~~~~~------------------~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (427)
T 3fq8_A 287 LVAPAGPMY------------------QAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQETG 345 (427)
T ss_dssp TBTTTSSBC------------------CCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccCCCcc------------------ccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 766421000 001123466677777777776644 3445555566666655554320 1
Q ss_pred EEEeCCCCCCcCccccEEEEEeCCC--C------------hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEee
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVENI--H------------PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL 431 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~~--~------------~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~ 431 (458)
+... . ...+.++++.+... . ..++.+.|.++ ||.++++. .. |+++
T Consensus 346 ~~~~--~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~------------~~--r~~~ 404 (427)
T 3fq8_A 346 HAAC--G----GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQ------------FE--AGFT 404 (427)
T ss_dssp CCCE--E----EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST------------TS--CEEC
T ss_pred CCeE--E----EEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCC------------CC--CEEe
Confidence 1100 0 12366888887532 1 24788888888 99998764 12 5555
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 012718 432 HFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 432 ~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+...+++|+++++++|++++++
T Consensus 405 ~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 405 SLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCcCCHHHHHHHHHHHHHHHHh
Confidence 6668999999999999999875
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=197.02 Aligned_cols=255 Identities=17% Similarity=0.150 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHcCCCCCCcEEE--eCChhHHHHHHHHHcCCCCCCCCCEEEEcC-CCCccchHHH-------HHHHHHcC
Q 012718 113 YELARKKVAAFINASDSGEIVF--TKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPW-------QLVAQKTG 182 (458)
Q Consensus 113 ~~~~~~~la~~~g~~~~~~v~~--t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~-~~~~s~~~~~-------~~~a~~~g 182 (458)
.+.+++.+|+++|.+. .+++ ++||++|+..++.++ +++||+|++++ +.|.+....+ ...++..|
T Consensus 76 ~~~Le~~lA~l~g~e~--alv~p~~~sGt~A~~~al~al----l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G 149 (427)
T 3hvy_A 76 RDSLDRVYANIFNTES--AFVRPHFVNGTHAIGAALFGN----LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYG 149 (427)
T ss_dssp HHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHT----CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGT
T ss_pred HHHHHHHHHHHhCCCc--eEEeCCCCcHHHHHHHHHHHh----cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcC
Confidence 6778899999999873 3443 889999999999988 79999999999 8898664222 02345569
Q ss_pred CeEEEEeCCCCCCCCHHHHHHhhc--CCceEEEEec----ccCcCcccccHHHHHHHHHh--cCcEEEEeccccCCcccC
Q 012718 183 ANLKFLNLNDDESPDLDKLKEMLS--RKTKLVVIHH----ISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVV 254 (458)
Q Consensus 183 ~~~~~v~~~~~~~~d~~~l~~~l~--~~~~~v~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~ 254 (458)
++++.++. +++.+|+++++++++ +++++|++++ ++||||.+.|+++|+++|++ +|+++++|++|+.+....
T Consensus 150 ~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~ 228 (427)
T 3hvy_A 150 VKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEK 228 (427)
T ss_dssp CEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSS
T ss_pred CEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCC
Confidence 99999998 678899999999998 7899999999 99999999999999999999 899999999999776323
Q ss_pred CCCCCCCcEEEecccCCCCCCc---eeEEEEeccccccCCCcc--ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHH
Q 012718 255 DVQGLDADFLVASSHKMCGPTG---IGFLFGKSDLLSAMPPFL--GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIG 329 (458)
Q Consensus 255 ~~~~~~~d~~~~s~~K~~gp~g---~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 329 (458)
.....++|++++|+||.+|++| .|+++.++++++.+.... .+.+ ...+ ++.....
T Consensus 229 ~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g------------------~~~~-~~~~~a~- 288 (427)
T 3hvy_A 229 EPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIG------------------GECG-STFGVMR- 288 (427)
T ss_dssp CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTG------------------GGCC-CCTTCHH-
T ss_pred CCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcc------------------cccC-CCHHHHH-
Confidence 3334578999999999877643 599999988877765321 1111 1111 1111112
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhh
Q 012718 330 LGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQ 401 (458)
Q Consensus 330 l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~ 401 (458)
.+++-+.. .+...++..+++.++.+.|+++ ++++... +. +.++..+++|.+.+. ...++++.|..
T Consensus 289 --~~~~gl~~--~~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~-~~~~~li~~~~l~~~~~~~~f~~~l~~ 354 (427)
T 3hvy_A 289 --SLYEGLFM--APHVTIEAVKGAVFCARIMELA-GFDVLPK-YN-DKRTDIIQAIKFNDEKKLIDFIKGIQT 354 (427)
T ss_dssp --HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TT-SCCSSSEEEEECSSHHHHHHHHHHHHH
T ss_pred --HHHHhHhH--HHHHHHHHHHHHHHHHHHHHhC-CCeecCC-CC-CCCceEEEEEeCCCHHHHHHHHHHhcc
Confidence 22232322 3456677788899999999988 6677433 21 122333888888631 12345555554
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-21 Score=195.51 Aligned_cols=296 Identities=11% Similarity=0.087 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~ 191 (458)
.+.++++.+|+++|++. .+++++|++.|+..++.++ +++||+|+++.++|.|...+ +...|++++.++.+
T Consensus 196 ~i~eaE~~lA~~fGa~~--a~~v~nGts~An~~ai~al----~~pGD~VLv~r~~H~S~~~~----l~lsGa~pv~v~~~ 265 (715)
T 3n75_A 196 PHKEAEQYIARVFNADR--SYMVTNGTSTANKIVGMYS----APAGSTILIDRNCHKSLTHL----MMMSDVTPIYFRPT 265 (715)
T ss_dssp HHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHH----CCTTCEEEEESSCCHHHHHH----HHHSCCEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCC--ceEECcHHHHHHHHHHHHh----CCCCCEEEECCCccHHHHHH----HHHcCCEEEEEecc
Confidence 46689999999999973 5566677789999999988 79999999999999987543 45679999999875
Q ss_pred CC-C----CC-----CHHHHHHhhcC--Cce---EEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc--cC
Q 012718 192 DD-E----SP-----DLDKLKEMLSR--KTK---LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM--VV 254 (458)
Q Consensus 192 ~~-~----~~-----d~~~l~~~l~~--~~~---~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~--~~ 254 (458)
.+ + .+ |++.+++++.+ +++ +++++++ |++|.+.|+++|.++|++++ +++|++|+.+.. +.
T Consensus 266 ~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~ 342 (715)
T 3n75_A 266 RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (715)
T ss_dssp BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGG
T ss_pred ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCc
Confidence 33 2 23 89999999974 334 8888888 99999999999999998774 799999986531 11
Q ss_pred --CCCC--C--CCcEE---EecccCC-CCCCceeEEEEeccccc-cCCCccccCcceEeeecCCCCCCCCCCccCCCCCC
Q 012718 255 --DVQG--L--DADFL---VASSHKM-CGPTGIGFLFGKSDLLS-AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPA 323 (458)
Q Consensus 255 --~~~~--~--~~d~~---~~s~~K~-~gp~g~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~ 323 (458)
+... . ++|++ +.|+||. .|+.+.|+++++++... .+.... ..+.+++++
T Consensus 343 ~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~--------------------~~~~STSps 402 (715)
T 3n75_A 343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAY--------------------MMHTTTSPH 402 (715)
T ss_dssp GTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHH--------------------HHTSCSSCC
T ss_pred cccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHH--------------------HhhcCCCch
Confidence 1111 1 25765 8999995 55778999999876311 111100 124467899
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC------EEEeCCCCCCc-------------------C-
Q 012718 324 IGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN------IRIYGPKPSEH-------------------V- 377 (458)
Q Consensus 324 ~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~------~~~~~~~~~~~-------------------~- 377 (458)
+..++++.++++++....-.++.++..++++++++.|+++++ +++..+..... .
T Consensus 403 y~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~ 482 (715)
T 3n75_A 403 YGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNE 482 (715)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSS
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccC
Confidence 999999999999886422355778888999999998877643 45554331000 0
Q ss_pred --cccc-EEEEEeC-----------CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHH
Q 012718 378 --QRAA-LCSFNVE-----------NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEF 443 (458)
Q Consensus 378 --~~~~-~v~~~~~-----------~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l 443 (458)
..-+ =+++..+ +++..++.+.|+++ ||.+.-.. ...+=+-+++..+.+++++|
T Consensus 483 ~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~-~I~~E~~d------------~~~vl~l~s~g~~~~~~~~L 549 (715)
T 3n75_A 483 HMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEH-GIVVEKTG------------PYNLLFLFSIGIDKTKALSL 549 (715)
T ss_dssp SEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHT-TCCCSEEE------------TTEEEEECCTTCCHHHHHHH
T ss_pred cccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHC-CCEEEecC------------CCcEEEEeCCCCCHHHHHHH
Confidence 0011 2344444 34567888999876 99874222 45666666766899999999
Q ss_pred HHHHHHHHHh
Q 012718 444 IHALNETVSF 453 (458)
Q Consensus 444 ~~~l~~~~~~ 453 (458)
+++|.++-+.
T Consensus 550 ~~aL~~~~~~ 559 (715)
T 3n75_A 550 LRALTDFKRA 559 (715)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=192.36 Aligned_cols=260 Identities=15% Similarity=0.155 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHcCCCCCC-cEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcC-CCCccchHHHH------HHHHHcCC
Q 012718 112 EYELARKKVAAFINASDSG-EIVFTKNATEAINLVAYSWGLSNLKSGDEVILTV-AEHHSAIVPWQ------LVAQKTGA 183 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~-~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~-~~~~s~~~~~~------~~a~~~g~ 183 (458)
..+++++.+++++|.+... ++++ +|||+|+..++.++ +++||+|+++. +.|.+....+. ..++..|+
T Consensus 66 ~~~~l~~~la~~~g~~~~~~~i~~-~sGt~Ai~~al~al----~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~ 140 (431)
T 3ht4_A 66 GRDTLEKVYADVFGAEAGLVRPQI-ISGTHAISTALFGI----LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI 140 (431)
T ss_dssp HHHHHHHHHHHHTTCSEECCBTTS-CSHHHHHHHHHHTT----CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC
T ss_pred hHHHHHHHHHHHhCCCccccccee-eCHHHHHHHHHHHh----CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC
Confidence 3677899999999987431 1224 47899999999887 78999999998 88886532221 22345699
Q ss_pred eEEEEeCCCCCCCCHHHHHHhhcCCceEEEEec-ccCcCcc---cccHHHHHHHHHh--cCcEEEEeccccCCcccCCCC
Q 012718 184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHH-ISNMLAS---ILPIEEIVHWSHD--VGAKVLVDACQSVPHMVVDVQ 257 (458)
Q Consensus 184 ~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~-~~n~tG~---~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~~~~ 257 (458)
+++.++.++++.+|++++++++++++++|++++ ++||+|. ..++++|+++|++ +|+++++|++|+.+....+..
T Consensus 141 ~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~ 220 (431)
T 3ht4_A 141 GYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC 220 (431)
T ss_dssp EEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG
T ss_pred EEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc
Confidence 999999988899999999999999999999996 5555555 4458899999999 999999999999876433444
Q ss_pred CCCCcEEEecccCCCC----CCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHH
Q 012718 258 GLDADFLVASSHKMCG----PTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA 333 (458)
Q Consensus 258 ~~~~d~~~~s~~K~~g----p~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 333 (458)
..++|++++|++|.+| +.| |++++++++++.+.......+. ....+. +......+...
T Consensus 221 ~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~~----------------g~~~~~-~~~~~~~~~~~ 282 (431)
T 3ht4_A 221 HVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPGI----------------GAEAGA-SLYSLQEMYQG 282 (431)
T ss_dssp GTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTTT----------------TTSCSC-CCSCSHHHHHH
T ss_pred ccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCCc----------------ccccCc-cHHHHHHHHhH
Confidence 5578999999999643 455 9999998887766532211000 011111 11101112223
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhh
Q 012718 334 IDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQ 402 (458)
Q Consensus 334 l~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~ 402 (458)
++. ++...++..++++++.+.|+++ ++++.... . ...+.-++.+.+.+. ...++++.|.+.
T Consensus 283 l~~-----~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~~-~-~~~~~li~~i~l~~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 283 FFL-----APHVAGQALKGAIFTAAFLEKL-GMNTSPAW-N-APRTDLIQSVQFDDKDRMIAFCQAIQYA 344 (431)
T ss_dssp HHH-----HHHHHHHHHHHHHHHHHHHHHH-TCCEESCT-T-SCCSSSCCEEECCCHHHHHHHHHHHHHT
T ss_pred hhh-----HHHHHHHHHHHHHHHHHHHHhC-cCEecCCC-C-CCCccEEEEEEeCCHHHHHHHHHHHHhc
Confidence 332 2455667778888888888887 66663322 1 123333778888631 234666777654
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=181.58 Aligned_cols=315 Identities=15% Similarity=0.128 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh-HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeE
Q 012718 107 AKATDEYELARKKVAAFINASDSGEIVFTKNAT-EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185 (458)
Q Consensus 107 ~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t-~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~ 185 (458)
+......+.+...+.+++|.+.....++++|+| .++.+++.+.+ ....+++.|+++...|.|+ .+.+...|+.+
T Consensus 94 ~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar-~~~~~~~~viv~r~aHkSv----~kAl~l~Gl~p 168 (450)
T 3bc8_A 94 SLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR-HKRPKAKYIIWPRIDQKSC----FKSMVTAGFEP 168 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHH-HHCTTCCEEEEECCCCHHH----HHHHHHTTCEE
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcc-hhhcCCCEEEEECCcHHHH----HHHHHHcCCee
Confidence 345567777889999999998765678898888 44444444432 1122378999999999876 44455679999
Q ss_pred EEEeC---CCCCCCCHHHHHHhhcC----CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccC-CC-
Q 012718 186 KFLNL---NDDESPDLDKLKEMLSR----KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVV-DV- 256 (458)
Q Consensus 186 ~~v~~---~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~-~~- 256 (458)
+.++. ++.+.+|++.|+++|++ .+.+|+.+..++.+|.+.|+++|+++||+||+++|||+||+.-.... ++
T Consensus 169 ~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~ 248 (450)
T 3bc8_A 169 VVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLI 248 (450)
T ss_dssp EEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHH
T ss_pred EEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHH
Confidence 88876 44578999999999965 33455555555556789999999999999999999999999543211 11
Q ss_pred -C--C-CCCcEEEecccC-CCCCCceeEEEEecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHH
Q 012718 257 -Q--G-LDADFLVASSHK-MCGPTGIGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGL 330 (458)
Q Consensus 257 -~--~-~~~d~~~~s~~K-~~gp~g~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 330 (458)
. + -++|+++.|.|| ++.|.|+++++++++ .++.+...+.+ ...++| .+.+
T Consensus 249 ~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g--------------------~~s~Sp----sL~l 304 (450)
T 3bc8_A 249 QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG--------------------RASASP----SLDV 304 (450)
T ss_dssp HHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCS--------------------CBCSHH----HHHH
T ss_pred HHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhc--------------------CCcccH----HHHH
Confidence 1 1 258999999999 567999999998643 33322211110 111112 2444
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeC------CCChHHHHHHHhh
Q 012718 331 GAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVE------NIHPTDIATLLDQ 401 (458)
Q Consensus 331 ~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~l~~ 401 (458)
+.++..+...++.+..++..++++++.+.|++++ +.+++..+.. +.-..+.+. +.+..++.-.+..
T Consensus 305 ~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~-----~~~~~~~l~~~~~~~~~D~tkl~i~~~~ 379 (450)
T 3bc8_A 305 LITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN-----PISLAMTLKTIDGHHDKAVTQLGSMLFT 379 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTC-----SSEEEEECTTTSSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccC-----CCcceeecccccccccCCCceeEEEecC
Confidence 4554444555677777778899999999998876 7777664421 111223333 2344556655554
Q ss_pred hcCe---Eec-cC-------C-CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 402 QYGV---ATR-SG-------H-HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 402 ~~gi---~~~-~g-------~-~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
. |+ .+. +| . +-....+..+....++-+.+++..+.+|+++++++|+++.+++++
T Consensus 380 ~-g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 380 R-QVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp T-TCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4 43 221 00 0 000011122333678888888889999999999999999876654
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-23 Score=206.48 Aligned_cols=319 Identities=14% Similarity=0.094 Sum_probs=211.1
Q ss_pred CCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
|..++.+.+++.+.+.+... . + ...+...++.+.|+++++ .. +.++|++||++|+..++..++ ....
T Consensus 115 Gh~~p~V~~Av~~q~~~~~~---~-----~-~~~~~~~~Lae~L~~~~p-~~-~~v~~~nSGseA~~~Aik~ar--~~tg 181 (465)
T 2yky_A 115 GHSHPVIRAAVERALAVGLN---L-----S-TQTENEALFAEAVCDRFP-SI-DLVRFTNSGTEANLMALATAT--AITG 181 (465)
Confidence 34578888888887765211 0 0 124455678889999985 22 389999999999999998653 2356
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCC--eEEEEeCCCCCCCCHHHHHHhhc---CCceEEEEecccCcCccccc----H
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGA--NLKFLNLNDDESPDLDKLKEMLS---RKTKLVVIHHISNMLASILP----I 227 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~--~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----l 227 (458)
+++|++.+.+||+.......-....|+ .+..++. .|++.|++.++ +++++|+++.+++++|.+.| +
T Consensus 182 r~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l 256 (465)
T 2yky_A 182 RKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-----NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFL 256 (465)
Confidence 789999999999765432200012233 2333332 27889999887 57889999888888998887 9
Q ss_pred HHHHHHHHhcCcEEEEeccccCCccc--CCCCC--CCCcEEEecccCCCCC-CceeEEEEeccccccCCCccccCcceEe
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMV--VDVQG--LDADFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISD 302 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~--~~~~~--~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~ 302 (458)
++|.++|+++|+++|+|++|+ +... ...+. ..+|++ +++|.+|+ ..+|++++++++++.+.+...+....
T Consensus 257 ~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~-- 331 (465)
T 2yky_A 257 DLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAH-- 331 (465)
Confidence 999999999999999999999 4221 11122 236654 68897775 22899999999888776521110000
Q ss_pred eecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCCCcCcccc
Q 012718 303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP-NIRIYGPKPSEHVQRAA 381 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~ 381 (458)
....+.+....++..++|+.+.+ +.+.++++++.+++.+.|+++. ...+.... ...+.
T Consensus 332 --------------~~T~~~npla~aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v----~g~G~ 390 (465)
T 2yky_A 332 --------------AGTFNNNILTMSAGHAALTQIYT---RQAASDLSASGDRFRANLNRIAVENQAPLQF----TGLGS 390 (465)
Confidence 00113444555666677777755 3567777888888888876651 11221111 12366
Q ss_pred EEEEEeCC--C------------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 382 LCSFNVEN--I------------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 382 ~v~~~~~~--~------------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
++++.+.+ . ....+.+.+.++ ||.+.++.+ +. ++..++++||++++++|
T Consensus 391 ~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-GV~v~p~~~------------~~----~s~~~t~edid~~l~~l 453 (465)
T 2yky_A 391 LGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRK-GIYLAPRGM------------YA----LSLEIADAGRDAFAEAL 453 (465)
Confidence 88886653 1 134677888888 999987541 11 34448999999999999
Q ss_pred HHHHHhhhc
Q 012718 448 NETVSFFNV 456 (458)
Q Consensus 448 ~~~~~~~~~ 456 (458)
++++++++.
T Consensus 454 ~~~l~~~~~ 462 (465)
T 2yky_A 454 ADFIGEQRA 462 (465)
Confidence 999987754
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=176.68 Aligned_cols=305 Identities=14% Similarity=0.121 Sum_probs=205.0
Q ss_pred HHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC---C
Q 012718 116 ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---D 192 (458)
Q Consensus 116 ~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~---~ 192 (458)
+.++|+.+ |.+.....++++|+|.++..++.+........+++|+++...|.|+..++ ...|+++++++.. +
T Consensus 122 ~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAl----iL~Gl~Pv~V~p~~d~~ 196 (501)
T 3hl2_A 122 VLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM----ITAGFEPVVIENVLEGD 196 (501)
T ss_dssp HHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH----HHTTCEEEEECEEEETT
T ss_pred HHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHH----HHcCCeEEEEeeeeccc
Confidence 44555555 99865568889999966666655542100012499999999999875444 4459999999873 3
Q ss_pred CCCCCHHHHHHhhcC---CceEEEEec-ccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCC-Cc
Q 012718 193 DESPDLDKLKEMLSR---KTKLVVIHH-ISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLD-AD 262 (458)
Q Consensus 193 ~~~~d~~~l~~~l~~---~~~~v~~~~-~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~-~d 262 (458)
...+|++.++++|++ +..++++.. +.+..|.+.|+++|+++||+||++++||+||+.-.. |...-..| +|
T Consensus 197 ~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD 276 (501)
T 3hl2_A 197 ELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID 276 (501)
T ss_dssp EEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred ccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence 467899999999975 223334333 344355678999999999999999999999995442 11111235 99
Q ss_pred EEEecccC-CCCCCceeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh
Q 012718 263 FLVASSHK-MCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI 340 (458)
Q Consensus 263 ~~~~s~~K-~~gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 340 (458)
+++.|.|| ++.|-|.|++++++ +.++.+...+ .|+.+....+.+.+++..+...
T Consensus 277 ~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~y------------------------PGr~S~Spsldl~~tLL~lGr~ 332 (501)
T 3hl2_A 277 AFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMY------------------------PGRASASPSLDVLITLLSLGSN 332 (501)
T ss_dssp EEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTS------------------------CSCBCSHHHHHHHHHHHHHHHH
T ss_pred EEEecccccceeecCceEEEeCCHHHHHHHHHhC------------------------CCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999 67788877777765 3444432211 1344455567777888888888
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCcccc-EEEEEeCCC------ChHHHHHHHhhhcCeE----
Q 012718 341 GMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAA-LCSFNVENI------HPTDIATLLDQQYGVA---- 406 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~-~v~~~~~~~------~~~~~~~~l~~~~gi~---- 406 (458)
|+.++.++..++.++|.+.|+++ -+-+++..+. .+ -+++.+... ...++-..|..+ +|.
T Consensus 333 Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~------n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r-~vsG~Rv 405 (501)
T 3hl2_A 333 GYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPH------NPISLAMTLKTLDEHRDKAVTQLGSMLFTR-QVSGARV 405 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTT------CSSEEEEECTTSCTTTSCHHHHHHHHHHHT-TCCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCC------CceeEEEecccccccccccHHHHHHHHHhc-CCCccee
Confidence 89999999999999999999875 2344443331 23 355565432 134666777766 662
Q ss_pred eccCCCCC--hhhHhhcCC------CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 407 TRSGHHCA--QPLHRYLGV------NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 407 ~~~g~~~~--~~~~~~~g~------~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+.+|.... .-.+..||. ..++-++.....+.+|||.++++|++++.++++
T Consensus 406 v~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 406 VPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp ECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 23332000 000011111 468888888889999999999999999988765
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-18 Score=168.71 Aligned_cols=339 Identities=15% Similarity=0.164 Sum_probs=220.1
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|-..+.+.+++.+.+.+........ ...+...++-+.|++++..+..+.++|++||+
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~------~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGs 135 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMV------TPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGA 135 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTT------SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCc------cCcHHHHHHHHHHHHhCCCCCCcEEEEeCChH
Confidence 455677753 345678899999998887642211111 01223335667788888654334789999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHH-----c-----CCeEEEEeCCCC------CCCCHHHHHH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQK-----T-----GANLKFLNLNDD------ESPDLDKLKE 203 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~-----g~~~~~v~~~~~------~~~d~~~l~~ 203 (458)
+|++.+++..+ ....+++|+....+||+........... . .-.+..+|.... ...+.+.+++
T Consensus 136 EA~e~AlklAr--~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 213 (456)
T 4atq_A 136 EAVENAVKVAR--LATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKR 213 (456)
T ss_dssp HHHHHHHHHHH--HHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHH
T ss_pred HHHHHHHHHHh--hhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHH
Confidence 99999998764 2456779999999999887544432111 0 113455654311 1113333333
Q ss_pred hh-------c-CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccC-Cccc--C--CCCCCCCcEEEe
Q 012718 204 ML-------S-RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV-PHMV--V--DVQGLDADFLVA 266 (458)
Q Consensus 204 ~l-------~-~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~-g~~~--~--~~~~~~~d~~~~ 266 (458)
.+ . .++.+|+++.++...|.+.| +++|.++|++||+++|+|+++.. |..- + ......+|+++.
T Consensus 214 ~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~ 293 (456)
T 4atq_A 214 AITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITM 293 (456)
T ss_dssp HHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEE
T ss_pred HHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhh
Confidence 22 2 25789999999999998887 89999999999999999999873 3221 1 122335999985
Q ss_pred cccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 267 SSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 267 s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
.| +.|...+|.+++++++.+.+.+...++ +.+.++...++..++|+.+.+.+ +
T Consensus 294 --gK~lggg~P~~av~~~~~i~~~~~~~~~~~---------------------Tf~gnpla~aaala~L~~i~~~~---l 347 (456)
T 4atq_A 294 --AKGIAGGLPLSAITGRADLLDAVHPGGLGG---------------------TYGGNPVACAAALAAIDTMEQHD---L 347 (456)
T ss_dssp --CGGGGTTSSCEEEEEEHHHHTTSCTTSSCC---------------------SSSSCHHHHHHHHHHHHHHHHTT---H
T ss_pred --hhcccCcCCceeeEecHHHHhcccccCCCC---------------------CCCCChHHHHhhHHHHHHHhhcc---H
Confidence 57 444444899999999887776543322 22456777777778888887754 4
Q ss_pred HHHHHHHHHHHHHHHhcC----CC--EEEeCCCCCCcCccccEEEEEeCCC-----C---hHHHHHHHhhhcCeEeccCC
Q 012718 346 HAYEMELAKYLYENLLSI----PN--IRIYGPKPSEHVQRAALCSFNVENI-----H---PTDIATLLDQQYGVATRSGH 411 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~----~~--~~~~~~~~~~~~~~~~~v~~~~~~~-----~---~~~~~~~l~~~~gi~~~~g~ 411 (458)
.++.+++.+++.+.|+++ +. ..+.... ...|.++.+.+... + ...+.+.+.++ |+.+.+..
T Consensus 348 ~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~V----RG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~-Gvl~~~~g 422 (456)
T 4atq_A 348 NGRARHIEELALGKLRELAAELSAGGGSVVGDI----RGRGAMLAIELVQPGSKEPNAELTKAVAAACLKE-GVIILTCG 422 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----CEEEE----EEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCceEEe----eecceEEEEEEecCCCCCcCHHHHHHHHHHHHHC-CCEEEecC
Confidence 455555556555555432 21 1111111 23356777776321 1 34677888888 99886432
Q ss_pred CCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 412 ~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
. ..+.||+.+.+..|++|+|++++.|+++++.
T Consensus 423 ~----------~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 423 T----------YGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp T----------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred C----------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 1468999999989999999999999999874
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-19 Score=167.91 Aligned_cols=339 Identities=14% Similarity=0.132 Sum_probs=221.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCC-cchhhhHHHHHHHH-HHHHHHHHcCCCCCCc--EEEeCChhHHHHHHHHHcC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRG-IHFLSAKATDEYEL-ARKKVAAFINASDSGE--IVFTKNATEAINLVAYSWG 150 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~la~~~g~~~~~~--v~~t~g~t~a~~~~~~~l~ 150 (458)
+-...++.+++++-..+.+.+..-+.+ .++.|-...+.+|. ++++..++||++..+. -|-..||+.|+..+..++
T Consensus 62 SEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~Al- 140 (490)
T 3ou5_A 62 SENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL- 140 (490)
T ss_dssp TCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-
T ss_pred CCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHH-
Confidence 444678888988887776533322112 23333344455554 7888999999986521 255679999999999999
Q ss_pred CCCCCCCCEEEEcCCCCccchH-HHHH---HHHHcC--CeEEEEeCC-CCCCCCHHHHHHhhcC-CceEEEEecccCcCc
Q 012718 151 LSNLKSGDEVILTVAEHHSAIV-PWQL---VAQKTG--ANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNMLA 222 (458)
Q Consensus 151 ~~~~~~g~~vl~~~~~~~s~~~-~~~~---~a~~~g--~~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG 222 (458)
++|||+|+..+..+.+++. .+.. .....| .+...++++ +++.+|.+.+++...+ ++++|++-.-. .-
T Consensus 141 ---l~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~Sa--Y~ 215 (490)
T 3ou5_A 141 ---LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA--YA 215 (490)
T ss_dssp ---CC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSS--CC
T ss_pred ---cCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCcc--Cc
Confidence 8999999998887765532 1110 001112 244555555 3488999999988765 88999986543 33
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCc-----ccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccc--------
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPH-----MVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLS-------- 288 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~-------- 288 (458)
..+|++++.++|++.|+++++|.+|-.|. .|-.+. .+|++++|.|| +.||. .|+++++++...
T Consensus 216 r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPr-GG~Il~~~~~~~~~~k~~~~ 292 (490)
T 3ou5_A 216 RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGRE 292 (490)
T ss_dssp SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCS-CEEEEEECSEEEECC--CCE
T ss_pred cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc--cceEEeccccccccCCC-ceEEEeccccccccccccch
Confidence 56789999999999999999999998443 332232 28999999999 66777 588888875321
Q ss_pred -------cCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Q 012718 289 -------AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 289 -------~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
++...... -..|.|....+++.+.++.......+..+.+.+.++++.|.+.|.
T Consensus 293 ~~~~~~kkin~aVFP--------------------g~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~ 352 (490)
T 3ou5_A 293 IPYTFEDRINFAVFP--------------------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALL 352 (490)
T ss_dssp EECCCHHHHHHHHTT--------------------TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCc--------------------cccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 11100000 014678888888888888776555578999999999999999999
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC----CCC
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH----FYN 435 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~----~~~ 435 (458)
+. |++++...-. ..++.+.+. +.+..+..+.|.+. ||.+.-...+.- ..--.++.|||+.. ...
T Consensus 353 ~~-G~~vvsGgTd-----nHlvLvDl~~~g~tG~~ae~~Le~a-gItvNkN~iP~D---~sp~~~SGiRiGTpa~TtRG~ 422 (490)
T 3ou5_A 353 ER-GYSLVSGGTD-----NHLVLVDLRPKGLDGARAERVLELV-SITANKNTCPGD---RSAITPGGLRLGAPALTSRQF 422 (490)
T ss_dssp HT-TCEEGGGSCS-----SSEEEEECGGGTCCHHHHHHHHHHT-TEECEEECCTTC---CCSSSCSEEEEESHHHHHTTC
T ss_pred hC-CCeeecCCCC-----ceEEEEeccccCCCHHHHHHHHHHc-CcEECCCCCCCC---CCCCCCCeeEECCHHHHhCCC
Confidence 87 9999854321 335666664 56778888888887 998753221110 00112678999865 234
Q ss_pred CHHHHHHHHHHHHHHHH
Q 012718 436 TKEDVDEFIHALNETVS 452 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~ 452 (458)
.++|++++.+.|.++++
T Consensus 423 ~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 423 REDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88999999999988775
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-19 Score=172.49 Aligned_cols=323 Identities=14% Similarity=0.135 Sum_probs=209.6
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|..+ .|-..+.+.+++.+.+..... .+.. .....++.+.|++.+..- +.+.|++|||
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~---~~~~------~~~~~~lae~l~~~~p~~--~~v~f~~SGs 153 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGIN---LTGH------NLLEGRLARLICERFPQI--EQLRFTNSGT 153 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSC---CCSE------ESSHHHHHHHHHHHSTTC--SEEEEESSHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCC---ccCC------cHHHHHHHHHHHHhCCCC--CEEEEeCchH
Confidence 4556777532 345678999999988875311 1111 112235667788887532 4899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH--HcCCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEE
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ--KTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVI 214 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~--~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~ 214 (458)
+|+..+++..+ ....+++|+..+.+||+....+..... ........+|.+ |++.+++.+++ ++.+|++
T Consensus 154 EA~e~AiklAr--~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIv 226 (454)
T 4ao9_A 154 EANLMALTAAL--HFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLV 226 (454)
T ss_dssp HHHHHHHHHHH--HHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEE
T ss_pred HHHHHHHHHHH--hcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEe
Confidence 99999998763 234567899999999975422111000 001233444433 88888888864 5789999
Q ss_pred ecccCcCccccc----HHHHHHHHHhcCcEEEEeccccCCcccC----CCCCCCCcEEEecccCC-CCCCceeEEEEecc
Q 012718 215 HHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHMVV----DVQGLDADFLVASSHKM-CGPTGIGFLFGKSD 285 (458)
Q Consensus 215 ~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~~~----~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~ 285 (458)
+.++...|.+.| +++|.++|++||+++|+|+++. |..-. ......+|+++ +.|. .|+..+|.+.++++
T Consensus 227 EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t--~gK~lggG~Piga~~~~~e 303 (454)
T 4ao9_A 227 EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTT--LGKYIGGGMSFGAFGGRAD 303 (454)
T ss_dssp CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEE--EEGGGGTTSSCEEEEECHH
T ss_pred ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEE--eccccCCCCcceeeeeHHH
Confidence 999999999998 9999999999999999999997 32211 11123489987 6784 34445899999999
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCC--CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG--TPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+++.+.+.... .+..+ +.|+...++..++|+.+.+ +.+.+++.++.++|.+.|+++
T Consensus 304 i~~~~~~~~~~-------------------~~h~~T~~gnPla~AAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l 361 (454)
T 4ao9_A 304 VMALFDPRTGP-------------------LAHSGTFNNNVMTMAAGYAGLTKLFT---PEAAGALAERGEALRARLNAL 361 (454)
T ss_dssp HHGGGCTTTCS-------------------CCCCCTTTTCHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCC-------------------ccccCCCCCCHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHH
Confidence 88766532110 01122 3455556666666666644 556677777777777776543
Q ss_pred ----CC-EEEeCCCCCCcCccccEEEEEeCCC-----------C---hHHHHHHHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 364 ----PN-IRIYGPKPSEHVQRAALCSFNVENI-----------H---PTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 364 ----~~-~~~~~~~~~~~~~~~~~v~~~~~~~-----------~---~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
+- .++ ...+.++.+.+... + ...+...+.++ ||++.|.
T Consensus 362 ~~~~~~~~~v--------rg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~-------------- 418 (454)
T 4ao9_A 362 CANEGVAMQF--------TGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPR-------------- 418 (454)
T ss_dssp HHHHTBSCEE--------EEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTT--------------
T ss_pred HhhCCCCEEE--------eeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCC--------------
Confidence 11 111 12245666655210 1 13456677788 9998653
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 425 ASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
+.+.+++. +|++|||+++++|++++.+...
T Consensus 419 ~~~~~s~~--~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 419 GFVVLSLP--LTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp CEEECCTT--CCHHHHHHHHHHHHHHHHHSGG
T ss_pred CCEEEeCC--CCHHHHHHHHHHHHHHHHhccc
Confidence 23444544 7999999999999999987654
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=157.43 Aligned_cols=344 Identities=15% Similarity=0.141 Sum_probs=216.8
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|..+ .|--.+.+.+++.+.+.+...... .. + ...+...++-+.|++..+.+-+ .|.|++||+
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~-~~---~-~~~~~~~~lAe~L~~~~p~~~~-~v~f~~sGs 138 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHA-FF---G-RMSDQTVMLSEKLVEVSPFDSG-RVFYTNSGS 138 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCC-CT---T-EEEHHHHHHHHHHHHHSSCSSC-EEEEESSHH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccc-cc---c-ccCHHHHHHHHHHHhhCCCCcc-EEEEeCchH
Confidence 4556777532 345678999999998887532111 00 0 0122233566778888865544 899999999
Q ss_pred HHHHHHHHHcCC----CCCCCCCEEEEcCCCCccchHHHHHHHHH-----cC---CeEEEEeCC------CCCCC-----
Q 012718 140 EAINLVAYSWGL----SNLKSGDEVILTVAEHHSAIVPWQLVAQK-----TG---ANLKFLNLN------DDESP----- 196 (458)
Q Consensus 140 ~a~~~~~~~l~~----~~~~~g~~vl~~~~~~~s~~~~~~~~a~~-----~g---~~~~~v~~~------~~~~~----- 196 (458)
+|++.+++..+. .......+|+....+||+.......+... .+ .....++.. ..+..
T Consensus 139 EA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 218 (473)
T 4e3q_A 139 EANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFV 218 (473)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHH
Confidence 999999986421 01234568999999999876544432110 11 123334332 11111
Q ss_pred --CHHHHHHhhc----CCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc--C--CCCCCCC
Q 012718 197 --DLDKLKEMLS----RKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV--V--DVQGLDA 261 (458)
Q Consensus 197 --d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~--~--~~~~~~~ 261 (458)
..+++++.+. +++.+|+++.++...|.+.| +++|.++|++||+++|.|+++. +|... + ......+
T Consensus 219 ~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P 298 (473)
T 4e3q_A 219 ARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTP 298 (473)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCC
Confidence 1223444443 35789999999999998887 8999999999999999999987 33221 1 1123459
Q ss_pred cEEEecccCCC-CC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Q 012718 262 DFLVASSHKMC-GP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339 (458)
Q Consensus 262 d~~~~s~~K~~-gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 339 (458)
|+++ +.|.+ |+ ..+|.+++++++.+.+......... + .... ..+.|+...++..++|+.+.+
T Consensus 299 Di~t--~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~----~---------~hg~-T~~Gnpla~Aaala~L~~i~~ 362 (473)
T 4e3q_A 299 DAII--SSKNLTAGFFPMGAVILGPELSKRLETAIEAIEE----F---------PHGF-TASGHPVGCAIALKAIDVVMN 362 (473)
T ss_dssp SEEE--ECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSC----C---------CCCC-TTTTCHHHHHHHHHHHHHHHH
T ss_pred ChHH--hcccccCCCCCcccccccHHHHHHhccccccccc----c---------ccCC-CCCCCcchhhhhhhhhhhhcc
Confidence 9998 67843 33 4489999999876654321100000 0 0000 124566677777788888776
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCC-------C-----ChHHHHHHHhhhcC
Q 012718 340 IGMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVEN-------I-----HPTDIATLLDQQYG 404 (458)
Q Consensus 340 ~g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~-------~-----~~~~~~~~l~~~~g 404 (458)
.+ +.++.+++.++|.+.|+++ +.+.- . ...|.++.+.+.. . ....+.+.+.++ |
T Consensus 363 ~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~---v----RG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-G 431 (473)
T 4e3q_A 363 EG---LAENVRRLAPRFEERLKHIAERPNIGE---Y----RGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL-G 431 (473)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHHTTSTTEEE---E----EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-T
T ss_pred cc---HHHHHHHHHHHHHHHHHHHhcCCCeeE---E----eecceEEEEEEecCccccccccccHHHHHHHHHHHHHC-C
Confidence 44 4555566666776666543 44321 1 2235577776531 0 134678888888 9
Q ss_pred eEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 405 VATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 405 i~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.+++. .+.+|+++++..|++|+|++++.++++++++.
T Consensus 432 ll~~~~-------------g~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 432 LICRPL-------------GQSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp EECEEE-------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEec-------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 998753 35899999998999999999999999998763
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=159.03 Aligned_cols=343 Identities=10% Similarity=0.051 Sum_probs=212.4
Q ss_pred EEecCCC------CCCC-cHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHH
Q 012718 69 VYLDNAA------TSQK-PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141 (458)
Q Consensus 69 i~l~~~~------~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a 141 (458)
-|||..+ .|.. .+.+.+++.+.+.++......+ . ..+...++.+.|+++++...-+.++|++||++|
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~-~-----~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA 454 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPE-N-----VYEPALKCAELLLDGVGKGWASRVYFSDNGSTA 454 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTT-E-----ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccc-c-----CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHH
Confidence 4666542 3445 7889999999887753221001 1 123334677888888874422389999999999
Q ss_pred HHHHHHHc-CCCCCC------------CCCEEEEcCCCCccchHHHHHHHHH---c---------CCe------------
Q 012718 142 INLVAYSW-GLSNLK------------SGDEVILTVAEHHSAIVPWQLVAQK---T---------GAN------------ 184 (458)
Q Consensus 142 ~~~~~~~l-~~~~~~------------~g~~vl~~~~~~~s~~~~~~~~a~~---~---------g~~------------ 184 (458)
++.++... +....+ .+.+|+..+.+||+.+.....+... . +..
T Consensus 455 ~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 534 (831)
T 4a0g_A 455 IEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN 534 (831)
T ss_dssp HHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEET
T ss_pred HHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccC
Confidence 99998865 100001 2447999999999887655544210 0 100
Q ss_pred -EEEEeCCCCC---------CCC------------------HHHHHHhhc--------CCceEEEEecc-cCcCccccc-
Q 012718 185 -LKFLNLNDDE---------SPD------------------LDKLKEMLS--------RKTKLVVIHHI-SNMLASILP- 226 (458)
Q Consensus 185 -~~~v~~~~~~---------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~n~tG~~~~- 226 (458)
+..++..... .-+ .+.|++.|. +++++|+++.+ ++..|...+
T Consensus 535 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~ 614 (831)
T 4a0g_A 535 GSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVD 614 (831)
T ss_dssp TEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEEC
T ss_pred CceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCC
Confidence 0112222110 001 256777764 24689999996 899998886
Q ss_pred ---HHHHHHHHHhcCcEEEEecccc-CCccc--CCC--CCCCCcEEEecccCCCCCC--ceeEEEEeccccccCCCcccc
Q 012718 227 ---IEEIVHWSHDVGAKVLVDACQS-VPHMV--VDV--QGLDADFLVASSHKMCGPT--GIGFLFGKSDLLSAMPPFLGG 296 (458)
Q Consensus 227 ---l~~i~~l~~~~~~~vivD~a~~-~g~~~--~~~--~~~~~d~~~~s~~K~~gp~--g~G~l~~~~~~~~~l~~~~~g 296 (458)
+++|.++|++||+++|+|+++. +|... +.. ....+|+++ ++|.+|.. .+|++++++++++.+......
T Consensus 615 ~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiit--lsK~L~gG~~Plgav~~~~~i~~~~~~~~~~ 692 (831)
T 4a0g_A 615 PLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIAC--FAKLLTGGMVPLAVTLATDAVFDSFSGDSKL 692 (831)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEE--ECGGGGTTSSCCEEEEECHHHHHTTCSSCGG
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEE--EecccccCccCcEEEEECHHHHHHHhccccc
Confidence 8999999999999999999987 33321 111 123488875 88955432 379999999987776532100
Q ss_pred CcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHH-HHHHHHHHH----HHHHHHHHhcCCCEEEeCC
Q 012718 297 GEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ-KIHAYEMEL----AKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~-~~~~~~~~l----~~~l~~~L~~~~~~~~~~~ 371 (458)
.. + ...+ +.+.++...++..++|+.+.+.++. ++.+....+ .+.+.+.+.+.+.+.....
T Consensus 693 ~~-----~---------~hg~-T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg 757 (831)
T 4a0g_A 693 KA-----L---------LHGH-SYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVV 757 (831)
T ss_dssp GS-----C---------CCCC-TTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE
T ss_pred cc-----c---------eeec-CCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee
Confidence 00 0 0011 2245666777777888887654321 111111111 2234455556665543322
Q ss_pred CCCCcCccccEEEEEeCCC---------ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENI---------HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDE 442 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~---------~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~ 442 (458)
.|.++.+.+... ...++.+.+.++ ||.+++. .+.+|+++++.+|++||++
T Consensus 758 -------~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gv~v~p~-------------g~~lrl~pp~~~t~e~id~ 816 (831)
T 4a0g_A 758 -------IGTLFALELKADASNSGYASLYAKSLLIMLRED-GIFTRPL-------------GNVIYLMCGPCTSPEICRR 816 (831)
T ss_dssp -------ETTEEEEEEC---------CHHHHHHHHHHHHT-TEECCCB-------------TTEEEEECCTTCCHHHHHH
T ss_pred -------cccEEEEEEecCccccccchHHHHHHHHHHHHC-CcEEEec-------------CCEEEEECCCCCCHHHHHH
Confidence 266777777421 134688888888 9999864 3689999988899999999
Q ss_pred HHHHHHHHHHhhh
Q 012718 443 FIHALNETVSFFN 455 (458)
Q Consensus 443 l~~~l~~~~~~~~ 455 (458)
++++|.++++++.
T Consensus 817 ~~~~l~~~l~~l~ 829 (831)
T 4a0g_A 817 LLTKLYKRLGEFN 829 (831)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 458 | ||||
| d1t3ia_ | 408 | c.67.1.3 (A:) Probable cysteine desulfurase SufS { | 1e-121 | |
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 1e-118 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 8e-85 | |
| d1eg5a_ | 376 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 1e-73 | |
| d1qz9a_ | 404 | c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescen | 6e-63 | |
| d1elua_ | 381 | c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocyst | 4e-43 | |
| d1vjoa_ | 377 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 9e-34 | |
| d1bjna_ | 360 | c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT | 3e-33 | |
| d2ch1a1 | 388 | c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas | 1e-31 | |
| d1w23a_ | 360 | c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT | 2e-31 | |
| d2c0ra1 | 361 | c.67.1.4 (A:2-362) Phosphoserine aminotransferase, | 5e-30 | |
| d2bkwa1 | 382 | c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe | 5e-30 | |
| d1h0ca_ | 388 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 3e-27 | |
| d1m32a_ | 361 | c.67.1.3 (A:) 2-aminoethylphosphonate transaminase | 3e-27 | |
| d1c4ka2 | 462 | c.67.1.5 (A:108-569) Ornithine decarboxylase major | 9e-26 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 6e-23 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 1e-20 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 5e-18 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 2e-17 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 3e-15 | |
| d1wyua1 | 437 | c.67.1.7 (A:1-437) Glycine dehydrogenase (decarbox | 1e-11 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 2e-10 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 4e-08 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 4e-07 | |
| d1mdoa_ | 376 | c.67.1.4 (A:) Aminotransferase ArnB {Salmonella ty | 2e-06 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 3e-06 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-05 | |
| d1bs0a_ | 383 | c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a | 6e-05 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 3e-04 | |
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 0.001 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 0.002 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 0.002 | |
| d2bwna1 | 396 | c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rho | 0.004 |
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Score = 357 bits (917), Expect = e-121
Identities = 253/404 (62%), Positives = 309/404 (76%), Gaps = 3/404 (0%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFPIL+QE+ G LVYLDNAATSQKP AVL+ L +YYE N+NVHRG H LS +ATD
Sbjct: 8 RQDFPILNQEING-HPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATD 66
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
YE R KVA FINA EIV+T+NATEAINLVAYSWG++NLK+GDE+I TV EHHS +
Sbjct: 67 AYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNL 126
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ+VA KTGA LKF+ L++ ES DL+ K +LS KTKLV + HISN L + P EEI
Sbjct: 127 VPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIA 186
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GAKVLVDACQS PH +DVQ +D D+LVAS HKMC PTGIGFL+GK ++L AMP
Sbjct: 187 QLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMP 246
Query: 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEME 351
PF GGGEMI++VF DH T + P +FEAGTPAI EAI LGAA+DYL+ +GM+ IH YE+E
Sbjct: 247 PFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVE 306
Query: 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGH 411
L YL++ L IP +R+YGP P +H RAAL SFNV +H +D+AT++D Q G+A RSGH
Sbjct: 307 LTHYLWQGLGQIPQLRLYGPNP-KHGDRAALASFNVAGLHASDVATMVD-QDGIAIRSGH 364
Query: 412 HCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455
HC QPLHR + SARASL+FYNTKE++D F+ +L T+ FF+
Sbjct: 365 HCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFS 408
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 351 bits (900), Expect = e-118
Identities = 186/404 (46%), Positives = 253/404 (62%), Gaps = 8/404 (1%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFP+L +EV G L YLD+AA++QKP V+ A +Y + VHRGIH LSA+AT+
Sbjct: 8 RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 66
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
+ E RK+ + FINA + E+VF + TE INLVA SWG SN+++GD +I++ EHH+ I
Sbjct: 67 KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 126
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ++ + GA L+ + LN D + L+ L + KT+L+ I H+SN+L + P+ E++
Sbjct: 127 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 186
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GAKVLVD Q+V H VDVQ LD DF V S HK+ GPTGIG L+ K LL MP
Sbjct: 187 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 246
Query: 292 PFLGGGEMISDV-FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEM 350
P+ GGG MI+ V + +T+ P RFEAGTP G IGLGAA++Y+S +G+ I YE
Sbjct: 247 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQ 306
Query: 351 ELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSG 410
L Y L S+P++ +YGP+ R + +FN+ H D+ + LD YG+A R+G
Sbjct: 307 NLMHYALSQLESVPDLTLYGPQN-----RLGVIAFNLGKHHAYDVGSFLD-NYGIAVRTG 360
Query: 411 HHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454
HHCA PL Y V A RASL YNT E+VD + L
Sbjct: 361 HHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 404
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 263 bits (673), Expect = 8e-85
Identities = 92/397 (23%), Positives = 157/397 (39%), Gaps = 36/397 (9%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNS--NVHRGIHFLSAKATDEYELARKKVAAFINA 126
+YLD +AT+ V + + + + N H +A + ++AR ++A + A
Sbjct: 4 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 63
Query: 127 SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186
D EIVFT ATE+ NL K G +I + H A++ ++ G +
Sbjct: 64 -DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITS-KTEHKAVLDTCRQLEREGFEVT 121
Query: 187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
+L + DL +L+ + T LV I H++N + + I I G VDA
Sbjct: 122 YLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDAT 181
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306
QSV + +D+ L D + S HK+ GP GIG L+ + + + GG
Sbjct: 182 QSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGH------- 234
Query: 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366
+GT + + +G+G A M L L+ + I +
Sbjct: 235 -------ERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEV 286
Query: 367 RIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQP------LHRY 420
+ G A NV + + ++ +A SG C + R
Sbjct: 287 YLNGDLE-----HGAPNILNVSFNYVEGESLIMA-LKDLAVSSGSACTSASLEPSYVLRA 340
Query: 421 LGVN-----ASARASLHFYNTKEDVDEFIHALNETVS 452
LG+N +S R SL + T+E++D I + +++
Sbjct: 341 LGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG 377
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Score = 234 bits (597), Expect = 1e-73
Identities = 92/398 (23%), Positives = 164/398 (41%), Gaps = 38/398 (9%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
VY DN AT++ VL+ + +Y N + H + +A E AR+KVA +
Sbjct: 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPN-SAHGMGIEANLHMEKAREKVAKVLGV-S 60
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
EI FT ATE+IN + + + K +I T EH + + + ++ K G +K++
Sbjct: 61 PSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK-GFKVKYV 119
Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE--EIVHWSHDVGAKVLVDAC 246
++ L++L++++ T LV I +N + +I P+E + + V VDA
Sbjct: 120 PVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAV 179
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306
Q++ + ++ L+ D+ S+HK GP G+G + + + P + GG
Sbjct: 180 QTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKG--VPIRPLIHGGGQ------- 230
Query: 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366
+GT + +G A++ + E +K + + +I
Sbjct: 231 -------ERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHI 283
Query: 367 RIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV--- 423
+ S + NI + + LL YG+ + C R V
Sbjct: 284 ITPLEISLPNT-----LSVSFPNIRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHVLDA 337
Query: 424 --------NASARASLHFYNTKEDVDEFIHALNETVSF 453
+ R SL YNT+E+VD F+ + E +SF
Sbjct: 338 MGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF 375
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Score = 207 bits (526), Expect = 6e-63
Identities = 73/409 (17%), Positives = 139/409 (33%), Gaps = 36/409 (8%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R F + + ++YLD + +P+A L Q N SA D
Sbjct: 19 RQQFALP-------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWN-SAGWRD 70
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
E ++A I A GE+V T + + V + E + V ++
Sbjct: 71 LSERLGNRLATLIGA-RDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIV--TETSN 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
P L + A++ ++L + + + T +V++ H++ + ++ +
Sbjct: 128 FPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALT 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM--CGPTGIGFLFGKSDLLSA 289
SH+ GA + D S + VD+ AD+ + ++K GP F++ L
Sbjct: 188 ALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDL 247
Query: 290 MPP--FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHA 347
+P G ++ +R+ GT I + +D + M +
Sbjct: 248 VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRR 307
Query: 348 Y---EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYG 404
+L L E + + + P+ EH +R + SF + L + G
Sbjct: 308 KSLALTDLFIELVEQRCAAHELTLVTPR--EHAKRGSHVSFEHP--EGYAVIQALIDR-G 362
Query: 405 VATRSGHHCAQPLHRYLGVNASARASL-HFYNTKEDVDEFIHALNETVS 452
V G + R Y T +V + + L E +
Sbjct: 363 VI---GDYREPR---------IMRFGFTPLYTTFTEVWDAVQILGEILD 399
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Score = 153 bits (387), Expect = 4e-43
Identities = 75/405 (18%), Positives = 138/405 (34%), Gaps = 38/405 (9%)
Query: 55 FPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYE 114
FP L Y + P L+A+ Y N +
Sbjct: 2 FPGL-------ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFS-IAANQHIQQLIA 53
Query: 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPW 174
R+ +A N D I T N T ++V + + GDE++LT EH I
Sbjct: 54 QLRQALAETFNV-DPNTITITDNVTTGCDIVLWGL---DWHQGDEILLTDCEHPGIIAIV 109
Query: 175 QLVAQKTGANLKFLNLNDDESPDLDKL------KEMLSRKTKLVVIHHISNMLASILPIE 228
Q +A + G +F + + ++ + +L +
Sbjct: 110 QAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMA 169
Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGF-LFGKSDLL 287
+ +VLVD QS + +D L+ D+ + HK L+ D L
Sbjct: 170 VCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCL 229
Query: 288 SAMPPFLGGGEM-ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM-QKI 345
+ P G + + +A+ RFE T A + GL AA+ G ++
Sbjct: 230 GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEER 289
Query: 346 HAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTD-IATLLDQQYG 404
+ + +++L+ L +P++ +A L SF V++ I L++Q
Sbjct: 290 YQAICQRSEFLWRGLNQLPHVHCLATSA----PQAGLVSFTVDSPLGHRAIVQKLEEQ-R 344
Query: 405 VATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449
+ R+ + RA H+ +E+++ + L +
Sbjct: 345 IYLRT-----------IADPDCIRACCHYITDEEEINHLLARLAD 378
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Score = 128 bits (322), Expect = 9e-34
Identities = 44/353 (12%), Positives = 102/353 (28%), Gaps = 21/353 (5%)
Query: 102 IHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVI 161
+ L + + + + I + T A+ ++N +V+
Sbjct: 42 VGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEAT-----IANAVEPGDVV 96
Query: 162 LTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNML 221
L + + + + + + + + ++ + H
Sbjct: 97 LIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETST 156
Query: 222 ASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH-KMCGPTGIGFL 280
+ P+E + + G +LVD S+ + + + D + S + G
Sbjct: 157 GARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPF 216
Query: 281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI 340
S + + ++ R T I L A+ ++
Sbjct: 217 TMSSRAI-EKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE 275
Query: 341 GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV-ENIHPTDIATLL 399
G+ + +YL+E L I + + L + + + + +A L
Sbjct: 276 GLANCWQRHQKNVEYLWERLEDIGLSLHVEKEY----RLPTLTTVCIPDGVDGKAVARRL 331
Query: 400 DQQYGVATRSGHHCAQPLHRYLGVNASARASLH-FYNTKEDVDEFIHALNETV 451
++ + G R L F + KE VD+ I AL + +
Sbjct: 332 LNEHNIEVGGGLGELAG--------KVWRVGLMGFNSRKESVDQLIPALEQVL 376
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Score = 126 bits (317), Expect = 3e-33
Identities = 53/385 (13%), Positives = 103/385 (26%), Gaps = 36/385 (9%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS---AKATDEYELARKKVAAFIN 125
++ ++ + P VLK Q +N + + +S + E A K +N
Sbjct: 2 IFNFSSGPAMLPAEVLKQAQQELRDWN-GLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLN 60
Query: 126 ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185
+ +++F GD+ + A+K
Sbjct: 61 VPSNYKVLFCHGGGRGQFAAVPLNI-----LGDKTTADYVDAGYWAASAIKEAKKYCTPN 115
Query: 186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDA 245
F + K +H+ N + I+E + DV V A
Sbjct: 116 VFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVV----VAA 171
Query: 246 CQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL 305
S + + + A + K GP G+ + + DLL S +
Sbjct: 172 DFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILND 231
Query: 306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365
+ S F PP+ + + +L G + L ++ +
Sbjct: 232 NGSMFNTPPTFAWYLSGLV---------FKWLKANGGVAEMDKINQQKAELLYGVIDNSD 282
Query: 366 IRIYGPKPSEHVQRAALCSFNV-ENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN 424
+ F + ++ G+ GH +
Sbjct: 283 FYRNDVAKR--NRSRMNVPFQLADSALDKLFLEESF-AAGLHALKGHRVVGGM------- 332
Query: 425 ASARASLHFYNTKEDVDEFIHALNE 449
RAS++ E V + E
Sbjct: 333 ---RASIYNAMPLEGVKALTDFMVE 354
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Score = 122 bits (307), Expect = 1e-31
Identities = 35/376 (9%), Positives = 102/376 (27%), Gaps = 23/376 (6%)
Query: 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK 136
S VL A+ N + A+ + + + + + +
Sbjct: 26 SNCSKRVLTAMTNTV----------LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSG 75
Query: 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESP 196
+A + + LSNL + +L A ++ + D
Sbjct: 76 SAHAGMEAM-----LSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFS 130
Query: 197 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV 256
+ + + K + + H + + P+E + H ++VDA S+ + +
Sbjct: 131 LETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYM 190
Query: 257 QGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316
+ D + + K+ G S + + L
Sbjct: 191 DKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYD 250
Query: 317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH 376
+ + A + L+ I + + + + + +
Sbjct: 251 EPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPR 310
Query: 377 VQRAALCSFNV-ENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYN 435
+ + + + + ++ + + + G + V + +
Sbjct: 311 HRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTF--GKAWRV-----GIMGECS 363
Query: 436 TKEDVDEFIHALNETV 451
T + + +++ E++
Sbjct: 364 TVQKIQFYLYGFKESL 379
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Score = 121 bits (304), Expect = 2e-31
Identities = 46/386 (11%), Positives = 105/386 (27%), Gaps = 35/386 (9%)
Query: 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS---AKATDEYELARKKVAAF 123
K V+ NA S P L+ Q +N + + LS + +E A+ +
Sbjct: 2 KQVFNFNAGPSALPKPALERAQKELLNFN-DTQMSVMELSHRSQSYEEVHEQAQNLLREL 60
Query: 124 INASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGA 183
+ + +I+F + + L+ G+ V+ + L A
Sbjct: 61 LQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAA 120
Query: 184 NLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV 243
+ K + S ++ + + + ++ A ++
Sbjct: 121 STKANSYQSI---------PDFSEFQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIA 171
Query: 244 DACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDV 303
D + + V + A + + + K DLL+ + +
Sbjct: 172 DMSSDILSRPLKVNQFGMIYAGAQKNLGPSG--VTVVIVKKDLLNTKVEQVPTMLQYATH 229
Query: 304 FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSI 363
S + PP+ + +D++ +G + A + E + + +
Sbjct: 230 IKSDSLYNTPPTFSIYMLRNV---------LDWIKDLGGAEAIAKQNEEKAKIIYDTIDE 280
Query: 364 PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV 423
N G + +Q G +GH
Sbjct: 281 SNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQ-GFVGLNGHRSVGGC------ 333
Query: 424 NASARASLHFYNTKEDVDEFIHALNE 449
RAS++ + + +
Sbjct: 334 ----RASIYNAVPIDACIALRELMIQ 355
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Score = 117 bits (294), Expect = 5e-30
Identities = 53/384 (13%), Positives = 114/384 (29%), Gaps = 35/384 (9%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS---AKATDEYELARKKVAAFIN 125
Y NA + P+ VL+ Q + Y + I +S A + A+ ++ A +
Sbjct: 4 AYNFNAGPAALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLG 62
Query: 126 ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185
+++F + + L ++ + V+ S A+ G
Sbjct: 63 NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVM-----TGSWASKALKEAKLIGDTH 117
Query: 186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDA 245
+ L KL+E+ + + H SN + + + ++ D
Sbjct: 118 VAASSEASNYMTLPKLQEIQLQDNAAYL-HLTSNE---TIEGAQFKAFPDTGSVPLIGDM 173
Query: 246 CQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL 305
+ D+ + A + K GP+G+ + + DL++ P L
Sbjct: 174 SSDILSRPFDLN--QFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVK 231
Query: 306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365
++S + PPS + + ++ G + L + +
Sbjct: 232 NNSLYNTPPSFG---------IYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSG 282
Query: 366 IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425
G + + + +Q+ G GH L
Sbjct: 283 GFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQE-GFVGLKGHRSVGGL-------- 333
Query: 426 SARASLHFYNTKEDVDEFIHALNE 449
RAS++ E + + +
Sbjct: 334 --RASIYNAVPYESCEALVQFMEH 355
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 117 bits (294), Expect = 5e-30
Identities = 51/378 (13%), Positives = 106/378 (28%), Gaps = 26/378 (6%)
Query: 80 PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139
AV KAL H F + + R + + S V + T
Sbjct: 15 SGAVQKALDVPSLG-----HTSPEF-VSIFQRVLKNTRAVFKSAAAS-KSQPFVLAGSGT 67
Query: 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLD 199
++ A ++ + + V++ S L + ++ + P
Sbjct: 68 LGWDIFASNF-ILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLEL 126
Query: 200 KLKEMLSRKTKLVVIHHISNMLASILP--IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ 257
+++ V + H+ A + +VDA S+ +
Sbjct: 127 ITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFD 186
Query: 258 GLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVF-----LDHSTFA 311
DF + +S K + P G+ S + G +
Sbjct: 187 EWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENY 246
Query: 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371
+ TP + L A+ + G+ K E++ + ++L++ +
Sbjct: 247 EAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSR 306
Query: 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASL 431
PS L + V P D+ L +GV G H +G +
Sbjct: 307 YPSNM-SAHGLTAVYV--ADPPDVIAFLK-SHGVVIAGGIHK------DIGPKYIRIGHM 356
Query: 432 HFYNTKEDVDEFIHALNE 449
+++ + +
Sbjct: 357 GVTACNKNLPYMKNCFDL 374
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (274), Expect = 3e-27
Identities = 49/380 (12%), Positives = 107/380 (28%), Gaps = 31/380 (8%)
Query: 77 SQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTK 136
S P ++ A I +S + ++ + + +V +
Sbjct: 28 SNLPPRIMAAGGLQM----------IGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISG 77
Query: 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESP 196
+ A+ L N+ + L A + +
Sbjct: 78 SGHCALEAA-----LVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYT 132
Query: 197 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV 256
+ + + K L+ + H + + P++ H +LVD+ S+ + +
Sbjct: 133 LQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYM 192
Query: 257 QGLDADFLVASS-HKMCGPTGIGFLFGKSDLLSAMPP--FLGGGEMISDVFLDHSTFADP 313
D L + S + P G + M + +L + D
Sbjct: 193 DRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 252
Query: 314 PSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373
R T + L ++ ++ G++ E A YL+ L ++
Sbjct: 253 QPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVK--- 309
Query: 374 SEHVQRAALCSFNV-ENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS-L 431
++ + + V DI + + + + G + R L
Sbjct: 310 DPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTG--------KVLRIGLL 361
Query: 432 HFYNTKEDVDEFIHALNETV 451
T+E+VD AL +
Sbjct: 362 GCNATRENVDRVTEALRAAL 381
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Score = 109 bits (273), Expect = 3e-27
Identities = 51/373 (13%), Positives = 98/373 (26%), Gaps = 29/373 (7%)
Query: 80 PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV-FTKNA 138
V +A+ + E R+++ A AS+ V +
Sbjct: 12 SRTVKEAMLFDS----------CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSG 61
Query: 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDL 198
+ A+ V S L D+V++ + A + +
Sbjct: 62 SYAVEAVLGSA----LGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQA 117
Query: 199 DKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQG 258
+ + H + PI+E+ +H G +VDA S + +D+
Sbjct: 118 IDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAA 177
Query: 259 LDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRF 317
L D+L++S++K G G F+ + L+A + RF
Sbjct: 178 LHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRF 237
Query: 318 EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHV 377
T + A+ L+ G + + +
Sbjct: 238 ---TSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSP 294
Query: 378 QRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTK 437
A S ++ L +Q G G R
Sbjct: 295 IITAFYSPEDPQYRFSEFYRRLKEQ-GFVIYPGKVSQSD---------CFRIGNIGEVYA 344
Query: 438 EDVDEFIHALNET 450
D+ + A+
Sbjct: 345 ADITALLTAIRTA 357
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Score = 107 bits (266), Expect = 9e-26
Identities = 49/401 (12%), Positives = 95/401 (23%), Gaps = 84/401 (20%)
Query: 116 ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQ 175
A K A NA + F + N S + + +GD V+ H S
Sbjct: 71 AEKHAARVYNAD---KTYFVLGGSSNANNTVTS---ALVSNGDLVLFDRNNHKSVYNSAL 124
Query: 176 LVAQKTGANLKFLNLNDD------ESPDLD-----------KLKEMLSRKTKLVVIHHIS 218
+A N N D D + ++ + + +
Sbjct: 125 AMAGG-RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG 183
Query: 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD-------------ADFLV 265
+I E+V + + D+ + + +V
Sbjct: 184 TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVV 243
Query: 266 ASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIG 325
S HK K D + DH F + + F + +P
Sbjct: 244 QSVHKQQAGFSQTSQIHKKDSHIKGQLR----------YCDHKHFNNSFNLFMSTSPFYP 293
Query: 326 EAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY-------GPKPSEHVQ 378
L +K+ + + L+ ++ G K +
Sbjct: 294 MYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDT 353
Query: 379 RAALCSFNVENIHP----------------TDIATLLDQQYGVATRSGHHC-----AQPL 417
+ + D + G+ +G + A +
Sbjct: 354 EDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIV 413
Query: 418 HRYL---GVNA------SARASLHFYNTKEDVDEFIHALNE 449
YL G+ S + T ++ I L +
Sbjct: 414 ANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQ 454
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 97.6 bits (241), Expect = 6e-23
Identities = 63/381 (16%), Positives = 125/381 (32%), Gaps = 40/381 (10%)
Query: 82 AVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATE 140
+AL + + Y + K ++ ++ F+ T A E
Sbjct: 17 EARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGARE 73
Query: 141 AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDK 200
A V +S K V++ H+S+ V + K + +P+
Sbjct: 74 AKFAVMHSL----AKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFA 129
Query: 201 LKEMLSR---KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ 257
++ + L +I + ++ +++I + +LV+ ++ M V ++
Sbjct: 130 QTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLK 189
Query: 258 GLDADFLVASSHKMCGPTG-IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316
+ ADF+V S HK +G IG + K E V + +
Sbjct: 190 EIGADFIVGSGHKSMAASGPIGVMGMKE-------------EWAEIVLRRSEKYKNKEVE 236
Query: 317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH 376
T I L A+ + K E+E A+ + + I+ G P H
Sbjct: 237 LLGCTARGATIITLMASFPH--VRERIKRWDEEVEKARRFAAEMEKLG-IKQLGDNPHNH 293
Query: 377 VQRAALCSFNVENIHPTDIATL--LDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY 434
L F+ E ++ Y H +P G+ + S +
Sbjct: 294 ----DLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKP-----GLTRYFKLS-TYG 343
Query: 435 NTKEDVDEFIHALNETVSFFN 455
+ E+VD ++A E + ++
Sbjct: 344 LSDEEVDYVLNAFKEIIEKYS 364
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 91.8 bits (227), Expect = 1e-20
Identities = 53/433 (12%), Positives = 108/433 (24%), Gaps = 58/433 (13%)
Query: 55 FPILHQEVY--GSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDE 112
F I++ E+Y G+ + L + V K + + N N I +
Sbjct: 41 FQIINDELYLDGNARQ-NLATFCQTWDDENVHKLMD---LSINKNW---IDKEEYPQSAA 93
Query: 113 YE-LARKKVAAFINASDSGEI----VFTKNATEAINLV----AYSWGLSNLKSGDEVILT 163
+ VA +A T ++EA L + W +G
Sbjct: 94 IDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKP 153
Query: 164 VAEHHSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLA 222
+ W A+ L+ + + D ++ E T VV
Sbjct: 154 NLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTG 213
Query: 223 SILPIE------EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD-------ADFLVASSH 269
+ + + + + +DA + + AS H
Sbjct: 214 NYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGH 273
Query: 270 K-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAI 328
K P G G++ + + F + + G+ I
Sbjct: 274 KFGLAPLGCGWVIWRDEEALPQELV----------FNVDYLGGQIGTFAINFSRPAGQVI 323
Query: 329 GLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV- 387
L G K+ ++A YL + + + + F +
Sbjct: 324 AQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDE--GIPAVCFKLK 381
Query: 388 ----ENIHPTDIATLLDQQYGVATRSGHHC-AQPLHRYLGVNASARASLHFYNTKEDVDE 442
D++ L + G A L R + +
Sbjct: 382 DGEDPGYTLYDLSERLRLR-------GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAEL 434
Query: 443 FIHALNETVSFFN 455
+ ++ + +
Sbjct: 435 LLEDYKASLKYLS 447
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.8 bits (206), Expect = 5e-18
Identities = 42/370 (11%), Positives = 84/370 (22%), Gaps = 53/370 (14%)
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
L V AT + + +I + S
Sbjct: 96 TNSLVLN-VIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF 154
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKE----MLSRKTKLVVIHHISNMLASILPI 227
A ++ + D+ DL ++ + + +
Sbjct: 155 KSMVT-AGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRL 213
Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL------DADFLVASSHK--MCGPTGIGF 279
EE+ + +V+ + D V S K M G
Sbjct: 214 EELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAII 273
Query: 280 LFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST 339
+ + G S + + + L
Sbjct: 274 AGFNEPFIQDISKMYPGRASASPS------------------------LDVLITLLSLGC 309
Query: 340 IGMQKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSEHVQRAALCSFNVENIHPTDIATL 398
G +K+ E+ YL L + + + A+ ++ H + L
Sbjct: 310 SGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQL 369
Query: 399 LDQ--QYGVATRSGHHCAQPL----HRYLGVNASA--------RASLHFYNTKEDVDEFI 444
V+ H + G + A A+ +DVD FI
Sbjct: 370 GSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFI 429
Query: 445 HALNETVSFF 454
L++ ++
Sbjct: 430 KRLDKCLNIV 439
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 82.3 bits (202), Expect = 2e-17
Identities = 47/365 (12%), Positives = 98/365 (26%), Gaps = 47/365 (12%)
Query: 101 GIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEV 160
++ A+ Y L K + +F + +++ + V
Sbjct: 100 DPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVV 159
Query: 161 ILTVAEHHSAIVPWQLVAQKTGANLKFLNL---NDDESPDLDKLKEMLSR-----KTKLV 212
I A H S I G N++ + D ++ ++ + + V
Sbjct: 160 IYPYASHKSPIK----AVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCV 215
Query: 213 VIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV-----PHMVVDVQGLDADFLVAS 267
+ + I EI + +++ ++ + D +V+S
Sbjct: 216 LSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSS 275
Query: 268 SHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGE 326
S K + P G G ++ + F S G +
Sbjct: 276 SDKNLLTPIGGGLVYST-----------------------DAEFIKEISLSYPGRASATP 312
Query: 327 AIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN 386
+ ++ + + ++ + K L E L + E + S
Sbjct: 313 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESP----IASCI 368
Query: 387 VENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASA--RASLHFYNTKEDVDEFI 444
N P +IA L R + YLG + ED+ +
Sbjct: 369 SVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSV 428
Query: 445 HALNE 449
L +
Sbjct: 429 SKLEK 433
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 74.2 bits (180), Expect = 3e-15
Identities = 37/370 (10%), Positives = 86/370 (23%), Gaps = 47/370 (12%)
Query: 82 AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141
+L + A + + + D+ ++ F T+
Sbjct: 15 KILDLMARDNM---------TQHAGYGQDSHCAKAARLIGELLERPDA-DVHFISGGTQT 64
Query: 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKL 201
+ + ++ H + + T D L +
Sbjct: 65 NLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHEN 124
Query: 202 KEMLSRKTKLVVIHHISN--MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGL 259
+ KLV I + + + +E+I + G + +D + + V L
Sbjct: 125 RSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL 184
Query: 260 DADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEA 319
+ + + D +
Sbjct: 185 TLADIARLTDMFYIGATKAGGMFG---------------EALIILNDALKPNARHLIKQR 229
Query: 320 GTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQR 379
G + + ++ A+ ++A + L IR+ P S +
Sbjct: 230 GALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAI-LKAGLEACGIRLAWPSASNQL-- 286
Query: 380 AALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439
+EN ++ D Y V C R + +++
Sbjct: 287 ----FPILENTMIAELNNDFDM-YTVEPLKDGTCI------------MRLCTSWATEEKE 329
Query: 440 VDEFIHALNE 449
F+ L
Sbjct: 330 CHRFVEVLKR 339
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} Length = 437 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Score = 64.1 bits (155), Expect = 1e-11
Identities = 58/299 (19%), Positives = 103/299 (34%), Gaps = 35/299 (11%)
Query: 167 HHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226
H + + GA L L L +P + +E+ V+ N L ++
Sbjct: 160 HPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPEVGEEVG------AVVVQNPNFLGALED 213
Query: 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIG-----FLF 281
+ +H GA + A ++ AD V + P G G FL
Sbjct: 214 LGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLA 273
Query: 282 GKSDLLSAMPPFLG------GGEMISDVFLDHSTFADPPSRFE--AGTPAIGEAIGLGAA 333
K + +P L G + L ++ + T A A+
Sbjct: 274 TKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMY 333
Query: 334 IDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-NIHP 392
+ L G++++ +E+A L+ LL +P +R + PKP + F + P
Sbjct: 334 LAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFN-------EFALALPKDP 386
Query: 393 TDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451
+ L ++ G H A P+ R G N + + + +ED+ AL E +
Sbjct: 387 EAVRRALAER-------GFHGATPVPREYGENLAL-FAATELHEEEDLLALREALKEVL 437
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 60.2 bits (145), Expect = 2e-10
Identities = 40/303 (13%), Positives = 79/303 (26%), Gaps = 28/303 (9%)
Query: 160 VILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTK------LVV 213
V + HS++ L+ G LK + + + L+E L R VV
Sbjct: 184 VAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVV 240
Query: 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-----VQGLD-ADFLVAS 267
+ S + E+ H+ + VDA + + + G++ AD +
Sbjct: 241 ATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFN 300
Query: 268 SHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEA 327
HK F + S ++ +
Sbjct: 301 PHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSH-QGSGLITDYRHWQLPLGRRFRS 359
Query: 328 IGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV 387
+ + G+Q ++L+ +L P + L F +
Sbjct: 360 LKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTL------GLVCFRL 413
Query: 388 ENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447
+ + LL++ + + H R G A V +
Sbjct: 414 KGSDGLN-EALLER---INSARKIHLVPCRLR--GQFVLRFAICSRKVESGHVRLAWEHI 467
Query: 448 NET 450
Sbjct: 468 RGL 470
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 52.6 bits (125), Expect = 4e-08
Identities = 36/311 (11%), Positives = 86/311 (27%), Gaps = 50/311 (16%)
Query: 114 ELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
E + + ++ + V + AI + LK + +
Sbjct: 53 EKVNEYGLKHLGGDENDKCVGFNRTSSAILAT-----ILALKPKKVIHYLPELPGHPSIE 107
Query: 174 WQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNM-LASILPIEEIVH 232
N K+ + + ++ + + T +++ ++ + + +++++
Sbjct: 108 RSCKI----VNAKYFESDK-----VGEILNKIDKDTLVIITGSTMDLKVIELENFKKVIN 158
Query: 233 WSHDVGAKVLVDACQSVPHMVVDVQG----LDADFLVASSHKMCGPTGIGFLFGKSDLLS 288
+ + A V VD ++ Q L AD +V S+ K+ G L GK +L+
Sbjct: 159 TAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVD 218
Query: 289 AMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAY 348
+ G+ A+ + ++K
Sbjct: 219 KIYIEG---------------------TKFGLEAQPPLLAGIYRALKNFNLERIRKAFER 257
Query: 349 EMELAKYLYENLLSIPNI--RIYGPKPSEHVQRA------ALCSFNVENIHPTDIATLLD 400
E L + N++ +I L
Sbjct: 258 AKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKK--LIEIGFNLL 315
Query: 401 QQYGVATRSGH 411
+ YG+ T +
Sbjct: 316 KNYGIITITVA 326
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 49.4 bits (116), Expect = 4e-07
Identities = 36/367 (9%), Positives = 79/367 (21%), Gaps = 44/367 (11%)
Query: 82 AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141
V +AL + + ++K E+ T A
Sbjct: 18 EVAQALVKHSSGQAGP---------YGTDELTAQVKRKFCEIFERDV--EVFLVPTGTAA 66
Query: 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKL 201
L + + A H + GA L ++ + +
Sbjct: 67 NALCLSAM----TPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLR 122
Query: 202 KEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDA 261
+ + + + + I + + HM
Sbjct: 123 ERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANAL 182
Query: 262 D-FLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG 320
+ + FG + ++ + + R
Sbjct: 183 VSLGCSPAEMTWKAGVDALSFGATKNGVLAA-----EAIVLFNTSLATEMSYRRKRAGHL 237
Query: 321 TPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA 380
+ + YL+ + A+ L + L + + + G + +
Sbjct: 238 SSKMRFLSA--QIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANIL--- 292
Query: 381 ALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440
+ I LL +G R F T EDV
Sbjct: 293 ------FCRLDSAMIDALLKAGFGFYHDRWGP------------NVVRFVTSFATTAEDV 334
Query: 441 DEFIHAL 447
D ++ +
Sbjct: 335 DHLLNQV 341
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 45/359 (12%), Positives = 86/359 (23%), Gaps = 33/359 (9%)
Query: 108 KATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEH 167
E E + V +AT +++ + G+ GDEVI
Sbjct: 31 PKNQELE---AAFCRLTGNQYA---VAVSSATAGMHIALMALGI---GEGDEVI---TPS 78
Query: 168 HSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
+ + ++ + D + ++ ++ +TK ++ H + A +
Sbjct: 79 MTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPA---DL 135
Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK----MCGPTGIGFLFGK 283
+ I G V+ DA + + S H C GI
Sbjct: 136 DAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNP 195
Query: 284 SDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQ 343
G + + + + A +
Sbjct: 196 QFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALN 255
Query: 344 KIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQY 403
A +L P I + L +
Sbjct: 256 ARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASL-KTK 314
Query: 404 GVATRSGHHCA--QPLHRYLGVNASARAS-----------LHFYNTKEDVDEFIHALNE 449
G+ T A Q +R + + L T+ D D I AL++
Sbjct: 315 GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQ 373
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 46.7 bits (110), Expect = 3e-06
Identities = 59/389 (15%), Positives = 128/389 (32%), Gaps = 66/389 (16%)
Query: 80 PIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEY--ELARKKVAAFINASDSGEIVFTKN 137
P +++A + A R + A +A+K + I+ T
Sbjct: 45 PKHIVEAAK---AALEQGKTR---YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNG 98
Query: 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE-SP 196
++I + + ++ GDEVI+ S ++V G + + +
Sbjct: 99 GKQSIFNLMLAM----IEPGDEVIIPAPFWVSY---PEMVKLAEGTPVILPTTVETQFKV 151
Query: 197 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEE------------IVHWSHDVGAKVLVD 244
+++++ ++ KTKL+V + SN + +E + S ++ K+L D
Sbjct: 152 SPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD 211
Query: 245 ACQSVPHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISD 302
Q + + + + + K TG +GFL G L+ A G
Sbjct: 212 DAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVC 271
Query: 303 VFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362
F + A + + +Q++ A E +Y+ + L +
Sbjct: 272 TFAQYGAIAAYENSQDC----------------------VQEMLAAFAERRRYMLDALNA 309
Query: 363 IPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLG 422
+P + P + ++ S D + L Q+ VAT G +
Sbjct: 310 MPGLECPKPDGAFYM----FPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGAD--DCIR 363
Query: 423 VNASARASLHFYNTKEDVDEFIHALNETV 451
++ + + + + L + +
Sbjct: 364 LS--------YATDLDTIKRGMERLEKFL 384
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 44.8 bits (105), Expect = 1e-05
Identities = 47/377 (12%), Positives = 108/377 (28%), Gaps = 56/377 (14%)
Query: 92 EAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGL 151
E + +G+ R+ +A + + E +
Sbjct: 45 EYAKEALDKGLTHYGP--NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMG 102
Query: 152 SN--LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL--NDDESPDLDKLKEMLSR 207
+ LK G+EV++ A V + G + D+ ++D+LK+ ++
Sbjct: 103 LSAFLKDGEEVLIP----TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD 158
Query: 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDA--------CQSVPHMVVDV 256
KT+ ++I+ N ++L +EEI + + V+ D +
Sbjct: 159 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLD 218
Query: 257 QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPP 314
+ V K TG +GF+ S ++ M F F+ ++
Sbjct: 219 GMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAA---- 274
Query: 315 SRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374
+ + E + + + + KP
Sbjct: 275 -------------------KALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPK 315
Query: 375 EHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY 434
+ + L+ ++ VA G + Y+ ++ +
Sbjct: 316 GAF--YIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRIS--------YA 365
Query: 435 NTKEDVDEFIHALNETV 451
E ++E + + +
Sbjct: 366 TAYEKLEEAMDRMERVL 382
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Score = 43.0 bits (100), Expect = 6e-05
Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 32/302 (10%)
Query: 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR 207
++ + + ++ I H++++ A + + L+ ND L +L
Sbjct: 112 QAVIAAMMAKEDRIAADRLSHASLLEA---ASLSPSQLRRFAHNDVT--HLARLLASPCP 166
Query: 208 KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAS 267
++VV + +M P+ EI + ++VD + +G V
Sbjct: 167 GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKP 226
Query: 268 SHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEA 327
+ + G ++ + + + +A
Sbjct: 227 ELLVVTF--------------GKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQA 272
Query: 328 IGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV 387
L A++ + + L + +P + +
Sbjct: 273 QALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPL-------IVG 325
Query: 388 ENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447
+N +A L +Q G + P A R +L + +D+D + L
Sbjct: 326 DNSRALQLAEKL-RQQGCWVTAIRPPTVPAGT-----ARLRLTLTAAHEMQDIDRLLEVL 379
Query: 448 NE 449
+
Sbjct: 380 HG 381
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 40.7 bits (94), Expect = 3e-04
Identities = 42/348 (12%), Positives = 87/348 (25%), Gaps = 31/348 (8%)
Query: 132 IVFTKNATEAINL---VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL-----VAQKTGA 183
I+ A N+ V + K+ + V ++ + +L + T
Sbjct: 93 IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK 152
Query: 184 NLKFLNLN-DDESPDLDKLKEMLSRKTKLVVIHHISNML--------ASILPIEEIVHWS 234
+ D+ KLKE +++ ++ +S + S+ ++E+ +
Sbjct: 153 AFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA 212
Query: 235 HDVGAKVLVDACQSVPHMVVDVQGLDADFL--VASSHKMCGPTGIGFLFGKSDLLSAMPP 292
G V++D+ + + +
Sbjct: 213 KQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG 272
Query: 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352
L ++F P E G A AA+ G ++ + +
Sbjct: 273 GLVAIRDNEEIFTLARQRCVP---MEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIG 329
Query: 353 AKYLYENLLSIPNIRIYGPKPSEHV---QRAALCSFNVENIHPTDIATLLDQQYGVATRS 409
+ L I I P V + + + + L + GV
Sbjct: 330 QVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVE 389
Query: 410 GHHCAQPLHRYLGVNASARASL------HFYNTKEDVDEFIHALNETV 451
G A T + +D AL
Sbjct: 390 IGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLK 437
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 38.6 bits (89), Expect = 0.001
Identities = 51/376 (13%), Positives = 113/376 (30%), Gaps = 40/376 (10%)
Query: 82 AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEA 141
++ A + +++ D ++ +K+AAF+ E ++
Sbjct: 63 DLIAAAKAGMDSHG--FGMASVRFICGTQDSHKELEQKLAAFLGM----EDAILYSSCFD 116
Query: 142 INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKL 201
N L ++ I++ A +H++I+ V ++ N + E K
Sbjct: 117 AN----GGLFETLLGAEDAIISDALNHASIIDG--VRLCKAKRYRYANNDMQELEARLKE 170
Query: 202 KEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDA 261
+ L+ + +M I ++ + + A V+VD +V + + +G
Sbjct: 171 AREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHE 230
Query: 262 DFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAG- 320
V + T L G GG ++ P F
Sbjct: 231 YCDVMGRVDIITGTLGKALGG----------ASGGYTAARKEVVEWLRQRSRPYLFSNSL 280
Query: 321 TPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA 380
PAI A + + ++ A + + + ++ ++H
Sbjct: 281 APAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLA--------GADHAIIP 332
Query: 381 ALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440
+ + + A L Q+ G+ + P + A R + +T E +
Sbjct: 333 VMLG---DAVVAQKFAREL-QKEGIYVTGFFYPVVPKGQ-----ARIRTQMSAAHTPEQI 383
Query: 441 DEFIHALNETVSFFNV 456
+ A V
Sbjct: 384 TRAVEAFTRIGKQLGV 399
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 38.1 bits (88), Expect = 0.002
Identities = 43/350 (12%), Positives = 90/350 (25%), Gaps = 52/350 (14%)
Query: 117 RKKVAAFINA-SDSGEIVFTKNATEAINLVAYS----WGLSNLKSGDEVILTVAEHHSAI 171
++ NA + IVF T+ I+ + S + +V+
Sbjct: 110 KELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAH----APFY 165
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
++ + + + + + + ++ +N +
Sbjct: 166 PVFREQTKYFDKKGYVWAG------NAANYVNVSNPEQYIEMVTSPNNPEGL-------L 212
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSA 289
+ G K + D PH D D L+ + K G +G G+ K + +
Sbjct: 213 RHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYN 272
Query: 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349
++ +T P + E + +
Sbjct: 273 N----------LLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKL 322
Query: 350 MELAKYLYENLLSIPNIRIYGPKPSE--------HVQRAALCSFNVENIHPTDIATLLDQ 401
E + L SE + E D
Sbjct: 323 RERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQN 382
Query: 402 QYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451
+ T++G RY+ R S T++D D+ ++ L + V
Sbjct: 383 G-RINTQNGVGFE-ASSRYV------RLS--LIKTQDDFDQLMYYLKDMV 422
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 37.8 bits (87), Expect = 0.002
Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 16/173 (9%)
Query: 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF 187
E + T ++A+ + + L GDEVI V + P +
Sbjct: 90 TPEETIVTVGGSQALFNLFQAI----LDPGDEVI--VLSPYWVSYPEMVRFAGGVVVEVE 143
Query: 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVD 244
+ PD ++++ ++ +TK +V++ +N ++ P +E + + + ++ D
Sbjct: 144 TLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSD 203
Query: 245 ACQSV-----PHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAM 290
H + V + K TG IG+ G +++ AM
Sbjct: 204 EIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAM 256
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Score = 36.9 bits (84), Expect = 0.004
Identities = 44/244 (18%), Positives = 79/244 (32%), Gaps = 24/244 (9%)
Query: 206 SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLV 265
KL+ + +M PI+EI + + GA +D +V G+ +
Sbjct: 175 PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL 234
Query: 266 ASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIG 325
+ T L+ GG S +D P F P
Sbjct: 235 MHRIDIFNGT-----------LAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLP-PA 282
Query: 326 EAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSF 385
A G A+I +L T QK+ + AK L L + + H+ +
Sbjct: 283 IAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRL---KALGMPIIDHGSHIVPVVIG-- 337
Query: 386 NVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445
+ +H ++ +L YGV + + P R + + + +D +H
Sbjct: 338 --DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGT-----ERLRFTPSPVHDLKQIDGLVH 390
Query: 446 ALNE 449
A++
Sbjct: 391 AMDL 394
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.98 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.98 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.97 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.97 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.97 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.97 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.97 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.97 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.97 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.97 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.97 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.97 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.97 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.97 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.96 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.96 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.95 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.95 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.95 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.95 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.95 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.94 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.93 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.93 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.92 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.92 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.92 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.92 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.92 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.91 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.91 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.91 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.91 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.91 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.91 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.9 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.9 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.9 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.9 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.9 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.9 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.9 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.89 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.89 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.89 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.87 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.87 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.87 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.87 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.87 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.86 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.85 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.85 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.83 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.83 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.83 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.82 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.82 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.8 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.77 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.76 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.75 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.75 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.74 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.71 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.7 |
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=1.3e-58 Score=450.67 Aligned_cols=406 Identities=63% Similarity=1.027 Sum_probs=368.6
Q ss_pred chhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC
Q 012718 46 SLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN 125 (458)
Q Consensus 46 ~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g 125 (458)
++++.+|++||.+.+..+ ++++||||+++.+++|+.+++++.++++..+.|++++.+..+....+.++++|+.+|+++|
T Consensus 2 ~~~a~iR~~FP~l~~~~~-~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg 80 (408)
T d1t3ia_ 2 SLAATVRQDFPILNQEIN-GHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN 80 (408)
T ss_dssp CHHHHHGGGCGGGSCEET-TEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHhCcccccccC-CCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 456789999999976544 5678999999999999999999999999988888888888888888999999999999999
Q ss_pred CCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhh
Q 012718 126 ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML 205 (458)
Q Consensus 126 ~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l 205 (458)
+++++.+++++++|+++++++.++....+++|++|++++.+|+++..+|...+++.|++++.+|.+.++..+.+.+++.+
T Consensus 81 a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~ 160 (408)
T d1t3ia_ 81 ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL 160 (408)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC
T ss_pred CCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhcc
Confidence 98766899999999999999877432247899999999999999999999999999999999999989999999999999
Q ss_pred cCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEecc
Q 012718 206 SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSD 285 (458)
Q Consensus 206 ~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~ 285 (458)
++++++|++++.+|.||.+.|+++|.++||++|+++++|++|++|..++|+.++++|++++|+||++||.|+|+++++++
T Consensus 161 ~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~ 240 (408)
T d1t3ia_ 161 SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE 240 (408)
T ss_dssp CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHH
T ss_pred CCCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccCCceEEeccccccCCCCccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPN 365 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~ 365 (458)
....+++...||............+...+.+|+.||+++..++++..+++++.+.|++++.++..++.+++.+.+.+.++
T Consensus 241 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~ 320 (408)
T d1t3ia_ 241 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQ 320 (408)
T ss_dssp HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred hhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCcc
Confidence 98888888888877665555555667778899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHH
Q 012718 366 IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIH 445 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~ 445 (458)
+.+..+.+. ...+.++++|.+++.+..++.+.|.++ ||.++.|++|..+.+..++.++++|||+++|||.+|||++++
T Consensus 321 ~~~~~~~~~-~~~~~~iv~f~~~~~~~~~v~~~L~~~-gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~ 398 (408)
T d1t3ia_ 321 LRLYGPNPK-HGDRAALASFNVAGLHASDVATMVDQD-GIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQ 398 (408)
T ss_dssp EEEESCCGG-GSCBCSEEEEEETTBCHHHHHHHHHTT-TEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHH
T ss_pred ccccCCCcc-ccCcceEEEEEeCCCCHHHHHHHHhhC-CcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHH
Confidence 999876542 135678999999999999999999887 999999999999988888889999999999999999999999
Q ss_pred HHHHHHHhh
Q 012718 446 ALNETVSFF 454 (458)
Q Consensus 446 ~l~~~~~~~ 454 (458)
.|+++++.+
T Consensus 399 ~L~~~~~~f 407 (408)
T d1t3ia_ 399 SLQATIRFF 407 (408)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999865
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-58 Score=449.08 Aligned_cols=399 Identities=46% Similarity=0.805 Sum_probs=362.5
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 128 (458)
+.+|++||.+....+ +++++|||+++.+++|+.+.+++.+++++.+.|++++.+..+....+.++++|+.+|+++|+.+
T Consensus 5 ~~vR~~FP~l~~~~~-~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~ 83 (405)
T d1jf9a_ 5 DKVRADFPVLSREVN-GLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS 83 (405)
T ss_dssp HHHHHTCGGGGCEET-TEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHhChhcccCcC-CCCeEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 557889999965544 4678999999999999999999999999988899888888888888999999999999999876
Q ss_pred CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC
Q 012718 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK 208 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 208 (458)
+++++|++|+|++++.++.++....+.+|+.|++++.+|+++..+|..++++.|++++.+|++++|.+|++.++++++++
T Consensus 84 ~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~~ 163 (405)
T d1jf9a_ 84 AEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEK 163 (405)
T ss_dssp GGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTT
T ss_pred cccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccCC
Confidence 56999999999999999887322247899999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccc
Q 012718 209 TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLS 288 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~ 288 (458)
|++|++++++|.||.+.|+++|.++||++|+++++|++|+.|..++++.++++|++++|+|||+||.|+|+++++++.++
T Consensus 164 t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~~~~ 243 (405)
T d1jf9a_ 164 TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQ 243 (405)
T ss_dssp EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHHHHT
T ss_pred cEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCCceeeeechhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCccccCcceEeeecC-CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Q 012718 289 AMPPFLGGGEMISDVFLD-HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR 367 (458)
Q Consensus 289 ~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~ 367 (458)
.+.+...++......... ...+...+.+|+.||+++..++++..+++++.+.|++.+.++...+.+++.+.++..+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~ 323 (405)
T d1jf9a_ 244 EMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLT 323 (405)
T ss_dssp TCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred ccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCccc
Confidence 888887777766554333 2445677889999999999999999999999999999999999999999999999998888
Q ss_pred EeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHH
Q 012718 368 IYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 447 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l 447 (458)
+..+. .++++++|.+++.+..++...|.+. ||.++.|++|+.+....++.++++|||+++|||.+|||+++++|
T Consensus 324 ~~~~~-----~r~~ivsf~~~~~~~~~~~~~L~~~-gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l 397 (405)
T d1jf9a_ 324 LYGPQ-----NRLGVIAFNLGKHHAYDVGSFLDNY-GIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGL 397 (405)
T ss_dssp EESCT-----TCCSEEEEEETTCCHHHHHHHHHHT-TEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCc-----CcCcEEEEEcCCCCHHHHHHHHHHC-CcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 88765 4488999999998899999999877 99999999999998888888999999999999999999999999
Q ss_pred HHHHHhh
Q 012718 448 NETVSFF 454 (458)
Q Consensus 448 ~~~~~~~ 454 (458)
+++++-+
T Consensus 398 ~~i~r~~ 404 (405)
T d1jf9a_ 398 QRIHRLL 404 (405)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988743
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=4.2e-48 Score=373.95 Aligned_cols=369 Identities=24% Similarity=0.361 Sum_probs=314.5
Q ss_pred CCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 012718 54 DFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIV 133 (458)
Q Consensus 54 ~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~ 133 (458)
+||.+ ++.+|||+++.+++|+.+.+++.+++.....+... ....+....+.++++|+.+|+++|++++ +|+
T Consensus 1 ~fp~l-------~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~-~i~ 71 (381)
T d1elua_ 1 QFPGL-------ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPF-SIAANQHIQQLIAQLRQALAETFNVDPN-TIT 71 (381)
T ss_dssp CCGGG-------TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHHHHHHTTSCGG-GEE
T ss_pred CCCCC-------CCCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCc-cchhhHHHHHHHHHHHHHHHHHhCCCcc-cEE
Confidence 58888 67899999999999999999999998876555432 2333445667788999999999999876 899
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCC--CCHHHHHHhhcCCceE
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDES--PDLDKLKEMLSRKTKL 211 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~--~d~~~l~~~l~~~~~~ 211 (458)
||+|+|+++++++.++ .+++|++|++++.+|+++..+|..++++.|++++.+|.+.+.. .+.+.+++.+++++++
T Consensus 72 ~~~g~t~a~~~~~~~l---~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~ 148 (381)
T d1elua_ 72 ITDNVTTGCDIVLWGL---DWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRL 148 (381)
T ss_dssp EESSHHHHHHHHHHHS---CCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEE
T ss_pred EECChHHHhhhcchhh---hhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccc
Confidence 9999999999999998 4789999999999999999999999999999999999875433 2356788888999999
Q ss_pred EEEecccCcCcccccHHHHHHHHHhc----CcEEEEeccccCCcccCCCCCCCCcEEEecccCCC-CCCceeEEEEeccc
Q 012718 212 VVIHHISNMLASILPIEEIVHWSHDV----GAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDL 286 (458)
Q Consensus 212 v~~~~~~n~tG~~~~l~~i~~l~~~~----~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~~~ 286 (458)
+++++++|+||.+.|+++|.++||++ ++++++|++|+.|..++++.++++|++++|+||++ +|.|+|+++++++.
T Consensus 149 v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~ 228 (381)
T d1elua_ 149 VILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDC 228 (381)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTT
T ss_pred cccccccccccccchhhHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccchhhHHHhhHHH
Confidence 99999999999999999999999984 69999999999999999999999999999999954 58999999999999
Q ss_pred cccCCCccccCcceEeeec-CCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHhcCC
Q 012718 287 LSAMPPFLGGGEMISDVFL-DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM-QKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 287 ~~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~-~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
.+.+.+...||........ ....+.....+++.||++...++++.++++.+...|. +...++..++.+++.+.|++++
T Consensus 229 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~ 308 (381)
T d1elua_ 229 LGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLP 308 (381)
T ss_dssp GGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCC
Confidence 9999888877765543222 2234455667889999999999999999999998875 4556889999999999999999
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCCC-ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVENI-HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEF 443 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l 443 (458)
+++++.+.. .++++++|.+++. ..+++.+.|.++ ||.++. .+.++++|+|++.|||.+|||++
T Consensus 309 ~~~~~~~~~----~~~~~vsf~~~~~~~~~~i~~~L~~~-gi~v~~-----------~~~~~~lRis~~~~nt~edid~l 372 (381)
T d1elua_ 309 HVHCLATSA----PQAGLVSFTVDSPLGHRAIVQKLEEQ-RIYLRT-----------IADPDCIRACCHYITDEEEINHL 372 (381)
T ss_dssp TEEESCSSC----CSSSEEEEEECSSSCHHHHHHHHHHT-TEECEE-----------ETTTTEEEEECCTTCCHHHHHHH
T ss_pred CeEecCCCC----ccccEEEEEcCCCCCHHHHHHHHHhC-CcEEEe-----------cCCCCEEEEecCCCCCHHHHHHH
Confidence 999987653 3578999999864 457788999988 998863 23378999999999999999999
Q ss_pred HHHHHHH
Q 012718 444 IHALNET 450 (458)
Q Consensus 444 ~~~l~~~ 450 (458)
++.|+++
T Consensus 373 l~~l~e~ 379 (381)
T d1elua_ 373 LARLADF 379 (381)
T ss_dssp HHHHTTC
T ss_pred HHHHHhh
Confidence 9998764
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-46 Score=360.80 Aligned_cols=367 Identities=24% Similarity=0.345 Sum_probs=310.0
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHh--ccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAY--NSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
.||||+++.+|.++.+.+++.+++... ++|+++..+..+....+.++++|+.+|+++|++++ +|+||+|+|++++.+
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~-~I~~~~~~t~~l~~~ 81 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFTSGATESDNLA 81 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEESSHHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC-cEEEECCHHHHHHHH
Confidence 489999999999999999999987643 45676666777777888899999999999999986 999999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASIL 225 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~ 225 (458)
+.++....+++||.|++++++|+++...+.. ++..|++++.++.+.++.+|+++++++++++|++|++++++|+||.+.
T Consensus 82 ~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~ 160 (391)
T d1p3wa_ 82 IKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQ 160 (391)
T ss_dssp HHHHHHHHGGGCCEEEEETTSCHHHHHHHHH-HHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBC
T ss_pred HhhhhhhhcCCCCEEEEeccccchHHHHHHH-HHHcCCEEEEeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeEC
Confidence 8875322257999999999999998766654 566799999999998899999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeec
Q 012718 226 PIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL 305 (458)
Q Consensus 226 ~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 305 (458)
|+++|+++||++|+++++|++|+.|..++|+...++|++++|+||++||.|+|+++++++.+..+.+...||..
T Consensus 161 ~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~~~gg~~------ 234 (391)
T d1p3wa_ 161 DIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGH------ 234 (391)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCT------
T ss_pred CHHHHHHHhccCCcEEEEeeccccCCccccchhccccccccccccccCCCceEEEEEecchhcccCCcccCCcc------
Confidence 99999999999999999999999999999999999999999999999999999999999988888877766543
Q ss_pred CCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEE
Q 012718 306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSF 385 (458)
Q Consensus 306 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (458)
..++..++.+.....++..+++...+. .....++++++.+++.+.|.++++..+..... .....++.|
T Consensus 235 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~~~~~ 302 (391)
T d1p3wa_ 235 --------ERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGDLE---HGAPNILNV 302 (391)
T ss_dssp --------TTTTSCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTTTSTTEEECSCTT---TSCTTEEEE
T ss_pred --------ccCcccCcchhhhhhhhhhhhhHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCeeeccccc---ccCceEEEE
Confidence 246678899998888888888777664 55666888899999999999998877755543 233457888
Q ss_pred EeCCCChHHHHHHHhhhcCeEeccCCCCChhh------HhhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 386 NVENIHPTDIATLLDQQYGVATRSGHHCAQPL------HRYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~------~~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+++.....+...|. ++.++.|++|..+. ...+|. .++||||+++|||.+|||+++++|+++++++
T Consensus 303 ~~~~~~~~~~~~~l~---~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~l 379 (391)
T d1p3wa_ 303 SFNYVEGESLIMALK---DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL 379 (391)
T ss_dssp EETTSCHHHHHHHTT---TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCChHHHHHHhC---CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 888888888887774 78888888876543 223343 3689999999999999999999999999988
Q ss_pred hcc
Q 012718 455 NVF 457 (458)
Q Consensus 455 ~~~ 457 (458)
++.
T Consensus 380 r~~ 382 (391)
T d1p3wa_ 380 RDL 382 (391)
T ss_dssp HHS
T ss_pred HHh
Confidence 764
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.1e-43 Score=340.15 Aligned_cols=361 Identities=26% Similarity=0.394 Sum_probs=295.7
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~ 147 (458)
.||||+++.+++|+.+.+++.+++++...|++ +.+..+....+.++++|+.+|+++|++++ +|+|++|+|++++.++.
T Consensus 2 ~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~-~~~~~~~~~~~~~~~aR~~ia~l~~~~~~-~i~~~~~~T~~l~~~~~ 79 (376)
T d1eg5a_ 2 RVYFDNNATTRVDDRVLEEMIVFYREKYGNPN-SAHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFTSCATESINWILK 79 (376)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHTCCCCTT-CSSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEESCHHHHHHHHHH
T ss_pred EEEEECcccccCCHHHHHHHHHHHHHcCCCCc-cccHHHHHHHHHHHHHHHHHHHHcCCCCC-cEEEECCHHHHHHhhhh
Confidence 48999999999999999999999998888886 45666777888899999999999999876 99999999999999987
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccH
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
++......+|+.|+++...|++.... ...++..|++++.+|+++++.+|+++++++++++|++|++++++|+||...|+
T Consensus 80 ~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~ 158 (376)
T d1eg5a_ 80 TVAETFEKRKRTIITTPIEHKAVLET-MKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPV 158 (376)
T ss_dssp HHHHHTTTTCCEEEECTTSCHHHHHH-HHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCH
T ss_pred cccccccccCcccccccccchhhHHH-HHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeee
Confidence 64333467888888888777766644 45567779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh--cCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeec
Q 012718 228 EEIVHWSHD--VGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL 305 (458)
Q Consensus 228 ~~i~~l~~~--~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 305 (458)
+++.++++. .++++++|++|+.|..++++.+.++|++++|+|||+||.|+|+++++++. .+.+...||+.
T Consensus 159 ~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~--~~~p~~~g~~~------ 230 (376)
T d1eg5a_ 159 EDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQ------ 230 (376)
T ss_dssp HHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCT------
T ss_pred hhhhhhhhhcccCceeEEEeeeccccccccccccCccceecccceeecCCCceeEEeccCc--ccCCcccCCCC------
Confidence 999999865 49999999999999999999999999999999999999999999998874 46666665553
Q ss_pred CCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEE
Q 012718 306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSF 385 (458)
Q Consensus 306 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (458)
...+..|+.+.........+...... .......+...+.+++.+.|.......+ .... ..+..++.+
T Consensus 231 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~---~~~~~~~~~ 297 (376)
T d1eg5a_ 231 --------ERGLRSGTQNVPGIVGAARAMEIAVE-ELSEAAKHMEKLRSKLVSGLMNLGAHII-TPLE---ISLPNTLSV 297 (376)
T ss_dssp --------TTTTBCSCCCHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTTTCEEC-SCTT---SBCTTEEEE
T ss_pred --------cccccCCcccchhhhhHHHHhhcccc-chhhhhhhhhhhhhhhcccccccccccc-cccc---ccccceeee
Confidence 23566788888888777766665543 4667778888888999999988744443 3332 244568899
Q ss_pred EeCCCChHHHHHHHhhhcCeEeccCCCCChhhH------hhcCC-----CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 386 NVENIHPTDIATLLDQQYGVATRSGHHCAQPLH------RYLGV-----NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~------~~~g~-----~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
.+++.+...+...|.++ ||.++.|++|..+.+ ..+|. ++.||+|+++|+|.+|||++++.|+++++-
T Consensus 298 ~~~~~~~~~~~~~L~~~-gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~~ 375 (376)
T d1eg5a_ 298 SFPNIRGSTLQNLLSGY-GIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF 375 (376)
T ss_dssp ECTTCCHHHHHHHHHHT-TEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHhhC-CeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999998877 999999998876432 22343 357999999999999999999999999863
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=2.2e-42 Score=336.44 Aligned_cols=375 Identities=19% Similarity=0.217 Sum_probs=299.1
Q ss_pred hhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC
Q 012718 49 HITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128 (458)
Q Consensus 49 ~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 128 (458)
+.+|++||.. ++++|||+++.+++|+.+.+++.+++.+.+.+... ....+..+.+..+++|+.+|+++|+++
T Consensus 16 ~~~R~~F~~~-------~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~e~~R~~iA~llga~~ 87 (404)
T d1qz9a_ 16 APLRQQFALP-------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLI-RSWNSAGWRDLSERLGNRLATLIGARD 87 (404)
T ss_dssp GGGGGGBCCC-------TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGG-GHHHHTSGGGHHHHHHHHHHTTTTCCT
T ss_pred HHHHhcCCCC-------CCCEEcCCcccccCCHHHHHHHHHHHHHHhcccCc-ccccchhHHHHHHHHHHHHHHHhCCCC
Confidence 5679999975 78999999999999999999999998776555432 222233456788899999999999998
Q ss_pred CCcEEEeCChhHHHHHHHHHcCC--CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc
Q 012718 129 SGEIVFTKNATEAINLVAYSWGL--SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS 206 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~--~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~ 206 (458)
+ +++||+|+|++++.++..... ....+++.|++++.+|++....+..... ++..++.+.++..+++.++++++
T Consensus 88 ~-ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~ 162 (404)
T d1qz9a_ 88 G-EVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLA----DMLQQGYTLRLVDSPEELPQAID 162 (404)
T ss_dssp T-SEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHH----HHHCSSCEEEEESSGGGHHHHCS
T ss_pred C-cEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhh----eeeeeceeccccccchhHHHhcC
Confidence 7 899999999999887653210 0136788888988888876555544322 23333333345558889999999
Q ss_pred CCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC-CCCCc-eeEEEEec
Q 012718 207 RKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTG-IGFLFGKS 284 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-~gp~g-~G~l~~~~ 284 (458)
++|++|++++++|.||.+.|+++|+++|+++|+++++|++|+.|..++++.++++|++++|.||+ ++|+| +|+++.++
T Consensus 163 ~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~ 242 (404)
T d1qz9a_ 163 QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSP 242 (404)
T ss_dssp TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECT
T ss_pred CCceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEEechhhcccCCceEEEEEech
Confidence 99999999999999999999999999999999999999999999999999999999999999994 45555 89999999
Q ss_pred cccccCCCccccCcceEeeecC--CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH---H
Q 012718 285 DLLSAMPPFLGGGEMISDVFLD--HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYE---N 359 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~---~ 359 (458)
+..+.+.+...+++.....+.. ...+...+.+++.++++......+..++..+...+.+.+.++...+.+.+.+ .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 322 (404)
T d1qz9a_ 243 QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQ 322 (404)
T ss_dssp TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHh
Confidence 9888887666665554432222 2344566688999999999999999999999999999888887777766554 4
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC-CCCCHH
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH-FYNTKE 438 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~-~~~t~~ 438 (458)
+...++++++++... ..++++++|+++ +..++.+.|.++ ||.+... .++.||||++ .|||++
T Consensus 323 ~~~~~~~~i~~p~~~--~~r~~~vsf~~~--~~~~v~~~L~~~-gi~~~~r------------~~~~lRiS~~h~ynt~~ 385 (404)
T d1qz9a_ 323 RCAAHELTLVTPREH--AKRGSHVSFEHP--EGYAVIQALIDR-GVIGDYR------------EPRIMRFGFTPLYTTFT 385 (404)
T ss_dssp HHTTSCCEECSCSSG--GGBCSEEEEECT--THHHHHHHHHTT-TEECEEE------------TTTEEEEECCTTTCCHH
T ss_pred hccCCCEEEECCCCc--cceeeEEEEecC--CHHHHHHHHHHC-CCEEeec------------CCCeEEEECCCCCCCHH
Confidence 456689999877543 577889999987 478899999988 9976321 1578999995 689999
Q ss_pred HHHHHHHHHHHHHHh
Q 012718 439 DVDEFIHALNETVSF 453 (458)
Q Consensus 439 di~~l~~~l~~~~~~ 453 (458)
|||+++++|++++++
T Consensus 386 did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 386 EVWDAVQILGEILDR 400 (404)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999975
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-39 Score=310.58 Aligned_cols=362 Identities=16% Similarity=0.168 Sum_probs=290.8
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
.|-..++++.++.|++++... ..++++..+.+.++++++.|++++|++.++.|+|++|||++++.++.++
T Consensus 21 ~l~~pGP~~~~~~Vl~am~~~----------~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l 90 (388)
T d1h0ca_ 21 LLLGPGPSNLPPRIMAAGGLQ----------MIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNV 90 (388)
T ss_dssp EECSSSCCCCCHHHHHHHTCC----------CCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhCcC----------CCCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHh
Confidence 344456668899998887421 2345677889999999999999999987667999999999999999998
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~ 228 (458)
+.+|+++++...++++.. +...+...+..+..+..+..+.+|.+.+++.+.. +++++++++.+|.||.+.|++
T Consensus 91 ----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~ 164 (388)
T d1h0ca_ 91 ----LEPGDSFLVGANGIWGQR--AVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLD 164 (388)
T ss_dssp ----CCSSCCEEECBSSHHHHH--HHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred ----hccCCceeeecccceeee--eccccccccccccccccCCccccchHHHHHHhccCCcceEEEeeeeeccccccCHH
Confidence 789999999999998874 4555677788888888887788888888776554 889999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeee--c
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVF--L 305 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~--~ 305 (458)
+|.++|+++|+++++|++|++|..+++++++++|++++|.||+ +||.|+|+++++++.++.+.....++....... .
T Consensus 165 ~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (388)
T d1h0ca_ 165 GFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWL 244 (388)
T ss_dssp THHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHH
T ss_pred HHHHHhhcccccceeccccccccccccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchh
Confidence 9999999999999999999999999999999999999999995 568889999999987766654333222100000 0
Q ss_pred CCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEE
Q 012718 306 DHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSF 385 (458)
Q Consensus 306 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (458)
..........+++.+|++...+.++.++++++.+.|++.+.++..++.+++++.+... ++.+..+.+. .++..+++|
T Consensus 245 ~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~--~rs~~i~~~ 321 (388)
T d1h0ca_ 245 ANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPA--LRLPTVTTV 321 (388)
T ss_dssp HHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGG--GBCTTEEEE
T ss_pred hhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc-CcccccCCHH--HcCCeEEEE
Confidence 0011122345677899999999999999999999999999999999999999999887 5555444332 233458899
Q ss_pred EeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe-eCCCCCHHHHHHHHHHHHHHHHhhhccC
Q 012718 386 NVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS-LHFYNTKEDVDEFIHALNETVSFFNVFK 458 (458)
Q Consensus 386 ~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis-~~~~~t~~di~~l~~~l~~~~~~~~~~~ 458 (458)
.++ +.+..++.+.|.+++||.++.|..|.. .+.+||| +++++|.+|||+++++|+++++++++++
T Consensus 322 ~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~--------~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~~ 388 (388)
T d1h0ca_ 322 AVPAGYDWRDIVSYVIDHFDIEIMGGLGPST--------GKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKK 388 (388)
T ss_dssp ECCTTCCHHHHHHHHHHHHCEECEECCGGGT--------TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC-
T ss_pred ECCCCCCHHHHHHHHHhcCCEEEeCCchhhc--------CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 996 678899999998777999988865421 5689999 7888999999999999999999998764
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=1.6e-34 Score=278.32 Aligned_cols=335 Identities=18% Similarity=0.208 Sum_probs=249.2
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNA 138 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~v~~t~g~ 138 (458)
|.++|.|..|.+. ++|+.+.+++.+.++.... .. .......++|+++++++ |.. ..++|++|+|+
T Consensus 29 g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~---~Y------~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~ 99 (388)
T d1j32a_ 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKT---RY------GPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG 99 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCC---SC------CCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCC---CC------CCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCH
Confidence 4678999888766 6689999999988764211 01 11122335666666654 443 22489999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
++++..++.++ +++||.|++++|+|+ .+...++..|.+++.++...+ +.+|++++++.++++++++++++
T Consensus 100 ~~al~~~~~~~----~~~gd~Vlv~~P~y~----~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~ 171 (388)
T d1j32a_ 100 KQSIFNLMLAM----IEPGDEVIIPAPFWV----SYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNT 171 (388)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEESSCCT----HHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHHHHHH----hCCCCEEEEcCCCcH----HHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECC
Confidence 99999999998 789999999999999 456666777999999987643 57899999999999999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc----CCCCCC-----CCcEEEecccCCCCCCc--eeEEEE
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV----VDVQGL-----DADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~----~~~~~~-----~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
|+||||.+++ +++|+++|+++|++||+|++|+..... ..+... +..+++.|+||.|+.+| +||++.
T Consensus 172 P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~ 251 (388)
T d1j32a_ 172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG 251 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred CCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEE
Confidence 9999999999 678888999999999999999733221 111111 25688999999998777 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS 362 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~ 362 (458)
++++++.+..... .....++.....++...+....+ .+.+.++++++..+.+.+.|++
T Consensus 252 ~~~~~~~~~~~~~---------------------~~~~~~~~~~q~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 309 (388)
T d1j32a_ 252 PVPLVKAATKIQG---------------------HSTSNVCTFAQYGAIAAYENSQD-CVQEMLAAFAERRRYMLDALNA 309 (388)
T ss_dssp CHHHHHHHHHHHH---------------------TTTCSCCHHHHHHHHHHHHSCSH-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhh---------------------hccccccHHHHHHHhhcccchHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 9887765542221 11123344344444333332212 2677888888999999999999
Q ss_pred CCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHH
Q 012718 363 IPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 440 (458)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di 440 (458)
.+++++..+. .+.++|++++ +.+..++++.|.+++||.+.||.. +|.++++|++++ .+.+++
T Consensus 310 ~~g~~~~~p~------gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~--------F~~~~~~Rls~~--~~~e~l 373 (388)
T d1j32a_ 310 MPGLECPKPD------GAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAA--------FGADDCIRLSYA--TDLDTI 373 (388)
T ss_dssp CTTCBCCCCC------BTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGG--------GTCTTBEEEECC--SCHHHH
T ss_pred CCCCEecCCC------ceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccc--------cCCCCeEEEEEe--CCHHHH
Confidence 8888776554 1557888876 456778888876555999999973 455789999998 688999
Q ss_pred HHHHHHHHHHHHhh
Q 012718 441 DEFIHALNETVSFF 454 (458)
Q Consensus 441 ~~l~~~l~~~~~~~ 454 (458)
++.+++|+++++.+
T Consensus 374 ~~al~rl~~~l~~l 387 (388)
T d1j32a_ 374 KRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=100.00 E-value=3.1e-34 Score=276.97 Aligned_cols=358 Identities=14% Similarity=0.176 Sum_probs=278.6
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
+|-+.+++..+++|++++.+. ..++++..+.+.++++|+.|++++|+++.+.|+|++|+|.+++.++.++
T Consensus 19 ~l~~PGP~~~~~~V~~Am~~~----------~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l 88 (388)
T d2ch1a1 19 IMMGPGPSNCSKRVLTAMTNT----------VLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL 88 (388)
T ss_dssp BCCSSSSCCCCHHHHHHTTSC----------CCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH
T ss_pred eeeeCCCCCCCHHHHHHhCcC----------CCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHh
Confidence 344556667889998886322 3356677899999999999999999986645677889999999999998
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc-CCceEEEEecccCcCcccccHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-RKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
+.+|+++++...++.+. .+...+.+.+...+.+...+....+.+..++.+. .+++++++++.+|.||...|++
T Consensus 89 ----~~~~~~vl~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~ 162 (388)
T d2ch1a1 89 ----LEEGDRVLIAVNGIWAE--RAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLE 162 (388)
T ss_dssp ----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred ----ccccccccccccccccc--cchhhhhhhcccccccccccccccchhhhhhhhccCCcceeeeeecccccccccchh
Confidence 67899999999888876 4566677889899988888776677777666653 4789999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCC
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH 307 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 307 (458)
+|.++||++|+++++|+++++|..+++++++++|++++|.|| +.||+|+|+++.+++.++.+.....++......+...
T Consensus 163 ~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
T d2ch1a1 163 GVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLL 242 (388)
T ss_dssp THHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHH
T ss_pred hhcchhccccceeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhh
Confidence 999999999999999999999999999999999999999999 5679999999999987665443322222111000000
Q ss_pred --CCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEEE
Q 012718 308 --STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALCS 384 (458)
Q Consensus 308 --~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v~ 384 (458)
............+|++...+.++..+++.+...+.....++.+.+..++...+... +.......+ ..++ .+++
T Consensus 243 ~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~rs~~v~~ 318 (388)
T d2ch1a1 243 GNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDP---RHRLPTVTG 318 (388)
T ss_dssp HHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSG---GGBCTTEEE
T ss_pred hhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhc-ccccccCCH---HHhCCeEEE
Confidence 01111223344679999999999999999888888888888888888888877665 333333332 2344 4889
Q ss_pred EEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe-eCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 385 FNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS-LHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 385 ~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis-~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
|.++ +++..++.+.|.+++||.+++|.+|.. .+.+||| ++.+++.|||++++++|+++++...
T Consensus 319 ~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~--------~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~ 383 (388)
T d2ch1a1 319 IMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTF--------GKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 383 (388)
T ss_dssp EECCTTCCHHHHHHHHHHHHCBCCBCCCGGGT--------TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHhhcCCEEEeCCCcccc--------CCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence 9996 688899999997777999998875421 4689999 6788899999999999999998753
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-34 Score=274.54 Aligned_cols=344 Identities=15% Similarity=0.144 Sum_probs=260.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCC-cEEEeCChhHHHHHHHHHcCCCC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSG-EIVFTKNATEAINLVAYSWGLSN 153 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-~v~~t~g~t~a~~~~~~~l~~~~ 153 (458)
++.+.|+.|++++.+. ..++.+..+.+.++++|+.+++++|+++++ .+++|+|+|.+++.++.++
T Consensus 7 GP~~~~~~V~~A~~~~----------~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l---- 72 (361)
T d1m32a_ 7 GPLTTSRTVKEAMLFD----------SCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA---- 72 (361)
T ss_dssp SSCCCCHHHHHTTCCC----------CCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS----
T ss_pred CCCCCCHHHHHHhhhh----------ccCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHh----
Confidence 3557888888876421 234455567788899999999999998764 3678899999999999998
Q ss_pred CCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCC--CHHHHHHhhcCCceEEEEecccCcCcccccHHHHH
Q 012718 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESP--DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231 (458)
Q Consensus 154 ~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~--d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~ 231 (458)
..+++.+++....+.... +...+...+.....+........ +.+.......++++++++++.+|.||...|+++|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~ 150 (361)
T d1m32a_ 73 LGPQDKVLIVSNGAYGAR--MVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVG 150 (361)
T ss_dssp CCTTCCEEEEESSHHHHH--HHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHH
T ss_pred hhhccccceeeehhhhhh--HHHHhhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhhhh
Confidence 455556555555544332 23334555666666666555433 33444555677999999999999999999999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCC
Q 012718 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTF 310 (458)
Q Consensus 232 ~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 310 (458)
++||++|+++++|++|++|..+++++++++|++++|.|| ++||+|+|+++++++.++...+...++..........
T Consensus 151 ~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 227 (361)
T d1m32a_ 151 ALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRC--- 227 (361)
T ss_dssp HHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHH---
T ss_pred hhhcccceeeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhcc---
Confidence 999999999999999999999999999999999999999 5579999999999999888887776655432111100
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc-EEEEEeC
Q 012718 311 ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA-LCSFNVE 388 (458)
Q Consensus 311 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 388 (458)
.....+...+|++.....++..++..+...+ .+...++...+++.+.+.+... +..+..++ ..+++ +++|.++
T Consensus 228 ~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~----~~rs~~v~~~~~p 302 (361)
T d1m32a_ 228 MEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDD----ELHSPIITAFYSP 302 (361)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCG----GGBCSSEEEEECC
T ss_pred ccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc-CCcccCCh----hhcCCcEEEEECC
Confidence 0111334467999999999998888777765 4566678888889999998877 66554443 23344 7788876
Q ss_pred ---CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 389 ---NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 389 ---~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
+.+..++.+.|.++ ||.+.+|..+ .++.+|||+..|++++||++++++|++++.
T Consensus 303 ~~~~~~~~~~~~~l~~~-gi~i~~G~~~---------~~~~~Ris~~g~~~~~di~~lv~al~~~L~ 359 (361)
T d1m32a_ 303 EDPQYRFSEFYRRLKEQ-GFVIYPGKVS---------QSDCFRIGNIGEVYAADITALLTAIRTAMY 359 (361)
T ss_dssp CCTTCCHHHHHHHHHHT-TEECEECCCS---------SSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHC-CcEEECCCcC---------CCCEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 35678899999998 9999877532 267899997667999999999999999863
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.9e-34 Score=273.09 Aligned_cols=360 Identities=18% Similarity=0.191 Sum_probs=276.6
Q ss_pred ecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC---CCCcEEEeCChhHHHHHHHH
Q 012718 71 LDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS---DSGEIVFTKNATEAINLVAY 147 (458)
Q Consensus 71 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~---~~~~v~~t~g~t~a~~~~~~ 147 (458)
|=+.++.+.|+.|+++|... ...+++..+.+.++++++.+.+.++.. ..+.|+||+|+|++++.++.
T Consensus 6 l~~PGP~~v~~~V~~Am~~~----------~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~ 75 (382)
T d2bkwa1 6 LLIPGPIILSGAVQKALDVP----------SLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFAS 75 (382)
T ss_dssp ECSSSSCCCCHHHHHTTSCC----------CCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHhCcc----------cCCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHH
Confidence 44456667889998887321 223445667778888888888888752 22378999999999999999
Q ss_pred HcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhc-CCceEEEEecccCcCcccc
Q 012718 148 SWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLS-RKTKLVVIHHISNMLASIL 225 (458)
Q Consensus 148 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~ 225 (458)
++.. .+++||+|++...++++.. +...++..|..+..+...+. ...+.+.+++.+. .+++++++++.+|.||...
T Consensus 76 ~l~~-~~~~gd~vlv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~ 152 (382)
T d2bkwa1 76 NFIL-SKAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLS 152 (382)
T ss_dssp HHSC-TTCSCCEEEEECSSHHHHH--HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEEC
T ss_pred HHHH-hcCCCCceEEEEechhhhh--hhhhccccccccccccccCCCCccchhHHHHHhhhccchheeeeeccccccccc
Confidence 9832 4678999999999998874 45556777888887765444 4567788877764 4789999999999999999
Q ss_pred cHHHHHHHHHhc--CcEEEEeccccCCcccCCCCCCCCcEEEecccCCC-CCCceeEEEEeccccccCCCccccCcceEe
Q 012718 226 PIEEIVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-GPTGIGFLFGKSDLLSAMPPFLGGGEMISD 302 (458)
Q Consensus 226 ~l~~i~~l~~~~--~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~ 302 (458)
|++++.+.|+++ ++++++|++|++|..|++++++++|++++|.||++ ||+|+|+++++++.++.+.+...++.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~ 232 (382)
T d2bkwa1 153 DLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGY 232 (382)
T ss_dssp CHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCS
T ss_pred cchhhhhhccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccc
Confidence 999999998876 59999999999999999999999999999999955 899999999999988877765544332110
Q ss_pred eecCCCCC------CCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCc
Q 012718 303 VFLDHSTF------ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEH 376 (458)
Q Consensus 303 ~~~~~~~~------~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~ 376 (458)
+.....+ .....+...+|++...++++..+|+++.+.|++.+.++.+++++++.+.+.+..+...+...+.
T Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~-- 309 (382)
T d2bkwa1 233 -FSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPS-- 309 (382)
T ss_dssp -TTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSS--
T ss_pred -hhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCch--
Confidence 0000000 0112455678999999999999999999999999999999999999999988767776654332
Q ss_pred Cccc-cEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe-eCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 377 VQRA-ALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS-LHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 377 ~~~~-~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis-~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
..+. .+++|.++ +..++.+.|.++ ||.+..|..+.. + .+.+||| ++...+.+||+++++.|+.+.+.+
T Consensus 310 ~~~s~~v~~~~~~--~~~~~~~~L~~~-gi~i~~G~~~~~------~-~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L 379 (382)
T d2bkwa1 310 NMSAHGLTAVYVA--DPPDVIAFLKSH-GVVIAGGIHKDI------G-PKYIRIGHMGVTACNKNLPYMKNCFDLIKLAL 379 (382)
T ss_dssp TTBCSSCEEEECS--CHHHHHHHHHHT-TEECBCCCCTTT------G-GGEEEECCCGGGTSSTTCTHHHHHHHHHHHHT
T ss_pred hccCCcEEEEcCC--CHHHHHHHHHHC-CeEEECCCChhh------c-CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 2333 46777776 578899999877 999988864321 1 4689999 667667889999999998777766
Q ss_pred hc
Q 012718 455 NV 456 (458)
Q Consensus 455 ~~ 456 (458)
++
T Consensus 380 ~~ 381 (382)
T d2bkwa1 380 QR 381 (382)
T ss_dssp TC
T ss_pred Cc
Confidence 54
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=100.00 E-value=2.8e-34 Score=276.19 Aligned_cols=355 Identities=16% Similarity=0.161 Sum_probs=281.0
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
.+|...++++.|+.|+++|... ..++++..+.+.++++|+.+++++|+++.+.|+|++|||.+++.++..
T Consensus 19 ~~l~~PGP~~v~~~Vl~am~~~----------~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~ 88 (377)
T d1vjoa_ 19 RLLLGPGPSNAHPSVLQAMNVS----------PVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN 88 (377)
T ss_dssp CEECSSSCCCCCHHHHHHHSSC----------CCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH
T ss_pred ceeecCCCCCCCHHHHHHhCcC----------CCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHh
Confidence 5788888889999999887432 345667789999999999999999998776888899999999999999
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHh-hcCCceEEEEecccCcCcccccH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEM-LSRKTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~-l~~~~~~v~~~~~~n~tG~~~~l 227 (458)
+ +.+++++++...+|.+. .+...+...+.....+....+...+.+..+.. ...+++++++.+.+|.||.+.|+
T Consensus 89 ~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i 162 (377)
T d1vjoa_ 89 A----VEPGDVVLIGVAGYFGN--RLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPL 162 (377)
T ss_dssp H----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred c----cccccccceeeechhhh--hhhhhhhhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeech
Confidence 8 78899999999888866 44556677787777777666555555555444 45588999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
++|.++||++|.++++|++|++|..+++++.+++|++++|.|| ++||+|+|+++.+++.++...+...++........
T Consensus 163 ~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (377)
T d1vjoa_ 163 EGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMN- 241 (377)
T ss_dssp TTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH-
T ss_pred hhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccc-
Confidence 9999999999999999999999999999999999999999999 67799999999999877655443332221100000
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN 386 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (458)
.........++..++++......+..+.......|.+...++.+++.+++.+.+... ++.+..++. .++..+++|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~---~rs~~v~~~~ 317 (377)
T d1vjoa_ 242 LLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKE---YRLPTLTTVC 317 (377)
T ss_dssp HHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGG---GBCSSEEEEE
T ss_pred hhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhcc-CceeecChH---hcCCeEEEEE
Confidence 000011124556778888888888888888888999999999999999999999886 665554432 2334588898
Q ss_pred eC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEe-eCCCCCHHHHHHHHHHHHHHHH
Q 012718 387 VE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARAS-LHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 387 ~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis-~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++ +.+..++.+.|.+++||.+..|..+. ..+.+||| ++++++.|||++++++|+++++
T Consensus 318 ~p~~~~~~~l~~~L~~~~gI~v~~G~~~~--------~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 318 IPDGVDGKAVARRLLNEHNIEVGGGLGEL--------AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp CCTTCCHHHHHHHHHHHHCEECEECCGGG--------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEecCcccc--------cCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 86 57899999998766699998876431 15689999 5788899999999999999874
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.2e-34 Score=273.87 Aligned_cols=336 Identities=17% Similarity=0.189 Sum_probs=248.6
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHh-ccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------CCCCCcEEEeCC
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAY-NSNVHRGIHFLSAKATDEYELARKKVAAFIN------ASDSGEIVFTKN 137 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~~v~~t~g 137 (458)
+++|.|..|..+ ++|+.+.+++.+.++.. ..++ ...+..++|+++|++++ ..+.++|++|+|
T Consensus 25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~----------~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G 94 (388)
T d1gdea_ 25 KDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYG----------PNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLG 94 (388)
T ss_dssp TTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCC----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESS
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCC----------CCcCCHHHHHHHHHHHHhhccccCCChheeeeccC
Confidence 678999988776 67889999998887652 1111 12234477888887763 223348999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++++.+++.++ +++||.|++++|+|.. +...++..|++++.++.++ ++.+|+++|++.+++++++++++
T Consensus 95 ~~~~l~~~~~~l----~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~ 166 (388)
T d1gdea_ 95 ANQAFLMGLSAF----LKDGEEVLIPTPAFVS----YAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIIN 166 (388)
T ss_dssp TTHHHHHHHTTT----CCTTCEEEEEESCCTT----HHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEE
T ss_pred cchHHHHHHHHh----cCCCCEEEECCCCcHH----HHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEEC
Confidence 999999999887 7899999999999994 4666677799999999874 35789999999999999999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc------c-CCCCC-CCCcEEEecccCCCCCCc--eeEEEE
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------V-VDVQG-LDADFLVASSHKMCGPTG--IGFLFG 282 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~------~-~~~~~-~~~d~~~~s~~K~~gp~g--~G~l~~ 282 (458)
+|+||||.+++ +++|+++|++++++||+|++|+.-.. + ..+.. .+..+++.|+||.||.+| +||+++
T Consensus 167 ~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~ 246 (388)
T d1gdea_ 167 SPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA 246 (388)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEEC
T ss_pred CCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEe
Confidence 99999999998 67888999999999999999983221 1 11222 235789999999998777 999999
Q ss_pred eccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHh
Q 012718 283 KSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLS-TIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 283 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
+++.++.+...... ...+++.....++..+++... ...+....+++.+..+.+.+.|.
T Consensus 247 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (388)
T d1gdea_ 247 PSWIIERMVKFQMY---------------------NATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLN 305 (388)
T ss_dssp CHHHHHHHHHHHHT---------------------TTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccchhhhhhcccc---------------------ccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhh
Confidence 98876665433221 112333333344444443111 11245666777788888888887
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHH
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKED 439 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~d 439 (458)
.. ++.+..+. .+.++|++++ +.+..++++.|.+++||.+.||..+... .++++||+++ .+.++
T Consensus 306 ~~-~~~~~~p~------gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~------~~~~iRis~~--~~~e~ 370 (388)
T d1gdea_ 306 EM-GLPTVKPK------GAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKA------GEGYVRISYA--TAYEK 370 (388)
T ss_dssp HT-TCCCCCCC------BTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGG------GTTBEEEECC--SCHHH
T ss_pred hc-cccccCCC------ceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCC------CCCEEEEEec--CCHHH
Confidence 76 55544433 1558888886 4577888888766559999999865432 2689999998 68899
Q ss_pred HHHHHHHHHHHHHhhh
Q 012718 440 VDEFIHALNETVSFFN 455 (458)
Q Consensus 440 i~~l~~~l~~~~~~~~ 455 (458)
+++.+++|.+++++.+
T Consensus 371 l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 371 LEEAMDRMERVLKERK 386 (388)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998764
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.2e-33 Score=267.37 Aligned_cols=329 Identities=16% Similarity=0.185 Sum_probs=242.9
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~g 137 (458)
|.++|.|..|... ++|+.+.+++.+.+.+... . |.......++|+.+++++ | +++ ++|++|+|
T Consensus 30 G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~---~------Y~~~~G~~~lR~~ia~~~~~~~~~~~~~-~~i~it~G 99 (382)
T d1b5pa_ 30 GVDLVALTAGEPDFDTPEHVKEAARRALAQGKT---K------YAPPAGIPELREALAEKFRRENGLSVTP-EETIVTVG 99 (382)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCC---S------CCCTTCCHHHHHHHHHHHHHTTCCCCCG-GGEEEESH
T ss_pred CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCc---C------CCCCCCCHHHHHHHHhhhhhhccccccc-ccceecCC
Confidence 5678999988776 6789999999988764211 0 111223346777777766 3 344 49999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEEEEe
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLVVIH 215 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v~~~ 215 (458)
+++|+..++.++ +++||.|++++|+|+ .+...++..|.+++.++..+ ++.+|++.+++.+++++++++++
T Consensus 100 ~~~al~~~~~~l----~~~gd~vl~~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~ 171 (382)
T d1b5pa_ 100 GSQALFNLFQAI----LDPGDEVIVLSPYWV----SYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVN 171 (382)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEEESCCT----HHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEE
T ss_pred HHHHHHHHHHHh----CCCCCEEEECCCCcH----HHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEEC
Confidence 999999999998 789999999999999 55677788899999999774 35779999999999999999999
Q ss_pred cccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc---cCC--CCCCCCcEEEecccCCCCCCc--eeEEEEecc
Q 012718 216 HISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM---VVD--VQGLDADFLVASSHKMCGPTG--IGFLFGKSD 285 (458)
Q Consensus 216 ~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~---~~~--~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~ 285 (458)
+|+||||.+++ +++|+++|+++|++||+|++|+.-.. +.. ....+..+++.|+||.|+.+| +||++++++
T Consensus 172 ~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~ 251 (382)
T d1b5pa_ 172 SPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKE 251 (382)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred CCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEECHH
Confidence 99999999999 77899999999999999999983221 111 112246788899999998777 999999988
Q ss_pred ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHhcC
Q 012718 286 LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDY--LSTIGMQKIHAYEMELAKYLYENLLSI 363 (458)
Q Consensus 286 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~--~~~~g~~~~~~~~~~l~~~l~~~L~~~ 363 (458)
+++.+..... ....+++.....++...+.. ....-+...++..++.++.+.+.+...
T Consensus 252 ~i~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (382)
T d1b5pa_ 252 VIKAMASVSR---------------------QSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL 310 (382)
T ss_dssp HHHHHHHHHH---------------------TTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------hcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc
Confidence 7765543221 11123333333333333321 111124566677777888888888776
Q ss_pred CCEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 364 PNIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
++++..+. .+.++|++++. .+...+.+.|.++ ||.+.||.. ++.++++|++++ .++++++
T Consensus 311 -g~~~~~p~------gg~~~~~~~~~~~~~~~~~~~~l~e~-gV~v~PG~~--------F~~~~~iRis~~--~~~e~l~ 372 (382)
T d1b5pa_ 311 -GLKAVRPS------GAFYVLMDTSPIAPDEVRAAERLLEA-GVAVVPGTD--------FAAFGHVRLSYA--TSEENLR 372 (382)
T ss_dssp -TCCBCCCS------BTTEEEEECTTTCSSHHHHHHHHHHT-TEECEESGG--------GTCTTEEEEECC--SCHHHHH
T ss_pred -CCeEecCC------ceEEEeEeCCCCCCCHHHHHHHHHHC-CEEEEeCcc--------cCCCCeEEEEEc--CCHHHHH
Confidence 67665443 15588998863 4677788888888 999999973 455789999997 5888999
Q ss_pred HHHHHHHHH
Q 012718 442 EFIHALNET 450 (458)
Q Consensus 442 ~l~~~l~~~ 450 (458)
+.+++|.++
T Consensus 373 ~al~rl~~~ 381 (382)
T d1b5pa_ 373 KALERFARV 381 (382)
T ss_dssp HHHHHGGGG
T ss_pred HHHHHHHHh
Confidence 988888765
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3e-32 Score=260.91 Aligned_cols=328 Identities=17% Similarity=0.175 Sum_probs=248.7
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
+.|.|..|.+. ++|+.+.+++.+.+.....++. .....++|+++|++++++++ +|++|+|+++++..+
T Consensus 26 ~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~----------~~G~~elr~aiA~~~~~~~~-~Iiit~G~~~al~~~ 94 (368)
T d1v2da_ 26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAP----------PAGLPALREALAEEFAVEPE-SVVVTSGATEALYVL 94 (368)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCC----------TTCCHHHHHHHHHHHTSCGG-GEEEESSHHHHHHHH
T ss_pred CCEEecCCCCCCCCCHHHHHHHHHHhhcccCCCC----------CcCCHHHHHHHHhhcccCCc-ceeeccchHHHHHHH
Confidence 46888877765 6789999999988754332222 22345899999999999876 999999999999999
Q ss_pred HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCC---CCCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 146 AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN---DDESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 146 ~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~---~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
+.++ .++||.|++++|+|+.. ...++..|.+++.++++ ..+.+|++.+++.+.++++++++++|+||||
T Consensus 95 ~~~l----~~~~d~v~~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG 166 (368)
T d1v2da_ 95 LQSL----VGPGDEVVVLEPFFDVY----LPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTG 166 (368)
T ss_dssp HHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTC
T ss_pred hhcc----ccccccccccCCcchhh----hhHHHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCccc
Confidence 9998 78999999999999954 44556679999888875 2366899999999999999999999999999
Q ss_pred cccc---HHHHHHHHHhcCcEEEEeccccCCcccCCC-----CCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCC
Q 012718 223 SILP---IEEIVHWSHDVGAKVLVDACQSVPHMVVDV-----QGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPP 292 (458)
Q Consensus 223 ~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~~~-----~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~ 292 (458)
.+++ +++|+++|++||+++|+|++|......... ...+..+++.|++|.++.+| +|+++.++++++.+..
T Consensus 167 ~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~ 246 (368)
T d1v2da_ 167 LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAG 246 (368)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhhh
Confidence 9998 778999999999999999999854432221 12235677889999777666 9999999988766553
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
....+ ..+++.....++..++...... .+++++++++++++++.+.|+++ |+++..+
T Consensus 247 ~~~~~---------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~p 304 (368)
T d1v2da_ 247 MRQWT---------------------SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVP 304 (368)
T ss_dssp HHHHH---------------------TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECC
T ss_pred hhhcc---------------------ccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEEecC
Confidence 33211 1233443444444555543332 36788888899999999999988 8888766
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
.. +.++|+++++.+..+ .|.++ ||.++||+.|.... ..++++|||++ .+++++++++++|++++
T Consensus 305 ~g------~~~~~~~l~~~~~~~---ll~~~-gI~v~pg~~F~~~~----~~~~~iRis~~--~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 305 EG------TYFLMAELPGWDAFR---LVEEA-RVALIPASAFYLED----PPKDLFRFAFC--KTEEELHLALERLGRVV 368 (368)
T ss_dssp SB------SSEEEEECTTCCHHH---HHHHT-CEECEEGGGGCSSS----CCTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred Cc------eeEEEEeCCccHHHH---HHHhC-CEEEEechhhCCCC----CCCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence 52 568999998765543 45666 99999998553211 12689999987 68899999999998864
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.9e-31 Score=251.42 Aligned_cols=341 Identities=16% Similarity=0.166 Sum_probs=266.2
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
||-..++.+.++.|++++.+. ..++++..+.+.++++++.|+++++.+.+ .+++++|+|.+++.++.++
T Consensus 2 ~L~~PGP~~v~~~V~~am~~~----------~~~hr~~~f~~i~~~~~~~l~~ll~~~~~-~i~~~gsgT~a~e~~~~nl 70 (348)
T d1iuga_ 2 WLLTPGPVRLHPKALEALARP----------QLHHRTEAAREVFLKARGLLREAFRTEGE-VLILTGSGTLAMEALVKNL 70 (348)
T ss_dssp EECSSSSCCCCHHHHHHHHSC----------CCCTTSHHHHHHHHHHHHHHHHHHTCSSE-EEEEESCHHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHhcCC----------CCCCCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeCchHHHHHHHHHhc
Confidence 566667788999999887542 23456677889999999999999998754 7889999999999999988
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
+.+|+++++...++.+. .|...+++.|.+++.++.+....++++. ....+++.++++|..+.||...|+++
T Consensus 71 ----~~~g~~vlv~~~G~f~~--~~~~~a~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~v~~~h~eTstG~~~~i~~ 141 (348)
T d1iuga_ 71 ----FAPGERVLVPVYGKFSE--RFYEIALEAGLVVERLDYPYGDTPRPED---VAKEGYAGLLLVHSETSTGALADLPA 141 (348)
T ss_dssp ----CCTTCEEEEEECSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCTTT---SCCSSCSEEEEESEETTTTEECCHHH
T ss_pred ----ccccccceeecchHHHH--HHHHHHHhcCcccccccccCCCcccccc---ccccCCCeeEEEecchhhhhhccHHH
Confidence 78999999999888776 4677888999999988876554444433 33567899999999999999999999
Q ss_pred HHHHHHhc--CcEEEEeccccCCcccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 230 IVHWSHDV--GAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 230 i~~l~~~~--~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
|.++|+++ +.++++|+++++|..|++++++++|++++|.|| +.||+|+|+++++++.++++++... +.+
T Consensus 142 i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~--------~~d 213 (348)
T d1iuga_ 142 LARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGY--------YLD 213 (348)
T ss_dssp HHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSS--------TTC
T ss_pred HHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhccccc--------ccc
Confidence 99999987 489999999999999999999999999999999 5589999999999998888875211 111
Q ss_pred CCCC-CCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEE
Q 012718 307 HSTF-ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSF 385 (458)
Q Consensus 307 ~~~~-~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (458)
...+ .....+...+||+...++++..+|+.+.+.+.+. .++.+...+.+...+... +++..... .+..+++|
T Consensus 214 l~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-gl~~~~~~-----~s~~v~~~ 286 (348)
T d1iuga_ 214 LARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEH-LALKAWQNALLYGVGEEG-GLRPVPKR-----FSPAVAAF 286 (348)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHH-HHHHHHHHHHHHHHHHHT-TCEESCSS-----BCTTCEEE
T ss_pred hhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhhhhhhh-hhccChhh-----cCCeEEEE
Confidence 0000 0011234467999999999999999887664433 344444455666666555 78765332 22347899
Q ss_pred EeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 386 NVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 386 ~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+| +++..++.+.|.++ ||.+.+|..+ +. ...+||+...+++.+|++++++.|+++++++
T Consensus 287 ~~P~g~~~~~~~~~l~~~-gi~i~~G~~~-------l~-~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 287 YLPEGVPYARVKEAFAQR-GAVIAGGQGP-------LK-GKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp ECCTTCCHHHHHHHHHTT-TEECEECCGG-------GT-TTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHC-CeEEEcCccc-------cC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 997 68889999999987 9999877521 11 4589999776799999999999999999875
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=4.7e-32 Score=263.38 Aligned_cols=340 Identities=17% Similarity=0.169 Sum_probs=241.9
Q ss_pred CCeEEecCCCCC-----CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcC------------CCC
Q 012718 66 KKLVYLDNAATS-----QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN------------ASD 128 (458)
Q Consensus 66 ~~~i~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g------------~~~ 128 (458)
+++|.|..|.+. ++++.+.+++.+.+.....+- |....+..++|+++|+++. .++
T Consensus 30 ~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--------Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~ 101 (412)
T d1bw0a_ 30 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNG--------YFPTVGSPEAREAVATWWRNSFVHKEELKSTIVK 101 (412)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSS--------CCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred CCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCC--------CCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCC
Confidence 578999887543 355777888877765421111 1112234467777777652 233
Q ss_pred CCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhc
Q 012718 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLS 206 (458)
Q Consensus 129 ~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~ 206 (458)
++|++|+|+++|+.+++.++ +++||.|++++|+|+ .+...++..|++++.++++++ +..+++.+++.+.
T Consensus 102 -~~I~it~G~~~al~~~~~~l----~~~Gd~Vlv~~P~y~----~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~ 172 (412)
T d1bw0a_ 102 -DNVVLCSGGSHGILMAITAI----CDAGDYALVPQPGFP----HYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD 172 (412)
T ss_dssp -GGEEEESHHHHHHHHHHHHH----CCTTCEEEEEESCCT----HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC
T ss_pred -CeEEEecccccchhhhhhhh----hccccceeeeeccch----hhhhhhhccCccccccccccccccchhhHHHHhhhh
Confidence 49999999999999999998 789999999999999 556777888999999998753 5679999999999
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----ccC-------CCCCCCCcEEEecccCCC
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MVV-------DVQGLDADFLVASSHKMC 272 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~~-------~~~~~~~d~~~~s~~K~~ 272 (458)
++++++++++++||||.+++ +++|+++|++++++||+|++|..-. .+. +.......+++.|+||.+
T Consensus 173 ~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~ 252 (412)
T d1bw0a_ 173 DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL 252 (412)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT
T ss_pred ccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccC
Confidence 99999999999999999998 6788888999999999999997211 111 112223457778999988
Q ss_pred CCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 012718 273 GPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEM 350 (458)
Q Consensus 273 gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~ 350 (458)
+.+| +||+++++............ ... .....++....+..+.........+ .+.+++++++
T Consensus 253 ~~~G~RvG~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 316 (412)
T d1bw0a_ 253 VVPGWRLGWLLYVDPHGNGPSFLEGL-KRV--------------GMLVCGPCTVVQAALGEALLNTPQE-HLDQIVAKIE 316 (412)
T ss_dssp SCGGGCCEEEEEECTTCSCHHHHHHH-HHH--------------HHHHTCSCHHHHHHHHHHHHSSCHH-HHHHHHHHHH
T ss_pred ccCCCCcccccccchhhcchhhhhhh-ccc--------------cccccCCchhhhhhccccccccccc-ccccccchhH
Confidence 8778 99999987654331100000 000 0011122222222222222221122 2567888899
Q ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 351 ELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 351 ~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
+.++.+.+.|.+.+++.+..+.. +.++|.+++. .+..+++++|.+++||.+.||+. ||.+
T Consensus 317 ~~r~~~~~~l~~~~g~~~~~p~g------g~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~--------Fg~~ 382 (412)
T d1bw0a_ 317 ESAMYLYNHIGECIGLAPTMPRG------AMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTI--------FHAP 382 (412)
T ss_dssp HHHHHHHHHHTTSTTEEECCCCB------TTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGG--------GTCT
T ss_pred HHHHHHHHHHHHhcCceecCCCC------ceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccc--------cCCC
Confidence 99999999998888998876542 5578877751 35678888876655999999973 4568
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 425 ASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+++|||++ .+++++++.+++|++++++-
T Consensus 383 g~iRis~~--~~~e~l~eal~Rl~~~l~~~ 410 (412)
T d1bw0a_ 383 GFTRLTTT--RPVEVYREAVERIKAFCQRH 410 (412)
T ss_dssp TEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEc--CCHHHHHHHHHHHHHHHHhc
Confidence 89999997 68899999999999998864
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.3e-31 Score=254.39 Aligned_cols=335 Identities=17% Similarity=0.190 Sum_probs=230.1
Q ss_pred CCCCcHHHHHHHHHHHHHhccCCC-CCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCC
Q 012718 76 TSQKPIAVLKALQNYYEAYNSNVH-RGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNL 154 (458)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~ 154 (458)
.+.+++++.+++.++...+..... .+............+.+++.+|+++|++ ++++|+|+|+|+..++.++ +
T Consensus 11 ~~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e---~~~~t~g~t~a~~~~~~al----~ 83 (364)
T d2e7ja1 11 GGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGAREAKFAVMHSL----A 83 (364)
T ss_dssp TCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEESSHHHHHHHHHHHH----C
T ss_pred CCcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcC---EEEEECcHHHHHHHHHHHH----h
Confidence 456788899999887543211000 0000000011235677899999999986 8899999999999999998 7
Q ss_pred CCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcC-----CceEEEEecccCcCcccccH
Q 012718 155 KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSR-----KTKLVVIHHISNMLASILPI 227 (458)
Q Consensus 155 ~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~-----~~~~v~~~~~~n~tG~~~~l 227 (458)
++||.|+++.++|+++..+ ++..|++++.+|+++ ++.+|++++++.+++ ++++|++++++|+||.+.|+
T Consensus 84 ~~gd~Vi~~~~~h~s~~~~----~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l 159 (364)
T d2e7ja1 84 KKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDV 159 (364)
T ss_dssp CTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCH
T ss_pred CCCcEEEeecccccccchH----HHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecc
Confidence 8999999999999977544 456799999999874 478999999999864 34689999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCC-ceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPT-GIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 228 ~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
++|.++|++||+++++|++|+.|..++++.++++|++++|+||++|++ |+|+++.+++.++.+......+..
T Consensus 160 ~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~------- 232 (364)
T d2e7ja1 160 KKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKN------- 232 (364)
T ss_dssp HHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTT-------
T ss_pred hhheeccccccchhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCc-------
Confidence 999999999999999999999999988888889999999999977654 599999999877665432211110
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEE
Q 012718 307 HSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFN 386 (458)
Q Consensus 307 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (458)
....+..++.......++.++++...+. ++...+. .+.++++.+.|.++ ++.+....+. ....+.+.
T Consensus 233 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~~~~~~~~~l~~~-g~~~~~~~~~----~~~~~~~~ 299 (364)
T d2e7ja1 233 ------KEVELLGCTARGATIITLMASFPHVRER-IKRWDEE-VEKARRFAAEMEKL-GIKQLGDNPH----NHDLMFFH 299 (364)
T ss_dssp ------SBGGGTTCCCCSHHHHHHHHHHHHHHHH-GGGHHHH-HHHHHHHHHHHHHT-TCEEESSSSC----CSSEEEEE
T ss_pred ------ccccccccccchhHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHc-CCeecCCCCC----CcceEEEe
Confidence 0112223444445555666666655442 2333333 35677888888887 6776655432 13344444
Q ss_pred eCC---------CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 387 VEN---------IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 387 ~~~---------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+. .....+...+..+ ++.... .|....+|++. +..|++||++++++|++++++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~-----------~g~~~~~~~~~-~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 300 AEVLYEISKKAKGGRFFLYRELKSR-KIHGIK-----------PGLTRYFKLST-YGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp CHHHHHHHHHSSSGGGHHHHHHHHT-TEECSC-----------TTCCSEEEEEC-TTCCHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHhhccchHHHHHHHhc-CCceec-----------CCCcceEEEec-cCCCHHHHHHHHHHHHHHHHHh
Confidence 321 0112334445555 654321 12245677763 3378999999999999999864
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.5e-31 Score=257.92 Aligned_cols=338 Identities=16% Similarity=0.154 Sum_probs=241.7
Q ss_pred CCCeEEecCCCCC----CCcHHHHHHHHHHHHHhc-cCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCC-CCcEEE
Q 012718 65 SKKLVYLDNAATS----QKPIAVLKALQNYYEAYN-SNVHRGIHFLSAKATDEYELARKKVAAFI----NASD-SGEIVF 134 (458)
Q Consensus 65 ~~~~i~l~~~~~~----~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~-~~~v~~ 134 (458)
|.++|.|+.|.+. ++|+.+.+++.+.+.... .++ ......++|+++++++ |.+- .++|++
T Consensus 29 G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~----------~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i 98 (395)
T d1xi9a_ 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYG----------DSEGLPELRKAIVEREKRKNGVDITPDDVRV 98 (395)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCC----------CTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred CCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCC----------CCCCCHHHHHHHHHhhhhccccccccccccc
Confidence 5778999988642 678899999999886521 111 1222345666666665 5442 249999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC--CCCCCHHHHHHhhcCCceEE
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND--DESPDLDKLKEMLSRKTKLV 212 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~v 212 (458)
|+|+++++.+++.++ .++||+|++++|+|+ .+...++..|++++.++... ++.+|++.+++.+.++++++
T Consensus 99 ~~G~~~~~~~~~~~~----~~~Gd~vlv~~P~y~----~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v 170 (395)
T d1xi9a_ 99 TAAVTEALQLIFGAL----LDPGDEILVPGPSYP----PYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAI 170 (395)
T ss_dssp ESHHHHHHHHHHHHH----CCTTCEEEEEESCCH----HHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEE
T ss_pred ccccchhhhhhhhhh----cCCCCEEEEcCCccc----cchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccccEE
Confidence 999999999999998 789999999999998 55667788899999998653 45689999999999999999
Q ss_pred EEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc------cCCCCCCCCcEEEecccCCCCCCc--eeEEE
Q 012718 213 VIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM------VVDVQGLDADFLVASSHKMCGPTG--IGFLF 281 (458)
Q Consensus 213 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~------~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~ 281 (458)
++++|+||||.+++ +++|+++|++++++|+.|++|..... +..+......+++.|+||.|+.+| +||++
T Consensus 171 ~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~ 250 (395)
T d1xi9a_ 171 AVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMY 250 (395)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEE
T ss_pred EecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeE
Confidence 99999999999999 67899999999999999999974322 111233345688899999998778 99988
Q ss_pred Eecc--ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 282 GKSD--LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 282 ~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
+... .+..+....... .....+.+.. ...++..++..-.+ -+++.++.+++.++.+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~-~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~ 311 (395)
T d1xi9a_ 251 FVDPENKLSEVREAIDRL-----------------ARIRLCPNTP-AQFAAIAGLTGPMD-YLKEYMKKLKERRDYIYKR 311 (395)
T ss_dssp EECTTCTTHHHHHHHHHH-----------------HHHTCCSCSH-HHHHHHHHHHSCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHh-----------------hcCCCCcCHH-HHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 7532 222211111000 0011122333 33333333331111 2567788889999999999
Q ss_pred HhcCCCEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCC
Q 012718 360 LLSIPNIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNT 436 (458)
Q Consensus 360 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t 436 (458)
|++++++.+..+.. +.++|++++. .+..+++..+.+++||.+.||..+... .++++||+++ .+
T Consensus 312 L~~~~~~~~~~p~g------g~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~------~~~~~Ris~~--~~ 377 (395)
T d1xi9a_ 312 LNEIPGISTTKPQG------AFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEY------GAGHFRAVFL--PP 377 (395)
T ss_dssp HHTSTTEECCCCCB------SSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGG------GTTBEEEECC--SC
T ss_pred HHhCCCceecCCCe------eEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCC------CCCEEEEEec--CC
Confidence 99987777655441 5578888863 356677777665559999999855332 1679999997 68
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012718 437 KEDVDEFIHALNETVSF 453 (458)
Q Consensus 437 ~~di~~l~~~l~~~~~~ 453 (458)
.+++++.+++|.+++++
T Consensus 378 ~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 378 IEILEEAMDRFEKFMKE 394 (395)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 89999999999999874
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-30 Score=254.06 Aligned_cols=383 Identities=12% Similarity=0.015 Sum_probs=279.2
Q ss_pred CCCccchhhhhcCCCCcccccccCCCCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHH
Q 012718 41 STDSVSLGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKV 120 (458)
Q Consensus 41 ~~~~~~~~~~~r~~f~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 120 (458)
..+.....+.+++++. ++ +....+|....++.+++.+.+.+.+++. .|.. .....+...+...++.+.+
T Consensus 34 ~~~~~~~~~~i~d~l~-~d-----g~~~~n~asf~~t~~~~~~~~l~~~~~~---~N~~--~~~~~P~~~~lE~~~v~~l 102 (450)
T d1pmma_ 34 EMRDDVAFQIINDELY-LD-----GNARQNLATFCQTWDDENVHKLMDLSIN---KNWI--DKEEYPQSAAIDLRCVNMV 102 (450)
T ss_dssp CCCHHHHHHHHHHHGG-GS-----CCGGGBCSCCSCCCCCHHHHHHHHHTTT---CBTT--CTTTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-cC-----CCccccccccccCCCCHHHHHHHHHHHh---cCCC--CcccCccHHHHHHHHHHHH
Confidence 3344455667776653 32 2233566666677888888888777643 3432 2222345677778899999
Q ss_pred HHHcCCCCCC----cEEEeCChhHHHHHHHHHcCCC--------CCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 121 AAFINASDSG----EIVFTKNATEAINLVAYSWGLS--------NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 121 a~~~g~~~~~----~v~~t~g~t~a~~~~~~~l~~~--------~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
++++|++... ..++|+|+|+|+.+++.+.+.+ .......++++...|. +|.++|+..|++++.|
T Consensus 103 a~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~----s~~Kaa~~~gi~~~~v 178 (450)
T d1pmma_ 103 ADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQI----CWHKFARYWDVELREI 178 (450)
T ss_dssp HHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCH----HHHHHHHHTTCEEEEC
T ss_pred HHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHH----HHHHHHHHcCCCceEe
Confidence 9999997431 3699999999999998875321 0112235777776666 7799999999999999
Q ss_pred eCCC-CCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHH------HhcCcEEEEeccccCCcccCCCC----
Q 012718 189 NLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS------HDVGAKVLVDACQSVPHMVVDVQ---- 257 (458)
Q Consensus 189 ~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~------~~~~~~vivD~a~~~g~~~~~~~---- 257 (458)
++++ ++.+|+++|++++++++.+|+.+.++|.||.+.|+++|.++| +++|+|++||++++.+..++...
T Consensus 179 ~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~ 258 (450)
T d1pmma_ 179 PMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVW 258 (450)
T ss_dssp CCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC
T ss_pred eecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhh
Confidence 9986 499999999999999999999999999999999988777775 56899999999998776544322
Q ss_pred ---CCCCcEEEecccCC-CCCCceeEEEEecccccc-CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHH
Q 012718 258 ---GLDADFLVASSHKM-CGPTGIGFLFGKSDLLSA-MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGA 332 (458)
Q Consensus 258 ---~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 332 (458)
-.++|++++|+||+ ++|.|+|+++++++..-. ...... .+... .+ ......++.+...+.++..
T Consensus 259 ~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~-------~yl~~-~~---~~~~~~~sr~~~~~~~~~~ 327 (450)
T d1pmma_ 259 DFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNV-------DYLGG-QI---GTFAINFSRPAGQVIAQYY 327 (450)
T ss_dssp STTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEE-------EETTE-EE---EECCSCCSCBSHHHHHHHH
T ss_pred hhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhccccc-------CcCCC-Cc---CCCcccCccchHHHHHHHH
Confidence 23599999999995 569999999998764211 111100 01000 00 0111235556667777888
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC-----CCChHHHHHHHhhhcCeEe
Q 012718 333 AIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-----NIHPTDIATLLDQQYGVAT 407 (458)
Q Consensus 333 al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~l~~~~gi~~ 407 (458)
.+..+...|+.++.++..+++++|.+.|++.+++++..+... ..+.++|+|++. +.+..++.+.|.++ |..+
T Consensus 328 ~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p--~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~-Gw~v 404 (450)
T d1pmma_ 328 EFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRP--DEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQV 404 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCT--TTBSSEEEEEECTTCCCSSCHHHHHHHHHTT-TCBC
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCC--CCceEEEEEecCCcccCCCCHHHHHHHHHHc-CCee
Confidence 889999889999999999999999999999999998765422 244678999985 35677899999988 9776
Q ss_pred ccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 408 RSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 408 ~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
...... + .......+|+++...+|.+++|+|++.|+++++++++.
T Consensus 405 ~~~~~p--~---~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~~ 449 (450)
T d1pmma_ 405 PAFTLG--G---EATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDH 449 (450)
T ss_dssp CEEECC--T---TCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred eccCcC--C---CcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 422111 0 11224579999999899999999999999999998764
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.98 E-value=3.3e-31 Score=257.70 Aligned_cols=342 Identities=15% Similarity=0.150 Sum_probs=243.7
Q ss_pred CeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCChh
Q 012718 67 KLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKNAT 139 (458)
Q Consensus 67 ~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~~~v~~t~g~t 139 (458)
+.|.|..|.+. ++|+.+.+++.+.+....... .+|....+..++|+++|+++ |.+ +.++|++|+|++
T Consensus 27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~------~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~ 100 (418)
T d2r5ea1 27 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLA------NQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAY 100 (418)
T ss_dssp CCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGG------GSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHH
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhCCCccC------cCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCc
Confidence 56888888766 567889999988875422111 11222233345666666654 554 335899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC----------CCCCHHHHHHhhcCCc
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD----------ESPDLDKLKEMLSRKT 209 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~----------~~~d~~~l~~~l~~~~ 209 (458)
+|+.+++.++ +++||.|++++|+|+. +...+...|.+++.++++++ +..+.+.+.+....++
T Consensus 101 ~al~~~~~~l----~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (418)
T d2r5ea1 101 EALYATIQGH----VDEGDEVIIIEPFFDC----YEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKT 172 (418)
T ss_dssp HHHHHHHHHH----CCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTE
T ss_pred hhhhhhhhhc----cccccceeccccccch----hhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccc
Confidence 9999999998 7899999999999994 46667778999999998754 2457788888888899
Q ss_pred eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc-------CCCC-CCCCcEEEecccCCCCCCc--
Q 012718 210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-------VDVQ-GLDADFLVASSHKMCGPTG-- 276 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-------~~~~-~~~~d~~~~s~~K~~gp~g-- 276 (458)
+++++++++||||.+++ +++|+++|+++|++||+|++|...... ..+. ..+..+++.|+||.++.+|
T Consensus 173 ~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlR 252 (418)
T d2r5ea1 173 KMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWK 252 (418)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGC
T ss_pred cceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcc
Confidence 99999999999999999 667999999999999999999743321 1121 2235688889999888667
Q ss_pred eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH-----hCHHHHHHHHHH
Q 012718 277 IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST-----IGMQKIHAYEME 351 (458)
Q Consensus 277 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~-----~g~~~~~~~~~~ 351 (458)
+||+++++++++.+...... ...+.++..+.+++......... .-+.+++++++.
T Consensus 253 iG~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 312 (418)
T d2r5ea1 253 IGWAYGPEALLKNLQMVHQN--------------------CVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMA 312 (418)
T ss_dssp CEEEESCHHHHHHHHHHHTT--------------------TTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhcccc--------------------cccccccchhhhccccccccccccccchhhHHHHHHHHHH
Confidence 99999999887665432210 11223333333332222211111 115678888899
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-------------CChHHHHHHHhhhcCeEeccCCCCChhhH
Q 012718 352 LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-------------IHPTDIATLLDQQYGVATRSGHHCAQPLH 418 (458)
Q Consensus 352 l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------~~~~~~~~~l~~~~gi~~~~g~~~~~~~~ 418 (458)
.++.+.+.|+++ |+++..|.. +.++|+++++ .+..++++.|.+++||.+.||..|.....
T Consensus 313 ~r~~l~~~L~~~-g~~~~~P~g------g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~ 385 (418)
T d2r5ea1 313 KRDYMASFLAEV-GMNPTVPQG------GYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPN 385 (418)
T ss_dssp HHHHHHHHHHHT-TCEEEECSB------SSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGG
T ss_pred hhhhHHhhHhhc-CCcccCCCc------eeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCC
Confidence 999999999998 888876652 4588887742 24567888877666999999986543322
Q ss_pred hhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 419 RYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 419 ~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
...| ++++|||+. .+++++++.+++|++++.
T Consensus 386 ~~~g-~~~iRis~~--~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 386 KHLG-EDFVRYCFF--KKDENLQKAAEILRKWKG 416 (418)
T ss_dssp HHHH-TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred ccCC-CCEEEEEec--CCHHHHHHHHHHHHHHHc
Confidence 1111 579999997 588999999999998764
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.98 E-value=6.8e-31 Score=253.46 Aligned_cols=337 Identities=12% Similarity=0.097 Sum_probs=236.4
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNA 138 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~v~~t~g~ 138 (458)
|++++.|..|... ++|+.+.+++.+.+++.. + + +. .+. .++|+++|+++ |.+ ..++|++|+|+
T Consensus 30 g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~---~-~-Y~--~g~----~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~ 98 (394)
T d1c7na_ 30 GNEVVPLSVADMEFKNPPELIEGLKKYLDETV---L-G-YT--GPT----EEYKKTVKKWMKDRHQWDIQTDWIINTAGV 98 (394)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCC---C-S-SB--CCC----HHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhCCC---c-C-CC--CCC----HHHHHHHHHHHHHhcCCCCCCcceEeeccc
Confidence 5678888887766 778999999999887521 1 1 11 111 24666666665 544 22499999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC---CCCCHHHHHHhhc-CCceEEEE
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD---ESPDLDKLKEMLS-RKTKLVVI 214 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~---~~~d~~~l~~~l~-~~~~~v~~ 214 (458)
++++.+++.++ +++||.|+++.|.|+ ++.......|.+.+.++.... +.+|.+.++..+. ++++++++
T Consensus 99 ~~al~~~~~~~----~~pgd~vi~~~p~~~----~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l 170 (394)
T d1c7na_ 99 VPAVFNAVREF----TKPGDGVIIITPVYY----PFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (394)
T ss_dssp HHHHHHHHHHH----CCTTCEEEECSSCCT----HHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred hhhhhhhhccc----cccccccccccCccc----chhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEe
Confidence 99999999998 899999999999998 456666777888888876532 4578888887764 47899999
Q ss_pred ecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc----CC---C--CCCCCcEEEecccCCCCCCc--eeEE
Q 012718 215 HHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV----VD---V--QGLDADFLVASSHKMCGPTG--IGFL 280 (458)
Q Consensus 215 ~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~----~~---~--~~~~~d~~~~s~~K~~gp~g--~G~l 280 (458)
++|+||||.+++ +++|+++|++++++||+|++|.--... .. . ......+++.|+||.++..| +|++
T Consensus 171 ~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~ 250 (394)
T d1c7na_ 171 CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI 250 (394)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE
T ss_pred cccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccc
Confidence 999999999999 667899999999999999999732210 00 0 01135688889999888777 8888
Q ss_pred EEecccc-ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012718 281 FGKSDLL-SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYEN 359 (458)
Q Consensus 281 ~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 359 (458)
++++..+ +.+...... ...++....+..+.........+ ..+++.+..++..+.+.+.
T Consensus 251 ~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 309 (394)
T d1c7na_ 251 IIKNPDIRERFTKSRDA--------------------TSGMPFTTLGYKACEICYKECGK-WLDGCIKVIDKNQRIVKDF 309 (394)
T ss_dssp ECCCHHHHHHHHHHHHH--------------------TTCCCCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cccChhhhhhhhhhhhh--------------------ccccccccccchhhhhhhcchhh-hhcccccccchhhhhhhhh
Confidence 8877543 333221110 00122233233333222222222 2566677777777788777
Q ss_pred Hhc-CCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCC
Q 012718 360 LLS-IPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNT 436 (458)
Q Consensus 360 L~~-~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t 436 (458)
++. .+++++..+. .+.++|++++ +.+..++++.|.+++||.+.||+.+... .++++|||++ .+
T Consensus 310 l~~~~~~~~~~~p~------g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~------~~~~iRis~~--~~ 375 (394)
T d1c7na_ 310 FEVNHPEIKAPLIE------GTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDG------GIGFERINLA--AP 375 (394)
T ss_dssp HHHHCTTSBCCCCS------BSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGG------GTTEEEEECC--SC
T ss_pred hhccccceeecCCC------ceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCC------CCCEEEEEEe--CC
Confidence 764 3466554443 1457888887 4578899998876669999999865332 2679999997 68
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 012718 437 KEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 437 ~~di~~l~~~l~~~~~~~~ 455 (458)
++++++.+++|.+++++++
T Consensus 376 ~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 376 SSVIQESLERLNKALKDLK 394 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 8999999999999998874
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=3.7e-31 Score=253.92 Aligned_cols=328 Identities=17% Similarity=0.192 Sum_probs=239.6
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCC-CCcEEEeCCh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASD-SGEIVFTKNA 138 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~-~~~v~~t~g~ 138 (458)
|+++|.|..|... ++|+.+.+++.+.+.+.. . +|....+..++|+++++++ |.+. .+++++|+|+
T Consensus 27 G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~-------~--~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~ 97 (375)
T d1o4sa_ 27 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-------V--KYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGA 97 (375)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-------C--CCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHH
T ss_pred CCCeEECCCcCCCCCCCHHHHHHHHHHHhcCC-------c--CCCCCcCCHHHHHHHHhhhhhccccccccccccccCcH
Confidence 5678999988776 678888999888765311 0 0111223346666666655 4332 2499999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhcCCceEEEEec
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLSRKTKLVVIHH 216 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~v~~~~ 216 (458)
++|+..++.++ +++||.|++++|.|+.. .......|.....++.+++ +.+|.+.++....++++++++++
T Consensus 98 ~~al~~~~~~l----~~~gd~vlv~~P~y~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n 169 (375)
T d1o4sa_ 98 KQALFNAFMAL----LDPGDEVIVFSPVWVSY----IPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINS 169 (375)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEES
T ss_pred HHHHHHHHHHH----hCCCCEEEEccCccccc----hhhhhccccccccccccccccccchhHHHHHhhccCccEEEEeC
Confidence 99999999998 78999999999999954 4445566888888887743 66788999888888999999999
Q ss_pred ccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcccC------C-CCCCCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 217 ISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVV------D-VQGLDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 217 ~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~------~-~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
|+||||.+++ +++|+++|++|+++||+|++|....... . .+..+..++++|+||.++.+| +||++.++
T Consensus 170 P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~ 249 (375)
T d1o4sa_ 170 PNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 249 (375)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccc
Confidence 9999999999 6788899999999999999988443211 1 234567899999999998777 99999998
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
+.++.+......+ ......... ..+...+.. ......+.+++..+.+.+.|++.
T Consensus 250 ~~~~~~~~~~~~~---------------------~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~r~~~~~~~l~~~- 303 (375)
T d1o4sa_ 250 KVATAVSKIQSHT---------------------TSCINTVAQ---YAALKALEV-DNSYMVQTFKERKNFVVERLKKM- 303 (375)
T ss_dssp HHHHHHHHHHHHH---------------------TCSCCHHHH---HHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cchhhhhhhhccc---------------------cccccccch---hhhhhhccc-chhhhHHHHHHHHHHHHHHHHhc-
Confidence 8766554222111 111222111 122222222 35566778888889999999887
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFI 444 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~ 444 (458)
|+++..+. .+.++|+++++ +..+++..+.+++||.+.||..| +.++++||+++ .+++++++++
T Consensus 304 g~~~~~p~------gg~f~~~~~~~-~~~~~~~~ll~~~gV~v~pG~~F--------~~~g~iRis~~--~~~e~l~~al 366 (375)
T d1o4sa_ 304 GVKFVEPE------GAFYLFFKVRG-DDVKFCERLLEEKKVALVPGSAF--------LKPGFVRLSFA--TSIERLTEAL 366 (375)
T ss_dssp TCCCCCCS------BSSEEEEECSS-CHHHHHHHHHHHHCEECEEGGGG--------TCTTEEEEECC--SCHHHHHHHH
T ss_pred CceEecCC------ccEEEEEECCC-CHHHHHHHHHHhCCEEEEEcccc--------CCCCeEEEEEc--CCHHHHHHHH
Confidence 87775543 15589999987 45566666554449999999743 45789999997 6889999999
Q ss_pred HHHHHHHH
Q 012718 445 HALNETVS 452 (458)
Q Consensus 445 ~~l~~~~~ 452 (458)
++|+++++
T Consensus 367 ~rl~~~l~ 374 (375)
T d1o4sa_ 367 DRIEDFLN 374 (375)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999875
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.97 E-value=4.2e-30 Score=244.52 Aligned_cols=321 Identities=15% Similarity=0.161 Sum_probs=233.4
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.+++.|+.+.+. ++|+.+.+++.+....+..+|+.+ ..++|+++|+++|.+++ +|++++|+++++.+
T Consensus 22 ~~~idls~~~np~~~p~~~~~a~~~~~~~~~~Yp~~~-----------~~~Lr~aia~~~~v~~~-~I~~~~g~~~~~~~ 89 (355)
T d1lc5a_ 22 DQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDAD-----------YFHLHQALARHHQVPAS-WILAGNGETESIFT 89 (355)
T ss_dssp GGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCCTT-----------CHHHHHHHHHHHTSCGG-GEEEESSHHHHHHH
T ss_pred hheEEccCCCCCCCCCHHHHHHHHHHHHHhccCCCCC-----------hHHHHHHHHHHhCCCHH-HEEecccHHHHHHH
Confidence 367888877443 578889999988776654444321 13799999999999876 99999999999998
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLAS 223 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~ 223 (458)
++..+ .++.+++..|.|.. +.......+++++.++++.+ +....+.+.+.+.++++++++++|+||||.
T Consensus 90 ~~~~~------~~~~~~v~~p~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~ 159 (355)
T d1lc5a_ 90 VASGL------KPRRAMIVTPGFAE----YGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGL 159 (355)
T ss_dssp HHHHH------CCSEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCC
T ss_pred HHhhh------ccccccccCCccce----eccccccccccceeeeeeccCCccceeeeeeccccccceeeeecccCcccc
Confidence 88766 34455566677763 34555566889999998743 322335677778889999999999999999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccCCCCCCc--eeEEEEecccc-ccCCC
Q 012718 224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLL-SAMPP 292 (458)
Q Consensus 224 ~~~---l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~-~~l~~ 292 (458)
.++ +++|+++|+++++++++|++|..... .......+..+++.|+||.+|.+| +||++++++.+ +.+..
T Consensus 160 ~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~ 239 (355)
T d1lc5a_ 160 LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRR 239 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHH
T ss_pred cchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHHHHh
Confidence 999 66888889999999999999973211 111334456789999999999777 89999987643 22221
Q ss_pred ccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 293 FLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
... ..+.+.....++.++++.... +.+.++++++..+++.+.|.+++++++....
T Consensus 240 ~~~-----------------------~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~ 294 (355)
T d1lc5a_ 240 QQM-----------------------PWSVNALAALAGEVALQDSAW--QQATWHWLREEGARFYQALCQLPLLTVYPGR 294 (355)
T ss_dssp HSC-----------------------TTCSCHHHHHHHHHGGGCHHH--HHHHHHHHHHHHHHHHHHHHTSTTEEECCCS
T ss_pred hcC-----------------------Cccccccccccccccccccch--hHHHHHHHHHHHHHHHHHHhhcCCcEECCCC
Confidence 111 123344444444444443222 5566778888889999999999898875332
Q ss_pred CCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
++++++.++. +..++.+.|.++ ||.++++..+.. ..++++|||++ +++|+++++++|++++
T Consensus 295 -------~~f~~~~~~~-~~~~~~~~L~~~-gv~vr~~~~f~~------~~~~~iRis~~---~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 295 -------ANYLLLRCER-EDIDLQRRLLTQ-RILIRSCANYPG------LDSRYYRVAIR---SAAQNERLLAALRNVL 355 (355)
T ss_dssp -------SSEEEEEESC-TTCCHHHHHHTT-TEECEECTTSTT------CCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred -------CEEEEEECCC-CHHHHHHHHHHC-CcEEEeCccCCC------CCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 6788999875 556789999988 999998764421 12689999987 7899999999999874
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.4e-29 Score=239.83 Aligned_cols=329 Identities=13% Similarity=0.145 Sum_probs=227.5
Q ss_pred CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-CCCcEEEeCChhHHHHHHHHHcCCCCCCC
Q 012718 78 QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-DSGEIVFTKNATEAINLVAYSWGLSNLKS 156 (458)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~a~~~~~~~l~~~~~~~ 156 (458)
+.|+.+.+++.+.+.... .......+ .+..+.+.+.+++.+|.+ ..++|++|+|+++++..++.++ +++
T Consensus 12 ~~p~~i~eal~~~~~~~~---~~Y~~~~g---~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l----~~~ 81 (361)
T d1d2fa_ 12 ATAPCIIEALNQRLMHGV---FGYSRWKN---DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW----SET 81 (361)
T ss_dssp CCCHHHHHHHHHHHTTCC---CCCCCSCC---HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS----SCT
T ss_pred CCCHHHHHHHHHHHhCCC---CCCCCCCC---HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhc----ccc
Confidence 667889999988875311 10111111 233444555555555664 2249999999999999999998 789
Q ss_pred CCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC---CCCCCHHHHHHhhcC-CceEEEEecccCcCccccc---HHH
Q 012718 157 GDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND---DESPDLDKLKEMLSR-KTKLVVIHHISNMLASILP---IEE 229 (458)
Q Consensus 157 g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~---~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~---l~~ 229 (458)
||+|++++|+|.. +..+.+..|.+++.++.+. ++.+|++.+++.+.+ +++++++++++||||.+++ +++
T Consensus 82 gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~ 157 (361)
T d1d2fa_ 82 GEGVVIHTPAYDA----FYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEI 157 (361)
T ss_dssp TCEEEEEESCCHH----HHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred ccccccccccccc----hhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhh
Confidence 9999999999984 4566667799998888753 245799999998855 7899999999999999998 778
Q ss_pred HHHHHHhcCcEEEEeccccCCcc----cCCC--CCCCCcEEEecccCCCCCCc--eeEEEEecccc-cc-CCCccccCcc
Q 012718 230 IVHWSHDVGAKVLVDACQSVPHM----VVDV--QGLDADFLVASSHKMCGPTG--IGFLFGKSDLL-SA-MPPFLGGGEM 299 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~~g~~----~~~~--~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~-~~-l~~~~~g~~~ 299 (458)
|+++|+++|+++|+|++|..... +..+ ...+..+++.|++|.++.+| +||+++..... .. +.....
T Consensus 158 i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~---- 233 (361)
T d1d2fa_ 158 MADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKG---- 233 (361)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHT----
T ss_pred hhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhhhccc----
Confidence 99999999999999999984221 1111 12235678889999777655 89988765321 11 111100
Q ss_pred eEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCCCcCc
Q 012718 300 ISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS-IPNIRIYGPKPSEHVQ 378 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~ 378 (458)
....++++...+.+...++...... .++.+...+++++.+.+.+.+ .+++.+..+.
T Consensus 234 ----------------~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~------ 290 (361)
T d1d2fa_ 234 ----------------RDGLSSPSVLALTAHIAAYQQGAPW-LDALRIYLKDNLTYIADKMNAAFPELNWQIPQ------ 290 (361)
T ss_dssp ----------------TSCCCSCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS------
T ss_pred ----------------ccccccchhhhHHHHHHHhhccchh-hhcccccchhhHHHHHHHhhhhcccccccccC------
Confidence 1112345554444443344433222 455666666777777666543 3466555443
Q ss_pred cccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 379 RAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 379 ~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.+.++|++++ +.+..++++.|.+++||.+.||+.+... .++++|+|++ .+++++++.+++|.+++++++
T Consensus 291 gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~------~~~~vRis~~--~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 291 STYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEE------GRGFVRLNAG--CPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp BCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGG------GTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred ceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCC------CCCEEEEEEc--CCHHHHHHHHHHHHHHHHhcC
Confidence 1457888875 5788899998877669999999855432 2578999987 588999999999999998864
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=9.5e-30 Score=241.86 Aligned_cols=281 Identities=15% Similarity=0.176 Sum_probs=208.4
Q ss_pred HHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC-EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC
Q 012718 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD-EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD 193 (458)
Q Consensus 115 ~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~-~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~ 193 (458)
++|+++|+++|++++ +|++|+|+++++.+++.++ .++|| .|+++.|+|. .+...++..|.+++.++.+++
T Consensus 60 ~Lr~~ia~~~gv~pe-~I~it~Gs~eai~~~~~~~----~~pgd~~Vl~~~P~y~----~~~~~~~~~g~~v~~~~~~~~ 130 (354)
T d1fg7a_ 60 AVIENYAQYAGVKPE-QVLVSRGADEGIELLIRAF----CEPGKDAILYCPPTYG----MYSVSAETIGVECRTVPTLDN 130 (354)
T ss_dssp HHHHHHHHHHTSCGG-GEEEESHHHHHHHHHHHHH----CCTTTCEEEECSSSCT----HHHHHHHHHTCEEEECCCCTT
T ss_pred HHHHHHHHHhCCChH-HeeeccCchHHHHHHHHHh----hccccccccccccccc----cchhhhhccCceeeccccccc
Confidence 799999999999986 9999999999999999998 78998 6888999998 456667778999999999888
Q ss_pred CCCCHHHHHHhhcCCceEEEEecccCcCcccccHH---HHHHHHHhcCcEEEEeccccCCc----ccCCCCCCCCcEEEe
Q 012718 194 ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE---EIVHWSHDVGAKVLVDACQSVPH----MVVDVQGLDADFLVA 266 (458)
Q Consensus 194 ~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~---~i~~l~~~~~~~vivD~a~~~g~----~~~~~~~~~~d~~~~ 266 (458)
+.+|++.+++.+ .+++++++++++||||.+++.+ .+.+.++ ++.++++|+++.-.. .+.........+++.
T Consensus 131 ~~~d~~~l~~~~-~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~ 208 (354)
T d1fg7a_ 131 WQLDLQGISDKL-DGVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILR 208 (354)
T ss_dssp SCCCHHHHHTSC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred cccchhhhhhcc-cccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccccccchhhcccccceEEe
Confidence 899999998877 4789999999999999999954 4444444 566677777765211 111233445678889
Q ss_pred cccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 267 SSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 267 s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
|+||.||.+| +||++.++++++.+...... ...+......+.+++..-.......
T Consensus 209 S~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~-----------------------~~~~~~~~~~a~~~~~~~~~~~~~~ 265 (354)
T d1fg7a_ 209 TLSKAFALAGLRCGFTLANEEVINLLMKVIAP-----------------------YPLSTPVADIAAQALSPQGIVAMRE 265 (354)
T ss_dssp ESSSTTCCGGGCCEEEEECHHHHHHHHHHSCS-----------------------SCSCHHHHHHHHHHTSHHHHHHHHH
T ss_pred CCccccCCCccccccccccchhhhhhhhhcCc-----------------------cchhhHHHHHHHHHHhhhccccccc
Confidence 9999999778 99999999887766533221 1122222222222221111111344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 345 IHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
..+++.+.++++.+.|.+++++....+.. +++++++++ +..++.+.|.++ ||.++++..+ .+.+
T Consensus 266 ~~~~~~~~r~~l~~~l~~~~~~~~~~p~~------~~f~~~~~~--~~~~~~~~L~~~-gIlvr~~~~~-------~~~~ 329 (354)
T d1fg7a_ 266 RVAQIIAEREYLIAALKEIPCVEQVFDSE------TNYILARFK--ASSAVFKSLWDQ-GIILRDQNKQ-------PSLS 329 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTEEEECCCS------SSEEEEEET--THHHHHHHHHHT-TEECEECTTS-------TTCT
T ss_pred cchhhhhHHHHHHHHHHhCCCcceeCCCC------ceEEEEeCC--CHHHHHHHHHHC-CcEEecCCCC-------CCCC
Confidence 45667778888999999887776554432 678999987 578899999988 9999876533 1337
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 425 ASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
+++|||++ +++|+++++++|+
T Consensus 330 ~~lRisig---t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 330 GCLRITVG---TREESQRVIDALR 350 (354)
T ss_dssp TEEEEECC---CHHHHHHHHHHHH
T ss_pred CEEEEEeC---CHHHHHHHHHHHh
Confidence 89999987 7899999999886
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=2.5e-30 Score=249.28 Aligned_cols=338 Identities=14% Similarity=0.117 Sum_probs=239.6
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC-CCCcEEEeCCh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS-DSGEIVFTKNA 138 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~v~~t~g~ 138 (458)
|.++|.|+.|.+. ++|+.+.+++.+.......+ ...++..++|+++++++ |.+ ..++|++|+|+
T Consensus 27 g~~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y----------~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~ 96 (389)
T d2gb3a1 27 GVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYY----------SHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGG 96 (389)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHHHHTCCSSCCC----------CCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHhcCCCCCCC----------CCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccc
Confidence 5778999888776 56777888876543221111 12233446777777665 443 22499999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
++++..++.++ .++||.|+++.|.|+ .+...++..|+.++.++.+.+ +..+.+.+...+.++++++++++|
T Consensus 97 ~~~l~~~~~~l----~~~gd~V~i~~P~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP 168 (389)
T d2gb3a1 97 SEAILFSFAVI----ANPGDEILVLEPFYA----NYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNP 168 (389)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCT----HHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESS
T ss_pred ccccccccccc----ccCCCeEEEeCCCCc----cccccccccCccccccccccccccchhhhhhhhcccCccEEEeCCC
Confidence 99999999998 789999999999999 456667777999999998765 444556677777889999999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc-----CCCCCCCCcEEEecccCCCCCCc--eeEEEEecccc
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-----VDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLL 287 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-----~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~ 287 (458)
+||||.+++ +++|+++|++++++||+|++|..-... ......+..+++.|++|.++.+| +||++++++.+
T Consensus 169 ~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i 248 (389)
T d2gb3a1 169 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEEL 248 (389)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHH
T ss_pred CccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeeeccchhH
Confidence 999999999 778999999999999999999732211 01112346788889999887777 99999977543
Q ss_pred ccCC-CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Q 012718 288 SAMP-PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNI 366 (458)
Q Consensus 288 ~~l~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~ 366 (458)
.... ....+ ..+++..+..+....+..... -++.++++.+++++.+.+.|+++++.
T Consensus 249 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~ 305 (389)
T d2gb3a1 249 ISHAMKLAQG----------------------RLAPPLLEQIGSVGLLNLDDS-FFDFVRETYRERVETVLKKLEEHGLK 305 (389)
T ss_dssp HHHHHHHHHH----------------------SCCCCHHHHHHHHHHHTCCHH-HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhhhhhc----------------------cccccccccccccccccccch-hcccccccccccchhhhhhhhhhccc
Confidence 3221 11110 123444444444444332222 26778888899999999999988444
Q ss_pred EEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhh-----cCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 367 RIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQ-----YGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-----~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
.+..+. .+.++|++++..+..++.+.|.++ .||.+.||..+.... .. .++++||++. .++++++
T Consensus 306 ~~~~p~------~g~~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~--~~-~~~~iRis~~--~~~~~l~ 374 (389)
T d2gb3a1 306 RFTKPS------GAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTP--GL-GKKEIRIACV--LEKDLLS 374 (389)
T ss_dssp CBCCCS------BSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSST--TT-TSSEEEEECC--SCHHHHH
T ss_pred cccCCC------ceEEEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCC--CC-CCCEEEEEEc--CCHHHHH
Confidence 443333 266899999887888888887643 266777776432210 00 1579999987 6889999
Q ss_pred HHHHHHHHHHHhh
Q 012718 442 EFIHALNETVSFF 454 (458)
Q Consensus 442 ~l~~~l~~~~~~~ 454 (458)
+.+++|.++++++
T Consensus 375 ~a~~~L~~~lk~f 387 (389)
T d2gb3a1 375 RAIDVLMEGLKMF 387 (389)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=1.4e-30 Score=253.60 Aligned_cols=343 Identities=15% Similarity=0.174 Sum_probs=233.9
Q ss_pred CCCeEEecCCCCCC---CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC--CCCcEEEe
Q 012718 65 SKKLVYLDNAATSQ---KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFT 135 (458)
Q Consensus 65 ~~~~i~l~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~~~v~~t 135 (458)
++++|.|..|.+.+ +++.+.+++.+.++...... .+|...++..++|+++|+++ |.+ +.++|++|
T Consensus 37 ~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it 110 (420)
T d1vp4a_ 37 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYT------LQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFT 110 (420)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHH------TSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEE
T ss_pred CCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccc------cCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEec
Confidence 47899998876542 34555566666655421111 11122333446667666665 443 23499999
Q ss_pred CChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc---------
Q 012718 136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS--------- 206 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~--------- 206 (458)
+|+++++.+++.++ +++||.|++++|.|+ .+...++..|++++.++.++++ +|++.++..+.
T Consensus 111 ~G~~~al~~~~~~~----~~~Gd~Vlv~~P~y~----~~~~~~~~~g~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 181 (420)
T d1vp4a_ 111 VGSQQALDLIGKLF----LDDESYCVLDDPAYL----GAINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIK 181 (420)
T ss_dssp EHHHHHHHHHHHHH----CCTTCEEEEEESCCH----HHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGG
T ss_pred cchhhhHHHHHHhh----hcccccccccccccc----chhHHHHHHhhhcccccccccc-cccchhhhhhhhhHHHhhcc
Confidence 99999999999998 789999999999999 4566677789999999987654 47777655432
Q ss_pred CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc-------CCCCCCCCcEEEecccCCCCCCc
Q 012718 207 RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-------VDVQGLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 207 ~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-------~~~~~~~~d~~~~s~~K~~gp~g 276 (458)
..+.++++++++||||.+++ +++|+++|+++++++|+|++|..-... ......+..++++|++|+++ +|
T Consensus 182 ~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~-~G 260 (420)
T d1vp4a_ 182 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PG 260 (420)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GG
T ss_pred ccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccc-cc
Confidence 23467779999999999998 678999999999999999999732210 01122346677888888776 45
Q ss_pred --eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH------HHHHhCHHHHHHH
Q 012718 277 --IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID------YLSTIGMQKIHAY 348 (458)
Q Consensus 277 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~~~~~~~ 348 (458)
+||++.++++++.+...... +..+++...+..++ ..++ ++... .+.++++
T Consensus 261 ~RiG~~~~~~~~i~~l~~~~~~--------------------~~~~~~~~~q~~~a-~~l~~~~~~~~~~~~-~~~~~~~ 318 (420)
T d1vp4a_ 261 LRIGMVAGSKEFIRKIVQAKQS--------------------ADLCSPAITHRLAA-RYLERYDLLEQLKPT-IELYRRK 318 (420)
T ss_dssp GCEEEEECCHHHHHHHHHHHHH--------------------HHSSCCHHHHHHHH-HHHHHSCHHHHTHHH-HHHHHHH
T ss_pred cccccccccchhhhhhhhhhhh--------------------ccccCchhhhhhhh-hhcccccccccchhH-HHHhhhh
Confidence 99999999887766533221 11233333333332 2222 11111 2334444
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeE
Q 012718 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASA 427 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~l 427 (458)
...+.+.|.+.+.+.+++++..+.. +.++|++++ +.+..++.+.|.++ ||.+.||+.|...- ...+++
T Consensus 319 ~~~~~~~L~~~~~~~~g~~~~~p~g------g~f~~~~~~~~~d~~~~~~~l~~~-gV~v~PG~~F~~~~----~~~~~i 387 (420)
T d1vp4a_ 319 RTVMLNALEEYFSDIPGVKWVKSEG------GLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYD----EPSPSM 387 (420)
T ss_dssp HHHHHHHHHHHSTTSTTCEECCCSB------SSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTC----CCCSEE
T ss_pred cccchhhhhhhhccCCCcEEecCCc------eEEEEEECCCCCCHHHHHHHHHHC-CeEEEechhhCCCC----CCCCEE
Confidence 4455555666666778999876652 558999997 45777888999988 99999998553221 125799
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 428 RASLHFYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 428 Ris~~~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
|||++. .+++++++.+++|.+++++.++.
T Consensus 388 Rls~~~-~~~e~l~~a~~rL~~~l~~~~~~ 416 (420)
T d1vp4a_ 388 RLSFCL-PPDEKIVEGIKRLREVVLEYGKE 416 (420)
T ss_dssp EEECSS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCc-CCHHHHHHHHHHHHHHHHHhhHh
Confidence 999974 58899999999999999987653
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.3e-30 Score=247.30 Aligned_cols=342 Identities=13% Similarity=0.135 Sum_probs=242.8
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCCC--CCcEEEeCC
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NASD--SGEIVFTKN 137 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~--~~~v~~t~g 137 (458)
+.++|.|..|.+. ++|+.+.+++.+.+.... ...+|....+..++|+++++++ |.+- .++|++|+|
T Consensus 24 ~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~-------~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G 96 (418)
T d1w7la_ 24 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF-------MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVG 96 (418)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTSSCG-------GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESH
T ss_pred CCCCEECCCCCCCCCCCHHHHHHHHHHHhCCC-------cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccC
Confidence 3678999998876 668888898888765310 0011122233345666666654 6653 248999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCC------------CCCCCHHHHHHhh
Q 012718 138 ATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLND------------DESPDLDKLKEML 205 (458)
Q Consensus 138 ~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~------------~~~~d~~~l~~~l 205 (458)
+++++.+++.++ +++|+.|++++|.|+ .+...+...|++++.++..+ ++.+|.+++....
T Consensus 97 ~~~al~~~~~~l----~~~g~~vlv~~p~~~----~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 168 (418)
T d1w7la_ 97 GYGALFTAFQAL----VDEGDEVIIIEPFFD----CYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF 168 (418)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEEESCCT----THHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHC
T ss_pred cHHHHHHHHHhh----ccCCceeeccccccc----hhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhccc
Confidence 999999999999 789999999999999 45666777899998888653 2346777788888
Q ss_pred cCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc----cc---CCCCCC-CCcEEEecccCCCCC
Q 012718 206 SRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH----MV---VDVQGL-DADFLVASSHKMCGP 274 (458)
Q Consensus 206 ~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~----~~---~~~~~~-~~d~~~~s~~K~~gp 274 (458)
.++++++++++++||||.+++ +++|+++|++++++||+|++|..-. .+ ..+... +..+++.|+||.++.
T Consensus 169 ~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 248 (418)
T d1w7la_ 169 TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSA 248 (418)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTC
T ss_pred cccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccC
Confidence 889999999999999999998 6789999999999999999997321 11 123222 357889999998776
Q ss_pred Cc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHH------hCHHHHH
Q 012718 275 TG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLST------IGMQKIH 346 (458)
Q Consensus 275 ~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~------~g~~~~~ 346 (458)
+| +||+++++++++.+..... ......+.....++..++..... .-+...+
T Consensus 249 pG~RvG~~v~~~~~~~~l~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 307 (418)
T d1w7la_ 249 TGWKVGWVLGPDHIMKHLRTVHQ---------------------NSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFP 307 (418)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHH---------------------TTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHH
T ss_pred CCCcccccccchhhhhhhccccc---------------------cccccccchhhHHHHHHhhhccccccccccccccch
Confidence 66 9999999987766654322 11122333333333344432221 1245677
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC--------------CChHHHHHHHhhhcCeEeccCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN--------------IHPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------~~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
++++++++.+.+.|++. |+++..|.. +.++|+++++ .+..++++.|.+++||.+.||+.
T Consensus 308 ~~~~~~r~~l~~~L~~~-g~~~~~P~g------g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~ 380 (418)
T d1w7la_ 308 QAMQRCRDHMIRSLQSV-GLKPLIPQG------SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSI 380 (418)
T ss_dssp HHHHHHHHHHHHHHHTT-TCEEEECSB------SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGG
T ss_pred hhhhhhhhhhhhhhhhc-CCcccCCCc------eeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchh
Confidence 88888999999999987 888876642 5588888641 12456777776666999999986
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
+...... -+.++++|||+. .+++++++++++|+++..
T Consensus 381 F~~~~~~-~~~~~~iRis~~--~~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 381 FYSVPHQ-KHFDHYIRFCFV--KDEATLQAMDEKLRKWKV 417 (418)
T ss_dssp GSCHHHH-TTSCSEEEEECC--CCHHHHHHHHHHHHHHHC
T ss_pred hcCCCcc-CCCCCEEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 5432211 123689999987 688999999999987653
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=2.8e-29 Score=236.44 Aligned_cols=306 Identities=15% Similarity=0.152 Sum_probs=225.7
Q ss_pred CCCeEEecCCCCC-CCcHHHHHHHHHHHHHhc--cCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC--CCCcEEEeCChh
Q 012718 65 SKKLVYLDNAATS-QKPIAVLKALQNYYEAYN--SNVHRGIHFLSAKATDEYELARKKVAAFINAS--DSGEIVFTKNAT 139 (458)
Q Consensus 65 ~~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~~v~~t~g~t 139 (458)
+++.++|+.+.+. ++|+.+.+++.+.+.... .++. ....++|+++|++++.+ +.++|++|+|++
T Consensus 18 ~~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~-----------~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~ 86 (334)
T d2f8ja1 18 KRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYD-----------SPDEELIEKILSYLDTDFLSKNNVSVGNGAD 86 (334)
T ss_dssp CCCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCC-----------SSCHHHHHHHHHHHTCSSCCGGGEEEEEHHH
T ss_pred CCCceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCC-----------CCcHHHHHHHHHHhcccCCCcceEEecCcch
Confidence 4789999988665 778888888877664311 1111 12347999999998754 234899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccC
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISN 219 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 219 (458)
+++.+++. ++|+|++++|+|. .+..+++..|++++.+|+++++..+ +...++++++++++|+|
T Consensus 87 ~~l~~l~~--------~~d~v~i~~P~y~----~~~~~~~~~g~~~v~v~~~~~~~~~-----~~~~~~~~~l~l~nP~N 149 (334)
T d2f8ja1 87 EIIYVMML--------MFDRSVFFPPTYS----CYRIFAKAVGAKFLEVPLTKDLRIP-----EVNVGEGDVVFIPNPNN 149 (334)
T ss_dssp HHHHHHHH--------HSSEEEECSSCCH----HHHHHHHHHTCCEEECCCCTTSCCC-----CCCCCTTEEEEEESSCT
T ss_pred hHHHHHhh--------hcccccccccccc----ccccchhccCCcccccccccccccc-----ccccccceEEEeccccc
Confidence 99998775 3579999999998 4566777789999999998776543 23446789999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcc---cCCCCCCCCcEEEecccCCCCCCc--eeEEEEeccccccCCCcc
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHM---VVDVQGLDADFLVASSHKMCGPTG--IGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~---~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~ 294 (458)
|||.+++.+.|.++ +++++++|+|+++..... .......+..+++.|++|.++.+| +||++.++++++.+....
T Consensus 150 PtG~~~s~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~ 228 (334)
T d2f8ja1 150 PTGHVFEREEIERI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVR 228 (334)
T ss_dssp TTCCCCCHHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHS
T ss_pred ccceeecHHHhhcc-ccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhh
Confidence 99999998888775 457899999998763221 112233456789999999888777 999999998877665332
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
.. ...+.....++.+.++.... ++...+++++.++++.+.|+++ |+++..+.
T Consensus 229 ~~-----------------------~~~s~~~~~~a~~~l~~~~~--~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~-- 280 (334)
T d2f8ja1 229 LP-----------------------FNVSYVSQMFAKVALDHREI--FEERTKFIVEERERMKSALREM-GYRITDSR-- 280 (334)
T ss_dssp CT-----------------------TCSCHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHHHHHHHH-TCEECCCC--
T ss_pred cc-----------------------cccchhhhhhcccccccccc--hhhHHHHHHHHHHHHHHHHHHC-CCeECCCC--
Confidence 21 12233333333344443222 5666778888899999999988 88876443
Q ss_pred CcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 375 EHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
++++++.++..+..++.+.|.++ ||.+++. ++++|||++ +.+|+++++++|++
T Consensus 281 -----g~f~~~~~~~~~~~~~~~~L~~~-GI~vr~~-------------~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 281 -----GNFVFVFMEKEEKERLLEHLRTK-NVAVRSF-------------REGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp -----SSEEEEECCHHHHHHHHHHHHHT-TEECEEE-------------TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred -----ceEEEEECCCCCHHHHHHHHHHC-CCEECCC-------------CCeEEEEcC---CHHHHHHHHHHHhc
Confidence 67888888876778899999988 9998642 579999987 67899999998875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.97 E-value=5e-30 Score=248.40 Aligned_cols=341 Identities=13% Similarity=0.127 Sum_probs=234.0
Q ss_pred CCeEEecCCCCCC---CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----C--CCCCCcEEEeC
Q 012718 66 KKLVYLDNAATSQ---KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----N--ASDSGEIVFTK 136 (458)
Q Consensus 66 ~~~i~l~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~~v~~t~ 136 (458)
+++|.|..|-+.+ +.+.+.+++.+.+...... ..+|...++..++|+++|+++ | .+++ +|++|+
T Consensus 29 ~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~-~I~it~ 101 (403)
T d1wsta1 29 SDVISLAGGLPAPETFPVETIKKIAVEVLEEHADK------ALQYGTTKGFTPLRLALARWMEKRYDIPMSKV-EIMTVA 101 (403)
T ss_dssp SSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHH------HHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTC-EEEEES
T ss_pred CCcEECCCCCCCccccCHHHHHHHHHHHHHhCccc------ccCCCCCcCCHHHHHHHHHHHHHHhCCCCChH-Heeecc
Confidence 6789997765432 3345556666665432110 111122333457777777775 3 3444 999999
Q ss_pred ChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHH----H---hhcCCc
Q 012718 137 NATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLK----E---MLSRKT 209 (458)
Q Consensus 137 g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~----~---~l~~~~ 209 (458)
|+++++..++.++ +++||.|++++|+|+ .+...+...|++++.++.++++. +...+. + ..++.+
T Consensus 102 G~~~al~~~~~~l----~~~gd~v~~~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 172 (403)
T d1wsta1 102 GSQQALDLIGRVF----LNPGDPIVVEAPTYL----AAIQAFKYYDPEFISIPLDDKGM-RVDLLEEKLEELRKQGKRVK 172 (403)
T ss_dssp SHHHHHHHHHHHH----CCTTCEEEEEESCCH----HHHHHHHTTCCEEEEEEEETTEE-CHHHHHHHHHHHHHTTCCCC
T ss_pred cchHHHHHHHHHH----hhcCCccccCCCcch----hhhHHHhhccccceeEeecccCC-ccccccccchhhhhcccccc
Confidence 9999999999998 789999999999999 45666677899999999876543 222221 1 223355
Q ss_pred eEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCc---c---cC-CCCCCCCcEEEecccCCCCCCc--e
Q 012718 210 KLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPH---M---VV-DVQGLDADFLVASSHKMCGPTG--I 277 (458)
Q Consensus 210 ~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~---~---~~-~~~~~~~d~~~~s~~K~~gp~g--~ 277 (458)
.++++++++||||.+++ +++|+++|++||++||+|++|..-. . ++ .....+..++++|+||.++ +| +
T Consensus 173 ~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~Ri 251 (403)
T d1wsta1 173 IVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA-PGFRI 251 (403)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC-GGGCC
T ss_pred ccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceec-Ccccc
Confidence 78889999999999999 5688999999999999999997211 1 11 1334567899999999776 45 9
Q ss_pred eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH-HHHHhCHHHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID-YLSTIGMQKIHAYEMELAKYL 356 (458)
Q Consensus 278 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~-~~~~~g~~~~~~~~~~l~~~l 356 (458)
||++.++++++.+....... ....+.....+..+.+. ...+..++++++.+.+.++.+
T Consensus 252 G~~i~~~~~i~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (403)
T d1wsta1 252 GWVAAHPHLIRKMEIAKQSI---------------------DLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAM 310 (403)
T ss_dssp EEEEECHHHHHHHHHHHHHH---------------------HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhhh---------------------ccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHH
Confidence 99999988776554322110 11233323333322222 122223567777777888888
Q ss_pred HHHHhcC--CCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC
Q 012718 357 YENLLSI--PNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF 433 (458)
Q Consensus 357 ~~~L~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~ 433 (458)
.+.|.+. .++.+..+.. +.++|+.+++ .+...+.+.|.++ ||.+.||+.|... -+.++++||+++.
T Consensus 311 ~~~L~~~~~~~~~~~~p~g------g~~~~~~~~~~~~~~~~~~~l~~~-gV~v~pg~~f~~~----~~~~~~iRi~~~~ 379 (403)
T d1wsta1 311 LEALEEYMPEGVEWTKPEG------GMFVRVTLPEGIDTKLMMERAVAK-GVAYVPGEAFFVH----RDKKNTMRLNFTY 379 (403)
T ss_dssp HHHHHHHCCTTCEECCCSB------SSEEEEECCTTCCTTTTHHHHHHT-TEECEEGGGGSTT----CCCCSEEEEECSS
T ss_pred HHHHHhhccCCeEEeCCCc------eeEEEEECCCCCCHHHHHHHHHHC-CEEEEechhhcCC----CCCCCEEEEEecC
Confidence 8888654 3667665541 5689999984 5677888999988 9999998755321 1236899999975
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhc
Q 012718 434 YNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 434 ~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
.+++++++.+++|.+++++..+
T Consensus 380 -~~~~~l~~al~rl~~~l~~~~k 401 (403)
T d1wsta1 380 -VPEETIREGVRRLAETIKEEMK 401 (403)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999986543
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.97 E-value=5.5e-30 Score=249.59 Aligned_cols=342 Identities=13% Similarity=0.118 Sum_probs=231.6
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCC--cchhhhHHHHHHHHHHHHHHHHcC--------CCCCCcEEEe
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG--IHFLSAKATDEYELARKKVAAFIN--------ASDSGEIVFT 135 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~~v~~t 135 (458)
+++|.|..+.+..+.+.+.+.+.+............ .....+...++..++|+++|++++ .++ ++|++|
T Consensus 36 ~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~-e~Ivit 114 (428)
T d1iaya_ 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDP-ERVVMA 114 (428)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCT-TSCEEE
T ss_pred CceEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCCh-hhEEEc
Confidence 678999999888887777666654321100000000 000111222344578888888763 233 499999
Q ss_pred CChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhh------cC
Q 012718 136 KNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEML------SR 207 (458)
Q Consensus 136 ~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l------~~ 207 (458)
+|+++++..++.++ +++||.|+++.|+|++... .+....|++++.++.+.. +.+|++.++..+ ..
T Consensus 115 ~G~~~al~~~~~~l----~~~Gd~Vlv~~P~y~~~~~---~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~ 187 (428)
T d1iaya_ 115 GGATGANETIIFCL----ADPGDAFLVPSPYYPAFNR---DLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNI 187 (428)
T ss_dssp EHHHHHHHHHHHHH----CCTTCEEEEESSCCTTHHH---HTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHh----CCCCCEEEEccCCchHHHH---HHHHhcCCeEEEeecccccccccccccccchhhhhhccCC
Confidence 99999999999998 7899999999999985432 122245899999998743 577888876543 34
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc---------------CCCCCCCCcEEEeccc
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV---------------VDVQGLDADFLVASSH 269 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~---------------~~~~~~~~d~~~~s~~ 269 (458)
+++++++++|+||||.+++ +++|+++|++||++||+|++|+..... ......+..+++.|+|
T Consensus 188 ~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~S 267 (428)
T d1iaya_ 188 KVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLS 267 (428)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEEST
T ss_pred CceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCC
Confidence 6789999999999999999 678999999999999999999832210 0111223568899999
Q ss_pred CCCCCCc--eeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHH---HHHHHhCHH
Q 012718 270 KMCGPTG--IGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAI---DYLSTIGMQ 343 (458)
Q Consensus 270 K~~gp~g--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al---~~~~~~g~~ 343 (458)
|.|+.+| +|+++..++. .+.+..... .+..+.....++.+.+ +++.+ -++
T Consensus 268 K~~~~~GlRiG~~~~~~~~l~~~~~~~~~-----------------------~~~~~~~~~~~~~a~l~~~~~~~~-~~~ 323 (428)
T d1iaya_ 268 KDMGLPGFRVGIIYSFNDDVVNCARKMSS-----------------------FGLVSTQTQYFLAAMLSDEKFVDN-FLR 323 (428)
T ss_dssp TTSSCGGGCEEEEEESCHHHHHHHHHHHT-----------------------TSCCCHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred CcccCCCcccccccccccchhhhhhhhhc-----------------------ccccccccccchhhhhhhhccccc-ccc
Confidence 9888777 9999986643 332221110 1122222223332222 22222 256
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------ChHHHHHHHhhhcCeEeccCCCCChh
Q 012718 344 KIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------HPTDIATLLDQQYGVATRSGHHCAQP 416 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~l~~~~gi~~~~g~~~~~~ 416 (458)
+.++++++.++.+.+.|+.. |+++..+.. +.++|++++.. +..++++.|.+++||.+.||..|..
T Consensus 324 ~~~~~l~~r~~~~~~~L~~~-gi~~~~p~g------g~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~- 395 (428)
T d1iaya_ 324 ESAMRLGKRHKHFTNGLEVV-GIKCLKNNA------GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC- 395 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBCCCSS------SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC-
T ss_pred ccccccchhHHHHHHHHHhC-CCEEecCCc------ceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCC-
Confidence 67777888889999999875 888765441 56889988631 2346777777666999999985532
Q ss_pred hHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 417 LHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 417 ~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
..++++|++++. .+++++++.+++|++++..
T Consensus 396 -----~~~g~~Ris~a~-~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 396 -----QEPGWFRVCFAN-MDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp -----SSSSEEEEECSS-SCHHHHHHHHHHHHHHHHT
T ss_pred -----CCCCEEEEEeCC-CCHHHHHHHHHHHHHHHhh
Confidence 237899999874 5778899999999999864
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.97 E-value=3.5e-29 Score=244.13 Aligned_cols=343 Identities=15% Similarity=0.151 Sum_probs=234.6
Q ss_pred CCeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCC---cchhhhHHHHHHHHHHHHHHHHcC--------CCCCCcEEE
Q 012718 66 KKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG---IHFLSAKATDEYELARKKVAAFIN--------ASDSGEIVF 134 (458)
Q Consensus 66 ~~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~~v~~ 134 (458)
.++|.|..+.+..+-+.+.+.+.+............ .....+....+..++|+++|++++ .++ ++|++
T Consensus 36 ~G~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~p-e~I~i 114 (431)
T d1m7ya_ 36 NGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP-NHLVL 114 (431)
T ss_dssp TSBEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG-GGEEE
T ss_pred CcEEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCc-ceEEE
Confidence 568999999888877666555543211100000000 000111222334578888887763 233 49999
Q ss_pred eCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHH-HcCCeEEEEeCCCC--CCCCHHHHHHhhcC----
Q 012718 135 TKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQ-KTGANLKFLNLNDD--ESPDLDKLKEMLSR---- 207 (458)
Q Consensus 135 t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~-~~g~~~~~v~~~~~--~~~d~~~l~~~l~~---- 207 (458)
|+|+++++.+++.++ +++||.|+++.|.|+.. ...+. ..|++++.++.+++ +.+|++.+++.+.+
T Consensus 115 t~G~~~al~~~~~~l----~~pGd~Vlv~~P~y~~~----~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~ 186 (431)
T d1m7ya_ 115 TAGATSANETFIFCL----ADPGEAVLIPTPYYPGF----DRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKR 186 (431)
T ss_dssp EEHHHHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh----cCCCCEEEEeCCCchhH----HHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhc
Confidence 999999999999998 78999999999999854 33332 45889999998754 56788888877653
Q ss_pred --CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcc----cCCC-------------CCCCCcEEE
Q 012718 208 --KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHM----VVDV-------------QGLDADFLV 265 (458)
Q Consensus 208 --~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~----~~~~-------------~~~~~d~~~ 265 (458)
+++++++++|+||||.+++ +++|+++|+++|++||+|++|+.-.. ..++ ...+..+++
T Consensus 187 ~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~ 266 (431)
T d1m7ya_ 187 NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVV 266 (431)
T ss_dssp TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEE
T ss_pred cCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEE
Confidence 6789999999999999999 77899999999999999999973221 0010 011245888
Q ss_pred ecccCCCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHH---HHHHHh
Q 012718 266 ASSHKMCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAI---DYLSTI 340 (458)
Q Consensus 266 ~s~~K~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al---~~~~~~ 340 (458)
.|+||.+|.+| +|+++.+++.+........ . .+..+.....++.+.+ ....+.
T Consensus 267 ~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~---------------------~-~~~~~~~~~~~~~a~l~~~~~~~~~ 324 (431)
T d1m7ya_ 267 YSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS---------------------S-FGLVSSQTQHLLSAMLSDKKLTKNY 324 (431)
T ss_dssp EESSSSSCCGGGCEEEEEESCHHHHHHHHHHG---------------------G-GSCCCHHHHHHHHHHHHCHHHHHHH
T ss_pred ecCcccccCCCCccceeccchhhhHHHHHHHh---------------------c-cccccccccchhhhhhccchhhhhh
Confidence 99999998777 9999998876533221111 0 0122222222232222 222222
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC-------ChHHHHHHHhhhcCeEeccCCCC
Q 012718 341 GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI-------HPTDIATLLDQQYGVATRSGHHC 413 (458)
Q Consensus 341 g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~l~~~~gi~~~~g~~~ 413 (458)
+.+.++++++.++.+.+.|++. |+++..+.. +.++|++++.. +..+++++|.+++||.+.||+.|
T Consensus 325 -~~~~~~~~~~~~~~l~~~L~~~-gi~~~~p~g------g~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F 396 (431)
T d1m7ya_ 325 -IAENHKRLKQRQKKLVSGLQKS-GISCLNGNA------GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSC 396 (431)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-TCEECCCCS------SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGG
T ss_pred -hhhhhhhhhhhhhhhhhhhhcC-CcEEecCCc------eeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEecccc
Confidence 6677888888999999999875 999876542 56889988631 23467777766569999999855
Q ss_pred ChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 414 AQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 414 ~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.. ..++++||+++. .+++++++.+++|++++++.
T Consensus 397 ~~------~~~~~~Ri~~a~-~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 397 HC------TEPGWFRVCFAN-LPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp TC------SSTTEEEEECSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred CC------CCCCEEEEEeCc-CCHHHHHHHHHHHHHHHHHh
Confidence 32 226899999974 46789999999999998864
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=5.2e-29 Score=239.14 Aligned_cols=332 Identities=15% Similarity=0.122 Sum_probs=241.6
Q ss_pred CCeEEecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHc----CCC--CCCcEEEeCCh
Q 012718 66 KKLVYLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI----NAS--DSGEIVFTKNA 138 (458)
Q Consensus 66 ~~~i~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~~~v~~t~g~ 138 (458)
.+.|.|.-|.+. ++|+.+.+++.+.+..... +|...++..++|+++|+++ |.+ ++++|++|+|+
T Consensus 26 ~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~---------~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~ 96 (382)
T d1u08a_ 26 HQAINLSQGFPDFDGPRYLQERLAHHVAQGAN---------QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGA 96 (382)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCC---------SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSH
T ss_pred CCCEEccCCCCCCCCCHHHHHHHHHHHhcCCC---------CCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccch
Confidence 467899888776 5678888999888764210 1112233446666666654 654 33369999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecc
Q 012718 139 TEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHI 217 (458)
Q Consensus 139 t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~ 217 (458)
++++.+++.++ .++||.|++++|.|+.. .......|+.+..++.+++ +.+|++++++.+.++++++++++|
T Consensus 97 ~~al~~~~~~l----~~~gd~vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P 168 (382)
T d1u08a_ 97 TEALYAAITAL----VRNGDEVICFDPSYDSY----APAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTP 168 (382)
T ss_dssp HHHHHHHHHHH----CCTTCEEEEEESCCTTH----HHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHHHHHHhhc----ccccceEEEecccccch----hhhhhhccccceecccccccccCCHHHHhhhhccCccEEEECCC
Confidence 99999999998 78999999999999944 5556667988888887755 567999999999999999999999
Q ss_pred cCcCccccc---HHHHHHHHHhcCcEEEEeccccCCcccC----CC----CCCCCcEEEecccCCCCCCc--eeEEEEec
Q 012718 218 SNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVV----DV----QGLDADFLVASSHKMCGPTG--IGFLFGKS 284 (458)
Q Consensus 218 ~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~----~~----~~~~~d~~~~s~~K~~gp~g--~G~l~~~~ 284 (458)
+||||.+++ +++|.++|++++++++.|+.+......- .. ...+..+++.|++|.++.+| +||+++++
T Consensus 169 ~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~ 248 (382)
T d1u08a_ 169 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA 248 (382)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred CcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccc
Confidence 999999999 5677788889999999999987433211 10 01125688999999887667 99999998
Q ss_pred cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Q 012718 285 DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIP 364 (458)
Q Consensus 285 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~ 364 (458)
++++.+..... ....+.+.....++..+++.-.+ .+...++++++.++.+.+.+...
T Consensus 249 ~~~~~~~~~~~---------------------~~~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~~- 305 (382)
T d1u08a_ 249 PISAEIRKVHQ---------------------YLTFSVNTPAQLALADMLRAEPE-HYLALPDFYRQKRDILVNALNES- 305 (382)
T ss_dssp HHHHHHHHHHH---------------------HHTSSCCHHHHHHHHHHHHHCTH-HHHTHHHHHHHHHHHHHHHTTSS-
T ss_pred hhHHHHHhhhc---------------------ccccccccccccccccccccchH-HHHHHHHHHHhhhhhhhhhhccC-
Confidence 87766543321 11123444444444455543222 25677888888999999988765
Q ss_pred CEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHH
Q 012718 365 NIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVD 441 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~ 441 (458)
++++..+.. +.++|++++. .+..++++.|.+++||.+.||+.+.... ..++++|||+. .++++++
T Consensus 306 g~~~~~p~g------g~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~----~~~~~~Ris~~--~~~e~l~ 373 (382)
T d1u08a_ 306 RLEILPCEG------TYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADP----FPHKLIRLCFA--KKESTLL 373 (382)
T ss_dssp SCEECCCCB------SSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSC----CCSCEEEEECC--SCHHHHH
T ss_pred CcEEecCCc------eEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCC----CCCCEEEEEEe--CCHHHHH
Confidence 888866541 5588999873 5678889887666699999998553211 12578999997 5788998
Q ss_pred HHHHHHHH
Q 012718 442 EFIHALNE 449 (458)
Q Consensus 442 ~l~~~l~~ 449 (458)
+.+++|++
T Consensus 374 ~al~RL~~ 381 (382)
T d1u08a_ 374 AAAERLRQ 381 (382)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 88888764
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=6.3e-28 Score=235.57 Aligned_cols=357 Identities=12% Similarity=0.026 Sum_probs=253.6
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCC--------CcEEEeCChhH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDS--------GEIVFTKNATE 140 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--------~~v~~t~g~t~ 140 (458)
-|+.+-..+..+..++..+....- +.|. ..+..++.......++.+.+++++|.+.. ...++|+|||+
T Consensus 75 ~f~~~~~~~~~~~~~l~~~~~~~~--n~n~--~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~ 150 (476)
T d1js3a_ 75 YFFAYFPTASSYPAMLADMLCGAI--GCIG--FSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASE 150 (476)
T ss_dssp TBCSSSCCCCCHHHHHHHHHHHHH--CCCC--SSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHH
T ss_pred CeeEeCCCCCCHHHHHHHHHHHhh--cccc--cchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHH
Confidence 466666666666666665544432 3332 44456667788888899999999999731 25689999999
Q ss_pred HHHHHHHHcCCCCC------C---------CCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhh
Q 012718 141 AINLVAYSWGLSNL------K---------SGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML 205 (458)
Q Consensus 141 a~~~~~~~l~~~~~------~---------~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l 205 (458)
|+..++.+.+.+.. . +.-.|++++..|+| +.+.+...|..++.||+++++.+|+++|++.|
T Consensus 151 anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~S----i~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i 226 (476)
T d1js3a_ 151 ATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS----VERAGLIGGVKLKAIPSDGKFAMRASALQEAL 226 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH----HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHH----HHHHHHhcCceEEEeccCCCCCcCHHHHHHHH
Confidence 99999876531110 0 11268889999985 46777778999999999999999999999999
Q ss_pred cCC------ceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCC-----CCC-CCcEEEecccC-CC
Q 012718 206 SRK------TKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV-----QGL-DADFLVASSHK-MC 272 (458)
Q Consensus 206 ~~~------~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~-----~~~-~~d~~~~s~~K-~~ 272 (458)
++. +.+|+.+..++.+|.+.|+++|+++|++||+|+|||++++.......- ... .+|.++.++|| ++
T Consensus 227 ~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~ 306 (476)
T d1js3a_ 227 ERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLL 306 (476)
T ss_dssp HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSS
T ss_pred HHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccc
Confidence 752 468899999999999999999999999999999999999876653321 111 38999999999 56
Q ss_pred CCCceeEEEEecccc--ccCCCccccCcceEeeecCC-CCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 012718 273 GPTGIGFLFGKSDLL--SAMPPFLGGGEMISDVFLDH-STFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYE 349 (458)
Q Consensus 273 gp~g~G~l~~~~~~~--~~l~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 349 (458)
.|.++|++++++... ..+. .+........... ..+.......+ ++.. ...+.++.+++.+...|+.++.++.
T Consensus 307 ~P~~~g~~l~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~sr~-~~al~lw~~l~~~G~~g~~~~i~~~ 381 (476)
T d1js3a_ 307 VNFDCSAMWVKRRTDLTGAFK---LDPVYLKHSHQGSGLITDYRHWQLP-LGRR-FRSLKMWFVFRMYGVKGLQAYIRKH 381 (476)
T ss_dssp CCSSCEEEEESCHHHHHGGGC---------------CCSCCCGGGSSSC-SCCC-CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcceeecccchHHHHHHHh---cChhhhccccccccccccccccccc-cchh-hHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 699999999987421 1111 0000000000000 00000011122 2223 3445678889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC--hHHHHHHHhhhcC-eEeccCCCCChhhHhhcCCCCe
Q 012718 350 MELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH--PTDIATLLDQQYG-VATRSGHHCAQPLHRYLGVNAS 426 (458)
Q Consensus 350 ~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~l~~~~g-i~~~~g~~~~~~~~~~~g~~~~ 426 (458)
.++++++.+.|++.++++++.++. .++|+|++.+.+ ..++.+++.+. | +++.+. .++...+
T Consensus 382 ~~lA~~l~~~l~~~~~fel~~~p~------l~iV~Fr~~~~d~~n~~l~~~l~~~-G~~~~s~t---------~~~g~~~ 445 (476)
T d1js3a_ 382 VQLSHEFEAFVLQDPRFEVCAEVT------LGLVCFRLKGSDGLNEALLERINSA-RKIHLVPC---------RLRGQFV 445 (476)
T ss_dssp HHHHHHHHHHHHHCTTEEECSCCC------SSEEEEEESSCHHHHHHHHHHHHHH-TSCBCEEE---------EETTEEE
T ss_pred HHHHHHHHHHHhcCCCeEEECCCc------eEEEEEEccCChHHHHHHHHHHHhc-CCEEEeee---------eECCEEE
Confidence 999999999999999999987653 679999997543 24567777766 5 333322 1333458
Q ss_pred EEEeeC-CCCCHHHHHHHHHHHHHHHHhh
Q 012718 427 ARASLH-FYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 427 lRis~~-~~~t~~di~~l~~~l~~~~~~~ 454 (458)
+|+++. +.++++||+.+++.|+++.+++
T Consensus 446 lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 446 LRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999986 6688999999999999998875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=4e-27 Score=224.64 Aligned_cols=333 Identities=15% Similarity=0.162 Sum_probs=250.0
Q ss_pred CCeEEecCCCC-C-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAAT-S-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+.+++|..+.. | ...+.+.++..+.++++.... +......+..+..+++++.||+++|.+ ..+++++++.|+.
T Consensus 38 ~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~--~~sr~~~g~~~~~~~lE~~LA~~~g~e---~al~~~SG~~an~ 112 (383)
T d1bs0a_ 38 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGS--GGSGHVSGYSVVHQALEEELAEWLGYS---RALLFISGFAANQ 112 (383)
T ss_dssp EEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCC--CSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHH
T ss_pred eEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCC--CccccccCcchHHHHHHHHHHHhcCCC---ceEEecccchhhH
Confidence 45566654432 3 236678899999988865433 222222345677788999999999986 7889999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC---CceEEEEecccCc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTKLVVIHHISNM 220 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~n~ 220 (458)
.++.++ .+++|.|++....|.+...+ ++..+++++.++.. |++++++.+.. +..+|+++.+.++
T Consensus 113 ~~i~al----~~~~d~v~~d~~~h~si~~g----~~~~~~~~~~~~hn-----d~~~le~~l~~~~~~~~~vv~e~v~s~ 179 (383)
T d1bs0a_ 113 AVIAAM----MAKEDRIAADRLSHASLLEA----ASLSPSQLRRFAHN-----DVTHLARLLASPCPGQQMVVTEGVFSM 179 (383)
T ss_dssp HHHHHH----CCTTCEEEEETTCCHHHHHH----HHTSSSEEEEECTT-----CHHHHHHHHHSCCSSCEEEEEESBCTT
T ss_pred HHHHhh----cCCCceEEeeccccHHHhhc----cccCCCcceEecch-----HHHHHHHHhcccCCCceEEEecCCCCC
Confidence 999998 68999999999988866433 45568888888866 88888888754 5589999999999
Q ss_pred CcccccHHHHHHHHHhcCcEEEEeccccCCcccCC------CCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCcc
Q 012718 221 LASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD------VQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFL 294 (458)
Q Consensus 221 tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~------~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~ 294 (458)
+|.+.|+++|.++|++||+++++|++|++|.+..+ ......++++.+++|.+|..| |++..+.+.++.+....
T Consensus 180 ~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~G-g~v~~~~~~~~~l~~~~ 258 (383)
T d1bs0a_ 180 DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFA 258 (383)
T ss_dssp TCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHC
T ss_pred CCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccccc-cccccchhHHHHHHhhc
Confidence 99999999999999999999999999998876433 123457899999999888764 67777777666554221
Q ss_pred ccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Q 012718 295 GGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPS 374 (458)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~ 374 (458)
..+ ......++....++.++++.+.....+..+++..++..++.+.|.+. ++.+....
T Consensus 259 ~~~-------------------~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~-- 316 (383)
T d1bs0a_ 259 RHL-------------------IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLADSC-- 316 (383)
T ss_dssp HHH-------------------HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECSCC--
T ss_pred hhh-------------------hhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCccCCCC--
Confidence 110 11234555566677788888877667788899999999999999988 77765443
Q ss_pred CcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 375 EHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 375 ~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
++++.+.+.+ ....++.+.|.++ ||.+.+..++..|. ....+|++++.++|++|||+++++|+.+
T Consensus 317 -----s~Ii~v~~g~~~~a~~~~~~L~~~-Gi~v~~~~~PtVp~-----g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 317 -----SAIQPLIVGDNSRALQLAEKLRQQ-GCWVTAIRPPTVPA-----GTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp -----SSBCCEEEESHHHHHHHHHHHHHT-TEECCEECTTSSCT-----TCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred -----CCEEEEEECCHHHHHHHHHHHHHC-CceEEEEcCCCCCC-----CCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 6666665543 2345788999998 99998766544332 1457999999999999999999999864
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=7.6e-27 Score=223.88 Aligned_cols=337 Identities=13% Similarity=0.132 Sum_probs=246.9
Q ss_pred CCeEEecCCC-CCC-CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAA-TSQ-KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~-~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+.+++|..+. .|. ..+.+.+++.+.++++..+. +......+.....+++++.+|+++|.+ .++++++|+.|+.
T Consensus 45 ~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~--~~sr~~~g~~~~~~~lE~~lA~~~g~e---~al~~~SG~~An~ 119 (401)
T d1fc4a_ 45 SHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGM--ASVRFICGTQDSHKELEQKLAAFLGME---DAILYSSCFDANG 119 (401)
T ss_dssp CEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCC--CSCHHHHCCBHHHHHHHHHHHHHHTCS---EEEEESCHHHHHH
T ss_pred CEEEEEEccccccccCCHHHHHHHHHHHHHhCCCc--ccceeeccCcHHHHHHHHHHHHhhcCC---ceEEecchhhhhH
Confidence 4555554332 232 36789999999988775443 222333334567778999999999987 7899999999999
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------CceEEEEecc
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTKLVVIHHI 217 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~ 217 (458)
.++.++ .+++|.|++....|.+...+ +...++++..++.. |.+++++.++. ...+|+++.+
T Consensus 120 ~~i~~l----~~~~d~i~~d~~~h~s~~~G----~~~~~a~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv 186 (401)
T d1fc4a_ 120 GLFETL----LGAEDAIISDALNHASIIDG----VRLCKAKRYRYANN-----DMQELEARLKEAREAGARHVLIATDGV 186 (401)
T ss_dssp TTHHHH----CCTTCEEEEETTCCHHHHHH----HHTSCSEEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESE
T ss_pred HHHHHh----cCCCcEEEeCCcchHHHHcc----ccccCceEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCC
Confidence 999988 68899999999999976543 33457788877755 66666665432 4478899999
Q ss_pred cCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC-------CC-CCCCcEEEecccCCCCCCceeEEEEecccccc
Q 012718 218 SNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD-------VQ-GLDADFLVASSHKMCGPTGIGFLFGKSDLLSA 289 (458)
Q Consensus 218 ~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~-------~~-~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~ 289 (458)
.++.|.+.|+++|.++|++||+++++|++|++|.+..+ .. ...+|++++|++|.+|..+.|++..++++++.
T Consensus 187 ~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~~~~~~ 266 (401)
T d1fc4a_ 187 FSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEW 266 (401)
T ss_dssp ETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHH
T ss_pred CCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCHHHHHH
Confidence 99999999999999999999999999999998765321 11 12489999999997765446888888887765
Q ss_pred CCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Q 012718 290 MPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY 369 (458)
Q Consensus 290 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~ 369 (458)
+.....++. | ....++....+...+++.+.. .+..++++.++.+++.+.+... ++.+.
T Consensus 267 l~~~~~~~~------------------~-s~~l~p~~~~aa~~~l~~~~~--~~~~~~~l~~~~~~~~~~l~~~-g~~~~ 324 (401)
T d1fc4a_ 267 LRQRSRPYL------------------F-SNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAA-GFTLA 324 (401)
T ss_dssp HHHHCHHHH------------------H-SCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT-TCCBC
T ss_pred HHcCChhhh------------------h-cCCCCHHHHHHHHhhhccccc--CHHHHHHHHHHHHHHHhhhccc-CCccC
Confidence 542211110 1 234555555566666666655 4788899999999999999887 66544
Q ss_pred CCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHH
Q 012718 370 GPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALN 448 (458)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~ 448 (458)
... ++++.+.+.+ ....++.+.|.++ ||.+.+..++..|. ....+|++++..+|++|||+++++|+
T Consensus 325 ~~~-------~pIv~v~~~~~~~a~~~~~~L~~~-Gi~v~~i~~PtVp~-----g~~~lRi~~~a~hT~edId~~v~al~ 391 (401)
T d1fc4a_ 325 GAD-------HAIIPVMLGDAVVAQKFARELQKE-GIYVTGFFYPVVPK-----GQARIRTQMSAAHTPEQITRAVEAFT 391 (401)
T ss_dssp CSS-------SSEEEEEEECHHHHHHHHHHHHHT-TEECCEECTTSSCT-----TCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCC-------CCEEEEEECCHHHHHHHHHHHHHC-CceEEeECCCCCCC-----CCceEEEEECCCCCHHHHHHHHHHHH
Confidence 333 6777776653 2244788999998 99987655443332 14569999999999999999999999
Q ss_pred HHHHhhh
Q 012718 449 ETVSFFN 455 (458)
Q Consensus 449 ~~~~~~~ 455 (458)
++.+++.
T Consensus 392 ev~~~lg 398 (401)
T d1fc4a_ 392 RIGKQLG 398 (401)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9998864
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.95 E-value=9.8e-28 Score=228.65 Aligned_cols=345 Identities=14% Similarity=0.172 Sum_probs=236.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhccCCCCC---cchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH-HHHHH
Q 012718 73 NAATSQKPIAVLKALQNYYEAYNSNVHRG---IHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN-LVAYS 148 (458)
Q Consensus 73 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~-~~~~~ 148 (458)
+.++.++|++|+++|.+.+.... +...+ ..+++..+.+.++++|+.|+++++.++++.|+|++|++.+.. .++..
T Consensus 8 ~pGP~~vp~~V~eam~~~~~~~~-~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~ 86 (361)
T d2c0ra1 8 NAGPAALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMN 86 (361)
T ss_dssp CSSSCCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHhhhc-ccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc
Confidence 44667899999999998765432 11122 223567899999999999999999987668888776665554 44444
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
+ +.+++++++...++.+ ..|..+++..|..++.+..+.....+++.+++.+...+ . .+.+|.||...|+.
T Consensus 87 l----~~~~~~~l~~~~g~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~v~~~tg~~~~~~ 156 (361)
T d2c0ra1 87 F----LKEGQTANYVMTGSWA--SKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDN-A---AYLHLTSNETIEGA 156 (361)
T ss_dssp H----CCTTCEEEEEECSHHH--HHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTT-E---EEEEEESEETTTTE
T ss_pred c----ccCCCceEEEeechhh--hhhhhhhhhcCceeeeeccccccccchhhhhhhcccCc-c---eEEEEecccceecc
Confidence 4 6788888877654443 37888899999999999988777788888887776554 2 34456799999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCC
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 308 (458)
+|.++|+++|+++++|+++++|..|++++++ |+.+.|.+|.++++|.+++++..+......+....+....
T Consensus 157 ~i~~~~~~~~al~~vDavss~g~~~id~~~~--di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 227 (361)
T d2c0ra1 157 QFKAFPDTGSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYD------- 227 (361)
T ss_dssp ECSSCCCCTTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHH-------
T ss_pred eEEEeeccCCceEEEEeeccccccccccccc--eeEEEecccccccccCcEEEEEhHHhhhCccccccccccc-------
Confidence 9999999999999999999999999999885 5555678997776665455554443333322221111000
Q ss_pred CCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEEEEE
Q 012718 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI-GMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALCSFN 386 (458)
Q Consensus 309 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v~~~ 386 (458)
.+.. ......+++......+..+....... +.....++.+..+..+................+ ..++ .+++|.
T Consensus 228 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~rS~~~~~~~ 302 (361)
T d2c0ra1 228 TYVK--NNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDV---DSRSDMNITFR 302 (361)
T ss_dssp HHHH--TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCG---GGBCSSEEEEE
T ss_pred cccc--cccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCCh---hhccceEEEEE
Confidence 0000 01112344454555554454444443 345566666666666666665543332222222 2334 478888
Q ss_pred eCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 387 VEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 387 ~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+++ .+..++.+.|.++ ||.++.|+.| -+.+|||+..+++.|||++|+++|+++.++
T Consensus 303 ~~~~~~~~~~~~~L~~~-GI~~~~G~~~----------~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 303 LASEELEKEFVKASEQE-GFVGLKGHRS----------VGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp CSCHHHHHHHHHHHHHT-TEESCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHC-CCEEecCCCc----------CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 874 5567899999888 9999988643 235999999999999999999999997764
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.95 E-value=1.5e-27 Score=227.39 Aligned_cols=352 Identities=13% Similarity=0.067 Sum_probs=241.6
Q ss_pred eEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCC---cchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHH
Q 012718 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRG---IHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINL 144 (458)
Q Consensus 68 ~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~ 144 (458)
.||..+.++.++|++|++++.+.+..++. ...+ ..+++..+.+.++++|+.+++++++++++.|++++|++++...
T Consensus 3 ~~~nF~pGP~~~p~~V~~a~~~~~~~~~~-~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~ 81 (360)
T d1w23a_ 3 QVFNFNAGPSALPKPALERAQKELLNFND-TQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFT 81 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSSTT-SSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred ceeEeCCCCcCCCHHHHHHHHHHHHhhcc-cCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHH
Confidence 36766778889999999999987644321 1111 1235677899999999999999999877678888988888776
Q ss_pred HHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCccc
Q 012718 145 VAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASI 224 (458)
Q Consensus 145 ~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~ 224 (458)
+.... ...+++++++...++.+. .+...++..+..++.+........+++.++...... .+.+.+|.||..
T Consensus 82 ~~~~~---~~~~~~~v~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~tg~~ 152 (360)
T d1w23a_ 82 MLPMN---LLTKGTIGNYVLTGSWSE--KALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNE----NDAYLHITSNNT 152 (360)
T ss_dssp HHHHH---HCCTTCEEEEEECSHHHH--HHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCCT----TEEEEEEESEET
T ss_pred HHHhh---hcccCcccceeeccchhh--hhHHHHHHhhhcceeeccccccccchhhhhhccccc----ccceeEecCCcc
Confidence 66655 367788888887766655 456667777777777665544333444444433322 244666779999
Q ss_pred ccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeee
Q 012718 225 LPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVF 304 (458)
Q Consensus 225 ~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 304 (458)
.|+++|.++||++|+++++|+++++|+.+++++++++|+++++.+|+++| |.|+++.++...+........+......
T Consensus 153 ~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 230 (360)
T d1w23a_ 153 IYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSG-VTVVIVKKDLLNTKVEQVPTMLQYATHI- 230 (360)
T ss_dssp TTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTT-CEEEEEEHHHHCSCCTTCCGGGCHHHHH-
T ss_pred ccceeeeeccccceeeEEeeccccccccccccccccceEEeeccccccCC-cceeeEechhhhcccccCCcchhhhhhh-
Confidence 99999999999999999999999999999999999888888777775444 4666766665544433222111110000
Q ss_pred cCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEE
Q 012718 305 LDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALC 383 (458)
Q Consensus 305 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v 383 (458)
.......++...........+......+ .....++........................+. .++..++
T Consensus 231 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~rS~~vv 299 (360)
T d1w23a_ 231 ---------KSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKG--SRSLMNV 299 (360)
T ss_dssp ---------HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGG--GBCSSEE
T ss_pred ---------hhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChh--hcceeEE
Confidence 0112234566666666666666555544 345555555566666665555444444333332 2333489
Q ss_pred EEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 384 SFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 384 ~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+|++++ ....++.+.|.++ ||.++.|+.| -+.+|+|+..++|.|||++|++.|.++.++
T Consensus 300 sf~i~~~~~~~~~~~~l~~~-GI~~~~G~~~----------~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 300 TFNLRNEELNQQFLAKAKEQ-GFVGLNGHRS----------VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp EEECSSHHHHHHHHHHHHHT-TEESCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCccHHHHHHHHHHC-CCeeeeCCCc----------cCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 999974 4567888888888 9999888755 246999998888999999999999998764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.95 E-value=1.1e-26 Score=220.29 Aligned_cols=335 Identities=18% Similarity=0.202 Sum_probs=245.6
Q ss_pred CCeEEecCCC-CC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHH
Q 012718 66 KKLVYLDNAA-TS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAIN 143 (458)
Q Consensus 66 ~~~i~l~~~~-~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~ 143 (458)
+.++.|..+. .| ...+.+.++..+.++++..+. +....-.+.....+++++.+|+++|.+ ..++.++|..|+.
T Consensus 45 ~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs--~~Sr~~~G~~~~h~~LE~~lA~~~g~e---~all~~sG~~An~ 119 (396)
T d2bwna1 45 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGS--GGTRNISGTTAYHRRLEAEIAGLHQKE---AALVFSSAYNAND 119 (396)
T ss_dssp EEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCC--CSBTTTBCCBHHHHHHHHHHHHHTTCS---EEEEESCHHHHHH
T ss_pred eEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCc--cccccccCCchHHHHHHHHHHHHhCCC---ceeeeecchHHHH
Confidence 4556665543 33 356788888889888865433 223333345677888999999999997 7788888888998
Q ss_pred HHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc----CCceEEEEecccC
Q 012718 144 LVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS----RKTKLVVIHHISN 219 (458)
Q Consensus 144 ~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~----~~~~~v~~~~~~n 219 (458)
.++.++. ...++|.|+.....|.+... -++..+++++.++.. |.+++++.+. .+.++|+++.+.+
T Consensus 120 ~~i~~l~--~~~~~d~i~~D~~~Hasi~~----g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvyS 188 (396)
T d2bwna1 120 ATLSTLR--VLFPGLIIYSDSLNHASMIE----GIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYS 188 (396)
T ss_dssp HHHHHHH--HHSTTCEEEEETTCCHHHHH----HHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCT
T ss_pred HHHHHHh--cccCCCceeehhhhhhccch----hhhccccCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeecc
Confidence 8888762 13578888888888876543 345568899988866 6777766653 2457999999999
Q ss_pred cCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCC--------CCCCCcEEEecccCCCCCCceeEEEEeccccccCC
Q 012718 220 MLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV--------QGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 220 ~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~--------~~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~ 291 (458)
++|.+.|+.+|.++|++||+++++|++|++|.+.-+- .....|++++|++|.||..| |++.++++.++.+.
T Consensus 189 mdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G-g~v~~~~~~i~~l~ 267 (396)
T d2bwna1 189 MDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-GYIAASARMVDAVR 267 (396)
T ss_dssp TTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-EEEEECHHHHHHHH
T ss_pred CcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc-cccchhHHHHHHHH
Confidence 9999999999999999999999999999988863221 01237999999999998774 78889988777665
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
....+.. | ...+++....+...+++.+......+.+++...+.+++.+.|.+. ++.+...
T Consensus 268 ~~~~~~i------------------f-Stalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~ 327 (396)
T d2bwna1 268 SYAPGFI------------------F-STSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDH 327 (396)
T ss_dssp HHCHHHH------------------T-SBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCC
T ss_pred hhcchhh------------------h-cccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-CCCcCCC
Confidence 3221111 1 234566667777777887765445667788888999999999877 6665433
Q ss_pred CCCCcCccccEEEEEeCC-CChHHHHHHHh-hhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVEN-IHPTDIATLLD-QQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~-~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
. ++++.+.+.+ ....++.+.|. ++ ||.+.+..++..|. ....+||+++..+|.+|||+++++|++
T Consensus 328 ~-------spIvpv~ig~~~~~~~~a~~lL~e~-Gi~v~~i~~PtVp~-----g~~rlRi~lsa~ht~edId~l~~~L~~ 394 (396)
T d2bwna1 328 G-------SHIVPVVIGDPVHTKAVSDMLLSDY-GVYVQPINFPTVPR-----GTERLRFTPSPVHDLKQIDGLVHAMDL 394 (396)
T ss_dssp S-------SSCEEEECCCHHHHHHHHHHHHHHH-CEECCEECTTTSCT-----TCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred C-------CCEEEEEeCCHHHHHHHHHHHHHhC-CEEEEEECCCcCCC-----CCeeEEEEeCccCCHHHHHHHHHHHHH
Confidence 3 7888888754 22345666654 56 99998766554442 146799999999999999999999987
Q ss_pred H
Q 012718 450 T 450 (458)
Q Consensus 450 ~ 450 (458)
+
T Consensus 395 i 395 (396)
T d2bwna1 395 L 395 (396)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.7e-27 Score=225.40 Aligned_cols=348 Identities=14% Similarity=0.005 Sum_probs=247.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhccCCCCC---cchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 73 NAATSQKPIAVLKALQNYYEAYNSNVHRG---IHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 73 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
+.++..+|++|++++.+.+.++..+ ..+ .++++..+.+.++++|+.|++++|+++++.|+|++|++++.+.+....
T Consensus 6 ~pGP~~~p~~Vl~a~~~~~~~~~~~-~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~ 84 (360)
T d1bjna_ 6 SSGPAMLPAEVLKQAQQELRDWNGL-GTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLN 84 (360)
T ss_dssp CSSSCCCCHHHHHHHHHTSSSGGGS-SSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHhhhccc-CccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhc
Confidence 4566688999999999987765422 222 234677889999999999999999987668898888877777666554
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHH
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
...+++.+++....+... .+...++..|..++.+....+...+.+.+++.+..+++++++.+.+|.||...++..
T Consensus 85 ---~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~ 159 (360)
T d1bjna_ 85 ---ILGDKTTADYVDAGYWAA--SAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDE 159 (360)
T ss_dssp ---HCTTCCEEEEEESSHHHH--HHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCC
T ss_pred ---ccccccccceecccchhh--hhHHHHhhcCccceeeccccCCCcchhhhhhhhccCCceeEEEecccccccCccccc
Confidence 267778887776555543 667778888888777776666666777777878888899999999999999999876
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCC-CCCCceeEEEEeccccccCCCccccCcceEeeecCCC
Q 012718 230 IVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKM-CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~-~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 308 (458)
+ .++.+++.+++|++++++..+++.. +.|++++|.+|. ++|+|+++++.+++..+........+.... . .
T Consensus 160 i--~~~~~~~~v~vDa~~~~~~~~vd~~--~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~ 230 (360)
T d1bjna_ 160 T--PDFGADVVVAADFSSTILSRPIDVS--RYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSI-L----N 230 (360)
T ss_dssp C--CCCCTTCCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHH-H----H
T ss_pred e--ecccccceeeeeeeccccceeeeec--cceeEEEEcccccccCCCceeEeeehhhhhccccCCcchhhHH-H----H
Confidence 6 3577899999999999998877654 479999999994 457778888887766544432221111100 0 0
Q ss_pred CCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC
Q 012718 309 TFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE 388 (458)
Q Consensus 309 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 388 (458)
.+ ......++......+....+......+.+...++..+.+.++...+.......+...+ . .++..+++|.++
T Consensus 231 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~rs~~v~~f~~~ 303 (360)
T d1bjna_ 231 DN----GSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAK-R--NRSRMNVPFQLA 303 (360)
T ss_dssp HT----TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCG-G--GBCSSEEEEEES
T ss_pred hh----hhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCc-c--cccceEEEEEcC
Confidence 00 0111223333333344444444555556677777777788888777777444433333 2 234458899997
Q ss_pred -CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 389 -NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 389 -~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
+.+..++.+.|.++ ||.++.|+.+ -+.+|||+..++|.|||++|+++|+++.++
T Consensus 304 ~~~~~~~~~~~l~~~-Gi~~~~G~~~----------~g~~Ris~~~~~t~edV~~li~~l~e~~~~ 358 (360)
T d1bjna_ 304 DSALDKLFLEESFAA-GLHALKGHRV----------VGGMRASIYNAMPLEGVKALTDFMVEFERR 358 (360)
T ss_dssp SGGGHHHHHHHHHHT-TEECCBCCTT----------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHC-CCEeecCCCc----------cCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 46778899999988 9999888533 235999999999999999999999997754
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=1e-24 Score=208.80 Aligned_cols=341 Identities=14% Similarity=0.133 Sum_probs=226.3
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
.+++-++++.+.++. +....| ...+++++.+|+++|.+ .+++++|||.|+.+++.++ .+++||
T Consensus 10 ~~~~~~~~~~~~~~~-------~~~~~G----~~v~~~E~~la~~~g~~---~ai~~~sgt~Al~~al~al---~~~~gd 72 (376)
T d1mdoa_ 10 MGAEELAAVKTVLDS-------GWITTG----PKNQELEAAFCRLTGNQ---YAVAVSSATAGMHIALMAL---GIGEGD 72 (376)
T ss_dssp CCHHHHHHHHHHHHH-------TCCSSS----HHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHT---TCCTTC
T ss_pred CCHHHHHHHHHHHhc-------CCCcCC----HHHHHHHHHHHHHHCcC---eEEEeCCHHHHHHHHHHHh---CCCCCC
Confidence 456667778887765 222222 34567889999999987 7899999999999999998 489999
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV 237 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~ 237 (458)
+|+++..+|.++..++. ..|++++.++++++ +.+|+++++++++++|++|+++|. .|...|+++|.++|+++
T Consensus 73 eVi~~~~~~~~~~~ai~----~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~---~G~~~~~~~i~~i~~~~ 145 (376)
T d1mdoa_ 73 EVITPSMTWVSTLNMIV----LLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHY---AGAPADLDAIYALGERY 145 (376)
T ss_dssp EEEEESSSCHHHHHHHH----HTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHH
T ss_pred EEEEecccccccccchh----ccccceeeecccccccCCCHHHHHHhcCCCCeEEEEeCC---CCCccchhHHHHHHHhc
Confidence 99999999998765554 45999999999865 789999999999999999998775 89999999999999999
Q ss_pred CcEEEEeccccCCcccCC--CCCCCCcEEEecccCCCCCCceeEEEEecc-ccccCCCccccCcceEeee----cCCCCC
Q 012718 238 GAKVLVDACQSVPHMVVD--VQGLDADFLVASSHKMCGPTGIGFLFGKSD-LLSAMPPFLGGGEMISDVF----LDHSTF 310 (458)
Q Consensus 238 ~~~vivD~a~~~g~~~~~--~~~~~~d~~~~s~~K~~gp~g~G~l~~~~~-~~~~l~~~~~g~~~~~~~~----~~~~~~ 310 (458)
|+++|+|++|++|...-+ ....+..++.++.+|.++..+.|+++.+++ +.+.++.+...+....... .....|
T Consensus 146 ~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 225 (376)
T d1mdoa_ 146 GIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQA 225 (376)
T ss_dssp TCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CC
T ss_pred CceEEeccchhccCeeCCeecccccCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCcccccccccccccccc
Confidence 999999999999976322 334444444455569666545677777764 3333332222111100000 000001
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC--
Q 012718 311 ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-- 388 (458)
Q Consensus 311 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 388 (458)
.....++... ++. ..+...+..+. .++++.++.+++++++.+.|++++...+....... ......+.+.+.
T Consensus 226 ~~~~~g~n~~-~~~---~~Aai~~~qL~--~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 298 (376)
T d1mdoa_ 226 EVLAPGYKYN-LPD---LNAAIALAQLQ--KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEH-IHAWHLFIIRVDEA 298 (376)
T ss_dssp EESSCCCBCC-CCH---HHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCE-ECCCSCEEEECCHH
T ss_pred cchhcccccc-cch---hhhhhhhhhhh--hhhHHHHHHhhhhhhhhhhcccccccccccccccc-cccccccccccccc
Confidence 0001111111 111 11222223333 36788889999999999999998766654443220 111122333333
Q ss_pred --CCChHHHHHHHhhhcCeEeccCCCCC--hhhHh-hcCC----------CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 389 --NIHPTDIATLLDQQYGVATRSGHHCA--QPLHR-YLGV----------NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 389 --~~~~~~~~~~l~~~~gi~~~~g~~~~--~~~~~-~~g~----------~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
+.+.+++.+.|.++ ||.++...... .+... .+.. ...+.+.+++..|.+||+++++.|++++
T Consensus 299 ~~~~~Rd~l~~~L~~~-gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 299 RCGITRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp HHSSCHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHC-CCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 34567899999999 99886432110 11111 1111 4678888888889999999999999875
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=3.9e-25 Score=207.34 Aligned_cols=299 Identities=18% Similarity=0.241 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+.+++.++++-|.. ..++++||..|+..++.++ +++||+|++++..|+++...+....++.|+++..++
T Consensus 58 nPT~~~LE~~la~LEg~~---~a~~~~SGmaAi~~~l~~l----~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d 130 (392)
T d1gc0a_ 58 NPTLNLLEARMASLEGGE---AGLALASGMGAITSTLWTL----LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVD 130 (392)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEEC
T ss_pred ChHHHHHHHHHHHHhCCc---ceeehhhHHHHHHHHHHhh----ccCCCeeecccccchhhhhhhhhhhccCCcccccCC
Confidence 345557779999999876 6788899999999999988 789999999999999998878888888899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.. |++.+++++++++++|+++.|.||+..+.|+++|+++||++|++++||.+.+.+.. ...-++|+|+++-|.+
T Consensus 131 ~~-----d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~-~~Pl~~GaDivihS~T 204 (392)
T d1gc0a_ 131 MA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL-QRPLELGADLVVHSAT 204 (392)
T ss_dssp TT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH-CCGGGGTCSEEEEETT
T ss_pred cc-----CHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccc-cChHHhCCCEEEEecc
Confidence 66 88999999999999999999999999999999999999999999999999986655 2222668999999999
Q ss_pred CCCCCCc---eeEEEEeccccccCC--CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 270 KMCGPTG---IGFLFGKSDLLSAMP--PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 270 K~~gp~g---~G~l~~~~~~~~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
|++++.+ .|.++++++.+.+++ ... ....+++++.....+...++.+ ..
T Consensus 205 Kyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~---------------------~~~G~~~~p~da~ll~rgl~TL-----~l 258 (392)
T d1gc0a_ 205 KYLSGHGDITAGIVVGSQALVDRIRLQGLK---------------------DMTGAVLSPHDAALLMRGIKTL-----NL 258 (392)
T ss_dssp TTTTCSSSCCCEEEEECHHHHHHHHHTHHH---------------------HHTCCCCCHHHHHHHHHHHTTH-----HH
T ss_pred eeecCCcccccccccchhHHHHHHHHHHHH---------------------HccCCcCChhhHHHHHhccccH-----HH
Confidence 9887766 788888887654432 111 1112345554444444444433 44
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEE-EeCCCCC----------CcCccccEEEEEeCCCChHHHHHHHhhhcCe---EeccC
Q 012718 345 IHAYEMELAKYLYENLLSIPNIR-IYGPKPS----------EHVQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSG 410 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g 410 (458)
..++..+++..+.+.|++.|.++ +..|.-. .....+++++|.+.+ +.+...+.+..- .+ ..+-|
T Consensus 259 Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~-~~~~~~~f~~~L-~l~~~a~SlG 336 (392)
T d1gc0a_ 259 RMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-GIGAGRRFMNAL-QLFSRAVSLG 336 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-HHHHHHHHHHHC-SSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeC-CHHHHHHHHHhC-CcceEeeccC
Confidence 45666678888888888887665 3322110 112346799999974 222222333222 33 22333
Q ss_pred CCCC--------------hhhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 411 HHCA--------------QPLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 411 ~~~~--------------~~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
...+ ......+|. ++.||+|++. ||++.+++.|+++++.
T Consensus 337 g~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~a 390 (392)
T d1gc0a_ 337 DAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL----EDIDDLLADVQQALKA 390 (392)
T ss_dssp CSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred CcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeee----CCHHHHHHHHHHHHHh
Confidence 3211 111123444 6799999997 7888888888887764
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.93 E-value=6.5e-24 Score=199.09 Aligned_cols=299 Identities=20% Similarity=0.226 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+.+.+.++++-|.. ..++++||..|+..++.++ +++||+|++++..|..+...+.....+.|+++..++
T Consensus 62 nPT~~~LE~~la~LEgg~---~a~~~sSGmaAi~~~l~~l----l~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd 134 (397)
T d1y4ia1 62 NPTTDALEKKLAVLERGE---AGLATASGISAITTTLLTL----CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVD 134 (397)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCc---cceeehHHHHHHHHHHhhc----cCCCCeeeeecccccccchhhhcccCCCceEeeccC
Confidence 345566779999999886 6688889999999999888 899999999999999988878778888999999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.. |++.+++++++++++|+++.|.||+..+.|+++|+++||++|++++||.+.+.+.. ...-++|+|+++.|.+
T Consensus 135 ~~-----d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~-~~Pl~~GaDivihS~T 208 (397)
T d1y4ia1 135 AG-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC-QQPLQLGADIVVHSVT 208 (397)
T ss_dssp TT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-CCGGGGTCSEEEEETT
T ss_pred CC-----CHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCccc-CcchhcCCCEEEEehh
Confidence 65 88999999999999999999999999999999999999999999999999987765 2333668999999999
Q ss_pred CCCCCCc---eeEEEEeccccccCC--CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 270 KMCGPTG---IGFLFGKSDLLSAMP--PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 270 K~~gp~g---~G~l~~~~~~~~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
|++++.+ .|.++.+++.+...+ .+.. ...+.+++.....+...|+.+ ..
T Consensus 209 Kyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~---------------------~~G~~l~p~~a~l~~rgl~TL-----~l 262 (397)
T d1y4ia1 209 KYINGHGDVIGGIIVGKQEFIDQARFVGLKD---------------------ITGGCMSPFNAWLTLRGVKTL-----GI 262 (397)
T ss_dssp TTTTCSSCCCCEEEEECHHHHHHHHHTHHHH---------------------TTCCCCCHHHHHHHHHHHTTH-----HH
T ss_pred hhcCCCcceeeeccCCCHHHHHHHHHHHHHh---------------------CcCCcCCHHHHHHHHcCcCcH-----HH
Confidence 9887776 788888887654321 1111 112345544444443444433 44
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCe---EeccC
Q 012718 345 IHAYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSG 410 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g 410 (458)
..++..+++..+.+.|+++|.++ |..|.-..+ ...+++++|.+.+ +.+...+.+..- .+ ..+-|
T Consensus 263 Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~-~~~~~~~f~~~L-~l~~~a~SlG 340 (397)
T d1y4ia1 263 RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG-GLEAGRRMINSV-ELCLLAVSLG 340 (397)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETT-HHHHHHHHHHTC-SSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecC-CHHHHHHHHHcC-CccceeeccC
Confidence 45666788899999999998876 444422110 2247799999875 222223333322 33 22223
Q ss_pred CCCC------h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 411 HHCA------Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 411 ~~~~------~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
..-+ . ......|. ++.||+|++. ||++.+++.|++++++
T Consensus 341 g~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl----Ed~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 341 DTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL----EDPEDIINDLEHAIRK 394 (397)
T ss_dssp CSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred cccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc----CCHHHHHHHHHHHHHH
Confidence 3111 1 11123444 6799999998 7888888888888875
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.92 E-value=1.9e-24 Score=210.84 Aligned_cols=300 Identities=13% Similarity=0.111 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
....++...+++++|.+.. ..+...|++.++.+++.+.+ ...+++.|+++...|+++. +.+...|++++.++.
T Consensus 113 ~~~~~~~~~~~~~~g~~~~-~~~~~~~t~~~~~~~l~a~r--~~~~~~~vi~s~~~H~s~~----k~~~~~g~~~~~v~~ 185 (434)
T d2z67a1 113 ALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAAR--KKYGSNVVIYPYASHKSPI----KAVSFVGMNMRLVET 185 (434)
T ss_dssp HHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHH--HHHCCCEEEEECCCCHHHH----HHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCcc-eeecCcHHHHHHHHHHHHHH--HhhcCceEEEeccCCHHHH----HHHHHhCCcceEEEe
Confidence 4445566778899998753 44455666666666666652 2347889999999999764 445567999888764
Q ss_pred ---CCCCCCCHHHHHHhhcC-----CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc-----cCCCC
Q 012718 191 ---NDDESPDLDKLKEMLSR-----KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM-----VVDVQ 257 (458)
Q Consensus 191 ---~~~~~~d~~~l~~~l~~-----~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-----~~~~~ 257 (458)
++.+.+|+++|++++++ ++.+|+++++++++|.+.|+++|+++|+++|+++|+|++|+.+.. +....
T Consensus 186 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~ 265 (434)
T d2z67a1 186 VLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAF 265 (434)
T ss_dssp EEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHH
T ss_pred ecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccc
Confidence 33467899999999964 678899999999999999999999999999999999999986542 22234
Q ss_pred CCCCcEEEecccC-CCCCCceeEEEEecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH
Q 012718 258 GLDADFLVASSHK-MCGPTGIGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID 335 (458)
Q Consensus 258 ~~~~d~~~~s~~K-~~gp~g~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 335 (458)
..++|++++|+|| +.+|.|+|+++.+++ .++.+.... .++.+......+.+++.
T Consensus 266 ~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~l~ 321 (434)
T d2z67a1 266 KYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY------------------------PGRASATPVVNTLVSLL 321 (434)
T ss_dssp TSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS------------------------CSCBCSHHHHHHHHHHH
T ss_pred cCCcceEEEcCccccccCCCccccccCcHHHHHHHHhhc------------------------ccccccchHHHHHHHHH
Confidence 5679999999999 566889999988764 333332221 12333345566667778
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCC
Q 012718 336 YLSTIGMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 336 ~~~~~g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~ 412 (458)
.+...|+..+.++..++++++.+.|+++ .+.+++..+. ...+.+.+ +.+..++...|.++ ||.......
T Consensus 322 ~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~------~~~~~~~~-~~~~~~l~~~L~~~-gI~g~~v~~ 393 (434)
T d2z67a1 322 SMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVES------PIASCISV-NSDPVEIAAKLYNL-RVTGPRGIK 393 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCC------SSEEEEEC-SSCHHHHHHHHHHT-TEESCEEEC
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCC------Cceeeeec-CCCHHHHHHHHHHc-CCeeeehhh
Confidence 8877788899999999999999888764 3555554431 22333333 44678899999988 986432211
Q ss_pred CChh-h--HhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHH
Q 012718 413 CAQP-L--HRYLGVNASARASLHFYNTKEDVDEFIHALNE 449 (458)
Q Consensus 413 ~~~~-~--~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~ 449 (458)
.... . ...+....++|++++.++|++|||++++.|++
T Consensus 394 ~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 394 KTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp TTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred hccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 1111 1 11233368899999999999999999999986
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.92 E-value=1.8e-25 Score=215.69 Aligned_cols=329 Identities=13% Similarity=0.041 Sum_probs=215.6
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC-----CCCcEEE
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS-----DSGEIVF 134 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~~v~~ 134 (458)
++.|+|..|. ..+.++.+.++..+...+... + +|....+..++|+++++++... .++.++.
T Consensus 28 ~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~--~------~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~ 99 (401)
T d7aata_ 28 SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMD--K------EYLPIAGLADFTRASAELALGENSEAFKSGRYVT 99 (401)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCC--C------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCC--C------CCCCCCCCHHHHHHHHHHHhccCCcccCcCceEE
Confidence 4568887762 235568888887777654211 1 1223455668899999887443 1225555
Q ss_pred eCCh--h---HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhc-
Q 012718 135 TKNA--T---EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLS- 206 (458)
Q Consensus 135 t~g~--t---~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~- 206 (458)
+.++ + .++..++.++ +++||.|++++|.|+. +...++..|++++.+|+.++ +..|.+.+.+.+.
T Consensus 100 ~~~~~~~g~~~~~~~~~~~l----~~pGd~Vlv~~P~y~~----y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (401)
T d7aata_ 100 VQGISGTGSLRVGANFLQRF----FKFSRDVYLPKPSWGN----HTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK 171 (401)
T ss_dssp EEEEHHHHHHHHHHHHHHHH----CTTCCEEEEEESCCTT----HHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred eccchHHHHHHHHHHhhHhh----cCCCceEEEecCCCcc----hhhHHHHcCCeEEEEeccccccccccHHHHHHHHhc
Confidence 4332 2 4566666666 7999999999999994 46667778999999998643 5568888777764
Q ss_pred --CCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc---C------C-CCCCCCcEEEecccCC
Q 012718 207 --RKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV---V------D-VQGLDADFLVASSHKM 271 (458)
Q Consensus 207 --~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~---~------~-~~~~~~d~~~~s~~K~ 271 (458)
++++++++++++||||.+++ +++|+++|++|+++||+|++|..-... . . .......+++.|++|.
T Consensus 172 ~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~ 251 (401)
T d7aata_ 172 IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKN 251 (401)
T ss_dssp SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred CCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEecccc
Confidence 47799999999999999999 778999999999999999999733220 0 0 0112245777899998
Q ss_pred CCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH------HHHHhCHH
Q 012718 272 CGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID------YLSTIGMQ 343 (458)
Q Consensus 272 ~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~~ 343 (458)
++.+| +|+++++.+.++.+.......... .+...+.++..........+. .+.. .++
T Consensus 252 ~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~ 316 (401)
T d7aata_ 252 MGLYGERAGAFTVICRDAEEAKRVESQLKIL--------------IRPMYSNPPMNGARIASLILNTPELRKEWLV-EVK 316 (401)
T ss_dssp SCCGGGCEEEEEEECSSHHHHHHHHHHHHHH--------------HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHH-HHH
T ss_pred ceeeccccceeecchHHHHHHHHHHHHHHHH--------------hhccccccchHHHHHHHHhcCCHHHHHHHHH-HHH
Confidence 88777 999999988765543221100000 000011223222233322222 1111 256
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC---EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhh
Q 012718 344 KIHAYEMELAKYLYENLLSIPN---IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRY 420 (458)
Q Consensus 344 ~~~~~~~~l~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~ 420 (458)
.++++++++++.+.+.|+++.. +.+..+. .|.++|+.++ .+++++|.+++||++.+|
T Consensus 317 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~------~G~F~~~~ls----~e~~~~L~~e~gV~~~pg---------- 376 (401)
T d7aata_ 317 GMADRIISMRTQLVSNLKKEGSSHNWQHITDQ------IGMFCFTGLK----PEQVERLTKEFSIYMTKD---------- 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHC------CSSEEECCCC----HHHHHHHHHHHCEECCTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcceECCC------CeEEEecCCC----HHHHHHHHHhCCEEECCC----------
Confidence 7778888889999999987621 2222232 1456665442 456777766669998765
Q ss_pred cCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 421 LGVNASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 421 ~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
.|||++. .++++|++++++|+++++
T Consensus 377 ------~Ris~a~-~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 377 ------GRISVAG-VASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp ------CEEEGGG-CCTTTHHHHHHHHHHHHC
T ss_pred ------cEEEecc-CCHHHHHHHHHHHHHHhC
Confidence 4999875 567899999999998864
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.92 E-value=1.3e-24 Score=213.71 Aligned_cols=314 Identities=13% Similarity=0.053 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhH-HHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATE-AINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~-a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
..+.++++.+|+++|++ +.+|++|||. ++..++.++ +++||+|+++..+|.|+..++..+. ..+..+..++
T Consensus 66 ~~i~eae~~~A~~~ga~---~a~f~~~Gtt~~n~a~i~a~----~~~gd~Vi~~~~~H~Sv~~~~~~l~-~~~~~~~~~~ 137 (462)
T d1c4ka2 66 GPAVAAEKHAARVYNAD---KTYFVLGGSSNANNTVTSAL----VSNGDLVLFDRNNHKSVYNSALAMA-GGRPVYLQTN 137 (462)
T ss_dssp THHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHTTTT-CCEEEEECEE
T ss_pred HHHHHHHHHHHHHhCCC---eEEEECCchHHHHHHHHHHh----cCCCCeEEecccchHHHHHHHHHHh-cCCceeeecc
Confidence 34667899999999987 6666666555 555556665 7999999999999998765443321 1123333344
Q ss_pred CCCCC--------CCCHHH---------HHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcc
Q 012718 190 LNDDE--------SPDLDK---------LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHM 252 (458)
Q Consensus 190 ~~~~~--------~~d~~~---------l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~ 252 (458)
+++.+ .++.+. +++.+..++..+++.+.+|..|.+.|+++|+++||++|+++++|++|+.+..
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~ 217 (462)
T d1c4ka2 138 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQ 217 (462)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred cccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhcccc
Confidence 44433 223332 3334445677777778889999999999999999999999999999997654
Q ss_pred cCC-----C--------CCCCCcEEEecccCCCCC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccC
Q 012718 253 VVD-----V--------QGLDADFLVASSHKMCGP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFE 318 (458)
Q Consensus 253 ~~~-----~--------~~~~~d~~~~s~~K~~gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 318 (458)
..+ . ...++|++++|+||++|+ .|.+++..++..+........ ...... ....++
T Consensus 218 ~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~ 286 (462)
T d1c4ka2 218 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCD-HKHFNN----------SFNLFM 286 (462)
T ss_dssp SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCC-HHHHHH----------HHHHHS
T ss_pred ccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhh-HHHHHH----------hhhhcc
Confidence 222 1 122469999999997775 456666666655543322111 000000 012355
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC-----------------------
Q 012718 319 AGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE----------------------- 375 (458)
Q Consensus 319 ~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~----------------------- 375 (458)
.+++++..+.++..+..++...+..++.++..++++++++.+.++.+..........
T Consensus 287 t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 366 (462)
T d1c4ka2 287 STSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFE 366 (462)
T ss_dssp CSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCC
T ss_pred cCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccC
Confidence 788999999999999888876556778888888999999998876432211110000
Q ss_pred --------cCcccc-------EEEEEeC------------CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEE
Q 012718 376 --------HVQRAA-------LCSFNVE------------NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASAR 428 (458)
Q Consensus 376 --------~~~~~~-------~v~~~~~------------~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lR 428 (458)
...... -+.+..+ +.+..++.+.|.+. ||...-. ..+.+|
T Consensus 367 ~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~-gI~~e~~------------~~~~i~ 433 (462)
T d1c4ka2 367 KGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDH-GIIPEKS------------DLNSIL 433 (462)
T ss_dssp TTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHT-TCCCSEE------------CSSEEE
T ss_pred CcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHc-CCeeecc------------CCCeEE
Confidence 000000 0223322 33567888888876 9876321 156899
Q ss_pred EeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 429 ASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 429 is~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
++++.++|++|||+++++|.++.+.+.+
T Consensus 434 ~~~s~~~T~edid~li~aL~ei~r~~~~ 461 (462)
T d1c4ka2 434 FLMTPAETPAKMNNLITQLLQLQRLIEE 461 (462)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999877654
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=1.2e-24 Score=213.03 Aligned_cols=313 Identities=13% Similarity=0.091 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH-HHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLV-AYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~-~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
.....++.+.+++++|.+.....++|+++|++...+ +.+++ ....+++.|+++...|.+. ...+...|++++.|
T Consensus 93 ~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~-~~~~~~~~vi~~~~~H~s~----~~a~~~~g~~~~~v 167 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR-HKRPKAKYIIWPRIDQKSC----FKSMVTAGFEPVVI 167 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHH-HHCTTCCEEEEECCCCHHH----HHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHH-HhCCCCCEEEEcCcccHHH----HHHHHHcCCeeEEE
Confidence 445566888899999998765778888887655544 33331 1245678999999999965 44556679998888
Q ss_pred eC---CCCCCCCHHHHHHhhcC----CceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCccc------CC
Q 012718 189 NL---NDDESPDLDKLKEMLSR----KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV------VD 255 (458)
Q Consensus 189 ~~---~~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~------~~ 255 (458)
+. ++++.+|+++|++++.+ ++.+|+++++++++|.+.|+++|+++|+++|+++|+|++|+.+... .+
T Consensus 168 ~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 247 (445)
T d3bc8a1 168 ENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQG 247 (445)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred EeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhc
Confidence 63 45588999999998854 6789999999999999999999999999999999999999976531 11
Q ss_pred CCCCCCcEEEecccC-CCCCCceeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHH
Q 012718 256 VQGLDADFLVASSHK-MCGPTGIGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAA 333 (458)
Q Consensus 256 ~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 333 (458)
..-.++|++++|+|| +++|.|+|+++.+++. ++.+..... ++.+......+..+
T Consensus 248 ~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 303 (445)
T d3bc8a1 248 ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYP------------------------GRASASPSLDVLIT 303 (445)
T ss_dssp HHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSC------------------------SCBCSHHHHHHHHH
T ss_pred cCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHh------------------------hcccCcchHHHHHH
Confidence 222248999999999 6679999999988643 222221111 11222233455566
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeC------CCChHHHHHHHhhhcC
Q 012718 334 IDYLSTIGMQKIHAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVE------NIHPTDIATLLDQQYG 404 (458)
Q Consensus 334 l~~~~~~g~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~l~~~~g 404 (458)
+..+...+.....++..++.+++.+.|.++ .+..+...... ....++.+. +.+..++...|.+. |
T Consensus 304 ~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~-----~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-g 377 (445)
T d3bc8a1 304 LLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN-----PISLAMTLKTIDGHHDKAVTQLGSMLFTR-Q 377 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTC-----SSEEEEECTTTSSSSSCHHHHHHHHHHHT-T
T ss_pred HHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCC-----CcceEEEeeeccccCCCCHHHHHHHHHHc-C
Confidence 666766677788888888888888877654 24444333321 233444432 23345677778777 8
Q ss_pred eEeccCCCCChh------hHhhcCC------CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhcc
Q 012718 405 VATRSGHHCAQP------LHRYLGV------NASARASLHFYNTKEDVDEFIHALNETVSFFNVF 457 (458)
Q Consensus 405 i~~~~g~~~~~~------~~~~~g~------~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~~ 457 (458)
|.......+... ....++. ..++|++++.++|++|||++++.|+++++++++.
T Consensus 378 I~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~ 442 (445)
T d3bc8a1 378 VSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 442 (445)
T ss_dssp CCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 743321111100 0001111 3579999999999999999999999999998663
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=4.2e-23 Score=193.21 Aligned_cols=302 Identities=20% Similarity=0.253 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+.+++.++++-|.. ..+.++||..|+..++.++ +++||.|++++..|.+....+.....+.|.++..++
T Consensus 49 nPt~~~le~~la~LEgg~---~a~~~sSGMaAi~~~l~~l----~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d 121 (384)
T d1cs1a_ 49 NPTRDVVQRALAELEGGA---GAVLTNTGMSAIHLVTTVF----LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 121 (384)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCC---ceEEecChHHHHHHHHhhc----ccccceecccccccchhhhhhhhhhccccccccccc
Confidence 344556779999999876 7788999999999999888 789999999999999888888888888888888887
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEeccc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSH 269 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~ 269 (458)
.. |.+.+++.+.+++++|+++.|+||+..+.|+++|+++||++|++++||.+.+.+.. .+.-++|+|+++.|.+
T Consensus 122 ~~-----d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~-~~Pl~~GaDiVvhS~T 195 (384)
T d1cs1a_ 122 QG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL-QNPLALGADLVLHSCT 195 (384)
T ss_dssp TT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-CCGGGGTCSEEEEETT
T ss_pred CC-----CHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCccc-ccccccCCCEEEEccc
Confidence 65 78999999999999999999999999999999999999999999999999987655 3333678999999999
Q ss_pred CCCCCCc---eeEEEEeccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 270 KMCGPTG---IGFLFGKSDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 270 K~~gp~g---~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
|++++.| .|+++.+.+. .+.+....... .++.+......+...|+. +...
T Consensus 196 Kyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~---------------------G~~~~p~~a~ll~rgL~T-----L~lR 249 (384)
T d1cs1a_ 196 KYLNGHSDVVAGVVIAKDPDVVTELAWWANNI---------------------GVTGGAFDSYLLLRGLRT-----LVPR 249 (384)
T ss_dssp TTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH---------------------TCBCCHHHHHHHHHHHTT-----HHHH
T ss_pred cccccCCCcccccccCCchhhhhhhhhhhhhh---------------------hhccccccHHHHhhccch-----hHHH
Confidence 9888777 6777775533 23332111111 123444333333333333 3445
Q ss_pred HHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCeE---eccCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGVA---TRSGH 411 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~---~~~g~ 411 (458)
.++..+++..+.+.|++.|.++ +..|.-..+ ...+++++|.+.+ +.++..+.+..- .+. .+-|.
T Consensus 250 m~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~-~~~~a~~f~~~L-~l~~~a~SlGg 327 (384)
T d1cs1a_ 250 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-DEQTLRRFLGGL-SLFTLAESLGG 327 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-CHHHHHHHHHTC-SSSEEBSCCCS
T ss_pred HHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecc-hHHHHHHHHHhC-CcceeccccCC
Confidence 5667788999999999998876 443321111 2346799999875 344444444432 332 22233
Q ss_pred CCC----h----------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 412 HCA----Q----------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 412 ~~~----~----------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
..+ + ......|. ++.||+|++. ||++.+++.|+++++..++
T Consensus 328 ~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl----Ed~eDLi~Dl~~AL~aa~~ 383 (384)
T d1cs1a_ 328 VESLISHAATMTHAGMAPEARAAAGISETLLRISTGI----EDGEDLIADLENGFRAANK 383 (384)
T ss_dssp SSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHTC
T ss_pred ccceeccccccccccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHHHhcC
Confidence 211 0 11123444 6789999998 8889999999999887653
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.91 E-value=1.3e-22 Score=190.58 Aligned_cols=301 Identities=18% Similarity=0.210 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEE
Q 012718 109 ATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188 (458)
Q Consensus 109 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v 188 (458)
..+..+.+++.+|++-|.. ..++++||..|+..++.++ +++||.|++++..|.....-+....++.|+++..+
T Consensus 65 ~nPt~~~LE~~la~LEgg~---~a~~~sSGMaAi~~~l~~l----~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~ 137 (398)
T d1qgna_ 65 GNPTTVVLEEKISALEGAE---STLLMASGMCASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETILPKMGITATVI 137 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH----SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred CChHHHHHHHHHHHHhCCc---eEEEecCcchHHHHHHhhc----ccccccccccccccchhhhhhcccccccccccccc
Confidence 3455667779999999876 7789999999999999988 78999999999999988877788888889999988
Q ss_pred eCCCCCCCCHHH-HHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEec
Q 012718 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAS 267 (458)
Q Consensus 189 ~~~~~~~~d~~~-l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s 267 (458)
+.. +.+. .++.+.+++++|+++.|.||+..+.|+++|+++||++|++++||.+.+.+.. .+.-++|+|+++.|
T Consensus 138 ~~~-----~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~-~~Pl~~GaDiVihS 211 (398)
T d1qgna_ 138 DPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN-QKALALGADLVLHS 211 (398)
T ss_dssp CSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-CCTTTTTCSEEEEC
T ss_pred ccc-----chhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeecccc-CCchhhCCCEEEEe
Confidence 754 4443 4455678999999999999999999999999999999999999999987765 34446789999999
Q ss_pred ccCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 268 SHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 268 ~~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
.+|++++.+ .|.+..+++.++.+..+... ..++.+......+...++. +..
T Consensus 212 ~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~---------------------~G~~l~p~~a~ll~rgl~T-----L~l 265 (398)
T d1qgna_ 212 ATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI---------------------LGGALNPNAAYLIIRGMKT-----LHL 265 (398)
T ss_dssp TTTTTTCSSSCCCEEEEECHHHHHHHHHHHHH---------------------HCCCCCHHHHHHHHHHGGG-----HHH
T ss_pred chhhcCcccceeehhhcchhhhhhhhhhhccc---------------------CCCcCCHHHHHHHHhcchH-----HHH
Confidence 999888776 67777776665554432211 1234444444444333333 344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCe---EeccC
Q 012718 345 IHAYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSG 410 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g 410 (458)
..++..+++..+.+.|++.|.++ |..|.-..+ ...+++++|.+.+ +.++..+.+..- .+ ..+-|
T Consensus 266 Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g-~~~~a~~f~~~L-~l~~~a~SlG 343 (398)
T d1qgna_ 266 RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG-DLLTTAKFVDAL-KIPYIAPSFG 343 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS-CHHHHHHHHHHC-SSSEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecC-CHHHHHHHHHcC-CcceeeeCCC
Confidence 55666788889999999998876 444432111 2346789998875 333333333322 32 22334
Q ss_pred CCCCh--------------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 411 HHCAQ--------------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 411 ~~~~~--------------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
...+- ......|. ++.||+|++. ||++.|++.|+++++++
T Consensus 344 g~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~AL~~i 398 (398)
T d1qgna_ 344 GCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALDSI 398 (398)
T ss_dssp SSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHHHC
T ss_pred CCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHhcC
Confidence 32221 11122343 6799999998 78888889888888753
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.4e-22 Score=190.58 Aligned_cols=301 Identities=13% Similarity=0.110 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+.+++.++++-|.. ..+.++||..|+..++.++ +++||.|+++...|.++..-+.....+.|+++..++
T Consensus 57 nPt~~~le~~la~LEg~~---~a~~~~SGMaAi~~~l~~l----~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d 129 (391)
T d1cl1a_ 57 TLTHFSLQQAMCELEGGA---GCVLFPCGAAAVANSILAF----IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFD 129 (391)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred ChhHHHHHHHHHHHhCCc---cEEEeccccceeeehhhcc----cCCCCeEEEecccccchhhhhhhccccccccccccc
Confidence 445566779999999876 7888999999999998888 789999999999999988878877788899999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh--cCcEEEEeccccCCcccCCCCCCCCcEEEec
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD--VGAKVLVDACQSVPHMVVDVQGLDADFLVAS 267 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~--~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s 267 (458)
.. |.+++++++++++++|+++.++||+..+.|+++|+++|++ +|++++||.+.+.+.. .+.-++|+|+++.|
T Consensus 130 ~~-----d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~-~~Pl~~GaDivvhS 203 (391)
T d1cl1a_ 130 PL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL-FKALDFGIDVSIQA 203 (391)
T ss_dssp TT-----CGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-SCGGGGTCSEEEEE
T ss_pred Cc-----cccccccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhh-hcccccccceEEee
Confidence 65 7788999999999999999999999999999999999976 5999999999987765 33335789999999
Q ss_pred ccCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 268 SHKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 268 ~~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
.+|++++.+ .|.++.+++..+.+..... ...++.+......+...++. +..
T Consensus 204 ~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~---------------------~~G~~~~p~~a~ll~rgl~T-----L~l 257 (391)
T d1cl1a_ 204 ATKYLVGHSDAMIGTAVCNARCWEQLRENAY---------------------LMGQMVDADTAYITSRGLRT-----LGV 257 (391)
T ss_dssp TTTTTTCSSSCCCEEEEECTTTHHHHHHHHH---------------------HTTCCCCHHHHHHHHHHHTT-----HHH
T ss_pred cchhccccccccccceeccccccccchhhhh---------------------cccccCCchhhhhhhccchh-----HHH
Confidence 999888776 7877777776554432211 11234444443333333333 344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCCC-CC----------cCccccEEEEEeCCC-ChHHHHHHHhhhcCeE---ecc
Q 012718 345 IHAYEMELAKYLYENLLSIPNIRIYGPKP-SE----------HVQRAALCSFNVENI-HPTDIATLLDQQYGVA---TRS 409 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~~~~~~~-~~----------~~~~~~~v~~~~~~~-~~~~~~~~l~~~~gi~---~~~ 409 (458)
..++..+++..+.+.|++.|.+..+..+. .. ....+++++|.+.+. +.+++.+.+..- .+. .+-
T Consensus 258 R~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~d~L-~l~~~a~Sl 336 (391)
T d1cl1a_ 258 RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNF-SLFSMAYSW 336 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTC-SSCBCCSCC
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHHHcC-CcceEeeCC
Confidence 55667788889999999998877443322 10 023356888988753 555566655433 432 233
Q ss_pred CCCCC------hhhHh------hcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 410 GHHCA------QPLHR------YLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 410 g~~~~------~~~~~------~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
|...+ ...+. ..|. ++.||+|++. ||++.+++.|+++++++
T Consensus 337 G~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~~i 390 (391)
T d1cl1a_ 337 GGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFARI 390 (391)
T ss_dssp CSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHHHT
T ss_pred CCCccceeCCcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHhh
Confidence 33211 11111 1233 5679999997 88888999999888764
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=1.1e-23 Score=200.13 Aligned_cols=293 Identities=15% Similarity=0.126 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEE-EEc-CCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEV-ILT-VAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 112 ~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~v-l~~-~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
..+++++..++.++.++.+++++++|+++|+..++.++ . +++.| +++ .++|++. ...++..|++++ +
T Consensus 51 ~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al----~-~~~~vi~~~~~~~~~~~----~~~~~l~g~~~v--~ 119 (366)
T d2aeua1 51 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL----K-PKKVIHYLPELPGHPSI----ERSCKIVNAKYF--E 119 (366)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH----C-CSEEEEECSSSSCCTHH----HHHHHHTTCEEE--E
T ss_pred hHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHh----C-CCCEEEEecCCCcchhH----HHHHHhcCCeEE--C
Confidence 34578888889998887778999999999999999987 3 45554 444 4788854 444566688754 3
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCc-ccccHHHHHHHHHhcCcEEEEeccccCCcccCC----CCCCCCcEE
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA-SILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD----VQGLDADFL 264 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG-~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~----~~~~~~d~~ 264 (458)
.+ |++++++++++++++|++++++||++ ...++++|+++|++||+++++|++|+.+..... ..+.+.|++
T Consensus 120 ~~-----d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~ 194 (366)
T d2aeua1 120 SD-----KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLV 194 (366)
T ss_dssp ES-----CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEE
T ss_pred CC-----CHHHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEE
Confidence 33 89999999999999999999988754 566799999999999999999999985543211 124468999
Q ss_pred EecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHH
Q 012718 265 VASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQK 344 (458)
Q Consensus 265 ~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 344 (458)
++|+||.+++.++||++.++++++.+....... ..+.+...+.++..+++.+.-..+++
T Consensus 195 ~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~---------------------g~~~~~~~~~a~~~aL~tl~~~r~~~ 253 (366)
T d2aeua1 195 VTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKF---------------------GLEAQPPLLAGIYRALKNFNLERIRK 253 (366)
T ss_dssp EEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTT---------------------TCBCCHHHHHHHHHHHHHCCHHHHHH
T ss_pred EecccccccccceeEEEecHHHHHHHHHHHhcc---------------------cccCCHHHHHHHHHHHHhccHHHHHH
Confidence 999999877677999999999888765432211 12334444445555555331111222
Q ss_pred HHHHHHH----HHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCC------ChHHHHHHHhhhcCeEeccCCCCC
Q 012718 345 IHAYEME----LAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENI------HPTDIATLLDQQYGVATRSGHHCA 414 (458)
Q Consensus 345 ~~~~~~~----l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~l~~~~gi~~~~g~~~~ 414 (458)
..++.++ +.+.+...+...++......... ...+++...... +..+++..|.+++||.+.|+..++
T Consensus 254 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p 329 (366)
T d2aeua1 254 AFERAKNFDLSKIEKLNKELKAIDDNINIVYERT----PTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMP 329 (366)
T ss_dssp HHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEEC----SSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSC
T ss_pred HHHHHHHHHHHHHhhhhccccccccccCcccccC----ccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCC
Confidence 2222222 22333333333333222111100 033444444322 234677777766799988875331
Q ss_pred hhhHhhcCCCCeEEEeeCCCCCHH-HHHHHHHHHHHHHH
Q 012718 415 QPLHRYLGVNASARASLHFYNTKE-DVDEFIHALNETVS 452 (458)
Q Consensus 415 ~~~~~~~g~~~~lRis~~~~~t~~-di~~l~~~l~~~~~ 452 (458)
+..+.+|||++..++++ +.+++++.|.+.++
T Consensus 330 -------~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK 361 (366)
T d2aeua1 330 -------GASKSLRIDLTSRDAERIDDNYIIKAIVESIK 361 (366)
T ss_dssp -------SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred -------CCCCEEEEeccccchhhCCHHHHHHHHHHHHH
Confidence 33679999998544333 45667777766665
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=6.4e-23 Score=192.83 Aligned_cols=323 Identities=13% Similarity=0.036 Sum_probs=215.3
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
..|.+..++++.|++++|+.++.. .+..++...+..+++|+.+|+++|.+. .++||+|||+|++.++.+
T Consensus 5 ~~f~s~n~~g~~P~v~~A~~~a~~---------~~~~~~~~~~~~~~l~~~la~~~g~~~--~v~f~~sGt~An~~a~~~ 73 (345)
T d1v72a1 5 LGFSSDNIAGASPEVAQALVKHSS---------GQAGPYGTDELTAQVKRKFCEIFERDV--EVFLVPTGTAANALCLSA 73 (345)
T ss_dssp CBCSCGGGCCCCHHHHHHHHHTTS---------SCCCSTTCSHHHHHHHHHHHHHHTSCC--EEEEESCHHHHHHHHHHT
T ss_pred cCcCCCCCCCCCHHHHHHHHHHhc---------cCccccCCCHHHHHHHHHHHHHHCCCc--EEEECCchHHHHHHHHHH
Confidence 445555566678889999876421 111222345678899999999999863 799999999999999987
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCC------c-eEEEEecccCcC
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRK------T-KLVVIHHISNML 221 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~-~~v~~~~~~n~t 221 (458)
+ ...++.+++....|.+....+. .....+..+..++...++..+++.+++.+... + ..++.....++.
T Consensus 74 ~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (345)
T d1v72a1 74 M----TPPWGNIYCHPASHINNDECGA-PEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEV 148 (345)
T ss_dssp S----CCTTEEEEECTTSHHHHSSTTH-HHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTT
T ss_pred H----HhcCCccccccccceeeechhh-HHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccc
Confidence 6 6778888888888776554332 33445777888887778888999999998753 2 244455555666
Q ss_pred ccccc---HHHHHHHHHhcCcEEEEeccccCCcccCC---C--CC--CCCcEEEecccCCCCCCceeEEEEeccccccCC
Q 012718 222 ASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVVD---V--QG--LDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291 (458)
Q Consensus 222 G~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~~---~--~~--~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~ 291 (458)
|...+ ++++.++|+++|+++++|+++..+..... + .. ...+.++.+.+|.+++.+ +.............
T Consensus 149 ~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 227 (345)
T d1v72a1 149 GSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAA-EAIVLFNTSLATEM 227 (345)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSC-EEEEESSGGGHHHH
T ss_pred cccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccc-cccccchhhhhhhc
Confidence 66555 67788899999999999999985433211 1 11 124455555555333332 33333322211110
Q ss_pred CccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Q 012718 292 PFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGP 371 (458)
Q Consensus 292 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~ 371 (458)
... ..+..++.+. ...+..++...+......+...+..++.+++.+.+.+++++.+..+
T Consensus 228 ~~~--------------------~~~~~~~~~~-~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p 286 (345)
T d1v72a1 228 SYR--------------------RKRAGHLSSK-MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG 286 (345)
T ss_dssp HHH--------------------HHHTTCCCSS-THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESC
T ss_pred ccc--------------------ccccccccch-hhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccC
Confidence 000 0011112222 2233334444444444667778888999999999999999998876
Q ss_pred CCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 372 KPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 372 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
.. ++++++.++ .++.+.|.++ |+.+..+. ..++.+||+++.++|+||||++++.|+++
T Consensus 287 ~~------~niv~~~~~----~~~~~~L~~~-gi~v~~~~----------~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 287 TE------ANILFCRLD----SAMIDALLKA-GFGFYHDR----------WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp CC------SSEEEEEEC----HHHHHHHHHT-TCBCBCSS----------SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred CC------ccEEEEEcC----HHHHHHHHHc-CCCccccC----------CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 53 678888876 4678888888 98875432 12679999999999999999999999864
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.91 E-value=1.2e-23 Score=201.66 Aligned_cols=274 Identities=13% Similarity=0.058 Sum_probs=191.2
Q ss_pred CcEEEeCChhHHHHHHHHHcCCC----CCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhh
Q 012718 130 GEIVFTKNATEAINLVAYSWGLS----NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEML 205 (458)
Q Consensus 130 ~~v~~t~g~t~a~~~~~~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l 205 (458)
.+|++++|+|+++..++.+|... .++||++|+++.|.|+ .+...++..|.+...++. |.+.+++.+
T Consensus 124 ~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~----~Y~~~~~~~~~~~~~~~~------D~~~~~~~~ 193 (425)
T d2hoxa1 124 RYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYP----VFREQTKYFDKKGYVWAG------NAANYVNVS 193 (425)
T ss_dssp CEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCH----HHHHHHHHSCBTTEEEEE------EGGGGTTCS
T ss_pred CEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccc----cHHHHHHHcCCCCCccCC------CHHHHHhhC
Confidence 37999999999999999998421 1578999999999998 556667777776555553 677888888
Q ss_pred cCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCCCCc--eeEEEEe
Q 012718 206 SRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG--IGFLFGK 283 (458)
Q Consensus 206 ~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~g--~G~l~~~ 283 (458)
+++++++++++|+||||.+.. +-.+++.+|.|++|.......-......++++.|+||.||.+| +||++++
T Consensus 194 ~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~ 266 (425)
T d2hoxa1 194 NPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIK 266 (425)
T ss_dssp CGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEEC
T ss_pred CCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchhhhcCCeEEEEeCHHhccCcchheeeEEeC
Confidence 889999999999999998742 2346899999999975443111233457999999999999888 9999887
Q ss_pred ccc-cccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHh----------CHHHHHHHHHHH
Q 012718 284 SDL-LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTI----------GMQKIHAYEMEL 352 (458)
Q Consensus 284 ~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~----------g~~~~~~~~~~l 352 (458)
++. .+.+..+.. +...+++...+.+...+++..... -++..++.+++.
T Consensus 267 ~~~i~~~~~~~~~---------------------~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r 325 (425)
T d2hoxa1 267 DESVYNNLLNYMT---------------------KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRER 325 (425)
T ss_dssp CHHHHHHHHHHHH---------------------HHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhc---------------------cCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653 344432221 111234444444444555432211 134556777888
Q ss_pred HHHHHHHHhcCCCEEEeCCCCC--------CcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCC-
Q 012718 353 AKYLYENLLSIPNIRIYGPKPS--------EHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGV- 423 (458)
Q Consensus 353 ~~~l~~~L~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~- 423 (458)
.+++.+.|.+...+.+...+.. .....+.+.|++.......++.+.|.+. ||.+++|..+ |.
T Consensus 326 ~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~-gI~v~pGs~F--------G~~ 396 (425)
T d2hoxa1 326 WVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNG-RINTQNGVGF--------EAS 396 (425)
T ss_dssp HHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHT-TEECEEGGGG--------TSC
T ss_pred HHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhC-CEEEEechhc--------CCC
Confidence 8889999988755544322110 0011234677777654444566667766 9999999844 32
Q ss_pred CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 424 NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 424 ~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
++++|||+. .+++++++++++|+++++
T Consensus 397 ~~yvRisl~--~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 397 SRYVRLSLI--KTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp TTEEEEECS--SCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 679999998 688999999999999986
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=5.2e-23 Score=192.55 Aligned_cols=297 Identities=22% Similarity=0.197 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
...+.+++.+|++-|.+ ..+.++||..|+..++ ++ +++||.|++....|.++...+.....+.|+++..++.
T Consensus 49 Pt~~~le~~la~LE~~~---~a~~fsSGMaAisall-~l----l~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~ 120 (380)
T d1ibja_ 49 PTRDALESLLAKLDKAD---RAFCFTSGMAALSAVT-HL----IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 120 (380)
T ss_dssp HHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHH-TT----SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred hHHHHHHHHHHHHcCCc---eEEehhhHHHHHHHHH-Hh----hCCCCEEEEEecccccccchhhhhhccccccccccCc
Confidence 33456779999999876 6778888899997544 44 7899999999999998887777777788999999876
Q ss_pred CCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccC
Q 012718 191 NDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270 (458)
Q Consensus 191 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 270 (458)
. |++.+++++++++++|+++.|+||+..+.|+++|+++||++|+++|||.+.+.+.. ...-++|+|+++.|.+|
T Consensus 121 ~-----~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~-~~Pl~~GaDiVvhS~TK 194 (380)
T d1ibja_ 121 T-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL-SRPLELGADIVMHSATK 194 (380)
T ss_dssp T-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT-CCGGGTTCSEEEEETTT
T ss_pred c-----hHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccccc-ccccccCCCEEEecccc
Confidence 5 88999999999999999999999999999999999999999999999999987665 22235689999999999
Q ss_pred CCCCCc---eeEEEEecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Q 012718 271 MCGPTG---IGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIH 346 (458)
Q Consensus 271 ~~gp~g---~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~ 346 (458)
++++.+ .|.++.+.+ +.+.+..... ...++++......+...++. ++...
T Consensus 195 yi~GhsDv~~G~v~~~~~~~~~~~~~~~~---------------------~~G~~l~p~~a~ll~rgl~T-----l~lRm 248 (380)
T d1ibja_ 195 FIAGHSDVMAGVLAVKGEKLAKEVYFLQN---------------------SEGSGLAPFDCWLCLRGIKT-----MALRI 248 (380)
T ss_dssp TTTCSSCCCCEEEEECSHHHHHHHHHHHH---------------------HTTCBCCHHHHHHHHHHHTT-----HHHHH
T ss_pred eeccccCccccccccchhhHHHHHHhhcc---------------------ccCCcCCHHHHHHHHhcchh-----hhhhH
Confidence 888777 788777754 3333332211 11234554444444444443 34455
Q ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCCCC----------CcCccccEEEEEeCCCChHHHHHHHhhhcCe---EeccCCC
Q 012718 347 AYEMELAKYLYENLLSIPNIR-IYGPKPS----------EHVQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSGHH 412 (458)
Q Consensus 347 ~~~~~l~~~l~~~L~~~~~~~-~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g~~ 412 (458)
++..+++..+.+.|++.|.++ +..|.-. .....++++.|.+.+ .+...+.+..- .+ ..+-|..
T Consensus 249 ~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~--~~~a~~f~d~l-~l~~~a~SlG~~ 325 (380)
T d1ibja_ 249 EKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS--VALSKHLVETT-KYFSIAVSFGSV 325 (380)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC--HHHHHHHHHHC-SSSEECSCCCSS
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccH--HHHHHHHHHhC-CcCeEeeccCCc
Confidence 667788888899998887665 3333211 012345677886653 33333333322 32 2222331
Q ss_pred CC------hhhH--------hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 413 CA------QPLH--------RYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 413 ~~------~~~~--------~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+ ...| ...|. ++.||||++. ||++.+++.|+++++.+
T Consensus 326 ~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl----E~~eDLi~Dl~qAl~~l 378 (380)
T d1ibja_ 326 KSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKTF 378 (380)
T ss_dssp SCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHSC
T ss_pred cccccCchhhhhhcCCHHHHHHcCCCcCeEEEEecc----CCHHHHHHHHHHHHHhc
Confidence 11 1111 12233 6789999997 78888999999988764
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.90 E-value=3.3e-24 Score=207.53 Aligned_cols=337 Identities=13% Similarity=-0.001 Sum_probs=211.5
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC------CCC-cE
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS------DSG-EI 132 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~------~~~-~v 132 (458)
++.|.|.-| +..+.++.+.++..........+ + +|....+..++|+++++++... .+. .+
T Consensus 30 ~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~-~------~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~ 102 (412)
T d1ajsa_ 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN-H------EYLPILGLAEFRTCASRLALGDDSPALQEKRVGG 102 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC-C------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcC-C------CCCCCCCCHHHHHHHHHHHhccCCccccccccee
Confidence 345666666 23356677777765543321111 1 1233455668899998887432 221 34
Q ss_pred EEeCChhHHHHHHHHHcC---CCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC-CC--CCCCCHHHHHHhh-
Q 012718 133 VFTKNATEAINLVAYSWG---LSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL-ND--DESPDLDKLKEML- 205 (458)
Q Consensus 133 ~~t~g~t~a~~~~~~~l~---~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~-~~--~~~~d~~~l~~~l- 205 (458)
+.|.+++.++..+..++. ...+++||.|++++|.|+ .+..+++..|++.+.++. .+ .+..|.+.+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~----~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~ 178 (412)
T d1ajsa_ 103 VQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWE----NHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLE 178 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCT----HHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHH
T ss_pred ecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcch----hhHHHHHHcCCeEEEeecccccccccccHHHHHHHHH
Confidence 566777766666554431 123689999999999999 556667777987655443 22 2456777766553
Q ss_pred --cCCceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc----------CCCCCCCCcEEEecccC
Q 012718 206 --SRKTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV----------VDVQGLDADFLVASSHK 270 (458)
Q Consensus 206 --~~~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~----------~~~~~~~~d~~~~s~~K 270 (458)
.++++++++++++||||.+++ +++|+++|++||++||+|++|..-... .........+++.|++|
T Consensus 179 ~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk 258 (412)
T d1ajsa_ 179 NAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSK 258 (412)
T ss_dssp HSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTT
T ss_pred hccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccc
Confidence 457899999999999999999 789999999999999999999732210 01122235688889999
Q ss_pred CCCCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH------HHHHhCH
Q 012718 271 MCGPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID------YLSTIGM 342 (458)
Q Consensus 271 ~~gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~ 342 (458)
.++.+| +|++++.....+.+.......... .+-..++++..+..++...+. .+.. .+
T Consensus 259 ~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 323 (412)
T d1ajsa_ 259 NFGLYNERVGNLTVVAKEPDSILRVLSQMQKI--------------VRVTWSNPPAQGARIVARTLSDPELFHEWTG-NV 323 (412)
T ss_dssp TSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH--------------HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH-HH
T ss_pred cccCCCCCccccccchhHHHHHHHHHHHHHHH--------------hhccccccchHHHHHHHHHhcCHHHHHHHHH-HH
Confidence 888777 999999987654443221100000 000112333333333333322 2222 25
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC---EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHh
Q 012718 343 QKIHAYEMELAKYLYENLLSIPN---IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHR 419 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~ 419 (458)
+..+++++++++.+.+.|+++.. +.+..+. .|.|+++ +.+. +.+++|.+++||++.+|.
T Consensus 324 ~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~------~G~F~~~---~ls~-~~v~~L~~e~gV~~vpg~-------- 385 (412)
T d1ajsa_ 324 KTMADRILSMRSELRARLEALKTPGTWNHITDQ------IGMFSFT---GLNP-KQVEYLINQKHIYLLPSG-------- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHC------CSSEEEC---CCCH-HHHHHHHHTTCEECCTTS--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCC------CeEEEec---CCCH-HHHHHHHHhCCEEEeCCC--------
Confidence 67788888889999999987621 2222222 1335443 3344 445566555599987652
Q ss_pred hcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 420 YLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 420 ~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
||+++. .++++|++++++|++++++++
T Consensus 386 --------Ri~~ag-~~~~~i~~~a~aI~~av~~~~ 412 (412)
T d1ajsa_ 386 --------RINMCG-LTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp --------EEEGGG-CCTTTHHHHHHHHHHHHHHCC
T ss_pred --------eEEecc-CCHHHHHHHHHHHHHHHHhcC
Confidence 999864 567899999999999998764
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.90 E-value=2.8e-22 Score=184.91 Aligned_cols=296 Identities=19% Similarity=0.243 Sum_probs=211.2
Q ss_pred HHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCC
Q 012718 115 LARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDE 194 (458)
Q Consensus 115 ~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~ 194 (458)
.+++.+|++-|.. ..+.++||..|+..++.++ +++||+|++++..|.++...+....++.|+++..++..
T Consensus 2 aLE~~la~Leg~~---~a~~~sSGMaAi~~~l~~l----l~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~--- 71 (331)
T d1pffa_ 2 ALEGKIAKLEHAE---ACAATASGMGAIAASVWTF----LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA--- 71 (331)
T ss_dssp HHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred HHHHHHHHHhCCC---eEEEECCHHHHHHHHHHHH----hCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc---
Confidence 4678899998876 6788899999999988888 79999999999999998888888888999999999876
Q ss_pred CCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHH-HhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCCC
Q 012718 195 SPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWS-HDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG 273 (458)
Q Consensus 195 ~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~-~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g 273 (458)
|++.+++++++++++|+++.+.||+..+.|++++.+++ +++|++++||.+.+.+.. .+.-++|+|+++.|.+|+++
T Consensus 72 --d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~-~~pl~~GaDiVv~S~TKy~~ 148 (331)
T d1pffa_ 72 --VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL-TNPLDLGVDIVVHSATKYIN 148 (331)
T ss_dssp --STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH-CCGGGGTCSEEEEETTTTTS
T ss_pred --chhhHhhhcccccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccc-ccccccCCCEEEecchhhcC
Confidence 78899999999999999999999999999999999885 678999999999986654 23336679999999999888
Q ss_pred CCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 012718 274 PTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEM 350 (458)
Q Consensus 274 p~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~ 350 (458)
+.+ .|.++.+++.......... .....++++......+...++.+. ...++..
T Consensus 149 Gh~d~~~G~v~~~~~~~~~~~~~~~-------------------~~~~G~~l~p~~a~ll~rgl~Tl~-----~Rm~~~~ 204 (331)
T d1pffa_ 149 GHTDVVAGLVCSRADIIAKVKSQGI-------------------KDITGAIISPHDAWLITRGTLTLD-----MRVKRAA 204 (331)
T ss_dssp SSSSCCCEEEEECHHHHHHHHHTCC-------------------CCCCCCCCCHHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred CCCccccccccccccchhhhhhhhh-------------------hhccCCCCCHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 766 7888887654322210000 011123455544555545555443 3445566
Q ss_pred HHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCe---EeccCCCCCh-
Q 012718 351 ELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGV---ATRSGHHCAQ- 415 (458)
Q Consensus 351 ~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi---~~~~g~~~~~- 415 (458)
+++..+.+.|++.|.++ +..|.-..+ ...+++++|.+.+ .++..+.+..- .+ .++-|...+-
T Consensus 205 ~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~--~~~~~~f~d~l-~lf~~~~SlG~~~SLi 281 (331)
T d1pffa_ 205 ENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG--LEKAKKVLDNC-HVVSLAVSLGGPESLI 281 (331)
T ss_dssp HHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--HHHHHHHHHTC-SSSEECSSCCSSSCEE
T ss_pred HHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeecc--HHHHHHHHHhC-CcceecccCCCCceeE
Confidence 77888888888887664 444331111 2346789999874 34444444332 33 2333442211
Q ss_pred --h-----------hHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 416 --P-----------LHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 416 --~-----------~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
| .....|. ++.+|+|++. ||.+.+++.|+++++.+
T Consensus 282 ~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl----E~~~DLi~Dl~~AL~~i 330 (331)
T d1pffa_ 282 QHPASMTHAGVPKEEREAAGLTDNLIRLSVGC----ENVQDIIDDLKQALDLV 330 (331)
T ss_dssp ECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHTC
T ss_pred eCccccccccCCHHHHHhcCCCcCeEEEEeee----CCHHHHHHHHHHHHHHh
Confidence 1 1122343 6789999998 78888888888888754
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.90 E-value=7.8e-22 Score=185.64 Aligned_cols=303 Identities=20% Similarity=0.231 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
....+.+.+.++++-|.. ..+.++||..|+..++.++ +++||.|++++..|.+....+.....+.|+++..++
T Consensus 58 nPT~~~le~~la~LEg~~---~a~~~sSGmaAi~~~~l~l----~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d 130 (394)
T d1e5ea_ 58 NPTVSNLEGKIAFLEKTE---ACVATSSGMGAIAATVLTI----LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFIN 130 (394)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCc---ceeeeccchHHHHHHHHhh----cccccccccccceeehhhHhHHHHhhccceeeeccC
Confidence 445556779999999886 6788889999999988887 789999999999999888777888889999999998
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHH-hcCcEEEEeccccCCcccCCCCCCCCcEEEecc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSH-DVGAKVLVDACQSVPHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~-~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~ 268 (458)
.. |++.+++.+++++++|+++.+.||+..+.|++++.+.++ ++|++++||.+.+.+.. .+.-++|+|+++.|.
T Consensus 131 ~~-----d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~-~~Pl~~GaDiVvhS~ 204 (394)
T d1e5ea_ 131 TA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMI-TNPVDFGVDVVVHSA 204 (394)
T ss_dssp TT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTT-CCGGGGTCSEEEEET
T ss_pred CC-----CHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCccc-CCchhcCCCEEEech
Confidence 76 778999999999999999999999999999999988766 57899999999987765 333467899999999
Q ss_pred cCCCCCCc---eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 269 HKMCGPTG---IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 269 ~K~~gp~g---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
+|++++.+ .|.++.+++.+...+.... .+...++++....+.+...++.+ ...
T Consensus 205 TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~-------------------~~~~G~~lsp~~a~ll~rgl~TL-----~lR 260 (394)
T d1e5ea_ 205 TKYINGHTDVVAGLICGKADLLQQIRMVGI-------------------KDITGSVISPHDAWLITRGLSTL-----NIR 260 (394)
T ss_dssp TTTTTCSSCCCCEEEEECHHHHHHHHHTCC-------------------CCCCCCCCCHHHHHHHHHHHTTH-----HHH
T ss_pred hhhcCCCcccccccccchhhHHHHHHHHHH-------------------HHhhCCCCChHHHHHHHhhchhH-----HHH
Confidence 99888777 7888888765443210000 11223445554444444444433 445
Q ss_pred HHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc----------CccccEEEEEeCCCChHHHHHHHhhhcCeE---eccCC
Q 012718 346 HAYEMELAKYLYENLLSIPNIR-IYGPKPSEH----------VQRAALCSFNVENIHPTDIATLLDQQYGVA---TRSGH 411 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~---~~~g~ 411 (458)
.++..+++..+.++|++.|.++ |..|.-..+ ...+++++|.+.+ ..++..+.+..- .+. .+-|.
T Consensus 261 m~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~-~~~~a~~f~~~l-~l~~~a~SlGg 338 (394)
T d1e5ea_ 261 MKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-GFEGAKKLLDNL-KLITLAVSLGG 338 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-HHHHHHHHHHTC-SSSEESSCCCS
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccC-CHHHHHHHHHhC-CccceeeccCC
Confidence 5667788999999999998875 554432211 2346789998765 222233333322 432 22232
Q ss_pred CCC----h----------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhh
Q 012718 412 HCA----Q----------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 412 ~~~----~----------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
.-+ + ......|. ++.||+|++. ||++.+++.|+++++.+.
T Consensus 339 ~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl----Ed~eDLi~Dl~qAl~~l~ 393 (394)
T d1e5ea_ 339 CESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALL 393 (394)
T ss_dssp SSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred ccceeECccccccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHHhh
Confidence 111 1 11122343 6789999997 788888888888887653
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=5e-25 Score=212.23 Aligned_cols=328 Identities=12% Similarity=0.081 Sum_probs=209.3
Q ss_pred eEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC-----CCcEEEeC
Q 012718 68 LVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-----SGEIVFTK 136 (458)
Q Consensus 68 ~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-----~~~v~~t~ 136 (458)
.|.|..| +..+.++.+.+|....... .. ...+|...++..++|+++++++.... .+.++.+.
T Consensus 28 kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~----~~---~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~ 100 (397)
T d3tata_ 28 KVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ----PH---GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQ 100 (397)
T ss_dssp CEECSCCSCCCTTSSCCCCHHHHHHHHHHTTS----CC---SSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECC
T ss_pred cEEccCCCCcCCCCCCCCcHHHHHHHHHHHhC----cc---cCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEec
Confidence 4677655 2335567777776544221 11 11123345667789999999886542 23666665
Q ss_pred ChhHH----HHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhc---C
Q 012718 137 NATEA----INLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLS---R 207 (458)
Q Consensus 137 g~t~a----~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~---~ 207 (458)
+++.+ +.+++..+ +.+||.|++++|+|+.. ...++..|++++.+|+..+ +..|.+.+.+.+. +
T Consensus 101 ~~~~~~~~~l~~~~~~~----~~pgd~Vlv~~P~y~~y----~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 172 (397)
T d3tata_ 101 TLGGSGALKVGADFLKR----YFPESGVWVSDPTWENH----VAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPA 172 (397)
T ss_dssp BSHHHHHHHHHHHHHHH----HCSSCCCEECSSCCTTH----HHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCS
T ss_pred CchhHHHHHHHHHHhhh----cCCCCcceecccCcccc----HHHHHHcCCEEEEEecchhhccccchHHHHHHhhhccc
Confidence 55543 44444444 68999999999999944 5566777999999998755 4567777766654 4
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc-------C--CCCCCCCcEEEecccCCCCCC
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV-------V--DVQGLDADFLVASSHKMCGPT 275 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~-------~--~~~~~~~d~~~~s~~K~~gp~ 275 (458)
+++++++++++||||.+++ +++|+++|+++++++|+|++|..-... . ........+++.|++|.++.+
T Consensus 173 ~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 252 (397)
T d3tata_ 173 RSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLY 252 (397)
T ss_dssp SCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBT
T ss_pred ccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccccccc
Confidence 6789999999999999999 678999999999999999999843210 0 011223568888999988887
Q ss_pred c--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH---HHHH--hCHHHHHHH
Q 012718 276 G--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID---YLST--IGMQKIHAY 348 (458)
Q Consensus 276 g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~---~~~~--~g~~~~~~~ 348 (458)
| +||++++...++............ ......+.+...+ .++...+. .... ..++.++++
T Consensus 253 G~RiG~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (397)
T d3tata_ 253 GERVGGLSVMCEDAEAAGRVLGQLKAT-------------VRRNYSSPPNFGA-QVVAAVLNDEALKASWLAEVEEMRTR 318 (397)
T ss_dssp TTCCBCCEEECSSTTHHHHHHHHHHHH-------------TTTTTSSCCSHHH-HHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred CccccccccchhHHHHHHHHHHHHHHH-------------hhcccccccHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 7 999999987765433221100000 0001122333333 33322222 1111 124556677
Q ss_pred HHHHHHHHHHHHhcC-CC--EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCC
Q 012718 349 EMELAKYLYENLLSI-PN--IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNA 425 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~-~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~ 425 (458)
++++++.+.+.|... +. +.+..+. .|.++|+.++ .+.+++|.+++||++.+|.
T Consensus 319 ~~~~r~~l~~~L~~~~~~~~~~~~~~~------~G~F~~~~ls----~e~~~~L~~e~~V~l~~g~-------------- 374 (397)
T d3tata_ 319 ILAMRQELVKVLSTEMPERNFDYLLNQ------RGMFSYTGLS----AAQVDRLREEFGVYLIASG-------------- 374 (397)
T ss_dssp HHHHHHHHHHTTTTTCTTSCTTHHHHC------CSSBCCCCCC----HHHHHHHTTTTCEECCSSS--------------
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEcCC------CceEEecCcC----HHHHHHHHHhCCEEeCCCC--------------
Confidence 777777888877665 11 2222222 2446666543 4667888777799987652
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 426 SARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 426 ~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
||+++. .++++|++++++|++++
T Consensus 375 --Ri~~a~-~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 375 --RMCVAG-LNTANVQRVAKAFAAVM 397 (397)
T ss_dssp --CCBTTS-CCTTTHHHHHHHHHHHC
T ss_pred --EEEecc-CCHHHHHHHHHHHHHhC
Confidence 888865 67789999999998764
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=3.3e-24 Score=206.41 Aligned_cols=330 Identities=12% Similarity=0.045 Sum_probs=212.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCC------CCC-cE
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS------DSG-EI 132 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~------~~~-~v 132 (458)
++.|+|.-| +..+.++.+.+++.+...+... + +|...++..++|+++++++... +.. .+
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~--~------~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~ 97 (396)
T d2q7wa1 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT--K------NYLGIDGIPEFGRCTQELLFGKGSALINDKRART 97 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC--C------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCC--C------CCCCCcCCHHHHHHHHHHHHhhcCCcccccceee
Confidence 345777665 2235668888888877664211 1 1223445668899999887433 121 23
Q ss_pred EEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhh---cC
Q 012718 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEML---SR 207 (458)
Q Consensus 133 ~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l---~~ 207 (458)
+.+.+++.+..+++..+. ...+||.|++++|+|+ .+...++..|++++.++...+ +..+...+.+.. .+
T Consensus 98 ~~~~~~~~~~~l~~~~l~--~~~~gd~Vlvp~P~y~----~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (396)
T d2q7wa1 98 AQTPGGTGALRVAADFLA--KNTSVKRVWVSNPSWP----NHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA 171 (396)
T ss_dssp EEESHHHHHHHHHHHHHH--HHSCCCEEEEEESCCT----HHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT
T ss_pred eccchHHHHHHHHHHHHh--hcccceEEEEecCCCc----cchHHHHHcCCeeEecccccccccccccchHHHHHHHhcc
Confidence 456677666665554431 2579999999999999 556677788999999998744 334555555543 44
Q ss_pred CceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc----C-----CCCCCCCcEEEecccCCCCCC
Q 012718 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV----V-----DVQGLDADFLVASSHKMCGPT 275 (458)
Q Consensus 208 ~~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~----~-----~~~~~~~d~~~~s~~K~~gp~ 275 (458)
+++++++++|+||||.+++ +++|+++|++|+++||+|++|..-... . ........+++.|++|.++.+
T Consensus 172 ~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~ 251 (396)
T d2q7wa1 172 GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLY 251 (396)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG
T ss_pred CcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccccc
Confidence 7789999999999999999 678999999999999999999833210 0 011223567778999988877
Q ss_pred c--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH------HHHHhCHHHHHH
Q 012718 276 G--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID------YLSTIGMQKIHA 347 (458)
Q Consensus 276 g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~~~~~~ 347 (458)
| +||++++...++.+.......... .+...++++..+..++...+. .+.+ .++.+++
T Consensus 252 G~R~G~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~~~~~~ 316 (396)
T d2q7wa1 252 NERVGACTLVAADSETVDRAFSQMKAA--------------IRANYSNPPAHGASVVATILSNDALRAIWEQ-ELTDMRQ 316 (396)
T ss_dssp GGCCEEEEEECSSHHHHHHHHHHHHHH--------------HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHH-HHHHC-C
T ss_pred CCCccccccchhHHHHHHHhhhhhhhh--------------hhccccCCCHHHHHHHHHHhcCchhHHHHHH-HHHHHHH
Confidence 7 999999987665443221100000 011123444444444433332 1111 2667788
Q ss_pred HHHHHHHHHHHHHhcCC-C--EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCC
Q 012718 348 YEMELAKYLYENLLSIP-N--IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVN 424 (458)
Q Consensus 348 ~~~~l~~~l~~~L~~~~-~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~ 424 (458)
+++++++.+.+.|+++. . +.+..++ .|.|+|+.++ .+.+++|.+++||++.+|+
T Consensus 317 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~------~G~F~~~~l~----~e~~~~L~~e~gV~~~~g~------------- 373 (396)
T d2q7wa1 317 RIQRMRQLFVNTLQEKGANRDFSFIIKQ------NGMFSFSGLT----KEQVLRLREEFGVYAVASG------------- 373 (396)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCTHHHHC------CSSEEECCCC----HHHHHHHHHHHCEECCTTC-------------
T ss_pred HHHHHHHHHHHHHHHhCCCCCcceecCC------CeEEEeeCCC----HHHHHHHHHhCCEEECCCC-------------
Confidence 88889999999998871 1 2222222 1556665443 3566777666699886542
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 425 ASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 425 ~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
||+++. .++++|++++++|.+++
T Consensus 374 ---Ri~~a~-l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 374 ---RVNVAG-MTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp ---EEEGGG-CCTTTHHHHHHHHHHHC
T ss_pred ---EEEecC-CCHHHHHHHHHHHHHhC
Confidence 999864 46789999999998764
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.90 E-value=1.3e-23 Score=203.02 Aligned_cols=337 Identities=14% Similarity=0.075 Sum_probs=210.5
Q ss_pred CeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCC-----CCcEE--
Q 012718 67 KLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD-----SGEIV-- 133 (458)
Q Consensus 67 ~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-----~~~v~-- 133 (458)
+.|+|..| +..+.++.+.++........ ...+ +|...++..++|+++++++.... ++.++
T Consensus 30 ~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~-~~~~------~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~ 102 (412)
T d1yaaa_ 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-SYNH------EYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISV 102 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-TCCC------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCc-ccCC------CCCCCCCCHHHHHHHHHHHhcccCccccccceeEE
Confidence 45777665 22345677877754443211 1111 12234556688999988874331 11232
Q ss_pred EeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhhc---CC
Q 012718 134 FTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEMLS---RK 208 (458)
Q Consensus 134 ~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l~---~~ 208 (458)
.+.+++.++..++..+. ...+||.|++++|.|+. +...++..|++++.++...+ +..|.+.+++.+. ++
T Consensus 103 ~~~~~~~~~~~~~~~~~--~~~~gd~Vlip~P~~~~----y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (412)
T d1yaaa_ 103 QSLSGTGALHISAKFFS--KFFPDKLVYLSKPTWAN----HMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEG 176 (412)
T ss_dssp EEEHHHHHHHHHHHHHH--HHCTTCCEEEEESCCTT----HHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTT
T ss_pred ecccchhHHHHHHHHHh--ccCCCCEEecccccCch----hHHHHHHcCCceecccccccccccccchhhhcccccCCCc
Confidence 23444544444432221 25799999999999994 46667778999999997643 4567777776664 46
Q ss_pred ceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc------------C-CCCCCCCcEEEecccCCC
Q 012718 209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV------------V-DVQGLDADFLVASSHKMC 272 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~------------~-~~~~~~~d~~~~s~~K~~ 272 (458)
++++++++++||||.+++ +++|+++|+++++++|+|++|..-... . ........+++.|+||.+
T Consensus 177 ~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 256 (412)
T d1yaaa_ 177 SIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA 256 (412)
T ss_dssp CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS
T ss_pred eEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCcc
Confidence 689999999999999999 789999999999999999999732210 0 012334568888999999
Q ss_pred CCCc--eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHH------HHHHhCHHH
Q 012718 273 GPTG--IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAID------YLSTIGMQK 344 (458)
Q Consensus 273 gp~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~~~ 344 (458)
+.+| +||++++++.++.+............. ..+....+++..........+. .+.+ .++.
T Consensus 257 ~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~~ 325 (412)
T d1yaaa_ 257 GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAK----------IIRSEVSNPPAYGAKIVAKLLETPELTEQWHK-DMVT 325 (412)
T ss_dssp CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH----------HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH-HHHH
T ss_pred ccCcCceEEEEEchhhhhhHHHHHHHHHHHHHH----------HHHHHhcCCChHHHHHHHHHhcChHHHHHHHH-HHHH
Confidence 9888 999999998765543221100000000 0001122333333333333332 1111 2567
Q ss_pred HHHHHHHHHHHHHHHHhcCC--C-EEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhc
Q 012718 345 IHAYEMELAKYLYENLLSIP--N-IRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~--~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~ 421 (458)
.++++++.++.+.+.|+++. + +.+..+. .|.++|..+ + .+++++|.+++||++.+|
T Consensus 326 ~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~------gG~F~~~~l---s-~e~~~~L~~e~~V~~~~g----------- 384 (412)
T d1yaaa_ 326 MSSRITKMRHALRDHLVKLGTPGNWDHIVNQ------CGMFSFTGL---T-PQMVKRLEETHAVYLVAS----------- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCTHHHHC------CSSEEECCC---C-HHHHHHHHHHHCEECCTT-----------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCceeCCC------ceEEEecCc---C-HHHHHHHHHhCCEEECCC-----------
Confidence 77888888899999887751 1 2222232 133555433 3 456777766669988654
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.||+++. .++++|+++.++|+++++.+
T Consensus 385 -----~Ris~~g-~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 385 -----GRASIAG-LNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp -----SEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred -----CEEEecc-CCHHHHHHHHHHHHHHHHhh
Confidence 3999864 56689999999999998754
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.90 E-value=2.9e-21 Score=184.36 Aligned_cols=341 Identities=15% Similarity=0.112 Sum_probs=224.3
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD 158 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~ 158 (458)
..++-.+++.+.++... +...+ ....+++++.+|+++|.+ .++.++|||.|+.+++.++ .+++||
T Consensus 11 ~~~~~~~~~~~~l~~g~------~~~~~---g~~v~~fE~~~a~~~g~~---~~v~~~SGt~Al~lal~~l---~~~~gd 75 (384)
T d1b9ha_ 11 YDDAERNGLVRALEQGQ------WWRMG---GDEVNSFEREFAAHHGAA---HALAVTNGTHALELALQVM---GVGPGT 75 (384)
T ss_dssp CCHHHHHHHHHHHHTSC------CBTTT---CSHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHT---TCCTTC
T ss_pred CCHHHHHHHHHHHHcCC------eeecC---CHHHHHHHHHHHHHHCcC---eEEEeCCHHHHHHHHHHHc---CCCCCC
Confidence 34555677777776421 01111 123556779999999998 7899999999999999998 589999
Q ss_pred EEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhc
Q 012718 159 EVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDV 237 (458)
Q Consensus 159 ~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~ 237 (458)
+|+++..+|.++..+ +...|++++.++++++ +.+|++.+++.+.+++++|++.+. .|...++++|.++|+++
T Consensus 76 eVi~p~~t~~a~~~a----i~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~---~g~~~d~~~i~~~~~~~ 148 (384)
T d1b9ha_ 76 EVIVPAFTFISSSQA----AQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHM---AGLMADMDALAKISADT 148 (384)
T ss_dssp EEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHH
T ss_pred EEEEecccccccccc----ccccccccccccccccccccchhhhcccccccccccccccc---cccccccccchhhhhhh
Confidence 999999999976443 4556999999998864 788999999999999999987666 88899999999999999
Q ss_pred CcEEEEeccccCCcccCC--CCCCCCcEEEec--ccCCCCCCceeEEEEec-cccccCCCccc-cCcceEeeecCCCCCC
Q 012718 238 GAKVLVDACQSVPHMVVD--VQGLDADFLVAS--SHKMCGPTGIGFLFGKS-DLLSAMPPFLG-GGEMISDVFLDHSTFA 311 (458)
Q Consensus 238 ~~~vivD~a~~~g~~~~~--~~~~~~d~~~~s--~~K~~gp~g~G~l~~~~-~~~~~l~~~~~-g~~~~~~~~~~~~~~~ 311 (458)
++.+|+|++|+.|+..-. +... .|+.++| .+|.++..+.|++++++ +..+.+..+.. |+.... ....|.
T Consensus 149 ~i~lieD~a~a~ga~~~g~~~g~~-g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~----~~~~~~ 223 (384)
T d1b9ha_ 149 GVPLLQDAAHAHGARWQGKRVGEL-DSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPR----DDRRYF 223 (384)
T ss_dssp TCCBCEECTTCTTCEETTEEGGGS-SSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCT----TCSSCC
T ss_pred hhhhhhhhceecccccCCEecCcc-cccceecccccccccccccchhhhhhHHHHHHHHHHHhcCCCCcc----cccccc
Confidence 999999999999886211 1122 3555554 56866544467777765 44444432222 111100 000110
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCCCC
Q 012718 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIH 391 (458)
Q Consensus 312 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 391 (458)
....++.. .++..+ +..++..+. .+++..++.+++.+++.+.|++++++...............+..|.++...
T Consensus 224 ~~~~G~n~-rms~l~---Aaig~~qL~--~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (384)
T d1b9ha_ 224 HKIAGSNM-RLNEFS---ASVLRAQLA--RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT 297 (384)
T ss_dssp CCSCCCBC-BCBHHH---HHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC
T ss_pred cccccccc-ccccch---hhhhhhhhh--hcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecccc
Confidence 00011111 122212 122333343 367788888999999999999998876554433211111224556665433
Q ss_pred ---hHHHHHHHhhhcCeEeccCCCCC--hhhHhhcCC-------------------CCeEEEeeCCCCC-HHHHHHHHHH
Q 012718 392 ---PTDIATLLDQQYGVATRSGHHCA--QPLHRYLGV-------------------NASARASLHFYNT-KEDVDEFIHA 446 (458)
Q Consensus 392 ---~~~~~~~l~~~~gi~~~~g~~~~--~~~~~~~g~-------------------~~~lRis~~~~~t-~~di~~l~~~ 446 (458)
.+++.+.|.++ ||.++.....- .+.+..+|. ...+.+-++...| ++|+++.++.
T Consensus 298 ~~~Rd~l~~~L~~~-GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~ 376 (384)
T d1b9ha_ 298 EERRNALVDRLVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEI 376 (384)
T ss_dssp HHHHHHHHHHHHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHC-CCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHH
Confidence 45799999998 99887542100 011111211 3568887776666 6799999999
Q ss_pred HHHHHHh
Q 012718 447 LNETVSF 453 (458)
Q Consensus 447 l~~~~~~ 453 (458)
|++++++
T Consensus 377 i~~~l~~ 383 (384)
T d1b9ha_ 377 IADAVAR 383 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=1.3e-22 Score=190.86 Aligned_cols=324 Identities=15% Similarity=0.151 Sum_probs=202.7
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 69 i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
+.|-..+.+.+++++++|+.+. +. +...+ ...+...++++.+|+++|.+ ++++++|||+|+..++.+
T Consensus 2 ~~~~~~~~t~p~p~v~~A~~~a------~~--g~~~y--g~~p~~~~le~~lA~~~G~~---~~~~~~sGt~A~~~al~a 68 (343)
T d1m6sa_ 2 IDLRSDTVTKPTEEMRKAMAQA------EV--GDDVY--GEDPTINELERLAAETFGKE---AALFVPSGTMGNQVSIMA 68 (343)
T ss_dssp EECSCGGGCCCCHHHHHHHHTC------CC--CCGGG--TCCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHhh------hc--CCccc--CCCHHHHHHHHHHHHHHCCC---eEEEeCCHHHHHHHHHHH
Confidence 4564444455567888888553 11 11111 12345668889999999976 789999999999999998
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC------Cce-EEEEecccCcC
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR------KTK-LVVIHHISNML 221 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~------~~~-~v~~~~~~n~t 221 (458)
+ .++|+.+++..+.|.+.... ...+...+..+..++.+ .+..|++.+++.+.. ++. +++...++++.
T Consensus 69 ~----~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 142 (343)
T d1m6sa_ 69 H----TQRGDEVILEADSHIFWYEV-GAMAVLSGVMPHPVPGK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSG 142 (343)
T ss_dssp H----CCTTCEEEEETTCHHHHSST-THHHHHTCCEEEEECEE-TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTT
T ss_pred H----hccCCceeccccccceeeec-ccccccccceeeccccc-cCccCHHHHHHhhhhhhcccccccccccccccccCC
Confidence 8 67899999999888754322 22333445566666543 455699999888875 234 44555666777
Q ss_pred ccccc---HHHHHHHHHhcCcEEEEeccccCCcccCCCC-----CCCCcEEEecccCCCCCCceeEEEEeccccccCCCc
Q 012718 222 ASILP---IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQ-----GLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 222 G~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~-----~~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~ 293 (458)
|.+.| +++|.++|+++|+++++|+++..+....... ....+..+.+.+|..+....|+.....+.+......
T Consensus 143 ~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 222 (343)
T d1m6sa_ 143 GRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKA 222 (343)
T ss_dssp SBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHH
T ss_pred ceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhhhHhh
Confidence 77776 5678888899999999999988543211110 112455666666644433456666665543332221
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
... ..++.......+. ......... ....+...++..++.+.+..+.+.....+.
T Consensus 223 ~~~---------------------~~~~~~~~~~~~a-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 277 (343)
T d1m6sa_ 223 RKM---------------------LGGGMRQAGVLAA-AGIIALTKM--VDRLKEDHENARFLALKLKEIGYSVNPEDV- 277 (343)
T ss_dssp HHH---------------------HTCCCSSTHHHHH-HHHHHHHHS--STTHHHHHHHHHHHHHHHHHHTCBCCGGGC-
T ss_pred Ccc---------------------cccccchhHHHHH-hhhhhhhhh--HHHHHHHHHHHHHhhhHHHHhccCccCCCC-
Confidence 110 0112221111211 111111111 112233344455555555544344333322
Q ss_pred CCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
..+++++.+++ .+..++.+.|.++ ||.+++.. ++++|++++..+|+||||+++++|++++
T Consensus 278 -----~~~~v~~~~~~~~~~a~~l~~~L~~~-Gi~v~~~~------------~~~iRi~~~~~~t~edid~~v~~l~~v~ 339 (343)
T d1m6sa_ 278 -----KTNMVILRTDNLKVNAHGFIEALRNS-GVLANAVS------------DTEIRLVTHKDVSRNDIEEALNIFEKLF 339 (343)
T ss_dssp -----CSSEEEEECTTSSSCHHHHHHHHHHH-TEECEEEE------------TTEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred -----CceEEEEEeCCCcccHHHHHHHHHHC-CCEEecCC------------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 15688888874 5678999999999 99987653 5689999999899999999999999999
Q ss_pred Hhh
Q 012718 452 SFF 454 (458)
Q Consensus 452 ~~~ 454 (458)
+++
T Consensus 340 ~~~ 342 (343)
T d1m6sa_ 340 RKF 342 (343)
T ss_dssp HHH
T ss_pred HHh
Confidence 986
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=8.2e-21 Score=179.22 Aligned_cols=318 Identities=16% Similarity=0.198 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+..+.+++.|+++-|.. ..+.++||..|+..++.++ +++||+|+++...|.++..-+.....+.|+++..++
T Consensus 57 nPT~~~LE~~la~LE~~~---~a~~~~SGmaAi~~~~~~l----~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d 129 (421)
T d2ctza1 57 NPTVDVLEKRLAALEGGK---AALATASGHAAQFLALTTL----AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS 129 (421)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH----CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC
T ss_pred CHHHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHhh----cccccceeecCCcCCchhHHHHHHHhhccccceecc
Confidence 344556779999999876 6788899999999999888 789999999999999988888888889999999886
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccC-CcccCCCCCCCCcEEEecc
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV-PHMVVDVQGLDADFLVASS 268 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~-g~~~~~~~~~~~d~~~~s~ 268 (458)
... +.+..++.+++++++|+++.|.||+..+.|+++|+++||++|++++||.+.+. +.. ...-++|+|+++.|.
T Consensus 130 ~~~----~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~-~~Pl~~GaDiVvhS~ 204 (421)
T d2ctza1 130 REE----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-LRPLAWGAALVTHSL 204 (421)
T ss_dssp TTC----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-CCGGGGTCSEEEEET
T ss_pred ccc----CcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccccccccee-ccccccCCcEEEEec
Confidence 542 34566777889999999999999999999999999999999999999999873 443 223367899999999
Q ss_pred cCCCCCCc---eeEEEEecccc-ccCCC-ccc----cCcceE--eeecCCCCCC----CCCCccCCCCCCHHHHHHHHHH
Q 012718 269 HKMCGPTG---IGFLFGKSDLL-SAMPP-FLG----GGEMIS--DVFLDHSTFA----DPPSRFEAGTPAIGEAIGLGAA 333 (458)
Q Consensus 269 ~K~~gp~g---~G~l~~~~~~~-~~l~~-~~~----g~~~~~--~~~~~~~~~~----~~~~~~~~gt~~~~~~~~l~~a 333 (458)
+|++++.+ .|.++.+++.. +..+. ... +..... +.... ..+. ....+...+..++.....+...
T Consensus 205 TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~sP~~a~l~~rg 283 (421)
T d2ctza1 205 TKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGE-LAFIVKARVDGLRDQGQALGPFEAWVVLLG 283 (421)
T ss_dssp TTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGG-GHHHHHHHHTHHHHHCCCCCHHHHHHHHHH
T ss_pred hhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhcc-HHHHHHHHHHHHHhccCCCCHHHHHHHhcC
Confidence 99888777 78877776532 22110 000 000000 00000 0000 0000001233444333333333
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE-EeCCCCCCc-----------CccccEEEEEeCCCChHHHHHHHhh
Q 012718 334 IDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIR-IYGPKPSEH-----------VQRAALCSFNVENIHPTDIATLLDQ 401 (458)
Q Consensus 334 l~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~-~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~~~l~~ 401 (458)
++. +....++..+++..+.+.|++.|.++ |..|.-..+ ...|++++|.+.+ +.+...+.+..
T Consensus 284 l~T-----L~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~-~~~~a~~f~~~ 357 (421)
T d2ctza1 284 MET-----LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG-GYEAAKRFISR 357 (421)
T ss_dssp HTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT-HHHHHHHHHHT
T ss_pred Ccc-----hhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecC-CHHHHHHHHHc
Confidence 332 34455667788899999999998875 554432111 1236699999975 22333333332
Q ss_pred hcCe---EeccCCCCC------h--------hhHhhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 402 QYGV---ATRSGHHCA------Q--------PLHRYLGV-NASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 402 ~~gi---~~~~g~~~~------~--------~~~~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
- .+ ..+-|...+ . ......|. ++.||+|++. ||++.+++.|++++
T Consensus 358 L-~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlSvGl----Ed~eDLi~DL~qAL 420 (421)
T d2ctza1 358 L-KLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----EHVEDLKAELKEAL 420 (421)
T ss_dssp C-SSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHT
T ss_pred C-CcCeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHhc
Confidence 2 33 223333111 1 11123344 6799999998 77777888887765
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.89 E-value=2.6e-21 Score=184.19 Aligned_cols=338 Identities=16% Similarity=0.101 Sum_probs=227.0
Q ss_pred CcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCC-
Q 012718 79 KPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSG- 157 (458)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g- 157 (458)
..++-.+++.+.++. +.... .+..+++++.+++++|.+ ++++++|||.|+.+++.++. ..+|
T Consensus 10 ~~~~~~~~v~~~l~~-------~~~~~----G~~v~~fE~~~~~~~g~k---~ai~~~Sgt~Al~~al~al~---~~~~~ 72 (371)
T d2fnua1 10 LDKEDKKAVLEVLNS-------KQLTQ----GKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNFS---EFSAD 72 (371)
T ss_dssp CCHHHHHHHHHHHTS-------SCCSS----SHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHSS---CCCTT
T ss_pred CCHHHHHHHHHHHcC-------CCccC----CHHHHHHHHHHHHHHCcC---eEEEEecHHHHHHHHHHHhc---ccCCC
Confidence 446667777777643 33222 234667779999999998 78999999999999999984 5444
Q ss_pred -CEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHh
Q 012718 158 -DEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHD 236 (458)
Q Consensus 158 -~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~ 236 (458)
++|+++..+|.++..++. ..|++++.++++++..++.+++++.+++++++|++.|. .|...++++|.++|++
T Consensus 73 ~~eVi~p~~t~~a~~~ai~----~~G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~---~G~~~~~~~i~~~~~~ 145 (371)
T d2fnua1 73 RNEIITTPISFVATANMLL----ESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKK 145 (371)
T ss_dssp SCEEEECSSSCTHHHHHHH----HTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHH
T ss_pred CCeeecccccccccceeee----ccCcccccccccccccccchhhhhhccchhhccccccc---cccccccccccccccc
Confidence 589999999997755444 45999999999988877888899999999999998876 8999999999999999
Q ss_pred cCcEEEEeccccCCcccCC--CCCCCCcEEEecc--cCCCCCCceeEEEEec-cccccCCCccccCcceEeeecCCCCCC
Q 012718 237 VGAKVLVDACQSVPHMVVD--VQGLDADFLVASS--HKMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFA 311 (458)
Q Consensus 237 ~~~~vivD~a~~~g~~~~~--~~~~~~d~~~~s~--~K~~gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~ 311 (458)
+|+++|+|++|++|+..-+ .... -|+.++|+ .|.++..+.|+++.++ ++.+.+......+. ..... ..+.
T Consensus 146 ~~i~lIEDaaqa~Ga~~~~~~~G~~-g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~-~~~~~---~~~~ 220 (371)
T d2fnua1 146 HSLSFLSDSSHALGSEYQNKKVGGF-ALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGM-LKKDF---FEGE 220 (371)
T ss_dssp HTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTE-EESSS---SCEE
T ss_pred cchhhccchhhccCceeccccCCcc-ccccccccccccccccccceEEEeechhhhhhccccccccc-ccccc---cccc
Confidence 9999999999999986322 1122 46666666 5866555567777765 44444443222111 11000 0000
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEEEEEeCC-
Q 012718 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALCSFNVEN- 389 (458)
Q Consensus 312 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~- 389 (458)
....++.. .++- +.+..++..+.. ++...++.+++++++.+.|.+.+++.+..+... .... ....+.+..
T Consensus 221 ~~~~G~n~-r~se---l~Aaigl~qL~~--l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~ 292 (371)
T d2fnua1 221 VKSIGHNF-RLNE---IQSALGLSQLKK--APFLMQKREEAALTYDRIFKDNPYFTPLHPLLK--DKSSNHLYPILMHQK 292 (371)
T ss_dssp ESSCCCBC-CCCH---HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCS--SCCCCSCEEEEECGG
T ss_pred cccccccc-cccc---hhhhhhhhhhhh--ccchhhhhhhhhhhhcccccccccccccccccc--ccccccccccccccc
Confidence 00011111 1222 222233444443 678888888999999999999988887654332 1112 233444442
Q ss_pred --CChHHHHHHHhhhcCeEeccCCCCC--hhhHhhc-CC----------CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 390 --IHPTDIATLLDQQYGVATRSGHHCA--QPLHRYL-GV----------NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 390 --~~~~~~~~~l~~~~gi~~~~g~~~~--~~~~~~~-g~----------~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
...+++.+.|.++ ||.++....+- .+.+..+ .. ...+.+-+++..+.+|++++++.|.++++++
T Consensus 293 ~~~~r~~~~~~L~~~-gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 293 FFTCKKLILESLHKR-GILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp GGGGHHHHHHHHHHT-TEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHC-CCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 2356799999988 99987543110 0111111 11 3578887888889999999999999998763
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.87 E-value=1.6e-21 Score=181.93 Aligned_cols=322 Identities=13% Similarity=0.095 Sum_probs=196.5
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHc
Q 012718 70 YLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSW 149 (458)
Q Consensus 70 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l 149 (458)
+|.+-....+.|++++++.+.... +..++...+..+++|+.+|+++|+++. +|+||+|+|+|++.++..+
T Consensus 3 ~f~nd~~~g~~P~v~eAl~~~~~~---------~~~~y~~~~~~~~lr~~ia~~~g~~~~-~v~~tsggtean~~a~~~~ 72 (340)
T d1svva_ 3 SFVNDYSVGMHPKILDLMARDNMT---------QHAGYGQDSHCAKAARLIGELLERPDA-DVHFISGGTQTNLIACSLA 72 (340)
T ss_dssp ECSCSCSSCCCHHHHHHHHHHTTC---------CCCSTTCSHHHHHHHHHHHHHHTCTTS-EEEEESCHHHHHHHHHHHH
T ss_pred CcccCCCCCCCHHHHHHHHHHhhc---------CCCCCCCCHHHHHHHHHHHHHhCCCcc-eEEEcCCHHHHHHHHHHHH
Confidence 453333334466799998875321 111223456778999999999999875 9999999999999999988
Q ss_pred CCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhc-C-----CceEEEEecccCcCcc
Q 012718 150 GLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLS-R-----KTKLVVIHHISNMLAS 223 (458)
Q Consensus 150 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~-~-----~~~~v~~~~~~n~tG~ 223 (458)
..+++.+++....|.+....... ...+.....+..... ..+.+...+... . ....+++....|+.|.
T Consensus 73 ----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (340)
T d1svva_ 73 ----LRPWEAVIATQLGHISTHETGAI--EATGHKVVTAPCPDG-KLRVADIESALHENRSEHMVIPKLVYISNTTEVGT 145 (340)
T ss_dssp ----CCTTEEEEEETTSHHHHSSTTHH--HHTTCCEEEECCTTS-CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSC
T ss_pred ----hhhccccccccccceeeeecccc--cccceeeeecccccc-cccchhHHHHhhhhhcccCCcceeeeecccccccc
Confidence 68888999988888765432222 222444444433322 223333322221 1 2344444444455666
Q ss_pred ccc---HHHHHHHHHhcCcEEEEeccccCCcccCCCCCCC-------CcEEEecccCCCCCCceeEEEEeccccccCCCc
Q 012718 224 ILP---IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLD-------ADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPF 293 (458)
Q Consensus 224 ~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~-------~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~ 293 (458)
+.+ +..+.+.|+++|.++++|+++..+..+.+..... .+....+..|..+..+.++..............
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (340)
T d1svva_ 146 QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHL 225 (340)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHH
T ss_pred cccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhh
Confidence 655 5567888999999999999998655544332221 455666666644444444444333322211111
Q ss_pred cccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Q 012718 294 LGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKP 373 (458)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 373 (458)
. ....++.+. ...+..+++..+...+.....++...+++++.+.|+.. |+++..|..
T Consensus 226 ~---------------------~~~~~~~~~-~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~ 282 (340)
T d1svva_ 226 I---------------------KQRGALMAK-GWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-GIRLAWPSA 282 (340)
T ss_dssp H---------------------HHTTCCCTT-THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCS
T ss_pred c---------------------ccccCccch-hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC-CCeeecCCC
Confidence 0 011122222 22333344444555556777888889999999999887 888776542
Q ss_pred CCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 374 SEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 374 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
++++.+.++ .+..+.|.++ ++...... ....++.+|+|+++++|++|||+++++|+++
T Consensus 283 ------~~~v~~~~~----~~~~~~l~~~-~~~~~~~~--------~~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 283 ------SNQLFPILE----NTMIAELNND-FDMYTVEP--------LKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp ------SSEECBEEE----HHHHHHHTTT-EECEEEEE--------ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred ------ceEEEEeCC----HHHHHHHHHh-hhhhcccc--------cCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 567777765 3566666665 43321111 0122678999999999999999999999863
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.1e-20 Score=175.26 Aligned_cols=339 Identities=14% Similarity=0.143 Sum_probs=238.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCC-cchhhhHHHHHHHH-HHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRG-IHFLSAKATDEYEL-ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
+-..+++.+++++...+...+..-..+ .++.|-...+.+|. +.++..++||+.. .-+-..||+.|+..++.++
T Consensus 34 SEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~--anVqp~SGs~AN~av~~Al--- 108 (416)
T d1dfoa_ 34 SENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY--ANVQPHSGSQANFAVYTAL--- 108 (416)
T ss_dssp TCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHH---
T ss_pred CcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCc--ceeecccCccHHHHHHHHh---
Confidence 344578888888887775432221112 22333344455554 6788889999873 2355679999999999999
Q ss_pred CCCCCCEEEEcCCCCccchHHHH-HHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcC-CceEEEEecccCcCcccccHHHH
Q 012718 153 NLKSGDEVILTVAEHHSAIVPWQ-LVAQKTGANLKFLNLNDDESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEEI 230 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~~~~-~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~i 230 (458)
++|||+|+..+..+.+++.--. .-+.....+.+.+++++++.+|.+++++.+.. ++++|++.. +.....+|++++
T Consensus 109 -l~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~--S~y~r~~d~~~~ 185 (416)
T d1dfoa_ 109 -LEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGF--SAYSGVVDWAKM 185 (416)
T ss_dssp -CCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEEC--SSCCSCCCHHHH
T ss_pred -cCCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEecc--cccccccCHHHH
Confidence 8999999999988876543111 11122246778888888889999999988765 889999874 445678889999
Q ss_pred HHHHHhcCcEEEEeccccCCcc-----cCCCCCCCCcEEEecccC-CCCCCceeEEEEec---cccccCCCccccCcceE
Q 012718 231 VHWSHDVGAKVLVDACQSVPHM-----VVDVQGLDADFLVASSHK-MCGPTGIGFLFGKS---DLLSAMPPFLGGGEMIS 301 (458)
Q Consensus 231 ~~l~~~~~~~vivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~---~~~~~l~~~~~g~~~~~ 301 (458)
.++|++.|+++++|.+|-.|.+ +-.+.. +|++++|+|| +.||. .|+++.++ +..+++......
T Consensus 186 reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~--aDvvt~tThKtlrGPr-ggiI~~~~~~~~~~~~i~~avfP----- 257 (416)
T d1dfoa_ 186 REIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH--AHVVTTTTHKTLAGPR-GGLILAKGGSEELYKKLNSAVFP----- 257 (416)
T ss_dssp HHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT--SSEEEEESSSTTCCCS-CEEEEESSCCHHHHHHHHHHHTT-----
T ss_pred HHHHHhcCceEEcchhhhhcceeccccCCcccc--cceeeeehhhcccCCC-ceEEEeccchHhHHHHHHhhhCc-----
Confidence 9999999999999999985433 323332 7999999999 56676 58888864 333333211111
Q ss_pred eeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCcccc
Q 012718 302 DVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAA 381 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 381 (458)
...|.+....+++.+.++.......+..+.+++.++++.|.+.|.+. |+++...... ..
T Consensus 258 ---------------g~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTd-----nH 316 (416)
T d1dfoa_ 258 ---------------GGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTD-----NH 316 (416)
T ss_dssp ---------------TTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCS-----SS
T ss_pred ---------------ccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCC-----Cc
Confidence 11356778888898888887655557899999999999999999998 9999854321 44
Q ss_pred EEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC----CCCHHHHHHHHHHHHHHHHh
Q 012718 382 LCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF----YNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 382 ~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~----~~t~~di~~l~~~l~~~~~~ 453 (458)
++.+.+. +.+..++.+.|.+. ||.+.-...+.-+ ..-..++.|||+... ...++|++++.+.|.++++.
T Consensus 317 lvlvdl~~~~~~G~~a~~~Le~~-gI~~Nkn~iP~d~--~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 317 LFLVDLVDKNLTGKEADAALGRA-NITVNKNSVPNDP--KSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp EEEEECGGGTCCHHHHHHHHHHT-TEECEECCCTTCS--SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred eeEEEecccCCCHHHHHHHHHHc-CeEEeCCcCCCCC--CCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 6677774 56778888888887 9988532211100 001126789998653 34789999999999998864
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.87 E-value=3.4e-20 Score=176.69 Aligned_cols=312 Identities=13% Similarity=0.129 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeC
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNL 190 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~ 190 (458)
+..+.+++.+++++|.+ .+++++|||.|+.+++.++ .+++||+|+++..+|.++..++.. .|++++.+++
T Consensus 21 ~~~~~fE~~~~~~~~~~---~~~~~~SgT~Al~lal~~l---~~~~gdeVi~p~~t~~a~~~~~~~----~g~~pv~~Di 90 (374)
T d1o69a_ 21 EFVNRFEQSVKDYSKSE---NALALNSATAALHLALRVA---GVKQDDIVLASSFTFIASVAPICY----LKAKPVFIDC 90 (374)
T ss_dssp HHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHT---TCCTTCEEEEESSSCGGGTHHHHH----TTCEEEEECB
T ss_pred HHHHHHHHHHHHHHCcC---eEEEeCCHHHHHHHHHHHc---CCCCcCEEEeCCcchHhhHHHHhh----ccceeEeccc
Confidence 34667889999999998 8899999999999999999 589999999999999988665544 4999999999
Q ss_pred CCCCCC-CHH--HHHHhhcCCceEEEEecccCcCcccccHHHHHHHHHhcCcEEEEeccccCCcccCC--CCCCCCcEEE
Q 012718 191 NDDESP-DLD--KLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVD--VQGLDADFLV 265 (458)
Q Consensus 191 ~~~~~~-d~~--~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~~~~~~vivD~a~~~g~~~~~--~~~~~~d~~~ 265 (458)
+++... +.+ ..+..+..+++++++.+. .|...++++|.++|+++|+.||+|++|++|+.--. +... .|+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~-gd~~~ 166 (374)
T d1o69a_ 91 DETYNIDVDLLKLAIKECEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTF-GEFGV 166 (374)
T ss_dssp CTTSSBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEE
T ss_pred ccccccccccccccchhccccccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCC-CceEE
Confidence 876432 333 334566678899998888 89999999999999999999999999999886221 2222 48888
Q ss_pred eccc--CCCCCCceeEEEEec-cccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH
Q 012718 266 ASSH--KMCGPTGIGFLFGKS-DLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM 342 (458)
Q Consensus 266 ~s~~--K~~gp~g~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 342 (458)
+||+ |.++..|.|+++.++ ++.+.+..+...+... ...+.....++.. .++. +.++.++..+.. +
T Consensus 167 fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~------~~~~~~~~~G~N~-rm~e---i~Aaig~~qL~~--l 234 (374)
T d1o69a_ 167 YSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQAREN------CLHYEHLDYGYNY-RLSN---VLGAIGVAQMEV--L 234 (374)
T ss_dssp EECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCS------SSSCCCSSCCCBC-BCCH---HHHHHHHHHHTT--H
T ss_pred EeccCccccccccceeehhhhHHHHHhhcccccccccc------ccccccccCCccc-cccc---hhhhhhHHHHhh--h
Confidence 8887 766655567777765 3443333221111000 0000000011111 1222 222233344433 5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccc-cEEEEEeC--------------------CCChHHHHHHHhh
Q 012718 343 QKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRA-ALCSFNVE--------------------NIHPTDIATLLDQ 401 (458)
Q Consensus 343 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--------------------~~~~~~~~~~l~~ 401 (458)
+.+.++.+++++++.+.|.+... +............ .++.+... .....++.+.|.+
T Consensus 235 ~~~i~~r~~i~~~y~~~L~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 312 (374)
T d1o69a_ 235 EQRVLKKREIYEWYKEFLGEYFS--FLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKN 312 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTEE--CCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHhhcccccc--ccccccCCCCChhheeeeeccccccccccccccccchhhccchhhHHHHHHHHHH
Confidence 77778888899999999977521 1111111000000 11111100 1125678999999
Q ss_pred hcCeEeccCCCCChhhHhhcCC-------------CCeEEEeeCCCCCHHHHHHHHHHHHHHHH
Q 012718 402 QYGVATRSGHHCAQPLHRYLGV-------------NASARASLHFYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 402 ~~gi~~~~g~~~~~~~~~~~g~-------------~~~lRis~~~~~t~~di~~l~~~l~~~~~ 452 (458)
+ ||.+++.... ......+.. ...+.+-+++..|.+|++++++.|.++++
T Consensus 313 ~-gI~~r~~y~p-l~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 313 K-QIETRPLWKA-MHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp T-TCCCBCCCCC-GGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred C-CCCEEEeCcc-hhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence 8 9988764321 100011100 34677878888899999999999998874
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.87 E-value=1.5e-20 Score=173.39 Aligned_cols=339 Identities=17% Similarity=0.163 Sum_probs=238.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCC-cchhhhHHHHHHHH-HHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRG-IHFLSAKATDEYEL-ARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS 152 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~ 152 (458)
+-..+++.+.+++...+...+..-+.+ .++.|-...+.+|. +.++..++||+.. .-+-..||+.|+..+..++
T Consensus 31 SEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~--anVqp~SGs~An~av~~al--- 105 (405)
T d1kl1a_ 31 SENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH--ANVQPHSGAQANMAVYFTV--- 105 (405)
T ss_dssp TCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSE--EECCCSSHHHHHHHHHHHH---
T ss_pred cCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCc--ceeeccCchHHHHHHHHHh---
Confidence 344577888888887775532211112 22333344455544 7788899999872 2355679999999999999
Q ss_pred CCCCCCEEEEcCCCCccchH-HHHHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcC-CceEEEEecccCcCcccccHHH
Q 012718 153 NLKSGDEVILTVAEHHSAIV-PWQLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSR-KTKLVVIHHISNMLASILPIEE 229 (458)
Q Consensus 153 ~~~~g~~vl~~~~~~~s~~~-~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~l~~ 229 (458)
++|||+|+..+..+.++.. ....-......+.+.++++++ +.+|.+++++.+.. ++++|++..-. .-..+|+++
T Consensus 106 -l~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~r~~d~~~ 182 (405)
T d1kl1a_ 106 -LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA--YPRIIDFAK 182 (405)
T ss_dssp -CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHH
T ss_pred -cCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccc--cccccChHH
Confidence 8999999988865544321 011111223568888888854 78999999998876 88999986644 345568999
Q ss_pred HHHHHHhcCcEEEEeccccCCc-----ccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCccccCcceEee
Q 012718 230 IVHWSHDVGAKVLVDACQSVPH-----MVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDV 303 (458)
Q Consensus 230 i~~l~~~~~~~vivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~ 303 (458)
+.++|++.|+++++|.+|-.|. .|-.+. .+|++++|.|| +.||. .|+++.+++..+++......+
T Consensus 183 ~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~--~aDvvt~tThKtlrGPr-gg~I~~~~~~~~~i~~avfPg------ 253 (405)
T d1kl1a_ 183 FREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP--YAHFVTTTTHKTLRGPR-GGMILCQEQFAKQIDKAIFPG------ 253 (405)
T ss_dssp HHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT--TCSEEEEESSSTTCCCS-CEEEEECHHHHHHHHHHHTTT------
T ss_pred HHHHHhhhCCEEecchhhHhhhhhhhhcCChhh--hhhheeccccccccCCC-CceEEecchhHHHHHhhhCcc------
Confidence 9999999999999999998443 333342 38999999999 56677 588888887665554222211
Q ss_pred ecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEE
Q 012718 304 FLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALC 383 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v 383 (458)
..|.+....+++.+.++.......+..+.+.+.++++.|.+.|.+. |+++....-. ..++
T Consensus 254 --------------~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd-----~H~v 313 (405)
T d1kl1a_ 254 --------------IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTD-----NHLL 313 (405)
T ss_dssp --------------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCS-----SSEE
T ss_pred --------------cccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCc-----ccee
Confidence 1367888899999999887655457889999999999999999987 9999864321 4467
Q ss_pred EEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC----CCCCHHHHHHHHHHHHHHHHh
Q 012718 384 SFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH----FYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 384 ~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~----~~~t~~di~~l~~~l~~~~~~ 453 (458)
++.+. +.+..+..+.|.+. ||.+.-...+.-+. .-..++.|||+.. ....++|+.++.+.|.++++.
T Consensus 314 lvdl~~~~~~g~~ae~~Le~a-gI~~Nkn~iP~d~~--~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 314 LVDLRPQQLTGKTAEKVLDEV-GITVNKNTIPYDPE--SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp EEECGGGTCCHHHHHHHHHHH-TEECEECCCTTCSS--CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred eccccccCCcHHHHHHHHHHc-CeEEcCCcCCCCCC--CCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 77774 56777777888887 99875222111000 0012578999865 334889999999999999853
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=3.7e-22 Score=191.88 Aligned_cols=328 Identities=14% Similarity=0.094 Sum_probs=204.9
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCC----CCCCcEEEe
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA----SDSGEIVFT 135 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~----~~~~~v~~t 135 (458)
++.|+|..| +..+.++.+.+++.+....... + +|...++..++|+++++++.. ......+++
T Consensus 26 ~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~--~------~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~ 97 (394)
T d2ay1a_ 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETT--K------TYAGLSGEPEFQKAMGELILGDGLKSETTATLAT 97 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC--C------CCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEE
T ss_pred CCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCC--C------CCCCCCCCHHHHHHHHHHHhccccccccccceec
Confidence 455777766 3335678899998887765221 1 112234455788888887632 111244555
Q ss_pred CChhHHH--HHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC--CCCCHHHHHHhh---cCC
Q 012718 136 KNATEAI--NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD--ESPDLDKLKEML---SRK 208 (458)
Q Consensus 136 ~g~t~a~--~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~--~~~d~~~l~~~l---~~~ 208 (458)
.+++.+. .+.+..+ .++||.|++++|.|+ .+...++..|++++.++...+ +..+.+.+++.. .++
T Consensus 98 ~~~~~~~~l~~~~~~~----~~~gd~V~~p~p~~~----~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (394)
T d2ay1a_ 98 VGGTGALRQALELARM----ANPDLRVFVSDPTWP----NHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKG 169 (394)
T ss_dssp EHHHHHHHHHHHHHHH----HCTTCCEEEEESCCH----HHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTT
T ss_pred cCchHHHHHHHHHhhh----cCCceEEEEeccccc----chHHHHHHcCCEEEEecccchhcccccchhHHHHHhhcccC
Confidence 5555444 4444444 689999999999999 456667778999999997643 334555554443 456
Q ss_pred ceEEEEecccCcCccccc---HHHHHHHHHhcCcEEEEeccccCCccc---------CCCCCCCCcEEEecccCCCCCCc
Q 012718 209 TKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVDACQSVPHMV---------VDVQGLDADFLVASSHKMCGPTG 276 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~g 276 (458)
++++++++++||||..++ +++|+++|++++++||+|++|..-... .........+++.|++|.++.+|
T Consensus 170 ~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G 249 (394)
T d2ay1a_ 170 DMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR 249 (394)
T ss_dssp CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG
T ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCc
Confidence 789999999999999999 778999999999999999999733211 00111224567779999877767
Q ss_pred --eeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHH-----HHHHHhCHHHHHHHH
Q 012718 277 --IGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAI-----DYLSTIGMQKIHAYE 349 (458)
Q Consensus 277 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al-----~~~~~~g~~~~~~~~ 349 (458)
+|++.+....++............ .......++...+..+..... +.+.+ .++.+++++
T Consensus 250 ~R~G~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 315 (394)
T d2ay1a_ 250 ERTGCLLALCADAATRELAQGAMAFL-------------NRQTYSFPPFHGAKIVSTVLTTPELRADWMA-ELEAVRSGM 315 (394)
T ss_dssp GCEEEEEEECSSHHHHHHHHHHHHHH-------------HHTTTSSCCCHHHHHHHHHHHSHHHHHHHHH-HHHHHHHHH
T ss_pred ccccchhhchhHHHHHHHhhhhhHhh-------------hcccccchhHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHH
Confidence 999999987654433211100000 000111233332322221111 11111 256778888
Q ss_pred HHHHHHHHHHHhcCC---CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCe
Q 012718 350 MELAKYLYENLLSIP---NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNAS 426 (458)
Q Consensus 350 ~~l~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~ 426 (458)
.++++.+.+.|+++. .+.+..+. .|.++|+.++ .+.+++|.+++||++.+|
T Consensus 316 ~~~r~~l~~~L~~~~~~~~~~~~~~~------~G~F~~~~ls----~~~~~~L~~~~~V~~~~g---------------- 369 (394)
T d2ay1a_ 316 LRLREQLAGELRDLSGSDRFGFVAEH------RGMFSRLGAT----PEQVKRIKEEFGIYMVGD---------------- 369 (394)
T ss_dssp HHHHHHHHHHHHHHHTSSTTTHHHHC------CSSEEECCCC----HHHHHHHHHHHCEECCTT----------------
T ss_pred HHHHHHHHHHHHHhCCCCceeeECCC------ceeEEecCcC----HHHHHHHHHhCCEEecCC----------------
Confidence 888999999887651 12222222 1446665443 456777776669998764
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHH
Q 012718 427 ARASLHFYNTKEDVDEFIHALNET 450 (458)
Q Consensus 427 lRis~~~~~t~~di~~l~~~l~~~ 450 (458)
.||+++. .++++|+++.++|+++
T Consensus 370 ~Ri~~a~-l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 370 SRINIAG-LNDNTIPILARAIIEV 392 (394)
T ss_dssp CEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred CEEEecC-CCHHHHHHHHHHHHHh
Confidence 3999864 5778999999999875
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1.3e-20 Score=176.92 Aligned_cols=298 Identities=18% Similarity=0.170 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+..+.+++.++++-|.. ..+.++||..|+..++. + +.+||.|+++...|.+....+.....+.|.++..++
T Consensus 54 nPT~~~lE~~la~LE~~~---~a~~~sSGmaAi~~~l~-~----l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~ 125 (393)
T d1n8pa_ 54 NPNRENLERAVAALENAQ---YGLAFSSGSATTATILQ-S----LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp CHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHH-T----SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred ChHHHHHHHHHHHHhCCc---eEEEecCchhHHHhhhh-c----ccCCCeeeeeeeecccchhhhhhhhhcccceeEEee
Confidence 344556779999998876 66778888888876654 4 578999999999999888777887788899888876
Q ss_pred CCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHHHHHHHHH----hcCcEEEEeccccCCcccCCCCCCCCcEEE
Q 012718 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSH----DVGAKVLVDACQSVPHMVVDVQGLDADFLV 265 (458)
Q Consensus 190 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~~i~~l~~----~~~~~vivD~a~~~g~~~~~~~~~~~d~~~ 265 (458)
. +.+++++.+++++++|+++.|.||+..+.|+++|+++|| ++|++++||.+.+.+.. .+.-++|+|+++
T Consensus 126 ~------~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~-~~Pl~~GADiVv 198 (393)
T d1n8pa_ 126 D------LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI-SNPLNFGADIVV 198 (393)
T ss_dssp S------HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CCGGGGTCSEEE
T ss_pred c------chHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCccc-CCchhhCCCEEE
Confidence 2 557899999999999999999999999999999999999 78999999999986654 223366899999
Q ss_pred ecccCCCCCCc---eeEEEEecc-ccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC
Q 012718 266 ASSHKMCGPTG---IGFLFGKSD-LLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG 341 (458)
Q Consensus 266 ~s~~K~~gp~g---~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 341 (458)
.|.+|++++.+ .|.++.+++ +.+.+..... ...+++++.....+...++.
T Consensus 199 hS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~---------------------~~G~~~~p~~a~ll~rgl~T----- 252 (393)
T d1n8pa_ 199 HSATKYINGHSDVVLGVLATNNKPLYERLQFLQN---------------------AIGAIPSPFDAWLTHRGLKT----- 252 (393)
T ss_dssp EETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH---------------------HHCCCCCHHHHHHHHHHHTT-----
T ss_pred EccccccCCCCccccceeeecchhHHHHHHHHHh---------------------hcCCCCChHHHHHHHhCCcc-----
Confidence 99999888777 677776653 4444432211 11234444443444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCEE-EeCCCCCCc------------CccccEEEEEeCCCChHHHHHHHhhhcCe--
Q 012718 342 MQKIHAYEMELAKYLYENLLSI-PNIR-IYGPKPSEH------------VQRAALCSFNVENIHPTDIATLLDQQYGV-- 405 (458)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~L~~~-~~~~-~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~~~~l~~~~gi-- 405 (458)
+....++..+++..+.+.|++. +.++ +..|.-..+ ...+++++|.+.+ ..+...+.+..- .+
T Consensus 253 l~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~-~~~~~~~f~~~l-~l~~ 330 (393)
T d1n8pa_ 253 LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG-GAEAASKFASST-RLFT 330 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS-CHHHHHHHHHHC-SSSE
T ss_pred hhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeC-CHHHHHHHHHhC-Ccce
Confidence 3445566677888888888764 5454 333321111 1225699999975 333333333322 33
Q ss_pred -EeccCCCCC------hhhH--------hhcCC-CCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 406 -ATRSGHHCA------QPLH--------RYLGV-NASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 406 -~~~~g~~~~------~~~~--------~~~g~-~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
..+-|...+ ...+ ...|. ++.||||++. ||++.+++.|++++++.
T Consensus 331 ~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGl----E~~~DLi~Dl~~AL~~a 391 (393)
T d1n8pa_ 331 LAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGI----EDTDDLLEDIKQALKQA 391 (393)
T ss_dssp ECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred ecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHHh
Confidence 222233111 0111 12232 5789999997 78888888888888754
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.1e-19 Score=172.57 Aligned_cols=325 Identities=16% Similarity=0.167 Sum_probs=223.7
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|.-.+.+.+++.+.+++....+.. . ..+...++.+.+.+...... +.+.|+++|+
T Consensus 35 dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~---~----~~~~~~~la~~l~~~~~~~~-~~v~f~~sGs 106 (387)
T d1vefa1 35 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQT---L----PTPMRGEFYRTLTAILPPEL-NRVFPVNSGT 106 (387)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTT---S----CCHHHHHHHHHHHHTSCTTE-EEEEEESSHH
T ss_pred CCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccc---c----CCchHHHHHHHhhhhccccc-eeeccccCch
Confidence 344566643 25567789999999988764322211 0 01222233344444433322 3789999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHH----HHcC-----CeEEEEeCCCCCCCCHHHHHHhhcCCce
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVA----QKTG-----ANLKFLNLNDDESPDLDKLKEMLSRKTK 210 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a----~~~g-----~~~~~v~~~~~~~~d~~~l~~~l~~~~~ 210 (458)
+|++.+++..+ ......+|+....+||+.......+. .+.+ ..+..+|.+ |++.|++.+++++.
T Consensus 107 eA~e~Aik~Ar--~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~~~~~iA 179 (387)
T d1vefa1 107 EANEAALKFAR--AHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-----DVEALKRAVDEETA 179 (387)
T ss_dssp HHHHHHHHHHH--HHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT-----CHHHHHHHCCTTEE
T ss_pred HHHHHHHHHHH--hhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC-----CHHHHHHhcCCCeE
Confidence 99999998764 24566789999999998765443321 0101 234555544 88999999999999
Q ss_pred EEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcccC----CCCCCCCcEEEecccCC-CCCCceeEE
Q 012718 211 LVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMVV----DVQGLDADFLVASSHKM-CGPTGIGFL 280 (458)
Q Consensus 211 ~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~~----~~~~~~~d~~~~s~~K~-~gp~g~G~l 280 (458)
+|+++.++...|...+ +++|.++|++||+++|.|+++. +|.... ..-...+|+++ +.|. .|+..++.+
T Consensus 180 avi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~--~gK~l~gG~~~~~~ 257 (387)
T d1vefa1 180 AVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILT--LAKALGGGVPLGVA 257 (387)
T ss_dssp EEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECGGGGTTSSCEEE
T ss_pred EEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceee--ecccCCCCcccccc
Confidence 9999999998898877 9999999999999999999996 433311 11134589999 6684 344447888
Q ss_pred EEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 012718 281 FGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENL 360 (458)
Q Consensus 281 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L 360 (458)
..+++..+.+.+...+.+ -+.++...++..+.|+.+.+ +.+.++.+++.+++.+.|
T Consensus 258 ~~~~~~~~~~~~~~~g~T---------------------~~gnPla~aaa~a~L~~l~~---~~~~~~v~~~g~~l~~~L 313 (387)
T d1vefa1 258 VMREEVARSMPKGGHGTT---------------------FGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKL 313 (387)
T ss_dssp EEEHHHHHTSCTTSSCCS---------------------STTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHH
T ss_pred ccceeeeeccccCCcccc---------------------CCCCcchhhhcccchhhccc---ccccchHhhhhHHHHHHH
Confidence 888877766655433221 24567777777788888876 456677778888899988
Q ss_pred hcCC--CEEEeCCCCCCcCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHH
Q 012718 361 LSIP--NIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKE 438 (458)
Q Consensus 361 ~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~ 438 (458)
+++. .+. .. ...|.+..+.+.......+.+.+.++ |+.+.+.. ++.+|+++++..|++
T Consensus 314 ~~l~~~~v~---~v----rg~Gl~~~ie~~~~~~~~~~~~~~~~-g~l~~~~g------------~~~ir~~Ppl~it~~ 373 (387)
T d1vefa1 314 RAIPSPKIR---EV----RGMGLMVGLELKEKAAPYIARLEKEH-RVLALQAG------------PTVIRFLPPLVIEKE 373 (387)
T ss_dssp HTSCCTTEE---EE----EEETTEEEEEESSCSHHHHHHHHHHH-CEECEESS------------TTEEEECCCTTCCHH
T ss_pred HhcCCCceE---EE----eecceEEEEEEeCCchHHHHHHHHHC-CCeEEecC------------CCEEEEECCccCCHH
Confidence 8762 221 11 23356788888776667777777778 88765432 568999999889999
Q ss_pred HHHHHHHHHHHHH
Q 012718 439 DVDEFIHALNETV 451 (458)
Q Consensus 439 di~~l~~~l~~~~ 451 (458)
||+++++++++++
T Consensus 374 ~ld~~~~~i~~aL 386 (387)
T d1vefa1 374 DLERVVEAVRAVL 386 (387)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=3.4e-19 Score=169.10 Aligned_cols=356 Identities=18% Similarity=0.161 Sum_probs=241.1
Q ss_pred EecCCCCC-CCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHH
Q 012718 70 YLDNAATS-QKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYS 148 (458)
Q Consensus 70 ~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~ 148 (458)
++..|+.+ ..|+.+ +.+......+...+- ..-..+.+.-+.+-++++.|+++.|.+.. +.-.-.|++.....++.+
T Consensus 68 fig~G~~~~~~p~~i-~~~~~~~~~~t~ytP-yqpE~sQG~Lq~l~e~q~~l~eltGmd~~-n~s~~~ga~a~~~~~~~~ 144 (437)
T d1wyua1 68 FLGGGVRSHHVPPVV-QALAARGEFLTAYTP-YQPEVSQGVLQATFEYQTMIAELAGLEIA-NASMYDGATALAEGVLLA 144 (437)
T ss_dssp CCCSSCCCCCCCHHH-HHHHTSHHHHHCCSC-CSGGGCHHHHHHHHHHHHHHHHHHTSSEE-CSCBSSHHHHHHHHHHHH
T ss_pred ccCcccCCceeCHHH-HHHHhChhhhhhCCC-cchHHHHHHHHHHHHHHHHHHHhhCCCcc-ccCchHHHHHHHHHHHHH
Confidence 44445444 456554 444433333322221 12234456777888999999999999843 444556777777766665
Q ss_pred cCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCcccccHH
Q 012718 149 WGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228 (458)
Q Consensus 149 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~l~ 228 (458)
. ...++++++++...|++.+......++..|++++.++.++++. +.+ .+++++..|++.+| |..|.+-+++
T Consensus 145 ~---~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~-~~~----~~~~~~Aavmi~~P-nt~G~~ed~~ 215 (437)
T d1wyua1 145 L---RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRT-PLP----EVGEEVGAVVVQNP-NFLGALEDLG 215 (437)
T ss_dssp H---HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBC-CCC----CCCTTEEEEEEESS-CTTSBCCCHH
T ss_pred H---hhhcccccccccccChHHhhhhhhhcccceeeEEeeecccccc-hhh----hhccceeEEEEccc-cccccccchH
Confidence 5 2456778999999999988888888999999999999875543 222 25778999999999 6689999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCCCCCCCcEEEecccCCC-----CCCceeEEEEeccccccCCCccccCcceE--
Q 012718 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC-----GPTGIGFLFGKSDLLSAMPPFLGGGEMIS-- 301 (458)
Q Consensus 229 ~i~~l~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-----gp~g~G~l~~~~~~~~~l~~~~~g~~~~~-- 301 (458)
+|.+++|+.|.++++|+....-.......++|+|+++++.+++. |+++.|++.+++++.+.++....|-..-.
T Consensus 216 ~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G 295 (437)
T d1wyua1 216 PFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEG 295 (437)
T ss_dssp HHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTS
T ss_pred HHHHHhhhccceEEeeechhhhhccccccccccceEeeccceeccccCCCcCccccccccchhhccccccccccccccCC
Confidence 99999999999888876543222213345678999999944443 34448999999999888876554321100
Q ss_pred --eeecCCCCCC----CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Q 012718 302 --DVFLDHSTFA----DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE 375 (458)
Q Consensus 302 --~~~~~~~~~~----~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~ 375 (458)
........-. .....-..+|............+.++...|+.++.++...+++|+.+.|.+++++++..+.+.
T Consensus 296 ~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~- 374 (437)
T d1wyua1 296 RRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPF- 374 (437)
T ss_dssp CEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSB-
T ss_pred cccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCe-
Confidence 0000000000 000111134555555555566677888889999999999999999999999989987655421
Q ss_pred cCccccEEEEEeCCCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHH
Q 012718 376 HVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 451 (458)
Q Consensus 376 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~ 451 (458)
..-+.+++ +.+..++.++|.+. |+....-. .. +-.++.+.+++.-..|.+|||+++++|++++
T Consensus 375 ----f~ef~v~~-~~~~~~i~k~L~d~-G~~~~~~~------~~-~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 375 ----FNEFALAL-PKDPEAVRRALAER-GFHGATPV------PR-EYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp ----CSEEEEEC-SSCHHHHHHHHHHT-TCCCCEEC------CT-TSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ----eeEEEEEC-CCCHHHHHHHHHhC-CCCCCccc------cc-CCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 22334444 34688999999988 98643211 01 1126789999998899999999999998874
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.83 E-value=1.1e-17 Score=159.94 Aligned_cols=336 Identities=15% Similarity=0.184 Sum_probs=212.0
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|--.+.+.+++.+.+.+..... ...+ ....+.+.+.++++.+.+ .+.|+.+++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~---~v~~~~sgs 106 (404)
T d1z7da1 37 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICS-RAFF------SVPLGICERYLTNLLGYD---KVLMMNTGA 106 (404)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCC-TTSE------EHHHHHHHHHHHHHHTCS---EEEEESSHH
T ss_pred CCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcc-cccc------hHHHHHHHHhhhhccccc---eeeeecccc
Confidence 445677643 244567889999988876532211 1111 122345566777777664 889999999
Q ss_pred HHHHHHHHHcCC-----C-CCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCC----CCCCHHHHHHhhcC-C
Q 012718 140 EAINLVAYSWGL-----S-NLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDD----ESPDLDKLKEMLSR-K 208 (458)
Q Consensus 140 ~a~~~~~~~l~~-----~-~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~----~~~d~~~l~~~l~~-~ 208 (458)
+|+..++...+. . ......+++....+|++..............+....|..+. -.-+.+.++..+.+ +
T Consensus 107 ~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (404)
T d1z7da1 107 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPN 186 (404)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTT
T ss_pred chHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCC
Confidence 999998875421 0 12233478888888886654333222111111111111110 11266777777765 6
Q ss_pred ceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCCC--Cce
Q 012718 209 TKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCGP--TGI 277 (458)
Q Consensus 209 ~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~gp--~g~ 277 (458)
+.+|+++.++...|.+.| +++|.++|+++|+++|+|+++. +|.. ........+|+++ ++|.+|. ..+
T Consensus 187 iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt--~gK~l~gG~~p~ 264 (404)
T d1z7da1 187 VCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVIL--LGKALSGGHYPI 264 (404)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTSSCC
T ss_pred EEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEE--EcccccCCCCCc
Confidence 799999999999999887 8999999999999999999996 3221 1112234589997 7784432 348
Q ss_pred eEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHH
Q 012718 278 GFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM-QKIHAYEMELAKYL 356 (458)
Q Consensus 278 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~-~~~~~~~~~l~~~l 356 (458)
|.+++++++.+.+.+...+. +-+.++...++..+.|+.+.+..+ +.+.+....+.+.+
T Consensus 265 ~~v~~~~~i~~~~~~~~~~~---------------------T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l 323 (404)
T d1z7da1 265 SAVLANDDIMLVIKPGEHGS---------------------TYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENL 323 (404)
T ss_dssp EEEEECHHHHTTCCTTCCCC---------------------TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHccCCCCCcCc---------------------CCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHH
Confidence 99999999887776543321 124567777777788887766543 33444455556666
Q ss_pred HHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC--CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCC
Q 012718 357 YENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN--IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFY 434 (458)
Q Consensus 357 ~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~ 434 (458)
.+.+++.+.+.-. ...|.+..+.+.+ ....++...+.++ |+.+.+.. ++.||+++++.
T Consensus 324 ~~~~~~~~~v~~v-------rg~Gl~~~i~~~~~~~~~~~~~~~l~~~-Gl~~~~~~------------~~~ir~~Ppl~ 383 (404)
T d1z7da1 324 KRELKDSKIVRDV-------RGKGLLCAIEFKNELVNVLDICLKLKEN-GLITRDVH------------DKTIRLTPPLC 383 (404)
T ss_dssp HHHHTTCTTEEEE-------EEETTEEEEEECTTTCCHHHHHHHHHHT-TEECCEET------------TTEEEECCCTT
T ss_pred HHHHhcCCCeEEE-------EeeCcEEEEEEcCCcccHHHHHHHHHhC-CeEEecCC------------CCEEEEECCcC
Confidence 6666666544321 1235677777763 4456788889988 99986533 56899999988
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 012718 435 NTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 435 ~t~~di~~l~~~l~~~~~~~ 454 (458)
.|++|||++++.|+++++++
T Consensus 384 it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 384 ITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999875
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=5.3e-18 Score=161.85 Aligned_cols=329 Identities=12% Similarity=0.136 Sum_probs=223.2
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|...+.+.+++.+.++....... ..+ ......+.+.++++.+.+ .+.++++|+
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~---~v~~~~sGs 108 (404)
T d2byla1 39 EGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSR-AFY------NNVLGEYEEYITKLFNYH---KVLPMNTGV 108 (404)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCT-TEE------ESSHHHHHHHHHHHHTCS---EEEEESSHH
T ss_pred CCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCccc-ccc------cchHHHHHHhhhhccccc---ccccccCcc
Confidence 445667643 2456788899999998875432211 111 122334556677777664 899999999
Q ss_pred HHHHHHHHHcCC------CCCCCCCEEEEcCCCCccchHHHHHH----HHHcCC-----eEEEEeCCCCCCCCHHHHHHh
Q 012718 140 EAINLVAYSWGL------SNLKSGDEVILTVAEHHSAIVPWQLV----AQKTGA-----NLKFLNLNDDESPDLDKLKEM 204 (458)
Q Consensus 140 ~a~~~~~~~l~~------~~~~~g~~vl~~~~~~~s~~~~~~~~----a~~~g~-----~~~~v~~~~~~~~d~~~l~~~ 204 (458)
+|+..+++..+. .....+.+++....+|++........ ..+.+. .+..+|.+ |++.+++.
T Consensus 109 eA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~ 183 (404)
T d2byla1 109 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERA 183 (404)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT-----CHHHHHHH
T ss_pred ccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc-----CHHHHHHh
Confidence 999999987531 01123457888888888664332221 111111 23445543 88999999
Q ss_pred hcC-CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEecccc-CCcc----cCCCCCCCCcEEEecccCCCC-
Q 012718 205 LSR-KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHM----VVDVQGLDADFLVASSHKMCG- 273 (458)
Q Consensus 205 l~~-~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~~g- 273 (458)
+.. ++.+|+++.+....|...+ +++|.++|+++|+++|+|+++. +|.. ........+|+++ ++|.+|
T Consensus 184 l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~--~gK~l~g 261 (404)
T d2byla1 184 LQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVL--LGKALSG 261 (404)
T ss_dssp HTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGT
T ss_pred cCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEEE--ECchhhC
Confidence 865 6788999999998998887 8999999999999999999986 3222 1112233489886 789443
Q ss_pred C-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 012718 274 P-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMEL 352 (458)
Q Consensus 274 p-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l 352 (458)
+ ..+|.+++++++.+.+.+...+. +.+.++...++..++|+.+.+. .+.++..++
T Consensus 262 G~~p~~av~~~~~i~~~~~~~~~~~---------------------T~~gnpl~~aaa~a~L~~i~~~---~l~~~~~~~ 317 (404)
T d2byla1 262 GLYPVSAVLCDDDIMLTIKPGEHFS---------------------TYGGNPLGCRVAIAALEVLEEE---NLAENADKL 317 (404)
T ss_dssp TSSCCEEEEECHHHHTTSCTTSSCC---------------------SSTTCHHHHHHHHHHHHHHHHT---THHHHHHHH
T ss_pred CCccceeeeechhhhhccCCCCCCc---------------------CCCcCHHHHHHHHHHHHHHHhc---CchhhhhHh
Confidence 3 34899999998877776543211 2245677778888888888774 466677778
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC---CChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEE
Q 012718 353 AKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN---IHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARA 429 (458)
Q Consensus 353 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRi 429 (458)
.+++.+.|.++.. ++.... ...|.+..+.+.+ ....++.+.+.++ |+.+.+.. .+.+|+
T Consensus 318 g~~l~~~l~~l~~-~~i~~v----Rg~Gl~~~i~~~~~~~~~~~~~~~~l~~~-Gvl~~~~~------------~~~i~l 379 (404)
T d2byla1 318 GIILRNELMKLPS-DVVTAV----RGKGLLNAIVIKETKDWDAWKVCLRLRDN-GLLAKPTH------------GDIIRF 379 (404)
T ss_dssp HHHHHHHHHTSCT-TTEEEE----EEETTEEEEEECCCSSCCHHHHHHHHHHT-TEECEEEE------------TTEEEE
T ss_pred hHHHHHHHHhhcc-ccceee----eecccEEEEEEecCCchhHHHHHHHHHhC-CeEEecCC------------CCEEEE
Confidence 8888888877621 111111 2335577776643 3566788999988 99986532 468999
Q ss_pred eeCCCCCHHHHHHHHHHHHHHHHh
Q 012718 430 SLHFYNTKEDVDEFIHALNETVSF 453 (458)
Q Consensus 430 s~~~~~t~~di~~l~~~l~~~~~~ 453 (458)
++++..|++|||++++.|++++++
T Consensus 380 ~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 380 APPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ECCcCCCHHHHHHHHHHHHHHHHc
Confidence 999889999999999999999875
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=9.2e-19 Score=168.81 Aligned_cols=342 Identities=12% Similarity=0.075 Sum_probs=217.1
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|.-.+.+.+++.+.+.+..... ... -..+...++-+.+.+++..+..+.+.|++||+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~---~~~---~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs 111 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC---FQV---LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGS 111 (425)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCC---TTT---EECHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcc---ccc---ccCcHHHHHHHHHHhhhhhcccceeeeecccc
Confidence 445666643 345678899999998876543211 111 11233345667778888654334789999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcC----------CeEEEEeCC--CCCCCCH---HHHHHh
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG----------ANLKFLNLN--DDESPDL---DKLKEM 204 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g----------~~~~~v~~~--~~~~~d~---~~l~~~ 204 (458)
+|++.+++..+ ....+++|+....+||+.......+..... ......+.+ ....... ...++.
T Consensus 112 eA~e~Alk~ar--~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (425)
T d1sffa_ 112 EAVENAVKIAR--AATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRI 189 (425)
T ss_dssp HHHHHHHHHHH--HHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHH
T ss_pred chhhhHHHHhh--hhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHH
Confidence 99999998764 345667899999999987754443311000 111222211 1111100 011111
Q ss_pred ---h--cCCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccC-Cccc----CCCCCCCCcEEEecccC
Q 012718 205 ---L--SRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV-PHMV----VDVQGLDADFLVASSHK 270 (458)
Q Consensus 205 ---l--~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~-g~~~----~~~~~~~~d~~~~s~~K 270 (458)
. ..++.+|+++.++...|...+ ++.|.++|+++|+++|+|+++.. |... .......+|+++ ++|
T Consensus 190 ~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~--~gK 267 (425)
T d1sffa_ 190 FKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT--FAK 267 (425)
T ss_dssp HHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEE--ECG
T ss_pred HHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCcccee--ccc
Confidence 1 125689999999888888776 88999999999999999999983 3221 112234589988 778
Q ss_pred -CCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHH
Q 012718 271 -MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIG-MQKIHAY 348 (458)
Q Consensus 271 -~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~~~~~ 348 (458)
+.|+..+|.+++++++.+.+.+...+. +-+.++...++..++|+.+.+.. .+++.+.
T Consensus 268 ~l~gG~P~~av~~~~~i~~~~~~~~~~~---------------------T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~ 326 (425)
T d1sffa_ 268 SIAGGFPLAGVTGRAEVMDAVAPGGLGG---------------------TYAGNPIACVAALEVLKVFEQENLLQKANDL 326 (425)
T ss_dssp GGGTSSCCEEEEEEHHHHTTSCTTSBCC---------------------SSSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ccCCCcceEEEEEcHHHHHhhCCCCCCC---------------------CCCcCHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 433445899999999877766443221 12456677778888888887644 2333333
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeCC-----C-C---hHHHHHHHhhhcCeEeccCCCCChhhHh
Q 012718 349 EMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVEN-----I-H---PTDIATLLDQQYGVATRSGHHCAQPLHR 419 (458)
Q Consensus 349 ~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~-~---~~~~~~~l~~~~gi~~~~g~~~~~~~~~ 419 (458)
-..+.+.+.+.+++.+.+.-.. ..|.++.+.+.. . + ...+.+.+.++ |+.+.+...
T Consensus 327 g~~l~~~l~~~~~~~~~v~~vr-------g~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~g~------- 391 (425)
T d1sffa_ 327 GQKLKDGLLAIAEKHPEIGDVR-------GLGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGP------- 391 (425)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEE-------EETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEEST-------
T ss_pred hhhhhhhhhhhHhhCCceEEEE-------ccccEEEEEEeccCccCCccHHHHHHHHHHHHHC-CCEEeccCC-------
Confidence 3444444455555554432211 225577776631 1 1 24677788888 998865321
Q ss_pred hcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhhhc
Q 012718 420 YLGVNASARASLHFYNTKEDVDEFIHALNETVSFFNV 456 (458)
Q Consensus 420 ~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 456 (458)
..+.+|+++++.+|++|||+++++++++++++++
T Consensus 392 ---~~n~i~~~PpL~it~~eid~~l~~l~~al~eikk 425 (425)
T d1sffa_ 392 ---YYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 425 (425)
T ss_dssp ---TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred ---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 1568999999889999999999999999998874
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.82 E-value=4.5e-19 Score=166.31 Aligned_cols=339 Identities=14% Similarity=0.134 Sum_probs=219.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCC-cchhhhHHHHHHH-HHHHHHHHHcCCCCCCc--EEEeCChhHHHHHHHHHcC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRG-IHFLSAKATDEYE-LARKKVAAFINASDSGE--IVFTKNATEAINLVAYSWG 150 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~la~~~g~~~~~~--v~~t~g~t~a~~~~~~~l~ 150 (458)
+-..+++.+.+++...+..-+..-+.+ .++.|-...+.+| -++++..++||++..+. -|-..||+.|+..+..++
T Consensus 35 SEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~al- 113 (463)
T d2a7va1 35 SENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL- 113 (463)
T ss_dssp TCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-
T ss_pred cCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHH-
Confidence 445688888888877765432211112 2222333333444 46888999999996521 255679999999999999
Q ss_pred CCCCCCCCEEEEcCCCCccchH-HHHH---HHHHcC--CeEEEEeCC-CCCCCCHHHHHHhhcC-CceEEEEecccCcCc
Q 012718 151 LSNLKSGDEVILTVAEHHSAIV-PWQL---VAQKTG--ANLKFLNLN-DDESPDLDKLKEMLSR-KTKLVVIHHISNMLA 222 (458)
Q Consensus 151 ~~~~~~g~~vl~~~~~~~s~~~-~~~~---~a~~~g--~~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG 222 (458)
++|||+|+..+..+.+++. +... -....| .+...+.++ +++.+|.+++++...+ ++++|++..-.+ -
T Consensus 114 ---l~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S~y--~ 188 (463)
T d2a7va1 114 ---LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAY--A 188 (463)
T ss_dssp ---CCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSC--C
T ss_pred ---cCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEeccccc--c
Confidence 8999999988766654431 1100 001112 244555556 4588999999998766 889999866433 3
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCc-----ccCCCCCCCCcEEEecccC-CCCCCceeEEEEecccc---------
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPH-----MVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLL--------- 287 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~--------- 287 (458)
..+|++++.++|++.|+++++|.+|-.|. .+-.+. .+|++++|.|| +.||. .|+++.+++..
T Consensus 189 r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~--~aDvvt~tTHKTlrGPr-gGiIl~~~~~~~~~~~~~~~ 265 (463)
T d2a7va1 189 RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGRE 265 (463)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCS-CEEEEEECSEEEEETTTEEE
T ss_pred cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh--hhhhhhchhhhhhcCCC-ceEEEEcccccccccccCcc
Confidence 45789999999999999999999998443 332232 37999999999 66777 58888887431
Q ss_pred ------ccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Q 012718 288 ------SAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLL 361 (458)
Q Consensus 288 ------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~ 361 (458)
+++..... ....|.|....+++++.++....+...+.+.+++.++++.|.+.|.
T Consensus 266 ~~~~~~~~i~~avF--------------------Pg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~ 325 (463)
T d2a7va1 266 IPYTFEDRINFAVF--------------------PSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALL 325 (463)
T ss_dssp EECCCHHHHHHHHT--------------------TTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhhhhcC--------------------cccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 11110000 0114678888999999998887665688999999999999999999
Q ss_pred cCCCEEEeCCCCCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCC----CC
Q 012718 362 SIPNIRIYGPKPSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHF----YN 435 (458)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~----~~ 435 (458)
+. |+++....-. ..++.+.+. +.+..++.+.|.+. ||.+.-...+.-+ ..+ .++.|||+... ..
T Consensus 326 ~~-G~~vv~ggTd-----nHlvlvdl~~~~~~G~~ae~~Le~~-gI~~Nkn~iP~D~--~~~-~~sGiRiGT~a~TtrG~ 395 (463)
T d2a7va1 326 ER-GYSLVSGGTD-----NHLVLVDLRPKGLDGARAERVLELV-SITANKNTCPGDR--SAI-TPGGLRLGAPALTSRQF 395 (463)
T ss_dssp HT-TCEEGGGSCS-----SSEEEEECTTTTCCHHHHHHHHHHT-TEECEEECCTTCC--CSS-SCSEEEEESHHHHHTTC
T ss_pred hC-CCeeecCCCC-----CceeeeeccccCCCHHHHHHHHHhc-cCccCCccCCCCC--CCC-CCCceEeCCHHHHhCCC
Confidence 88 9999754321 346677774 46778888888888 9988532211110 011 26789998653 34
Q ss_pred CHHHHHHHHHHHHHHHH
Q 012718 436 TKEDVDEFIHALNETVS 452 (458)
Q Consensus 436 t~~di~~l~~~l~~~~~ 452 (458)
.++|+.++.+.|.++++
T Consensus 396 ~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 396 REDDFRRVVDFIDEGVN 412 (463)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 77999999999988875
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.82 E-value=4.6e-19 Score=166.85 Aligned_cols=350 Identities=14% Similarity=0.116 Sum_probs=234.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhccCCCCC-cchhhhHHHHHHH-HHHHHHHHHcCCCCCC-cE-EEeCChhHHHHHHHHHcC
Q 012718 75 ATSQKPIAVLKALQNYYEAYNSNVHRG-IHFLSAKATDEYE-LARKKVAAFINASDSG-EI-VFTKNATEAINLVAYSWG 150 (458)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~la~~~g~~~~~-~v-~~t~g~t~a~~~~~~~l~ 150 (458)
+-..+++.+++++...+...+..-+.| .++.|-...+.+| .+.++..++||+++.. .+ |-..||+.|+..+..++
T Consensus 39 SEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~al- 117 (470)
T d1rv3a_ 39 SENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTAL- 117 (470)
T ss_dssp TCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-
T ss_pred CCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHh-
Confidence 444688888888887775432211112 2223333444444 4778889999997542 22 45679999999999998
Q ss_pred CCCCCCCCEEEEcCCCCccchHHH------HHHHHHcCCeEEEEeCCCC-CCCCHHHHHHhhcC-CceEEEEecccCcCc
Q 012718 151 LSNLKSGDEVILTVAEHHSAIVPW------QLVAQKTGANLKFLNLNDD-ESPDLDKLKEMLSR-KTKLVVIHHISNMLA 222 (458)
Q Consensus 151 ~~~~~~g~~vl~~~~~~~s~~~~~------~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG 222 (458)
++|||+|+..+..+.++..-- ..-+.....+...++++++ +.+|.+++++.... ++++|++..-.+ -
T Consensus 118 ---l~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y--~ 192 (470)
T d1rv3a_ 118 ---VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY--S 192 (470)
T ss_dssp ---TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSC--C
T ss_pred ---cCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhhc--c
Confidence 899999998776554332100 0001112467888888865 89999999998765 889999865433 3
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCc-----ccCCCCCCCCcEEEecccC-CCCCCceeEEEEeccccccCCCcccc
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPH-----MVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSAMPPFLGG 296 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g 296 (458)
..+|++++.++|++.|+++++|.+|-.|. .+-.+. .+|++++|.|| +.||.| |+++.+++.... .+-...
T Consensus 193 r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~--~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~-~~~~~~ 268 (470)
T d1rv3a_ 193 RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--HCHVVTTTTHKTLRGCRA-GMIFYRRGVRSV-DPKTGK 268 (470)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--TCSEEEEESSGGGCCCSC-EEEEEECSBCC--------
T ss_pred ccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhh--eeeeeeeehhhhccCCcc-eEEEEccccccc-cccccc
Confidence 56789999999999999999999998543 332232 36999999999 567875 888888753110 000000
Q ss_pred CcceEeeecCCCCCCC-C-CCc--cCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Q 012718 297 GEMISDVFLDHSTFAD-P-PSR--FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPK 372 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~-~~~--~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 372 (458)
.. . ..+.. . ... ...|.|....+++++.++.......+..+.+++.++++.|.+.|.+. |+++....
T Consensus 269 ~~--~------~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~gg 339 (470)
T d1rv3a_ 269 EI--L------YNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGG 339 (470)
T ss_dssp CC--B------CCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS
T ss_pred hh--H------HHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC-CceeccCC
Confidence 00 0 00000 0 000 11477888899999989888765457899999999999999999988 99987543
Q ss_pred CCCcCccccEEEEEeC--CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeC----CCCCHHHHHHHHHH
Q 012718 373 PSEHVQRAALCSFNVE--NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLH----FYNTKEDVDEFIHA 446 (458)
Q Consensus 373 ~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~----~~~t~~di~~l~~~ 446 (458)
-. ..++.+.+. +.+..++.+.|.+. ||.+.-...+..+ .. ..++.+||+.. ....++|+.++.+.
T Consensus 340 Td-----nHlvlvdl~~~g~~g~~ae~~Le~~-gI~~Nkn~iP~D~--~~-~~~sGiRiGT~alTtrG~~e~dm~~iA~~ 410 (470)
T d1rv3a_ 340 SD-----NHLILVDLRSKGTDGGRAEKVLEAC-SIACNKNTCPGDK--SA-LRPSGLRLGTPALTSRGLLEKDFQKVAHF 410 (470)
T ss_dssp CS-----SSEEEEEGGGGTCCHHHHHHHHHHT-TEECEEECCSSCS--CT-TSCCEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred CC-----CceEEEeecccCCcHHHHHHHHHHc-CcEECCCcCCCCC--CC-CCCCeeEecCHHHHhCCCCHHHHHHHHHH
Confidence 21 346667664 56788888888877 9987532211111 01 12678999865 33588999999999
Q ss_pred HHHHHH
Q 012718 447 LNETVS 452 (458)
Q Consensus 447 l~~~~~ 452 (458)
|.++++
T Consensus 411 I~~~l~ 416 (470)
T d1rv3a_ 411 IHRGIE 416 (470)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999885
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.80 E-value=1.4e-18 Score=168.45 Aligned_cols=306 Identities=16% Similarity=0.161 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEe
Q 012718 110 TDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLN 189 (458)
Q Consensus 110 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~ 189 (458)
.+.+.++++.+|+++|.+ .++++++||.|+.+++.++ +++||.|+.... +.+. .......|+..+.+.
T Consensus 74 dpt~~~lE~~~a~l~G~e---~al~~~SGt~An~~a~~~l----~~~Gd~Vi~~~~-f~~~----~~~i~~~g~~~~~~~ 141 (456)
T d1c7ga_ 74 SENFYHLEKTVKELFGFK---HIVPTHQGRGAENLLSQLA----IKPGQYVAGNMY-FTTT----RFHQEKNGATFVDIV 141 (456)
T ss_dssp CHHHHHHHHHHHHHHCCS---EEEEESSHHHHHHHHHHHH----CCTTEEEEESSC-CHHH----HHHHHHTTEEEEECB
T ss_pred CchHHHHHHHHHHHhCCC---eEEECCCHHHHHHHHHHHh----cCCCCeEecCcc-hHHH----HHHHHHcCceeeecc
Confidence 344567889999999998 7899999999999999998 789998887654 3322 222344577776654
Q ss_pred CC----------CCCCCCHHHHHHhhcC----CceEEEEecccCcCc-cccc---HHHHHHHHHhcCcEEEEeccccCCc
Q 012718 190 LN----------DDESPDLDKLKEMLSR----KTKLVVIHHISNMLA-SILP---IEEIVHWSHDVGAKVLVDACQSVPH 251 (458)
Q Consensus 190 ~~----------~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG-~~~~---l~~i~~l~~~~~~~vivD~a~~~g~ 251 (458)
.+ ..+.+|++.|++.|++ .+.+++++.++|+.| ...| +++|.++|++||+.+|+|+++..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~ 221 (456)
T d1c7ga_ 142 RDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVEN 221 (456)
T ss_dssp CGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHH
T ss_pred ccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcc
Confidence 32 2467899999999975 346889999999875 4445 7788999999999999999987543
Q ss_pred c------cCCCCC-----------CCCcEEEecccCCCCCCceeEEEEecc-ccccCCCcc--ccCcceEeeecCCCCCC
Q 012718 252 M------VVDVQG-----------LDADFLVASSHKMCGPTGIGFLFGKSD-LLSAMPPFL--GGGEMISDVFLDHSTFA 311 (458)
Q Consensus 252 ~------~~~~~~-----------~~~d~~~~s~~K~~gp~g~G~l~~~~~-~~~~l~~~~--~g~~~~~~~~~~~~~~~ 311 (458)
. ...... ...|++++|.+|.++..+.|+++.+++ +.++++... .++.
T Consensus 222 a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~~l~~~~r~~~~~~~g~------------- 288 (456)
T d1c7ga_ 222 AYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGM------------- 288 (456)
T ss_dssp HHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCC-------------
T ss_pred hhhhcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCHHHHHHHHHhccccCCC-------------
Confidence 1 111111 127999999999776554588887764 333333211 1110
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEe----
Q 012718 312 DPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNV---- 387 (458)
Q Consensus 312 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 387 (458)
...|..+...+.++...+... .+.+ ..++..+..++|.+.|.+. ++.+..+.. +..+.+..
T Consensus 289 -----~~~g~~~~~~~~a~a~~l~e~--~~~~-~l~~r~~~~~~L~e~L~~~-g~~vv~p~g------~~~v~vda~~~~ 353 (456)
T d1c7ga_ 289 -----PSYGGLAGRDMEAMAIGLREA--MQYE-YIEHRVKQVRYLGDKLREA-GVPIVEPTG------GHAVFLDARRFC 353 (456)
T ss_dssp -----TTTTTCCHHHHHHHHHHHHHH--TCHH-HHHHHHHHHHHHHHHHHHT-TCCBCSSCC------SSEEEEEHHHHC
T ss_pred -----cccchhhHHHHHHHHHHHHHh--cCHH-HHHHHHHHHHHHHHHHHhc-cCCcccCCC------CcceeEechhhc
Confidence 112344444444444444433 2233 3444566778999999887 776665542 22333321
Q ss_pred CCC-----ChHHHHHHHhhhcCeEeccCCCCChhhHh-----hcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhhh
Q 012718 388 ENI-----HPTDIATLLDQQYGVATRSGHHCAQPLHR-----YLGVNASARASLH-FYNTKEDVDEFIHALNETVSFFN 455 (458)
Q Consensus 388 ~~~-----~~~~~~~~l~~~~gi~~~~g~~~~~~~~~-----~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~ 455 (458)
+.. ....+...+....||...+...+...... .+...+.+|++++ ...|.+|||.+++.|+++.++..
T Consensus 354 ~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~ 432 (456)
T d1c7ga_ 354 PHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGG
T ss_pred cCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhh
Confidence 211 22334444433338865432211110000 1122457999987 33499999999999999987543
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.77 E-value=2.8e-17 Score=158.24 Aligned_cols=325 Identities=16% Similarity=0.128 Sum_probs=200.9
Q ss_pred CCeEEecCCC------CCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNAA------TSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|..+ .|.-.+.+.+++.+.+.+..... .. ......+.+.+.+..+.. +.+.|+++|+
T Consensus 50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~--~~-------~~~~~~la~~~~~~~~~~--~~v~f~~sGs 118 (427)
T d2gsaa_ 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFG--AP-------CALENVLAEMVNDAVPSI--EMVRFVNSGT 118 (427)
T ss_dssp TSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCS--SC-------CHHHHHHHHHHHHHSTTC--SEEEEESSHH
T ss_pred CCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCccc--cc-------hhHHHHHHHHHHhhCCcc--ccccccCCcH
Confidence 4455666432 34567899999988876532211 11 112234556666666533 3889999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHH----HHHcCC------------eEEEEeCCCCCCCCHHHHHH
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLV----AQKTGA------------NLKFLNLNDDESPDLDKLKE 203 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~----a~~~g~------------~~~~v~~~~~~~~d~~~l~~ 203 (458)
+|++.++...+ ....+++|+....+||+.......+ ....+. +...++. -|++.+++
T Consensus 119 eA~e~Alk~ar--~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~le~ 191 (427)
T d2gsaa_ 119 EACMAVLRLMR--AYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-----NDLEAVKA 191 (427)
T ss_dssp HHHHHHHHHHH--HHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-----TCHHHHHH
T ss_pred HHHHHHHHHHH--HhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc-----chHHHHHH
Confidence 99999998763 2356678999999999754321110 001111 2223332 28899999
Q ss_pred hhcC---CceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccCCccc----CCCCCCCCcEEEecccC-C
Q 012718 204 MLSR---KTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSVPHMV----VDVQGLDADFLVASSHK-M 271 (458)
Q Consensus 204 ~l~~---~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~g~~~----~~~~~~~~d~~~~s~~K-~ 271 (458)
.+++ ++.+|+++......|.+.| ++.|.++|++||+++|+|+++...... .+.....+|+++ +.| +
T Consensus 192 ~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~--~gK~l 269 (427)
T d2gsaa_ 192 LFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTT--LGKII 269 (427)
T ss_dssp HHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEE--ECGGG
T ss_pred HHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHh--hhhcc
Confidence 9875 5689999999988999888 999999999999999999999632110 011233589999 556 3
Q ss_pred CCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 012718 272 CGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEME 351 (458)
Q Consensus 272 ~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~ 351 (458)
.|...+|.+++++++.+.+.+... . ....+.+.++...++..++|+.+.+.+ +.+++++
T Consensus 270 ggG~p~~a~~~~~~i~~~~~~~~~--~----------------~~~~T~~gnpla~AAala~Le~i~~~~---l~~~~~~ 328 (427)
T d2gsaa_ 270 GGGLPVGAYGGKREIMQLVAPAGP--M----------------YQAGTLSGNPLAMTAGIKTLELLRQPG---TYEYLDQ 328 (427)
T ss_dssp GTTSCCEEEEECHHHHTTBTTTSS--B----------------CCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHH
T ss_pred CCCcceeeeeehHHHHHHhcccCC--C----------------cCCCCCCCCchhhHHHHHhhHHhhhhh---HHhhhhH
Confidence 333336778889888776653211 0 001123467777777777888777643 3444555
Q ss_pred HHHHHHHHH----hcCCC-EEEeCCCCCCcCccccEEEEEeCC--C---------Ch---HHHHHHHhhhcCeEeccCCC
Q 012718 352 LAKYLYENL----LSIPN-IRIYGPKPSEHVQRAALCSFNVEN--I---------HP---TDIATLLDQQYGVATRSGHH 412 (458)
Q Consensus 352 l~~~l~~~L----~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~--~---------~~---~~~~~~l~~~~gi~~~~g~~ 412 (458)
+.++|.+.| ++.+. ..+... ++++.+.+.. + +. ..+...+.++ ||.+.++.+
T Consensus 329 ~g~~l~~~L~~l~~~~~~~~~v~~~--------ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~-Gv~l~p~~~ 399 (427)
T d2gsaa_ 329 ITKRLSDGLLAIAQETGHAACGGQV--------SGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF 399 (427)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEE--------TTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT
T ss_pred HHHHHHHHHHHHHhhcCCCcEEccc--------CCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHC-CEEECCCCC
Confidence 555555544 33321 112111 3344443311 0 11 3466677788 999876541
Q ss_pred CChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 413 CAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 413 ~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
..+ -++..+|++|||+++++++++++++
T Consensus 400 ------------~~~--~~~l~~Te~dId~~l~al~~al~~L 427 (427)
T d2gsaa_ 400 ------------EAG--FTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp ------------SCE--ECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred ------------cce--eCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 122 2345589999999999999998764
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=7e-16 Score=148.07 Aligned_cols=365 Identities=16% Similarity=0.082 Sum_probs=242.9
Q ss_pred CeEEecCCCCCCCcHHHHHHHHHHHHHhccCCCCCc-chhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHH
Q 012718 67 KLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGI-HFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLV 145 (458)
Q Consensus 67 ~~i~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~ 145 (458)
..+.+..+ ....++.+.+.+.+++. ..+... -..+.+.-+.+-+.+..+++++|.+-. +.-.-.|+|.+-+.+
T Consensus 66 ~~~~lG~~-~~hy~P~v~~~~~~~~T----aYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdva-NaS~yDGatA~aeA~ 139 (471)
T d1wyub1 66 TFYPLGSC-TMKYNPKLHEEAARLFA----DLHPYQDPRTAQGALRLMWELGEYLKALTGMDAI-TLEPAAGAHGELTGI 139 (471)
T ss_dssp SCCCBTTT-CCCCCCHHHHHHHHTTS----SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHH
T ss_pred cccCCccc-cCccCcchhhhHHHHHh----ccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-ccccchHHHHHHHHH
Confidence 34444333 33455667776665432 211222 244566778888999999999999732 233445666555555
Q ss_pred HHHcCC---CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCCHHHHHHhhcCCceEEEEecccCcCc
Q 012718 146 AYSWGL---SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLA 222 (458)
Q Consensus 146 ~~~l~~---~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n~tG 222 (458)
+.+.+. ........+.+..+.++... .......+..++.++.+..+..|.+.++.....++..+++..+++..+
T Consensus 140 ~ma~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~ 216 (471)
T d1wyub1 140 LIIRAYHEDRGEGRTRRVVLVPDSAHGSN---PATASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGL 216 (471)
T ss_dssp HHHHHHHHHTTCTTTCCEEEEETTSCTHH---HHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSC
T ss_pred HHHHHHhhhcccccccccccCCcccccce---eeeeecccceeecccccccccccchhhhhhhhccccceeeccCCCccc
Confidence 544321 11122234555555555443 333455688888998888888899999999988999999999966655
Q ss_pred ccccHHHHHHHHHhcCcEEEEeccccCCcc-cCCCCCCCCcEEEecccCCC------CCCceeEEEEeccccccCCCccc
Q 012718 223 SILPIEEIVHWSHDVGAKVLVDACQSVPHM-VVDVQGLDADFLVASSHKMC------GPTGIGFLFGKSDLLSAMPPFLG 295 (458)
Q Consensus 223 ~~~~l~~i~~l~~~~~~~vivD~a~~~g~~-~~~~~~~~~d~~~~s~~K~~------gp~g~G~l~~~~~~~~~l~~~~~ 295 (458)
.....+.+.+++|+.+..+++|.+...... .......+.|+++.+.++.| |++++|++.+++++.+.++-.+.
T Consensus 217 ~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV 296 (471)
T d1wyub1 217 FERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLV 296 (471)
T ss_dssp CCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEE
T ss_pred ccchhhhhHHHHHhccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCCcee
Confidence 555689999999999999999887553332 12233456888888888844 34559999999999988884433
Q ss_pred cCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Q 012718 296 GGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSE 375 (458)
Q Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~ 375 (458)
+.+... +.....-....+|-..+|.+.....+....+.++...|+.++.+++.+++.|+.+.|+. +|+++..+.+.
T Consensus 297 ~~~~~~--~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~~f- 372 (471)
T d1wyub1 297 ERGEEG--FYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPYDGPS- 372 (471)
T ss_dssp EECSSC--EEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCSSC-
T ss_pred cCCCcc--ccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceeccCcce-
Confidence 222111 11001112223444567777766667777888999999999999999999999999976 58887554321
Q ss_pred cCccccEEEEEeC-CCChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 376 HVQRAALCSFNVE-NIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 376 ~~~~~~~v~~~~~-~~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
-.-+.++.+ +++..++.+.|.+. |+.-....+. ...++.+-|++.--+|.+|||+++++|+++++++
T Consensus 373 ----f~EFvv~~~~~~~~~~i~k~L~~~-G~~~~~~~~p-------~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 373 ----MHEFVAQPPEGFRALDLAKGLLEL-GFHPPTVYFP-------LIVKEALMVEPTETEAKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp ----CSCEEEBCSTTCCHHHHHHHHHHT-TCCCCEESCS-------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred ----eeEEeecCCCCCCHHHHHHHHHHc-CCCCCcccCc-------CCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 222344554 46778899999988 9864211111 1125678899998899999999999999999876
Q ss_pred hc
Q 012718 455 NV 456 (458)
Q Consensus 455 ~~ 456 (458)
++
T Consensus 441 ~~ 442 (471)
T d1wyub1 441 KE 442 (471)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=6.9e-17 Score=155.17 Aligned_cols=340 Identities=11% Similarity=0.043 Sum_probs=215.6
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|.-.+.+.+++.+.+.......... . ..+...++.+.+.+......+ .+.|+++++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~--~----~~~~~~~l~~~l~~~~~~~~~-~v~f~~sGs 113 (429)
T d1s0aa_ 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG--I----THAPAIELCRKLVAMTPQPLE-CVFLADSGS 113 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSS--E----ECHHHHHHHHHHHHHSCTTCC-EEEEESSHH
T ss_pred CCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCC--c----cchHHHHHHHHHHhhhccCcc-eeeeccccc
Confidence 344566632 234568999999999887643211111 1 112233455666777765543 899999999
Q ss_pred HHHHHHHHHcCCCC---CCCCCEEEEcCCCCccchHHHHHHHHHc----------CCeEEEEeCCCC---CC---CCHHH
Q 012718 140 EAINLVAYSWGLSN---LKSGDEVILTVAEHHSAIVPWQLVAQKT----------GANLKFLNLNDD---ES---PDLDK 200 (458)
Q Consensus 140 ~a~~~~~~~l~~~~---~~~g~~vl~~~~~~~s~~~~~~~~a~~~----------g~~~~~v~~~~~---~~---~d~~~ 200 (458)
+|++.++...+... -.++.+|+....+||+.......+.... .......|.... .. .+++.
T Consensus 114 eA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (429)
T d1s0aa_ 114 VAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG 193 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHH
T ss_pred cchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhh
Confidence 99999987653110 1334589999999997764433221100 011222332211 11 24444
Q ss_pred HHHhhc---CCceEEEEeccc-CcCccccc----HHHHHHHHHhcCcEEEEecccc-CCccc----CCCCCCCCcEEEec
Q 012718 201 LKEMLS---RKTKLVVIHHIS-NMLASILP----IEEIVHWSHDVGAKVLVDACQS-VPHMV----VDVQGLDADFLVAS 267 (458)
Q Consensus 201 l~~~l~---~~~~~v~~~~~~-n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~-~g~~~----~~~~~~~~d~~~~s 267 (458)
+++.+. +++.+|+++.+. +..|...+ ++.|.++|+++|+++|+|+++. +|... .......+|+++
T Consensus 194 ~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~-- 271 (429)
T d1s0aa_ 194 FARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILC-- 271 (429)
T ss_dssp HHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--
T ss_pred hhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccc--
Confidence 444433 467888888765 55556543 8999999999999999999988 32221 112234589999
Q ss_pred ccCCC-CC-CceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHH
Q 012718 268 SHKMC-GP-TGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKI 345 (458)
Q Consensus 268 ~~K~~-gp-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~ 345 (458)
+.|.+ |+ ..+|.+++++++.+.+.+...+... ...+-+.+....++..+.|+.+.+ +.+
T Consensus 272 ~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~----------------~~~T~~gnp~~~aaa~a~L~~i~~---~~~ 332 (429)
T d1s0aa_ 272 LGKALTGGTMTLSATLTTREVAETISNGEAGCFM----------------HGPTFMGNPLACAAANASLAILES---GDW 332 (429)
T ss_dssp ECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCS----------------CCCTTTTCHHHHHHHHHHHHHHHT---CHH
T ss_pred cccccccccccccchhhHHHHHhccCCCCCccee----------------ecCCCCCCcccchhhhcccccccc---ccc
Confidence 66843 33 4489999999876544321110000 011224666677777778887766 467
Q ss_pred HHHHHHHHHHHHHHHhcC---CCEEEeCCCCCCcCccccEEEEEeCC-CChHHHHHHHhhhcCeEeccCCCCChhhHhhc
Q 012718 346 HAYEMELAKYLYENLLSI---PNIRIYGPKPSEHVQRAALCSFNVEN-IHPTDIATLLDQQYGVATRSGHHCAQPLHRYL 421 (458)
Q Consensus 346 ~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~ 421 (458)
.++.+++.++|.+.|+++ +.+. .. ...|.+..+.+.. .+...+.+.+.++ |+.+.+.
T Consensus 333 ~~~~~~~g~~l~~~L~~l~~~~~v~---~v----rg~Gl~~~~e~~~~~~~~~~~~~~~~~-Gl~~~~~----------- 393 (429)
T d1s0aa_ 333 QQQVADIEVQLREQLAPARDAEMVA---DV----RVLGAIGVVETTHPVNMAALQKFFVEQ-GVWIRPF----------- 393 (429)
T ss_dssp HHHHHHHHHHHHHHHGGGGGCTTEE---EE----EEETTEEEEEESSCBCHHHHHHHHHHT-TEECCCB-----------
T ss_pred cchhhHHHHHHHHHHHHhccCCceE---EE----eecccEEEEEecCcccHHHHHHHHHHC-CcEEEec-----------
Confidence 788888888888888655 2322 11 2336677888753 4567888899888 9998653
Q ss_pred CCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 422 GVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 422 g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
.+.+|+++++-.|++|||+++++|++++++.
T Consensus 394 --g~~i~~~Ppl~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 394 --GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred --CCEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 3589999998899999999999999998764
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.75 E-value=1.1e-17 Score=163.91 Aligned_cols=312 Identities=16% Similarity=0.077 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCC---CCCCCCCEEEEcCCCCccchHHHHHHHHHcCCeEEE
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGL---SNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF 187 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~---~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g~~~~~ 187 (458)
....++++.+++++|.+ .+++++|||+|+..++.++.. .....+..++.... |+.. ........|..++.
T Consensus 75 ~~~~~le~~~a~l~g~~---~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~-h~~t---~~~~~~~~g~~~~~ 147 (465)
T d1ax4a_ 75 RNYYDLKDKAKELFNYD---YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNF-HFDT---TAAHVELNGCKAIN 147 (465)
T ss_dssp HHHHHHHHHHHHHHCCC---EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESS-CCHH---HHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHHHHHCCC---EEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccc-hhhh---hHHHHHHcCCeeec
Confidence 44557889999999986 899999999999999988731 01122233444433 3322 23334456877766
Q ss_pred EeCC----------CCCCCCHHHHHHhhcC----CceEEEEecccCcCccc-cc---HHHHHHHHHhcCcEEEEeccccC
Q 012718 188 LNLN----------DDESPDLDKLKEMLSR----KTKLVVIHHISNMLASI-LP---IEEIVHWSHDVGAKVLVDACQSV 249 (458)
Q Consensus 188 v~~~----------~~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG~~-~~---l~~i~~l~~~~~~~vivD~a~~~ 249 (458)
+... ..+.+|+++++++|++ .+.+++++..+|..|.. .| +++|.++|++||+++|+|+++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~ 227 (465)
T d1ax4a_ 148 IVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFC 227 (465)
T ss_dssp CBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred ccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchh
Confidence 5431 3478899999999864 34677777777766543 44 77899999999999999999874
Q ss_pred Cccc------CCCCC-----------CCCcEEEecccCCCCCCceeEEEEecccc--ccCCCccccCcceEeeecCCCCC
Q 012718 250 PHMV------VDVQG-----------LDADFLVASSHKMCGPTGIGFLFGKSDLL--SAMPPFLGGGEMISDVFLDHSTF 310 (458)
Q Consensus 250 g~~~------~~~~~-----------~~~d~~~~s~~K~~gp~g~G~l~~~~~~~--~~l~~~~~g~~~~~~~~~~~~~~ 310 (458)
+... ..... ...|++++|.+|.+++.+.|+++.+++.. +........+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~------------ 295 (465)
T d1ax4a_ 228 ENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPME------------ 295 (465)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHT------------
T ss_pred hhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhccccccc------------
Confidence 3221 00000 01689999999977776679998886531 11110000000
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC--
Q 012718 311 ADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE-- 388 (458)
Q Consensus 311 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 388 (458)
.....+........++ ...+.+...+...++..+..++|.+.|++. ++.+..+.. +..+.+...
T Consensus 296 ----~~~~~~~~~~~~~~a~---~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~------~~~~~~~~~~~ 361 (465)
T d1ax4a_ 296 ----GFVTYGGLAGRDMAAM---VQGLEEGTEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTG------GHAVFVDCKKL 361 (465)
T ss_dssp ----CSTTTTTCCHHHHHHH---HHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCC------SSEEEEESTTT
T ss_pred ----cCCCcchhhHHHHHHH---hhhhHHhhhHHHHHHHHHHHHHHHHHHHhh-cCccccCCC------cceeeeehhhh
Confidence 0000112222222222 222222222445566667789999999887 666655442 233333322
Q ss_pred --CCC-----hHH-HHHHHhhhcCeEeccCCCCChhhHh-----hcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHHhh
Q 012718 389 --NIH-----PTD-IATLLDQQYGVATRSGHHCAQPLHR-----YLGVNASARASLH-FYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 389 --~~~-----~~~-~~~~l~~~~gi~~~~g~~~~~~~~~-----~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~ 454 (458)
... ... ..+.+.+. ||.............. .....+.+|++++ ...|.+|||++++.|++++++.
T Consensus 362 ~~~~~~~~~~~~~~~~~ll~~~-GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~ 440 (465)
T d1ax4a_ 362 VPQIPGDQFPAQAVINALYLES-GVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 440 (465)
T ss_dssp CTTSCGGGCHHHHHHHHHHHHH-CEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred cCCCccccchhHHHHHHHHHhc-CceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 111 223 33444555 9876432211100000 0112568999865 3459999999999999998765
Q ss_pred hc
Q 012718 455 NV 456 (458)
Q Consensus 455 ~~ 456 (458)
.+
T Consensus 441 ~~ 442 (465)
T d1ax4a_ 441 AT 442 (465)
T ss_dssp TT
T ss_pred Hh
Confidence 43
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.7e-18 Score=169.73 Aligned_cols=313 Identities=15% Similarity=0.098 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEeCChhHHHHHHHHHcCCCCCCCCC---------EEEEcCCCCccchHHHHHHHHHc
Q 012718 111 DEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGD---------EVILTVAEHHSAIVPWQLVAQKT 181 (458)
Q Consensus 111 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~a~~~~~~~l~~~~~~~g~---------~vl~~~~~~~s~~~~~~~~a~~~ 181 (458)
+...++++.+++++|.+ .+++++|||+|+..++.++ .++|+ .+......|... .......
T Consensus 74 ~~~~~le~~~a~l~G~~---~~~~~~sGt~A~~~a~~~~----~~~g~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~ 142 (467)
T d2v1pa1 74 RSYYALAESVKNIFGYQ---YTIPTHQGRGAEQIYIPVL----IKKREQEKGLDRSKMVAFSNYFFDTT----QGHSQIN 142 (467)
T ss_dssp HHHHHHHHHHHHHTCCS---EEEEECSSTTTHHHHHHHH----HHHHHHHHCCCTTTCEEEESSCCHHH----HHHHHHT
T ss_pred chHHHHHHHHHHHHCCC---EEEECCCCHHHHHHHHHHH----hhccceEecCCCCcEEEEeccccccc----HHHHHHc
Confidence 34557889999999987 7899999999999999887 33333 343333333322 3344556
Q ss_pred CCeEEEEeCCC----------CCCCCHHHHHHhhcC----CceEEEEecccCcCcc-ccc---HHHHHHHHHhcCcEEEE
Q 012718 182 GANLKFLNLND----------DESPDLDKLKEMLSR----KTKLVVIHHISNMLAS-ILP---IEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 182 g~~~~~v~~~~----------~~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG~-~~~---l~~i~~l~~~~~~~viv 243 (458)
|+.++.++.+. .+.+|++++++.+.+ .+++++++..+|..|. +.| +++|.++|++||+++|+
T Consensus 143 G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~ 222 (467)
T d2v1pa1 143 GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVM 222 (467)
T ss_dssp TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEE
Confidence 99998887653 256899999998864 4678888888877654 444 78899999999999999
Q ss_pred eccccCCccc------CCCCC-----------CCCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecC
Q 012718 244 DACQSVPHMV------VDVQG-----------LDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLD 306 (458)
Q Consensus 244 D~a~~~g~~~------~~~~~-----------~~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 306 (458)
|+++.++... ..... ...|++++|.+|.++....|++..+++.+..........+..
T Consensus 223 D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~------ 296 (467)
T d2v1pa1 223 DSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVV------ 296 (467)
T ss_dssp ECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHH------
T ss_pred echhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccc------
Confidence 9998754321 00111 127999999999665555688888776443221110000000
Q ss_pred CCCCCCCCCcc-CCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEE
Q 012718 307 HSTFADPPSRF-EAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSF 385 (458)
Q Consensus 307 ~~~~~~~~~~~-~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (458)
...+ ..+......+.++... +.........++..++.++|.+.|.+. +..+..... ...++..
T Consensus 297 -------~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~-----~~~~~~~ 360 (467)
T d2v1pa1 297 -------QEGFPTYGGLEGGAMERLAVG---LYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQQAGG-----HAAFVDA 360 (467)
T ss_dssp -------TTSSCCCCCCCHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEEEECS-----SCEEEEH
T ss_pred -------cccCcchhhhHHHHHHHHHHH---hHHhhhHHHHHHHHHHHHHHHHHHHhc-CCcccCCCc-----cceeecc
Confidence 0001 1122222222222222 222223456666778899999999887 444432221 1111111
Q ss_pred E--eCCC-----ChHHHHHHHhhhcCeEeccCCCCChhhHh-----hcCCCCeEEEeeC-CCCCHHHHHHHHHHHHHHHH
Q 012718 386 N--VENI-----HPTDIATLLDQQYGVATRSGHHCAQPLHR-----YLGVNASARASLH-FYNTKEDVDEFIHALNETVS 452 (458)
Q Consensus 386 ~--~~~~-----~~~~~~~~l~~~~gi~~~~g~~~~~~~~~-----~~g~~~~lRis~~-~~~t~~di~~l~~~l~~~~~ 452 (458)
. ++.. ........+..++||.......+...... .......+|++++ ...|.+|||+++++|+++++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~ 440 (467)
T d2v1pa1 361 GKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp HHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 1 1221 12333333433338865322111000000 1122578999976 34599999999999999997
Q ss_pred hhhc
Q 012718 453 FFNV 456 (458)
Q Consensus 453 ~~~~ 456 (458)
+..+
T Consensus 441 ~~~~ 444 (467)
T d2v1pa1 441 NAAN 444 (467)
T ss_dssp TGGG
T ss_pred HHHh
Confidence 6544
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.71 E-value=2.6e-15 Score=144.75 Aligned_cols=342 Identities=10% Similarity=0.030 Sum_probs=205.7
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++--|+|.. ..|.-.+.+.+++.+.+++... .... .. .+...++-+.|.+...-.- +.+.|++|||
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~--~~----~~~~~~la~~L~~~~~~~~-~~v~f~~sGs 110 (431)
T d1zoda1 39 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSE--ML----SRPVVDLATRLANITPPGL-DRALLLSTGA 110 (431)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCTT--CC----CHHHHHHHHHHHHHSCTTC-CEEEEESCHH
T ss_pred CCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccc-cccc--cc----cHHHHHHHHHHHHhCCccc-ceeeeccccc
Confidence 344566643 2556779999999999887432 1111 11 1222345566777764332 3899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCEEEEcCCCCccchHHHHHHHHHcC--------CeEEEEeCCCCC---------CCCH---H
Q 012718 140 EAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTG--------ANLKFLNLNDDE---------SPDL---D 199 (458)
Q Consensus 140 ~a~~~~~~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~a~~~g--------~~~~~v~~~~~~---------~~d~---~ 199 (458)
+|++.+++..+ ....+++|+.....||+............+ .....++..... ..+. +
T Consensus 111 eA~e~Alk~Ar--~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (431)
T d1zoda1 111 ESNEAAIRMAK--LVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 188 (431)
T ss_dssp HHHHHHHHHHH--HHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred chHHHHHHHHH--HhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHH
Confidence 99999998764 245678999999999987654432211000 112333322110 0122 2
Q ss_pred HHHHhh----cCCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEEeccccC-CcccC--C--CCCCCCcEEEe
Q 012718 200 KLKEML----SRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLVDACQSV-PHMVV--D--VQGLDADFLVA 266 (458)
Q Consensus 200 ~l~~~l----~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~vivD~a~~~-g~~~~--~--~~~~~~d~~~~ 266 (458)
.+...+ ..++.+|+++.++...|.+.+ +++|.++|+++|+++|.|+++.. |.... . .....+|+++
T Consensus 189 ~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~- 267 (431)
T d1zoda1 189 YAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILT- 267 (431)
T ss_dssp HHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE-
T ss_pred HHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhc-
Confidence 222222 246799999999888888876 89999999999999999999983 43311 1 1123589999
Q ss_pred cccC-CCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCccCCCCCCHHHHHHHHHHHHHHHHhCH-HH
Q 012718 267 SSHK-MCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPAIGEAIGLGAAIDYLSTIGM-QK 344 (458)
Q Consensus 267 s~~K-~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~-~~ 344 (458)
+.| +.|+...+.++++++..+....-.. ......+.++...++..++++.+.+..+ ++
T Consensus 268 -~gK~l~gG~p~~av~~~~~~~~~~~~~~~-------------------~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~ 327 (431)
T d1zoda1 268 -LSKTLGAGLPLAAIVTSAAIEERAHELGY-------------------LFYTTHVSDPLPAAVGLRVLDVVQRDGLVAR 327 (431)
T ss_dssp -ECHHHHTTSSCEEEEECHHHHHHHHHTTC-------------------CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred -cccccccccccceeeeeecchhhhhcccc-------------------cccCCCCCCcchHHHHHHHHHHhhhhhhhHH
Confidence 668 4443446666776655433211000 0011234666677777778887766432 23
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcCccccEEEEEeC---------CCChHHHHHHHhhhcCeEeccCCCCCh
Q 012718 345 IHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVE---------NIHPTDIATLLDQQYGVATRSGHHCAQ 415 (458)
Q Consensus 345 ~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~~~~l~~~~gi~~~~g~~~~~ 415 (458)
..+.-..+.+.+.+.+.+.+-+.-. ...|.++.+.+. ......+.+.+.++ |+....-..
T Consensus 328 ~~~~g~~l~~~l~~~~~~~~~i~~v-------rG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~-Gl~~~~~~~--- 396 (431)
T d1zoda1 328 ANVMGDRLRRGLLDLMERFDCIGDV-------RGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNL-GLSMNIVQL--- 396 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEE-------EEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHT-TEECCEECC---
T ss_pred HHHHHHHHhhhhhhhhhcCCCeEEE-------eecceEEEEEEecCCcccCccHHHHHHHHHHHHHh-CcccCeeee---
Confidence 3333333444444444555433211 123556666552 11135678888888 886431110
Q ss_pred hhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 416 PLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 416 ~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
-+..+.+|+++++..|++|||+++++|+++++++
T Consensus 397 -----~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v 430 (431)
T d1zoda1 397 -----PGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 430 (431)
T ss_dssp -----TTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 0115789999999899999999999999999875
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.70 E-value=3.7e-16 Score=151.55 Aligned_cols=335 Identities=14% Similarity=0.142 Sum_probs=199.7
Q ss_pred CCeEEecCC------CCCCCcHHHHHHHHHHHHHhccCCCCCcchhhhHHHHHHHHHHHHHHHHcCCCCCCcEEEeCChh
Q 012718 66 KKLVYLDNA------ATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNAT 139 (458)
Q Consensus 66 ~~~i~l~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t 139 (458)
++.-|+|.. ..|--.+.+.+++.+.+............. .......+++.+.+.+..+...+ .++|++||+
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~--~~~~~~a~~lae~l~~~~~~~~~-~v~f~~sGs 127 (461)
T d1ohwa_ 51 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI--LPPENFVEKLRESLLSVAPKGMS-QLITMACGS 127 (461)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT--SCBTTHHHHHHHTGGGGCCTTCC-EEEEESSHH
T ss_pred CCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccc--cchHHHHHHHHHHHHhhhccCcc-eeeeecchh
Confidence 445667642 245567788888887654421100000000 01122234455555555554433 899999999
Q ss_pred HHHHHHHHHcCC------------------------CCCCCCCEEEEcCCCCccchHHHHHHH-----HHcC---CeEEE
Q 012718 140 EAINLVAYSWGL------------------------SNLKSGDEVILTVAEHHSAIVPWQLVA-----QKTG---ANLKF 187 (458)
Q Consensus 140 ~a~~~~~~~l~~------------------------~~~~~g~~vl~~~~~~~s~~~~~~~~a-----~~~g---~~~~~ 187 (458)
+|++.++...+. ....++.+|+....+||+.......+. +... .....
T Consensus 128 eAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~ 207 (461)
T d1ohwa_ 128 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 207 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCE
T ss_pred hhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcc
Confidence 999999875421 112345689999999998765443321 0000 01111
Q ss_pred EeCCCC-C-------------CCCHHHHHHhh------cCCceEEEEecccCcCccccc----HHHHHHHHHhcCcEEEE
Q 012718 188 LNLNDD-E-------------SPDLDKLKEML------SRKTKLVVIHHISNMLASILP----IEEIVHWSHDVGAKVLV 243 (458)
Q Consensus 188 v~~~~~-~-------------~~d~~~l~~~l------~~~~~~v~~~~~~n~tG~~~~----l~~i~~l~~~~~~~viv 243 (458)
.+.... + ..+.+++++.+ ..++.+|+++.++...|...+ +++|.++|++||+++|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~ 287 (461)
T d1ohwa_ 208 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV 287 (461)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceec
Confidence 111100 0 01234444444 246789999999998888776 89999999999999999
Q ss_pred ecccc-CCccc--CCCC--CC--CCcEEEecccCCCCCCceeEEEEeccccccCCCccccCcceEeeecCCCCCCCCCCc
Q 012718 244 DACQS-VPHMV--VDVQ--GL--DADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSR 316 (458)
Q Consensus 244 D~a~~-~g~~~--~~~~--~~--~~d~~~~s~~K~~gp~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (458)
|+++. +|..- .... .. .+|+++ +.|.++. |++.... .+....+...
T Consensus 288 DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~~---g~~~~~~-~~~~~~~~~~--------------------- 340 (461)
T d1ohwa_ 288 DEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT---GGFFHKE-EFRPNAPYRI--------------------- 340 (461)
T ss_dssp ECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGSS---EEEEECG-GGSCSSTTSS---------------------
T ss_pred cccccccccccccccccccccccCchhhh--hhhcccc---ccccccc-cccccccccc---------------------
Confidence 99986 33220 1111 12 378887 6674432 3333332 2222111111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc----CCC-E-EEeCCCCCCcCccccEEEEEeCCC
Q 012718 317 FEAGTPAIGEAIGLGAAIDYLSTIGMQKIHAYEMELAKYLYENLLS----IPN-I-RIYGPKPSEHVQRAALCSFNVENI 390 (458)
Q Consensus 317 ~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~l~~~l~~~L~~----~~~-~-~~~~~~~~~~~~~~~~v~~~~~~~ 390 (458)
......+....++..++|+.+.+. .+.++.+++.++|.+.|.+ .|. + ++ ...|.++.+.+++.
T Consensus 341 ~~T~~g~p~~~aaa~a~l~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~v--------rG~Gl~~~ie~~~~ 409 (461)
T d1ohwa_ 341 FNTWLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFISRV--------RGRGTFCSFDTPDE 409 (461)
T ss_dssp CCSCSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEE--------EEETTEEEEECSSH
T ss_pred ccccccccccchhhcccchhhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCceEEe--------eeeeEEEEEEcCCH
Confidence 112245566777777888888764 3455555566666665544 332 1 12 12366888888642
Q ss_pred -ChHHHHHHHhhhcCeEeccCCCCChhhHhhcCCCCeEEEeeCCCCCHHHHHHHHHHHHHHHHhh
Q 012718 391 -HPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 454 (458)
Q Consensus 391 -~~~~~~~~l~~~~gi~~~~g~~~~~~~~~~~g~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 454 (458)
...++.+.+.++ |+.+.+.. +..||+.+++..|++|+|.+++.|+++++++
T Consensus 410 ~~~~~i~~~~~~~-Gll~~~~~------------~~~ir~~PpL~it~~eid~~~~~l~~~l~ef 461 (461)
T d1ohwa_ 410 SIRNKLISIARNK-GVMLGGCG------------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 461 (461)
T ss_dssp HHHHHHHHHHHHT-TEECEEET------------TTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHC-CeEEeeCC------------CCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence 235788888888 99986532 5689999999899999999999999999864
|