Citrus Sinensis ID: 012721

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
Protein Sequence
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQG
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEccccccccccccccEEEEEEcccccEEEEEccccEEEEEEEEccccccccccccccEEEEEEcccccccccEEEEEEEcccccccEEccEEEcccEEEEEEEEcccccEEEEEEcccEEEEEEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEEccccccccccccEEEEEEEcccccEEEEEccccEEEEEEccccccccccccEEEccccccccccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccccEEEEEEccccccccccccccccccccEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEccccccccccccccEEEEEEEcccccEEEEcccccEEEEEEEccccccccccccHHHHHHHccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHEEEcccccccEEEEEccccEEEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccccccccEcccccEEEccccEEEEcccEEEEEEEEEcccccEEEEccccEEEEEccccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEccccEEEHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcHccEEEcccccEEEEEcEEEEEEEEcccccccEEEEcHHHHHHHHHHHHHHccccEccEEEEEcccccEEEEEccccEEEEEEccccccccEEEEEcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MILNREEASASLEWKCSqafgernpdeelqdvdivsaiefdktgdylavgdrggRVILFetvggkntpnqhisRSELEKqmdftstshpeyryktefqshepefdylKSLEIEEKINRVrwcaapngsmfilstndktiKLWKVRDQKVKKikemdhfpfvssentllaeknfmnehnppsfahgyhleWTENMATKIANVgnsvharcqkvyphahdfninsisnnsdcetfvsaDDLRINLWnleisdqcfnivdmkpsnmddltevitsaefhpIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAaeshgsksfFTEIIASISdikfandgqhllsrDYMNLKLWDirmdstpvatfkihehlrpklcdlynndsifdkfecsvsgdglhfatgsySNLLRIFShgvgsaggitveagknenrkpilqaaprarrssLSNLtrglyrqg
Flexible Loop (DISEMBL)
milnreeasasleWKCSQAFgernpdeelqDVDIVSAIEFDKTGDYLAVGDRGGRVILfetvggkntpnqhisrseleKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCaapngsmfilstndktiklWKVRDQKVKkikemdhfpfvsSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGItveagknenrkpilqaaprarrsslsnltrglyrqg
Low Complexity Region (SEG)
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFninsisnnsDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQG
Disordered region (IsUnstruct)
*****************************QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG***************************************EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV**********************************
Disordered Region (DISOPRED)
**************KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI************************************
Disordered Region (DISEMBL)
************EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQG
Disordered Region (DISPRO)
**********SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG*********************STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM***********************************TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	457	2.2.26 [Sep-21-2011]
Q39247	501	Serine/threonine protein	yes	no	0.951	0.868	0.606	1e-153
Q0E2P1	525	Serine/threonine protein	yes	no	0.940	0.819	0.573	1e-149
A2X2K3	525	Serine/threonine protein	N/A	no	0.940	0.819	0.573	1e-149
Q5Z8Z7	581	Serine/threonine protein	no	no	0.958	0.753	0.562	1e-147
Q38821	513	Serine/threonine protein	no	no	0.958	0.853	0.571	1e-146
Q12702	463	Protein phosphatase PP2A	yes	no	0.853	0.842	0.493	1e-114
P53031	508	Protein phosphatase PP2A	N/A	no	0.789	0.710	0.486	1e-104
Q54Q99	483	Serine/threonine-protein	yes	no	0.868	0.821	0.480	1e-102
Q6DIY3	447	Serine/threonine-protein	yes	no	0.824	0.843	0.452	1e-101
Q00362	526	Protein phosphatase PP2A	yes	no	0.835	0.726	0.462	1e-101

>sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1

 Score =  541 bits (1394), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/452 (60%), Positives = 341/452 (75%), Gaps = 17/452 (3%)

Query: 11  SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
           SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE     +T + 
Sbjct: 15  SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71

Query: 71  HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
             SR +LE Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F
Sbjct: 72  GGSRKDLE-QTDY-PVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129

Query: 131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFA 183
           +LSTNDKTIK WKV+++K+KKI EM+  P  SS        N L A+K         SF 
Sbjct: 130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189

Query: 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINL 243
            G        +   + +   ++ ARC++VY HAHD++INSISN+SD ETF+SADDLR+NL
Sbjct: 190 PGGIPSL--RLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNL 247

Query: 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303
           WNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALC
Sbjct: 248 WNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALC 307

Query: 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 363
           D   ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA
Sbjct: 308 DSHTKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVA 366

Query: 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423
           ++++HEHLRP+LCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS    T+
Sbjct: 367 SYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATL 426

Query: 424 EAGKNENRKPILQAAPRARRSSLSNLTRGLYR 455
           EA KN  R+ I   A  +R  S+ ++TR + R
Sbjct: 427 EASKNPMRRQIQTPARPSR--SIGSMTRVVRR 456

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0E2P1|2ABB_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1

 Score =  528 bits (1359), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/467 (57%), Positives = 341/467 (73%), Gaps = 37/467 (7%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +++     
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDS----A 86

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
           SRSELE+Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+L
Sbjct: 87  SRSELERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLL 145

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKN 172
           STNDKTIK WKV+++KVK+I  M+     +S+                    N   +EK 
Sbjct: 146 STNDKTIKYWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKL 202

Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDC 230
           +   +N   F  G       ++   +   G  ++   RC++VY HAHD++INSISNNSD 
Sbjct: 203 YNFPNNDLLFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDG 258

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ET++SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G
Sbjct: 259 ETYISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKG 318

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
            +RL+D+RQSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM L
Sbjct: 319 SIRLIDLRQSALCDNHAKLFEEH-EAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTL 377

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410
           KLWDI MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+
Sbjct: 378 KLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRV 437

Query: 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQG 457
           F    GSA   T+EA +N  R+ +      AR  +L++LTR + R G
Sbjct: 438 FGCTPGSAEATTLEASRNPMRRQVANPTRPAR--TLTSLTRAVRRGG 482

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X2K3|2ABB_ORYSI Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2

 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/467 (57%), Positives = 341/467 (73%), Gaps = 37/467 (7%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +++     
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDS----A 86

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
           SRSELE+Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+L
Sbjct: 87  SRSELERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLL 145

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKN 172
           STNDKTIK WKV+++KVK+I  M+     +S+                    N   +EK 
Sbjct: 146 STNDKTIKYWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKL 202

Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDC 230
           +   +N   F  G       ++   +   G  ++   RC++VY HAHD++INSISNNSD 
Sbjct: 203 YNFPNNDLLFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDG 258

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ET++SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G
Sbjct: 259 ETYISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKG 318

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
            +RL+D+RQSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM L
Sbjct: 319 SIRLIDLRQSALCDNHAKLFEEH-EAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTL 377

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410
           KLWDI MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+
Sbjct: 378 KLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRV 437

Query: 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQG 457
           F    GSA   T+EA +N  R+ +      AR  +L++LTR + R G
Sbjct: 438 FGCTPGSAEATTLEASRNPMRRQVANPTRPAR--TLTSLTRAVRRGG 482

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z8Z7|2ABA_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2

 Score =  520 bits (1339), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/471 (56%), Positives = 343/471 (72%), Gaps = 33/471 (7%)

Query: 6   EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65
           ++   ++EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +
Sbjct: 23  QQGHPTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAR 82

Query: 66  NTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP 125
           +    + SR E+E+Q D   T HPE+RYK+EFQSHEPEFDYLKSLEIEEKIN++RWC   
Sbjct: 83  D----NASRREMERQ-DAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTA 137

Query: 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-----------HFPFVSSENTLLA----- 169
           N S+ +LSTNDKTIK WKV+++KVK++  M+                SS   LL      
Sbjct: 138 NNSLSLLSTNDKTIKYWKVQEKKVKQVSVMNLDSRSVGTGTSSSASTSSSRGLLPNGGCS 197

Query: 170 -EKNFMNEHN--PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN 226
            + +F+N     PP    GY    +  +   +A+   ++ ARC++VY HAHD++INSIS 
Sbjct: 198 DKSSFLNSDILFPPG---GYP---SLRLPVVVASQDVNLVARCRRVYAHAHDYHINSIST 251

Query: 227 NSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286
           NSD ET++SADDLRINLWNLEI++Q FNIVD+KP NM+DLTEVIT AEFHP +CN LAYS
Sbjct: 252 NSDGETYISADDLRINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYS 311

Query: 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346
           SS+G +RL+D+RQSALCD+ ++I  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRD
Sbjct: 312 SSKGSIRLIDLRQSALCDNHSKIFEEH-EAPGSRSFFTEIIASISDIKFSRDGRYILSRD 370

Query: 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406
           YM LKLWD+ MDS PV+TF++HEHLRPKLCDLY NDSIFDKFEC +SGDGLH ATGSY N
Sbjct: 371 YMTLKLWDLNMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGN 430

Query: 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQG 457
           L R+F    GS    T+EA +N  R+ I+   P     +L++L RG+ R G
Sbjct: 431 LFRVFGCTPGSTEATTLEASRNPMRRQIVN--PTRPTRTLTSLARGVRRGG 479

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38821|2ABA_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2

 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/467 (57%), Positives = 343/467 (73%), Gaps = 29/467 (6%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           + S  LEW+ SQ FGER+  EE+Q+VDI+SAIEFD +G++LA GDRGGRV+LFE     +
Sbjct: 13  DPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERT---D 69

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
           T N   +R ELE + D+    HPE+RYKTEFQSH+PEFDYLKSLEIEEKIN++RWC   N
Sbjct: 70  TNNSSGTRRELE-EADYP-LRHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTAN 127

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF------------M 174
           G++F+LSTNDKTIK WKV+D+K+KKI +M+  P  +  N  +A  +             +
Sbjct: 128 GALFLLSTNDKTIKFWKVQDKKIKKICDMNSDPSRTVGNGTVASSSNSNITNSCLVNGGV 187

Query: 175 NEHNPPSFAHGYHLEW----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
           +E N  S  + + L      +  +   + +  +S  ARC++VY HAHD++INSISNNSD 
Sbjct: 188 SEVNN-SLCNDFSLPAGGISSLRLPVVVTSHESSPVARCRRVYAHAHDYHINSISNNSDG 246

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLEIS+Q FNIVD+KP+ M+DL+EVITSAEFHP +CN+LAYSSS+G
Sbjct: 247 ETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKG 306

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
            +RL+D+RQSALCD  +++  +  E  G KSFFTEIIAS+SDIKFA +G++LLSRDYM L
Sbjct: 307 SIRLIDLRQSALCDSHSKLFEEP-EQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTL 365

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410
           KLWDI MD+ PVATF++HE+L+PKLCDLY NDSIFDKFEC +SG+GL  ATGSYSNL R+
Sbjct: 366 KLWDINMDAGPVATFQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRAATGSYSNLFRV 425

Query: 411 FSHGVGSAGGITVEAGKNENRK--PILQAAPRARRSSLSNLTRGLYR 455
           F    GS    T+EA +N  R+  PI     RA    LS++TR + R
Sbjct: 426 FGVAPGSTETATLEASRNPMRRHVPIPSRPSRA----LSSITRVVSR 468

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q12702|2ABA_SCHPO Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/442 (49%), Positives = 293/442 (66%), Gaps = 52/442 (11%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           +WK +Q FG++   E++ + DI+SA+EFD TGDYLA GD+GGRV+LFE            
Sbjct: 10  QWKFAQCFGDKGDVEDITEADIISAVEFDHTGDYLATGDKGGRVVLFE------------ 57

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
            R+  +K          EY++ TEFQSHEPEFDYLKSLEIEEKIN++RWC   N + F+L
Sbjct: 58  -RNHSKKGC--------EYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLL 108

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192
           STNDKTIKLWK+ ++ +K                ++AE N  +  + P    G     ++
Sbjct: 109 STNDKTIKLWKLYEKNLK----------------VVAENNLSDSFHSP--MQGPLTTPSQ 150

Query: 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 252
               ++ +    + A  ++VY +AH ++INSIS NSD ET++SADDLRINLWNL ISD  
Sbjct: 151 LRLPRLNHHDMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDLRINLWNLSISDHS 210

Query: 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312
           FNIVD+KP NM++LTEVITSAEFHPI CN L YSSS+G ++L+D+RQSALCD+  ++  D
Sbjct: 211 FNIVDIKPENMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQSALCDNPCKLFED 270

Query: 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLR 372
             E   SKSFF+EII+SISD+KF+ +G+++LSRDY+ LK+WD+ M+  PV T  +H+ LR
Sbjct: 271 -QEDQDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAPVKTIPLHDVLR 329

Query: 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF---SHGVGSAGGITVEAGKNE 429
            KLCDLY ND IFDKFEC+ SGD  H  +GSYSN   I+   S   G  G I ++A K  
Sbjct: 330 SKLCDLYENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDSSLPGDRGQIVLQADK-- 387

Query: 430 NRKPILQAAPRARRSSLSNLTR 451
                  AA RAR+S+ +N+ +
Sbjct: 388 -------AAFRARKSAANNVPK 402

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53031|2ABA_CANTR Protein phosphatase PP2A regulatory subunit B OS=Candida tropicalis GN=CDC55 PE=3 SV=1

 Score =  380 bits (976), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/403 (48%), Positives = 274/403 (67%), Gaps = 42/403 (10%)

Query: 17  SQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSE 76
           SQ FG++   E + + DI+S +EFD TGD+LA GD+GGRV+LFE             R++
Sbjct: 6   SQCFGDKGDIENITEADIISTVEFDHTGDFLATGDKGGRVVLFE-------------RNQ 52

Query: 77  LEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND 136
            +K+         EY++ TEFQSH+ EFDYLKSLEIEEKIN+++W  + N S+ +LSTND
Sbjct: 53  SKKKQS------CEYKFFTEFQSHDAEFDYLKSLEIEEKINKIKWLKSANDSLCLLSTND 106

Query: 137 KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-NMA 195
           KTIKLWK++++++K +          SEN L    N +N H P S      L+  +  + 
Sbjct: 107 KTIKLWKIQERQIKLV----------SENNL----NGLN-HLPSSNIGIESLKLPQLQLH 151

Query: 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNI 255
            K+      + A+ +K+Y +AH ++INSIS NSD ET++SADDLRINLWNL I+DQ FNI
Sbjct: 152 DKL------ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLGIADQSFNI 205

Query: 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 315
           VD+KP+NM++LTEVITSAEFHP+ CNL  YSSS+G ++L DMR ++LCD  A+I  +  +
Sbjct: 206 VDIKPANMEELTEVITSAEFHPLQCNLFMYSSSKGTIKLSDMRSNSLCDSHAKIFEEYLD 265

Query: 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 375
              S +FFTEI +SISD+KF++DG+++ SRDYM +K+WD+ M++ P+ T  +HEHLR +L
Sbjct: 266 P-SSHNFFTEITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPIKTIDVHEHLRERL 324

Query: 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418
           CD Y ND+IFDKFE    GD     TGSY+N   I+ + V + 
Sbjct: 325 CDTYENDAIFDKFEVQFGGDNKSVMTGSYNNQFVIYPNAVNTG 367

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Candida tropicalis (taxid: 5482)

>sp|Q54Q99|PH2AB_DICDI Serine/threonine-protein phosphatase 2A regulatory subunit phr2AB OS=Dictyostelium discoideum GN=phr2aB PE=3 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/429 (48%), Positives = 287/429 (66%), Gaps = 32/429 (7%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           L+W+ SQ FG +  +E+  D ++V AIEFD+TGD++AVGD+GG+V+L +    K    Q 
Sbjct: 5   LDWRFSQTFGGKG-NEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRTHDK----QS 59

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
             +S+L           PEYR+ +EFQSHEPEFDYLKSLEIEEKIN+++WC   N + F+
Sbjct: 60  SKKSKL-----------PEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFL 108

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLEW 190
           L+TNDKTIKLWKV ++K+K++         S   +L +       H    + + G H   
Sbjct: 109 LTTNDKTIKLWKVYEKKIKQVSTSATTTGPSYNGSLASNNTRSPSHTTYIYNSSGAHNMN 168

Query: 191 TENMAT------------KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD 238
                +            K+      V A  +K++ +AH ++INSIS NSD ET++S+DD
Sbjct: 169 NNMNNSNNNNNLNNFKIPKLTTRETVVTATPRKIFQNAHAYHINSISLNSDGETYISSDD 228

Query: 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298
           LRI+LWNL I+ +CFN+VD+KP+NM+DLTEVITSAEFHP  CN+  YSSS+G ++L D+R
Sbjct: 229 LRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLGDLR 288

Query: 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 358
            SALCD+ A++  +  E   +KSFF+EII+SISDIKF+ DG+++LSRD++ LKLWDI M+
Sbjct: 289 SSALCDNHAKVFEE-YEDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDINME 347

Query: 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418
           + PV T +IH++L+PKLCDLY ND IFDKFEC+++ DG    TGSY N L I+     S 
Sbjct: 348 NKPVKTIQIHDYLKPKLCDLYENDCIFDKFECTLNHDGTQMLTGSYHNYLHIYDR--NSK 405

Query: 419 GGITVEAGK 427
             + +EA K
Sbjct: 406 QDVCLEASK 414

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Dictyostelium discoideum (taxid: 44689)

>sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1

 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/438 (45%), Positives = 276/438 (63%), Gaps = 61/438 (13%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
            +W  SQ  G    DE++ + DI+S +EF+ +GD LA GD+GGRV++F+           
Sbjct: 10  FQWCFSQVKGA--IDEDVAEADIISTVEFNCSGDLLATGDKGGRVVIFQR---------- 57

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
                 E++      S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+
Sbjct: 58  ------EQENKSRPHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFL 111

Query: 132 LSTNDKTIKLWKV--RDQKVKKI-------KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182
           LSTNDKTIKLWK+  RD++V+         +  D F   S    +L   + M E +P   
Sbjct: 112 LSTNDKTIKLWKISERDKRVEGYNLKDDDGRLRDPFRITSLRVPILKPMDLMVEASP--- 168

Query: 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRIN 242
                                      ++++ +AH ++INSIS NSD ET++SADDLRIN
Sbjct: 169 ---------------------------RRIFANAHTYHINSISVNSDHETYLSADDLRIN 201

Query: 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302
           LW+LEI+D+ FNIVD+KP+NM++LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SAL
Sbjct: 202 LWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSAL 261

Query: 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 362
           CD  ++   +  E   S+SFF+EII+SISD+KF+N G+++++RDY+++K+WD+ M+S PV
Sbjct: 262 CDRHSKFFEE-PEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPV 320

Query: 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 422
            T+++HE+LR KLC LY ND IFDKFEC  +G      TGSY+N  R+F     +   IT
Sbjct: 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDR--NTRRDIT 378

Query: 423 VEAGKNENRKPILQAAPR 440
           +EA + E+ KP     PR
Sbjct: 379 LEASR-ESSKPRAILKPR 395

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Xenopus tropicalis (taxid: 8364)

>sp|Q00362|2ABA_YEAST Protein phosphatase PP2A regulatory subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC55 PE=1 SV=2

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/411 (46%), Positives = 269/411 (65%), Gaps = 29/411 (7%)

Query: 8   ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT 67
           A  + ++K SQ FG++  D  + + D+++A+EFD TG+YLA GD+GGRV+LFE       
Sbjct: 2   AQNNFDFKFSQCFGDK-ADIVVTEADLITAVEFDYTGNYLATGDKGGRVVLFER------ 54

Query: 68  PNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG 127
                           +++ H EY++ TEFQSH+ EFDYLKSLEIEEKIN ++W      
Sbjct: 55  ----------------SNSRHCEYKFLTEFQSHDAEFDYLKSLEIEEKINEIKWLRPTQR 98

Query: 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187
           S F+LSTNDKTIKLWKV ++ +K + + +      +E    A+K   + HN    +    
Sbjct: 99  SHFLLSTNDKTIKLWKVYEKNIKLVSQNN-----LTEGVTFAKKGKPDNHNSRGGSVRAV 153

Query: 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE 247
           L        +++     + A  +++Y +AH ++INSIS NSD ETF+SADDLRINLWNL+
Sbjct: 154 LSLQSLKLPQLSQHDKIIAATPKRIYSNAHTYHINSISLNSDQETFLSADDLRINLWNLD 213

Query: 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307
           I DQ FNIVD+KP+NM++LTEVITSAEFHP  CNL  YSSS+G ++L DMRQ++LCD+  
Sbjct: 214 IPDQSFNIVDIKPTNMEELTEVITSAEFHPQECNLFMYSSSKGTIKLCDMRQNSLCDNKT 273

Query: 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKI 367
           +   +  +   + +FFTEI +SISDIKF+ +G+++ SRDY+ +K+WD+ MD+ P+ T  I
Sbjct: 274 KTFEEYLDPI-NHNFFTEITSSISDIKFSPNGRYIASRDYLTVKIWDVNMDNKPLKTINI 332

Query: 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418
           HE L+ +L D Y ND+IFDKFE + SGD     TGSY+N   I+ + V S 
Sbjct: 333 HEQLKERLSDTYENDAIFDKFEVNFSGDSSSVMTGSYNNNFMIYPNVVTSG 383

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
359491379	507	PREDICTED: serine/threonine protein phos	0.982	0.885	0.736	0.0
297733754	503	unnamed protein product [Vitis vinifera]	0.973	0.884	0.734	0.0
224133594	520	predicted protein [Populus trichocarpa]	0.975	0.857	0.711	0.0
255540613	506	protein phosphatase pp2a regulatory subu	0.967	0.873	0.748	0.0
449440662	514	PREDICTED: serine/threonine protein phos	0.995	0.885	0.661	1e-174
356508685	506	PREDICTED: serine/threonine protein phos	0.986	0.891	0.626	1e-165
449477652	416	PREDICTED: serine/threonine protein phos	0.879	0.966	0.673	1e-160
224088860	521	predicted protein [Populus trichocarpa]	0.954	0.836	0.599	1e-152
224128562	512	predicted protein [Populus trichocarpa]	0.925	0.826	0.617	1e-152
356556686	514	PREDICTED: serine/threonine protein phos	0.943	0.838	0.6	1e-151

>gi|359491379|ref|XP_002278753.2| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/460 (73%), Positives = 400/460 (86%), Gaps = 11/460 (2%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           ++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE    K+
Sbjct: 6   DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFERKDEKD 65

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
           + NQ  SR+ELE Q+DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN
Sbjct: 66  SLNQWHSRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPN 124

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186
            S+FILSTNDKTIKLWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY
Sbjct: 125 ESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGY 184

Query: 187 HLEWTE---NMA------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD 237
            LEWTE   NM+       K+AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSAD
Sbjct: 185 ALEWTEKIDNMSPSQDTHAKVANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSAD 244

Query: 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297
           DLRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+
Sbjct: 245 DLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDL 304

Query: 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357
           RQSA+CDH+ARIL+   ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM
Sbjct: 305 RQSAICDHNARILQHG-ESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRM 363

Query: 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417
           +++PVA FKIHEHLRPKLCDLYNND+IFDKFEC +SG GLHFATGSYSNLLRIFS+GVGS
Sbjct: 364 ETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGS 423

Query: 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQG 457
             GIT+EA +N NRK  LQAAP+ARRSS+SNLTRG  RQ 
Sbjct: 424 EEGITMEASRNPNRKSHLQAAPKARRSSISNLTRGFSRQA 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733754|emb|CBI15001.3| unnamed protein product [Vitis vinifera]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/460 (73%), Positives = 398/460 (86%), Gaps = 15/460 (3%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           ++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE    K+
Sbjct: 6   DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFER---KD 62

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
             + H SR+ELE Q+DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN
Sbjct: 63  EKDWH-SRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPN 120

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186
            S+FILSTNDKTIKLWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY
Sbjct: 121 ESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGY 180

Query: 187 HLEWTE---NMA------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD 237
            LEWTE   NM+       K AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSAD
Sbjct: 181 ALEWTEKIDNMSPSQDTHAKRANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSAD 240

Query: 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297
           DLRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+
Sbjct: 241 DLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDL 300

Query: 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357
           RQSA+CDH+ARIL+   ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM
Sbjct: 301 RQSAICDHNARILQHG-ESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRM 359

Query: 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417
           +++PVA FKIHEHLRPKLCDLYNND+IFDKFEC +SG GLHFATGSYSNLLRIFS+GVGS
Sbjct: 360 ETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGS 419

Query: 418 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQG 457
             GIT+EA +N NRK  LQAAP+ARRSS+SNLTRG  RQ 
Sbjct: 420 EEGITMEASRNPNRKSHLQAAPKARRSSISNLTRGFSRQA 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133594|ref|XP_002321613.1| predicted protein [Populus trichocarpa] gi|222868609|gb|EEF05740.1| predicted protein [Populus trichocarpa]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/458 (71%), Positives = 383/458 (83%), Gaps = 12/458 (2%)

Query: 9   SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP 68
           S  L+WK SQ FGE  P E+LQDVD+VS+I F+K+GDYLAVGDRGGRV++F+   GK+TP
Sbjct: 16  SPPLDWKFSQVFGETTPGEDLQDVDVVSSIGFEKSGDYLAVGDRGGRVVIFQAKHGKHTP 75

Query: 69  NQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 128
           N  ++R+ELE+ +D   T+HPEY+YKTEFQSHEPEFDYLKS+EIEEKINRV+WC+  NGS
Sbjct: 76  NSFLNRNELER-LDCAFTTHPEYQYKTEFQSHEPEFDYLKSMEIEEKINRVKWCSTSNGS 134

Query: 129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188
           +FILSTNDKTIKLWKV ++K+KK++EM+H   V SEN LL E +FM+E + P   +GY+L
Sbjct: 135 LFILSTNDKTIKLWKVSEKKLKKVREMEHHSVVCSENDLLGEGSFMSELDKPPTTNGYNL 194

Query: 189 EWTENMA----------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD 238
           +W E +A          TKI +   +  A C+KVY HAHDFNINSISNNSD ETF+S+DD
Sbjct: 195 DWAEKIAKDTLSSQEVQTKITHTEEATRANCRKVYAHAHDFNINSISNNSDGETFISSDD 254

Query: 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298
           LRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT AEFHPI+CNLLAYSSSRGF RLVDMR
Sbjct: 255 LRINLWNLEISDQCFNIIDMKPSNMEDLTEVITVAEFHPIHCNLLAYSSSRGFTRLVDMR 314

Query: 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 358
           QSA+CDHSARIL+DA E  GSKSFFTE+IASISD+KF  DGQH+L+RDYMNLKLWD+RMD
Sbjct: 315 QSAICDHSARILQDA-ECRGSKSFFTELIASISDMKFTYDGQHILTRDYMNLKLWDMRMD 373

Query: 359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418
           S+PVA FKIHEHLRPKL DLYN+DSIFDKFEC +SGDGLHFATGSYSN LRIFSHGVG+ 
Sbjct: 374 SSPVAVFKIHEHLRPKLSDLYNDDSIFDKFECCISGDGLHFATGSYSNNLRIFSHGVGNE 433

Query: 419 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ 456
            GIT+EA KN NR+ IL +  R RRSSLSN+ RG YRQ
Sbjct: 434 EGITIEASKNPNRRSILHSTSRPRRSSLSNMARGFYRQ 471

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540613|ref|XP_002511371.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis] gi|223550486|gb|EEF51973.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/453 (74%), Positives = 382/453 (84%), Gaps = 11/453 (2%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           LEWK SQ FGER P E++QD D+VSAIEFDK+GDYLAVGDRGGRV++FE    K+TPNQ+
Sbjct: 14  LEWKFSQVFGERIPGEDVQDADVVSAIEFDKSGDYLAVGDRGGRVVIFERKDRKDTPNQY 73

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
            SR+ELE  +DFT T HP Y+YKTEFQSHEPEFDYLKSLEIEEKINR++WCA PNGS+FI
Sbjct: 74  NSRNELE-TLDFTFTGHPIYQYKTEFQSHEPEFDYLKSLEIEEKINRIKWCATPNGSLFI 132

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
           LSTNDKTIKLWKV++ K KK+KE+D    V SE+ LLAE++F+ E   PS  +GYHL WT
Sbjct: 133 LSTNDKTIKLWKVKECKAKKVKEIDPTSIVCSESALLAERSFIREQGKPS--NGYHLGWT 190

Query: 192 ENMA-------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLW 244
           EN +       TK A   ++  A C+KVY HAHDFNINSISNNSD ETF+SADDLRINLW
Sbjct: 191 ENNSSPFQEGHTKFACAEDTTRASCRKVYAHAHDFNINSISNNSDGETFISADDLRINLW 250

Query: 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 304
           NLEISDQCFNI+DMKPSNM+DLTEVITSAEFHP+YCN+LAYSSSRGF+ LVDMRQSALCD
Sbjct: 251 NLEISDQCFNIIDMKPSNMEDLTEVITSAEFHPLYCNMLAYSSSRGFIHLVDMRQSALCD 310

Query: 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT 364
            SARIL+DA E  GSKSFFTEIIASISD+KF NDG H+LSRDYMNLKLWDIRMD  P++ 
Sbjct: 311 QSARILQDA-ECRGSKSFFTEIIASISDVKFTNDGHHILSRDYMNLKLWDIRMDPLPISI 369

Query: 365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424
           FKIHEHLRPKL DLYNNDSIFDKFEC +SGDGLHFATGSYSNLLRIFS+GVGS  GITVE
Sbjct: 370 FKIHEHLRPKLSDLYNNDSIFDKFECCISGDGLHFATGSYSNLLRIFSYGVGSENGITVE 429

Query: 425 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQG 457
           A KN NRK + ++  RARRSSLSNLTRG Y  G
Sbjct: 430 ASKNPNRKSLPRSTSRARRSSLSNLTRGFYWHG 462

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440662|ref|XP_004138103.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 312/472 (66%), Positives = 373/472 (79%), Gaps = 17/472 (3%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M +  +   A  +WK SQ FGER   E++QDVDI+SAI FDKTGD LA+GDRGGRVI+FE
Sbjct: 1   MTVGNDSLCAPPQWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFE 60

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
              GK+T   + +RS+LE Q++ T   HPEY+YKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 61  RKDGKDTFKNYPTRSKLE-QLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIK 119

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           WC +PNGS FILSTNDKTIKLWKV++ KVK +KEM+   FVS EN LLAE +F +E +  
Sbjct: 120 WCVSPNGSRFILSTNDKTIKLWKVKEHKVKTVKEMNPNRFVSLENALLAEISFTSEQDKA 179

Query: 181 SFAHGYHLEWTENMATK----------IANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
           S ++G H   +ENM             IA+  N+   RC+KVY HAHD+NINSISNNSD 
Sbjct: 180 SLSNGCHWNLSENMEMSNVACKDIRGMIADQDNTSWRRCRKVYAHAHDYNINSISNNSDG 239

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLEISDQCFNI+DMKPSNM+DLTE+I+SAEFHP++CNLLAYSSSRG
Sbjct: 240 ETFISADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEIISSAEFHPLHCNLLAYSSSRG 299

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
           F+RLVDMRQSALCDHSA +LR   E +  KSFFTEII+SISDIKF++DG+ ++SRDYMNL
Sbjct: 300 FIRLVDMRQSALCDHSAILLR-TEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNL 358

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410
           KLWDI   S+PVA FKIHEHLRP+LC+LY+NDSIFD+FEC +S DGLHFATGSYSN LR+
Sbjct: 359 KLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSYSNHLRM 418

Query: 411 FSHGVGSAGGITVEAGKNENRKPILQ-----AAPRARRSSLSNLTRGLYRQG 457
           FS+G GS+ GIT E GK  +R+P LQ        RARRSSLSNLTR  +R G
Sbjct: 419 FSYGSGSSEGITTEVGKFPDRRPHLQITRQATTRRARRSSLSNLTRDFFRHG 470

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508685|ref|XP_003523085.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 293/468 (62%), Positives = 361/468 (77%), Gaps = 17/468 (3%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M  N + +SA L WK SQ  G+R P+E LQ+ DI++A+ F+K GDYLAVGDRGGRV++FE
Sbjct: 1   MTTNSDSSSAPLHWKFSQVLGQRLPNEPLQNDDIITAVAFEKRGDYLAVGDRGGRVVIFE 60

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
               K   +    R ELE Q DF ++ HPE+R+KTEFQSHEPEFDYLKS+EIEEKIN+VR
Sbjct: 61  RDDRKKNVSIANDRRELE-QRDFATSRHPEFRFKTEFQSHEPEFDYLKSVEIEEKINKVR 119

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           W  + +   FILSTNDKTIKLWKV++ KVK++KEM   P + SEN LLAE++F+      
Sbjct: 120 WWMSNDSLQFILSTNDKTIKLWKVKEHKVKQVKEMA--PPLCSENMLLAERSFVP--GLE 175

Query: 181 SFAHGYHLEWTE----------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
           + A+GYHLEW E          ++  +I  + + + A+CQKVY +AH FNINSISNNSD 
Sbjct: 176 TTANGYHLEWIEKTPKNHLLPQDIDGEIGGMEDPIRAKCQKVYAYAHSFNINSISNNSDY 235

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLE+SDQCFNI+DMKPSNM+DLTEVIT+AEFHP++CNLLAYSSS+G
Sbjct: 236 ETFISADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITAAEFHPLHCNLLAYSSSQG 295

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
           F+RL D+RQ+A+CDH++R+ +   ES GSKSFFTEI +SISDIKF NDGQHL+SR+YMN+
Sbjct: 296 FIRLSDLRQAAICDHASRMFQHG-ESSGSKSFFTEITSSISDIKFLNDGQHLISRNYMNM 354

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410
           KLWD+RM+S+PVA FKIHEHLRPKL +LYNND IFDKFEC  SGDGLHFATGSYSN++RI
Sbjct: 355 KLWDMRMESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNVVRI 414

Query: 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT-RGLYRQG 457
           FS G      I +E   N +RK I QA  R RR SLSNL  R +Y+  
Sbjct: 415 FSPGSERKEEIKLEIRGNSHRKVIHQAKSRVRRPSLSNLIPREIYQHA 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477652|ref|XP_004155082.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/414 (67%), Positives = 334/414 (80%), Gaps = 12/414 (2%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M +  +   A  +WK SQ FGER   E++QDVDI+SAI FDKTGD LA+GDRGGRVI+FE
Sbjct: 1   MTVGNDSLCAPPQWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFE 60

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
              GK+T   + +RS+LE Q++ T   HPEY+YKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 61  RKDGKDTFKNYPTRSKLE-QLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIK 119

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           WC +PNGS FILSTNDKTIKLWKV++ KVK +KEM+   FVS EN LLAE +F +E +  
Sbjct: 120 WCVSPNGSRFILSTNDKTIKLWKVKEHKVKTVKEMNPNRFVSLENALLAEISFTSEQDKA 179

Query: 181 SFAHGYHLEWTENMATK----------IANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
           S ++G H   +ENM             IA+  N+   RC+KVY HAHD+NINSISNNSD 
Sbjct: 180 SLSNGCHWNLSENMEMSNVACKDIRGMIADQDNTSWRRCRKVYAHAHDYNINSISNNSDG 239

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLEISDQCFNI+DMKPSNM+DLTE+I+SAEFHP++CNLLAYSSSRG
Sbjct: 240 ETFISADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEIISSAEFHPLHCNLLAYSSSRG 299

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
           F+RLVDMRQSALCDHSA +LR   E +  KSFFTEII+SISDIKF++DG+ ++SRDYMNL
Sbjct: 300 FIRLVDMRQSALCDHSAILLR-TEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNL 358

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
           KLWDI   S+PVA FKIHEHLRP+LC+LY+NDSIFD+FEC +S DGLHFATGSY
Sbjct: 359 KLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSY 412

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088860|ref|XP_002308570.1| predicted protein [Populus trichocarpa] gi|222854546|gb|EEE92093.1| predicted protein [Populus trichocarpa]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 275/459 (59%), Positives = 345/459 (75%), Gaps = 23/459 (5%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           LEWK +Q FGER   EE+Q+VDI+SAIEFD+TGD+LA GDRGGRV+LFE     +T +  
Sbjct: 26  LEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGGRVVLFERT---DTRDHG 82

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
            +R +LE+ MDF    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC + NG++F+
Sbjct: 83  GNRRDLER-MDFPINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQSANGALFL 141

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
           LSTNDKTIK WKV+++KVKKI +M+  P  ++ N  L   + ++  + P  A+G  L+  
Sbjct: 142 LSTNDKTIKFWKVQEKKVKKICDMNVDPAKAAGNGPLVGPS-ISTSSKPYTANGGCLDKP 200

Query: 192 ENMATK---------------IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA 236
             ++                 + ++  S+  RC+++Y HAHD++INSISNNSD ETF+SA
Sbjct: 201 LGLSNDFSFPPGGVSSLHLPVLTSIETSLVPRCRRIYAHAHDYHINSISNNSDGETFISA 260

Query: 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296
           DDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHP +CN+LAYSSSRG +RLVD
Sbjct: 261 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSRGSIRLVD 320

Query: 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 356
           MRQSALCD  +++  +  E  GS+SFFTEIIASISDIKFA DG+++LSRDYM LKLWDI 
Sbjct: 321 MRQSALCDSHSKLFEE-QEVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDIN 379

Query: 357 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416
           MDS PV+TF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    G
Sbjct: 380 MDSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTDG 439

Query: 417 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 455
           S    T+EA KN  R+ + Q   R  R SL  L+RG  R
Sbjct: 440 STEATTLEASKNPMRRQV-QTPSRPSR-SLGTLSRGFRR 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128562|ref|XP_002329034.1| predicted protein [Populus trichocarpa] gi|222839705|gb|EEE78028.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 275/445 (61%), Positives = 334/445 (75%), Gaps = 22/445 (4%)

Query: 7   EASAS----LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETV 62
           EA AS    LEWK SQ FGER   EE+Q+VDI+SAIEFD++GD+LA GDRGGRV+LFE  
Sbjct: 9   EAPASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDRSGDHLATGDRGGRVVLFERT 68

Query: 63  GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122
              +T +   SR +LE+ M +  + HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC
Sbjct: 69  ---DTKDHGGSRRDLER-MGYPISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 124

Query: 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP--------FVSSENTLLAEKNFM 174
              NG++F+LSTNDKTIK WKV+++KVKKI EM+  P          SS N+ + ++   
Sbjct: 125 QTANGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAVGNGGVASSSNSSIGKQYLA 184

Query: 175 N----EHNPPSFAHGYHLEWTENMATKIANVG-NSVHARCQKVYPHAHDFNINSISNNSD 229
           N     HN PS           ++   +      S+ ARC++VY HAHD++INSISNNSD
Sbjct: 185 NGGDKSHNLPSNDLSISPGGFPSLRLPVVTSNETSLMARCRRVYAHAHDYHINSISNNSD 244

Query: 230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 289
            ETF+SADDLRINLWNLEIS+Q FNI D+KP+NM+DLTEVITSAEFHP +CN+LAYSSS+
Sbjct: 245 GETFISADDLRINLWNLEISNQSFNICDVKPANMEDLTEVITSAEFHPSHCNMLAYSSSK 304

Query: 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 349
           G +RL+DMRQSALCD  A++  +  E+ GS+SFFTEIIASISDIKFA DG+H+LSRDYM 
Sbjct: 305 GSIRLIDMRQSALCDSHAKLFEEP-EAPGSRSFFTEIIASISDIKFARDGRHILSRDYMT 363

Query: 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 409
           LKLWDI MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC  SGDGL  ATGSYSNL R
Sbjct: 364 LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCSSGDGLRVATGSYSNLFR 423

Query: 410 IFSHGVGSAGGITVEAGKNENRKPI 434
           +F    GS    T+EA KN  R+ +
Sbjct: 424 VFGCAPGSTEASTLEASKNPMRRQV 448

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556686|ref|XP_003546654.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max]

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 279/465 (60%), Positives = 339/465 (72%), Gaps = 34/465 (7%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           LEWK SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE     +T +  
Sbjct: 18  LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDHG 74

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
            SR +LE+ MD++   HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F+
Sbjct: 75  GSRRDLER-MDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFL 133

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN-------------TLLAEKNFMNEHN 178
           LSTNDKTIK WKV+++KVKKI EM+  P  S  N               L      + +N
Sbjct: 134 LSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRPYLVNGGSPDRYN 193

Query: 179 --------PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
                   PP       L    +  T       S+ ARC++VY HAHD++INSISNNSD 
Sbjct: 194 YISNDFSFPPGGLPSLRLPMVSSHET-------SLVARCRRVYAHAHDYHINSISNNSDG 246

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHP +CN LAYSSS+G
Sbjct: 247 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKG 306

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
            +RLVD+RQSALCD  A++  +  E+ GS+SFFTEIIASISDIKF  DG+++LSRDYM L
Sbjct: 307 SIRLVDLRQSALCDSHAKLFEEQ-EAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTL 365

Query: 351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410
           KLWDI MDS PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+
Sbjct: 366 KLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRV 425

Query: 411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 455
           F    GSA   T+EA KN  R+ +   + R  RS  +++TR + R
Sbjct: 426 FGCAPGSAEATTLEASKNPMRRQVPTPS-RPSRSLGNSITRVVRR 469

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
TAIR|locus:2007963	501	ATB BETA [Arabidopsis thaliana	0.954	0.870	0.592	1.2e-136
DICTYBASE|DDB_G0283905	483	phr2aB "protein phosphatase 2A	0.868	0.821	0.462	7.9e-101
CGD|CAL0004658	519	orf19.1468 [Candida albicans (	0.468	0.412	0.525	1.3e-99
ASPGD|ASPL0000046009	472	AN1545 [Emericella nidulans (t	0.715	0.692	0.488	3.7e-99
UNIPROTKB|Q6DIY3	447	ppp2r2d "Serine/threonine-prot	0.507	0.519	0.508	1.6e-94
WB|WBGene00006352	495	sur-6 [Caenorhabditis elegans	0.531	0.490	0.516	1.8e-93
MGI|MGI:1289252	453	Ppp2r2d "protein phosphatase 2	0.507	0.512	0.504	4.8e-93
UNIPROTKB|F1NNN2	450	PPP2R2D "Serine/threonine-prot	0.507	0.515	0.5	6.2e-93
UNIPROTKB|F1NS69	451	PPP2R2D "Serine/threonine-prot	0.507	0.514	0.5	6.2e-93
UNIPROTKB|Q5ZIY5	451	PPP2R2D "Serine/threonine-prot	0.507	0.514	0.5	6.2e-93

TAIR|locus:2007963 ATB BETA [Arabidopsis thaliana (taxid:3702)]

 Score = 1338 (476.1 bits), Expect = 1.2e-136, P = 1.2e-136
 Identities = 269/454 (59%), Positives = 336/454 (74%)

Query:    11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
             SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE     +T + 
Sbjct:    15 SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71

Query:    71 HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
               SR +LE Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F
Sbjct:    72 GGSRKDLE-QTDYP-VRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129

Query:   131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFA 183
             +LSTNDKTIK WKV+++K+KKI EM+  P  SS        N L A+K         SF 
Sbjct:   130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189

Query:   184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 243
              G  +  +  +   + +   ++ ARC++VY HAHD+         D ETF+SADDLR+NL
Sbjct:   190 PG-GIP-SLRLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNL 247

Query:   244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303
             WNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALC
Sbjct:   248 WNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALC 307

Query:   304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 363
             D   ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA
Sbjct:   308 DSHTKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVA 366

Query:   364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423
             ++++HEHLRP+LCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS    T+
Sbjct:   367 SYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATL 426

Query:   424 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQG 457
             EA KN  R+ I Q   R  RS + ++TR + R+G
Sbjct:   427 EASKNPMRRQI-QTPARPSRS-IGSMTR-VVRRG 457

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=ISS

DICTYBASE|DDB_G0283905 phr2aB "protein phosphatase 2A B55 regulatory subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 202/437 (46%), Positives = 284/437 (64%)

Query:    12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
             L+W+ SQ FG +  +E+  D ++V AIEFD+TGD++AVGD+GG+V+L +    K    Q 
Sbjct:     5 LDWRFSQTFGGKG-NEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRTHDK----QS 59

Query:    72 ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
               +S+L           PEYR+ +EFQSHEPEFDYLKSLEIEEKIN+++WC   N + F+
Sbjct:    60 SKKSKL-----------PEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFL 108

Query:   132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
             L+TNDKTIKLWKV ++K+K++         S   +L +     N  +P    + Y+    
Sbjct:   109 LTTNDKTIKLWKVYEKKIKQVSTSATTTGPSYNGSLASN----NTRSPSHTTYIYNSSGA 164

Query:   192 ENMATKIANVGNS-----------------VHARCQKVYPHAHDFXXXXXXXXXDCETFV 234
              NM   + N  N+                 V A  +K++ +AH +         D ET++
Sbjct:   165 HNMNNNMNNSNNNNNLNNFKIPKLTTRETVVTATPRKIFQNAHAYHINSISLNSDGETYI 224

Query:   235 SADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294
             S+DDLRI+LWNL I+ +CFN+VD+KP+NM+DLTEVITSAEFHP  CN+  YSSS+G ++L
Sbjct:   225 SSDDLRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKL 284

Query:   295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 354
              D+R SALCD+ A++  +  E   +KSFF+EII+SISDIKF+ DG+++LSRD++ LKLWD
Sbjct:   285 GDLRSSALCDNHAKVFEEY-EDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWD 343

Query:   355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414
             I M++ PV T +IH++L+PKLCDLY ND IFDKFEC+++ DG    TGSY N L I+   
Sbjct:   344 INMENKPVKTIQIHDYLKPKLCDLYENDCIFDKFECTLNHDGTQMLTGSYHNYLHIYDRN 403

Query:   415 VGSAGGITVEAGKNENR 431
               S   + +EA K   +
Sbjct:   404 --SKQDVCLEASKQATK 418

GO:0005615 "extracellular space" evidence=IDA

GO:0005829 "cytosol" evidence=IEA;IDA

GO:0005813 "centrosome" evidence=IDA

GO:0017018 "myosin phosphatase activity" evidence=IDA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0031034 "myosin filament assembly" evidence=IDA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;IDA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

CGD|CAL0004658 orf19.1468 [Candida albicans (taxid:5476)]

 Score = 621 (223.7 bits), Expect = 1.3e-99, Sum P(3) = 1.3e-99
 Identities = 113/215 (52%), Positives = 154/215 (71%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             + A+ +K+Y +AH +         D ET++SADDLRINLWNL I+DQ FNIVD+KP+NM+
Sbjct:   159 ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLGIADQSFNIVDIKPANME 218

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVITSAEFHP  CNL  YSSS+G ++L DMR ++LCD  A+I  +  +   S +FFT
Sbjct:   219 ELTEVITSAEFHPSQCNLFMYSSSKGTIKLSDMRSNSLCDSHAKIFEEYLDP-SSHNFFT 277

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EI +SISD+KF++DG+++ SRDYM +K+WD+ M++ P+ T  +HEHLR +LCD Y ND+I
Sbjct:   278 EITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPLKTIDVHEHLRERLCDTYENDAI 337

Query:   385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 419
             FDKFE    GD     TGSY+N   I+ + V   G
Sbjct:   338 FDKFEVQFGGDNKSVMTGSYNNQFVIYPNAVNKGG 372

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0000078 "cell shape checkpoint" evidence=IEA

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IEA

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0001100 "negative regulation of exit from mitosis" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IEA

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

ASPGD|ASPL0000046009 AN1545 [Emericella nidulans (taxid:162425)]

 Score = 842 (301.5 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
 Identities = 167/342 (48%), Positives = 229/342 (66%)

Query:    90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV 149
             EY++ TEFQSHEPEFDYLKSLEIEEKIN+++WC   N S F+LSTNDKTIKLWKV D+ +
Sbjct:    66 EYKFHTEFQSHEPEFDYLKSLEIEEKINKIKWCRRQNASHFLLSTNDKTIKLWKVFDKSL 125

Query:   150 KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS---VH 206
             K + E +    +S+E T       +     P       + + ++ A K+  + +    V 
Sbjct:   126 KVVAENN----LSTELT----PGGVGGGGAP---RAPRVSFKDSSALKLPRMTHHDTVVA 174

Query:   207 ARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL 266
             A  ++ Y +AH +         D ETF+S+DDLR+NLWNL I DQ FNIVD+KP+NM++L
Sbjct:   175 AVPRRTYANAHAYHINSISVNSDGETFISSDDLRVNLWNLNIQDQSFNIVDIKPANMEEL 234

Query:   267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326
             TEVIT+AEFHP  CN   Y+SS+G ++L DMRQ ALCD   ++  +  E   S+SFF+EI
Sbjct:   235 TEVITAAEFHPTSCNWFMYASSKGTIKLADMRQRALCDTHHKLF-EQEEDASSRSFFSEI 293

Query:   327 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 386
             I+SISD++F++DG++++SRDY+ +K+WD+ M+  PV T  IHEHLRP+LCD Y NDSIFD
Sbjct:   294 ISSISDVRFSHDGRYIVSRDYLTVKIWDVNMERQPVKTIPIHEHLRPRLCDTYENDSIFD 353

Query:   387 KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428
             KFE   SGD  +  TGSY+N   I+         I ++A K+
Sbjct:   354 KFEVVFSGDAENVMTGSYNNNFMIYPTDPAKETEIVLQADKS 395

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IEA

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IEA

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

UNIPROTKB|Q6DIY3 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 646 (232.5 bits), Expect = 1.6e-94, Sum P(2) = 1.6e-94
 Identities = 120/236 (50%), Positives = 170/236 (72%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   164 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 223

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   224 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDRHSKFFEEP-EDPSSRSFFS 282

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EII+SISD+KF+N G+++++RDY+++K+WD+ M+S PV T+++HE+LR KLC LY ND I
Sbjct:   283 EIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCI 342

Query:   385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR
Sbjct:   343 FDKFECCWNGSDSAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR 395

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

WB|WBGene00006352 sur-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 653 (234.9 bits), Expect = 1.8e-93, Sum P(2) = 1.8e-93
 Identities = 128/248 (51%), Positives = 171/248 (68%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++VY +AH +         D ETF+SADDLR+NLWNLEI+++ FNIVD+KP+NM+
Sbjct:   204 VEASPRRVYGNAHTYHVNSISVNSDQETFLSADDLRVNLWNLEITNESFNIVDIKPANME 263

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP  CN   YSSS+G +RL DMR  ALCD  A+I  +  E   S+SFF+
Sbjct:   264 ELTEVITAAEFHPTQCNWFVYSSSKGSIRLCDMRDRALCDAYAKIFEEP-EDPQSRSFFS 322

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EIIAS+SD+KF+++G++LL+RDY+ +K+WD+ M+S PV T+ +H +LR KLC LY NDSI
Sbjct:   323 EIIASVSDVKFSHNGRYLLTRDYLTVKVWDLNMESQPVETYPVHNYLRTKLCALYENDSI 382

Query:   385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ--AAPRAR 442
             FDKFEC  SGD  H  TGSY NL R ++ G  +    T EA   E    +      P A+
Sbjct:   383 FDKFECDWSGDDKHILTGSYHNLFRSYARG-NNQDAKTWEARPQEPHSQLRSRFVVPSAK 441

Query:   443 RSSLSNLT 450
             R   +NL+
Sbjct:   442 RKR-NNLS 448

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI;IMP

GO:0051301 "cell division" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0040026 "positive regulation of vulval development" evidence=IGI;IMP

MGI|MGI:1289252 Ppp2r2d "protein phosphatase 2, regulatory subunit B, delta isoform" [Mus musculus (taxid:10090)]

 Score = 640 (230.4 bits), Expect = 4.8e-93, Sum P(2) = 4.8e-93
 Identities = 119/236 (50%), Positives = 167/236 (70%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   170 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 229

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP  CN+  YSSS+G +RL DMR SALCD  A+   +  E   S+SFF+
Sbjct:   230 ELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDRHAKFFEEP-EDPSSRSFFS 288

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EII+SISD+KF++ G+++++RDY+++K+WD+ M+  PV T ++HE+LR KLC LY ND I
Sbjct:   289 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEGRPVETHQVHEYLRSKLCSLYENDCI 348

Query:   385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440
             FDKFEC  +G      TGSY+N  R+F     +   +T+EA + EN KP     PR
Sbjct:   349 FDKFECCWNGSDSAIMTGSYNNFFRMFDRN--TRRDVTLEASR-ENSKPRASLKPR 401

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|F1NNN2 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 636 (228.9 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
 Identities = 118/236 (50%), Positives = 170/236 (72%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   167 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 226

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   227 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 285

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct:   286 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 345

Query:   385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR
Sbjct:   346 FDKFECCWNGSDGAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR 398

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|F1NS69 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 636 (228.9 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
 Identities = 118/236 (50%), Positives = 170/236 (72%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   168 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 227

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   228 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 286

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct:   287 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 346

Query:   385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR
Sbjct:   347 FDKFECCWNGSDGAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR 399

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|Q5ZIY5 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 636 (228.9 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
 Identities = 118/236 (50%), Positives = 170/236 (72%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   168 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 227

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   228 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 286

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
             EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct:   287 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 346

Query:   385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR
Sbjct:   347 FDKFECCWNGSDGAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR 399

GO:0007165 "signal transduction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0E2P1	2ABB_ORYSJ	No assigned EC number	0.5738	0.9409	0.8190	yes	no
Q39247	2ABB_ARATH	No assigned EC number	0.6061	0.9518	0.8682	yes	no
Q54Q99	PH2AB_DICDI	No assigned EC number	0.4801	0.8687	0.8219	yes	no
Q6DIY3	2ABD_XENTR	No assigned EC number	0.4520	0.8249	0.8434	yes	no
P36876	2ABA_RAT	No assigned EC number	0.4568	0.8446	0.8635	yes	no
Q29090	2ABA_PIG	No assigned EC number	0.4626	0.8183	0.8779	yes	no
Q12702	2ABA_SCHPO	No assigned EC number	0.4932	0.8533	0.8423	yes	no
P63151	2ABA_HUMAN	No assigned EC number	0.4568	0.8446	0.8635	yes	no
P63150	2ABA_RABIT	No assigned EC number	0.4568	0.8446	0.8635	yes	no
Q6NY64	2ABD_DANRE	No assigned EC number	0.4406	0.8249	0.8434	yes	no
A2X2K3	2ABB_ORYSI	No assigned EC number	0.5738	0.9409	0.8190	N/A	no
Q6P1F6	2ABA_MOUSE	No assigned EC number	0.4568	0.8446	0.8635	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	457
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	1e-123
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.003

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score =  367 bits (943), Expect = e-123
 Identities = 188/439 (42%), Positives = 255/439 (58%), Gaps = 53/439 (12%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
             K  Q FG++       + D ++A+EFD+TG YLA GD+GGRV+LFE            
Sbjct: 7   ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFE------------ 54

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
            R +             EY++ TEFQSHE EFDYLKSLEIEEKIN + W      + F+L
Sbjct: 55  -REKSY---------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192
           STNDKTIKLWK+ ++ +K          V +EN L    +            G      E
Sbjct: 105 STNDKTIKLWKIYEKNLK----------VVAENNLSDSFHSPMG--------GPLTSTKE 146

Query: 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 252
            +  +++     + A+  +VY +AH ++INSIS NSD ET +SADDLRINLWNLEI D  
Sbjct: 147 LLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGS 206

Query: 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312
           FNIVD+KP NM++LTEVITSAEFHP  CN+  YSSS+G ++L D+RQSALCD+S ++   
Sbjct: 207 FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL 266

Query: 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLR 372
                    FF EI++SISD KF+++G+++LSRDY+ +K+WD+ M   P+ T  +H  L 
Sbjct: 267 -TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM 325

Query: 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 432
            +L D+Y ND+IFDKFE S SGD  H  +GSYSN   I+          T  +G  +   
Sbjct: 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP---------TDSSGFKDVGH 376

Query: 433 PILQA---APRARRSSLSN 448
            +  A   A   +    +N
Sbjct: 377 VVNLADGSAEDFKVKCETN 395

Length = 460

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 75/390 (19%), Positives = 134/390 (34%), Gaps = 120/390 (30%)

Query: 33  DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92
             V+ + F   G  LA G   G + +++   G                            
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---------------------------E 42

Query: 93  YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI 152
                + H               +  V   A  +G+     ++DKTI+LW +  +  + +
Sbjct: 43  LLRTLKGHT------------GPVRDVAASA--DGTYLASGSSDKTIRLWDL--ETGECV 86

Query: 153 KEM-DHFPFVSS-----ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 206
           + +  H  +VSS     +  +L+  +                    +   K+ +V     
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSR-------------------DKTIKVWDVET--- 124

Query: 207 ARCQKVYPHAHDFNINSISNNSDCETFV--SADDLRINLWNLEISDQCFNIVDMKPSNMD 264
            +C        D+ +NS++ + D  TFV  S+ D  I LW+L  + +C          + 
Sbjct: 125 GKCLTTLRGHTDW-VNSVAFSPD-GTFVASSSQDGTIKLWDLR-TGKCVA-------TLT 174

Query: 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             T  + S  F P    LL+ SSS G ++L D+                 +  G+     
Sbjct: 175 GHTGEVNSVAFSPDGEKLLS-SSSDGTIKLWDLS--------------TGKCLGTLRGHE 219

Query: 325 EIIASISDIKFANDGQHLLS--RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND 382
             + S++   F+ DG  L S   D   +++WD+R     V T   H +            
Sbjct: 220 NGVNSVA---FSPDGYLLASGSEDG-TIRVWDLRTGE-CVQTLSGHTN------------ 262

Query: 383 SIFDKFECSVSGDGLHFATGSYSNLLRIFS 412
           S+      + S DG   A+GS    +RI+ 
Sbjct: 263 SVTS---LAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 70/346 (20%), Positives = 122/346 (35%), Gaps = 59/346 (17%)

Query: 71  HISRSELEKQMDFTSTS-HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSM 129
             S + L      +S S        ++     P+   L     E+ I  + +  +P+G +
Sbjct: 22  GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAF--SPDGEL 79

Query: 130 FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189
            +  ++D TIKLW + D   K IK ++     S     L+  +  +     S   G    
Sbjct: 80  LLSGSSDGTIKLWDL-DNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138

Query: 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE 247
           W  +   K+                  H  ++ S++ + D +   S    D  I LW+L 
Sbjct: 139 WDLSTPGKLIRTLE------------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307
                        S +   T+ ++S  F P    L+A  SS G +RL D+    L     
Sbjct: 187 TGKPL--------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL---- 234

Query: 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPVATFK 366
                        +      + +S   F+ DG  L S      ++LWD+R  S+ + T  
Sbjct: 235 -----------RSTLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281

Query: 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412
            H            + S+      + S DG   A+GS    +R++ 
Sbjct: 282 GH------------SSSVLS---VAFSPDGKLLASGSSDGTVRLWD 312

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	457
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG0649	325	consensus WD40 repeat protein [General function pr	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG4227	609	consensus WD40 repeat protein [General function pr	99.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.81
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.79
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG4328	498	consensus WD40 protein [Function unknown]	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG1310	758	consensus WD40 repeat protein [General function pr	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.71
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
COG2319	466	FOG: WD40 repeat [General function prediction only	99.68
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
KOG2139	445	consensus WD40 repeat protein [General function pr	99.66
PRK11028	330	6-phosphogluconolactonase; Provisional	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.65
PRK04922	433	tolB translocation protein TolB; Provisional	99.65
KOG2321	703	consensus WD40 repeat protein [General function pr	99.64
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.64
PRK02889	427	tolB translocation protein TolB; Provisional	99.64
KOG4227	609	consensus WD40 repeat protein [General function pr	99.64
KOG0649	325	consensus WD40 repeat protein [General function pr	99.64
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.63
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.62
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.57
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
PRK04922	433	tolB translocation protein TolB; Provisional	99.57
KOG1188	376	consensus WD40 repeat protein [General function pr	99.56
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.53
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.53
PRK04792	448	tolB translocation protein TolB; Provisional	99.53
PRK05137	435	tolB translocation protein TolB; Provisional	99.52
KOG2139	445	consensus WD40 repeat protein [General function pr	99.51
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.49
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.49
PRK00178	430	tolB translocation protein TolB; Provisional	99.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.46
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.45
KOG2315	566	consensus Predicted translation initiation factor	99.44
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.42
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.41
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.4
PRK01029	428	tolB translocation protein TolB; Provisional	99.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.4
PRK00178	430	tolB translocation protein TolB; Provisional	99.38
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.38
PRK04792	448	tolB translocation protein TolB; Provisional	99.38
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.36
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.36
KOG2314	698	consensus Translation initiation factor 3, subunit	99.35
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.35
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.34
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.33
KOG4547	541	consensus WD40 repeat-containing protein [General	99.31
PRK01029	428	tolB translocation protein TolB; Provisional	99.29
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.29
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.29
KOG1334	559	consensus WD40 repeat protein [General function pr	99.28
KOG2315	566	consensus Predicted translation initiation factor	99.24
KOG4547	541	consensus WD40 repeat-containing protein [General	99.23
COG4946	668	Uncharacterized protein related to the periplasmic	99.21
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.2
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.16
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.14
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.13
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.13
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.11
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.1
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.09
COG4946	668	Uncharacterized protein related to the periplasmic	99.07
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
PRK04043	419	tolB translocation protein TolB; Provisional	99.02
KOG2695	425	consensus WD40 repeat protein [General function pr	99.02
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.02
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.01
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.99
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.99
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.97
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.97
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.95
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.9
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.9
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.88
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.87
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.87
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.84
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.79
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.78
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.78
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.76
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.75
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.74
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.71
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.7
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.68
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.6
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.59
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.59
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.58
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.57
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.55
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.54
KOG2314	698	consensus Translation initiation factor 3, subunit	98.53
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.46
KOG2695	425	consensus WD40 repeat protein [General function pr	98.45
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.44
KOG3621	726	consensus WD40 repeat-containing protein [General	98.42
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.38
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.34
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.3
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.24
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.24
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.15
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.15
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.1
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.08
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.06
PRK02888	635	nitrous-oxide reductase; Validated	98.05
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.01
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.0
KOG3621	726	consensus WD40 repeat-containing protein [General	97.99
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.98
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.97
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.96
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.92
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.89
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.86
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.85
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.79
PRK02888	635	nitrous-oxide reductase; Validated	97.78
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.78
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.76
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.75
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.75
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.67
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.64
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.61
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.59
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.57
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.55
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.52
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.43
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.41
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.34
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.34
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.29
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.27
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.23
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.19
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.18
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.13
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.13
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.13
COG3391	381	Uncharacterized conserved protein [Function unknow	97.11
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.07
KOG2395	644	consensus Protein involved in vacuole import and d	97.06
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.05
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.99
COG3391	381	Uncharacterized conserved protein [Function unknow	96.93
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.59
PRK13616	591	lipoprotein LpqB; Provisional	96.57
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.54
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.48
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.44
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.4
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.33
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.32
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.22
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.13
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.05
PRK13616	591	lipoprotein LpqB; Provisional	96.04
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.98
KOG2444	238	consensus WD40 repeat protein [General function pr	95.86
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.7
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.7
KOG2395	644	consensus Protein involved in vacuole import and d	95.61
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.61
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.33
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.29
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.29
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.25
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.19
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.09
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.05
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.99
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.88
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.8
COG5167	776	VID27 Protein involved in vacuole import and degra	94.74
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.7
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.69
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.65
KOG2444	238	consensus WD40 repeat protein [General function pr	94.62
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.46
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.34
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.26
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.2
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.15
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.84
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.63
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.55
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.51
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.33
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.28
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.83
PRK13684	334	Ycf48-like protein; Provisional	92.25
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.25
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.1
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	91.96
PRK13684	334	Ycf48-like protein; Provisional	91.92
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.85
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.53
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.38
KOG2247	615	consensus WD40 repeat-containing protein [General	90.32
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.12
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.93
PHA02713	557	hypothetical protein; Provisional	89.57
PHA02713	557	hypothetical protein; Provisional	89.38
COG4590	733	ABC-type uncharacterized transport system, permeas	89.33
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.09
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.8
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.29
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.73
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.87
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.59
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.48
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.43
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	85.36
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.94
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	84.93
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.52
KOG2247	615	consensus WD40 repeat-containing protein [General	84.23
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	84.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	83.97
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.93
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.84
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.39
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	82.57
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	82.2
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	81.32
PRK10115	686	protease 2; Provisional	81.14
PLN00033	398	photosystem II stability/assembly factor; Provisio	80.67

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-48  Score=326.04  Aligned_cols=321  Identities=16%  Similarity=0.176  Sum_probs=266.2

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      -+|.++|.|++|+|+|..||+|+.|.++++||+.+..                           +..+.++|.       
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT---------------------------p~~t~KgH~-------  157 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET---------------------------PLFTCKGHK-------  157 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC---------------------------cceeecCCc-------
Confidence            3499999999999999999999999999999998776                           446789999       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.|++|  +|||+.||+|+.||+|++||..+|+..-..-......|.+++|.+-+-..-+       ..+++ 
T Consensus       158 -----~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~-------r~las-  222 (480)
T KOG0271|consen  158 -----NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPC-------RRLAS-  222 (480)
T ss_pred             -----cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCc-------cceec-
Confidence                 88999999  8999999999999999999999887654443444556788888764321100       00111 


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                       -..++.++|||..   ..+++..+ .+|+.+|+|+.|--+| +|++| .|++|++|+.. .+.+.+.       +++|.
T Consensus       223 -~skDg~vrIWd~~---~~~~~~~l-sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~-dG~~~r~-------lkGHa  288 (480)
T KOG0271|consen  223 -SSKDGSVRIWDTK---LGTCVRTL-SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL-DGKLCRE-------LKGHA  288 (480)
T ss_pred             -ccCCCCEEEEEcc---CceEEEEe-ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc-chhHHHh-------hcccc
Confidence             1246799999985   34566666 8999999999997544 88888 99999999998 5766654       78999


Q ss_pred             CceEEEEEe-----------cCC------------------------ccEEEEEccCCeEEEEEccCCeeeccccccccc
Q 012721          268 EVITSAEFH-----------PIY------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (457)
Q Consensus       268 ~~i~~v~~~-----------p~~------------------------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~  312 (457)
                      ..|+.++.+           |.+                        +..|++|+.|.++.+|+....+.          
T Consensus       289 hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk----------  358 (480)
T KOG0271|consen  289 HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK----------  358 (480)
T ss_pred             hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc----------
Confidence            999999876           223                        13599999999999998765431          


Q ss_pred             cccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEE
Q 012721          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS  391 (457)
Q Consensus       313 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  391 (457)
                            ....+.+|..-|+.+.||||++|||+++ |..|++||.++ ++.+.++++|-..+               +.++
T Consensus       359 ------pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V---------------Yqva  416 (480)
T KOG0271|consen  359 ------PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV---------------YQVA  416 (480)
T ss_pred             ------chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee---------------EEEE
Confidence                  1223577889999999999999999998 59999999997 99999999999876               7999


Q ss_pred             EcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          392 VSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       392 ~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      |+.|.++|++|+.|.++++|++++. +...-+.||...|.++.|+|||.-.++|
T Consensus       417 wsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwspDG~rV~sg  469 (480)
T KOG0271|consen  417 WSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSPDGQRVASG  469 (480)
T ss_pred             eccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecCCCceeecC
Confidence            9999999999999999999999998 7888899999999999999999988883

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.7e-45  Score=313.91  Aligned_cols=280  Identities=20%  Similarity=0.294  Sum_probs=248.9

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .-+.+|..+.|++|++.||||+-+|.+++|+..+..                           .+.+|.||.        
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~---------------------------~~~~l~gH~--------  217 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---------------------------LLQTLRGHT--------  217 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc---------------------------eeEEEeccc--------
Confidence            357899999999999999999999999999998774                           567899999        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          +.|.++.|+|-.++..+++|+.||++++|++.+...+..                                     
T Consensus       218 ----~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~-------------------------------------  256 (459)
T KOG0272|consen  218 ----SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD-------------------------------------  256 (459)
T ss_pred             ----cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh-------------------------------------
Confidence                889999997643577899999999999999987643322                                     


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                             + .+|...|..++|+|+|++|+++ .|.+-++||+++..+.+.        .++|..
T Consensus       257 -----------------------l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~--------QEGHs~  304 (459)
T KOG0272|consen  257 -----------------------L-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL--------QEGHSK  304 (459)
T ss_pred             -----------------------h-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHh--------hccccc
Confidence                                   1 6899999999999999999999 999999999995444432        589999


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~  347 (457)
                      .|.+++|+||| .++++|+.|..-+|||++++..+    ..             +.+|...|.+|.|+|+|..||+|+ |
T Consensus       305 ~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----m~-------------L~gH~k~I~~V~fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  305 GVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----MF-------------LAGHIKEILSVAFSPNGYHLATGSSD  366 (459)
T ss_pred             ccceeEecCCC-ceeeccCccchhheeecccCcEE----EE-------------ecccccceeeEeECCCceEEeecCCC
Confidence            99999999999 99999999999999999999743    22             356889999999999999999986 5


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      ++++|||+++ .+++.++.+|.+.+               +.+.|+| .|.+|+|++.|++++||.-.+. .+...+.||
T Consensus       367 nt~kVWDLR~-r~~ly~ipAH~nlV---------------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGH  429 (459)
T KOG0272|consen  367 NTCKVWDLRM-RSELYTIPAHSNLV---------------SQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAGH  429 (459)
T ss_pred             CcEEEeeecc-cccceecccccchh---------------hheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcCC
Confidence            9999999997 77799999999987               6899999 6899999999999999999988 889999999


Q ss_pred             CCcceeeeeccCCcceeccccccccccc
Q 012721          427 KNENRKPILQAAPRARRSSLSNLTRGLY  454 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~  454 (457)
                      .+.|-++..+|++....+  ++.+|..|
T Consensus       430 e~kV~s~Dis~d~~~i~t--~s~DRT~K  455 (459)
T KOG0272|consen  430 EGKVISLDISPDSQAIAT--SSFDRTIK  455 (459)
T ss_pred             ccceEEEEeccCCceEEE--eccCceee
Confidence            999999999999999998  88888765

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=1e-43  Score=295.63  Aligned_cols=370  Identities=55%  Similarity=0.888  Sum_probs=315.8

Q ss_pred             cccccchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhccccccc
Q 012721            7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (457)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (457)
                      .......|++.|+++..     ++..+-|.++.|..+|.+||||+.+|.|.++.-+....                    
T Consensus         5 ~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--------------------   59 (433)
T KOG1354|consen    5 GKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK--------------------   59 (433)
T ss_pred             Ccchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc--------------------
Confidence            34567789999998863     55678999999999999999999999999998654432                    


Q ss_pred             CCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeee
Q 012721           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  166 (457)
Q Consensus        87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  166 (457)
                        .+|.+...++.|++||+|+++++.+.+|+.+.|++..+...++..+.|.+|++|.+........ ......       
T Consensus        60 --~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~-~~~~~~-------  129 (433)
T KOG1354|consen   60 --GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKE-GYNLPE-------  129 (433)
T ss_pred             --cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccc-cccccc-------
Confidence              2788999999999999999999999999999999766778899999999999999876543320 000000       


Q ss_pred             ccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEc
Q 012721          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNL  246 (457)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~  246 (457)
                         .+              +.+....-..+.+-..+......|.+++..+|.-.|++++++.|++.+++++|-.|.+|++
T Consensus       130 ---~~--------------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnl  192 (433)
T KOG1354|consen  130 ---EG--------------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNL  192 (433)
T ss_pred             ---cC--------------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccc
Confidence               00              0000011112233333444556788888889999999999999999999999999999999


Q ss_pred             CCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecc
Q 012721          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  326 (457)
                      +...++..+++++|..++.....|++..|+|..+++++.++..|+|++-|+|...+++.+.++++. ++.|..+.+|.+-
T Consensus       193 ei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffsei  271 (433)
T KOG1354|consen  193 EIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEI  271 (433)
T ss_pred             cccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHH
Confidence            999999999999999999999999999999998899999999999999999999999999999998 8889899999999


Q ss_pred             ccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          327 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       327 ~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                      ...|..+.|+++|+||++-+.-+|++||+.+..+++..+..|......+|.+|++|++|+.+.++|+.++.+++||+..+
T Consensus       272 IsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n  351 (433)
T KOG1354|consen  272 ISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN  351 (433)
T ss_pred             hhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccc
Confidence            99999999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEecCCCCceeeEEecCCCc
Q 012721          407 LLRIFSHGVGSAGGITVEAGKNE  429 (457)
Q Consensus       407 ~i~iw~~~~~~~~~~~~~~~~~~  429 (457)
                      .++++++..|.+...++++...+
T Consensus       352 ~frvf~~~~gsk~d~tl~asr~~  374 (433)
T KOG1354|consen  352 VFRVFNLARGSKEDFTLEASRKN  374 (433)
T ss_pred             eEEEecCCCCcceeecccccccC
Confidence            99999988887777777665544

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7e-42  Score=288.30  Aligned_cols=287  Identities=20%  Similarity=0.298  Sum_probs=237.4

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ....|...|.|++|+|||+.||+|+.||+|++||..+++.                          ....|.+|.     
T Consensus       152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--------------------------~g~~l~gH~-----  200 (480)
T KOG0271|consen  152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--------------------------IGRALRGHK-----  200 (480)
T ss_pred             eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--------------------------ccccccCcc-----
Confidence            4456999999999999999999999999999999998875                          456789999     


Q ss_pred             cccccccCcEEEEEEEe---cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          107 LKSLEIEEKINRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~---s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                             ..|++++|.|   .|...+|++++.||.|+|||+..+.++..+..+. ..|+|+.|--             ..
T Consensus       201 -------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT-~~VTCvrwGG-------------~g  259 (480)
T KOG0271|consen  201 -------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT-ASVTCVRWGG-------------EG  259 (480)
T ss_pred             -------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc-cceEEEEEcC-------------Cc
Confidence                   8999999976   3556799999999999999999888776655433 2355554421             11


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeC-----------CCC----------------------
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-----------SDC----------------------  230 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----------~~~----------------------  230 (457)
                      +++++.  .+..|++|+...   +.+.+.+ .+|...|+.++.+           |.+                      
T Consensus       260 liySgS--~DrtIkvw~a~d---G~~~r~l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~  333 (480)
T KOG0271|consen  260 LIYSGS--QDRTIKVWRALD---GKLCREL-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK  333 (480)
T ss_pred             eEEecC--CCceEEEEEccc---hhHHHhh-cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence            122221  356899999863   5677777 8999999999877           222                      


Q ss_pred             ---CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccc
Q 012721          231 ---ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS  306 (457)
Q Consensus       231 ---~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~  306 (457)
                         +.|++| +|.++.+|+.....+++.       .+.+|...|..+.|+||+ .++|+++.|..|++||.++++..   
T Consensus       334 ~~~erlVSgsDd~tlflW~p~~~kkpi~-------rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~l---  402 (480)
T KOG0271|consen  334 DSGERLVSGSDDFTLFLWNPFKSKKPIT-------RMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFL---  402 (480)
T ss_pred             cCcceeEEecCCceEEEecccccccchh-------hhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchh---
Confidence               359999 999999999875555553       378999999999999999 99999999999999999998543   


Q ss_pred             cccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCcc
Q 012721          307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF  385 (457)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (457)
                       ..             |.+|-..|+.++|+.|.++|++|+ |.++++||+++ .++...+.+|...+             
T Consensus       403 -as-------------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t-kKl~~DLpGh~DEV-------------  454 (480)
T KOG0271|consen  403 -AS-------------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT-KKLKQDLPGHADEV-------------  454 (480)
T ss_pred             -hh-------------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeee-eeecccCCCCCceE-------------
Confidence             22             566889999999999999999998 59999999997 88888899999876             


Q ss_pred             ccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          386 DKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       386 ~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                        +++.|+|||..+++|+.|..+++|.
T Consensus       455 --f~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  455 --FAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             --EEEEecCCCceeecCCCceEEEeec
Confidence              7999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-40  Score=284.66  Aligned_cols=242  Identities=21%  Similarity=0.335  Sum_probs=216.0

Q ss_pred             CccccCCceEEEEECCC--CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           27 EELQDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~--~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      ....|++.|.++.|+|.  +.-||||+.||++++|++++..                           .+..+.+|.   
T Consensus       212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~---------------------------~l~~l~gH~---  261 (459)
T KOG0272|consen  212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET---------------------------PLQDLEGHL---  261 (459)
T ss_pred             EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc---------------------------chhhhhcch---
Confidence            44569999999999996  6789999999999999998765                           456889999   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                               ..|..++|  +|+|++|+|++.|.+-++||++++.....                                
T Consensus       262 ---------~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~~tk~ElL~--------------------------------  298 (459)
T KOG0272|consen  262 ---------ARVSRVAF--HPSGKFLGTASFDSTWRLWDLETKSELLL--------------------------------  298 (459)
T ss_pred             ---------hhheeeee--cCCCceeeecccccchhhcccccchhhHh--------------------------------
Confidence                     88999999  68999999999999999999998754332                                


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                                                   ..+|...|.+++|+|||.++++| .|..-+|||++ .+.++..       +
T Consensus       299 -----------------------------QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR-tgr~im~-------L  341 (459)
T KOG0272|consen  299 -----------------------------QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR-TGRCIMF-------L  341 (459)
T ss_pred             -----------------------------hcccccccceeEecCCCceeeccCccchhheeecc-cCcEEEE-------e
Confidence                                         16999999999999999999999 99999999999 6777755       6


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeE
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHL  342 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l  342 (457)
                      .+|...|.+|+|+|+| ..||+|+.|++++|||++..+..    .+             +.+|..-|+.|+|+| .|.+|
T Consensus       342 ~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~l----y~-------------ipAH~nlVS~Vk~~p~~g~fL  403 (459)
T KOG0272|consen  342 AGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSEL----YT-------------IPAHSNLVSQVKYSPQEGYFL  403 (459)
T ss_pred             cccccceeeEeECCCc-eEEeecCCCCcEEEeeecccccc----ee-------------cccccchhhheEecccCCeEE
Confidence            8999999999999999 99999999999999999987542    22             356788999999999 68899


Q ss_pred             EEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          343 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       343 ~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      ++++. +++++|..+. ..+++++.+|++.+               .++++++|+.+|+|++.|+++++|.
T Consensus       404 ~TasyD~t~kiWs~~~-~~~~ksLaGHe~kV---------------~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  404 VTASYDNTVKIWSTRT-WSPLKSLAGHEGKV---------------ISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEcccCcceeeecCCC-cccchhhcCCccce---------------EEEEeccCCceEEEeccCceeeecc
Confidence            99885 9999999985 89999999999976               7999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.7e-38  Score=257.73  Aligned_cols=279  Identities=13%  Similarity=0.211  Sum_probs=233.5

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..+|.+.|+++.|++|.++|++++.||.+.|||.-+..+.                           ..+.-..      
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------------------haipl~s------   97 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---------------------------HAIPLPS------   97 (343)
T ss_pred             ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce---------------------------eEEecCc------
Confidence            4469999999999999999999999999999998766542                           2222233      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ..|...+|  +|+|+++++|+.|+...||++.+.+..-.                                   
T Consensus        98 ------~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~-----------------------------------  134 (343)
T KOG0286|consen   98 ------SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGN-----------------------------------  134 (343)
T ss_pred             ------eeEEEEEE--CCCCCeEEecCcCceeEEEeccccccccc-----------------------------------
Confidence                  67999999  78999999999999999999885421100                                   


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                         .+..+. +.+|.+.+.|+.|-+|+ .|+++ .|.++.+||++ .++..+.       +.+|
T Consensus       135 -------------------~~v~r~-l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie-~g~~~~~-------f~GH  185 (343)
T KOG0286|consen  135 -------------------VRVSRE-LAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIE-TGQQTQV-------FHGH  185 (343)
T ss_pred             -------------------ceeeee-ecCccceeEEEEEcCCC-ceEecCCCceEEEEEcc-cceEEEE-------ecCC
Confidence                               011111 27999999999998755 56666 99999999999 6766655       7899


Q ss_pred             CCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          267 TEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       267 ~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      .+.|.+++++| ++ +.+++|+-|+..+|||+|.+...    +             .|.+|.+.|++++|.|+|.-+++|
T Consensus       186 ~gDV~slsl~p~~~-ntFvSg~cD~~aklWD~R~~~c~----q-------------tF~ghesDINsv~ffP~G~afatG  247 (343)
T KOG0286|consen  186 TGDVMSLSLSPSDG-NTFVSGGCDKSAKLWDVRSGQCV----Q-------------TFEGHESDINSVRFFPSGDAFATG  247 (343)
T ss_pred             cccEEEEecCCCCC-CeEEecccccceeeeeccCccee----E-------------eecccccccceEEEccCCCeeeec
Confidence            99999999999 66 99999999999999999997533    3             356688999999999999999999


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      +| ++.++||++. .+.+..+. |+.            .+++|++++||..|++|++|-.|.++.+||.-.+ +....+.
T Consensus       248 SDD~tcRlyDlRa-D~~~a~ys-~~~------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~  312 (343)
T KOG0286|consen  248 SDDATCRLYDLRA-DQELAVYS-HDS------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLA  312 (343)
T ss_pred             CCCceeEEEeecC-CcEEeeec-cCc------------ccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEee
Confidence            87 9999999996 77777776 333            2345689999999999999999999999999888 6788899


Q ss_pred             cCCCcceeeeeccCCcceec
Q 012721          425 AGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       425 ~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +|...|.++..+|||.+..+
T Consensus       313 GHeNRvScl~~s~DG~av~T  332 (343)
T KOG0286|consen  313 GHENRVSCLGVSPDGMAVAT  332 (343)
T ss_pred             ccCCeeEEEEECCCCcEEEe
Confidence            99999999999999999988

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-38  Score=253.66  Aligned_cols=300  Identities=16%  Similarity=0.205  Sum_probs=238.4

Q ss_pred             CCccccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           26 DEELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        26 ~~~~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      +....|++.|+.++..+. .+.|++++.|.++.+|++......                      .....+.|.||+   
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------~G~~~r~~~GHs---   63 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------YGVPVRRLTGHS---   63 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------cCceeeeeeccc---
Confidence            345569999999999986 578999999999999999876542                      445678899999   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                               ..|..+..  +++|++.++++.|+++++||+.+++..+.+..+. ..|.+++|++.+..++....      
T Consensus        64 ---------H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~-~dVlsva~s~dn~qivSGSr------  125 (315)
T KOG0279|consen   64 ---------HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRRFVGHT-KDVLSVAFSTDNRQIVSGSR------  125 (315)
T ss_pred             ---------eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEEEEecC-CceEEEEecCCCceeecCCC------
Confidence                     67999999  7999999999999999999999997666655443 45899999988887777665      


Q ss_pred             ccCCccccccceEEEeccCccccccceeecc-CCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPH-AHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                              +..+++|+.-.    .|..+... .+.+.|+|+.|+|+  ..+|+++ .|++|++||++ +-+...      
T Consensus       126 --------DkTiklwnt~g----~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~------  186 (315)
T KOG0279|consen  126 --------DKTIKLWNTLG----VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRT------  186 (315)
T ss_pred             --------cceeeeeeecc----cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhh------
Confidence                    67899999853    34433322 23788999999997  6788888 99999999999 444333      


Q ss_pred             CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                       .+.+|++.++.++++||| .++++|+.||.+.+||++.++.+    ..++              |...|.+++|+|+.-
T Consensus       187 -~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~--------------a~~~v~sl~fspnry  246 (315)
T KOG0279|consen  187 -TFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLE--------------AFDIVNSLCFSPNRY  246 (315)
T ss_pred             -ccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----Eecc--------------CCCeEeeEEecCCce
Confidence             378899999999999999 99999999999999999998653    3333              357899999999998


Q ss_pred             eEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          341 HLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       341 ~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      .|+.+.+..|+|||+++ +..+..++.......  ...-++.|    ++++|++||..|++|-.|+.|++|.+.
T Consensus       247 wL~~at~~sIkIwdl~~-~~~v~~l~~d~~g~s--~~~~~~~c----lslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  247 WLCAATATSIKIWDLES-KAVVEELKLDGIGPS--SKAGDPIC----LSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eEeeccCCceEEEeccc-hhhhhhccccccccc--cccCCcEE----EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            88888888899999986 666666543221110  00000011    689999999999999999999999975

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5e-38  Score=257.17  Aligned_cols=286  Identities=17%  Similarity=0.262  Sum_probs=237.9

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|+.+.|+|+|.+||+|+.|..|.+|++....+                          ....+++|.       
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--------------------------N~~~lkgHs-------   90 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--------------------------NFWVLKGHS-------   90 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--------------------------ceeeecccc-------
Confidence            34899999999999999999999999999999876654                          456678999       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ++|..+.|  ..+++.+++++.|++|+.||+++|+....                                    
T Consensus        91 -----gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk------------------------------------  127 (338)
T KOG0265|consen   91 -----GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRK------------------------------------  127 (338)
T ss_pred             -----ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeeh------------------------------------
Confidence                 99999999  78999999999999999999999876532                                    


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                              + ++|..-|+++.-+.-|..++ ++ .|+++++||++ .+.+++++        ..
T Consensus       128 ------------------------~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t~--------~~  173 (338)
T KOG0265|consen  128 ------------------------H-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-KKEAIKTF--------EN  173 (338)
T ss_pred             ------------------------h-ccccceeeecCccccCCeEEEecCCCceEEEEeec-ccchhhcc--------cc
Confidence                                    1 68888899988665565555 56 99999999999 66666653        23


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ...++++.|...+ ..+.+|+-|+.|++||++.+...    .+             +.||...|+.+..+|+|.++.+-+
T Consensus       174 kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~----~~-------------lsGh~DtIt~lsls~~gs~llsns  235 (338)
T KOG0265|consen  174 KYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGL----YT-------------LSGHADTITGLSLSRYGSFLLSNS  235 (338)
T ss_pred             ceeEEEEEecccc-cceeeccccCceeeeccccCcce----EE-------------eecccCceeeEEeccCCCcccccc
Confidence            4679999999998 89999999999999999886533    22             456889999999999999999976


Q ss_pred             -cCcEEEEeccC---CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721          347 -YMNLKLWDIRM---DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  422 (457)
Q Consensus       347 -~~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~  422 (457)
                       |.++++||++.   ..+++..+.+|.......           ...++|+|++.++.+|+.|..+++||..+. ..+..
T Consensus       236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfekn-----------lL~cswsp~~~~i~ags~dr~vyvwd~~~r-~~lyk  303 (338)
T KOG0265|consen  236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN-----------LLKCSWSPNGTKITAGSADRFVYVWDTTSR-RILYK  303 (338)
T ss_pred             ccceEEEEEecccCCCCceEEEeecchhhhhhh-----------cceeeccCCCCccccccccceEEEeecccc-cEEEE
Confidence             59999999975   234477777766543211           158999999999999999999999998876 78999


Q ss_pred             EecCCCcceeeeeccCCcceeccccccccccccC
Q 012721          423 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ  456 (457)
Q Consensus       423 ~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~  456 (457)
                      +.||.+.|+++.|||..|...+  ..+++..+-|
T Consensus       304 lpGh~gsvn~~~Fhp~e~iils--~~sdk~i~lg  335 (338)
T KOG0265|consen  304 LPGHYGSVNEVDFHPTEPIILS--CSSDKTIYLG  335 (338)
T ss_pred             cCCcceeEEEeeecCCCcEEEE--eccCceeEee
Confidence            9999999999999999999988  6666666543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.8e-37  Score=245.49  Aligned_cols=271  Identities=17%  Similarity=0.260  Sum_probs=226.3

Q ss_pred             cccC-CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           29 LQDV-DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~-~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ++|. ..|..+...|+++.||+|+.. .|++||+.+....                         ++.++.+|.      
T Consensus        36 iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~-------------------------Pv~t~e~h~------   83 (311)
T KOG0315|consen   36 IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN-------------------------PVATFEGHT------   83 (311)
T ss_pred             EecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC-------------------------ceeEEeccC------
Confidence            4564 579999999999999999875 6999999988753                         778999998      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ..|.+|.|  ..+|..+++|++||+++|||++.-.+.+.                                   
T Consensus        84 ------kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR~-----------------------------------  120 (311)
T KOG0315|consen   84 ------KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQRN-----------------------------------  120 (311)
T ss_pred             ------CceEEEEE--eecCeEEEecCCCceEEEEeccCcccchh-----------------------------------
Confidence                  78999999  68999999999999999999987433322                                   


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                 ..|..+|+++..+|+...|++| .+|.|++||+. ...+...+      +.+-
T Consensus       121 ---------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~-~~~c~~~l------iPe~  166 (311)
T KOG0315|consen  121 ---------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG-ENSCTHEL------IPED  166 (311)
T ss_pred             ---------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEcc-CCcccccc------CCCC
Confidence                                       3567899999999999999999 99999999998 44333322      3445


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ...|.++...|+| .+++.+...|...+|++......    .       ...+...+..|++.+..+.+|||++|||+++
T Consensus       167 ~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~----s-------~l~P~~k~~ah~~~il~C~lSPd~k~lat~s  234 (311)
T KOG0315|consen  167 DTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTA----S-------ELEPVHKFQAHNGHILRCLLSPDVKYLATCS  234 (311)
T ss_pred             CcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCcc----c-------cceEhhheecccceEEEEEECCCCcEEEeec
Confidence            5789999999999 99999999999999999874221    1       1112334788999999999999999999876


Q ss_pred             -cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       347 -~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                       |.+++||+.+..-+....+.+|...+               ..++||.||.||++|+.|+.+++|++.++ +......+
T Consensus       235 sdktv~iwn~~~~~kle~~l~gh~rWv---------------Wdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~g  298 (311)
T KOG0315|consen  235 SDKTVKIWNTDDFFKLELVLTGHQRWV---------------WDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQG  298 (311)
T ss_pred             CCceEEEEecCCceeeEEEeecCCceE---------------EeeeeccCccEEEecCCCCceeecccccC-ceeeecCC
Confidence             59999999986436667788888776               79999999999999999999999999999 67788999


Q ss_pred             CCCcceeeeec
Q 012721          426 GKNENRKPILQ  436 (457)
Q Consensus       426 ~~~~v~~~~~~  436 (457)
                      |..+..+++.+
T Consensus       299 h~K~~vc~~ln  309 (311)
T KOG0315|consen  299 HHKAAVCVALN  309 (311)
T ss_pred             cccccEEEEee
Confidence            99988888765

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.6e-36  Score=263.18  Aligned_cols=334  Identities=19%  Similarity=0.279  Sum_probs=250.3

Q ss_pred             cchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCc
Q 012721           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (457)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (457)
                      ..+++|+..+++        |..-|.|+.|+|||.++|+++.||+|.|||-.++++                        
T Consensus       177 GPPFKFk~s~r~--------HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~------------------------  224 (603)
T KOG0318|consen  177 GPPFKFKSSFRE--------HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK------------------------  224 (603)
T ss_pred             CCCeeeeecccc--------cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE------------------------
Confidence            445777777776        999999999999999999999999999999888874                        


Q ss_pred             cceeeeec---cCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCC---Cceeee
Q 012721           91 YRYKTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF---PFVSSE  164 (457)
Q Consensus        91 ~~~~~~~~---~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~---~~~~~~  164 (457)
                         +..|.   +|.            +.|.+++|  +||++.|++++.|.++++||+.+.++...+.+...   +.+-++
T Consensus       225 ---vg~l~~~~aHk------------GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l  287 (603)
T KOG0318|consen  225 ---VGELEDSDAHK------------GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL  287 (603)
T ss_pred             ---EEEecCCCCcc------------ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence               34455   666            99999999  79999999999999999999999988776654432   111111


Q ss_pred             eeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEE
Q 012721          165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL  243 (457)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~i  243 (457)
                       |.  ++.++...              .++.+.+++.+...   .++++ .+|...|+++..+|++++|++| .||.|.-
T Consensus       288 -Wq--kd~lItVS--------------l~G~in~ln~~d~~---~~~~i-~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~  346 (603)
T KOG0318|consen  288 -WQ--KDHLITVS--------------LSGTINYLNPSDPS---VLKVI-SGHNKSITALTVSPDGKTIYSGSYDGHINS  346 (603)
T ss_pred             -Ee--CCeEEEEE--------------cCcEEEEecccCCC---hhhee-cccccceeEEEEcCCCCEEEeeccCceEEE
Confidence             11  22222222              23455555554332   44544 8999999999999999999999 9999999


Q ss_pred             EEcCCCcce------------------------------eeeeecC---------------CCc----------------
Q 012721          244 WNLEISDQC------------------------------FNIVDMK---------------PSN----------------  262 (457)
Q Consensus       244 wd~~~~~~~------------------------------~~~~~~~---------------~~~----------------  262 (457)
                      |+.......                              ++.+..+               |..                
T Consensus       347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~  426 (603)
T KOG0318|consen  347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS  426 (603)
T ss_pred             EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence            998641100                              0001000               000                


Q ss_pred             ----cc--------CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccce
Q 012721          263 ----MD--------DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (457)
Q Consensus       263 ----~~--------~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  330 (457)
                          +.        .-.....+++++|++ ..++.|+.||.|++|.+....+..               ......|.++|
T Consensus       427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~e---------------e~~~~~h~a~i  490 (603)
T KOG0318|consen  427 DIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKE---------------EAKLLEHRAAI  490 (603)
T ss_pred             cEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccc---------------eeeeecccCCc
Confidence                00        011234678899999 999999999999999998865321               01134578999


Q ss_pred             EEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEE
Q 012721          331 SDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  409 (457)
Q Consensus       331 ~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~  409 (457)
                      ++++||||+.|||+++. +.+.+||..........+.-|...+               .+++|+|+..++|+|+-|-.|.
T Consensus       491 T~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI---------------~~~aWsP~n~~vATGSlDt~Vi  555 (603)
T KOG0318|consen  491 TDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI---------------NCVAWSPNNKLVATGSLDTNVI  555 (603)
T ss_pred             eEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE---------------EEEEeCCCceEEEeccccceEE
Confidence            99999999999999987 9999999986333344455577765               6999999999999999999999


Q ss_pred             EEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          410 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       410 iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      ||+++...+......+|...|+.+.|-.+..-..+|
T Consensus       556 iysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG  591 (603)
T KOG0318|consen  556 IYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSG  591 (603)
T ss_pred             EEEccChhhheEeccccccCceeEEEecCceEEecc
Confidence            999998877788888999999999998776555553

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.4e-37  Score=285.87  Aligned_cols=268  Identities=21%  Similarity=0.298  Sum_probs=218.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccc-hhhhhhcccccc--cCC-CccceeeeeccCCcccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHIS-RSELEKQMDFTS--TSH-PEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~-~~~~~~~~~~~h~~~~~~~  107 (457)
                      ...++|..|++|+.+||.|-.|..|++|.+...+..++.+.. ...+......+.  ..- .+.....++.||.      
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------  451 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------  451 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence            568999999999999999999999999999854432221111 111111111110  000 0122344578888      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ++|....|  +|+.++|+++|+|+++|+|.+.+......                                   
T Consensus       452 ------GPVyg~sF--sPd~rfLlScSED~svRLWsl~t~s~~V~-----------------------------------  488 (707)
T KOG0263|consen  452 ------GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDTWSCLVI-----------------------------------  488 (707)
T ss_pred             ------Cceeeeee--cccccceeeccCCcceeeeecccceeEEE-----------------------------------
Confidence                  99999999  78999999999999999999988654432                                   


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                               + .+|..+|+.+.|+|.|-+||++ .|++.++|... .....++       +.+|
T Consensus       489 -------------------------y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRi-------fagh  534 (707)
T KOG0263|consen  489 -------------------------Y-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRI-------FAGH  534 (707)
T ss_pred             -------------------------e-cCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhh-------hccc
Confidence                                     2 6899999999999999999999 99999999998 5556655       6899


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      .+.|.|+.|+|+. .++++||.|.+||+||+.++...    ++|             .||.++|.+++|||+|++|++|+
T Consensus       535 lsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~V----RiF-------------~GH~~~V~al~~Sp~Gr~LaSg~  596 (707)
T KOG0263|consen  535 LSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSV----RIF-------------TGHKGPVTALAFSPCGRYLASGD  596 (707)
T ss_pred             ccccceEEECCcc-cccccCCCCceEEEEEcCCCcEE----EEe-------------cCCCCceEEEEEcCCCceEeecc
Confidence            9999999999999 99999999999999999998543    444             55889999999999999999998


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      + +.|.+||+.. ++++..+.+|.+.+               .++.||.||..||+|+.|++|++||+...
T Consensus       597 ed~~I~iWDl~~-~~~v~~l~~Ht~ti---------------~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  597 EDGLIKIWDLAN-GSLVKQLKGHTGTI---------------YSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cCCcEEEEEcCC-CcchhhhhcccCce---------------eEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            6 9999999985 89999999997765               69999999999999999999999998654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-36  Score=255.60  Aligned_cols=272  Identities=16%  Similarity=0.222  Sum_probs=240.9

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .+|..+|+.+-|+|+-.+++++++|++|++||..+++                           +...++||.       
T Consensus       105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~---------------------------~e~~LrGHt-------  150 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE---------------------------LERSLRGHT-------  150 (406)
T ss_pred             hccccceeeeeeccCceEEEEecCCceEEEEEccchh---------------------------hhhhhhccc-------
Confidence            4588999999999999999999999999999999876                           457899999       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           .+|.+|+|  +..|.++++++.|-.+++||..+.                                         
T Consensus       151 -----~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~-----------------------------------------  182 (406)
T KOG0295|consen  151 -----DSVFDISF--DASGKYLATCSSDLSAKLWDFDTF-----------------------------------------  182 (406)
T ss_pred             -----cceeEEEE--ecCccEEEecCCccchhheeHHHH-----------------------------------------
Confidence                 78999999  688999999999999999998763                                         


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                        .+|++.. .+|...|.++.|-|.|.+++++ .|.+|+.|++. .+.++.+       +.+|.
T Consensus       183 ------------------~~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t-------~~~h~  235 (406)
T KOG0295|consen  183 ------------------FRCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKT-------FPGHS  235 (406)
T ss_pred             ------------------HHHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEEe-------ccCch
Confidence                              1344433 7899999999999999999999 99999999999 7777766       78999


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC---------
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---------  338 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---------  338 (457)
                      +.+..+..+.|| .++++++.|.+|++|-+.+++..    ..             +.+|.-+|-+++|.|.         
T Consensus       236 ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----~~-------------lR~hEh~vEci~wap~~~~~~i~~a  297 (406)
T KOG0295|consen  236 EWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----AE-------------LREHEHPVECIAWAPESSYPSISEA  297 (406)
T ss_pred             HhEEEEEecCCe-eEEEecCCCceEEEEEeccchhh----hh-------------hhccccceEEEEecccccCcchhhc
Confidence            999999999999 99999999999999999887422    22             3456678888888763         


Q ss_pred             ------CCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721          339 ------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  411 (457)
Q Consensus       339 ------g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw  411 (457)
                            ++++++++ |++|++||+.+ +.++.++.+|.+.+               ..++|+|.|+||+++.+|+++++|
T Consensus       298 t~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gkyi~ScaDDktlrvw  361 (406)
T KOG0295|consen  298 TGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKYILSCADDKTLRVW  361 (406)
T ss_pred             cCCCCCccEEEeecccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeEEEEEecCCcEEEE
Confidence                  35888887 59999999987 89999999999987               689999999999999999999999


Q ss_pred             ecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          412 SHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      |++++ ++..++++|..-++++.|+-+.|...+
T Consensus       362 dl~~~-~cmk~~~ah~hfvt~lDfh~~~p~VvT  393 (406)
T KOG0295|consen  362 DLKNL-QCMKTLEAHEHFVTSLDFHKTAPYVVT  393 (406)
T ss_pred             Eeccc-eeeeccCCCcceeEEEecCCCCceEEe
Confidence            99999 889999999999999999999998877

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.6e-37  Score=264.10  Aligned_cols=277  Identities=19%  Similarity=0.304  Sum_probs=235.4

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...|..|.|.|+|+.|++|+..|.+.+|+...-                           .+...++.|+          
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------------nFEtilQaHD----------  138 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------------NFETILQAHD----------  138 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCcee---------------------------eHHHHhhhhc----------
Confidence            348999999999999999999999999997432                           3455678898          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        .+|.++.|  ++++..+++|+.+|.|++|+..-...+..                                       
T Consensus       139 --s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk~~---------------------------------------  175 (464)
T KOG0284|consen  139 --SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVKII---------------------------------------  175 (464)
T ss_pred             --ccceeEEE--ccCCCEEEEcCCCceEEecccchhhhHHh---------------------------------------
Confidence              89999999  78999999999999999999765432211                                       


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                            ...|...|++++|+|+...|++| +||+|+|||.....+.. +       +.+|...|
T Consensus       176 ----------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-v-------L~GHgwdV  225 (464)
T KOG0284|consen  176 ----------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-V-------LRGHGWDV  225 (464)
T ss_pred             ----------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-e-------eccCCCCc
Confidence                                  03455899999999999999999 99999999998433322 2       68999999


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCc
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  349 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~  349 (457)
                      .+++|+|.. .+|++|+.|..|++||.+++.++    ..             +.+|...|..+.|+|++.+|++++ |..
T Consensus       226 ksvdWHP~k-gLiasgskDnlVKlWDprSg~cl----~t-------------lh~HKntVl~~~f~~n~N~Llt~skD~~  287 (464)
T KOG0284|consen  226 KSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCL----AT-------------LHGHKNTVLAVKFNPNGNWLLTGSKDQS  287 (464)
T ss_pred             ceeccCCcc-ceeEEccCCceeEeecCCCcchh----hh-------------hhhccceEEEEEEcCCCCeeEEccCCce
Confidence            999999998 99999999999999999998654    22             345778999999999999999998 499


Q ss_pred             EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  428 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  428 (457)
                      ++++|+++ .+.+.++++|...+               +++.|+|- ..++.+|+.||.|..|.+...+.....-.+|..
T Consensus       288 ~kv~DiR~-mkEl~~~r~Hkkdv---------------~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~  351 (464)
T KOG0284|consen  288 CKVFDIRT-MKELFTYRGHKKDV---------------TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG  351 (464)
T ss_pred             EEEEehhH-hHHHHHhhcchhhh---------------eeeccccccccceeeccCCCceEEEeccccccccCCCccccc
Confidence            99999995 78899999999865               79999994 678889999999999999966566777789999


Q ss_pred             cceeeeeccCCcceeccccccccccc
Q 012721          429 ENRKPILQAAPRARRSSLSNLTRGLY  454 (457)
Q Consensus       429 ~v~~~~~~p~~~~~~~~~~~~~~~~~  454 (457)
                      .|++++|||-|...++  ++-+|..|
T Consensus       352 ~iwsl~~hPlGhil~t--gsnd~t~r  375 (464)
T KOG0284|consen  352 EIWSLAYHPLGHILAT--GSNDRTVR  375 (464)
T ss_pred             ceeeeeccccceeEee--cCCCccee
Confidence            9999999999999998  66666554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.5e-35  Score=255.19  Aligned_cols=278  Identities=17%  Similarity=0.317  Sum_probs=229.0

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .....|++++|+.+|.+||+|+.||.++||+..+..                            +.+|..|.        
T Consensus       233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----------------------------~~tl~~Hk--------  276 (524)
T KOG0273|consen  233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----------------------------ISTLGQHK--------  276 (524)
T ss_pred             CccCCcceEEecCCCCeEEEeecCcEEEEEecCchh----------------------------hhhhhccC--------
Confidence            346789999999999999999999999999987654                            35778888        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ++|.++.|  +..|++|++++.|+++.+||..++.......+...+ .-+                  +.+..+..
T Consensus       277 ----gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-~lD------------------VdW~~~~~  331 (524)
T KOG0273|consen  277 ----GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-ALD------------------VDWQSNDE  331 (524)
T ss_pred             ----CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-ccc------------------eEEecCce
Confidence                99999999  789999999999999999999999888776654322 011                  22223333


Q ss_pred             cc---cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          190 WT---ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       190 ~~---~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                      |+   .++.++++.+...   .+.+++ .+|.++|.++.|+|.+.+|+++ +|++++||.+. ...+..       .+.+
T Consensus       332 F~ts~td~~i~V~kv~~~---~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~-------~l~~  399 (524)
T KOG0273|consen  332 FATSSTDGCIHVCKVGED---RPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVH-------DLQA  399 (524)
T ss_pred             EeecCCCceEEEEEecCC---Ccceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcchh-------hhhh
Confidence            32   2446888877543   566666 7899999999999999999999 99999999987 454443       3788


Q ss_pred             CCCceEEEEEecCCc--------cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721          266 LTEVITSAEFHPIYC--------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~--------~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  337 (457)
                      |...|..+.|+|.|+        ..+++++.|++|++||+..+...    ..             |..|..+|++++|+|
T Consensus       400 Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~-------------f~kH~~pVysvafS~  462 (524)
T KOG0273|consen  400 HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HT-------------LMKHQEPVYSVAFSP  462 (524)
T ss_pred             hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----Ee-------------eccCCCceEEEEecC
Confidence            999999999999863        37899999999999999987543    22             456789999999999


Q ss_pred             CCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       338 ~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      +|+|+|+|+ ||.|.+|+.++ ++.++.+.+....                +.++|+.+|.+|..+-.|+.+++-|++
T Consensus       463 ~g~ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~I----------------fel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  463 NGRYLASGSLDGCVHIWSTKT-GKLVKSYQGTGGI----------------FELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCcEEEecCCCCeeEeccccc-hheeEeecCCCeE----------------EEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999998 59999999986 8888888876653                589999999999999999999999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.4e-35  Score=240.57  Aligned_cols=244  Identities=24%  Similarity=0.414  Sum_probs=211.3

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...|..++|+|.|+++|.|+-|+...||++.+.+..                     ...+..+++.+|.          
T Consensus        97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~---------------------g~~~v~r~l~gHt----------  145 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE---------------------GNVRVSRELAGHT----------  145 (343)
T ss_pred             ceeEEEEEECCCCCeEEecCcCceeEEEeccccccc---------------------ccceeeeeecCcc----------
Confidence            678999999999999999999999999999855321                     1223556799999          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        +-+.+..|.   +..+|+++|.|.+..+||+++++....+                                      
T Consensus       146 --gylScC~f~---dD~~ilT~SGD~TCalWDie~g~~~~~f--------------------------------------  182 (343)
T KOG0286|consen  146 --GYLSCCRFL---DDNHILTGSGDMTCALWDIETGQQTQVF--------------------------------------  182 (343)
T ss_pred             --ceeEEEEEc---CCCceEecCCCceEEEEEcccceEEEEe--------------------------------------
Confidence              779999994   4669999999999999999998765542                                      


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                             .+|.+.|.+++++| +++.+++| .|+..++||++ .+.+.+.       +.+|...
T Consensus       183 -----------------------~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R-~~~c~qt-------F~ghesD  231 (343)
T KOG0286|consen  183 -----------------------HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR-SGQCVQT-------FEGHESD  231 (343)
T ss_pred             -----------------------cCCcccEEEEecCCCCCCeEEecccccceeeeecc-CcceeEe-------ecccccc
Confidence                                   69999999999999 99999999 99999999999 6777776       7999999


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~  348 (457)
                      |.+++|.|+| .-|++|+.|++.++||+|..+..    .++..           ..-..+|++++||..|++|++|- |.
T Consensus       232 INsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~----a~ys~-----------~~~~~gitSv~FS~SGRlLfagy~d~  295 (343)
T KOG0286|consen  232 INSVRFFPSG-DAFATGSDDATCRLYDLRADQEL----AVYSH-----------DSIICGITSVAFSKSGRLLFAGYDDF  295 (343)
T ss_pred             cceEEEccCC-CeeeecCCCceeEEEeecCCcEE----eeecc-----------CcccCCceeEEEcccccEEEeeecCC
Confidence            9999999999 99999999999999999997654    44433           11246899999999999999974 59


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      ++.+||.-. ++.+..+.+|++.+               .++..+|||.-+++|+.|.+++||.
T Consensus       296 ~c~vWDtlk-~e~vg~L~GHeNRv---------------Scl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  296 TCNVWDTLK-GERVGVLAGHENRV---------------SCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ceeEeeccc-cceEEEeeccCCee---------------EEEEECCCCcEEEecchhHheeecC
Confidence            999999964 78888999999987               6899999999999999999999994

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=250.86  Aligned_cols=361  Identities=49%  Similarity=0.786  Sum_probs=297.1

Q ss_pred             cchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCc
Q 012721           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (457)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (457)
                      ...|+++|.|+.+.........+.|+++.|...|.|||+|...|.|.+|.-+...-               |       +
T Consensus         5 n~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~---------------c-------e   62 (460)
T COG5170           5 NEILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG---------------C-------E   62 (460)
T ss_pred             hhhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeecccccc---------------c-------c
Confidence            45699999999988888888899999999999999999999999999998654432               2       7


Q ss_pred             cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccc
Q 012721           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (457)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (457)
                      |++.++|++|+.||+|+++++.+..|+.+.|+....-..++..+.|++|++|.+.......+..-+...     +|..+.
T Consensus        63 ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~-----~~~~~~  137 (460)
T COG5170          63 YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSD-----SFHSPM  137 (460)
T ss_pred             hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccc-----cccccc
Confidence            889999999999999999999999999999984344567888899999999999876544332222111     111111


Q ss_pred             ccccccCCCCCceeccCCccccccceEEEecc---CccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcC
Q 012721          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVG---NSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE  247 (457)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~  247 (457)
                      +..+.                +...+++-.+.   ..-...+.+++...|.-.|++++++.|.+.+++++|-.|.+|+++
T Consensus       138 ~g~~~----------------s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~  201 (460)
T COG5170         138 GGPLT----------------STKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLE  201 (460)
T ss_pred             CCCcC----------------CHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeecccc
Confidence            11100                00011111111   111223344455789999999999999999999999999999999


Q ss_pred             CCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  327 (457)
                      ....+..+++++|..++.....|++..|+|..++.+..++..|.|++-|+|...+++...+++.. ...+.....+.+-.
T Consensus       202 i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eiv  280 (460)
T COG5170         202 IIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIV  280 (460)
T ss_pred             ccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHh
Confidence            88999999999999998889999999999988789999999999999999999888888788877 66677777788888


Q ss_pred             cceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc
Q 012721          328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  407 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  407 (457)
                      +.|..+.|+++|+||++.+.-+|++||.++...++.++..|......+++.|++|++|+.+.+.||.|...+++|+..+.
T Consensus       281 sSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NN  360 (460)
T COG5170         281 SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNN  360 (460)
T ss_pred             hhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccc
Confidence            99999999999999999999999999999989999999999999999999999999999999999999999999999998


Q ss_pred             EEEEecCC
Q 012721          408 LRIFSHGV  415 (457)
Q Consensus       408 i~iw~~~~  415 (457)
                      .-++-..+
T Consensus       361 fgiyp~~s  368 (460)
T COG5170         361 FGIYPTDS  368 (460)
T ss_pred             eeeecccc
Confidence            88888554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-35  Score=232.61  Aligned_cols=274  Identities=18%  Similarity=0.273  Sum_probs=233.3

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.++|.++.|+-||+|.++++.|.+|++|+...+.                           ++.++.+|.        
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------liktYsghG--------   59 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------LIKTYSGHG--------   59 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeecccccc---------------------------eeeeecCCC--------
Confidence            378999999999999999999999999999987665                           678899998        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..|..++.  +.|+..|++|+.|+.+.+||+.+|+..+.+                                    
T Consensus        60 ----~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~------------------------------------   97 (307)
T KOG0316|consen   60 ----HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRRF------------------------------------   97 (307)
T ss_pred             ----ceeeeccc--cccccccccCCCCceEEEEEcccCeeeeec------------------------------------
Confidence                55999988  678889999999999999999999765432                                    


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC-cceeeeeecCCCcccCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~  267 (457)
                                               .+|.+.|+.++|+.+...+++| .|.++++||.+.. .+++++       +....
T Consensus        98 -------------------------rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-------ldea~  145 (307)
T KOG0316|consen   98 -------------------------RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-------LDEAK  145 (307)
T ss_pred             -------------------------ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch-------hhhhc
Confidence                                     6899999999999999999999 9999999999843 244544       45566


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-  346 (457)
                      ..|.++..+.   ..|+.|+.||+++.||++.+.+..    -+               ...+|++++|+++++..++++ 
T Consensus       146 D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s----Dy---------------~g~pit~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  146 DGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS----DY---------------FGHPITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             CceeEEEecc---cEEEeeccCCcEEEEEeecceeeh----hh---------------cCCcceeEEecCCCCEEEEeec
Confidence            7888888775   569999999999999999986431    11               135899999999999988887 


Q ss_pred             cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      ++++++.|-.+ ++++..+++|.+...+             +.++++.....+++|++||.|++||+... ..+..++.+
T Consensus       204 ~stlrLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLvd~-~~~sk~~~~  268 (307)
T KOG0316|consen  204 DSTLRLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLVDE-TQISKLSVV  268 (307)
T ss_pred             cceeeecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEeccc-eeeeeeccC
Confidence            59999999987 9999999999876533             47888888899999999999999999988 778888888


Q ss_pred             CCc-ceeeeeccCCcceecccccc
Q 012721          427 KNE-NRKPILQAAPRARRSSLSNL  449 (457)
Q Consensus       427 ~~~-v~~~~~~p~~~~~~~~~~~~  449 (457)
                      ..+ +..+.+||..+......+..
T Consensus       269 ~~v~v~dl~~hp~~~~f~~A~~~~  292 (307)
T KOG0316|consen  269 STVIVTDLSCHPTMDDFITATGHG  292 (307)
T ss_pred             CceeEEeeecccCccceeEecCCc
Confidence            888 89999999988776654433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.4e-34  Score=258.71  Aligned_cols=332  Identities=17%  Similarity=0.221  Sum_probs=256.7

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ...|.+.|.++.|+.|.++|++|+.|-+++||.++..+..                         ....+.+|.      
T Consensus       141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-------------------------~~~~l~gHk------  189 (893)
T KOG0291|consen  141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-------------------------FTYALNGHK------  189 (893)
T ss_pred             ecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-------------------------ceEeccCCC------
Confidence            4568999999999999999999999999999999876643                         456788999      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc------------------------cc------eeEEEeecC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD------------------------QK------VKKIKEMDH  157 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~------------------------~~------~~~~~~~~~  157 (457)
                            +.|.+.-|  ..+...+++.+.||.+.+|....                        .+      .......-.
T Consensus       190 ------d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l  261 (893)
T KOG0291|consen  190 ------DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL  261 (893)
T ss_pred             ------cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence                  78888888  67888899999999999998761                        11      011111111


Q ss_pred             C---CceeeeeeccccccccccCCC------------------------CCceeccCCcccc-----ccceEEEeccCcc
Q 012721          158 F---PFVSSENTLLAEKNFMNEHNP------------------------PSFAHGYHLEWTE-----NMATKIANVGNSV  205 (457)
Q Consensus       158 ~---~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~-----~~~i~~~~~~~~~  205 (457)
                      .   ..+++.+|++....+......                        ..+.+...|.|..     -+.+.+|+++.+ 
T Consensus       262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-  340 (893)
T KOG0291|consen  262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-  340 (893)
T ss_pred             cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-
Confidence            1   346666666553322211110                        1223334455522     227888988643 


Q ss_pred             ccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721          206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (457)
Q Consensus       206 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~  284 (457)
                        ..+... ++|...+++++++|||+++++| .||.|+|||.. .+-|+.+       +..|+..|+.+.|+..| +.++
T Consensus       341 --sYVlKQ-QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vT-------FteHts~Vt~v~f~~~g-~~ll  408 (893)
T KOG0291|consen  341 --SYVLKQ-QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVT-------FTEHTSGVTAVQFTARG-NVLL  408 (893)
T ss_pred             --ceeeec-cccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEEE-------eccCCCceEEEEEEecC-CEEE
Confidence              222222 7999999999999999999999 99999999998 6777755       78899999999999999 9999


Q ss_pred             EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCce
Q 012721          285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPV  362 (457)
Q Consensus       285 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~  362 (457)
                      +++.||+|+.||+......    +++.. +.           .....+++..|.|.++.+|+ | -.|.+|++.+ ++++
T Consensus       409 ssSLDGtVRAwDlkRYrNf----RTft~-P~-----------p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT-Gqll  471 (893)
T KOG0291|consen  409 SSSLDGTVRAWDLKRYRNF----RTFTS-PE-----------PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT-GQLL  471 (893)
T ss_pred             EeecCCeEEeeeeccccee----eeecC-CC-----------ceeeeEEEEcCCCCEEEeeccceEEEEEEEeec-Ceee
Confidence            9999999999999876543    55544 10           13467899999999999886 4 8899999997 9999


Q ss_pred             eEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcce
Q 012721          363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR  442 (457)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  442 (457)
                      ..+.+|++++               .+++|+|++..|++++.|.+|++||+-......-+ -.+...+..++|+|+|.-.
T Consensus       472 DiLsGHEgPV---------------s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt-l~i~sdvl~vsfrPdG~el  535 (893)
T KOG0291|consen  472 DILSGHEGPV---------------SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET-LEIRSDVLAVSFRPDGKEL  535 (893)
T ss_pred             ehhcCCCCcc---------------eeeEEccccCeEEeccccceEEEEEeeccCceeee-EeeccceeEEEEcCCCCeE
Confidence            9999999987               58999999999999999999999999776333333 4468899999999999877


Q ss_pred             ec
Q 012721          443 RS  444 (457)
Q Consensus       443 ~~  444 (457)
                      +.
T Consensus       536 aV  537 (893)
T KOG0291|consen  536 AV  537 (893)
T ss_pred             EE
Confidence            66

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.6e-34  Score=272.60  Aligned_cols=278  Identities=24%  Similarity=0.427  Sum_probs=234.0

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      |...|.|+.|+++|++|++++.++.+++|+......                         .....+.+|.         
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~---------  203 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHT---------  203 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccc---------
Confidence            478999999999999999999999999999965541                         1344567888         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc-cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                         ..|.+++|  ++++.++++++.|++|++||+.. +.....                                     
T Consensus       204 ---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~~-------------------------------------  241 (456)
T KOG0266|consen  204 ---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLKT-------------------------------------  241 (456)
T ss_pred             ---cceeeeEE--CCCCcEEEEecCCceEEEeeccCCCeEEEE-------------------------------------
Confidence               88999999  78999999999999999999933 333322                                     


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                             + .+|...|++++|+|+++++++| .|++|+|||++ .+.+...       +.+|..
T Consensus       242 -----------------------l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-~~~~~~~-------l~~hs~  289 (456)
T KOG0266|consen  242 -----------------------L-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-TGECVRK-------LKGHSD  289 (456)
T ss_pred             -----------------------e-cCCCCceEEEEecCCCCEEEEecCCCcEEEEecc-CCeEEEe-------eeccCC
Confidence                                   2 6999999999999999999999 99999999999 5677765       789999


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc--ceEEEEEccCCCeEEEEe
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRD  346 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~  346 (457)
                      .|++++|++++ ++|++++.|+.|++||+.++...  ....+..             +..  .+++++|+|+++|++++.
T Consensus       290 ~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~-------------~~~~~~~~~~~fsp~~~~ll~~~  353 (456)
T KOG0266|consen  290 GISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSG-------------AENSAPVTSVQFSPNGKYLLSAS  353 (456)
T ss_pred             ceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccC-------------CCCCCceeEEEECCCCcEEEEec
Confidence            99999999999 99999999999999999998631  0122222             112  599999999999999987


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      + +.+++||+.. ......+.+|.....         ++   ++...++.+.++++|+.|+.|++|++.++ .....+++
T Consensus       354 ~d~~~~~w~l~~-~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~  419 (456)
T KOG0266|consen  354 LDRTLKLWDLRS-GKSVGTYTGHSNLVR---------CI---FSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG  419 (456)
T ss_pred             CCCeEEEEEccC-CcceeeecccCCcce---------eE---ecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence            6 8999999985 788888888887521         11   35566889999999999999999999997 78889999


Q ss_pred             C-CCcceeeeeccCCcceeccc
Q 012721          426 G-KNENRKPILQAAPRARRSSL  446 (457)
Q Consensus       426 ~-~~~v~~~~~~p~~~~~~~~~  446 (457)
                      | ...+..+.++|......++-
T Consensus       420 h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  420 HSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             CCCCceeccccCCCcCeeeecC
Confidence            9 99999999999998888843

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.5e-35  Score=246.82  Aligned_cols=258  Identities=18%  Similarity=0.310  Sum_probs=220.4

Q ss_pred             cchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCc
Q 012721           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (457)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (457)
                      ..+|++..++..        |.+.|.|+++.|.+.+|++|+.|++|+|||+.+++                         
T Consensus       138 HapwKl~rVi~g--------HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------------------------  184 (460)
T KOG0285|consen  138 HAPWKLYRVISG--------HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------------------------  184 (460)
T ss_pred             cCcceehhhhhh--------ccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------------------------
Confidence            345677776665        99999999999999999999999999999999887                         


Q ss_pred             cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccc
Q 012721           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (457)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (457)
                        +..++.||-            ..|..+++  ++--.|+++++.|+.|+.||++..+..+.                  
T Consensus       185 --LkltltGhi------------~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~nkvIR~------------------  230 (460)
T KOG0285|consen  185 --LKLTLTGHI------------ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEYNKVIRH------------------  230 (460)
T ss_pred             --EEEeecchh------------heeeeeee--cccCceEEEecCCCeeEEEechhhhhHHH------------------
Confidence              457899998            88999999  67778999999999999999988754432                  


Q ss_pred             ccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC
Q 012721          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (457)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~  249 (457)
                                                                + .+|-..|+|++.+|.-..|++| .|..+++||++ .
T Consensus       231 ------------------------------------------Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-t  266 (460)
T KOG0285|consen  231 ------------------------------------------Y-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-T  266 (460)
T ss_pred             ------------------------------------------h-ccccceeEEEeccccceeEEecCCcceEEEeeec-c
Confidence                                                      2 6899999999999999999999 99999999999 4


Q ss_pred             cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      ...+.+       +.+|..+|.++.+.|.. ..+++||.|++|++||++.++..       ..          +..|...
T Consensus       267 r~~V~~-------l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~-------~t----------lt~hkks  321 (460)
T KOG0285|consen  267 RASVHV-------LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM-------IT----------LTHHKKS  321 (460)
T ss_pred             cceEEE-------ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee-------Ee----------eecccce
Confidence            555544       78999999999999988 78999999999999999998532       11          3557789


Q ss_pred             eEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEE
Q 012721          330 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  409 (457)
Q Consensus       330 v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~  409 (457)
                      |.+++.+|....+|+++-..|+-|++.. +..+..+.+|...+               .+++...|+ ++++|+++|.+.
T Consensus       322 vral~lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng~~~  384 (460)
T KOG0285|consen  322 VRALCLHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNGSIM  384 (460)
T ss_pred             eeEEecCCchhhhhccCCccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCceEEE
Confidence            9999999999999999888999999964 78888888898776               477777665 788999999999


Q ss_pred             EEecCCCCceeeE
Q 012721          410 IFSHGVGSAGGIT  422 (457)
Q Consensus       410 iw~~~~~~~~~~~  422 (457)
                      +||.++| ...+.
T Consensus       385 fwdwksg-~nyQ~  396 (460)
T KOG0285|consen  385 FWDWKSG-HNYQR  396 (460)
T ss_pred             EEecCcC-ccccc
Confidence            9999998 44333

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.4e-35  Score=248.66  Aligned_cols=273  Identities=16%  Similarity=0.287  Sum_probs=226.9

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      |++.|+-+.||++|+|||+++.|.+..||++....                        ..+...++.+|.         
T Consensus       223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------~~kl~~tlvgh~---------  269 (519)
T KOG0293|consen  223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------HFKLKKTLVGHS---------  269 (519)
T ss_pred             CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------ceeeeeeeeccc---------
Confidence            99999999999999999999999999999987554                        235778899999         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         .+|..+.|  |||..++++|+.|..+++||+.+|.....+.                                    
T Consensus       270 ---~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~------------------------------------  308 (519)
T KOG0293|consen  270 ---QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLYP------------------------------------  308 (519)
T ss_pred             ---CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhhcc------------------------------------
Confidence               88999999  8999999999999999999999987654432                                    


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC-CC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TE  268 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~  268 (457)
                                              .++...+.+++|.|||..+++| .|+.+..||++ +. ...-       +++- .-
T Consensus       309 ------------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn-~~~~-------W~gvr~~  355 (519)
T KOG0293|consen  309 ------------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GN-ILGN-------WEGVRDP  355 (519)
T ss_pred             ------------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cc-hhhc-------ccccccc
Confidence                                    4566789999999999999999 99999999998 33 2222       2222 24


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ec
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~  347 (457)
                      .|.+++..+|| +++++...|..|++|+..+....    .+...              ..+|++.+.|.+++++++. .+
T Consensus       356 ~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise--------------~~~its~~iS~d~k~~LvnL~~  416 (519)
T KOG0293|consen  356 KVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISE--------------EQPITSFSISKDGKLALVNLQD  416 (519)
T ss_pred             eeEEEEEcCCC-cEEEEEecccceeeechhhhhhh----ccccc--------------cCceeEEEEcCCCcEEEEEccc
Confidence            58999999999 88888889999999998875322    22332              3689999999999999876 45


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      ..+++||++ +.+.+..+.+|......             ..-+|.. +..++++|++|+.|+||+..+| +.+.++.||
T Consensus       417 qei~LWDl~-e~~lv~kY~Ghkq~~fi-------------IrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGH  481 (519)
T KOG0293|consen  417 QEIHLWDLE-ENKLVRKYFGHKQGHFI-------------IRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGH  481 (519)
T ss_pred             CeeEEeecc-hhhHHHHhhcccccceE-------------EEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeecCC
Confidence            999999998 58889999998865321             2345543 5689999999999999999999 899999999


Q ss_pred             CCcceeeeeccCCcceec
Q 012721          427 KNENRKPILQAAPRARRS  444 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~  444 (457)
                      ...|++|+|+|..|....
T Consensus       482 s~~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  482 SKTVNCVSWNPADPEMFA  499 (519)
T ss_pred             cceeeEEecCCCCHHHhh
Confidence            999999999999876655

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.4e-34  Score=249.21  Aligned_cols=289  Identities=19%  Similarity=0.271  Sum_probs=218.9

Q ss_pred             ccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc-c
Q 012721           28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF-D  105 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-~  105 (457)
                      .+.|..+|.+.+|+|-.. +||+|+.|-+.++|++......     +...+                  .|+ |.  + .
T Consensus       174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~-----~~~q~------------------~lr-h~--~~~  227 (524)
T KOG0273|consen  174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNI-----GSTQL------------------VLR-HC--IRE  227 (524)
T ss_pred             eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccc-----cchhh------------------hhh-hh--hhh
Confidence            345999999999999665 9999999999999998741110     00000                  011 10  0 0


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                      ..++...+..|++++|  +.+|+.||+|+.||.+++|+.........                                 
T Consensus       228 ~~~s~~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~tl---------------------------------  272 (524)
T KOG0273|consen  228 GGKSVPSNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLISTL---------------------------------  272 (524)
T ss_pred             hcccCCccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhhh---------------------------------
Confidence            1233344478999999  78999999999999999999876543221                                 


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeee---------
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI---------  255 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~---------  255 (457)
                                                   ..|.++|.++.|+.+|.+|+++ .|+++.+||..+ +...+.         
T Consensus       273 -----------------------------~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q~f~~~s~~~l  322 (524)
T KOG0273|consen  273 -----------------------------GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQQFEFHSAPAL  322 (524)
T ss_pred             -----------------------------hccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEEeeeeccCCcc
Confidence                                         5678888888888888888888 888888888752 222111         


Q ss_pred             ---------------------eec----CCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccc
Q 012721          256 ---------------------VDM----KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL  310 (457)
Q Consensus       256 ---------------------~~~----~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~  310 (457)
                                           +.+    +..++.+|.+.|.++.|+|.+ .+|+++|.|++++||.+......       
T Consensus       323 DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~-------  394 (524)
T KOG0273|consen  323 DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSV-------  394 (524)
T ss_pred             ceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcch-------
Confidence                                 111    113567899999999999999 99999999999999998765322       


Q ss_pred             cccccccCcccceeccccceEEEEEccCC---------CeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccC
Q 012721          311 RDAAESHGSKSFFTEIIASISDIKFANDG---------QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN  380 (457)
Q Consensus       311 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~g---------~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (457)
                      .          .+.+|...|..+.|+|.|         ..|+++ .|++|++||+.. +.++..+..|..++        
T Consensus       395 ~----------~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pV--------  455 (524)
T KOG0273|consen  395 H----------DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPV--------  455 (524)
T ss_pred             h----------hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCce--------
Confidence            1          146678899999999975         345655 469999999986 99999999999876        


Q ss_pred             CCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCccee
Q 012721          381 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  443 (457)
Q Consensus       381 ~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  443 (457)
                             ++++|+|+|+|+|+|+.||.|.+|+.+++ +..+... ..+.|..+.|+.++....
T Consensus       456 -------ysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s~~-~~~~Ifel~Wn~~G~kl~  509 (524)
T KOG0273|consen  456 -------YSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKSYQ-GTGGIFELCWNAAGDKLG  509 (524)
T ss_pred             -------EEEEecCCCcEEEecCCCCeeEeccccch-heeEeec-CCCeEEEEEEcCCCCEEE
Confidence                   79999999999999999999999999999 5555544 466699999999984443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.8e-34  Score=261.63  Aligned_cols=354  Identities=16%  Similarity=0.207  Sum_probs=256.2

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|+++|.-++|+|.+.+||+|+.||.+++||+..+.                           +...|+||.       
T Consensus       102 a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~---------------------------~th~fkG~g-------  147 (775)
T KOG0319|consen  102 AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY---------------------------CTHSFKGHG-------  147 (775)
T ss_pred             hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE---------------------------EEEEecCCC-------
Confidence            3499999999999999999999999999999998665                           678899999       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccce-eEEEeecCCCceeeeeeccccccccccCCCC-------
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-------  180 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  180 (457)
                           +.|.++.|.|..+-..|++|..|+++++||+.+... ...... ....|++++|......++..+...       
T Consensus       148 -----GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~-H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~  221 (775)
T KOG0319|consen  148 -----GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMIL-HKSAVTSLAFSEDSLELLSVGRDKVIIVWDL  221 (775)
T ss_pred             -----ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHh-hhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence                 899999998777777899999999999999986543 111111 112344455444432222222211       


Q ss_pred             ----------------CceeccC-----Ccc----ccccc----------------------------------------
Q 012721          181 ----------------SFAHGYH-----LEW----TENMA----------------------------------------  195 (457)
Q Consensus       181 ----------------~~~~~~~-----~~~----~~~~~----------------------------------------  195 (457)
                                      ...+...     +.+    ...+.                                        
T Consensus       222 ~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta  301 (775)
T KOG0319|consen  222 VQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA  301 (775)
T ss_pred             hhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc
Confidence                            0000000     000    00112                                        


Q ss_pred             ---eEEEeccCcc----------------------------------------ccccceeeccCCCCCeeEEEeCCCCCE
Q 012721          196 ---TKIANVGNSV----------------------------------------HARCQKVYPHAHDFNINSISNNSDCET  232 (457)
Q Consensus       196 ---i~~~~~~~~~----------------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~  232 (457)
                         +.++|.++-.                                        ...| + +..+|+..|.+++...+|.+
T Consensus       302 eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-~-ii~GH~e~vlSL~~~~~g~l  379 (775)
T KOG0319|consen  302 EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-Q-IIPGHTEAVLSLDVWSSGDL  379 (775)
T ss_pred             cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce-E-EEeCchhheeeeeecccCcE
Confidence               2222222100                                        0011 2 33789999999996667889


Q ss_pred             EEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee--------
Q 012721          233 FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--------  303 (457)
Q Consensus       233 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~--------  303 (457)
                      |++| .|+++++|.++ .+......   .....+|.+.|.+++++..+..+|+++|.|+++++|++...+..        
T Consensus       380 lat~sKD~svilWr~~-~~~~~~~~---~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~  455 (775)
T KOG0319|consen  380 LATGSKDKSVILWRLN-NNCSKSLC---VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC  455 (775)
T ss_pred             EEEecCCceEEEEEec-CCcchhhh---hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence            9999 99999999885 22211110   02357899999999998888789999999999999998873211        


Q ss_pred             ----------------------------ccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEe
Q 012721          304 ----------------------------DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWD  354 (457)
Q Consensus       304 ----------------------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd  354 (457)
                                                  ++..++|..  +.-.....+.+|...|+++.|+|..+.+++++ |++|+||.
T Consensus       456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l--e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~  533 (775)
T KOG0319|consen  456 RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL--EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS  533 (775)
T ss_pred             hHHHHhhcccccceEecCCCceEEecccccceeeecc--cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence                                        111112221  01122256889999999999999999999986 59999999


Q ss_pred             ccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeee
Q 012721          355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI  434 (457)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~  434 (457)
                      +.+ ..+++++.+|...+               ..+.|-.++..|++++.||.|++|+++++ .+..++.+|...|++++
T Consensus       534 is~-fSClkT~eGH~~aV---------------lra~F~~~~~qliS~~adGliKlWnikt~-eC~~tlD~H~DrvWaL~  596 (775)
T KOG0319|consen  534 IST-FSCLKTFEGHTSAV---------------LRASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTLDAHNDRVWALS  596 (775)
T ss_pred             ecc-ceeeeeecCcccee---------------EeeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhhhhccceeEEEe
Confidence            986 89999999999876               78999999999999999999999999999 89999999999999999


Q ss_pred             eccCCcceecccc
Q 012721          435 LQAAPRARRSSLS  447 (457)
Q Consensus       435 ~~p~~~~~~~~~~  447 (457)
                      .+|...+..+|-+
T Consensus       597 ~~~~~~~~~tgg~  609 (775)
T KOG0319|consen  597 VSPLLDMFVTGGG  609 (775)
T ss_pred             ecCccceeEecCC
Confidence            9999988886433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=225.83  Aligned_cols=259  Identities=16%  Similarity=0.260  Sum_probs=213.0

Q ss_pred             CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEe
Q 012721           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (457)
Q Consensus        44 ~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~  123 (457)
                      .-+||+++.|-+|++|...++.                           +..+++-.+            ..|+.+..  
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~---------------------------C~rTiqh~d------------sqVNrLei--   48 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGI---------------------------CSRTIQHPD------------SQVNRLEI--   48 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCe---------------------------EEEEEecCc------------cceeeEEE--
Confidence            4689999999999999999887                           556666555            77999999  


Q ss_pred             cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccC
Q 012721          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (457)
Q Consensus       124 s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  203 (457)
                      .|++..|++++. ..|++||++++....+                                                   
T Consensus        49 Tpdk~~LAaa~~-qhvRlyD~~S~np~Pv---------------------------------------------------   76 (311)
T KOG0315|consen   49 TPDKKDLAAAGN-QHVRLYDLNSNNPNPV---------------------------------------------------   76 (311)
T ss_pred             cCCcchhhhccC-CeeEEEEccCCCCCce---------------------------------------------------
Confidence            788888887776 5699999998754322                                                   


Q ss_pred             ccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccE
Q 012721          204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  282 (457)
Q Consensus       204 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~  282 (457)
                             ..+ .+|...|.++.|..+|+.+++| +||+++|||++ ...+.+.        -.|..+|+++..+|+. ..
T Consensus        77 -------~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR-~~~~qR~--------~~~~spVn~vvlhpnQ-te  138 (311)
T KOG0315|consen   77 -------ATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR-SLSCQRN--------YQHNSPVNTVVLHPNQ-TE  138 (311)
T ss_pred             -------eEE-eccCCceEEEEEeecCeEEEecCCCceEEEEecc-Ccccchh--------ccCCCCcceEEecCCc-ce
Confidence                   223 6899999999999999999999 99999999999 4444433        3467999999999998 89


Q ss_pred             EEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccC----
Q 012721          283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM----  357 (457)
Q Consensus       283 l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~----  357 (457)
                      |++|..+|.|++||+.......   ..+..             -...|.++...|||.+|+++.+ |..++|++-.    
T Consensus       139 Lis~dqsg~irvWDl~~~~c~~---~liPe-------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~  202 (311)
T KOG0315|consen  139 LISGDQSGNIRVWDLGENSCTH---ELIPE-------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA  202 (311)
T ss_pred             EEeecCCCcEEEEEccCCcccc---ccCCC-------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc
Confidence            9999999999999999863221   11111             1357999999999999999987 9999999843    


Q ss_pred             -CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721          358 -DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  436 (457)
Q Consensus       358 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~  436 (457)
                       .-+++..++.|..-+               +.+.+|||+++||+++.|.+++||+..+--+....+++|...+...+||
T Consensus       203 s~l~P~~k~~ah~~~i---------------l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS  267 (311)
T KOG0315|consen  203 SELEPVHKFQAHNGHI---------------LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS  267 (311)
T ss_pred             ccceEhhheecccceE---------------EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence             124566788888765               6899999999999999999999999988766778899999999999999


Q ss_pred             cCCcceec
Q 012721          437 AAPRARRS  444 (457)
Q Consensus       437 p~~~~~~~  444 (457)
                      .|+.-...
T Consensus       268 ~dg~YlvT  275 (311)
T KOG0315|consen  268 ADGEYLVT  275 (311)
T ss_pred             cCccEEEe
Confidence            99876655

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=9.7e-35  Score=252.50  Aligned_cols=276  Identities=16%  Similarity=0.202  Sum_probs=228.2

Q ss_pred             ccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      .-+|+..|+++.|.| .+.+|++|+.|+.|+||++....                          .+++++.||.     
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--------------------------~~lrtf~gH~-----  258 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--------------------------RCLRTFKGHR-----  258 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------------------------ceehhhhcch-----
Confidence            345999999999999 89999999999999999998743                          3788999999     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             .+|.+++|  +++|..|++++.|+.|++||+++|++.....                                
T Consensus       259 -------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--------------------------------  297 (503)
T KOG0282|consen  259 -------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFH--------------------------------  297 (503)
T ss_pred             -------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEe--------------------------------
Confidence                   89999999  7999999999999999999999998765432                                


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                                    -...++|+.|+|++ +.+++| .|+.|+.||++ .++.++.       +.
T Consensus       298 ------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-s~kvvqe-------Yd  339 (503)
T KOG0282|consen  298 ------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-SGKVVQE-------YD  339 (503)
T ss_pred             ------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEecc-chHHHHH-------HH
Confidence                                          23367899999988 778888 99999999999 5665543       67


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      .|-+.|..+.|-++| ..+++.+.|++++||+.+..-....   +...             +.-...++..+|++.++++
T Consensus       340 ~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~---i~~~-------------~~hsmP~~~~~P~~~~~~a  402 (503)
T KOG0282|consen  340 RHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKN---IADP-------------EMHTMPCLTLHPNGKWFAA  402 (503)
T ss_pred             hhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchh---hcch-------------hhccCcceecCCCCCeehh
Confidence            788999999999999 9999999999999999988643211   1111             1134678899999999998


Q ss_pred             Ee-cCcEEEEeccCC--CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceee
Q 012721          345 RD-YMNLKLWDIRMD--STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  421 (457)
Q Consensus       345 ~~-~~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~  421 (457)
                      -+ ++.|.++.+...  ......+.+|......             ..+.|||||.+|++|+.||.+.+||.++- +...
T Consensus       403 Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys-------------~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~  468 (503)
T KOG0282|consen  403 QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS-------------CQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVS  468 (503)
T ss_pred             hccCceEEEEecccccccCHhhhhcceeccCce-------------eeEEEcCCCCeEEeecCCccEEEeechhh-hhhh
Confidence            76 499999987532  2234566777644211             47899999999999999999999999998 7889


Q ss_pred             EEecCCCcceeeeeccCCcceec
Q 012721          422 TVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       422 ~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ++++|..++..+.|||.-++...
T Consensus       469 ~lkah~~~ci~v~wHP~e~Skva  491 (503)
T KOG0282|consen  469 KLKAHDQPCIGVDWHPVEPSKVA  491 (503)
T ss_pred             ccccCCcceEEEEecCCCcceeE
Confidence            99999999999999999877654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-32  Score=222.68  Aligned_cols=277  Identities=16%  Similarity=0.297  Sum_probs=215.8

Q ss_pred             cccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee-ccCCccccc
Q 012721           29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDY  106 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~  106 (457)
                      ..|++.|..++|+|- |.+||+++.|+.|+||+...+.                        .+.+...+ .+|+     
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------------s~~ck~vld~~hk-----   61 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD------------------------SWTCKTVLDDGHK-----   61 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC------------------------cEEEEEeccccch-----
Confidence            358999999999997 8899999999999999987533                        23444444 3566     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ..|.+++|  +|.|++|+++|.|.++.||.-..++...+                                  
T Consensus        62 -------rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efecv----------------------------------   98 (312)
T KOG0645|consen   62 -------RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFECV----------------------------------   98 (312)
T ss_pred             -------heeeeeee--cCCCcEEEEeeccceEEEeecCCCceeEE----------------------------------
Confidence                   88999999  78999999999999999998776654432                                  


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                              .++ .+|...|.|++|+++|++||+| .|++|.||.+. .+..+...    ..+++
T Consensus        99 ------------------------~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~----aVL~~  148 (312)
T KOG0645|consen   99 ------------------------ATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECI----AVLQE  148 (312)
T ss_pred             ------------------------eee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEE----eeecc
Confidence                                    222 7999999999999999999999 99999999998 33332222    22789


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      |...|..+.|+|.. .+|++++.|++|++|+-..+.              .-.....+.+|...|++++|++.|..|+++
T Consensus       149 HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dd--------------dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~  213 (312)
T KOG0645|consen  149 HTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDD--------------DWECVQTLDGHENTVWSLAFDNIGSRLVSC  213 (312)
T ss_pred             ccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCC--------------CeeEEEEecCccceEEEEEecCCCceEEEe
Confidence            99999999999998 899999999999999865321              111123356778899999999999999999


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC-C-----c
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-S-----A  418 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~-~-----~  418 (457)
                      ++ ++++||-....   +  -..|...+               +.+.|.  ...|++++.|+.|++|.-... .     .
T Consensus       214 sdD~tv~Iw~~~~~---~--~~~~sr~~---------------Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l  271 (312)
T KOG0645|consen  214 SDDGTVSIWRLYTD---L--SGMHSRAL---------------YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL  271 (312)
T ss_pred             cCCcceEeeeeccC---c--chhcccce---------------Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHH
Confidence            86 99999986521   1  11233332               578887  557999999999999987653 0     1


Q ss_pred             eeeEEecCCCcceeeeeccCCcceec
Q 012721          419 GGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       419 ~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ....-..|...|++|.|.|..+.++.
T Consensus       272 ~~~~~~aHe~dVNsV~w~p~~~~~L~  297 (312)
T KOG0645|consen  272 LAKKEGAHEVDVNSVQWNPKVSNRLA  297 (312)
T ss_pred             HHhhhcccccccceEEEcCCCCCcee
Confidence            12244688999999999996555554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.4e-32  Score=238.98  Aligned_cols=349  Identities=14%  Similarity=0.215  Sum_probs=241.7

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      +|...++-..|||.|-|+|+|...|+|+|||....+..                         +..+++.-.        
T Consensus        57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hi-------------------------LKnef~v~a--------  103 (603)
T KOG0318|consen   57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHI-------------------------LKNEFQVLA--------  103 (603)
T ss_pred             cccceeEEEEeCCCceEEeecCCcCcEEEEeccCccee-------------------------eeeeeeecc--------
Confidence            39999999999999999999999999999998765432                         344555555        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeC--C--CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTN--D--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~--d--~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                          ++|..++|  +.++..|++.++  +  |.+.+||.-+  ..-.+. .....+.++.|-+....-+....       
T Consensus       104 ----G~I~Di~W--d~ds~RI~avGEGrerfg~~F~~DSG~--SvGei~-GhSr~ins~~~KpsRPfRi~T~s-------  167 (603)
T KOG0318|consen  104 ----GPIKDISW--DFDSKRIAAVGEGRERFGHVFLWDSGN--SVGEIT-GHSRRINSVDFKPSRPFRIATGS-------  167 (603)
T ss_pred             ----ccccccee--CCCCcEEEEEecCccceeEEEEecCCC--ccceee-ccceeEeeeeccCCCceEEEecc-------
Confidence                89999999  789999888663  2  4566666432  221111 11223445555443332222111       


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                            .+..+.+++-   +..+....+ ..|..-|+|+.|+|||.++++. .||.+.+||=. .++.+..+.    .-.
T Consensus       168 ------dDn~v~ffeG---PPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk-tge~vg~l~----~~~  232 (603)
T KOG0318|consen  168 ------DDNTVAFFEG---PPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK-TGEKVGELE----DSD  232 (603)
T ss_pred             ------CCCeEEEeeC---CCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCC-CccEEEEec----CCC
Confidence                  1223334332   122222233 7899999999999999999998 99999999988 555555432    135


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc----------------------------ccccccccccc
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH----------------------------SARILRDAAES  316 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~----------------------------~~~~~~~~~~~  316 (457)
                      +|.+.|.+++|+||+ ..+++++.|.+++|||+.+.++...                            .+..+.  ...
T Consensus       233 aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln--~~d  309 (603)
T KOG0318|consen  233 AHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLN--PSD  309 (603)
T ss_pred             CccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEec--ccC
Confidence            899999999999999 9999999999999999998754311                            001111  122


Q ss_pred             cCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCC----------ceeEeeecc-ccc---------c--
Q 012721          317 HGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST----------PVATFKIHE-HLR---------P--  373 (457)
Q Consensus       317 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~----------~~~~~~~~~-~~~---------~--  373 (457)
                      +.....+.+|...|+++..+|++++|++|+. |.|.-|+......          .+..+..++ +.+         .  
T Consensus       310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~  389 (603)
T KOG0318|consen  310 PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI  389 (603)
T ss_pred             CChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence            2344678899999999999999999999986 9999999864211          111111111 000         0  


Q ss_pred             --------------------ccc-----------------------cccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721          374 --------------------KLC-----------------------DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  410 (457)
Q Consensus       374 --------------------~~~-----------------------~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i  410 (457)
                                          .++                       .....+..+...+++++|++..++.|+.|+.|+|
T Consensus       390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv  469 (603)
T KOG0318|consen  390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV  469 (603)
T ss_pred             ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEE
Confidence                                000                       0011222233467899999999999999999999


Q ss_pred             EecCCCC-ceeeEEecCCCcceeeeeccCCcceecc
Q 012721          411 FSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       411 w~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      |.+.-++ ....++..|.++++.++++||+...+.|
T Consensus       470 ysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~  505 (603)
T KOG0318|consen  470 YSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG  505 (603)
T ss_pred             EEecCCcccceeeeecccCCceEEEECCCCcEEEEe
Confidence            9998764 4455788999999999999999888774

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-33  Score=260.67  Aligned_cols=277  Identities=19%  Similarity=0.311  Sum_probs=205.7

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCccc---chh-----------------hhhhc------c--
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI---SRS-----------------ELEKQ------M--   81 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~---~~~-----------------~~~~~------~--   81 (457)
                      .|.++|+++.||+||+|||+|+.||.|+||.+...+.......   |+.                 .+...      +  
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5999999999999999999999999999999876221100000   000                 00000      0  


Q ss_pred             -c----ccccCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeec
Q 012721           82 -D----FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD  156 (457)
Q Consensus        82 -~----~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~  156 (457)
                       .    +.+.+.=..+++..|.||.            +.|.++.|  +.+ ++|++++.|++|+||++...+++..    
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSW--SKn-~fLLSSSMDKTVRLWh~~~~~CL~~----  405 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSW--SKN-NFLLSSSMDKTVRLWHPGRKECLKV----  405 (712)
T ss_pred             CccccCCCccccccccchhhhhccc------------hhheeccc--ccC-CeeEeccccccEEeecCCCcceeeE----
Confidence             0    0001111345667788888            88999999  454 5999999999999999987765544    


Q ss_pred             CCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEE
Q 012721          157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS  235 (457)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~  235 (457)
                                                                                ..|...|+|++|+| |.++|++
T Consensus       406 ----------------------------------------------------------F~HndfVTcVaFnPvDDryFiS  427 (712)
T KOG0283|consen  406 ----------------------------------------------------------FSHNDFVTCVAFNPVDDRYFIS  427 (712)
T ss_pred             ----------------------------------------------------------EecCCeeEEEEecccCCCcEee
Confidence                                                                      37999999999999 8899999


Q ss_pred             e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccc
Q 012721          236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (457)
Q Consensus       236 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~  314 (457)
                      | -|+.|+||++. ..+...        +....+.|++++|.|+| +..++|+.+|.+++|++...++..    .+..+.
T Consensus       428 GSLD~KvRiWsI~-d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~----~~~I~~  493 (712)
T KOG0283|consen  428 GSLDGKVRLWSIS-DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVS----DFHIRL  493 (712)
T ss_pred             cccccceEEeecC-cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEE----eeeEee
Confidence            9 99999999998 444433        23344889999999999 999999999999999998876542    111100


Q ss_pred             cccCcccceeccccceEEEEEccCC--CeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE
Q 012721          315 ESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  392 (457)
Q Consensus       315 ~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  392 (457)
                      ..   ... ..|. .|+.+.|.|..  +.|++..|..|+|+|.+. ..++..+++..+....             ....|
T Consensus       494 ~~---~Kk-~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asf  554 (712)
T KOG0283|consen  494 HN---KKK-KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASF  554 (712)
T ss_pred             cc---Ccc-ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeE
Confidence            00   001 1122 79999999754  488888889999999975 7888888887665432             47899


Q ss_pred             cCCCcEEEEEeCCCcEEEEecCCC
Q 012721          393 SGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       393 s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      +.||++|+++++|..|+||++...
T Consensus       555 s~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  555 SSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             ccCCCEEEEeecCceEEEEeCCCC
Confidence            999999999999999999998543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.2e-33  Score=258.25  Aligned_cols=202  Identities=19%  Similarity=0.380  Sum_probs=181.0

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ...|.++|+.++|+|+.++|+++++|+++++|.+++..                           ++..++||.      
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s---------------------------~~V~y~GH~------  493 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS---------------------------CLVIYKGHL------  493 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccce---------------------------eEEEecCCC------
Confidence            56799999999999999999999999999999998665                           567889999      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            .+|..+.|  +|-|-+|||++.|++.++|.......                                      
T Consensus       494 ------~PVwdV~F--~P~GyYFatas~D~tArLWs~d~~~P--------------------------------------  527 (707)
T KOG0263|consen  494 ------APVWDVQF--APRGYYFATASHDQTARLWSTDHNKP--------------------------------------  527 (707)
T ss_pred             ------cceeeEEe--cCCceEEEecCCCceeeeeecccCCc--------------------------------------
Confidence                  89999999  68899999999999999999876543                                      


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                            ++++ .+|...|.|+.|+|+..++++| .|.+|++||+. .+..+++       +.||
T Consensus       528 ----------------------lRif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G~~VRi-------F~GH  576 (707)
T KOG0263|consen  528 ----------------------LRIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TGNSVRI-------FTGH  576 (707)
T ss_pred             ----------------------hhhh-cccccccceEEECCcccccccCCCCceEEEEEcC-CCcEEEE-------ecCC
Confidence                                  3333 7999999999999999999999 99999999999 7888887       6899


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      .++|.+++|+|+| .+|++|+.||.|.+||+.+++..    ..             +.+|.+.|.++.|+.+|..||+|+
T Consensus       577 ~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v----~~-------------l~~Ht~ti~SlsFS~dg~vLasgg  638 (707)
T KOG0263|consen  577 KGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSLV----KQ-------------LKGHTGTIYSLSFSRDGNVLASGG  638 (707)
T ss_pred             CCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcch----hh-------------hhcccCceeEEEEecCCCEEEecC
Confidence            9999999999999 99999999999999999998643    22             355788999999999999999986


Q ss_pred             -cCcEEEEeccC
Q 012721          347 -YMNLKLWDIRM  357 (457)
Q Consensus       347 -~~~i~~wd~~~  357 (457)
                       |++|++||+..
T Consensus       639 ~DnsV~lWD~~~  650 (707)
T KOG0263|consen  639 ADNSVRLWDLTK  650 (707)
T ss_pred             CCCeEEEEEchh
Confidence             59999999964

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-33  Score=249.25  Aligned_cols=278  Identities=16%  Similarity=0.203  Sum_probs=239.3

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .+++.|.++.|+|...+++++-.+|.|.||+.++...                           +..++-.+        
T Consensus        11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm---------------------------VksfeV~~--------   55 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM---------------------------VKSFEVSE--------   55 (794)
T ss_pred             ccCCceeeeecCCCCceEEEeeecCeeEEEeccccee---------------------------eeeeeecc--------
Confidence            3889999999999999999999999999999987763                           34555555        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          .+|.+..|.  ...+.+++|+.|..|++|+..+++.+..+                                    
T Consensus        56 ----~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt~ekV~~F------------------------------------   93 (794)
T KOG0276|consen   56 ----VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNTGEKVKTF------------------------------------   93 (794)
T ss_pred             ----cchhhheee--eccceEEEecCCceEEEEecccceeeEEe------------------------------------
Confidence                688999996  45669999999999999999998665442                                    


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                               ..|.+.|.|++.+|...+++++ +|-.|++||.+..-.+.++       +++|..
T Consensus        94 -------------------------eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt-------feGH~H  141 (794)
T KOG0276|consen   94 -------------------------EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT-------FEGHEH  141 (794)
T ss_pred             -------------------------eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE-------EcCcce
Confidence                                     6899999999999999999999 9999999999955455554       799999


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC--CeEEEEe
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRD  346 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~  346 (457)
                      .|.+++|+|..++.+++++.|++|++|.+.+..                 ...++.+|...|+++.|-+-|  .||++|+
T Consensus       142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-----------------~nfTl~gHekGVN~Vdyy~~gdkpylIsga  204 (794)
T KOG0276|consen  142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-----------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGA  204 (794)
T ss_pred             EEEEEEecCCCccceeeeeccccEEEEEcCCCC-----------------CceeeeccccCcceEEeccCCCcceEEecC
Confidence            999999999888999999999999999987642                 123457789999999998754  6999987


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      | ..|++||..+ ..++.++.+|...+               ..+.|+|.-.+|++|++||+++||+-.|- +...++..
T Consensus       205 DD~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~  267 (794)
T KOG0276|consen  205 DDLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY  267 (794)
T ss_pred             CCceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhc
Confidence            6 9999999986 89999999999876               47899999999999999999999999887 66777888


Q ss_pred             CCCcceeeeeccCCcceeccccccc
Q 012721          426 GKNENRKPILQAAPRARRSSLSNLT  450 (457)
Q Consensus       426 ~~~~v~~~~~~p~~~~~~~~~~~~~  450 (457)
                      ....+++++.++.....+.|+.+..
T Consensus       268 gleRvW~I~~~k~~~~i~vG~Deg~  292 (794)
T KOG0276|consen  268 GLERVWCIAAHKGDGKIAVGFDEGS  292 (794)
T ss_pred             CCceEEEEeecCCCCeEEEeccCCc
Confidence            8899999999888888777766543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-32  Score=222.44  Aligned_cols=244  Identities=16%  Similarity=0.194  Sum_probs=200.7

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (457)
                      ...++++|.            +.|+.++..+ .+.+.+++++.|.++.+|++......                      
T Consensus         7 l~~tl~gh~------------d~Vt~la~~~-~~~~~l~sasrDk~ii~W~L~~dd~~----------------------   51 (315)
T KOG0279|consen    7 LRGTLEGHT------------DWVTALAIKI-KNSDILVSASRDKTIIVWKLTSDDIK----------------------   51 (315)
T ss_pred             eeeeecCCC------------ceEEEEEeec-CCCceEEEcccceEEEEEEeccCccc----------------------
Confidence            456789999            7899999864 35678999999999999998765221                      


Q ss_pred             ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc
Q 012721          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  251 (457)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~  251 (457)
                                                       .+.+++.+ .+|...|..+..++||++.+++ .|+++++||+. .++
T Consensus        52 ---------------------------------~G~~~r~~-~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~-~g~   96 (315)
T KOG0279|consen   52 ---------------------------------YGVPVRRL-TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA-TGE   96 (315)
T ss_pred             ---------------------------------cCceeeee-eccceEecceEEccCCceEEeccccceEEEEEec-CCc
Confidence                                             12333334 7899999999999999999999 99999999999 555


Q ss_pred             eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  331 (457)
                      ..+.       +.+|...|.+++|+|+. ..|++|+.|.+|++||+......    .+.+            ..+...|+
T Consensus        97 ~t~~-------f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~----t~~~------------~~~~~WVs  152 (315)
T KOG0279|consen   97 STRR-------FVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKY----TIHE------------DSHREWVS  152 (315)
T ss_pred             EEEE-------EEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEE----EEec------------CCCcCcEE
Confidence            5554       78999999999999998 99999999999999999876322    1111            11257899


Q ss_pred             EEEEccC--CCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721          332 DIKFAND--GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  408 (457)
Q Consensus       332 ~~~~s~~--g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i  408 (457)
                      ++.|+|+  ..+|++++ |++|++||++. .+....+.+|.+.+               +.+++||||..+++|+.||.+
T Consensus       153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v---------------~t~~vSpDGslcasGgkdg~~  216 (315)
T KOG0279|consen  153 CVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYV---------------NTVTVSPDGSLCASGGKDGEA  216 (315)
T ss_pred             EEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccE---------------EEEEECCCCCEEecCCCCceE
Confidence            9999998  67888877 59999999985 78888888998876               689999999999999999999


Q ss_pred             EEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccc
Q 012721          409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       409 ~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~  448 (457)
                      .+||++.+ +... ...|..+|++++|+|+..-...+.+.
T Consensus       217 ~LwdL~~~-k~ly-sl~a~~~v~sl~fspnrywL~~at~~  254 (315)
T KOG0279|consen  217 MLWDLNEG-KNLY-SLEAFDIVNSLCFSPNRYWLCAATAT  254 (315)
T ss_pred             EEEEccCC-ceeE-eccCCCeEeeEEecCCceeEeeccCC
Confidence            99999998 4444 45689999999999998877665443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-31  Score=243.26  Aligned_cols=342  Identities=15%  Similarity=0.199  Sum_probs=246.6

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..-..+|.|++|||||+++|.|.. +.+.||........                   .-+.+...+++.+|.       
T Consensus        93 f~fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~-------------------~~~pFvl~r~~~g~f-------  145 (893)
T KOG0291|consen   93 FNFKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKN-------------------EFNPFVLHRTYLGHF-------  145 (893)
T ss_pred             EeecCccceEEECCCCcEEEEEec-ceeEEEecCcchhc-------------------ccCcceEeeeecCCc-------
Confidence            344789999999999999999875 47999997654431                   113455667788888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccc-cccccCCCCCceeccC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK-NFMNEHNPPSFAHGYH  187 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  187 (457)
                           ..|.++.|  +.|..+|++++.|-++++|.++..+......+..+...-.-.|...+. .++..           
T Consensus       146 -----ddi~si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tv-----------  207 (893)
T KOG0291|consen  146 -----DDITSIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTV-----------  207 (893)
T ss_pred             -----cceeEEEe--ccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEE-----------
Confidence                 78999999  789999999999999999999876654444443333222112221111 11111           


Q ss_pred             CccccccceEEEeccC------------------------cc------ccccceeeccCCCCCeeEEEeCCCCCEEEEe-
Q 012721          188 LEWTENMATKIANVGN------------------------SV------HARCQKVYPHAHDFNINSISNNSDCETFVSA-  236 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~------------------------~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-  236 (457)
                         ..++.+.+|..+.                        ..      ..+..+.++......|++.+|++..+.|++| 
T Consensus       208 ---skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF  284 (893)
T KOG0291|consen  208 ---SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGF  284 (893)
T ss_pred             ---ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEe
Confidence               1233444554431                        00      0011122333344677888888877777777 


Q ss_pred             CCCeEEEEEcCCCcceeeeeec--------------------------------CC----CcccCCCCceEEEEEecCCc
Q 012721          237 DDLRINLWNLEISDQCFNIVDM--------------------------------KP----SNMDDLTEVITSAEFHPIYC  280 (457)
Q Consensus       237 ~d~~i~iwd~~~~~~~~~~~~~--------------------------------~~----~~~~~~~~~i~~v~~~p~~~  280 (457)
                      ..|...+|++.. ..++..+.+                                ..    .+.++|...+++++++||| 
T Consensus       285 ssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-  362 (893)
T KOG0291|consen  285 SSGEFGLYELPD-FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-  362 (893)
T ss_pred             cCCeeEEEecCC-ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC-
Confidence            777777776652 111111000                                00    1257899999999999999 


Q ss_pred             cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCC
Q 012721          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  359 (457)
Q Consensus       281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~  359 (457)
                      ++||+|+.||.|+|||.+.+-+.    .+             |..|++.|+.++|+..|+.|++++ ||+|+.||+.. .
T Consensus       363 q~iaTG~eDgKVKvWn~~SgfC~----vT-------------FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-Y  424 (893)
T KOG0291|consen  363 QLIATGAEDGKVKVWNTQSGFCF----VT-------------FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-Y  424 (893)
T ss_pred             cEEEeccCCCcEEEEeccCceEE----EE-------------eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-c
Confidence            99999999999999999987543    22             456889999999999999999987 69999999974 7


Q ss_pred             CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC-cEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721          360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                      +..+++..+....-              .+++..|.|..++.|+.|. .|++|++++| +.+-.+.||.+||.+++|+|.
T Consensus       425 rNfRTft~P~p~Qf--------------scvavD~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~  489 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQF--------------SCVAVDPSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPD  489 (893)
T ss_pred             ceeeeecCCCceee--------------eEEEEcCCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccc
Confidence            88888877654321              4788889999999999886 5999999999 888999999999999999999


Q ss_pred             Ccceecccccccccccc
Q 012721          439 PRARRSSLSNLTRGLYR  455 (457)
Q Consensus       439 ~~~~~~~~~~~~~~~~~  455 (457)
                      +...++  ++-++..|.
T Consensus       490 ~~~LaS--~SWDkTVRi  504 (893)
T KOG0291|consen  490 GSLLAS--GSWDKTVRI  504 (893)
T ss_pred             cCeEEe--ccccceEEE
Confidence            998888  777776663

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-31  Score=219.60  Aligned_cols=280  Identities=19%  Similarity=0.259  Sum_probs=219.1

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      -.+.|.++.|+++|.+|++++.|.+++|||..+++.                           +.++..+.         
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~---------------------------~~ti~skk---------   56 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ---------------------------VKTINSKK---------   56 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce---------------------------eeEeeccc---------
Confidence            477999999999999999999999999999988774                           34455544         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEee--CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          111 EIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                         -.|..++|. +++ +.++.++  .|.+|+..++.+.+.++.                                    
T Consensus        57 ---yG~~~~~Ft-h~~-~~~i~sStk~d~tIryLsl~dNkylRY------------------------------------   95 (311)
T KOG1446|consen   57 ---YGVDLACFT-HHS-NTVIHSSTKEDDTIRYLSLHDNKYLRY------------------------------------   95 (311)
T ss_pred             ---ccccEEEEe-cCC-ceEEEccCCCCCceEEEEeecCceEEE------------------------------------
Confidence               568888885 333 4555555  489999999988766544                                    


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                              + .||...|++++.+|-+..++++ .|++|++||++ ...+...+         +.
T Consensus        96 ------------------------F-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l---------~~  140 (311)
T KOG1446|consen   96 ------------------------F-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLL---------NL  140 (311)
T ss_pred             ------------------------c-CCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEE---------ec
Confidence                                    2 7999999999999998999999 99999999999 55555443         22


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      ..-..++|.|+| -++|++.....|++||+|.-...  +..++.. .         .+-....+.|.|||||++|+.++.
T Consensus       141 ~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkg--PF~tf~i-~---------~~~~~ew~~l~FS~dGK~iLlsT~  207 (311)
T KOG1446|consen  141 SGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKG--PFTTFSI-T---------DNDEAEWTDLEFSPDGKSILLSTN  207 (311)
T ss_pred             CCCcceeECCCC-cEEEEecCCCeEEEEEecccCCC--CceeEcc-C---------CCCccceeeeEEcCCCCEEEEEeC
Confidence            233467899999 99999988889999999974211  1122222 0         022467899999999999998876


Q ss_pred             -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec-
Q 012721          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-  425 (457)
Q Consensus       348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-  425 (457)
                       +.+++.|.-. +.....+..+.......            ..++|+||++++++|+.||+|++|+++++ .....+.+ 
T Consensus       208 ~s~~~~lDAf~-G~~~~tfs~~~~~~~~~------------~~a~ftPds~Fvl~gs~dg~i~vw~~~tg-~~v~~~~~~  273 (311)
T KOG1446|consen  208 ASFIYLLDAFD-GTVKSTFSGYPNAGNLP------------LSATFTPDSKFVLSGSDDGTIHVWNLETG-KKVAVLRGP  273 (311)
T ss_pred             CCcEEEEEccC-CcEeeeEeeccCCCCcc------------eeEEECCCCcEEEEecCCCcEEEEEcCCC-cEeeEecCC
Confidence             9999999864 88888888776543111            47899999999999999999999999999 55666666 


Q ss_pred             CCCcceeeeeccCCcceecccccc
Q 012721          426 GKNENRKPILQAAPRARRSSLSNL  449 (457)
Q Consensus       426 ~~~~v~~~~~~p~~~~~~~~~~~~  449 (457)
                      +..++.++.|+|...+.+++=+.+
T Consensus       274 ~~~~~~~~~fnP~~~mf~sa~s~l  297 (311)
T KOG1446|consen  274 NGGPVSCVRFNPRYAMFVSASSNL  297 (311)
T ss_pred             CCCCccccccCCceeeeeecCceE
Confidence            799999999999999888854443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.1e-33  Score=234.13  Aligned_cols=244  Identities=19%  Similarity=0.301  Sum_probs=212.0

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..+|+++|..++|+..|++||+++.|-.+++||.++.                          ++++..+.+|+      
T Consensus       146 LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--------------------------~~c~ks~~gh~------  193 (406)
T KOG0295|consen  146 LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--------------------------FRCIKSLIGHE------  193 (406)
T ss_pred             hhccccceeEEEEecCccEEEecCCccchhheeHHHH--------------------------HHHHHHhcCcc------
Confidence            3459999999999999999999999988999998753                          34667788888      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ..|.++.|.|  .|.++++++.|.+|+.|++.++.++..+                                  
T Consensus       194 ------h~vS~V~f~P--~gd~ilS~srD~tik~We~~tg~cv~t~----------------------------------  231 (406)
T KOG0295|consen  194 ------HGVSSVFFLP--LGDHILSCSRDNTIKAWECDTGYCVKTF----------------------------------  231 (406)
T ss_pred             ------cceeeEEEEe--cCCeeeecccccceeEEecccceeEEec----------------------------------
Confidence                  7899999974  6789999999999999999998665442                                  


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                 .+|...|..++.+.||.++++| .|.+|++|-+. .+++...       +.+|
T Consensus       232 ---------------------------~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~-t~~~k~~-------lR~h  276 (406)
T KOG0295|consen  232 ---------------------------PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA-TKQCKAE-------LREH  276 (406)
T ss_pred             ---------------------------cCchHhEEEEEecCCeeEEEecCCCceEEEEEec-cchhhhh-------hhcc
Confidence                                       6888899999999999999999 99999999998 5655543       6789


Q ss_pred             CCceEEEEEecCC--------------ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721          267 TEVITSAEFHPIY--------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (457)
Q Consensus       267 ~~~i~~v~~~p~~--------------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  332 (457)
                      ..+|-+++|.|..              ..++.+++.|++|++||+.++.+.      +.           +.+|..+|..
T Consensus       277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL------~t-----------L~ghdnwVr~  339 (406)
T KOG0295|consen  277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL------FT-----------LVGHDNWVRG  339 (406)
T ss_pred             ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE------EE-----------Eecccceeee
Confidence            9999999997641              258999999999999999998643      33           3678899999


Q ss_pred             EEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721          333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  411 (457)
Q Consensus       333 ~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw  411 (457)
                      ++|+|.|+||+++.| +++++||++. .+++..+..|+..+               ++++|+.+..++++|+-|.++++|
T Consensus       340 ~af~p~Gkyi~ScaDDktlrvwdl~~-~~cmk~~~ah~hfv---------------t~lDfh~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  340 VAFSPGGKYILSCADDKTLRVWDLKN-LQCMKTLEAHEHFV---------------TSLDFHKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             eEEcCCCeEEEEEecCCcEEEEEecc-ceeeeccCCCccee---------------EEEecCCCCceEEeccccceeeee
Confidence            999999999998765 9999999986 89999999998876               689999999999999999999999


Q ss_pred             ec
Q 012721          412 SH  413 (457)
Q Consensus       412 ~~  413 (457)
                      ..
T Consensus       404 Ec  405 (406)
T KOG0295|consen  404 EC  405 (406)
T ss_pred             ec
Confidence            74

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.1e-31  Score=238.39  Aligned_cols=270  Identities=23%  Similarity=0.399  Sum_probs=223.1

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.++|++++|+|++++|++++.+|.|++|++.+++                           ....+.+|.        
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------~~~~~~~~~--------   51 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---------------------------LLRTLKGHT--------   51 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---------------------------cEEEEecCC--------
Confidence            489999999999999999999999999999998665                           234566777        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..+..+.|  .++++++++++.|+.|++|++.+++.....                                    
T Consensus        52 ----~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~------------------------------------   89 (289)
T cd00200          52 ----GPVRDVAA--SADGTYLASGSSDKTIRLWDLETGECVRTL------------------------------------   89 (289)
T ss_pred             ----cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceEEE------------------------------------
Confidence                77889999  577889999999999999999876433221                                    


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                               ..|...+.++.|++++++++++ .|+.|++||++ ..+....       +..|..
T Consensus        90 -------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-------~~~~~~  136 (289)
T cd00200          90 -------------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCLTT-------LRGHTD  136 (289)
T ss_pred             -------------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-CcEEEEE-------eccCCC
Confidence                                     4577789999999998899988 69999999998 4444443       456888


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~  347 (457)
                      .+.+++|+|++ .++++++.|+.|++||++.++..    ..             +..|...+.++.|+|+++.+++++ +
T Consensus       137 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~-------------~~~~~~~i~~~~~~~~~~~l~~~~~~  198 (289)
T cd00200         137 WVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCV----AT-------------LTGHTGEVNSVAFSPDGEKLLSSSSD  198 (289)
T ss_pred             cEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccc----ee-------------EecCccccceEEECCCcCEEEEecCC
Confidence            99999999997 89998888999999999875432    22             234556899999999998888776 5


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  427 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  427 (457)
                      +.|++||++. ++.+..+..|...+               .++.|+|++.++++++.||.|++|++.++ .....+..|.
T Consensus       199 ~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~  261 (289)
T cd00200         199 GTIKLWDLST-GKCLGTLRGHENGV---------------NSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQTLSGHT  261 (289)
T ss_pred             CcEEEEECCC-CceecchhhcCCce---------------EEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEEccccC
Confidence            9999999975 67777776666543               68999999999999888999999999987 6677788999


Q ss_pred             CcceeeeeccCCcceec
Q 012721          428 NENRKPILQAAPRARRS  444 (457)
Q Consensus       428 ~~v~~~~~~p~~~~~~~  444 (457)
                      ..+.++.|+|++....+
T Consensus       262 ~~i~~~~~~~~~~~l~~  278 (289)
T cd00200         262 NSVTSLAWSPDGKRLAS  278 (289)
T ss_pred             CcEEEEEECCCCCEEEE
Confidence            99999999999776665

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-32  Score=256.05  Aligned_cols=291  Identities=16%  Similarity=0.223  Sum_probs=243.7

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      .+..|..++|+|...+++++-..|.|++||..=+.                           ++..|.+|+         
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t---------------------------li~rFdeHd---------   51 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT---------------------------LIDRFDEHD---------   51 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhh---------------------------HHhhhhccC---------
Confidence            46789999999999999999999999999987443                           556788898         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ++|..+.|  +|...+|++|+.|..|++|+..+.++...                                      
T Consensus        52 ---GpVRgv~F--H~~qplFVSGGDDykIkVWnYk~rrclft--------------------------------------   88 (1202)
T KOG0292|consen   52 ---GPVRGVDF--HPTQPLFVSGGDDYKIKVWNYKTRRCLFT--------------------------------------   88 (1202)
T ss_pred             ---Cccceeee--cCCCCeEEecCCccEEEEEecccceehhh--------------------------------------
Confidence               99999999  57888999999999999999988765432                                      


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                            + .+|.+.|..+.|++.-.+|+++ +|.+|+||++. .+.++.+       +.+|...
T Consensus        89 ----------------------L-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iav-------ltGHnHY  137 (1202)
T KOG0292|consen   89 ----------------------L-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAV-------LTGHNHY  137 (1202)
T ss_pred             ----------------------h-ccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEE-------EecCceE
Confidence                                  2 7999999999999999999999 99999999999 7778876       7999999


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc----ccccc--------ccccCcccceeccccceEEEEEcc
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR----ILRDA--------AESHGSKSFFTEIIASISDIKFAN  337 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~----~~~~~--------~~~~~~~~~~~~h~~~v~~~~~s~  337 (457)
                      |.|..|+|.. .+++++|.|.+||+||+..-+.......    .+.++        ..+...+..+.||...|+.++|+|
T Consensus       138 VMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  138 VMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             EEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence            9999999988 8999999999999999865321100000    01110        012234567899999999999999


Q ss_pred             CCCeEEEEec-CcEEEEeccCCCC--ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          338 DGQHLLSRDY-MNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       338 ~g~~l~s~~~-~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      .-.+|++|+| ..|++|.+.. .+  .+.+.++|.+.+               .++-|+|...+|++.++|++|+|||+.
T Consensus       217 TlpliVSG~DDRqVKlWrmne-tKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  217 TLPLIVSGADDRQVKLWRMNE-TKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             CcceEEecCCcceeeEEEecc-ccceeehhhhcccCCc---------------ceEEecCccceeEecCCCccEEEEecc
Confidence            9999999976 9999999863 33  356778898876               689999999999999999999999998


Q ss_pred             CCCceeeEEecCCCcceeeeeccCCcceecccccc
Q 012721          415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL  449 (457)
Q Consensus       415 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~  449 (457)
                      .. +.++++.-..+..+.++.||.....+.|..+.
T Consensus       281 kR-t~v~tfrrendRFW~laahP~lNLfAAgHDsG  314 (1202)
T KOG0292|consen  281 KR-TSVQTFRRENDRFWILAAHPELNLFAAGHDSG  314 (1202)
T ss_pred             cc-cceeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence            87 78899998999999999999988887766553

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.2e-34  Score=241.32  Aligned_cols=241  Identities=19%  Similarity=0.372  Sum_probs=200.6

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.++|+++.|+++|.++++|+.+|.|++|+..-..                            +..+++|..       
T Consensus       136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn----------------------------Vk~~~ahh~-------  180 (464)
T KOG0284|consen  136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN----------------------------VKIIQAHHA-------  180 (464)
T ss_pred             hhcccceeEEEccCCCEEEEcCCCceEEecccchhh----------------------------hHHhhHhhh-------
Confidence            499999999999999999999999999999975433                            334555542       


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          +.|.+++|  +|++..|++++.||+|+|||....+...++                                    
T Consensus       181 ----eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~~~kee~vL------------------------------------  218 (464)
T KOG0284|consen  181 ----EAIRDLAF--SPNDSKFLTCSDDGTIKIWDFRMPKEERVL------------------------------------  218 (464)
T ss_pred             ----hhhheecc--CCCCceeEEecCCCeEEEEeccCCchhhee------------------------------------
Confidence                68999999  678889999999999999998876544332                                    


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                               .+|.-.|.+++|+|...+|+++ .|+.|++||.+ .+.++..       +.+|..
T Consensus       219 -------------------------~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr-Sg~cl~t-------lh~HKn  265 (464)
T KOG0284|consen  219 -------------------------RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR-SGSCLAT-------LHGHKN  265 (464)
T ss_pred             -------------------------ccCCCCcceeccCCccceeEEccCCceeEeecCC-Ccchhhh-------hhhccc
Confidence                                     6899999999999999999999 99999999999 6777754       788999


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-eEEEE-e
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-D  346 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~-~  346 (457)
                      .|..+.|+|++ ++|+++|.|..++++|+++.+..    ..             +.+|...|+++.|+|-.. ++++| .
T Consensus       266 tVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl----~~-------------~r~Hkkdv~~~~WhP~~~~lftsgg~  327 (464)
T KOG0284|consen  266 TVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKEL----FT-------------YRGHKKDVTSLTWHPLNESLFTSGGS  327 (464)
T ss_pred             eEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHH----HH-------------hhcchhhheeeccccccccceeeccC
Confidence            99999999999 99999999999999999975432    22             356788999999999654 45555 4


Q ss_pred             cCcEEEEeccCCCCceeEe-eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          347 YMNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       347 ~~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      ||.|..|.+.. .+++..+ .+|...+               ++++|+|-|.+|++|+.|.++++|.-.
T Consensus       328 Dgsvvh~~v~~-~~p~~~i~~AHd~~i---------------wsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  328 DGSVVHWVVGL-EEPLGEIPPAHDGEI---------------WSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             CCceEEEeccc-cccccCCCcccccce---------------eeeeccccceeEeecCCCcceeeeccC
Confidence            69999999974 4444443 3566654               799999999999999999999999754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.8e-32  Score=231.53  Aligned_cols=303  Identities=18%  Similarity=0.264  Sum_probs=239.2

Q ss_pred             hHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCcccee
Q 012721           15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK   94 (457)
Q Consensus        15 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (457)
                      +|.+.+....+...+.|.+.|.++...  +++|++|++||.++||+..+..                            .
T Consensus        88 EYv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~----------------------------~  137 (423)
T KOG0313|consen   88 EYVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS----------------------------I  137 (423)
T ss_pred             EEEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce----------------------------E
Confidence            344555566677888899999999999  8899999999999999987654                            4


Q ss_pred             eeeccCCccccccccccccCcEEEEEEEec-CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccc
Q 012721           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (457)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s-~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (457)
                      .++.||.            ++|.+++|... +....|++++.|.++++|.++.++....                     
T Consensus       138 ~~~~Ght------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~---------------------  184 (423)
T KOG0313|consen  138 KTIVGHT------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK---------------------  184 (423)
T ss_pred             EEEecCC------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh---------------------
Confidence            5788999            88999988632 2234699999999999999988754321                     


Q ss_pred             cccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc-c
Q 012721          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-Q  251 (457)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~  251 (457)
                                                         +++.. .||...|-+++..+++..+++| .|.+|+||+..... .
T Consensus       185 -----------------------------------~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~  228 (423)
T KOG0313|consen  185 -----------------------------------ALKVC-RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEED  228 (423)
T ss_pred             -----------------------------------HHhHh-cccccceeEEEecCCCCeEEeecccceeeecccCCCccc
Confidence                                               11111 5999999999999999999999 99999999943110 0


Q ss_pred             eee----------------eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccccc
Q 012721          252 CFN----------------IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE  315 (457)
Q Consensus       252 ~~~----------------~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~  315 (457)
                      ...                ....+...+.+|.++|.++.|.+.  ..+++++-|.+|+.||+.+++...    ....   
T Consensus       229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~----~~~~---  299 (423)
T KOG0313|consen  229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS----TLTT---  299 (423)
T ss_pred             cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee----eeec---
Confidence            000                000111247899999999999984  689999999999999999986542    2222   


Q ss_pred             ccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEE
Q 012721          316 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  392 (457)
Q Consensus       316 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  392 (457)
                                 ...+.++.++|..++|++|+ |..|++||.+.+.  -...++.+|.+.+               .++.|
T Consensus       300 -----------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkw  353 (423)
T KOG0313|consen  300 -----------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKW  353 (423)
T ss_pred             -----------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hheec
Confidence                       25789999999999999986 5999999998743  2456788999987               58999


Q ss_pred             cCCC-cEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecccccccc
Q 012721          393 SGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR  451 (457)
Q Consensus       393 s~d~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~  451 (457)
                      +|.. .+|++|+.|+++++||+++.+.++..+.+|...|.++.|+-.+.....|..+-.|
T Consensus       354 sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  354 SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLR  413 (423)
T ss_pred             CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEE
Confidence            9965 5678999999999999999977999999999999999999887777776655443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-31  Score=216.54  Aligned_cols=242  Identities=17%  Similarity=0.306  Sum_probs=194.9

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|+..|++++|+|.|++||+|+.|.++.||.-..+                         +++++.+++||+        
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-------------------------efecv~~lEGHE--------  105 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-------------------------EFECVATLEGHE--------  105 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCC-------------------------ceeEEeeeeccc--------
Confidence            49999999999999999999999999999996654                         567899999999        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..|.+++|  +++|.+||++++|+.|-+|.+..+...                                       
T Consensus       106 ----nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEf---------------------------------------  140 (312)
T KOG0645|consen  106 ----NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEF---------------------------------------  140 (312)
T ss_pred             ----cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcE---------------------------------------
Confidence                56999999  799999999999999999998855322                                       


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc--ceeeeeecCCCcccCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDDL  266 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~  266 (457)
                                        .|..++ ++|...|..+.|+|...+|+++ +|++|++|+-....  .+.+       ++.+|
T Consensus       141 ------------------ec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~-------tl~g~  194 (312)
T KOG0645|consen  141 ------------------ECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQ-------TLDGH  194 (312)
T ss_pred             ------------------EEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEE-------EecCc
Confidence                              233333 8999999999999999999999 99999999876222  2333       37899


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  345 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-  345 (457)
                      ...|.+++|++.| ..|++++.|++++||-..+.-        -             ..|...++.+.|. + ..|+++ 
T Consensus       195 ~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~--------~-------------~~~sr~~Y~v~W~-~-~~IaS~g  250 (312)
T KOG0645|consen  195 ENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL--------S-------------GMHSRALYDVPWD-N-GVIASGG  250 (312)
T ss_pred             cceEEEEEecCCC-ceEEEecCCcceEeeeeccCc--------c-------------hhcccceEeeeec-c-cceEecc
Confidence            9999999999999 999999999999999866421        0             1245689999998 4 477776 


Q ss_pred             ecCcEEEEeccCC-CCce-----eEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecC
Q 012721          346 DYMNLKLWDIRMD-STPV-----ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       346 ~~~~i~~wd~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~  414 (457)
                      .|+.|++|.-... ..+.     ..-..|+..               |.++.|.|. ...|++|+.||.|++|.+.
T Consensus       251 gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d---------------VNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  251 GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD---------------VNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCEEEEEEecCCCCCchHHHHHhhhcccccc---------------cceEEEcCCCCCceeecCCCceEEEEEec
Confidence            4699999976521 1111     122344443               369999995 7899999999999999975

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=9e-34  Score=236.70  Aligned_cols=252  Identities=12%  Similarity=0.240  Sum_probs=206.1

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      ..+.|+|+.+.  ...+++|..|.+|+|||..+..                           ++..+.||+         
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHt---------  237 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHT---------  237 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHH---------------------------HHHhhhcCC---------
Confidence            46899999997  6689999999999999987554                           667899999         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         +.|.|+.|    +...+++|+.|.+|++||+++++....                                      
T Consensus       238 ---GSVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~t--------------------------------------  272 (499)
T KOG0281|consen  238 ---GSVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLNT--------------------------------------  272 (499)
T ss_pred             ---CcEEeeec----cceEEEecCCCceEEEEeccCCchhhH--------------------------------------
Confidence               99999999    345999999999999999999865433                                      


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                            + .+|...|..+.|+  ..+++++ .|.++.+||+..+. .+...    ..+.+|...
T Consensus       273 ----------------------l-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps-~it~r----rVLvGHrAa  322 (499)
T KOG0281|consen  273 ----------------------L-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT-DITLR----RVLVGHRAA  322 (499)
T ss_pred             ----------------------H-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch-HHHHH----HHHhhhhhh
Confidence                                  2 6889999999997  4588888 99999999998443 22111    236899999


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~  348 (457)
                      |..+.|+.   ++|++++.|.+|++|++.+.+..    +++             .+|...|.|+.+.  |+++++|+ |.
T Consensus       323 VNvVdfd~---kyIVsASgDRTikvW~~st~efv----Rtl-------------~gHkRGIAClQYr--~rlvVSGSSDn  380 (499)
T KOG0281|consen  323 VNVVDFDD---KYIVSASGDRTIKVWSTSTCEFV----RTL-------------NGHKRGIACLQYR--DRLVVSGSSDN  380 (499)
T ss_pred             eeeecccc---ceEEEecCCceEEEEeccceeee----hhh-------------hcccccceehhcc--CeEEEecCCCc
Confidence            99999875   68999999999999999997544    444             4577889988875  89999996 59


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCce--------e
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--------G  420 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~--------~  420 (457)
                      +|++||+.. +.++..+.+|+..+               .++.|  |.+.|++|+.||+|++||+.++..+        +
T Consensus       381 tIRlwdi~~-G~cLRvLeGHEeLv---------------RciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl  442 (499)
T KOG0281|consen  381 TIRLWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCL  442 (499)
T ss_pred             eEEEEeccc-cHHHHHHhchHHhh---------------hheee--cCceeeeccccceEEEEecccccCCcccccchHH
Confidence            999999986 99999999999886               57888  6788999999999999999887432        3


Q ss_pred             eEEecCCCcceeeee
Q 012721          421 ITVEAGKNENRKPIL  435 (457)
Q Consensus       421 ~~~~~~~~~v~~~~~  435 (457)
                      ..+..|.+.|..+.|
T Consensus       443 ~~lv~hsgRVFrLQF  457 (499)
T KOG0281|consen  443 RTLVEHSGRVFRLQF  457 (499)
T ss_pred             HhhhhccceeEEEee
Confidence            344556666665554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.7e-31  Score=223.38  Aligned_cols=321  Identities=12%  Similarity=0.079  Sum_probs=241.1

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ...|+++|.+++.+|+.+++|||+.|..-.||+..+++                           ...++.+|.      
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---------------------------~~~eltgHK------  106 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---------------------------FAGELTGHK------  106 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc---------------------------ceeEecCCC------
Confidence            34599999999999999999999999999999999887                           456889999      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            +.|+++.|  +.+|.+||+|..+|.|+||...++.....+... ..++.=+.|++. +.++..+          
T Consensus       107 ------DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e-~~dieWl~WHp~-a~illAG----------  166 (399)
T KOG0296|consen  107 ------DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE-VEDIEWLKWHPR-AHILLAG----------  166 (399)
T ss_pred             ------CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEeecc-cCceEEEEeccc-ccEEEee----------
Confidence                  89999999  799999999999999999999998776655411 122223334432 2222211          


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                         ..++.+..|.+...   ...+++ .+|..++++-.|.|+|+.++++ .||+|++||+. .++.+..+  .    ..-
T Consensus       167 ---~~DGsvWmw~ip~~---~~~kv~-~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k-tg~p~~~~--~----~~e  232 (399)
T KOG0296|consen  167 ---STDGSVWMWQIPSQ---ALCKVM-SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK-TGQPLHKI--T----QAE  232 (399)
T ss_pred             ---cCCCcEEEEECCCc---ceeeEe-cCCCCCcccccccCCCceEEEEecCceEEEEecC-CCceeEEe--c----ccc
Confidence               13567888887643   333444 8999999999999999999999 99999999999 45444332  1    111


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEE---EccCCCeEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLL  343 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~s~~g~~l~  343 (457)
                      ....+++.++..+ ..++.|+.++.+++-+..+++....    ...  ..+.   ....+...+.++.   ++..-.+.|
T Consensus       233 ~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~~----~n~--~~~~---l~~~~e~~~esve~~~~ss~lpL~A  302 (399)
T KOG0296|consen  233 GLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVNC----NNG--TVPE---LKPSQEELDESVESIPSSSKLPLAA  302 (399)
T ss_pred             cCcCCcccccccc-ceeEeccCCccEEEEccccceEEEe----cCC--CCcc---ccccchhhhhhhhhcccccccchhh
Confidence            3456788899888 8999999999999999888865421    110  0111   1122333444444   444556677


Q ss_pred             EEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721          344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  422 (457)
Q Consensus       344 s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~  422 (457)
                      +|+ ||+|.|||+.. .++. ..-.|+..+               +.+.|-+ ..+|++++.||.|+.||.++| ..+.+
T Consensus       303 ~G~vdG~i~iyD~a~-~~~R-~~c~he~~V---------------~~l~w~~-t~~l~t~c~~g~v~~wDaRtG-~l~~~  363 (399)
T KOG0296|consen  303 CGSVDGTIAIYDLAA-STLR-HICEHEDGV---------------TKLKWLN-TDYLLTACANGKVRQWDARTG-QLKFT  363 (399)
T ss_pred             cccccceEEEEeccc-chhh-eeccCCCce---------------EEEEEcC-cchheeeccCceEEeeecccc-ceEEE
Confidence            776 59999999974 3443 344466544               7899988 789999999999999999999 89999


Q ss_pred             EecCCCcceeeeeccCCcceec
Q 012721          423 VEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       423 ~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +.||..+|.+++.+|+++...+
T Consensus       364 y~GH~~~Il~f~ls~~~~~vvT  385 (399)
T KOG0296|consen  364 YTGHQMGILDFALSPQKRLVVT  385 (399)
T ss_pred             EecCchheeEEEEcCCCcEEEE
Confidence            9999999999999999876655

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.2e-32  Score=225.54  Aligned_cols=282  Identities=16%  Similarity=0.247  Sum_probs=227.7

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      ....+-|..|||||+||++|+.||-|-+|+..+++..+       .+            .|+--..|.-++         
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK-------DL------------kYQAqd~fMMmd---------  263 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK-------DL------------KYQAQDNFMMMD---------  263 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhh-------hh------------hhhhhcceeecc---------
Confidence            46678999999999999999999999999999887530       00            111122233344         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ++|.|+.|  +.|..++++|+.||.|++|.+.+|.+.                                        
T Consensus       264 ---~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~Cl----------------------------------------  298 (508)
T KOG0275|consen  264 ---DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCL----------------------------------------  298 (508)
T ss_pred             ---cceEEEee--cccHHHhhccCcCCcEEEEEEecchHH----------------------------------------
Confidence               89999999  799999999999999999999988544                                        


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                          +.+...|...|+|+.|+.|+..+.++ .|.++++.-++ .+++++       ++.+|+..
T Consensus       299 --------------------RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LK-------EfrGHsSy  350 (508)
T KOG0275|consen  299 --------------------RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLK-------EFRGHSSY  350 (508)
T ss_pred             --------------------HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHH-------HhcCcccc
Confidence                                33436899999999999999999998 99999999999 677764       37999999


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEec-
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-  347 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~-  347 (457)
                      |+...|.++| ..+++++.||+|++|+.++.++.    .+|+.           .+-..+|.++..-|. -..++.+.. 
T Consensus       351 vn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~----~Tfk~-----------~~~d~~vnsv~~~PKnpeh~iVCNrs  414 (508)
T KOG0275|consen  351 VNEATFTDDG-HHIISASSDGTVKVWHGKTTECL----STFKP-----------LGTDYPVNSVILLPKNPEHFIVCNRS  414 (508)
T ss_pred             ccceEEcCCC-CeEEEecCCccEEEecCcchhhh----hhccC-----------CCCcccceeEEEcCCCCceEEEEcCC
Confidence            9999999999 99999999999999999998655    34433           112357888888775 345555554 


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  427 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  427 (457)
                      ++|++.++.  ++.+..+.........+            .+++.||.|.++++.++|+.++.|.+.+| +...++..|.
T Consensus       415 ntv~imn~q--GQvVrsfsSGkREgGdF------------i~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhE  479 (508)
T KOG0275|consen  415 NTVYIMNMQ--GQVVRSFSSGKREGGDF------------INAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHE  479 (508)
T ss_pred             CeEEEEecc--ceEEeeeccCCccCCce------------EEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeeccc
Confidence            999999985  88888886543322211            58999999999999999999999999999 7889999999


Q ss_pred             CcceeeeeccCCcceec
Q 012721          428 NENRKPILQAAPRARRS  444 (457)
Q Consensus       428 ~~v~~~~~~p~~~~~~~  444 (457)
                      ..+-.++-||.....++
T Consensus       480 kdvIGl~HHPHqNllAs  496 (508)
T KOG0275|consen  480 KDVIGLTHHPHQNLLAS  496 (508)
T ss_pred             ccccccccCcccchhhh
Confidence            99999999998755443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.6e-31  Score=240.25  Aligned_cols=340  Identities=16%  Similarity=0.185  Sum_probs=265.5

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc-CCccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLK  108 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~  108 (457)
                      .-.+.+++++.+||+++|++++..+.+++|++.+++                           ++..++. |+       
T Consensus        60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk---------------------------~irswKa~He-------  105 (775)
T KOG0319|consen   60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGK---------------------------LIRSWKAIHE-------  105 (775)
T ss_pred             cchhhhheeeecCCccEEEEeeccceEEEEEcccch---------------------------HhHhHhhccC-------
Confidence            346789999999999999999999999999999886                           4566776 77       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc-ccccCCCCCceeccC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN-FMNEHNPPSFAHGYH  187 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  187 (457)
                           +||.-++|  +|.+.++++|+.|+.+++||+.++.+...+... ...|+++.|.+.... ++.++.         
T Consensus       106 -----~Pvi~ma~--~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~-gGvVssl~F~~~~~~~lL~sg~---------  168 (775)
T KOG0319|consen  106 -----APVITMAF--DPTGTLLATGGADGRVKVWDIKNGYCTHSFKGH-GGVVSSLLFHPHWNRWLLASGA---------  168 (775)
T ss_pred             -----CCeEEEEE--cCCCceEEeccccceEEEEEeeCCEEEEEecCC-CceEEEEEeCCccchhheeecC---------
Confidence                 99999999  678889999999999999999999877666543 344777777766544 222222         


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC------------------
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI------------------  248 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~------------------  248 (457)
                          .++.+++||++....  |+.+. ..|...|+++++.+|+..++++ .|..+.+||+..                  
T Consensus       169 ----~D~~v~vwnl~~~~t--cl~~~-~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~  241 (775)
T KOG0319|consen  169 ----TDGTVRVWNLNDKRT--CLHTM-ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVR  241 (775)
T ss_pred             ----CCceEEEEEcccCch--HHHHH-HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEE
Confidence                466899999986554  66666 8899999999999999888887 999999999864                  


Q ss_pred             --------------------------------------------------------------------------------
Q 012721          249 --------------------------------------------------------------------------------  248 (457)
Q Consensus       249 --------------------------------------------------------------------------------  248 (457)
                                                                                                      
T Consensus       242 l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG  321 (775)
T KOG0319|consen  242 LREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVG  321 (775)
T ss_pred             echhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcC
Confidence                                                                                            


Q ss_pred             ----------------------CcceeeeeecCC---CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721          249 ----------------------SDQCFNIVDMKP---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  303 (457)
Q Consensus       249 ----------------------~~~~~~~~~~~~---~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~  303 (457)
                                            ....+++++.+-   .-+.+|.+.|.++....+| .+|++|+.|.++++|.++.+...
T Consensus       322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~  400 (775)
T KOG0319|consen  322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSK  400 (775)
T ss_pred             CchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcch
Confidence                                  000001111000   1146788889998866677 89999999999999988443110


Q ss_pred             --------------------------------ccccccccccc---cccCc----ccceeccccceEEEEEccCCCeEEE
Q 012721          304 --------------------------------DHSARILRDAA---ESHGS----KSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       304 --------------------------------~~~~~~~~~~~---~~~~~----~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                                                      +..+++|....   ..+..    ..+...|...|++++++|+.+++|+
T Consensus       401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT  480 (775)
T KOG0319|consen  401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT  480 (775)
T ss_pred             hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence                                            11223332200   00000    1234689999999999999999999


Q ss_pred             Eec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721          345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  423 (457)
Q Consensus       345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~  423 (457)
                      |+. .+.++|+++ ....+.++.+|...+               .++.|+|..+.++|+|.|++|+||.+.+. .+..++
T Consensus       481 ~SqDktaKiW~le-~~~l~~vLsGH~RGv---------------w~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~  543 (775)
T KOG0319|consen  481 GSQDKTAKIWDLE-QLRLLGVLSGHTRGV---------------WCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTF  543 (775)
T ss_pred             cccccceeeeccc-CceEEEEeeCCccce---------------EEEEeccccceeEeccCCceEEEEEeccc-eeeeee
Confidence            985 999999998 489999999999876               79999999999999999999999999999 899999


Q ss_pred             ecCCCcceeeeeccCCcceecc
Q 012721          424 EAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       424 ~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      +||...|..+.|-.++....|+
T Consensus       544 eGH~~aVlra~F~~~~~qliS~  565 (775)
T KOG0319|consen  544 EGHTSAVLRASFIRNGKQLISA  565 (775)
T ss_pred             cCccceeEeeeeeeCCcEEEec
Confidence            9999999999999888877774

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.3e-30  Score=261.51  Aligned_cols=283  Identities=21%  Similarity=0.299  Sum_probs=212.8

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ....|.+.|.+++|+|+|++||+|+.|+.|+||++......             +.      ........+.++      
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-------------~~------~~~~~~~~~~~~------  532 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-------------GR------DIHYPVVELASR------  532 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-------------cc------ccccceEEeccc------
Confidence            34558999999999999999999999999999997642210             00      000011122222      


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ..|.+++|.+ ..+.+|++++.|++|++||+.+++....+                                 
T Consensus       533 -------~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~~~~---------------------------------  571 (793)
T PLN00181        533 -------SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLVTEM---------------------------------  571 (793)
T ss_pred             -------CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEEEEe---------------------------------
Confidence                   5689999963 45779999999999999999876543321                                 


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                                  .+|...|++++|+| ++.+|++| .|+.|++||++ .+..+..+       .
T Consensus       572 ----------------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-~~~~~~~~-------~  615 (793)
T PLN00181        572 ----------------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-QGVSIGTI-------K  615 (793)
T ss_pred             ----------------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-CCcEEEEE-------e
Confidence                                        57999999999997 78899999 99999999998 55555442       3


Q ss_pred             CCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          265 DLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       265 ~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      . ...+.++.|++ ++ .+|++|+.||.|++||++..+..      .          ..+.+|...|.++.|. ++.+|+
T Consensus       616 ~-~~~v~~v~~~~~~g-~~latgs~dg~I~iwD~~~~~~~------~----------~~~~~h~~~V~~v~f~-~~~~lv  676 (793)
T PLN00181        616 T-KANICCVQFPSESG-RSLAFGSADHKVYYYDLRNPKLP------L----------CTMIGHSKTVSYVRFV-DSSTLV  676 (793)
T ss_pred             c-CCCeEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCCcc------c----------eEecCCCCCEEEEEEe-CCCEEE
Confidence            2 35789999965 56 99999999999999999875311      0          1134577899999997 677888


Q ss_pred             EEe-cCcEEEEeccCC-----CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721          344 SRD-YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       344 s~~-~~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                      +++ |+.|++||++..     ..++..+.+|...+               ..++|+|++.+|++|+.|+.|++|+.....
T Consensus       677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---------------~~v~~s~~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK---------------NFVGLSVSDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe---------------eEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence            776 599999999742     35677888887654               578999999999999999999999987552


Q ss_pred             cee------------eEEecCCCcceeeeeccCCcceecc
Q 012721          418 AGG------------ITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       418 ~~~------------~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      ...            .....+...|.+++|+|++.....|
T Consensus       742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~  781 (793)
T PLN00181        742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA  781 (793)
T ss_pred             ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEe
Confidence            110            1123455679999999999877663

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=9.4e-33  Score=220.59  Aligned_cols=275  Identities=15%  Similarity=0.196  Sum_probs=232.6

Q ss_pred             CCCccccCCceEEEEECC---CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCC
Q 012721           25 PDEELQDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (457)
Q Consensus        25 ~~~~~~h~~~V~~~~~s~---~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  101 (457)
                      |...-+|+.+|-.++|||   +|-+|++++.||.--+-+-+++.                           .+.+|.||.
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd---------------------------wigtfeghk   59 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD---------------------------WIGTFEGHK   59 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC---------------------------cEEeeeccC
Confidence            444556999999999987   88899999999987776666555                           678999999


Q ss_pred             ccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (457)
Q Consensus       102 ~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (457)
                                  +.|.+...  +.+...-++++.|-+.++||.-+|..+..                             
T Consensus        60 ------------gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhs-----------------------------   96 (334)
T KOG0278|consen   60 ------------GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHS-----------------------------   96 (334)
T ss_pred             ------------cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhh-----------------------------
Confidence                        88999988  56777778899999999999988865432                             


Q ss_pred             ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                                                       ..|..-|.+++|+.|.++|++| .++.++|||++.....       |
T Consensus        97 ---------------------------------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap-------p  136 (334)
T KOG0278|consen   97 ---------------------------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP-------P  136 (334)
T ss_pred             ---------------------------------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC-------c
Confidence                                             4678889999999999999999 9999999999843332       2


Q ss_pred             CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                      .++.+|.+.|..+.|.... +.|+++..|++||+||.+++...    +.+..              ..+|+++.++++|+
T Consensus       137 ~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v----~sL~~--------------~s~VtSlEvs~dG~  197 (334)
T KOG0278|consen  137 KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEV----QSLEF--------------NSPVTSLEVSQDGR  197 (334)
T ss_pred             hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEE----EEEec--------------CCCCcceeeccCCC
Confidence            4578999999999999887 88999999999999999998654    33333              36899999999999


Q ss_pred             eEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee
Q 012721          341 HLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  420 (457)
Q Consensus       341 ~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~  420 (457)
                      +|..+..+.|.+||... -.+++.+....+.                .+.+++|+..++++|++|..++.||..+|+...
T Consensus       198 ilTia~gssV~Fwdaks-f~~lKs~k~P~nV----------------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~  260 (334)
T KOG0278|consen  198 ILTIAYGSSVKFWDAKS-FGLLKSYKMPCNV----------------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG  260 (334)
T ss_pred             EEEEecCceeEEecccc-ccceeeccCcccc----------------ccccccCCCceEEecCcceEEEEEeccCCceee
Confidence            99998889999999986 6778777766554                589999999999999999999999999995544


Q ss_pred             eEEecCCCcceeeeeccCCcceecc
Q 012721          421 ITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       421 ~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      .-..+|.+||-+|.|+|+|-..++|
T Consensus       261 ~~nkgh~gpVhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  261 SYNKGHFGPVHCVRFSPDGELYASG  285 (334)
T ss_pred             ecccCCCCceEEEEECCCCceeecc
Confidence            4459999999999999999998884

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.9e-31  Score=233.72  Aligned_cols=304  Identities=19%  Similarity=0.274  Sum_probs=228.4

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|+..|+++++.|.|..|++|+.|.+|++||+......                       .+..++++.-+       
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas-----------------------~~~fr~l~P~E-------  213 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS-----------------------MRSFRQLQPCE-------  213 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEeccccccc-----------------------chhhhccCccc-------
Confidence            347889999999999999999999999999999876541                       11222232222       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                          ...|++++|  ++.|..|++.+.....+|+|-...+.....+..                                
T Consensus       214 ----~h~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGD--------------------------------  255 (641)
T KOG0772|consen  214 ----THQINSLQY--SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGD--------------------------------  255 (641)
T ss_pred             ----ccccceeee--cCCCCeEEEEecCcceeEEccCCceeeeeeccc--------------------------------
Confidence                134999999  788889999888889999997765554433211                                


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                             -.|-|+..          .++|...++|.+|+|+ .+.|+++ .|++++|||++......+++..++  ..+.
T Consensus       256 -------QYI~Dm~n----------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~--~~g~  316 (641)
T KOG0772|consen  256 -------QYIRDMYN----------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP--AGGK  316 (641)
T ss_pred             -------hhhhhhhc----------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc--CCCc
Confidence                   11112211          1799999999999995 4566777 999999999997777777765543  3456


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc--ceEEEEEccCCCeEEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLS  344 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s  344 (457)
                      .-.++.++|+++| ++||+|+.||.|.+|+.++....    ..+.          .-.+|..  .|+++.||++|++|++
T Consensus       317 Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~----p~~~----------vk~AH~~g~~Itsi~FS~dg~~LlS  381 (641)
T KOG0772|consen  317 RVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR----PVMK----------VKDAHLPGQDITSISFSYDGNYLLS  381 (641)
T ss_pred             ccCceeeecCCCc-chhhhcccCCceeeeecCCcccc----cceE----------eeeccCCCCceeEEEeccccchhhh
Confidence            6788999999999 99999999999999998654211    1111          1134555  8999999999999999


Q ss_pred             Ee-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC------CCcEEEEecCCCC
Q 012721          345 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVGS  417 (457)
Q Consensus       345 ~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~------dg~i~iw~~~~~~  417 (457)
                      -+ |+++++||++...+++....+-...             |+-+.++||||.++|++|..      .|.+++||..+- 
T Consensus       382 Rg~D~tLKvWDLrq~kkpL~~~tgL~t~-------------~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~-  447 (641)
T KOG0772|consen  382 RGFDDTLKVWDLRQFKKPLNVRTGLPTP-------------FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL-  447 (641)
T ss_pred             ccCCCceeeeeccccccchhhhcCCCcc-------------CCCCccccCCCceEEEecccccCCCCCceEEEEeccce-
Confidence            65 5999999999878888776654432             22268999999999999864      568999998887 


Q ss_pred             ceeeEEecCCCcceeeeeccCCcceeccccc
Q 012721          418 AGGITVEAGKNENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       418 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~  448 (457)
                      ...+.+.-....|..+.|||.-...-.|.++
T Consensus       448 d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd  478 (641)
T KOG0772|consen  448 DTVYKIDISTASVVRCLWHPKLNQIFAGSGD  478 (641)
T ss_pred             eeEEEecCCCceEEEEeecchhhheeeecCC
Confidence            6677777778889999999986555554444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=2.7e-31  Score=218.77  Aligned_cols=307  Identities=17%  Similarity=0.211  Sum_probs=231.1

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|..++++.+|++||.++|||+.|..|+|.|++..-....    ...+.  ....+..|   -.+++|-.|.       
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~----~~em~--~~~~qa~h---PvIRTlYDH~-------  172 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK----PKEMI--SGDTQARH---PVIRTLYDHV-------  172 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc----hhhhc--cCCcccCC---ceEeehhhcc-------
Confidence            34999999999999999999999999999999873221000    00000  00001112   2667777887       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           +.|+++.|  .|....|++++.|++|+++|+..-..++-                                    
T Consensus       173 -----devn~l~F--HPre~ILiS~srD~tvKlFDfsK~saKrA------------------------------------  209 (430)
T KOG0640|consen  173 -----DEVNDLDF--HPRETILISGSRDNTVKLFDFSKTSAKRA------------------------------------  209 (430)
T ss_pred             -----Ccccceee--cchhheEEeccCCCeEEEEecccHHHHHH------------------------------------
Confidence                 78999999  57788999999999999999875432211                                    


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                           .++  .....+|.+++|+|.|.+|+.| +-..+++||++ .-++.-.-.    .-..|.
T Consensus       210 ---------------------~K~--~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~Qcfvsan----Pd~qht  261 (430)
T KOG0640|consen  210 ---------------------FKV--FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSAN----PDDQHT  261 (430)
T ss_pred             ---------------------HHH--hhccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeecC----cccccc
Confidence                                 111  1234589999999999999999 88999999999 555553321    246799


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc-cceEEEEEccCCCeEEEEe
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~  346 (457)
                      +.|+++.+++.+ ++.++++.||.|++||=-++++.    +.+..            .|. ..|.+..|..+|+||++.+
T Consensus       262 ~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~------------AH~gsevcSa~Ftkn~kyiLsSG  324 (430)
T KOG0640|consen  262 GAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCV----RTIGN------------AHGGSEVCSAVFTKNGKYILSSG  324 (430)
T ss_pred             cceeEEEecCCc-cEEEEeccCCcEEeeccccHHHH----HHHHh------------hcCCceeeeEEEccCCeEEeecC
Confidence            999999999999 99999999999999997776544    44433            222 5799999999999999765


Q ss_pred             -cCcEEEEeccCCCCceeEeeeccccc-cccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCCceeeEE
Q 012721          347 -YMNLKLWDIRMDSTPVATFKIHEHLR-PKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITV  423 (457)
Q Consensus       347 -~~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~~~~~~  423 (457)
                       |..+++|.+.+ ++++..+.+..... ...           .+...|+....|++.-.+ .+.+.-||.+++.+.....
T Consensus       325 ~DS~vkLWEi~t-~R~l~~YtGAg~tgrq~~-----------rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s  392 (430)
T KOG0640|consen  325 KDSTVKLWEIST-GRMLKEYTGAGTTGRQKH-----------RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS  392 (430)
T ss_pred             CcceeeeeeecC-CceEEEEecCCcccchhh-----------hhhhhhcCccceEEccccccCceeeccccchhhhhhcc
Confidence             69999999987 89998888753211 000           046778877888877665 5789999999997777777


Q ss_pred             ecCCCcceeeeeccCCcceecccccccccc
Q 012721          424 EAGKNENRKPILQAAPRARRSSLSNLTRGL  453 (457)
Q Consensus       424 ~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~  453 (457)
                      .+|.++++.+.-+|..|....  .+.+++.
T Consensus       393 lgHn~a~R~i~HSP~~p~FmT--csdD~ra  420 (430)
T KOG0640|consen  393 LGHNGAVRWIVHSPVEPAFMT--CSDDFRA  420 (430)
T ss_pred             cCCCCCceEEEeCCCCCceee--eccccee
Confidence            899999999999999999988  4444443

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=6.7e-30  Score=240.13  Aligned_cols=299  Identities=14%  Similarity=0.167  Sum_probs=211.3

Q ss_pred             hHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCcccee
Q 012721           15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK   94 (457)
Q Consensus        15 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (457)
                      +|+++|+.  +...-.|-..|.....++++..+++++.+.....|+..++...       ..+...|-       .....
T Consensus         5 k~rh~~g~--~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v-------~~~~~~G~-------~~~~~   68 (493)
T PTZ00421          5 RFRHTQGV--PARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV-------LKHTDYGK-------LASNP   68 (493)
T ss_pred             cccccccc--cCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEE-------eecccccc-------CCCCC
Confidence            56677765  4444446778888888888777788888888888886554321       00000000       00011


Q ss_pred             eeeccCCccccccccccccCcEEEEEEEecC-CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccc
Q 012721           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (457)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (457)
                      ..+.+|.            +.|.+++|  +| ++++|++++.|++|++||+.++.....                     
T Consensus        69 ~~l~GH~------------~~V~~v~f--sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~---------------------  113 (493)
T PTZ00421         69 PILLGQE------------GPIIDVAF--NPFDPQKLFTASEDGTIMGWGIPEEGLTQN---------------------  113 (493)
T ss_pred             ceEeCCC------------CCEEEEEE--cCCCCCEEEEEeCCCEEEEEecCCCccccc---------------------
Confidence            2467787            89999999  55 778999999999999999976532110                     


Q ss_pred             cccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcc
Q 012721          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ  251 (457)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~  251 (457)
                                                      ...++..+ .+|...|.+++|+|++ ++|+++ .|+.|+|||++ .+.
T Consensus       114 --------------------------------~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~  159 (493)
T PTZ00421        114 --------------------------------ISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGK  159 (493)
T ss_pred             --------------------------------cCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCe
Confidence                                            00122223 7899999999999975 688888 99999999998 455


Q ss_pred             eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc-ce
Q 012721          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SI  330 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v  330 (457)
                      ....       +.+|...|.+++|+|++ .+|++++.|++|++||+++++..    ..+             .+|.+ .+
T Consensus       160 ~~~~-------l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl-------------~~H~~~~~  214 (493)
T PTZ00421        160 AVEV-------IKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSV-------------EAHASAKS  214 (493)
T ss_pred             EEEE-------EcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEE-------------ecCCCCcc
Confidence            4443       57799999999999999 99999999999999999987533    222             23333 34


Q ss_pred             EEEEEccCCCeEEEEe-----cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-C
Q 012721          331 SDIKFANDGQHLLSRD-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-Y  404 (457)
Q Consensus       331 ~~~~~s~~g~~l~s~~-----~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~  404 (457)
                      ..+.|.+++..+++++     |+.|++||++...+++.....+....              +....|++|+.+|++++ .
T Consensus       215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkg  280 (493)
T PTZ00421        215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKG  280 (493)
T ss_pred             eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeC
Confidence            5678899887777532     48999999986455555444332211              13567899999999887 5


Q ss_pred             CCcEEEEecCCCCceeeEEe-cCCCcceeeeeccC
Q 012721          405 SNLLRIFSHGVGSAGGITVE-AGKNENRKPILQAA  438 (457)
Q Consensus       405 dg~i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~p~  438 (457)
                      |+.|++||+.++ ......+ .+..++..++|.|.
T Consensus       281 Dg~Iriwdl~~~-~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        281 EGNIRCFELMNE-RLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CCeEEEEEeeCC-ceEEEeeccCCCCCcceEeccc
Confidence            999999999988 4444443 35567888888875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.98  E-value=9.3e-30  Score=205.47  Aligned_cols=298  Identities=13%  Similarity=0.153  Sum_probs=230.8

Q ss_pred             CCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      |....+|..+++.+.++.+|.+|.+++.|.++.+|-...++                           .+-++.||.   
T Consensus         3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe---------------------------rlGty~GHt---   52 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE---------------------------RLGTYDGHT---   52 (327)
T ss_pred             ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc---------------------------eeeeecCCC---
Confidence            45566799999999999999999999999999999987776                           457899999   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                               +.|.++..  +.+.+++++|+.|.++++||+.+|+.+...+.+  ..|..+.|+.....++.+..      
T Consensus        53 ---------GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~--~~Vk~~~F~~~gn~~l~~tD------  113 (327)
T KOG0643|consen   53 ---------GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN--SPVKRVDFSFGGNLILASTD------  113 (327)
T ss_pred             ---------ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC--CeeEEEeeccCCcEEEEEeh------
Confidence                     99999999  688899999999999999999999988776543  34555555544333222211      


Q ss_pred             ccCCccccccceEEEeccCcc----ccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecC
Q 012721          185 GYHLEWTENMATKIANVGNSV----HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  259 (457)
                         ........+.++++....    ...+...+ ..+...++.+-|.|-+++|++| .||.|.+||.++..+.+..    
T Consensus       114 ---~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s----  185 (327)
T KOG0643|consen  114 ---KQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS----  185 (327)
T ss_pred             ---hhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec----
Confidence               111222367778877433    44555555 5677899999999999999999 9999999999954455543    


Q ss_pred             CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g  339 (457)
                         .+.|...|+.+.++++. .++++++.|.+-++||+++-...    +++..              ..+|++.+++|..
T Consensus       186 ---~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~----Kty~t--------------e~PvN~aaisP~~  243 (327)
T KOG0643|consen  186 ---DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL----KTYTT--------------ERPVNTAAISPLL  243 (327)
T ss_pred             ---hhhhccccccccccCCc-ceEEecccCccceeeeccceeeE----EEeee--------------cccccceeccccc
Confidence               46788999999999999 99999999999999999986554    55554              4689999999988


Q ss_pred             CeEEEEec---CcEEEEeccC-----------CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721          340 QHLLSRDY---MNLKLWDIRM-----------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  405 (457)
Q Consensus       340 ~~l~s~~~---~~i~~wd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  405 (457)
                      .+++.|+.   ..|.--+.+.           ..+.+..+++|-+++               .+++|+|||+..++|++|
T Consensus       244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI---------------NsvAfhPdGksYsSGGED  308 (327)
T KOG0643|consen  244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI---------------NSVAFHPDGKSYSSGGED  308 (327)
T ss_pred             ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc---------------ceeEECCCCcccccCCCC
Confidence            88776542   2332222221           024566778888876               599999999999999999


Q ss_pred             CcEEEEecCCC
Q 012721          406 NLLRIFSHGVG  416 (457)
Q Consensus       406 g~i~iw~~~~~  416 (457)
                      |.|++.-+...
T Consensus       309 G~VR~h~Fd~~  319 (327)
T KOG0643|consen  309 GYVRLHHFDSN  319 (327)
T ss_pred             ceEEEEEeccc
Confidence            99999877644

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=4.5e-30  Score=242.46  Aligned_cols=246  Identities=20%  Similarity=0.350  Sum_probs=203.0

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .+|...|++++|+|+++++++|+.|++|+|||+....                          ..+.++++|.       
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--------------------------~~~~~l~gH~-------  246 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--------------------------RNLKTLKGHS-------  246 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--------------------------eEEEEecCCC-------
Confidence            5699999999999999999999999999999994332                          2678899999       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|++++|  +++++++++|+.|++|++||+.++++...+                                   
T Consensus       247 -----~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-----------------------------------  284 (456)
T KOG0266|consen  247 -----TYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRTGECVRKL-----------------------------------  284 (456)
T ss_pred             -----CceEEEEe--cCCCCEEEEecCCCcEEEEeccCCeEEEee-----------------------------------
Confidence                 88999999  688899999999999999999997665442                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc--eeeeeecCCCcccC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD  265 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~  265 (457)
                                                .+|...|++++|++++.+|+++ .|+.|++||+. .+.  +...       +.+
T Consensus       285 --------------------------~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~-~~~~~~~~~-------~~~  330 (456)
T KOG0266|consen  285 --------------------------KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE-TGSKLCLKL-------LSG  330 (456)
T ss_pred             --------------------------eccCCceEEEEECCCCCEEEEcCCCccEEEEECC-CCceeeeec-------ccC
Confidence                                      6899999999999999999999 99999999999 454  2332       333


Q ss_pred             CCC--ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          266 LTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       266 ~~~--~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      +..  .++++.|+|++ .+++++..|+.+++||++.+...    ..+..|...          ...+.+...++.+++++
T Consensus       331 ~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~i~  395 (456)
T KOG0266|consen  331 AENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSV----GTYTGHSNL----------VRCIFSPTLSTGGKLIY  395 (456)
T ss_pred             CCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcce----eeecccCCc----------ceeEecccccCCCCeEE
Confidence            433  59999999999 99999999999999999987544    333332111          01344556678999999


Q ss_pred             EEec-CcEEEEeccCCCCceeEeeec-cccccccccccCCCCccccceEEEcCCCcEEEEEe--CCCcEEEEecC
Q 012721          344 SRDY-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG  414 (457)
Q Consensus       344 s~~~-~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~iw~~~  414 (457)
                      +|+. +.|++||+.+ +..+..+.+| ...+               ..+.++|...++++++  .|+.+++|..+
T Consensus       396 sg~~d~~v~~~~~~s-~~~~~~l~~h~~~~~---------------~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  396 SGSEDGSVYVWDSSS-GGILQRLEGHSKAAV---------------SDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEeCCceEEEEeCCc-cchhhhhcCCCCCce---------------eccccCCCcCeeeecCcCCCceEEEecCC
Confidence            9975 9999999986 7888888888 4443               5799999999999998  68999999864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=204.36  Aligned_cols=271  Identities=16%  Similarity=0.206  Sum_probs=217.2

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|...|.+++|+-+|..||+|+.|+++++|+++.....                         .....++|.       
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-------------------------~~~~~~gh~-------   64 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-------------------------KELVYRGHT-------   64 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-------------------------hhhcccCCC-------
Confidence            448899999999999999999999999999999876532                         223467787       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           +.|-.++|.| +...+|++++.|.+|++||++.+++...+..                                 
T Consensus        65 -----~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i~~---------------------------------  105 (313)
T KOG1407|consen   65 -----DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARIET---------------------------------  105 (313)
T ss_pred             -----cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEeec---------------------------------
Confidence                 7899999985 5566999999999999999999887655431                                 


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                   ...-.-+.|+|+|++++.+ .|..|.+.|.+ ..+....        ....
T Consensus       106 -----------------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r-~~~~~~~--------~~~~  147 (313)
T KOG1407|consen  106 -----------------------------KGENINITWSPDGEYIAVGNKDDRITFIDAR-TYKIVNE--------EQFK  147 (313)
T ss_pred             -----------------------------cCcceEEEEcCCCCEEEEecCcccEEEEEec-ccceeeh--------hccc
Confidence                                         1122357899999999999 99999999998 3433332        2233


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-  346 (457)
                      ..+..++|+-++ .+++.....|.|.|.....-+..                 ..+.+|.....|+.|+|+|+|+|+|+ 
T Consensus       148 ~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv-----------------~si~AH~snCicI~f~p~GryfA~GsA  209 (313)
T KOG1407|consen  148 FEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPV-----------------QSIKAHPSNCICIEFDPDGRYFATGSA  209 (313)
T ss_pred             ceeeeeeecCCC-CEEEEecCCceEEEEeccccccc-----------------cccccCCcceEEEEECCCCceEeeccc
Confidence            567788898776 77777777799999877653311                 22466788999999999999999997 


Q ss_pred             cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      |-.+.+||++. --+++.+..++-++               ..++||-||++||+|++|..|-|=++++|. ....+ .+
T Consensus       210 DAlvSLWD~~E-LiC~R~isRldwpV---------------RTlSFS~dg~~lASaSEDh~IDIA~vetGd-~~~eI-~~  271 (313)
T KOG1407|consen  210 DALVSLWDVDE-LICERCISRLDWPV---------------RTLSFSHDGRMLASASEDHFIDIAEVETGD-RVWEI-PC  271 (313)
T ss_pred             cceeeccChhH-hhhheeeccccCce---------------EEEEeccCcceeeccCccceEEeEecccCC-eEEEe-ec
Confidence            59999999974 67788888887765               789999999999999999999999999993 33433 47


Q ss_pred             CCcceeeeeccCCcceec
Q 012721          427 KNENRKPILQAAPRARRS  444 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~  444 (457)
                      .+|...|+|||..+..+.
T Consensus       272 ~~~t~tVAWHPk~~LLAy  289 (313)
T KOG1407|consen  272 EGPTFTVAWHPKRPLLAY  289 (313)
T ss_pred             cCCceeEEecCCCceeeE
Confidence            899999999999987776

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.8e-30  Score=222.82  Aligned_cols=303  Identities=16%  Similarity=0.233  Sum_probs=230.8

Q ss_pred             ccccccccccchhhHHhhhcCCCCCCccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhc
Q 012721            2 ILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ   80 (457)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   80 (457)
                      .+.+.+.++..-|+--..     +.. ....+.|++++|+|... -+|+.+. -.+.||+..+....             
T Consensus         2 ~~~~~~t~e~~~w~~~~~-----~~~-~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~-------------   61 (487)
T KOG0310|consen    2 ALPQSETPEIRYWRQETF-----PPV-HKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR-------------   61 (487)
T ss_pred             CCCcCCCccchhhhhhcc-----ccc-ccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-------------
Confidence            344555555555643221     111 22357999999999553 2444443 46999998766532             


Q ss_pred             ccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCc
Q 012721           81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF  160 (457)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~  160 (457)
                                    .++....            ..|.++.|  -.||.++++|...|.|+++|+.+...           
T Consensus        62 --------------k~~srFk------------~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~i-----------  102 (487)
T KOG0310|consen   62 --------------KTFSRFK------------DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVI-----------  102 (487)
T ss_pred             --------------hhHHhhc------------cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHH-----------
Confidence                          2233333            77999999  58999999999999999999655322           


Q ss_pred             eeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CC
Q 012721          161 VSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DD  238 (457)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d  238 (457)
                                                                       ++.+ .+|+.+|..+.|+|++ ..+++| +|
T Consensus       103 -------------------------------------------------LR~~-~ah~apv~~~~f~~~d~t~l~s~sDd  132 (487)
T KOG0310|consen  103 -------------------------------------------------LRQL-YAHQAPVHVTKFSPQDNTMLVSGSDD  132 (487)
T ss_pred             -------------------------------------------------HHHH-hhccCceeEEEecccCCeEEEecCCC
Confidence                                                             2222 7899999999999955 455667 89


Q ss_pred             CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccC
Q 012721          239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  318 (457)
Q Consensus       239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      +.+++||+. .... +.      .+.+|.+.|.|.+|+|-.+.++++|+.||.|++||++....     .+.+       
T Consensus       133 ~v~k~~d~s-~a~v-~~------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-----~v~e-------  192 (487)
T KOG0310|consen  133 KVVKYWDLS-TAYV-QA------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-----RVVE-------  192 (487)
T ss_pred             ceEEEEEcC-CcEE-EE------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-----eeEE-------
Confidence            999999998 3332 22      37899999999999998767999999999999999998521     2222       


Q ss_pred             cccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcE
Q 012721          319 SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  398 (457)
Q Consensus       319 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~  398 (457)
                           -.|..+|..+.+-|.|..|++++.+.|++||+..+++.+..+..|...+               +++++..++..
T Consensus       193 -----lnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~r  252 (487)
T KOG0310|consen  193 -----LNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTR  252 (487)
T ss_pred             -----ecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceE---------------EEEEeecCCce
Confidence                 2467899999999999999999989999999987677777776677655               89999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecccccccccccc
Q 012721          399 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR  455 (457)
Q Consensus       399 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~  455 (457)
                      |++|+-|+.|++||+.+- +.... -.-.+||-+++.+|+.....-|++|..-..||
T Consensus       253 LlS~sLD~~VKVfd~t~~-Kvv~s-~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  253 LLSGSLDRHVKVFDTTNY-KVVHS-WKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             EeecccccceEEEEccce-EEEEe-eecccceeeEEecCCCceEEEecccceeeeeh
Confidence            999999999999996655 33333 45689999999999999999999998765553

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.7e-30  Score=205.71  Aligned_cols=244  Identities=19%  Similarity=0.329  Sum_probs=199.0

Q ss_pred             cCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           31 DVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        31 h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      -.+.+..++|+++. +.+++++.||+++|||+....                          .++..++.|.        
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------------------------~Pi~~~kEH~--------  104 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------------------------KPIHKFKEHK--------  104 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------------------------cchhHHHhhh--------
Confidence            36889999999954 788899999999999954332                          2677889998        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..|.++.|.+ ..+..++++|.|++|++|+...++.+..                                     
T Consensus       105 ----~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-------------------------------------  142 (311)
T KOG0277|consen  105 ----REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQT-------------------------------------  142 (311)
T ss_pred             ----hheEEecccc-ccceeEEeeccCCceEeecCCCCcceEe-------------------------------------
Confidence                6699999963 4567888899999999999877654432                                     


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                             + .+|...|+...|+| ..+.++++ .|+.+++||++..++...        ++.|.
T Consensus       143 -----------------------f-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~  190 (311)
T KOG0277|consen  143 -----------------------F-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHN  190 (311)
T ss_pred             -----------------------e-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEecc
Confidence                                   2 78999999999999 57788888 999999999997766554        46788


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEEe
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~  346 (457)
                      ..|.|+.|+.-..+++++|+.|+.|+.||+++-+.     .++           .+.+|.-.|..++|||.. ..||+++
T Consensus       191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-----pl~-----------eL~gh~~AVRkvk~Sph~~~lLaSas  254 (311)
T KOG0277|consen  191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-----PLF-----------ELNGHGLAVRKVKFSPHHASLLASAS  254 (311)
T ss_pred             ceeEeecccccCCcEEEecCCCceEEEEehhhccc-----cce-----------eecCCceEEEEEecCcchhhHhhhcc
Confidence            99999999987768999999999999999998541     111           246788899999999974 5677888


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEec
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~  413 (457)
                      . -++++||...+...+.++..|...+               ..+.||+ ++.++|+.+.|+.++||+-
T Consensus       255 YDmT~riw~~~~~ds~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  255 YDMTVRIWDPERQDSAIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccceEEecccccchhhhhhhhccceEE---------------eccccccccCceeeecccccceeeecc
Confidence            5 9999999986566777777787765               5788887 5789999999999999984

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.4e-30  Score=204.95  Aligned_cols=231  Identities=19%  Similarity=0.227  Sum_probs=188.7

Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                      ++.+..|+|+++. .+.+++++.||++++||....                                             
T Consensus        60 ~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~---------------------------------------------   93 (311)
T KOG0277|consen   60 EDGLFDVAWSENH-ENQVIAASGDGSLRLFDLTMP---------------------------------------------   93 (311)
T ss_pred             ccceeEeeecCCC-cceEEEEecCceEEEeccCCC---------------------------------------------
Confidence            3789999997533 458889999999999994321                                             


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                    ..+++.+ +.|..+|.++.|++ +.+.++++ .|++|++|+.. ....+++       +.+|...|
T Consensus        94 --------------s~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~T-------f~gh~~~I  150 (311)
T KOG0277|consen   94 --------------SKPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQT-------FNGHNSCI  150 (311)
T ss_pred             --------------CcchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEe-------ecCCccEE
Confidence                          1334444 78999999999998 56667777 99999999998 6666765       78999999


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEEe-cC
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YM  348 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~-~~  348 (457)
                      ....|+|..+++++++|.|+++++||++.....    .             .+..|...|.++.|+.-. ..|++|+ |+
T Consensus       151 y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----~-------------~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~  213 (311)
T KOG0277|consen  151 YQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----M-------------SIEAHNSEILCCDWSKYNHNVLATGGVDN  213 (311)
T ss_pred             EEEecCCCCCCeEEEccCCceEEEEEecCCCce----e-------------EEEeccceeEeecccccCCcEEEecCCCc
Confidence            999999988899999999999999999874211    1             135577889999999854 5556665 59


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  427 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  427 (457)
                      .|+.||+++-..++..+.+|.-.+               ..+.|||. ...||+++.|-+++|||...+...+.+..-|.
T Consensus       214 ~vr~wDir~~r~pl~eL~gh~~AV---------------Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht  278 (311)
T KOG0277|consen  214 LVRGWDIRNLRTPLFELNGHGLAV---------------RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT  278 (311)
T ss_pred             eEEEEehhhccccceeecCCceEE---------------EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence            999999998788899999998766               78999997 56899999999999999997767778888999


Q ss_pred             CcceeeeeccCCcceec
Q 012721          428 NENRKPILQAAPRARRS  444 (457)
Q Consensus       428 ~~v~~~~~~p~~~~~~~  444 (457)
                      .-+..+.|++-.+....
T Consensus       279 EFv~g~Dws~~~~~~vA  295 (311)
T KOG0277|consen  279 EFVCGLDWSLFDPGQVA  295 (311)
T ss_pred             eEEeccccccccCceee
Confidence            99999999987655443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=7.6e-30  Score=214.04  Aligned_cols=241  Identities=15%  Similarity=0.250  Sum_probs=210.8

Q ss_pred             cCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeee
Q 012721           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (457)
Q Consensus        86 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  165 (457)
                      .+|..|++.+.+++|.            +.|.++++  .|.++.|++|+.|++|+|||+.+|+++..+            
T Consensus       136 eWHapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lkltl------------  189 (460)
T KOG0285|consen  136 EWHAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLTL------------  189 (460)
T ss_pred             cccCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEee------------
Confidence            6788899999999999            89999999  677889999999999999999999876553            


Q ss_pred             eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEE
Q 012721          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (457)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iw  244 (457)
                                                                       .+|-..|..+++++...+++++ .|+.|+.|
T Consensus       190 -------------------------------------------------tGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  190 -------------------------------------------------TGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             -------------------------------------------------cchhheeeeeeecccCceEEEecCCCeeEEE
Confidence                                                             6888899999999999999999 99999999


Q ss_pred             EcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (457)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (457)
                      |++ ..+.++.       +.+|-..|.|++.+|.- ..|++|+.|.++++||+++....    .             .+.
T Consensus       221 DLe-~nkvIR~-------YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V----~-------------~l~  274 (460)
T KOG0285|consen  221 DLE-YNKVIRH-------YHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV----H-------------VLS  274 (460)
T ss_pred             ech-hhhhHHH-------hccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE----E-------------Eec
Confidence            999 5666643       68999999999999998 99999999999999999996432    2             246


Q ss_pred             ccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721          325 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       325 ~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                      +|...|.++.+.|-...+++|+ |++|++||++. ++....+..|...+               .+++.+|....+|+++
T Consensus       275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksv---------------ral~lhP~e~~fASas  338 (460)
T KOG0285|consen  275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSV---------------RALCLHPKENLFASAS  338 (460)
T ss_pred             CCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeeccccee---------------eEEecCCchhhhhccC
Confidence            7889999999999877888887 59999999986 88888888887765               6899999999999999


Q ss_pred             CCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          404 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       404 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      .|. |+-|++..| .....+.+|.+-+++++.+.|+-....|
T Consensus       339 ~dn-ik~w~~p~g-~f~~nlsgh~~iintl~~nsD~v~~~G~  378 (460)
T KOG0285|consen  339 PDN-IKQWKLPEG-EFLQNLSGHNAIINTLSVNSDGVLVSGG  378 (460)
T ss_pred             Ccc-ceeccCCcc-chhhccccccceeeeeeeccCceEEEcC
Confidence            875 899999999 6667799999999999999988766553

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2.2e-30  Score=216.55  Aligned_cols=237  Identities=19%  Similarity=0.345  Sum_probs=193.7

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..+|+++|.|+.|.  .+.|++|+.|.+|+|||+++++.                           +.++-+|.      
T Consensus       233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~---------------------------l~tlihHc------  277 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP---------------------------LNTLIHHC------  277 (499)
T ss_pred             hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch---------------------------hhHHhhhc------
Confidence            34699999999998  67999999999999999999884                           46788888      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            +.|..+.|   .+| ++++++.|.+|.+||+....-                                      
T Consensus       278 ------eaVLhlrf---~ng-~mvtcSkDrsiaVWdm~sps~--------------------------------------  309 (499)
T KOG0281|consen  278 ------EAVLHLRF---SNG-YMVTCSKDRSIAVWDMASPTD--------------------------------------  309 (499)
T ss_pred             ------ceeEEEEE---eCC-EEEEecCCceeEEEeccCchH--------------------------------------
Confidence                  88999999   334 999999999999999876421                                      


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                         ..+.+++ .+|...|+.+.|+  .++++++ .|.+|++|++. ..+.+++       +.+|
T Consensus       310 -------------------it~rrVL-vGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s-t~efvRt-------l~gH  359 (499)
T KOG0281|consen  310 -------------------ITLRRVL-VGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS-TCEFVRT-------LNGH  359 (499)
T ss_pred             -------------------HHHHHHH-hhhhhheeeeccc--cceEEEecCCceEEEEecc-ceeeehh-------hhcc
Confidence                               1233333 7999999999996  5599999 99999999998 6777765       7899


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ...|.|+.+.  + +++++|+.|.+|++||+..|++.    +++++             |..-|.++.|.  .+.|++|.
T Consensus       360 kRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cL----RvLeG-------------HEeLvRciRFd--~krIVSGa  417 (499)
T KOG0281|consen  360 KRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACL----RVLEG-------------HEELVRCIRFD--NKRIVSGA  417 (499)
T ss_pred             cccceehhcc--C-eEEEecCCCceEEEEeccccHHH----HHHhc-------------hHHhhhheeec--Cceeeecc
Confidence            9999988865  4 89999999999999999998765    55554             67789999996  67899987


Q ss_pred             c-CcEEEEeccCCCC--------ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          347 Y-MNLKLWDIRMDST--------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      . |+|++||+.....        ++..+..|.+.+               +.+.|  |...|++.+.|.+|.|||+.++
T Consensus       418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRV---------------FrLQF--D~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRV---------------FRLQF--DEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             ccceEEEEecccccCCcccccchHHHhhhhcccee---------------EEEee--cceEEEeccCCCeEEEEEcCCC
Confidence            5 9999999975322        233344555543               57777  7788999999999999999988

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.4e-28  Score=202.06  Aligned_cols=283  Identities=17%  Similarity=0.208  Sum_probs=218.1

Q ss_pred             cCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           31 DVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        31 h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      -.+.|.+|+||| ...+++.|+-||+||+|+++.....                         .-+....|.        
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-------------------------~~ka~~~~~--------   72 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-------------------------VPKAQQSHD--------   72 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcc-------------------------cchhhhccC--------
Confidence            468999999999 5677778999999999999874321                         002334455        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ++|.+++|  +.+|..+++|+.|+.+++||+.+++...+                                     
T Consensus        73 ----~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v-------------------------------------  109 (347)
T KOG0647|consen   73 ----GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQV-------------------------------------  109 (347)
T ss_pred             ----CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeee-------------------------------------
Confidence                99999999  78999999999999999999999866543                                     


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                               ..|..+|.++.|-+..  ..|++| .|++|+.||.+ ....+..+.+        
T Consensus       110 -------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R-~~~pv~t~~L--------  155 (347)
T KOG0647|consen  110 -------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR-SSNPVATLQL--------  155 (347)
T ss_pred             -------------------------eecccceeEEEEecCCCcceeEecccccceeecccC-CCCeeeeeec--------
Confidence                                     5799999999997654  489999 99999999999 4545544332        


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      .+.++++..-  . .+++.+..+..|.+|+++++.      ..++. ...|.        .-.+.+++..++.+..+.|+
T Consensus       156 PeRvYa~Dv~--~-pm~vVata~r~i~vynL~n~~------te~k~-~~SpL--------k~Q~R~va~f~d~~~~alGs  217 (347)
T KOG0647|consen  156 PERVYAADVL--Y-PMAVVATAERHIAVYNLENPP------TEFKR-IESPL--------KWQTRCVACFQDKDGFALGS  217 (347)
T ss_pred             cceeeehhcc--C-ceeEEEecCCcEEEEEcCCCc------chhhh-hcCcc--------cceeeEEEEEecCCceEeee
Confidence            3566666543  2 678888999999999998763      22222 11121        24588999988887778777


Q ss_pred             -cCcEEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          347 -YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       347 -~~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                       +|.+-+..++.. .+.-..++.|.....      -.+.++.|.+++|+|.-..|+|++.||++.+||-+.. ..+...+
T Consensus       218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~  290 (347)
T KOG0647|consen  218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNS------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSE  290 (347)
T ss_pred             ecceEEEEecCCCCccCceeEEEeccCCC------CCCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhccC
Confidence             499999988751 244567777765321      1235788899999999999999999999999998877 6788889


Q ss_pred             cCCCcceeeeeccCCcceeccccc
Q 012721          425 AGKNENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       425 ~~~~~v~~~~~~p~~~~~~~~~~~  448 (457)
                      .|..||++-.|+.+|...+-.+++
T Consensus       291 ~~~qpItcc~fn~~G~ifaYA~gY  314 (347)
T KOG0647|consen  291 THPQPITCCSFNRNGSIFAYALGY  314 (347)
T ss_pred             cCCCccceeEecCCCCEEEEEeec
Confidence            999999999999999887765554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.4e-28  Score=224.92  Aligned_cols=352  Identities=16%  Similarity=0.177  Sum_probs=246.1

Q ss_pred             CCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      +.+...|..+|+++.|+..|..||+|+.|+.|.+||+-...-                           ...++||.   
T Consensus       100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G---------------------------l~rL~GHk---  149 (888)
T KOG0306|consen  100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG---------------------------LFRLRGHK---  149 (888)
T ss_pred             eeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee---------------------------eEEeecch---
Confidence            344556999999999999999999999999999999875542                           35789999   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecC--------------------CCceeee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH--------------------FPFVSSE  164 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~--------------------~~~~~~~  164 (457)
                               +.|+..-|  ..+.+.+++.+.|+.|++||+.+..+..+...+.                    .-.|..+
T Consensus       150 ---------d~iT~~~F--~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L  218 (888)
T KOG0306|consen  150 ---------DSITQALF--LNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL  218 (888)
T ss_pred             ---------HHHhHHhc--cCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence                     88999999  4567799999999999999999876654432211                    1112333


Q ss_pred             eeccccc------------cccccCCCCCc--------------------------------------------------
Q 012721          165 NTLLAEK------------NFMNEHNPPSF--------------------------------------------------  182 (457)
Q Consensus       165 ~~~~~~~------------~~~~~~~~~~~--------------------------------------------------  182 (457)
                      +|..++.            .+.........                                                  
T Consensus       219 ~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e  298 (888)
T KOG0306|consen  219 AFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE  298 (888)
T ss_pred             ecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc
Confidence            3333321            00000000000                                                  


Q ss_pred             ----------------------------eeccCCcc------ccccceEEEeccCccc--cccc---eeeccCCCCCeeE
Q 012721          183 ----------------------------AHGYHLEW------TENMATKIANVGNSVH--ARCQ---KVYPHAHDFNINS  223 (457)
Q Consensus       183 ----------------------------~~~~~~~~------~~~~~i~~~~~~~~~~--~~~~---~~~~~~h~~~v~~  223 (457)
                                                  .+.+++.-      ..+..+..+.++....  .++.   ..-..+|...|.+
T Consensus       299 ~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRs  378 (888)
T KOG0306|consen  299 NEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRS  378 (888)
T ss_pred             cccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeE
Confidence                                        00000000      0111223333332110  1111   1223689999999


Q ss_pred             EEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeee-----------------------------cCC----CcccCCCCce
Q 012721          224 ISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-----------------------------MKP----SNMDDLTEVI  270 (457)
Q Consensus       224 ~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-----------------------------~~~----~~~~~~~~~i  270 (457)
                      ++++.+...+++|..+.+++|+.. ..++++++.                             +..    .+.++|.+.|
T Consensus       379 l~vS~d~~~~~Sga~~SikiWn~~-t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI  457 (888)
T KOG0306|consen  379 LCVSSDSILLASGAGESIKIWNRD-TLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI  457 (888)
T ss_pred             EEeecCceeeeecCCCcEEEEEcc-CcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence            999999988888899999999998 444444322                             111    1246899999


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeec-cccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~  348 (457)
                      ++++..||+ ..+++|+.|.+|++||..-..... ...+.+..+      ....-.-...|.++.+||||++||.+- |+
T Consensus       458 Wsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~------~~rtLel~ddvL~v~~Spdgk~LaVsLLdn  530 (888)
T KOG0306|consen  458 WSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK------HTRTLELEDDVLCVSVSPDGKLLAVSLLDN  530 (888)
T ss_pred             eeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeec------cceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence            999999999 999999999999999986432100 000111110      001112246799999999999999885 69


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  428 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  428 (457)
                      +|++|-+++ -+..-.+.+|.-++               +++..|||++.++|||.|..|+||-++=| .+...+-+|..
T Consensus       531 TVkVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdD  593 (888)
T KOG0306|consen  531 TVKVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDD  593 (888)
T ss_pred             eEEEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccC
Confidence            999999986 77788888999876               79999999999999999999999999999 78899999999


Q ss_pred             cceeeeeccCCcce
Q 012721          429 ENRKPILQAAPRAR  442 (457)
Q Consensus       429 ~v~~~~~~p~~~~~  442 (457)
                      .|.+|.|-|.....
T Consensus       594 Svm~V~F~P~~~~F  607 (888)
T KOG0306|consen  594 SVMSVQFLPKTHLF  607 (888)
T ss_pred             ceeEEEEcccceeE
Confidence            99999999965443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=3.5e-29  Score=211.65  Aligned_cols=273  Identities=18%  Similarity=0.260  Sum_probs=201.2

Q ss_pred             ccccCCceEEEEECCCC---CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           28 ELQDVDIVSAIEFDKTG---DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~---~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      ..+|+++|.+++|-...   ..|++++.|.++++|..+.++..                       .+.+..-+||.   
T Consensus       140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-----------------------~~~~~~~~GHk---  193 (423)
T KOG0313|consen  140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-----------------------VKALKVCRGHK---  193 (423)
T ss_pred             EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-----------------------hhHHhHhcccc---
Confidence            44699999988886533   35999999999999999877642                       11222334787   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                               .+|-+|+.  .++|..+++|+.|.+|++|+................          .+             
T Consensus       194 ---------~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r----------rk-------------  239 (423)
T KOG0313|consen  194 ---------RSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR----------RK-------------  239 (423)
T ss_pred             ---------cceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhh----------hh-------------
Confidence                     89999998  689999999999999999994432211111100000          00             


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                                 .. -.........++..+ .+|..+|.++.|++ ...++++ .|.+|+.||+.+.+....+.       
T Consensus       240 -----------~~-~~~~~~~~r~P~vtl-~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-------  298 (423)
T KOG0313|consen  240 -----------KQ-KREKEGGTRTPLVTL-EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-------  298 (423)
T ss_pred             -----------hh-hhhhcccccCceEEe-cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-------
Confidence                       00 000001122333334 89999999999997 5667777 99999999999544433321       


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                        ....+++++.+|.. .+|++|+.|..|++||.+++.              +......+.+|...|.++.|+|...+++
T Consensus       299 --~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~--------------gs~v~~s~~gH~nwVssvkwsp~~~~~~  361 (423)
T KOG0313|consen  299 --TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGD--------------GSVVSQSLIGHKNWVSSVKWSPTNEFQL  361 (423)
T ss_pred             --cCcceeEeeccccc-ceeeecCCCCceeecCCCCCC--------------CceeEEeeecchhhhhheecCCCCceEE
Confidence              33678999999987 999999999999999999863              2233445788999999999999876655


Q ss_pred             -EEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          344 -SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       344 -s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                       +++ |+++++||+++...++..+.+|...+               +++.|+ ++.+|++|+.|.+|+|+.-.
T Consensus       362 ~S~S~D~t~klWDvRS~k~plydI~~h~DKv---------------l~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  362 VSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV---------------LSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEEecCCeEEEEEeccCCCcceeeccCCceE---------------EEEecc-CCceEEeccCcceEEEeccc
Confidence             666 49999999998666999999998765               789997 66789999999999998754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.8e-29  Score=224.89  Aligned_cols=240  Identities=18%  Similarity=0.286  Sum_probs=202.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc-CCccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL  110 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~  110 (457)
                      .+.|+++.|+++|.+||+|..+|.|.|||....+.                           +..+.+ |.         
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~---------------------------~~~~~~~h~---------  260 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK---------------------------TRTLRGSHA---------  260 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc---------------------------cccccCCcC---------
Confidence            68999999999999999999999999999987664                           345666 77         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ..|-+++|  .  +..+.+|+.|+.|..+|++..+....                                      
T Consensus       261 ---~rvg~laW--~--~~~lssGsr~~~I~~~dvR~~~~~~~--------------------------------------  295 (484)
T KOG0305|consen  261 ---SRVGSLAW--N--SSVLSSGSRDGKILNHDVRISQHVVS--------------------------------------  295 (484)
T ss_pred             ---ceeEEEec--c--CceEEEecCCCcEEEEEEecchhhhh--------------------------------------
Confidence               88999999  3  56888999999999999987643211                                      


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                            .+.+|...|..++|++|+.++|+| .|+.+.|||.......+.        +..|.+.
T Consensus       296 ----------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~--------~~~H~aA  345 (484)
T KOG0305|consen  296 ----------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT--------FTEHTAA  345 (484)
T ss_pred             ----------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE--------Eecccee
Confidence                                  027899999999999999999999 999999999963333332        5789999


Q ss_pred             eEEEEEecCCccEEEEEc--cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-e
Q 012721          270 ITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D  346 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~--~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~  346 (457)
                      |.+++|+|....+||+|+  .|+.|++||..+++..    .....              .+.|.+|.|++..+-|+++ +
T Consensus       346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG  407 (484)
T KOG0305|consen  346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHG  407 (484)
T ss_pred             eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecC
Confidence            999999998878999986  7999999999998655    22222              3789999999998777765 2


Q ss_pred             --cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          347 --YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       347 --~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                        ++.|.||+..+ .+.+..+.+|...+               ..++++|||..|++|+.|.++++|++-..
T Consensus       408 ~s~n~i~lw~~ps-~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  408 YSENQITLWKYPS-MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCCcEEEEeccc-cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcEEeccccCC
Confidence              38999999986 78899999999876               79999999999999999999999998764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-28  Score=227.49  Aligned_cols=251  Identities=16%  Similarity=0.257  Sum_probs=200.3

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.++|+.++|+|++.++++|+.|..|++|+..+.+                           ++-++.||.       
T Consensus        48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr---------------------------clftL~GHl-------   93 (1202)
T KOG0292|consen   48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR---------------------------CLFTLLGHL-------   93 (1202)
T ss_pred             hccCCccceeeecCCCCeEEecCCccEEEEEecccce---------------------------ehhhhcccc-------
Confidence            3499999999999999999999999999999998765                           567899999       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           +-|..+.|  ++.-..++++|.|.+|+||+..++++..+.                                   
T Consensus        94 -----DYVRt~~F--HheyPWIlSASDDQTIrIWNwqsr~~iavl-----------------------------------  131 (1202)
T KOG0292|consen   94 -----DYVRTVFF--HHEYPWILSASDDQTIRIWNWQSRKCIAVL-----------------------------------  131 (1202)
T ss_pred             -----ceeEEeec--cCCCceEEEccCCCeEEEEeccCCceEEEE-----------------------------------
Confidence                 66999999  577789999999999999999988766543                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce----e----------
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC----F----------  253 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~----~----------  253 (457)
                                                .+|...|.|..|+|....++++ -|.+|++||+..-.+.    -          
T Consensus       132 --------------------------tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~  185 (1202)
T KOG0292|consen  132 --------------------------TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ  185 (1202)
T ss_pred             --------------------------ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc
Confidence                                      6899999999999999999999 9999999998621100    0          


Q ss_pred             ---eeee----cCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecc
Q 012721          254 ---NIVD----MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (457)
Q Consensus       254 ---~~~~----~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  326 (457)
                         ..+.    +-...+++|...|.-++|+|.- .+|++|+.|..|++|.+...       +.|+.        .+..+|
T Consensus       186 ~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnet-------KaWEv--------DtcrgH  249 (1202)
T KOG0292|consen  186 GNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNET-------KAWEV--------DTCRGH  249 (1202)
T ss_pred             cchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccc-------cceee--------hhhhcc
Confidence               0000    0012368999999999999998 99999999999999998765       33433        346789


Q ss_pred             ccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721          327 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  405 (457)
Q Consensus       327 ~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  405 (457)
                      ...|+++-|+|...+|++.++ ++|++||+.. .+.+.+++.....-               +.++-+|..+++++|- |
T Consensus       250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~k-Rt~v~tfrrendRF---------------W~laahP~lNLfAAgH-D  312 (1202)
T KOG0292|consen  250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK-RTSVQTFRRENDRF---------------WILAAHPELNLFAAGH-D  312 (1202)
T ss_pred             cCCcceEEecCccceeEecCCCccEEEEeccc-ccceeeeeccCCeE---------------EEEEecCCcceeeeec-C
Confidence            999999999999999998764 9999999975 77788886544432               4677788777666544 3


Q ss_pred             CcEEEEecC
Q 012721          406 NLLRIFSHG  414 (457)
Q Consensus       406 g~i~iw~~~  414 (457)
                      +-+.+|.+.
T Consensus       313 sGm~VFkle  321 (1202)
T KOG0292|consen  313 SGMIVFKLE  321 (1202)
T ss_pred             CceEEEEEc
Confidence            334455554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2.1e-28  Score=206.04  Aligned_cols=301  Identities=20%  Similarity=0.239  Sum_probs=221.8

Q ss_pred             cchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCc
Q 012721           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (457)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (457)
                      ...|+..+.  + .+.+...|.+.|+|+.||.+|.|||||+.+|.|+||+..++...                       
T Consensus        88 AflW~~~~g--e-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~-----------------------  141 (399)
T KOG0296|consen   88 AFLWDISTG--E-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ-----------------------  141 (399)
T ss_pred             EEEEEccCC--c-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE-----------------------
Confidence            344665542  2 45566779999999999999999999999999999999988742                       


Q ss_pred             cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccc
Q 012721           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (457)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (457)
                          ..+...-            +.|.-+.|  +|.+..|+.|+.||.+.+|.+.++...+++..+ ..+++        
T Consensus       142 ----~~~~~e~------------~dieWl~W--Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct--------  194 (399)
T KOG0296|consen  142 ----WKLDQEV------------EDIEWLKW--HPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCT--------  194 (399)
T ss_pred             ----EEeeccc------------CceEEEEe--cccccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcc--------
Confidence                2222222            45778889  568889999999999999999986554444332 12222        


Q ss_pred             ccccccCCCCCceeccCCcc----ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEE
Q 012721          171 KNFMNEHNPPSFAHGYHLEW----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (457)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd  245 (457)
                                ...++++|+.    ..++.+++|+..+   .+++............++.++.++..++.| .++.+++-+
T Consensus       195 ----------~G~f~pdGKr~~tgy~dgti~~Wn~kt---g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~  261 (399)
T KOG0296|consen  195 ----------CGEFIPDGKRILTGYDDGTIIVWNPKT---GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN  261 (399)
T ss_pred             ----------cccccCCCceEEEEecCceEEEEecCC---CceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence                      2334455542    3467999999864   344444433445567899999999999999 999999888


Q ss_pred             cCCCcceeeeee-cCCCcccCCCCceEEEEEec---CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCccc
Q 012721          246 LEISDQCFNIVD-MKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (457)
Q Consensus       246 ~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p---~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~  321 (457)
                      .. .++.+.... ..+.-...+...+.|+.+.|   .- .+.|+|+.||+|.|||+...++.    .             
T Consensus       262 ~~-sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~~~~R----~-------------  322 (399)
T KOG0296|consen  262 NG-SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAASTLR----H-------------  322 (399)
T ss_pred             cc-cceEEEecCCCCccccccchhhhhhhhhccccccc-chhhcccccceEEEEecccchhh----e-------------
Confidence            76 455554432 12222234455555555544   44 58899999999999999885432    1             


Q ss_pred             ceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEE
Q 012721          322 FFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (457)
Q Consensus       322 ~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  400 (457)
                       .-.|..+|..+.|-+ ..+|++++ +|.|+.||.++ ++++..+.+|...+               .+++++|+.++++
T Consensus       323 -~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~I---------------l~f~ls~~~~~vv  384 (399)
T KOG0296|consen  323 -ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDART-GQLKFTYTGHQMGI---------------LDFALSPQKRLVV  384 (399)
T ss_pred             -eccCCCceEEEEEcC-cchheeeccCceEEeeeccc-cceEEEEecCchhe---------------eEEEEcCCCcEEE
Confidence             133567899999999 66777765 59999999997 99999999999876               7999999999999


Q ss_pred             EEeCCCcEEEEecC
Q 012721          401 TGSYSNLLRIFSHG  414 (457)
Q Consensus       401 s~~~dg~i~iw~~~  414 (457)
                      |+|.|++.+||++.
T Consensus       385 T~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  385 TVSDDNTALVFEVP  398 (399)
T ss_pred             EecCCCeEEEEecC
Confidence            99999999999875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.1e-28  Score=225.68  Aligned_cols=286  Identities=14%  Similarity=0.164  Sum_probs=236.3

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ...+|...|.++++|.+...+++|+. +.|+||+.++.+                           +++++...      
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~k---------------------------ciRTi~~~------  413 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLK---------------------------CIRTITCG------  413 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcc---------------------------eeEEeccc------
Confidence            34569999999999999988888765 579999998776                           33444433      


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                              -+.+..|.  |.+.++++|...|.+.++|+........+                                 
T Consensus       414 --------y~l~~~Fv--pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti---------------------------------  450 (888)
T KOG0306|consen  414 --------YILASKFV--PGDRYIVLGTKNGELQVFDLASASLVETI---------------------------------  450 (888)
T ss_pred             --------cEEEEEec--CCCceEEEeccCCceEEEEeehhhhhhhh---------------------------------
Confidence                    38888995  67889999999999999999876544321                                 


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC----cceeeeeecCCC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPS  261 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~  261 (457)
                                                  .+|.+.|++++.+||++.+++| .|.+|++||....    +...+.+.++..
T Consensus       451 ----------------------------~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~  502 (888)
T KOG0306|consen  451 ----------------------------RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT  502 (888)
T ss_pred             ----------------------------hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc
Confidence                                        6899999999999999999999 9999999998621    111122222222


Q ss_pred             cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~  341 (457)
                      ..-...+.|.|++++||| ++|+++-.|.++++|-+.+-+..       -          .+-||.-+|.+|..|||+++
T Consensus       503 rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFf-------l----------sLYGHkLPV~smDIS~DSkl  564 (888)
T KOG0306|consen  503 RTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFF-------L----------SLYGHKLPVLSMDISPDSKL  564 (888)
T ss_pred             eEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeee-------e----------eecccccceeEEeccCCcCe
Confidence            233456889999999999 99999999999999999885422       1          14678899999999999999


Q ss_pred             EEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee
Q 012721          342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  420 (457)
Q Consensus       342 l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~  420 (457)
                      +++|+ |..|++|-++. +.+-+.+-+|...+               +++.|-|+...+.+++.|+.|+-||-..- ..+
T Consensus       565 ivTgSADKnVKiWGLdF-GDCHKS~fAHdDSv---------------m~V~F~P~~~~FFt~gKD~kvKqWDg~kF-e~i  627 (888)
T KOG0306|consen  565 IVTGSADKNVKIWGLDF-GDCHKSFFAHDDSV---------------MSVQFLPKTHLFFTCGKDGKVKQWDGEKF-EEI  627 (888)
T ss_pred             EEeccCCCceEEecccc-chhhhhhhcccCce---------------eEEEEcccceeEEEecCcceEEeechhhh-hhh
Confidence            99997 59999999986 89999999999875               69999999999999999999999998877 778


Q ss_pred             eEEecCCCcceeeeeccCCcceeccccccccccc
Q 012721          421 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY  454 (457)
Q Consensus       421 ~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~  454 (457)
                      +++.+|...|++++.+|+|.-..+  ++.+++.|
T Consensus       628 q~L~~H~~ev~cLav~~~G~~vvs--~shD~sIR  659 (888)
T KOG0306|consen  628 QKLDGHHSEVWCLAVSPNGSFVVS--SSHDKSIR  659 (888)
T ss_pred             eeeccchheeeeeEEcCCCCeEEe--ccCCceeE
Confidence            999999999999999999998888  77777766

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=6.6e-30  Score=218.26  Aligned_cols=271  Identities=20%  Similarity=0.254  Sum_probs=216.2

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      |.+.|..+.|-++...|++|+.|..|++|++...+.                         ..+.+|.|..         
T Consensus       174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------------~~~~tLaGs~---------  219 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------------ELISTLAGSL---------  219 (459)
T ss_pred             cccccceeEEccCcchhhhcchhhhhhhhhcccchh-------------------------hhhhhhhccC---------
Confidence            889999999999989999999999999999876653                         2556677777         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ++|+.+.|  .+++.++++++.|+.+++|++...+....                                      
T Consensus       220 ---g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~T--------------------------------------  256 (459)
T KOG0288|consen  220 ---GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHT--------------------------------------  256 (459)
T ss_pred             ---CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhh--------------------------------------
Confidence               88999999  78899999999999999999988765433                                      


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                             +.+|.+.|+++.|......+++| .|.+|++||+. ...+.+.+      +.  ...
T Consensus       257 -----------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~-k~~C~kt~------l~--~S~  304 (459)
T KOG0288|consen  257 -----------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ-KAYCSKTV------LP--GSQ  304 (459)
T ss_pred             -----------------------hcccccceeeehhhccccceeeccccchhhhhhhh-hhheeccc------cc--ccc
Confidence                                   26899999999998766668899 99999999999 56666543      21  244


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~  348 (457)
                      +..|+..  . ..+++|-.|++|++||.++....    ...+.              .+.|+++..+++|..|.+++ |.
T Consensus       305 cnDI~~~--~-~~~~SgH~DkkvRfwD~Rs~~~~----~sv~~--------------gg~vtSl~ls~~g~~lLsssRDd  363 (459)
T KOG0288|consen  305 CNDIVCS--I-SDVISGHFDKKVRFWDIRSADKT----RSVPL--------------GGRVTSLDLSMDGLELLSSSRDD  363 (459)
T ss_pred             ccceEec--c-eeeeecccccceEEEeccCCcee----eEeec--------------CcceeeEeeccCCeEEeeecCCC
Confidence            5566655  3 67899999999999999987543    33333              35899999999999888776 59


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  428 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  428 (457)
                      ++.+.|+++ ......+......           +-.+.+.+.|||++.|+++|+.||.|+||++.++ +....+....+
T Consensus       364 tl~viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s  430 (459)
T KOG0288|consen  364 TLKVIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTS  430 (459)
T ss_pred             ceeeeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCC
Confidence            999999986 5555566543322           1112378999999999999999999999999999 66666665555


Q ss_pred             c--ceeeeeccCCcceec
Q 012721          429 E--NRKPILQAAPRARRS  444 (457)
Q Consensus       429 ~--v~~~~~~p~~~~~~~  444 (457)
                      +  |++++|+|.|...++
T Consensus       431 ~~aI~s~~W~~sG~~Lls  448 (459)
T KOG0288|consen  431 NAAITSLSWNPSGSGLLS  448 (459)
T ss_pred             CcceEEEEEcCCCchhhc
Confidence            5  999999999876655

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=7.9e-29  Score=203.38  Aligned_cols=250  Identities=14%  Similarity=0.191  Sum_probs=202.8

Q ss_pred             CCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        26 ~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      -....|.++|..+.|.+|++.|++++.|.+|+.||.++++.                           +..+++|.    
T Consensus        84 ~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~---------------------------~rk~k~h~----  132 (338)
T KOG0265|consen   84 WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR---------------------------IRKHKGHT----  132 (338)
T ss_pred             eeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee---------------------------eehhcccc----
Confidence            33446999999999999999999999999999999998874                           46788888    


Q ss_pred             ccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          106 YLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                              .-|+.+.-  ..- -.++.+++.|+++++||++........                               
T Consensus       133 --------~~vNs~~p--~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-------------------------------  171 (338)
T KOG0265|consen  133 --------SFVNSLDP--SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-------------------------------  171 (338)
T ss_pred             --------ceeeecCc--cccCCeEEEecCCCceEEEEeecccchhhcc-------------------------------
Confidence                    66777763  333 446667899999999999876544331                               


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                                                     ...-.++++.|..++..+.+| -|+.|++||++ ......+       +
T Consensus       172 -------------------------------~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r-~~d~~~~-------l  212 (338)
T KOG0265|consen  172 -------------------------------ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR-KNDGLYT-------L  212 (338)
T ss_pred             -------------------------------ccceeEEEEEecccccceeeccccCceeeeccc-cCcceEE-------e
Confidence                                           233468899999999999999 99999999998 5555544       7


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      .+|.+.|+.+..+|+| .++.+-+.|.++++||++--......+.++.+|...         .......++|+|++.++.
T Consensus       213 sGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn---------feknlL~cswsp~~~~i~  282 (338)
T KOG0265|consen  213 SGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN---------FEKNLLKCSWSPNGTKIT  282 (338)
T ss_pred             ecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhh---------hhhhcceeeccCCCCccc
Confidence            8999999999999999 999999999999999998754333334555552111         123456789999999999


Q ss_pred             EEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          344 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       344 s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      +|+ |..+++||... ...+..+.+|.+.+               .+++|+|...+|.+++.|.+|++=+
T Consensus       283 ags~dr~vyvwd~~~-r~~lyklpGh~gsv---------------n~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  283 AGSADRFVYVWDTTS-RRILYKLPGHYGSV---------------NEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             cccccceEEEeeccc-ccEEEEcCCcceeE---------------EEeeecCCCcEEEEeccCceeEeec
Confidence            986 59999999974 78899999999876               5899999999999999999998744

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.4e-29  Score=212.81  Aligned_cols=284  Identities=16%  Similarity=0.177  Sum_probs=206.5

Q ss_pred             CCccccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           26 DEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        26 ~~~~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      +..-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...+                           +..+|++|.   
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~---------------------------~~~~f~AH~---  109 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE---------------------------CIRTFKAHE---  109 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh---------------------------hhheeeccc---
Confidence            3446799999999999977 789999999999999998765                           457899999   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                               +.|..|++  ..  ..+++++.|++|+.|.++.. ....+.  ....+..+...                 
T Consensus       110 ---------G~V~Gi~v--~~--~~~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~-----------------  156 (433)
T KOG0268|consen  110 ---------GLVRGICV--TQ--TSFFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHH-----------------  156 (433)
T ss_pred             ---------CceeeEEe--cc--cceEEecCCcceeeeeccCC-cceeee--ccccccccccc-----------------
Confidence                     89999999  33  57999999999999998763 222211  11111111110                 


Q ss_pred             ccCCcccccc-ceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721          185 GYHLEWTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       185 ~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                      -....|+.++ .|.+||.+..   .+++.+ .--...|.++.|+|.. ..|++| .|+.|.+||++ ....++.+.+   
T Consensus       157 ~~~~~FaTcGe~i~IWD~~R~---~Pv~sm-swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R-~~~Pl~KVi~---  228 (433)
T KOG0268|consen  157 RKNSVFATCGEQIDIWDEQRD---NPVSSM-SWGADSISSVKFNPVETSILASCASDRSIVLYDLR-QASPLKKVIL---  228 (433)
T ss_pred             cccccccccCceeeecccccC---Ccccee-ecCCCceeEEecCCCcchheeeeccCCceEEEecc-cCCccceeee---
Confidence            0111233344 8999999754   334433 3445678999999954 556667 99999999999 4544433211   


Q ss_pred             cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~  341 (457)
                           ...-..|+|+|.+ ..+++|++|..+..||++.-..      ..          ....+|.+.|.++.|||.|+-
T Consensus       229 -----~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~------p~----------~v~~dhvsAV~dVdfsptG~E  286 (433)
T KOG0268|consen  229 -----TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR------PL----------NVHKDHVSAVMDVDFSPTGQE  286 (433)
T ss_pred             -----eccccceecCccc-cceeeccccccceehhhhhhcc------cc----------hhhcccceeEEEeccCCCcch
Confidence                 1334678999977 8899999999999999997531      11          124568899999999999999


Q ss_pred             EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721          342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                      +++|+. .+|+||..+. +..-..+              .+..+.-|+++.||-|.+||++||+|+.|++|.....+
T Consensus       287 fvsgsyDksIRIf~~~~-~~SRdiY--------------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  287 FVSGSYDKSIRIFPVNH-GHSRDIY--------------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             hccccccceEEEeecCC-Ccchhhh--------------hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            999985 9999999874 3322222              22222234799999999999999999999999987653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.1e-27  Score=215.31  Aligned_cols=240  Identities=26%  Similarity=0.404  Sum_probs=197.8

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|...+.++.|+|++++|++++.+|.|++|++.+++.                           +..+..|.       
T Consensus        48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~---------------------------~~~~~~~~-------   93 (289)
T cd00200          48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC---------------------------VRTLTGHT-------   93 (289)
T ss_pred             ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc---------------------------eEEEeccC-------
Confidence            34788899999999999999999999999999987542                           34566776       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.++.|  ++++.++++++.|+.|.+|++.+++.....                                   
T Consensus        94 -----~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------------------  131 (289)
T cd00200          94 -----SYVSSVAF--SPDGRILSSSSRDKTIKVWDVETGKCLTTL-----------------------------------  131 (289)
T ss_pred             -----CcEEEEEE--cCCCCEEEEecCCCeEEEEECCCcEEEEEe-----------------------------------
Confidence                 78999999  566778888888999999999865443221                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                ..|...+.+++|+|++.+++++ .|+.|++||++ ..+....       +..|.
T Consensus       132 --------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~-------~~~~~  177 (289)
T cd00200         132 --------------------------RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVAT-------LTGHT  177 (289)
T ss_pred             --------------------------ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc-cccccee-------EecCc
Confidence                                      4577789999999999999998 69999999998 4444443       45677


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-  346 (457)
                      ..+.+++|+|++ +.+++++.|+.|++||++.++..    ..+             ..|...+.++.|+|++.++++++ 
T Consensus       178 ~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~~-------------~~~~~~i~~~~~~~~~~~~~~~~~  239 (289)
T cd00200         178 GEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCL----GTL-------------RGHENGVNSVAFSPDGYLLASGSE  239 (289)
T ss_pred             cccceEEECCCc-CEEEEecCCCcEEEEECCCCcee----cch-------------hhcCCceEEEEEcCCCcEEEEEcC
Confidence            899999999998 88999999999999999876433    222             23456899999999999999888 


Q ss_pred             cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      ++.|++||+.. ++....+..|...+               .+++|+|++.+|++++.|+.|++|+
T Consensus       240 ~~~i~i~~~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         240 DGTIRVWDLRT-GECVQTLSGHTNSV---------------TSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCcEEEEEcCC-ceeEEEccccCCcE---------------EEEEECCCCCEEEEecCCCeEEecC
Confidence            69999999975 67777777776544               6899999999999999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.1e-27  Score=243.12  Aligned_cols=258  Identities=13%  Similarity=0.169  Sum_probs=192.7

Q ss_pred             ccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        30 ~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .+...|.+++|++ ++.+||+++.||+|+|||+.+++                           .+..+.+|.       
T Consensus       530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~---------------------------~~~~~~~H~-------  575 (793)
T PLN00181        530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ---------------------------LVTEMKEHE-------  575 (793)
T ss_pred             cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe---------------------------EEEEecCCC-------
Confidence            4567899999987 47899999999999999998665                           456778898       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           +.|++++|.| .++.+|++|+.|++|++||+.++.....+                                   
T Consensus       576 -----~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-----------------------------------  614 (793)
T PLN00181        576 -----KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTI-----------------------------------  614 (793)
T ss_pred             -----CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEE-----------------------------------
Confidence                 8899999952 47789999999999999999877543321                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeC-CCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                . +...+.++.|+ +++.+|++| .|+.|++||++........       +.+|
T Consensus       615 --------------------------~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-------~~~h  660 (793)
T PLN00181        615 --------------------------K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-------MIGH  660 (793)
T ss_pred             --------------------------e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-------ecCC
Confidence                                      1 22468899994 579999999 9999999999843333332       5689


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ...|.++.|. ++ .+|++++.|++|++||++......           .......+.+|...+..++|+|++.+|++|+
T Consensus       661 ~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~-----------~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs  727 (793)
T PLN00181        661 SKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGI-----------NETPLHSFMGHTNVKNFVGLSVSDGYIATGS  727 (793)
T ss_pred             CCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcccc-----------CCcceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            9999999997 55 789999999999999997642100           0011223567888899999999999999997


Q ss_pred             c-CcEEEEeccCCCCceeEeeec-cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                      . +.|++|+... ..++..+... ...+...   ...+.-..|.+++|+|++..|++|+.||.|+||++
T Consensus       728 ~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~---~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        728 ETNEVFVYHKAF-PMPVLSYKFKTIDPVSGL---EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCEEEEEECCC-CCceEEEecccCCccccc---ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            5 9999999864 3333332211 1110000   00011112479999999999999999999999996

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.5e-26  Score=182.66  Aligned_cols=298  Identities=18%  Similarity=0.200  Sum_probs=217.8

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      +..+..|.+++|+|.|.+.|+|++..+.+|.........           +.+... ...|.......-+.|        
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~-----------r~~hea-~~~pp~v~~kr~khh--------   88 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL-----------RHAHEA-AKQPPSVLCKRNKHH--------   88 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCc-----------cccccc-ccCCCeEEeeecccc--------
Confidence            345789999999999999999999999998765433211           000000 000111111222334        


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                          .+.|.|.+|  +++|+++++|+.|++|++..++.......-                                   
T Consensus        89 ----kgsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g-----------------------------------  127 (350)
T KOG0641|consen   89 ----KGSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATG-----------------------------------  127 (350)
T ss_pred             ----CccEEEEEe--cCccCeEEecCCCceEEEEecccccccccC-----------------------------------
Confidence                499999999  899999999999999999877654332210                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC----CCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCc
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                                          .-..+ .-|.+.|..++|-.    .+.+|+++  .|..|++-|.. .++.++.       
T Consensus       128 --------------------~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g~~~~a-------  178 (350)
T KOG0641|consen  128 --------------------HDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RGQGFHA-------  178 (350)
T ss_pred             --------------------cceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CCCccee-------
Confidence                                00001 56889999999943    35677775  78888888887 5666644       


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l  342 (457)
                      +.+|.+.|.++ ++=++ .++++|+.|.+|++||++-....    .++........      -..+.|.+++..|.|++|
T Consensus       179 ~sghtghilal-yswn~-~m~~sgsqdktirfwdlrv~~~v----~~l~~~~~~~g------lessavaav~vdpsgrll  246 (350)
T KOG0641|consen  179 LSGHTGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSCV----NTLDNDFHDGG------LESSAVAAVAVDPSGRLL  246 (350)
T ss_pred             ecCCcccEEEE-EEecC-cEEEccCCCceEEEEeeecccee----eeccCcccCCC------cccceeEEEEECCCccee
Confidence            68999998877 34455 89999999999999999986544    22222000000      013679999999999999


Q ss_pred             EEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC---Cc
Q 012721          343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---SA  418 (457)
Q Consensus       343 ~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~---~~  418 (457)
                      ++|- |....+||++ .+++++.+..|...+               .++.|+|...|+++++.|..|++-|++-.   +.
T Consensus       247 ~sg~~dssc~lydir-g~r~iq~f~phsadi---------------r~vrfsp~a~yllt~syd~~ikltdlqgdla~el  310 (350)
T KOG0641|consen  247 ASGHADSSCMLYDIR-GGRMIQRFHPHSADI---------------RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHEL  310 (350)
T ss_pred             eeccCCCceEEEEee-CCceeeeeCCCccce---------------eEEEeCCCceEEEEecccceEEEeecccchhhcC
Confidence            9996 4889999998 489999999988765               79999999999999999999999999753   24


Q ss_pred             eeeEEecCCCcceeeeeccCCcceec
Q 012721          419 GGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       419 ~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ...+...|+..+....|||+--+..+
T Consensus       311 ~~~vv~ehkdk~i~~rwh~~d~sfis  336 (350)
T KOG0641|consen  311 PIMVVAEHKDKAIQCRWHPQDFSFIS  336 (350)
T ss_pred             ceEEEEeccCceEEEEecCccceeee
Confidence            56677889999999999998766655

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=1.9e-29  Score=219.77  Aligned_cols=246  Identities=20%  Similarity=0.310  Sum_probs=197.1

Q ss_pred             CCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        26 ~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      .....|..+|.+++|+++|..+.+++.|+.|++||+++|+..                           ..|.  .    
T Consensus       252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~---------------------------~~f~--~----  298 (503)
T KOG0282|consen  252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL---------------------------SRFH--L----  298 (503)
T ss_pred             hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE---------------------------EEEe--c----
Confidence            345569999999999999999999999999999999999852                           2222  2    


Q ss_pred             ccccccccCcEEEEEEEecCCC-CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          106 YLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                             ...++|+.|.  |++ +.|++|+.|+.|+.||+++++++..+                               
T Consensus       299 -------~~~~~cvkf~--pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-------------------------------  338 (503)
T KOG0282|consen  299 -------DKVPTCVKFH--PDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-------------------------------  338 (503)
T ss_pred             -------CCCceeeecC--CCCCcEEEEecCCCcEEEEeccchHHHHHH-------------------------------
Confidence                   2468999995  555 78999999999999999998754321                               


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                                                    ..|-+.|..+.|-+++..++++ +|++++||+.+. ...++.+      .
T Consensus       339 ------------------------------d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i------~  381 (503)
T KOG0282|consen  339 ------------------------------DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNI------A  381 (503)
T ss_pred             ------------------------------HhhhhheeeeEEccCCceEeeeccCccEEEEEcCC-Cccchhh------c
Confidence                                          4688899999999999999999 999999999983 3333321      2


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc--cceEEEEEccCCCe
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII--ASISDIKFANDGQH  341 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~~g~~  341 (457)
                      ..+.....++..+|++ .+++.-+.|+.|.+|.+...-              ....+..|.+|.  +.-..+.|||||++
T Consensus       382 ~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~--------------r~nkkK~feGh~vaGys~~v~fSpDG~~  446 (503)
T KOG0282|consen  382 DPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPF--------------RLNKKKRFEGHSVAGYSCQVDFSPDGRT  446 (503)
T ss_pred             chhhccCcceecCCCC-CeehhhccCceEEEEeccccc--------------ccCHhhhhcceeccCceeeEEEcCCCCe
Confidence            2233456789999999 999999999999999865421              111223345554  45678899999999


Q ss_pred             EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEe
Q 012721          342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFS  412 (457)
Q Consensus       342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~  412 (457)
                      |++|+. |.+.+||.++ .+++..++.|+..+               +.+.|+|. ...+|+++.||.|++|+
T Consensus       447 l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~c---------------i~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  447 LCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPC---------------IGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEeecCCccEEEeechh-hhhhhccccCCcce---------------EEEEecCCCcceeEecccCceeEecC
Confidence            999975 9999999987 88999999997765               68999996 46899999999999996

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=9.8e-28  Score=207.89  Aligned_cols=310  Identities=15%  Similarity=0.223  Sum_probs=231.6

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.-+|.||+++|++++.++++.+|+|.=|++.+++..      ..-+++. .             .++.|-.++..-+ 
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~------~~i~~~~-e-------------v~k~~~~~~k~~r-  198 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKD------RYIIERD-E-------------VLKSHGNPLKESR-  198 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCccc------ccccccc-h-------------hhhhccCCCCccc-
Confidence            48999999999999999999999999999999988752      0001100 0             0111111111111 


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                      -.|...|.+++.  ++||.+|++|+.|..|.||+.++.+....                                     
T Consensus       199 ~~h~keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~-------------------------------------  239 (479)
T KOG0299|consen  199 KGHVKEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKV-------------------------------------  239 (479)
T ss_pred             ccccceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhc-------------------------------------
Confidence            122377999999  89999999999999999999998754432                                     


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                             + .+|.+.|.+++|-.....++++ .|.+|++|+++ ....+.+       +-+|+.
T Consensus       240 -----------------------~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~vet-------lyGHqd  287 (479)
T KOG0299|consen  240 -----------------------F-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVET-------LYGHQD  287 (479)
T ss_pred             -----------------------c-cccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHHH-------HhCCcc
Confidence                                   2 7899999999998777777777 99999999998 4444433       789999


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-  347 (457)
                      .|..|....-+ +.+.+|+.|+++++|++.....     .+             +.+|.+.+.|++|-.+ ..+++|+| 
T Consensus       288 ~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----li-------------frg~~~sidcv~~In~-~HfvsGSdn  347 (479)
T KOG0299|consen  288 GVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----LI-------------FRGGEGSIDCVAFIND-EHFVSGSDN  347 (479)
T ss_pred             ceeeechhccc-ceEEeccccceeEEEeccccce-----ee-------------eeCCCCCeeeEEEecc-cceeeccCC
Confidence            99999988887 7888888999999999955321     12             3445678999999765 46778876 


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe--c
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE--A  425 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--~  425 (457)
                      |.|.+|++.. .+++.+.....+..+....++.+   +.|++++..|...++|+|+.+|.|++|.+..+...+..+.  .
T Consensus       348 G~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls  423 (479)
T KOG0299|consen  348 GSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS  423 (479)
T ss_pred             ceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc
Confidence            9999999976 88888877554444332222222   5678999999999999999999999999998843333222  2


Q ss_pred             CCCcceeeeeccCCcceecccccccccccc
Q 012721          426 GKNENRKPILQAAPRARRSSLSNLTRGLYR  455 (457)
Q Consensus       426 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~  455 (457)
                      -.+-|++++|++++.....|++=-.|-=||
T Consensus       424 ~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  424 LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             cccEEEEEEEccCCCEEEEeccccccccee
Confidence            567899999999999888877766554443

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=8.4e-27  Score=220.15  Aligned_cols=240  Identities=17%  Similarity=0.239  Sum_probs=170.2

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (457)
                      .+..+.+|.            +.|.+++|  +|+ +.+|++|+.|++|++||+.++..... .                 
T Consensus        66 ~v~~L~gH~------------~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~-----------------  113 (568)
T PTZ00420         66 PVIKLKGHT------------SSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVK-E-----------------  113 (568)
T ss_pred             eEEEEcCCC------------CCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCcccc-c-----------------
Confidence            456788998            88999999  554 67999999999999999976421100 0                 


Q ss_pred             cccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCC
Q 012721          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEIS  249 (457)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~  249 (457)
                                                        ...++..+ .+|...|.+++|+|++..+ +++ .|+.|++||++ .
T Consensus       114 ----------------------------------i~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~-t  157 (568)
T PTZ00420        114 ----------------------------------IKDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-N  157 (568)
T ss_pred             ----------------------------------cccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC-C
Confidence                                              00111112 6899999999999988765 677 99999999998 4


Q ss_pred             cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      ++....       +. |...|.+++|+|+| .+|++++.|+.|+|||+++++..    ..+             .+|.+.
T Consensus       158 g~~~~~-------i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i----~tl-------------~gH~g~  211 (568)
T PTZ00420        158 EKRAFQ-------IN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIA----SSF-------------HIHDGG  211 (568)
T ss_pred             CcEEEE-------Ee-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEE----EEE-------------ecccCC
Confidence            443322       22 45679999999999 99999999999999999987543    222             234443


Q ss_pred             e-----EEEEEccCCCeEEEEe-c----CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE-cCCCcE
Q 012721          330 I-----SDIKFANDGQHLLSRD-Y----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLH  398 (457)
Q Consensus       330 v-----~~~~~s~~g~~l~s~~-~----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~  398 (457)
                      +     +...|++++.+|++++ +    +.|+|||++...+++..+..+.... .             ....| .+++.+
T Consensus       212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~-~-------------L~p~~D~~tg~l  277 (568)
T PTZ00420        212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA-P-------------LIPHYDESTGLI  277 (568)
T ss_pred             ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc-c-------------eEEeeeCCCCCE
Confidence            3     3345668888888754 3    3799999985567776654443321 0             12233 445889


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCc
Q 012721          399 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  440 (457)
Q Consensus       399 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  440 (457)
                      +++|+.|+.|++|++..+.........+..|...++|.|..-
T Consensus       278 ~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        278 YLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence            999999999999999877322222223567889999998743

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.7e-27  Score=191.29  Aligned_cols=240  Identities=15%  Similarity=0.202  Sum_probs=193.3

Q ss_pred             eeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccc
Q 012721           96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (457)
Q Consensus        96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (457)
                      .++||+            .+++.|.|  +.+|.+|.+++.|.+..+|-..+|+.+-.                       
T Consensus         5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlGt-----------------------   47 (327)
T KOG0643|consen    5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLGT-----------------------   47 (327)
T ss_pred             ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceeee-----------------------
Confidence            467888            89999999  79999999999999999999877765433                       


Q ss_pred             cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceee
Q 012721          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN  254 (457)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  254 (457)
                                                           + .+|.+.|+|++.+.+.+.+++| .|.++++||++ .++.+.
T Consensus        48 -------------------------------------y-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-tGk~la   88 (327)
T KOG0643|consen   48 -------------------------------------Y-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-TGKQLA   88 (327)
T ss_pred             -------------------------------------e-cCCCceEEEEEecCCcceeeeccccceeEEEEcC-CCcEEE
Confidence                                                 2 6999999999999999999999 99999999999 677776


Q ss_pred             eeecCCCcccCCCCceEEEEEecCCccEEEEEcc-----CCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       255 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      .++        -..+|..+.|+++| ++++....     .+.|.++|++......          ....+...+..+.+.
T Consensus        89 ~~k--------~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~----------~s~ep~~kI~t~~sk  149 (327)
T KOG0643|consen   89 TWK--------TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDI----------DSEEPYLKIPTPDSK  149 (327)
T ss_pred             Eee--------cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhh----------cccCceEEecCCccc
Confidence            653        33789999999999 77776653     4679999998643110          011111123344578


Q ss_pred             eEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721          330 ISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  408 (457)
Q Consensus       330 v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i  408 (457)
                      ++.+.|+|.+++|++|.+ |.|..||++++.+.+.....|...+               .++.+++|..++++++.|.+-
T Consensus       150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~Dtta  214 (327)
T KOG0643|consen  150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKDTTA  214 (327)
T ss_pred             eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccCccc
Confidence            999999999999999975 9999999997556677777788765               689999999999999999999


Q ss_pred             EEEecCCCC------------------------------------------------------ceeeEEecCCCcceeee
Q 012721          409 RIFSHGVGS------------------------------------------------------AGGITVEAGKNENRKPI  434 (457)
Q Consensus       409 ~iw~~~~~~------------------------------------------------------~~~~~~~~~~~~v~~~~  434 (457)
                      ++||+.+-+                                                      +.....++|.+|+++|+
T Consensus       215 kl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvA  294 (327)
T KOG0643|consen  215 KLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVA  294 (327)
T ss_pred             eeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeE
Confidence            999987641                                                      11223678999999999


Q ss_pred             eccCCcceecc
Q 012721          435 LQAAPRARRSS  445 (457)
Q Consensus       435 ~~p~~~~~~~~  445 (457)
                      |||+|....+|
T Consensus       295 fhPdGksYsSG  305 (327)
T KOG0643|consen  295 FHPDGKSYSSG  305 (327)
T ss_pred             ECCCCcccccC
Confidence            99999998883

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.2e-27  Score=226.32  Aligned_cols=305  Identities=12%  Similarity=0.174  Sum_probs=220.4

Q ss_pred             cCCceEEEEECCCCCEEEEEe--CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      +...|.++..+|||..+|||+  .||.++||+.+.--..      ...   ...      .-.+.+.+...|.       
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~------~~~---~~~------~l~k~l~~m~~h~-------   69 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE------KEE---KNE------NLPKHLCTMDDHD-------   69 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccch------hhh---hhc------ccchhheeecccc-------
Confidence            356799999999999999999  8999999997643210      000   000      0122445566676       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           +.|+|+.|  ++||.+||+|+.|+.|.+|+............                                 
T Consensus        70 -----~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs---------------------------------  109 (942)
T KOG0973|consen   70 -----GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVFGS---------------------------------  109 (942)
T ss_pred             -----CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCcccccc---------------------------------
Confidence                 89999999  89999999999999999999774110000000                                 


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                         .++      .......++...+ .+|...|..++|+|++.+|+++ .|++|.||+.. ..+.+++       +.+|.
T Consensus       110 ---~g~------~~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~-tF~~~~v-------l~~H~  171 (942)
T KOG0973|consen  110 ---TGG------AKNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK-TFELLKV-------LRGHQ  171 (942)
T ss_pred             ---ccc------ccccceeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEccc-cceeeee-------eeccc
Confidence               000      0001122444445 7899999999999999999999 99999999998 4566655       78999


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-  346 (457)
                      ..|-.+.|.|-| ++||+-+.|++|++|++..-.........|+.           ..-...+..+.|||||+||++.. 
T Consensus       172 s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~-----------~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  172 SLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEE-----------SPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             ccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhh-----------CCCcceeeecccCCCcCeecchhh
Confidence            999999999999 99999999999999996653322111111211           11134688999999999999853 


Q ss_pred             ---c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-----C------------cEEEEEeCC
Q 012721          347 ---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----G------------LHFATGSYS  405 (457)
Q Consensus       347 ---~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-----~------------~~l~s~~~d  405 (457)
                         . .++.|.+-.+ -+.-..+-+|..++               ..+.|+|.     .            ..+|+|+.|
T Consensus       240 ~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD  303 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGT-WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD  303 (942)
T ss_pred             ccCCcceeEEEecCC-ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence               1 5777777653 45556778888865               56778761     1            167899999


Q ss_pred             CcEEEEecCCCCceeeEEecCCCcceeeeeccCCccee
Q 012721          406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  443 (457)
Q Consensus       406 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  443 (457)
                      ++|.||.....+......+-....|..++|+|||....
T Consensus       304 rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lf  341 (942)
T KOG0973|consen  304 RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLF  341 (942)
T ss_pred             ccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEE
Confidence            99999999877555555566688999999999986554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.4e-26  Score=199.32  Aligned_cols=281  Identities=17%  Similarity=0.238  Sum_probs=223.1

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      ....+.++...|..+.++||+.|..+.++|....+                           .+.+|+||.         
T Consensus       218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---------------------------~l~~~~Gh~---------  261 (506)
T KOG0289|consen  218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---------------------------ILATLKGHT---------  261 (506)
T ss_pred             CCCCeeEEeecCCCCcceecCCCCceEEEecchhh---------------------------hhhhccCcc---------
Confidence            35678899999887899999999999999988766                           457899999         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ..|+.+.|  +++...+++++.|..|++|..........                                      
T Consensus       262 ---kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~~--------------------------------------  298 (506)
T KOG0289|consen  262 ---KKITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPTS--------------------------------------  298 (506)
T ss_pred             ---eEEEEEEe--ccchhheeecCCcceEEeeccccccCccc--------------------------------------
Confidence               88999999  57878899999999999999866432211                                      


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                             ...|..+|+.+..+|.|+||+++ .|++..+.|++ .+..+....     -+...-.
T Consensus       299 -----------------------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~-~g~~lt~vs-----~~~s~v~  349 (506)
T KOG0289|consen  299 -----------------------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS-SGSQLTVVS-----DETSDVE  349 (506)
T ss_pred             -----------------------cccccccceeeeeccCCcEEEEecCCceEEEEEcc-CCcEEEEEe-----eccccce
Confidence                                   15799999999999999999999 99999999999 555554321     1123355


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~  348 (457)
                      +++.+|+||| .+|.+|..||.|++||+.+....                 ..|.+|.++|..++|+.+|-|||++.| +
T Consensus       350 ~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~-----------------a~Fpght~~vk~i~FsENGY~Lat~add~  411 (506)
T KOG0289|consen  350 YTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNV-----------------AKFPGHTGPVKAISFSENGYWLATAADDG  411 (506)
T ss_pred             eEEeeEcCCc-eEEeccCCCceEEEEEcCCcccc-----------------ccCCCCCCceeEEEeccCceEEEEEecCC
Confidence            8999999999 99999999999999999886321                 235678999999999999999999876 8


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC-CceeeEEecCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-SAGGITVEAGK  427 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~  427 (457)
                      .|++||++. .+.+.++...+..              ++.+++|.+.|.+|+.++.|=.|++++-.+. -.....+..|.
T Consensus       412 ~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s  476 (506)
T KOG0289|consen  412 SVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS  476 (506)
T ss_pred             eEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc
Confidence            899999986 5666666654431              2258999999999999988877777764432 24566777888


Q ss_pred             CcceeeeeccCCcceeccccccccccc
Q 012721          428 NENRKPILQAAPRARRSSLSNLTRGLY  454 (457)
Q Consensus       428 ~~v~~~~~~p~~~~~~~~~~~~~~~~~  454 (457)
                      +..+.|.|.....-..+  ++.+|..|
T Consensus       477 g~st~v~Fg~~aq~l~s--~smd~~l~  501 (506)
T KOG0289|consen  477 GLSTGVRFGEHAQYLAS--TSMDAILR  501 (506)
T ss_pred             cccceeeecccceEEee--ccchhheE
Confidence            99999999876555444  55555544

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.5e-27  Score=203.92  Aligned_cols=241  Identities=19%  Similarity=0.285  Sum_probs=194.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      .+.|++++|..||++||.|+..|.|+|||..+..                           .+..+.+|+          
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~---------------------------iLR~~~ah~----------  110 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV---------------------------ILRQLYAHQ----------  110 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccHH---------------------------HHHHHhhcc----------
Confidence            5689999999999999999999999999955422                           456788999          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        .+|..+.|+| .++..|++|+.|+.+++||+.+......                                       
T Consensus       111 --apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~~~---------------------------------------  148 (487)
T KOG0310|consen  111 --APVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQAE---------------------------------------  148 (487)
T ss_pred             --CceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEEEE---------------------------------------
Confidence              8999999974 5677888999999999999988763111                                       


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                            +.+|++.|.|.+|+|. +..+++| +||.|++||.+.....+..        -.|..+
T Consensus       149 ----------------------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e--------lnhg~p  198 (487)
T KOG0310|consen  149 ----------------------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE--------LNHGCP  198 (487)
T ss_pred             ----------------------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE--------ecCCCc
Confidence                                  2789999999999995 5578888 9999999999955333322        348899


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~  348 (457)
                      |..+.+-|.| .+|++++ ...|++||+.+|...      ...          +..|...|+|+.+..++..|++++ |+
T Consensus       199 Ve~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~ql------l~~----------~~~H~KtVTcL~l~s~~~rLlS~sLD~  260 (487)
T KOG0310|consen  199 VESVLALPSG-SLIASAG-GNSVKVWDLTTGGQL------LTS----------MFNHNKTVTCLRLASDSTRLLSGSLDR  260 (487)
T ss_pred             eeeEEEcCCC-CEEEEcC-CCeEEEEEecCCcee------hhh----------hhcccceEEEEEeecCCceEeeccccc
Confidence            9999999998 8888876 457999999966422      111          123678999999999999999887 69


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      .|++||+.. -+.+..+......                .+++.+||++.++.|..||.+.+=+....
T Consensus       261 ~VKVfd~t~-~Kvv~s~~~~~pv----------------Lsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  261 HVKVFDTTN-YKVVHSWKYPGPV----------------LSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             ceEEEEccc-eEEEEeeecccce----------------eeEEecCCCceEEEecccceeeeehhhcc
Confidence            999999753 7777777755543                69999999999999999999877755444

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2.4e-27  Score=205.45  Aligned_cols=266  Identities=16%  Similarity=0.253  Sum_probs=195.5

Q ss_pred             ccccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      .+.|.+.|..+.+-|.. .++|+++..+.|.|||.......+.                 ...+..+-..|.||.     
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----------------~~~~~~Pdl~L~gH~-----  177 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-----------------ASGECRPDLRLKGHE-----  177 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-----------------ccccCCCceEEEeec-----
Confidence            35699999999999965 6778888999999999876543200                 000233445788898     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             +.-.+++|.+. ....+++++.|++|.+||+........                                  
T Consensus       178 -------~eg~glsWn~~-~~g~Lls~~~d~~i~lwdi~~~~~~~~----------------------------------  215 (422)
T KOG0264|consen  178 -------KEGYGLSWNRQ-QEGTLLSGSDDHTICLWDINAESKEDK----------------------------------  215 (422)
T ss_pred             -------ccccccccccc-cceeEeeccCCCcEEEEeccccccCCc----------------------------------
Confidence                   44677999643 344899999999999999986532100                                  


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCC-cceeeeeecCCCcc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNM  263 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~  263 (457)
                                         ...+...+ .+|...|..++|++- ..+|+++ +|+.+.|||++.. .+..       ...
T Consensus       216 -------------------~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~-------~~~  268 (422)
T KOG0264|consen  216 -------------------VVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS-------HSV  268 (422)
T ss_pred             -------------------cccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc-------ccc
Confidence                               00112222 799999999999984 4556666 9999999999941 1111       236


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe-E
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-L  342 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l  342 (457)
                      .+|.+.+.|++|+|.+..+||+||.|++|.+||+|+.+..                ...+.+|...|.+|.|+|...- |
T Consensus       269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~----------------lh~~e~H~dev~~V~WSPh~etvL  332 (422)
T KOG0264|consen  269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP----------------LHTFEGHEDEVFQVEWSPHNETVL  332 (422)
T ss_pred             cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC----------------ceeccCCCcceEEEEeCCCCCcee
Confidence            7899999999999988789999999999999999986421                1235678899999999997654 5


Q ss_pred             EE-EecCcEEEEeccCCCC-------------ceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCc
Q 012721          343 LS-RDYMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNL  407 (457)
Q Consensus       343 ~s-~~~~~i~~wd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~  407 (457)
                      |+ |.|+.+.+||+..-++             ++..-.||...+               ..+.|+|... .|+++++|+.
T Consensus       333 ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~  397 (422)
T KOG0264|consen  333 ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNI  397 (422)
T ss_pred             EecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCce
Confidence            54 4569999999964222             234555666554               6899999865 5678999999


Q ss_pred             EEEEecCC
Q 012721          408 LRIFSHGV  415 (457)
Q Consensus       408 i~iw~~~~  415 (457)
                      +.||++..
T Consensus       398 LqIW~~s~  405 (422)
T KOG0264|consen  398 LQIWQMAE  405 (422)
T ss_pred             EEEeeccc
Confidence            99999873

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-27  Score=215.78  Aligned_cols=279  Identities=20%  Similarity=0.319  Sum_probs=220.5

Q ss_pred             cccCCceE---EEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           29 LQDVDIVS---AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        29 ~~h~~~V~---~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      .+|...|.   ++..+. .++||+||++||.|++|+.......                     |+..++..++.|.   
T Consensus        18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~---------------------~s~~~~asme~Hs---   73 (735)
T KOG0308|consen   18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE---------------------PSTPYIASMEHHS---   73 (735)
T ss_pred             hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCC---------------------cccchhhhhhhhH---
Confidence            45666777   566654 5678999999999999998755421                     2334567788888   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                               +.|+.+..+  .+++.|+++|.|-+|++|+...+..                                   
T Consensus        74 ---------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~-----------------------------------  107 (735)
T KOG0308|consen   74 ---------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNT-----------------------------------  107 (735)
T ss_pred             ---------hHHhhHHhh--cCCCceEEecCCceEEEeecccCcc-----------------------------------
Confidence                     889999884  6788999999999999999876531                                   


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEe-CCCCCEEEEe-CCCeEEEEEcCCCcc-eeeeeecCC-
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKP-  260 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~-  260 (457)
                                             -|+.++ ..|.+.|.|+++ .++...+|+| -|+.|.+||++.... ....+.... 
T Consensus       108 -----------------------~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen  108 -----------------------FCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             -----------------------hhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence                                   122222 689999999999 7888899998 999999999994321 111111111 


Q ss_pred             Cccc-CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721          261 SNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (457)
Q Consensus       261 ~~~~-~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g  339 (457)
                      ..+. ++...|++++.++.| ..|++|+..+.|++||.++++      ++++.           .+|...|..+..++||
T Consensus       164 ~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~------kimkL-----------rGHTdNVr~ll~~dDG  225 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK------KIMKL-----------RGHTDNVRVLLVNDDG  225 (735)
T ss_pred             ccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc------ceeee-----------eccccceEEEEEcCCC
Confidence            1233 888999999999999 999999999999999999976      44444           6899999999999999


Q ss_pred             CeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721          340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  418 (457)
Q Consensus       340 ~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~  418 (457)
                      ..+++++ ||+|++||+.. .+++.++..|...+               +++..+|+-..+++|+.||.|+.=|+.+. .
T Consensus       226 t~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~-~  288 (735)
T KOG0308|consen  226 TRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNIYRTDLRNP-A  288 (735)
T ss_pred             CeEeecCCCceEEeeeccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcEEecccCCc-h
Confidence            9999875 69999999985 88999999999875               68888999999999999999999999996 3


Q ss_pred             eeeEEecCCCcceeeeec
Q 012721          419 GGITVEAGKNENRKPILQ  436 (457)
Q Consensus       419 ~~~~~~~~~~~v~~~~~~  436 (457)
                      ....+....+||..+..+
T Consensus       289 ~~tlick~daPv~~l~~~  306 (735)
T KOG0308|consen  289 KSTLICKEDAPVLKLHLH  306 (735)
T ss_pred             hheEeecCCCchhhhhhc
Confidence            445555566777766665

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=3e-28  Score=194.97  Aligned_cols=245  Identities=15%  Similarity=0.233  Sum_probs=199.0

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      +..+|.++|++.+.+.+-..-|+++.|-+-+|||.-++..                                        
T Consensus        54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde----------------------------------------   93 (334)
T KOG0278|consen   54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE----------------------------------------   93 (334)
T ss_pred             eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh----------------------------------------
Confidence            3456999999999999988999999999999999888764                                        


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                      +.+++|+.-|.+++|  +.|.++|++|+.++.+++||++..+..                                    
T Consensus        94 lhsf~hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~Ap------------------------------------  135 (334)
T KOG0278|consen   94 LHSFEHKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAP------------------------------------  135 (334)
T ss_pred             hhhhhhhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCC------------------------------------
Confidence            234455577999999  789999999999999999998764321                                    


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                             ...+ .+|.+.|..+.|....+.|+++ +|++|++||.+ .+..++.+.        
T Consensus       136 -----------------------p~E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-Tgt~v~sL~--------  182 (334)
T KOG0278|consen  136 -----------------------PKEI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-TGTEVQSLE--------  182 (334)
T ss_pred             -----------------------chhh-cCCCCcceeEEEeccCceEEeeccCCceEEEEec-cCcEEEEEe--------
Confidence                                   1112 6899999999998888888887 99999999999 566666543        


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ....|+++.++++| .+|.+ ...+.|.+||..+-.++    +.++.              ...|.+..++|+...+++|
T Consensus       183 ~~s~VtSlEvs~dG-~ilTi-a~gssV~Fwdaksf~~l----Ks~k~--------------P~nV~SASL~P~k~~fVaG  242 (334)
T KOG0278|consen  183 FNSPVTSLEVSQDG-RILTI-AYGSSVKFWDAKSFGLL----KSYKM--------------PCNVESASLHPKKEFFVAG  242 (334)
T ss_pred             cCCCCcceeeccCC-CEEEE-ecCceeEEeccccccce----eeccC--------------ccccccccccCCCceEEec
Confidence            23678999999998 66655 45678999999886543    33333              3568999999999888888


Q ss_pred             ec-CcEEEEeccCCCCceeEe-eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721          346 DY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  418 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~  418 (457)
                      +. ..++.||..+ +..+..+ ++|.+++               .++.|+|||...++|++||+|+||.+..++.
T Consensus       243 ged~~~~kfDy~T-geEi~~~nkgh~gpV---------------hcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  243 GEDFKVYKFDYNT-GEEIGSYNKGHFGPV---------------HCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             CcceEEEEEeccC-CceeeecccCCCCce---------------EEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            65 9999999987 7777665 7777765               7999999999999999999999999987743

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=5.7e-26  Score=213.66  Aligned_cols=220  Identities=14%  Similarity=0.146  Sum_probs=164.3

Q ss_pred             CccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           27 EELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ....|.+.|++++|+| ++++||+|+.|++|+||++.+....                    ......+..+.+|.    
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--------------------~~~~~~l~~L~gH~----  125 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--------------------QNISDPIVHLQGHT----  125 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc--------------------cccCcceEEecCCC----
Confidence            3456999999999999 8899999999999999999765321                    00112456788898    


Q ss_pred             ccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          106 YLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                              ..|.+++|+  |+ +++|++++.|++|++||+.+++....+                               
T Consensus       126 --------~~V~~l~f~--P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-------------------------------  164 (493)
T PTZ00421        126 --------KKVGIVSFH--PSAMNVLASAGADMVVNVWDVERGKAVEVI-------------------------------  164 (493)
T ss_pred             --------CcEEEEEeC--cCCCCEEEEEeCCCEEEEEECCCCeEEEEE-------------------------------
Confidence                    889999994  55 468999999999999999887543221                               


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                                                    .+|...|.+++|+|++.+|+++ .|+.|++||++ .++.+..       +
T Consensus       165 ------------------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r-sg~~v~t-------l  206 (493)
T PTZ00421        165 ------------------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR-DGTIVSS-------V  206 (493)
T ss_pred             ------------------------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECC-CCcEEEE-------E
Confidence                                          5788899999999999999999 99999999999 4544433       4


Q ss_pred             cCCCCc-eEEEEEecCCccEEEEEc----cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721          264 DDLTEV-ITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (457)
Q Consensus       264 ~~~~~~-i~~v~~~p~~~~~l~~~~----~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  338 (457)
                      .+|... ...+.|.+++ ..+++++    .|+.|++||+++....   ......            .+...+....|+++
T Consensus       207 ~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~------------d~~~~~~~~~~d~d  270 (493)
T PTZ00421        207 EAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDL------------DQSSALFIPFFDED  270 (493)
T ss_pred             ecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEecc------------CCCCceEEEEEcCC
Confidence            566553 4567788887 5665543    5799999999875321   111111            11235666789999


Q ss_pred             CCeEEEEe--cCcEEEEeccCCCCceeEee
Q 012721          339 GQHLLSRD--YMNLKLWDIRMDSTPVATFK  366 (457)
Q Consensus       339 g~~l~s~~--~~~i~~wd~~~~~~~~~~~~  366 (457)
                      +.+|++++  |+.|++||+.. ++++....
T Consensus       271 ~~~L~lggkgDg~Iriwdl~~-~~~~~~~~  299 (493)
T PTZ00421        271 TNLLYIGSKGEGNIRCFELMN-ERLTFCSS  299 (493)
T ss_pred             CCEEEEEEeCCCeEEEEEeeC-CceEEEee
Confidence            99988764  69999999985 66655543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.6e-27  Score=210.36  Aligned_cols=236  Identities=16%  Similarity=0.253  Sum_probs=191.1

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      .-+|++..|-+-.+++++|+.|..|+||+..+.++                           +.+|.+|.          
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek---------------------------V~~FeAH~----------   97 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK---------------------------VKTFEAHS----------   97 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEeccccee---------------------------eEEeeccc----------
Confidence            45888899988889999999999999999998874                           57899999          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        +-|.+++.  +|...+++++|.|-+|++||.+.+=                                           
T Consensus        98 --DyIR~iav--HPt~P~vLtsSDDm~iKlW~we~~w-------------------------------------------  130 (794)
T KOG0276|consen   98 --DYIRSIAV--HPTLPYVLTSSDDMTIKLWDWENEW-------------------------------------------  130 (794)
T ss_pred             --cceeeeee--cCCCCeEEecCCccEEEEeeccCce-------------------------------------------
Confidence              67999999  5777899999999999999998651                                           


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                      .|.+++ .+|...|.+++|+| |.+.++++ -|++|++|.+. ...+..       ++++|...
T Consensus       131 ----------------a~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg-s~~~nf-------Tl~gHekG  185 (794)
T KOG0276|consen  131 ----------------ACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG-SPHPNF-------TLEGHEKG  185 (794)
T ss_pred             ----------------eeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcC-CCCCce-------eeeccccC
Confidence                            333444 89999999999999 67889998 99999999998 333333       37899999


Q ss_pred             eEEEEEecCC-ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721          270 ITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (457)
Q Consensus       270 i~~v~~~p~~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-  347 (457)
                      |.|+.+-+.| ..+|++|+.|.+|++||.++..+.    ++             +.||...|+.+.|+|.-.++++|++ 
T Consensus       186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV----~T-------------LeGHt~Nvs~v~fhp~lpiiisgsED  248 (794)
T KOG0276|consen  186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV----QT-------------LEGHTNNVSFVFFHPELPIIISGSED  248 (794)
T ss_pred             cceEEeccCCCcceEEecCCCceEEEeecchHHHH----HH-------------hhcccccceEEEecCCCcEEEEecCC
Confidence            9999998755 259999999999999999997543    33             3557889999999999999999986 


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEE
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  409 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~  409 (457)
                      |+++||+..+ -+...++...-..+               ++++-.+.++.++.|.++|.|.
T Consensus       249 GTvriWhs~T-y~lE~tLn~gleRv---------------W~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  249 GTVRIWNSKT-YKLEKTLNYGLERV---------------WCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             ccEEEecCcc-eehhhhhhcCCceE---------------EEEeecCCCCeEEEeccCCcEE
Confidence            9999999875 55544444333332               5677667777777777666553

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.7e-27  Score=201.48  Aligned_cols=246  Identities=17%  Similarity=0.186  Sum_probs=191.5

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee-ccCCcccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFD  105 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~  105 (457)
                      +...|..+|.-+.||||.++|++++.+..+++||+.++...                           ..+ .+|.    
T Consensus       264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~---------------------------~~y~~~~~----  312 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR---------------------------HLYPSGLG----  312 (519)
T ss_pred             eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh---------------------------hhcccCcC----
Confidence            45669999999999999999999999999999999998853                           111 1222    


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                              ..+.+.+|  .|||..+++|+.|+++..||++......                                  
T Consensus       313 --------~S~~sc~W--~pDg~~~V~Gs~dr~i~~wdlDgn~~~~----------------------------------  348 (519)
T KOG0293|consen  313 --------FSVSSCAW--CPDGFRFVTGSPDRTIIMWDLDGNILGN----------------------------------  348 (519)
T ss_pred             --------CCcceeEE--ccCCceeEecCCCCcEEEecCCcchhhc----------------------------------
Confidence                    67899999  5899999999999999999997653211                                  


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                   |.              .-....|.+++..+||+++++. .|..|++++.+ ......+        -
T Consensus       349 -------------W~--------------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e-~~~dr~l--------i  392 (519)
T KOG0293|consen  349 -------------WE--------------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE-ARVDRGL--------I  392 (519)
T ss_pred             -------------cc--------------ccccceeEEEEEcCCCcEEEEEecccceeeechh-hhhhhcc--------c
Confidence                         10              1122468899999999999988 99999999998 3333322        1


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLL  343 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~  343 (457)
                      .-..+|++++.+.++ +++++.-.+..+++||++..+..    +.+.+|..           ...+-.-+|.. +..+++
T Consensus       393 se~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv----~kY~Ghkq-----------~~fiIrSCFgg~~~~fia  456 (519)
T KOG0293|consen  393 SEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLV----RKYFGHKQ-----------GHFIIRSCFGGGNDKFIA  456 (519)
T ss_pred             cccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHH----HHhhcccc-----------cceEEEeccCCCCcceEE
Confidence            233679999999999 99999999999999999965433    33333111           12344445653 558999


Q ss_pred             EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCC
Q 012721          344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~  415 (457)
                      +|++ +.|+||+... ++++..+.+|...+               .+++|+|. ..++|+|++||+|+||....
T Consensus       457 SGSED~kvyIWhr~s-gkll~~LsGHs~~v---------------NcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  457 SGSEDSKVYIWHRIS-GKLLAVLSGHSKTV---------------NCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ecCCCceEEEEEccC-CceeEeecCCccee---------------eEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            9986 9999999986 99999999999876               58999995 56899999999999998764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.6e-27  Score=186.03  Aligned_cols=261  Identities=17%  Similarity=0.232  Sum_probs=199.7

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      +.+|.+.|..+...-.|+.|||++.|++|+|+.......                        .+++.+|.||.      
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------s~ll~~L~Gh~------   56 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------SKLLAELTGHS------   56 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------ceeeeEecCCC------
Confidence            356999999999988999999999999999999986652                        24788999999      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ++|..++|..-.-|.+|++++.||.|.||.-.+++..+...                                 
T Consensus        57 ------GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e---------------------------------   97 (299)
T KOG1332|consen   57 ------GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE---------------------------------   97 (299)
T ss_pred             ------CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh---------------------------------
Confidence                  99999999622358999999999999999988885543321                                 


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                               . ..|...|++++|.|.  |-.|+++ .||.|.|.+.+..+.-...     ....
T Consensus        98 -------------------------~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~-----ki~~  146 (299)
T KOG1332|consen   98 -------------------------H-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS-----KIVF  146 (299)
T ss_pred             -------------------------h-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch-----hhhh
Confidence                                     1 679999999999884  5677777 9999999999854221111     1256


Q ss_pred             CCCCceEEEEEecC---C----------ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721          265 DLTEVITSAEFHPI---Y----------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (457)
Q Consensus       265 ~~~~~i~~v~~~p~---~----------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  331 (457)
                      .|.-.+++++|.|.   |          .+.|++|+.|+.|+||+...+.      -.+         ..++.+|.+.|.
T Consensus       147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~------w~~---------e~~l~~H~dwVR  211 (299)
T KOG1332|consen  147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS------WKL---------ERTLEGHKDWVR  211 (299)
T ss_pred             ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc------hhh---------hhhhhhcchhhh
Confidence            79999999999986   2          1369999999999999988752      111         123678999999


Q ss_pred             EEEEccCC----CeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          332 DIKFANDG----QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       332 ~~~~s~~g----~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                      .++|.|.-    .+||+++. |++.||..+.+..+...-..+.-.          +   .+.+++||+.|++|+.++.|+
T Consensus       212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~----------~---~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP----------D---VVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC----------c---ceEEEEEeccccEEEEecCCc
Confidence            99999963    57888875 999999876432222111111111          0   126999999999999999999


Q ss_pred             cEEEEecCCC
Q 012721          407 LLRIFSHGVG  416 (457)
Q Consensus       407 ~i~iw~~~~~  416 (457)
                      .|.+|.-+..
T Consensus       279 kvtlwke~~~  288 (299)
T KOG1332|consen  279 KVTLWKENVD  288 (299)
T ss_pred             EEEEEEeCCC
Confidence            9999986543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.2e-26  Score=187.69  Aligned_cols=252  Identities=17%  Similarity=0.281  Sum_probs=188.5

Q ss_pred             cchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCc
Q 012721           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (457)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (457)
                      ...|.+.+.|..      -.|.++|++++.+  +.++|+|+.|-+|+|||+.....                        
T Consensus        28 s~~~~l~~lF~~------~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q------------------------   75 (362)
T KOG0294|consen   28 SVKPTLKPLFAF------SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ------------------------   75 (362)
T ss_pred             ccceeeeccccc------cccccceeEEEec--ceeEeccCCCCcEEEEeccchhh------------------------
Confidence            334555554432      4499999999999  99999999999999999987764                        


Q ss_pred             cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccc
Q 012721           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (457)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (457)
                         +..+-.|.            +.|+++.|.+....+.|++|+.||.|.+|+...=...                    
T Consensus        76 ---lg~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~--------------------  120 (362)
T KOG0294|consen   76 ---LGILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL--------------------  120 (362)
T ss_pred             ---hcceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe--------------------
Confidence               24566677            8999999954333348999999999999997653222                    


Q ss_pred             ccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC
Q 012721          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (457)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~  249 (457)
                                                              ..+ ++|.+.|+.++++|.+++-++- .|+.+++||+- .
T Consensus       121 ----------------------------------------~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV-~  158 (362)
T KOG0294|consen  121 ----------------------------------------KSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV-R  158 (362)
T ss_pred             ----------------------------------------eee-cccccccceeEecCCCceEEEEcCCceeeeehhh-c
Confidence                                                    222 7899999999999999987776 99999999998 4


Q ss_pred             cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      ++.-.+..+        ....+.+.|+|.| .+++.+..+ .|-+|.+...++.    .....              ...
T Consensus       159 Gr~a~v~~L--------~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~--------------~~r  210 (362)
T KOG0294|consen  159 GRVAFVLNL--------KNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIEN--------------PKR  210 (362)
T ss_pred             Cccceeecc--------CCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhc--------------ccc
Confidence            544433222        2334559999999 877777665 4899998875322    11111              134


Q ss_pred             eEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEE--EcCCCcEEEEEeCCC
Q 012721          330 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--VSGDGLHFATGSYSN  406 (457)
Q Consensus       330 v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~d~~~l~s~~~dg  406 (457)
                      +.++.|.. +.+|++|. ++.|.+||.+. ..++..+.+|...+.               ++.  -.|++.+|+|++.||
T Consensus       211 ~l~~~~l~-~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  211 ILCATFLD-GSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             ceeeeecC-CceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCCceEEEEeccCc
Confidence            67777765 44566654 59999999985 889999999998863               343  357889999999999


Q ss_pred             cEEEEecCCC
Q 012721          407 LLRIFSHGVG  416 (457)
Q Consensus       407 ~i~iw~~~~~  416 (457)
                      .|+|||++..
T Consensus       274 ~I~vWd~~~~  283 (362)
T KOG0294|consen  274 FIKVWDIDME  283 (362)
T ss_pred             eEEEEEcccc
Confidence            9999999865

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.7e-25  Score=184.73  Aligned_cols=279  Identities=14%  Similarity=0.128  Sum_probs=212.1

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      .+.|++|.|+|.++.|++++-||++++|+.......                            ..-.|.          
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------------------------~~~~~~----------   54 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------------------------LKFKHG----------   54 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------------------------hheecC----------
Confidence            579999999999999999999999999999876431                            112233          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        .++.+.+|   .+...+++|+.||.|+++|+.++....+                                       
T Consensus        55 --~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~~~~~~i---------------------------------------   90 (323)
T KOG1036|consen   55 --APLLDCAF---ADESTIVTGGLDGQVRRYDLNTGNEDQI---------------------------------------   90 (323)
T ss_pred             --Cceeeeec---cCCceEEEeccCceEEEEEecCCcceee---------------------------------------
Confidence              88999999   3466899999999999999998865433                                       


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                             ..|..+|.|+.+++....+++| .|++|++||.+ .......+        .....|
T Consensus        91 -----------------------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~~~~~~--------d~~kkV  138 (323)
T KOG1036|consen   91 -----------------------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR-NKVVVGTF--------DQGKKV  138 (323)
T ss_pred             -----------------------ccCCCceEEEEeeccCCeEEEcccCccEEEEecc-cccccccc--------ccCceE
Confidence                                   5799999999999977788888 99999999998 33333221        223478


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCc
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  349 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~  349 (457)
                      .++....   +.|++|..|..+.+||+++.....      .. .+        ....-.+.++++-|++.-.++++ +|.
T Consensus       139 y~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~------q~-re--------S~lkyqtR~v~~~pn~eGy~~sSieGR  200 (323)
T KOG1036|consen  139 YCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPF------QR-RE--------SSLKYQTRCVALVPNGEGYVVSSIEGR  200 (323)
T ss_pred             EEEeccC---CEEEEeecCceEEEEEcccccchh------hh-cc--------ccceeEEEEEEEecCCCceEEEeecce
Confidence            8877653   679999999999999999865321      10 00        11124688999999776555554 699


Q ss_pred             EEEEeccCC---CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          350 LKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       350 i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      |.+=.++..   .+.-..|+.|....      ...+.+++|.+++|+|-...+|||+.||.|.+||+.+. +.+..+...
T Consensus       201 VavE~~d~s~~~~skkyaFkCHr~~~------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~~  273 (323)
T KOG1036|consen  201 VAVEYFDDSEEAQSKKYAFKCHRLSE------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAKY  273 (323)
T ss_pred             EEEEccCCchHHhhhceeEEeeeccc------CCceEEEEeceeEeccccceEEecCCCceEEEccCcch-hhhhhccCC
Confidence            887666542   13345677776543      23456778899999999999999999999999999988 566667666


Q ss_pred             CCcceeeeeccCCcceecccccc
Q 012721          427 KNENRKPILQAAPRARRSSLSNL  449 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~~~~~~  449 (457)
                      ...|..++|+-+|...+-+-+..
T Consensus       274 ~~SI~slsfs~dG~~LAia~sy~  296 (323)
T KOG1036|consen  274 ETSISSLSFSMDGSLLAIASSYQ  296 (323)
T ss_pred             CCceEEEEeccCCCeEEEEechh
Confidence            77899999999998888755543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=4.3e-26  Score=214.67  Aligned_cols=253  Identities=17%  Similarity=0.291  Sum_probs=211.6

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      +...+.+..|.  +.++++++.+++|++|+...+..                          ....+.||.         
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~--------------------------i~~~l~GH~---------  249 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL--------------------------ILTRLVGHF---------  249 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceE--------------------------EEeeccCCC---------
Confidence            57789999999  67899999999999999987763                          334499999         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         +.|.++++.  ..+.++++|+.|.++++||..+|.+..++                                     
T Consensus       250 ---g~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-------------------------------------  287 (537)
T KOG0274|consen  250 ---GGVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECTHSL-------------------------------------  287 (537)
T ss_pred             ---CCceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEEEEe-------------------------------------
Confidence               899999993  35779999999999999999998776553                                     


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                              .+|...|.++...  ...+++| .|.+|++|++. .+..+.+       +.+|.++
T Consensus       288 ------------------------~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l-------~~~h~~~  333 (537)
T KOG0274|consen  288 ------------------------QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNL-------LRGHTGP  333 (537)
T ss_pred             ------------------------cCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEE-------ecccccc
Confidence                                    6899999998875  5567777 99999999999 7777776       5669999


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~  348 (457)
                      |.++..+  + .++++|+.|++|++||+.+++..    +.             +.+|...|.++.+.+. .++++|+ |+
T Consensus       334 V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl----~s-------------l~gH~~~V~sl~~~~~-~~~~Sgs~D~  392 (537)
T KOG0274|consen  334 VNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCL----KS-------------LSGHTGRVYSLIVDSE-NRLLSGSLDT  392 (537)
T ss_pred             EEEEEec--C-CEEEEEecCceEEEEEhhhceee----ee-------------ecCCcceEEEEEecCc-ceEEeeeecc
Confidence            9999998  5 79999999999999999987544    22             4568899999988866 7888887 59


Q ss_pred             cEEEEeccCCC-CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec-C
Q 012721          349 NLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-G  426 (457)
Q Consensus       349 ~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~  426 (457)
                      .|++||++. . +++..+.+|...+                 -.....+++|++++.|++|++||..++ .+..++++ |
T Consensus       393 ~IkvWdl~~-~~~c~~tl~~h~~~v-----------------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~  453 (537)
T KOG0274|consen  393 TIKVWDLRT-KRKCIHTLQGHTSLV-----------------SSLLLRDNFLVSSSADGTIKLWDAEEG-ECLRTLEGRH  453 (537)
T ss_pred             ceEeecCCc-hhhhhhhhcCCcccc-----------------cccccccceeEeccccccEEEeecccC-ceeeeeccCC
Confidence            999999986 6 7999999998764                 223346789999999999999999999 77888888 6


Q ss_pred             CCcceeeeec
Q 012721          427 KNENRKPILQ  436 (457)
Q Consensus       427 ~~~v~~~~~~  436 (457)
                      ...+..+.+.
T Consensus       454 ~~~v~~l~~~  463 (537)
T KOG0274|consen  454 VGGVSALALG  463 (537)
T ss_pred             cccEEEeecC
Confidence            7777777765

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=3.7e-26  Score=215.08  Aligned_cols=255  Identities=16%  Similarity=0.235  Sum_probs=203.0

Q ss_pred             hhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccc
Q 012721           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR   92 (457)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (457)
                      .|+..+.+..  .....+|.+.|++++|..-+.+|++|+.|.++++||+.+++                           
T Consensus       232 ~~~~~~~~~i--~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~---------------------------  282 (537)
T KOG0274|consen  232 LWDLNNGYLI--LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE---------------------------  282 (537)
T ss_pred             EeecccceEE--EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc---------------------------
Confidence            3544443332  23356799999999999878999999999999999988776                           


Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (457)
                      +...+.+|.            ..|.++..    ...++++|+.|.+|++|+++++..+.+.                   
T Consensus       283 C~~~l~gh~------------stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~-------------------  327 (537)
T KOG0274|consen  283 CTHSLQGHT------------SSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLL-------------------  327 (537)
T ss_pred             EEEEecCCC------------ceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEe-------------------
Confidence            778999999            78999887    3457888999999999999988766542                   


Q ss_pred             ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc
Q 012721          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  251 (457)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~  251 (457)
                                                                .+|..+|+++..+  +.++++| .|++|++||+. ..+
T Consensus       328 ------------------------------------------~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~  362 (537)
T KOG0274|consen  328 ------------------------------------------RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGK  362 (537)
T ss_pred             ------------------------------------------ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hce
Confidence                                                      4699999999997  7889998 99999999999 778


Q ss_pred             eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCC-eeeccccccccccccccCcccceeccccce
Q 012721          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASI  330 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  330 (457)
                      ++..       +.+|...|+++.+.+.  +.+++|+.|++|++||+++. ++.    .++             .+|.+-+
T Consensus       363 cl~s-------l~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~----~tl-------------~~h~~~v  416 (537)
T KOG0274|consen  363 CLKS-------LSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCI----HTL-------------QGHTSLV  416 (537)
T ss_pred             eeee-------ecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhh----hhh-------------cCCcccc
Confidence            8865       7899999999988774  67999999999999999997 322    333             4456666


Q ss_pred             EEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeec-cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721          331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  408 (457)
Q Consensus       331 ~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i  408 (457)
                      ..+.+  .+++|++++ |++|++||... ++++..+.++ ...+               ..+++.  ...+++++.||++
T Consensus       417 ~~l~~--~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~v---------------~~l~~~--~~~il~s~~~~~~  476 (537)
T KOG0274|consen  417 SSLLL--RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGGV---------------SALALG--KEEILCSSDDGSV  476 (537)
T ss_pred             ccccc--ccceeEeccccccEEEeeccc-CceeeeeccCCcccE---------------EEeecC--cceEEEEecCCee
Confidence            55544  478899876 59999999986 8888888884 3332               344443  4678899999999


Q ss_pred             EEEecCCCCceeeEE
Q 012721          409 RIFSHGVGSAGGITV  423 (457)
Q Consensus       409 ~iw~~~~~~~~~~~~  423 (457)
                      ++||++++ .....+
T Consensus       477 ~l~dl~~~-~~~~~l  490 (537)
T KOG0274|consen  477 KLWDLRSG-TLIRTL  490 (537)
T ss_pred             EEEecccC-chhhhh
Confidence            99999999 444433

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=2e-25  Score=183.07  Aligned_cols=303  Identities=17%  Similarity=0.235  Sum_probs=211.2

Q ss_pred             ccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        30 ~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .|.+.|+++...+ .|+|+++|+.||.|.+||++.....    ..-..+.++-|.+.        ...-.+|.       
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~----e~s~li~k~~c~v~--------~~h~~~Hk-------  101 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY----EASGLIAKHKCIVA--------KQHENGHK-------  101 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccch----hhccceeheeeecc--------ccCCccce-------
Confidence            4999999999998 6899999999999999999865421    00001111111000        00112333       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           -.|..+.|.|... .+|.+++.|.++++||.++-+....+.                                  
T Consensus       102 -----y~iss~~WyP~Dt-GmFtssSFDhtlKVWDtnTlQ~a~~F~----------------------------------  141 (397)
T KOG4283|consen  102 -----YAISSAIWYPIDT-GMFTSSSFDHTLKVWDTNTLQEAVDFK----------------------------------  141 (397)
T ss_pred             -----eeeeeeEEeeecC-ceeecccccceEEEeecccceeeEEee----------------------------------
Confidence                 7899999988444 499999999999999998865443322                                  


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                                  -.+.|++-+++|   ...++|+| .|-.|++-|+. .+....+       +.
T Consensus       142 ----------------------------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~-------Ls  185 (397)
T KOG4283|consen  142 ----------------------------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHT-------LS  185 (397)
T ss_pred             ----------------------------cCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceee-------ec
Confidence                                        233566666776   35577888 99999999999 6666654       79


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccc-cccCcccceeccccceEEEEEccCCCeEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      +|...|.++.|+|.....|++|+.||.|++||++...-+   ..+++.|. ..+.....-..|.+.|..++|+.++.+++
T Consensus       186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~  262 (397)
T KOG4283|consen  186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA  262 (397)
T ss_pred             cccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence            999999999999988678999999999999999875322   14444433 22223335678999999999999999999


Q ss_pred             EE-ecCcEEEEeccCCCCceeEee--eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee
Q 012721          344 SR-DYMNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  420 (457)
Q Consensus       344 s~-~~~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~  420 (457)
                      +. .|..+++|+...+...+..+.  .|.....           +. ..+. +.+...++---.++.+.++++-++ ..+
T Consensus       263 ~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~-----------~~-~~~~-~~~s~vfv~~p~~~~lall~~~sg-s~i  328 (397)
T KOG4283|consen  263 SCGTDDRIRVWNMESGRNTLREFGPIIHNQTTS-----------FA-VHIQ-SMDSDVFVLFPNDGSLALLNLLEG-SFV  328 (397)
T ss_pred             hccCccceEEeecccCccccccccccccccccc-----------ce-EEEe-ecccceEEEEecCCeEEEEEccCc-eEE
Confidence            75 579999999976333332221  1211110           00 1122 334445555556788999999998 678


Q ss_pred             eEEecCCCcceeeeeccCCcceec
Q 012721          421 ITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       421 ~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ..+..|-..+.+-++.|+...-.+
T Consensus       329 r~l~~h~k~i~c~~~~~~fq~~~t  352 (397)
T KOG4283|consen  329 RRLSTHLKRINCAAYRPDFEQCFT  352 (397)
T ss_pred             EeeecccceeeEEeecCchhhhhc
Confidence            888999888888888888655444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.95  E-value=6.6e-26  Score=188.17  Aligned_cols=299  Identities=14%  Similarity=0.178  Sum_probs=219.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (457)
                      -...+.|||||..|.+-+.|..+.+|++....-.+          +.+...     ......+++-..           .
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~----------~~~~~~-----~~~~~~~~r~~e-----------g  104 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSK----------KADGPL-----NFSKHLSYRYQE-----------G  104 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhccc----------CCCCcc-----ccccceeEEecc-----------C
Confidence            45678999999999999999999999985322100          000000     000001111111           1


Q ss_pred             CcEEEEEEEe-----cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          114 EKINRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       114 ~~V~~v~~~~-----s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                      ..|..-+|.+     .|+.+++++.+.+.-|++||.-+|+.......                                 
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~---------------------------------  151 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA---------------------------------  151 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhh---------------------------------
Confidence            4577778863     36678999999999999999999987654321                                 


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCC---CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                ..|..   ...+++|+|||..|++|....|++||+...+.....+....+...+
T Consensus       152 --------------------------ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~g  205 (406)
T KOG2919|consen  152 --------------------------YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFG  205 (406)
T ss_pred             --------------------------hhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccc
Confidence                                      12222   3458999999999999999999999995466544433222222344


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ..+-+.+++|+|..+..++.|+...++-||.-..+..+    .+             +.+|.+.|+.++|.++|+.|.+|
T Consensus       206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~l-------------lggh~gGvThL~~~edGn~lfsG  268 (406)
T KOG2919|consen  206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QL-------------LGGHGGGVTHLQWCEDGNKLFSG  268 (406)
T ss_pred             ccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----ee-------------ecccCCCeeeEEeccCcCeeccc
Confidence            56889999999988679999999999988876665432    12             34688999999999999999998


Q ss_pred             e--cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721          346 D--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  423 (457)
Q Consensus       346 ~--~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~  423 (457)
                      .  +..|..||++....++..+..|...-+        ..    .-....|++++|++|+.||.|++||++.-......+
T Consensus       269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TN--------QR----I~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~  336 (406)
T KOG2919|consen  269 ARKDDKILCWDIRYSRDPVYALERHVGDTN--------QR----ILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT  336 (406)
T ss_pred             ccCCCeEEEEeehhccchhhhhhhhccCcc--------ce----EEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence            6  489999999987788888877765211        11    246667899999999999999999999854678888


Q ss_pred             ecCCCcceeeeeccCCcceeccc
Q 012721          424 EAGKNENRKPILQAAPRARRSSL  446 (457)
Q Consensus       424 ~~~~~~v~~~~~~p~~~~~~~~~  446 (457)
                      ..++..++.|+++|.-|..+.+-
T Consensus       337 ~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  337 GNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             ccccccccceecCcccceeeecc
Confidence            99999999999999999988833

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=8.6e-25  Score=172.72  Aligned_cols=255  Identities=18%  Similarity=0.308  Sum_probs=189.0

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|+|.+|||+|++||+|++|.+|++........                             ...||+-||.    
T Consensus        87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~-----------------------------~~~g~dle~n----  133 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC-----------------------------NATGHDLEFN----  133 (350)
T ss_pred             ccCccEEEEEecCccCeEEecCCCceEEEEecccccc-----------------------------cccCcceeee----
Confidence            4889999999999999999999999999987654332                             1233332221    


Q ss_pred             ccccCcEEEEEEEecC--CCCEEEEee-CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          110 LEIEEKINRVRWCAAP--NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~--~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                       .|++.|..++|...|  .+.+|++++ .|..|.+-|...|+...                                   
T Consensus       134 -mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~-----------------------------------  177 (350)
T KOG0641|consen  134 -MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH-----------------------------------  177 (350)
T ss_pred             -ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce-----------------------------------
Confidence             133899999998533  355666654 56666666666654322                                   


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                               .+ .+|++.|.++ ++-++-.+++| .|.+|++||++ ...++++++.....-.-
T Consensus       178 -------------------------a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~gl  229 (350)
T KOG0641|consen  178 -------------------------AL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGL  229 (350)
T ss_pred             -------------------------ee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-ccceeeeccCcccCCCc
Confidence                                     22 6888888876 23368899999 99999999999 67777776543211111


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      .+..|.+++..|.| ++|++|-.|....+||++.+...       ..          +..|...|.++.|+|...|++++
T Consensus       230 essavaav~vdpsg-rll~sg~~dssc~lydirg~r~i-------q~----------f~phsadir~vrfsp~a~yllt~  291 (350)
T KOG0641|consen  230 ESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI-------QR----------FHPHSADIRCVRFSPGAHYLLTC  291 (350)
T ss_pred             ccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCcee-------ee----------eCCCccceeEEEeCCCceEEEEe
Confidence            23679999999999 99999999999999999998543       22          34578899999999999999999


Q ss_pred             ec-CcEEEEeccCC---CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          346 DY-MNLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       346 ~~-~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      +. ..|++-|+.-.   .-++.....|....               ..+.|+|..-.+++.+.|.++.+|-++
T Consensus       292 syd~~ikltdlqgdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cccceEEEeecccchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceEEEeccC
Confidence            86 99999998521   11233344555543               589999999999999999999999864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.2e-26  Score=189.60  Aligned_cols=305  Identities=16%  Similarity=0.203  Sum_probs=227.0

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..+|.+.|+.++-......+.+++.|.+.+||.++++.                           ++.++.||.      
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~---------------------------CL~~Y~GH~------  190 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA---------------------------CLATYTGHT------  190 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeecccc---------------------------ceeeecccc------
Confidence            45699999999999888899999999999999999887                           678899999      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEE----EeecCCCceeeeeeccccccccccCCCCCce
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----KEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                            +.|++|.|  ++.+.++++++.|++..||...-.-....    .......+..            ....  . .
T Consensus       191 ------GSVNsikf--h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e------------~sDe--~-~  247 (481)
T KOG0300|consen  191 ------GSVNSIKF--HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE------------HSDE--H-N  247 (481)
T ss_pred             ------cceeeEEe--ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh------------cccc--c-c
Confidence                  99999999  57888999999999999998332111000    0000000000            0000  0 0


Q ss_pred             eccCCcccccc-ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721          184 HGYHLEWTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       184 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                      -..++.-..++ .|+          .++..+ .+|...|.+..|-..|+.++++ .|.+..+||++ .++.+++      
T Consensus       248 ~d~d~~~~sD~~tiR----------vPl~~l-tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE-tge~v~~------  309 (481)
T KOG0300|consen  248 RDTDSSEKSDGHTIR----------VPLMRL-TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE-TGEVVNI------  309 (481)
T ss_pred             cccccccccCCceee----------eeeeee-eccccceEehhhhcCcceeeeeeccccceeeeec-cCceecc------
Confidence            00000000000 122          233333 7899999999999999999999 99999999999 6777765      


Q ss_pred             cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~  341 (457)
                       +.+|....+.++-+|.. +++++++.|-+.++||++..   ...+             ..|.+|...|+++.|.-+. .
T Consensus       310 -LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea---I~sV-------------~VFQGHtdtVTS~vF~~dd-~  370 (481)
T KOG0300|consen  310 -LTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA---IQSV-------------AVFQGHTDTVTSVVFNTDD-R  370 (481)
T ss_pred             -ccCcchhccccccCCcc-eEEEEeccCceeEeccchhh---ccee-------------eeecccccceeEEEEecCC-c
Confidence             78999999999999998 99999999999999999852   1111             2366788999999998765 5


Q ss_pred             EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc--
Q 012721          342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--  418 (457)
Q Consensus       342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~--  418 (457)
                      +++|+| .+|++||++....++.+++.....                ..++.+..+..|+.--++..|++||++-...  
T Consensus       371 vVSgSDDrTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR  434 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR  434 (481)
T ss_pred             eeecCCCceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence            666665 999999998767788888765543                4788888888999999999999999975421  


Q ss_pred             -eeeEEecCCCcceeeeeccCCcc
Q 012721          419 -GGITVEAGKNENRKPILQAAPRA  441 (457)
Q Consensus       419 -~~~~~~~~~~~v~~~~~~p~~~~  441 (457)
                       +...-++|..-|.+.+|.-+-|.
T Consensus       435 lPrtsRqgHrRMV~c~AW~eehp~  458 (481)
T KOG0300|consen  435 LPRTSRQGHRRMVTCCAWLEEHPA  458 (481)
T ss_pred             CCcccccccceeeeeeeccccCcc
Confidence             12245799999999999876554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=203.37  Aligned_cols=264  Identities=17%  Similarity=0.173  Sum_probs=189.4

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...|.+++|++.|..|++.+.....+|+|-++.+...    |.    +.+.       ...-+...+||.          
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e----~~----KGDQ-------YI~Dm~nTKGHi----------  268 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE----FS----KGDQ-------YIRDMYNTKGHI----------  268 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceeee----ee----ccch-------hhhhhhccCCce----------
Confidence            4589999999999888877777889999987655320    00    0000       011223346676          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccccee-EEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                        ..++|.+|+| .+...|++++.||++++|++++-+.. .++....                                 
T Consensus       269 --a~lt~g~whP-~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~---------------------------------  312 (641)
T KOG0772|consen  269 --AELTCGCWHP-DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP---------------------------------  312 (641)
T ss_pred             --eeeecccccc-CcccceEEecCCCcEEEEecCCchhheeEEeecc---------------------------------
Confidence              8899999976 34568999999999999999875432 2222111                                 


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC-
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-  268 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-  268 (457)
                                             ..+..-+++.++|++++++||+| .||+|.+|+........ .+.+    -.+|.. 
T Consensus       313 -----------------------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p-~~~v----k~AH~~g  364 (641)
T KOG0772|consen  313 -----------------------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP-VMKV----KDAHLPG  364 (641)
T ss_pred             -----------------------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc-ceEe----eeccCCC
Confidence                                   03455678999999999999999 99999999976222111 1111    356766 


Q ss_pred             -ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721          269 -VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (457)
Q Consensus       269 -~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-  346 (457)
                       .|+||.|+++| ++|++-+.|+++++||+++.+...   .++.+   .+.        .-+-+.++|||+.++|++|+ 
T Consensus       365 ~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL---~~~tg---L~t--------~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  365 QDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPL---NVRTG---LPT--------PFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             CceeEEEecccc-chhhhccCCCceeeeeccccccch---hhhcC---CCc--------cCCCCccccCCCceEEEeccc
Confidence             89999999999 999999999999999999876432   22222   000        13457889999999999874 


Q ss_pred             ----c--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721          347 ----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       347 ----~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                          .  |.+.+||..+ ...+..+......+               ..+.|+|.-+.|+.|+.||.+++|--.+
T Consensus       430 ~~~~~~~g~L~f~d~~t-~d~v~ki~i~~aSv---------------v~~~WhpkLNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  430 APNGMTAGTLFFFDRMT-LDTVYKIDISTASV---------------VRCLWHPKLNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             ccCCCCCceEEEEeccc-eeeEEEecCCCceE---------------EEEeecchhhheeeecCCCceEEEECcc
Confidence                2  7899999865 55666655544332               5899999999999999999999985444

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.6e-26  Score=191.86  Aligned_cols=246  Identities=15%  Similarity=0.249  Sum_probs=203.7

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec-cCCccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~  106 (457)
                      ...+.++|.|++||.|...||+|+.||.|++|.+.++.                           +++.|. +|+     
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~---------------------------ClRrFdrAHt-----  306 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ---------------------------CLRRFDRAHT-----  306 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEecch---------------------------HHHHhhhhhc-----
Confidence            34589999999999999999999999999999999887                           344454 677     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ..|+++.|  +.|+..+++++.|.++++.-+..|+..                                    
T Consensus       307 -------kGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~L------------------------------------  341 (508)
T KOG0275|consen  307 -------KGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCL------------------------------------  341 (508)
T ss_pred             -------cCeeEEEE--ccCcchhhcccccceEEEeccccchhH------------------------------------
Confidence                   89999999  799999999999999999988877543                                    


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                              +.+ .+|...|+...|.++|..++++ .||+|++|+.+ ..++..++..     .+
T Consensus       342 ------------------------KEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K-tteC~~Tfk~-----~~  390 (508)
T KOG0275|consen  342 ------------------------KEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK-TTECLSTFKP-----LG  390 (508)
T ss_pred             ------------------------HHh-cCccccccceEEcCCCCeEEEecCCccEEEecCc-chhhhhhccC-----CC
Confidence                                    333 7999999999999999999999 99999999999 6777776532     33


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ...+|.++-.-|..+..++++...++|.+-++...- .    +.|..   +..       ..+...+.+.+|.|.++.+.
T Consensus       391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-V----rsfsS---GkR-------EgGdFi~~~lSpkGewiYci  455 (508)
T KOG0275|consen  391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-V----RSFSS---GKR-------EGGDFINAILSPKGEWIYCI  455 (508)
T ss_pred             CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE-E----eeecc---CCc-------cCCceEEEEecCCCcEEEEE
Confidence            557788998889888899999999999999987531 1    33332   000       12456677899999999975


Q ss_pred             e-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       346 ~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      + |+.++.+...+ +++...+..|+..+               ..++-+|..+.||+-++||.+++|.
T Consensus       456 gED~vlYCF~~~s-G~LE~tl~VhEkdv---------------IGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  456 GEDGVLYCFSVLS-GKLERTLPVHEKDV---------------IGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccCcEEEEEEeec-Cceeeeeecccccc---------------cccccCcccchhhhhcccchhhhcC
Confidence            4 69999999975 88888898888654               5788999999999999999999995

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=2.7e-26  Score=196.34  Aligned_cols=241  Identities=15%  Similarity=0.240  Sum_probs=187.1

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      +-.++|+++.|.+++.++++++.|+.+++|+++..+                           ...+|.||+        
T Consensus       217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r---------------------------~~~TLsGHt--------  261 (459)
T KOG0288|consen  217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR---------------------------LRHTLSGHT--------  261 (459)
T ss_pred             ccCCCcceeeecCCCceEEeecCCCceeeeeccchh---------------------------hhhhhcccc--------
Confidence            456789999999999999999999999999998766                           457899999        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          +.|+++.|  ......+++++.|.+|++||+....+....-                                   
T Consensus       262 ----dkVt~ak~--~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-----------------------------------  300 (459)
T KOG0288|consen  262 ----DKVTAAKF--KLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-----------------------------------  300 (459)
T ss_pred             ----cceeeehh--hccccceeeccccchhhhhhhhhhheecccc-----------------------------------
Confidence                88999999  4454459999999999999998865543211                                   


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                               .  ...+..+..+  ...+++| .|+.|++||.+ ...+...+       +.+ +
T Consensus       301 -------------------------~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R-s~~~~~sv-------~~g-g  342 (459)
T KOG0288|consen  301 -------------------------P--GSQCNDIVCS--ISDVISGHFDKKVRFWDIR-SADKTRSV-------PLG-G  342 (459)
T ss_pred             -------------------------c--cccccceEec--ceeeeecccccceEEEecc-CCceeeEe-------ecC-c
Confidence                                     1  1123344443  5567888 99999999998 44454442       323 5


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-  347 (457)
                      .|+++..++++ ..+++++.|.++.+.|+++.+..    ..+..       .....+  ...+.+.|||++.|+++|+. 
T Consensus       343 ~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~----~~~sA-------~g~k~a--sDwtrvvfSpd~~YvaAGS~d  408 (459)
T KOG0288|consen  343 RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIR----QTFSA-------EGFKCA--SDWTRVVFSPDGSYVAAGSAD  408 (459)
T ss_pred             ceeeEeeccCC-eEEeeecCCCceeeeecccccEE----EEeec-------cccccc--cccceeEECCCCceeeeccCC
Confidence            89999999999 88888899999999999997654    23322       111222  34889999999999999974 


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      |.|+||++.+ +++...+.......             .|++++|+|.|..|++++.++.+.+|.
T Consensus       409 gsv~iW~v~t-gKlE~~l~~s~s~~-------------aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  409 GSVYIWSVFT-GKLEKVLSLSTSNA-------------AITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CcEEEEEccC-ceEEEEeccCCCCc-------------ceEEEEEcCCCchhhcccCCcceEecC
Confidence            9999999986 78877776544331             127999999999999999999999994

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.4e-25  Score=185.81  Aligned_cols=295  Identities=14%  Similarity=0.156  Sum_probs=191.1

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccc-cCCCcc---------------
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS-TSHPEY---------------   91 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------   91 (457)
                      ...|.+.|++++|+.||++|||++.|++|+||++++-...  .+.|++.-...+.++- .+.|.-               
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~--eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK--EHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh--hhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            3459999999999999999999999999999998764321  1222221111111111 222211               


Q ss_pred             -ceeeeeccCC-cccccccc--c--cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeee
Q 012721           92 -RYKTEFQSHE-PEFDYLKS--L--EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (457)
Q Consensus        92 -~~~~~~~~h~-~~~~~~~~--~--~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  165 (457)
                       .....-.|.- ..|.....  +  .|...|..+-.  ..++.+|++++.|..|.+|++. |+.+..+.           
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~id-----------  225 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSID-----------  225 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeec-----------
Confidence             1111111100 00000000  0  12234555555  4678899999999999999998 55443322           


Q ss_pred             eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEE
Q 012721          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (457)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iw  244 (457)
                                                                        .....-+..+.+|+|++++++ ..-.|++|
T Consensus       226 --------------------------------------------------tnq~~n~~aavSP~GRFia~~gFTpDVkVw  255 (420)
T KOG2096|consen  226 --------------------------------------------------TNQSSNYDAAVSPDGRFIAVSGFTPDVKVW  255 (420)
T ss_pred             --------------------------------------------------cccccccceeeCCCCcEEEEecCCCCceEE
Confidence                                                              112234467899999999998 88999999


Q ss_pred             EcCCCc--ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccc
Q 012721          245 NLEISD--QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (457)
Q Consensus       245 d~~~~~--~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (457)
                      .+--++  ....+.  +..++++|...|..++|+++. ..+++.+.||++++||+.-.-...+..++++.   .+   ..
T Consensus       256 E~~f~kdG~fqev~--rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~---g~---~p  326 (420)
T KOG2096|consen  256 EPIFTKDGTFQEVK--RVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE---GS---AP  326 (420)
T ss_pred             EEEeccCcchhhhh--hhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhc---CC---cc
Confidence            875221  111110  113578999999999999998 99999999999999998765444433344443   10   01


Q ss_pred             eeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721          323 FTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (457)
Q Consensus       323 ~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  401 (457)
                      +..-.+.-..+.++|+|+.||.+....++++..+. ++.+..+. .|+..+               .+++|+++|+++++
T Consensus       327 l~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~-g~~~~~~e~~h~~~I---------------s~is~~~~g~~~at  390 (420)
T KOG2096|consen  327 LHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED-GKDYPELEDIHSTTI---------------SSISYSSDGKYIAT  390 (420)
T ss_pred             hhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc-CccchhHHHhhcCce---------------eeEEecCCCcEEee
Confidence            11222334489999999999988878999999986 55554443 455544               69999999999998


Q ss_pred             EeCCCcEEEEecC
Q 012721          402 GSYSNLLRIFSHG  414 (457)
Q Consensus       402 ~~~dg~i~iw~~~  414 (457)
                      +++ ..+++..-.
T Consensus       391 cGd-r~vrv~~nt  402 (420)
T KOG2096|consen  391 CGD-RYVRVIRNT  402 (420)
T ss_pred             ecc-eeeeeecCC
Confidence            884 678877633

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.1e-25  Score=181.57  Aligned_cols=232  Identities=18%  Similarity=0.275  Sum_probs=188.1

Q ss_pred             eeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccccc
Q 012721           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (457)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (457)
                      +.+++|.            +.|.+|+|  +.+|..|++++.|+++++|+++..+......                    
T Consensus        14 r~~~~~~------------~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~~--------------------   59 (313)
T KOG1407|consen   14 RELQGHV------------QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKELV--------------------   59 (313)
T ss_pred             HHhhhhh------------hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhhc--------------------
Confidence            4567777            88999999  7899999999999999999998764322111                    


Q ss_pred             ccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcce
Q 012721          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC  252 (457)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~  252 (457)
                                                             ..+|.+.|-.++|+| ....|+++ .|.+|++||.+ .+++
T Consensus        60 ---------------------------------------~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r-~~k~   99 (313)
T KOG1407|consen   60 ---------------------------------------YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR-SGKC   99 (313)
T ss_pred             ---------------------------------------ccCCCcchhhheeCCCCCcceEEecCCceEEEEEec-cCcE
Confidence                                                   168999999999987 56678888 99999999999 5555


Q ss_pred             eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (457)
Q Consensus       253 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  332 (457)
                      ...+.        ....-.-+.|+|+| .+++.++.|..|.+.|.++.+...    ..+.              ...+..
T Consensus       100 ~~~i~--------~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~----~~~~--------------~~e~ne  152 (313)
T KOG1407|consen  100 TARIE--------TKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVN----EEQF--------------KFEVNE  152 (313)
T ss_pred             EEEee--------ccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceee----hhcc--------------cceeee
Confidence            54432        12333457899999 999999999999999999864321    1111              235778


Q ss_pred             EEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721          333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  411 (457)
Q Consensus       333 ~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw  411 (457)
                      ++|+.++.+++..+. |+|.|..... -+++..++.|....               .++.|+|+|+|+|+|+.|-.+.+|
T Consensus       153 ~~w~~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snC---------------icI~f~p~GryfA~GsADAlvSLW  216 (313)
T KOG1407|consen  153 ISWNNSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNC---------------ICIEFDPDGRYFATGSADALVSLW  216 (313)
T ss_pred             eeecCCCCEEEEecCCceEEEEeccc-cccccccccCCcce---------------EEEEECCCCceEeeccccceeecc
Confidence            899877777765554 9999999864 89999999998653               589999999999999999999999


Q ss_pred             ecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          412 SHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      |++.. .+...+.-+.-||+.++|+.++++.++
T Consensus       217 D~~EL-iC~R~isRldwpVRTlSFS~dg~~lAS  248 (313)
T KOG1407|consen  217 DVDEL-ICERCISRLDWPVRTLSFSHDGRMLAS  248 (313)
T ss_pred             ChhHh-hhheeeccccCceEEEEeccCcceeec
Confidence            99988 788999999999999999999999998

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-25  Score=178.56  Aligned_cols=220  Identities=21%  Similarity=0.306  Sum_probs=183.3

Q ss_pred             eeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccc
Q 012721           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (457)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (457)
                      ...+.+++            ++|..+.|  +-+|++.++++.|++|++|+...+.+...                     
T Consensus        10 ~~~l~~~q------------gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~likt---------------------   54 (307)
T KOG0316|consen   10 LSILDCAQ------------GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIKT---------------------   54 (307)
T ss_pred             ceeecccc------------cceEEEEE--ccCCCEEEEcCCCceEEeecccccceeee---------------------
Confidence            34567777            89999999  78999999999999999999888765543                     


Q ss_pred             cccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce
Q 012721          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC  252 (457)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~  252 (457)
                                                             + .+|..+|..++.+.|...|++| .|..+.+||++ .++.
T Consensus        55 ---------------------------------------Y-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-TGkv   93 (307)
T KOG0316|consen   55 ---------------------------------------Y-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-TGKV   93 (307)
T ss_pred             ---------------------------------------e-cCCCceeeeccccccccccccCCCCceEEEEEcc-cCee
Confidence                                                   3 6899999999999999999999 99999999999 6666


Q ss_pred             eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (457)
Q Consensus       253 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  332 (457)
                      .+-       +.+|.+.|..+.|+.+. ..+++|+.|.++++||.++...  .+++++.             .....|.+
T Consensus        94 ~Rr-------~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQild-------------ea~D~V~S  150 (307)
T KOG0316|consen   94 DRR-------FRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILD-------------EAKDGVSS  150 (307)
T ss_pred             eee-------cccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhh-------------hhcCceeE
Confidence            643       78999999999999998 9999999999999999998542  2233333             33567888


Q ss_pred             EEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721          333 IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  411 (457)
Q Consensus       333 ~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw  411 (457)
                      +..+  +..|++|+ ||+++.||++. +++...+.+|.-                 ++++|++|++..+.++-|+++++.
T Consensus       151 i~v~--~heIvaGS~DGtvRtydiR~-G~l~sDy~g~pi-----------------t~vs~s~d~nc~La~~l~stlrLl  210 (307)
T KOG0316|consen  151 IDVA--EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHPI-----------------TSVSFSKDGNCSLASSLDSTLRLL  210 (307)
T ss_pred             EEec--ccEEEeeccCCcEEEEEeec-ceeehhhcCCcc-----------------eeEEecCCCCEEEEeeccceeeec
Confidence            8876  66778876 59999999997 777666666543                 689999999999999999999999


Q ss_pred             ecCCCCceeeEEecCCCcceee
Q 012721          412 SHGVGSAGGITVEAGKNENRKP  433 (457)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~v~~~  433 (457)
                      |-.+| +.+....+|...-..+
T Consensus       211 Dk~tG-klL~sYkGhkn~eykl  231 (307)
T KOG0316|consen  211 DKETG-KLLKSYKGHKNMEYKL  231 (307)
T ss_pred             ccchh-HHHHHhcccccceeee
Confidence            99999 7888888887654433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=5.2e-25  Score=189.61  Aligned_cols=246  Identities=15%  Similarity=0.219  Sum_probs=193.3

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..+|+..|+.+.|+|+...+++++.|..|+||.......                           ......|+      
T Consensus       257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---------------------------~~~~~~h~------  303 (506)
T KOG0289|consen  257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---------------------------PTSSRPHE------  303 (506)
T ss_pred             ccCcceEEEEEEeccchhheeecCCcceEEeeccccccC---------------------------cccccccc------
Confidence            345999999999999999999999999999999875543                           23456677      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ++|+.+..  .++|.||++++.|++..+.|++++........                                
T Consensus       304 ------~~V~~ls~--h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~--------------------------------  343 (506)
T KOG0289|consen  304 ------EPVTGLSL--HPTGEYLLSASNDGTWAFSDISSGSQLTVVSD--------------------------------  343 (506)
T ss_pred             ------ccceeeee--ccCCcEEEEecCCceEEEEEccCCcEEEEEee--------------------------------
Confidence                  89999999  68999999999999999999999876654321                                


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                 ....-.+++++|+|||.+|.+| .|+.|+|||+..+. ..       ..+.+|
T Consensus       344 ---------------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~-------a~Fpgh  388 (506)
T KOG0289|consen  344 ---------------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NV-------AKFPGH  388 (506)
T ss_pred             ---------------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-cc-------ccCCCC
Confidence                                       1233468899999999999999 99999999999433 33       247899


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      .++|..++|+.+| .+|+++..|+.|++||+|..+..    +.+.. .           -...+.++.|.+.|.||+.++
T Consensus       389 t~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~----kt~~l-~-----------~~~~v~s~~fD~SGt~L~~~g  451 (506)
T KOG0289|consen  389 TGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNF----KTIQL-D-----------EKKEVNSLSFDQSGTYLGIAG  451 (506)
T ss_pred             CCceeEEEeccCc-eEEEEEecCCeEEEEEehhhccc----ceeec-c-----------ccccceeEEEcCCCCeEEeec
Confidence            9999999999999 99999999999999999986533    33332 0           013699999999999999874


Q ss_pred             c-CcEEEEeccC-CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          347 Y-MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       347 ~-~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                      . =.|++++-.+ .-..+..+..|.+..               +.+.|..+.+++++++.|..++++.+
T Consensus       452 ~~l~Vy~~~k~~k~W~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  452 SDLQVYICKKKTKSWTEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeEEEEEecccccceeeehhhhccccc---------------ceeeecccceEEeeccchhheEEeec
Confidence            2 4444444221 123444555555433               67899999999999999999988764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.8e-25  Score=208.18  Aligned_cols=289  Identities=15%  Similarity=0.175  Sum_probs=188.3

Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecc-ccccccccCCCCCceeccCCc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL-AEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  189 (457)
                      +|+++|.++.|  ++||+|||+|+.|+.|+||.+...+.........    .++-+.. .++. +.+.............
T Consensus       265 ah~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~----~~~~~~~~~~s~-~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  265 AHKGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDS----SCMYFEYNANSQ-IEPSTSSEEKISSRTS  337 (712)
T ss_pred             ccCCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhccccccc----chhhhhhhhccc-cCcccccccccccccc
Confidence            45599999999  8999999999999999999988744322111000    0000000 0000 0000000000000000


Q ss_pred             c----ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          190 W----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       190 ~----~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                      .    .....+.+-+.......+++..+ .+|.+.|..+.|+.++ +|+++ .|.+|+||++. ...++.++        
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-~~~CL~~F--------  406 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-RKECLKVF--------  406 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCC-CcceeeEE--------
Confidence            0    00001222222222344667777 8999999999999665 55666 99999999999 78888874        


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      .|.+.|+||+|+|-..++|++|+.||.||||++...+..     .+..             -..-|++++|.|||++.+.
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-----~W~D-------------l~~lITAvcy~PdGk~avI  468 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-----DWND-------------LRDLITAVCYSPDGKGAVI  468 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-----eehh-------------hhhhheeEEeccCCceEEE
Confidence            499999999999977799999999999999999886533     2221             1257999999999999999


Q ss_pred             Eec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721          345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGIT  422 (457)
Q Consensus       345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~~~~  422 (457)
                      |+. |.+++|+... .+....+..+...-...       .-..|+.+.|.|. ...|+..+.|..|+|+|.+.. ..+.+
T Consensus       469 Gt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~-------~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~K  539 (712)
T KOG0283|consen  469 GTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKK-------QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHK  539 (712)
T ss_pred             EEeccEEEEEEccC-CeEEEeeeEeeccCccc-------cCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhh
Confidence            997 9999999973 55555544332210000       0002378888874 345778889999999999766 56666


Q ss_pred             EecCCCcc--eeeeeccCCcceec
Q 012721          423 VEAGKNEN--RKPILQAAPRARRS  444 (457)
Q Consensus       423 ~~~~~~~v--~~~~~~p~~~~~~~  444 (457)
                      ++|+...-  ....|+.||....+
T Consensus       540 fKG~~n~~SQ~~Asfs~Dgk~IVs  563 (712)
T KOG0283|consen  540 FKGFRNTSSQISASFSSDGKHIVS  563 (712)
T ss_pred             hcccccCCcceeeeEccCCCEEEE
Confidence            77654332  34467777766655

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.4e-26  Score=212.70  Aligned_cols=246  Identities=18%  Similarity=0.308  Sum_probs=193.1

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           34 IVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        34 ~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      .+..|.|+. +.++|||++..|.|.+||+.....                        .+.+..|..|+           
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------------------------nk~l~~f~EH~-----------  133 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------------------------NKLLTVFNEHE-----------  133 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCcccc------------------------chhhhHhhhhc-----------
Confidence            445577765 468999999999999999976211                        11445678888           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                       ..++++.|+ +....+|++|+.||+|++||++..+.....                                       
T Consensus       134 -Rs~~~ldfh-~tep~iliSGSQDg~vK~~DlR~~~S~~t~---------------------------------------  172 (839)
T KOG0269|consen  134 -RSANKLDFH-STEPNILISGSQDGTVKCWDLRSKKSKSTF---------------------------------------  172 (839)
T ss_pred             -cceeeeeec-cCCccEEEecCCCceEEEEeeecccccccc---------------------------------------
Confidence             889999998 456679999999999999999876544321                                       


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                            .+....|..+.|+| .+..|+++ +.|.+.+||++...++..       .+.+|.++|
T Consensus       173 ----------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~-------k~~AH~GpV  223 (839)
T KOG0269|consen  173 ----------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK-------KLTAHNGPV  223 (839)
T ss_pred             ----------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH-------HhhcccCce
Confidence                                  34566789999998 67788888 999999999996666553       378999999


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE-EEEe---
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRD---  346 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~---  346 (457)
                      .|+.|+|++ .+||+|+.|+.|+|||+...+..  ...++..              ..+|.++.|-|...+. |+++   
T Consensus       224 ~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~--~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~  286 (839)
T KOG0269|consen  224 LCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAK--PKHTINT--------------IAPVGRVKWRPARSYHLATCSMVV  286 (839)
T ss_pred             EEEeecCCC-ceeeecCCCccEEEEeccCCCcc--ceeEEee--------------cceeeeeeeccCccchhhhhhccc
Confidence            999999998 99999999999999999875422  1122222              3679999999987664 4443   


Q ss_pred             cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCC
Q 012721          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      |-.|+|||++.+.-+..++..|...+               +.++|.. |...+.+++.||+|..-.++++
T Consensus       287 dtsV~VWDvrRPYIP~~t~~eH~~~v---------------t~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  287 DTSVHVWDVRRPYIPYATFLEHTDSV---------------TGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             cceEEEEeeccccccceeeeccCccc---------------cceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            48999999987788889999998876               6788854 5678889999999877766665

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6.2e-25  Score=199.29  Aligned_cols=266  Identities=18%  Similarity=0.232  Sum_probs=210.1

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      -...-+.|+ ..+.||+|.. ..|++|+..++...                         .+..+.  .           
T Consensus       178 fY~nlldWs-s~n~laValg-~~vylW~~~s~~v~-------------------------~l~~~~--~-----------  217 (484)
T KOG0305|consen  178 FYLNLLDWS-SANVLAVALG-QSVYLWSASSGSVT-------------------------ELCSFG--E-----------  217 (484)
T ss_pred             HhhhHhhcc-cCCeEEEEec-ceEEEEecCCCceE-------------------------EeEecC--C-----------
Confidence            344557788 4567788764 36999998887642                         122222  3           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                       ..|+++.|  +++|.+|++|..+|.|.|||..+.+....+.                                      
T Consensus       218 -~~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~--------------------------------------  256 (484)
T KOG0305|consen  218 -ELVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR--------------------------------------  256 (484)
T ss_pred             -CceEEEEE--CCCCCEEEEeecCCeEEEEehhhcccccccc--------------------------------------
Confidence             67999999  7999999999999999999988765443221                                      


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                                            ..|...|-+++|+  +..+.+| .|+.|..+|++.......+       +.+|...|.
T Consensus       257 ----------------------~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~-------~~~H~qeVC  305 (484)
T KOG0305|consen  257 ----------------------GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST-------LQGHRQEVC  305 (484)
T ss_pred             ----------------------CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh-------hhcccceee
Confidence                                  2388999999997  6778888 9999999999955444432       688999999


Q ss_pred             EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEe---c
Q 012721          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD---Y  347 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~---~  347 (457)
                      .++|++++ .++|+|+.|+.+.|||.....                 ....+..|...|.+++|+|- ..+||+|+   |
T Consensus       306 gLkws~d~-~~lASGgnDN~~~Iwd~~~~~-----------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D  367 (484)
T KOG0305|consen  306 GLKWSPDG-NQLASGGNDNVVFIWDGLSPE-----------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD  367 (484)
T ss_pred             eeEECCCC-CeeccCCCccceEeccCCCcc-----------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence            99999999 999999999999999984432                 22335678999999999995 56788764   5


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE--eCCCcEEEEecCCCCceeeEEec
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~--~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      +.|++||..+ ++.+..+......                .++.|++..+-|+++  -.++.|.||+..+. +....+.+
T Consensus       368 ~~i~fwn~~~-g~~i~~vdtgsQV----------------csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~g  429 (484)
T KOG0305|consen  368 RCIKFWNTNT-GARIDSVDTGSQV----------------CSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLG  429 (484)
T ss_pred             cEEEEEEcCC-CcEecccccCCce----------------eeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecC
Confidence            9999999985 7777776655443                589999987656553  34778999999997 78899999


Q ss_pred             CCCcceeeeeccCCcceeccc
Q 012721          426 GKNENRKPILQAAPRARRSSL  446 (457)
Q Consensus       426 ~~~~v~~~~~~p~~~~~~~~~  446 (457)
                      |...|-.++++||+....+|.
T Consensus       430 H~~RVl~la~SPdg~~i~t~a  450 (484)
T KOG0305|consen  430 HTSRVLYLALSPDGETIVTGA  450 (484)
T ss_pred             CcceeEEEEECCCCCEEEEec
Confidence            999999999999998888843

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.2e-24  Score=177.05  Aligned_cols=283  Identities=12%  Similarity=0.182  Sum_probs=197.7

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+-|.|+.|.+.|+.+|||+.|++|+|||.+....                       .+.+....+.|+       
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~-------   59 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHD-------   59 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecC-------
Confidence            35889999999999999999999999999999855442                       677888899999       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           +.|..|.|.+..-|+.+|+++.|+++.||.-.......                                     
T Consensus        60 -----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~-------------------------------------   97 (361)
T KOG2445|consen   60 -----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA-------------------------------------   97 (361)
T ss_pred             -----CcEEEEEecCccccceEEEEecCCceeeeeeccccccc-------------------------------------
Confidence                 99999999865559999999999999999854211110                                     


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecC------
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMK------  259 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~------  259 (457)
                            .-+-|.         .+..+......|+.+.|.|  -|-.|+++ .||.|+||+.-... .+..+.+.      
T Consensus        98 ------~~~~Wv---------~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-nLs~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   98 ------HGRRWV---------RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-NLSQWTLQHEIQNV  161 (361)
T ss_pred             ------ccceeE---------EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-ccccchhhhhhhhc
Confidence                  000111         1111256677899999998  57788888 99999999876322 11111111      


Q ss_pred             CCcccCCCCceEEEEEecCC--ccEEEEEccC-----CeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721          260 PSNMDDLTEVITSAEFHPIY--CNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~--~~~l~~~~~d-----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  332 (457)
                      +.....+.....|+.|+|..  ..+||.|+.+     +.+.||....+.      +.+.       ....+.+|..+|+.
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~------rKw~-------kva~L~d~~dpI~d  228 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG------RKWL-------KVAELPDHTDPIRD  228 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc------ceee-------eehhcCCCCCccee
Confidence            01123466778899999743  3588888866     578888766542      1111       11224578899999


Q ss_pred             EEEccC----CCeEEEEec-CcEEEEeccCCC-------------------CceeEeeeccccccccccccCCCCccccc
Q 012721          333 IKFAND----GQHLLSRDY-MNLKLWDIRMDS-------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKF  388 (457)
Q Consensus       333 ~~~s~~----g~~l~s~~~-~~i~~wd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  388 (457)
                      ++|.|+    -..||+++. | |+||.++...                   +.+..+..|.+.+               .
T Consensus       229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V---------------W  292 (361)
T KOG2445|consen  229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV---------------W  292 (361)
T ss_pred             eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce---------------E
Confidence            999996    246777764 7 9999986311                   1223344454433               7


Q ss_pred             eEEEcCCCcEEEEEeCCCcEEEEecC--CCCceeeEEecCCC
Q 012721          389 ECSVSGDGLHFATGSYSNLLRIFSHG--VGSAGGITVEAGKN  428 (457)
Q Consensus       389 ~~~~s~d~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~~~  428 (457)
                      .+.|+-.|..|++.+.||.|++|...  +..++...+++...
T Consensus       293 rv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~  334 (361)
T KOG2445|consen  293 RVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGS  334 (361)
T ss_pred             EEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCC
Confidence            99999999999999999999999854  44455555555443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1.3e-24  Score=207.65  Aligned_cols=270  Identities=16%  Similarity=0.266  Sum_probs=197.0

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ....|.+.|+|+.|+|||++||+|+.|+.|.||+......   ...+..    .|.  ......++.+..+.+|+     
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~---~~~fgs----~g~--~~~vE~wk~~~~l~~H~-----  129 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS---GTVFGS----TGG--AKNVESWKVVSILRGHD-----  129 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC---cccccc----ccc--ccccceeeEEEEEecCC-----
Confidence            3446999999999999999999999999999999874110   000000    000  01223678889999999     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ..|..++|  +|++.+|++++.|++|.+|+..+.+....+                                 
T Consensus       130 -------~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF~~~~vl---------------------------------  167 (942)
T KOG0973|consen  130 -------SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTFELLKVL---------------------------------  167 (942)
T ss_pred             -------Cccceecc--CCCccEEEEecccceEEEEccccceeeeee---------------------------------
Confidence                   77999999  789999999999999999999887444332                                 


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                  .+|...|..+.|.|-|++||+- +|++|++|++. .-...+.+. +|..-..
T Consensus       168 ----------------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~-dw~i~k~It-~pf~~~~  217 (942)
T KOG0973|consen  168 ----------------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS-DWGIEKSIT-KPFEESP  217 (942)
T ss_pred             ----------------------------ecccccccceEECCccCeeeeecCCceEEEEEcc-cceeeEeec-cchhhCC
Confidence                                        6899999999999999999997 99999999976 333333321 1111112


Q ss_pred             CCCceEEEEEecCCccEEEEEcc----CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC---
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---  338 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~----dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---  338 (457)
                      ....+..+.|+||| .+|++.-.    -.++.|.+-.+-+                 ....+.||..++.++.|+|.   
T Consensus       218 ~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk-----------------~~~~LvGH~~p~evvrFnP~lfe  279 (942)
T KOG0973|consen  218 LTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWK-----------------VDKDLVGHSAPVEVVRFNPKLFE  279 (942)
T ss_pred             CcceeeecccCCCc-CeecchhhccCCcceeEEEecCCce-----------------eeeeeecCCCceEEEEeChHHhc
Confidence            23457889999999 99988742    2345555543322                 12236789999999999982   


Q ss_pred             ---C---------C--eEEEEe-cCcEEEEeccCCCCceeEeee-ccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721          339 ---G---------Q--HLLSRD-YMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (457)
Q Consensus       339 ---g---------~--~l~s~~-~~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  402 (457)
                         .         .  .+|+|+ |++|.||.... .+++..... ....               |.+++|+|||..|+.+
T Consensus       280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~S---------------I~DmsWspdG~~Lfac  343 (942)
T KOG0973|consen  280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNKS---------------IVDMSWSPDGFSLFAC  343 (942)
T ss_pred             cccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcCc---------------eeeeeEcCCCCeEEEE
Confidence               1         1  345666 59999999864 566654432 1222               2699999999999999


Q ss_pred             eCCCcEEEEecCCC
Q 012721          403 SYSNLLRIFSHGVG  416 (457)
Q Consensus       403 ~~dg~i~iw~~~~~  416 (457)
                      |.||+|.+..+...
T Consensus       344 S~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  344 SLDGTVALIHFEEK  357 (942)
T ss_pred             ecCCeEEEEEcchH
Confidence            99999999998765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.1e-24  Score=201.13  Aligned_cols=276  Identities=14%  Similarity=0.189  Sum_probs=207.6

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|+...+.++|.|+|++|.+++.||.|++|+.......                     |+     ++.-+.       
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---------------------P~-----ti~~~g-------   56 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---------------------PE-----TIDISG-------   56 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---------------------Cc-----hhhccC-------
Confidence            358999999999999999999999999999997655221                     00     111133       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++.    ++++|++++.+++|.+|.+..++...++                                   
T Consensus        57 -----~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~iL-----------------------------------   92 (933)
T KOG1274|consen   57 -----ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTIL-----------------------------------   92 (933)
T ss_pred             -----ceeEEEee----cccceEEeeccceEEEeeCCCCCcccee-----------------------------------
Confidence                 56777765    4559999999999999999887644222                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                ...+-++.+++++-+|++++.| +|-.|++-++....+ ...       +.+|.
T Consensus        93 --------------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-~~~-------lrgh~  138 (933)
T KOG1274|consen   93 --------------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-EKV-------LRGHD  138 (933)
T ss_pred             --------------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-hee-------ecccC
Confidence                                      2334588999999999999999 999999999984333 322       68999


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEe
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~  346 (457)
                      ++|.++.|+|.+ ++||+.+-||.|++||+..+.+.    .++..-.....     ..-...+..++|+|+ |.+++.+.
T Consensus       139 apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~----~tl~~v~k~n~-----~~~s~i~~~~aW~Pk~g~la~~~~  208 (933)
T KOG1274|consen  139 APVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILS----KTLTGVDKDNE-----FILSRICTRLAWHPKGGTLAVPPV  208 (933)
T ss_pred             CceeeeeEcCCC-CEEEEEecCceEEEEEcccchhh----hhcccCCcccc-----ccccceeeeeeecCCCCeEEeecc
Confidence            999999999999 99999999999999999987654    22222000000     011356788999999 55556677


Q ss_pred             cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      ++.|++|+... ......+........ +            ..+.|+|.|+|||+++-||.|.|||+++-+.     ...
T Consensus       209 d~~Vkvy~r~~-we~~f~Lr~~~~ss~-~------------~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~  269 (933)
T KOG1274|consen  209 DNTVKVYSRKG-WELQFKLRDKLSSSK-F------------SDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEF  269 (933)
T ss_pred             CCeEEEEccCC-ceeheeecccccccc-e------------EEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccc
Confidence            89999999874 666666664332211 1            5799999999999999999999999997321     334


Q ss_pred             CCcceeeeeccCCcceec
Q 012721          427 KNENRKPILQAAPRARRS  444 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~  444 (457)
                      ...|.+++|.|+.+....
T Consensus       270 ~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  270 KRAVCCEAWKPNANAITL  287 (933)
T ss_pred             cceeEEEecCCCCCeeEE
Confidence            567899999999876543

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=6.4e-24  Score=200.72  Aligned_cols=211  Identities=11%  Similarity=0.120  Sum_probs=150.8

Q ss_pred             cccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..|.+.|.+++|+|+ +++||+|+.||+|+||++.++...                   .......+..+.+|.      
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~-------------------~~~i~~p~~~L~gH~------  125 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES-------------------VKEIKDPQCILKGHK------  125 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc-------------------ccccccceEEeecCC------
Confidence            459999999999996 789999999999999999754320                   000112345678888      


Q ss_pred             ccccccCcEEEEEEEecCCCCE-EEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          108 KSLEIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~-l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                            ..|.+++|  +|++.. +++++.|++|++||+.+++....+                                 
T Consensus       126 ------~~V~sVaf--~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i---------------------------------  164 (568)
T PTZ00420        126 ------KKISIIDW--NPMNYYIMCSSGFDSFVNIWDIENEKRAFQI---------------------------------  164 (568)
T ss_pred             ------CcEEEEEE--CCCCCeEEEEEeCCCeEEEEECCCCcEEEEE---------------------------------
Confidence                  88999999  566655 578999999999999887643221                                 


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                   .|...|.+++|+|+|.+|+++ .|+.|+|||++ .+.....       +.+
T Consensus       165 -----------------------------~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R-sg~~i~t-------l~g  207 (568)
T PTZ00420        165 -----------------------------NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR-KQEIASS-------FHI  207 (568)
T ss_pred             -----------------------------ecCCcEEEEEECCCCCEEEEEecCCEEEEEECC-CCcEEEE-------Eec
Confidence                                         244579999999999999998 99999999999 4555543       567


Q ss_pred             CCCceEE-----EEEecCCccEEEEEccCC----eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721          266 LTEVITS-----AEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (457)
Q Consensus       266 ~~~~i~~-----v~~~p~~~~~l~~~~~dg----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  336 (457)
                      |.+.+.+     ..|++++ .+|++++.|+    .|+|||++.....   +..+..           ..+.+.+......
T Consensus       208 H~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~p---l~~~~l-----------d~~~~~L~p~~D~  272 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSA---LVTMSI-----------DNASAPLIPHYDE  272 (568)
T ss_pred             ccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCc---eEEEEe-----------cCCccceEEeeeC
Confidence            7765433     2345787 7888877664    7999999963211   122221           1122333333345


Q ss_pred             cCCCeEEEEe-cCcEEEEeccC
Q 012721          337 NDGQHLLSRD-YMNLKLWDIRM  357 (457)
Q Consensus       337 ~~g~~l~s~~-~~~i~~wd~~~  357 (457)
                      ++|.++++|. |+.|++|++..
T Consensus       273 ~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        273 STGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             CCCCEEEEEECCCeEEEEEccC
Confidence            5688888885 59999999974

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.2e-24  Score=188.94  Aligned_cols=249  Identities=15%  Similarity=0.177  Sum_probs=189.4

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|...|.+++.|+||+|||+|+.|..|.||+.++.+.                           +..|.+|.        
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh---------------------------v~~~~ghr--------  244 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH---------------------------VKVFKGHR--------  244 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccch---------------------------hhcccccc--------
Confidence            6999999999999999999999999999999998874                           35689999        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          +.|.+++|  -.....+++++.|++|++|+++.......                                     
T Consensus       245 ----~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~~~s~vet-------------------------------------  281 (479)
T KOG0299|consen  245 ----GAVSSLAF--RKGTSELYSASADRSVKVWSIDQLSYVET-------------------------------------  281 (479)
T ss_pred             ----cceeeeee--ecCccceeeeecCCceEEEehhHhHHHHH-------------------------------------
Confidence                89999999  45556799999999999999987543322                                     


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                              +.+|...|..+.....++.+.+| .|+++++|++....+.+         +.++.+
T Consensus       282 ------------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------frg~~~  328 (479)
T KOG0299|consen  282 ------------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------FRGGEG  328 (479)
T ss_pred             ------------------------HhCCccceeeechhcccceEEeccccceeEEEeccccceee---------eeCCCC
Confidence                                    27999999999998888888888 99999999996333332         567888


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccc-cccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      .+-|++|-.+  ..+++|+.+|.|.+|++.+.+.+    .+... |...+..  .-..+..+|++++..|...++++|+.
T Consensus       329 sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkpl----f~~~~AHgv~~~~--~~~~~~~Witsla~i~~sdL~asGS~  400 (479)
T KOG0299|consen  329 SIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPL----FTSRLAHGVIPEL--DPVNGNFWITSLAVIPGSDLLASGSW  400 (479)
T ss_pred             CeeeEEEecc--cceeeccCCceEEEeeecccCce----eEeeccccccCCc--cccccccceeeeEecccCceEEecCC
Confidence            9999999877  57999999999999999887644    11111 1111111  01223358999999999999999985


Q ss_pred             -CcEEEEeccCCCC---ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE-eCCCcEEEEec
Q 012721          348 -MNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSH  413 (457)
Q Consensus       348 -~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~dg~i~iw~~  413 (457)
                       |.|++|-+..+.+   ++..+. -.+.+               .+++|+++|++|++| +....+--|-.
T Consensus       401 ~G~vrLW~i~~g~r~i~~l~~ls-~~GfV---------------Nsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  401 SGCVRLWKIEDGLRAINLLYSLS-LVGFV---------------NSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             CCceEEEEecCCccccceeeecc-cccEE---------------EEEEEccCCCEEEEecccccccceeeE
Confidence             9999999976433   333333 22222               689999999966655 44445544543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=5.1e-25  Score=191.07  Aligned_cols=262  Identities=16%  Similarity=0.214  Sum_probs=195.1

Q ss_pred             cccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       103 ~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                      .|+....+.|++.|+.+++.| .+..++++.+..+.|.|||.....-.......                          
T Consensus       114 ~v~i~~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~--------------------------  166 (422)
T KOG0264|consen  114 KVEISQKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGE--------------------------  166 (422)
T ss_pred             ceEEEEeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCccccccc--------------------------
Confidence            334444567779999999986 56678888999999999998764322111000                          


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                                              ..+-.. +.+|...-+.++|++. .-.|+++ .|+.|++||+......-.++. +.
T Consensus       167 ------------------------~~Pdl~-L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~-p~  220 (422)
T KOG0264|consen  167 ------------------------CRPDLR-LKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVD-PK  220 (422)
T ss_pred             ------------------------CCCceE-EEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcccc-ce
Confidence                                    011111 2688888888999884 3456666 999999999985443211111 11


Q ss_pred             CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                      ..+.+|...|..++|++....+|++++.|+.+.|||+|++..     +.          .....+|.+.|++++|+|-+.
T Consensus       221 ~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~-----~~----------~~~~~ah~~~vn~~~fnp~~~  285 (422)
T KOG0264|consen  221 TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS-----KP----------SHSVKAHSAEVNCVAFNPFNE  285 (422)
T ss_pred             EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC-----CC----------cccccccCCceeEEEeCCCCC
Confidence            247899999999999998878999999999999999997311     11          112356889999999999654


Q ss_pred             -eEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCC
Q 012721          341 -HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       341 -~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                       .||+|+ |++|++||+|...+++..+.+|...+               +++.|||+ ...||+++.|+++.|||+..-.
T Consensus       286 ~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev---------------~~V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  286 FILATGSADKTVALWDLRNLNKPLHTFEGHEDEV---------------FQVEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             ceEEeccCCCcEEEeechhcccCceeccCCCcce---------------EEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence             556776 69999999998788999999999876               79999997 5688999999999999997532


Q ss_pred             c-------------eeeEEecCCCcceeeeeccCCcceecccc
Q 012721          418 A-------------GGITVEAGKNENRKPILQAAPRARRSSLS  447 (457)
Q Consensus       418 ~-------------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~  447 (457)
                      .             .+++-.||.+.|....|+|.-|=...+++
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence            2             23667899999999999999887665444

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.8e-24  Score=177.93  Aligned_cols=293  Identities=13%  Similarity=0.155  Sum_probs=203.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccC
Q 012721           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (457)
Q Consensus        35 V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (457)
                      -.|+.|++.|.+||+|+.||.|.|||+.+...                           -..+.+|.            .
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i---------------------------ar~lsaH~------------~   66 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI---------------------------ARMLSAHV------------R   66 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch---------------------------hhhhhccc------------c
Confidence            78999999999999999999999999987653                           35678898            8


Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      +|.+++|  |++|..|+++|.|..|++||+..|.+...+.  +...|....|++.+.+.........             
T Consensus        67 pi~sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~-------------  129 (405)
T KOG1273|consen   67 PITSLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEE-------------  129 (405)
T ss_pred             ceeEEEe--cCCCCEeeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecC-------------
Confidence            8999999  8999999999999999999999998655544  4556777888877654332221110             


Q ss_pred             ceEEEeccCccccccceeeccCC-CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          195 ATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                      ...+.+... ....++..-..+. .....+..|.+.|+++++| ..|.+.++|.. ..+++..+...      ....|..
T Consensus       130 sp~vi~~s~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~-t~e~vas~rit------s~~~IK~  201 (405)
T KOG1273|consen  130 SPVVIDFSD-PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE-TLECVASFRIT------SVQAIKQ  201 (405)
T ss_pred             CcEEEEecC-CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc-hheeeeeeeec------hheeeeE
Confidence            111111111 0001110000000 1112234688999999999 99999999998 45565543211      1256888


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec--cccceEEEEEccCCCeEEEEec--C
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE--IIASISDIKFANDGQHLLSRDY--M  348 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~s~~~--~  348 (457)
                      +.++-.| ..|+.-+.|..||.|+++.--.....        ..+.....+..  -...-.+++|+.+|.|+++++.  .
T Consensus       202 I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~--------~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aH  272 (405)
T KOG1273|consen  202 IIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRD--------GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAH  272 (405)
T ss_pred             EEEeccC-cEEEEecCCceEEEEehhhhcccCcc--------CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccce
Confidence            9999999 99999999999999998742110000        00000000000  0123467899999999998864  8


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      .+++|.-.+ +.+++.+.+..+..-              ..+.|+|-...|++- ..|.++||.....
T Consensus       273 aLYIWE~~~-GsLVKILhG~kgE~l--------------~DV~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  273 ALYIWEKSI-GSLVKILHGTKGEEL--------------LDVNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             eEEEEecCC-cceeeeecCCchhhe--------------eecccccceeeeeec-cCCceEEEEeecc
Confidence            999999976 899999988775421              478899999888887 6799999997654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.1e-24  Score=184.53  Aligned_cols=291  Identities=18%  Similarity=0.202  Sum_probs=199.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      .+.|++|.|+|...+|++|+.||+++||.+++....                         .+..+.-..          
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-------------------------~lqS~~l~~----------  257 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-------------------------KLQSIHLEK----------  257 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-------------------------hheeeeecc----------
Confidence            579999999999999999999999999999876542                         223333223          


Q ss_pred             ccCcEEEEEEEecCCCC-EEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                        -+|.+..|  .++|. .+++++....+..||+.+.+...+.......+-..-                ...++.++.|
T Consensus       258 --fPi~~a~f--~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e----------------~FeVShd~~f  317 (514)
T KOG2055|consen  258 --FPIQKAEF--APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSME----------------RFEVSHDSNF  317 (514)
T ss_pred             --Cccceeee--cCCCceEEEecccceEEEEeeccccccccccCCCCcccchhh----------------eeEecCCCCe
Confidence              57999999  57888 888999999999999998876655432221100000                0111122221


Q ss_pred             ----ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          191 ----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       191 ----~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                          ...+.|.+....+   .+.+..+  .-.+.|..++|+.+++.|+++ .+|.|++||++ ...++..+.-     . 
T Consensus       318 ia~~G~~G~I~lLhakT---~eli~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-~~~~~~rf~D-----~-  385 (514)
T KOG2055|consen  318 IAIAGNNGHIHLLHAKT---KELITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-QNSCLHRFVD-----D-  385 (514)
T ss_pred             EEEcccCceEEeehhhh---hhhhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC-CcceEEEEee-----c-
Confidence                0122444443322   2222222  234678899999999998887 99999999999 4566655421     1 


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ..-.-++++.++++ .+||+|+..|.|.|||..+....           ..|.+...+..-...|++++|+|++++||.+
T Consensus       386 G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s-----------~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia  453 (514)
T KOG2055|consen  386 GSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAS-----------TNPKPIKTVDNLTTAITSLQFNHDAQILAIA  453 (514)
T ss_pred             CccceeeeeecCCC-ceEEeccCcceEEEeccchhhcc-----------CCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence            11234677888999 99999999999999997763211           1233333444556789999999999999977


Q ss_pred             ec---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          346 DY---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       346 ~~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      +.   ..+++-.+.+ ......+......+            .-|++++|||.+.+||.|.++|++.+|.+.
T Consensus       454 S~~~knalrLVHvPS-~TVFsNfP~~n~~v------------g~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  454 SRVKKNALRLVHVPS-CTVFSNFPTSNTKV------------GHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhccccceEEEeccc-eeeeccCCCCCCcc------------cceEEEEecCCCceEEeecCCCceeeEeec
Confidence            63   8899988853 33334444333322            234899999999999999999999999874

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=6.3e-25  Score=181.37  Aligned_cols=255  Identities=20%  Similarity=0.232  Sum_probs=195.0

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ...|.+.|+++.|+|...+|++|+.|++|++||...-...                           +.++-.+      
T Consensus       168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK---------------------------rA~K~~q------  214 (430)
T KOG0640|consen  168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK---------------------------RAFKVFQ------  214 (430)
T ss_pred             hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHH---------------------------HHHHHhh------
Confidence            4459999999999999999999999999999998644321                           1111111      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                          -..+|.++.|  .|.|.+|+.|..-.++++||+++.++.....  .                              
T Consensus       215 ----d~~~vrsiSf--HPsGefllvgTdHp~~rlYdv~T~Qcfvsan--P------------------------------  256 (430)
T KOG0640|consen  215 ----DTEPVRSISF--HPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--P------------------------------  256 (430)
T ss_pred             ----ccceeeeEee--cCCCceEEEecCCCceeEEeccceeEeeecC--c------------------------------
Confidence                1157999999  5789999999999999999999876543211  0                              


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                -..|.+.|+++.+++.+++.+++ .||.|++||-- .++++.++      -..|
T Consensus       257 --------------------------d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-S~rCv~t~------~~AH  303 (430)
T KOG0640|consen  257 --------------------------DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-SNRCVRTI------GNAH  303 (430)
T ss_pred             --------------------------ccccccceeEEEecCCccEEEEeccCCcEEeeccc-cHHHHHHH------Hhhc
Confidence                                      05799999999999999999999 99999999977 67787764      2345


Q ss_pred             C-CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          267 T-EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       267 ~-~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      . ..|.+..|..+| +++++.+.|..+++|.+.++...    ..+.+ . +.      .+-..--+...|+....|++.-
T Consensus       304 ~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l----~~YtG-A-g~------tgrq~~rtqAvFNhtEdyVl~p  370 (430)
T KOG0640|consen  304 GGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRML----KEYTG-A-GT------TGRQKHRTQAVFNHTEDYVLFP  370 (430)
T ss_pred             CCceeeeEEEccCC-eEEeecCCcceeeeeeecCCceE----EEEec-C-Cc------ccchhhhhhhhhcCccceEEcc
Confidence            4 568889999999 99999999999999999998654    33333 0 00      0001123445688888888877


Q ss_pred             ec--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          346 DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       346 ~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      ++  +.+.-||.++..+.-.--.+|.+.+               ..+.-||.+.-+++++.|.++++|--+
T Consensus       371 DEas~slcsWdaRtadr~~l~slgHn~a~---------------R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  371 DEASNSLCSWDARTADRVALLSLGHNGAV---------------RWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             ccccCceeeccccchhhhhhcccCCCCCc---------------eEEEeCCCCCceeeecccceeeeeeec
Confidence            65  8899999987444433344677765               578889999999999999999999754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=2.9e-23  Score=192.65  Aligned_cols=336  Identities=14%  Similarity=0.161  Sum_probs=219.2

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      +.+.|+++.=+|-=..+|.|..+|+|.|+++..++.                           +.+|+...         
T Consensus       201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki---------------------------l~sFk~d~---------  244 (910)
T KOG1539|consen  201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI---------------------------LMSFKQDW---------  244 (910)
T ss_pred             cccceeEeccCCcceEEEEeccCceEEEEEcccCcE---------------------------EEEEEccc---------
Confidence            678999999999889999999999999999998774                           45555544         


Q ss_pred             cccCcEEEEEEEecCCCCE-EEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          111 EIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~-l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                         +.|++++|  ..||.. +++++..|.+.+||++..+.......-....+....|.+....++....           
T Consensus       245 ---g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~-----------  308 (910)
T KOG1539|consen  245 ---GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA-----------  308 (910)
T ss_pred             ---cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC-----------
Confidence               88999999  677765 5556677999999999887766554333333444444433333333222           


Q ss_pred             cccccceEEEeccCccc-cccceeeccCCCCCeeEEEeC-CCCCEEEEe-CCCeEEEEEcCC------------------
Q 012721          190 WTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEI------------------  248 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~------------------  248 (457)
                         +..+++|-.+...- .+.++.- .||..+-.|+.|. .+|..+.++ .|++++.+++..                  
T Consensus       309 ---DnSlk~~vfD~~dg~pR~LR~R-~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk  384 (910)
T KOG1539|consen  309 ---DNSLKVWVFDSGDGVPRLLRSR-GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK  384 (910)
T ss_pred             ---CCceeEEEeeCCCCcchheeec-cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence               23344443332111 1222222 5666666666665 455555555 555555444321                  


Q ss_pred             ----------------------------------------------CcceeeeeecCCCcccCCCCceEEEEEecCCccE
Q 012721          249 ----------------------------------------------SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  282 (457)
Q Consensus       249 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~  282 (457)
                                                                    ... ..-+.+++..++.-...+++++.++.| ++
T Consensus       385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-~G~~~L~~~~~~~~~~~~~av~vs~CG-NF  462 (910)
T KOG1539|consen  385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-SGRHVLDPKRFKKDDINATAVCVSFCG-NF  462 (910)
T ss_pred             ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-cccEEecCccccccCcceEEEEEeccC-ce
Confidence                                                          111 000111112233344678999999999 99


Q ss_pred             EEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCc
Q 012721          283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP  361 (457)
Q Consensus       283 l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~  361 (457)
                      .+.|+..|.|.+|++++|-..    ..+..          -..|..+|+.++...-++.+++++ +|.+++||... ..+
T Consensus       463 ~~IG~S~G~Id~fNmQSGi~r----~sf~~----------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l  527 (910)
T KOG1539|consen  463 VFIGYSKGTIDRFNMQSGIHR----KSFGD----------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVL  527 (910)
T ss_pred             EEEeccCCeEEEEEcccCeee----ccccc----------CccccCceeEEEecCCCceEEEccCcceEEEEecCC-cce
Confidence            999999999999999997433    22211          146789999999999899899876 49999999864 332


Q ss_pred             eeEeeeccccc-----------cccc-----------------ccc-CCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          362 VATFKIHEHLR-----------PKLC-----------------DLY-NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       362 ~~~~~~~~~~~-----------~~~~-----------------~~~-~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      +..+.......           ...+                 .+- ..+.   +++++|||||++|++++.|++|++||
T Consensus       528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr---itd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR---ITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc---eeeeEeCCCCcEEEEeecCCcEEEEe
Confidence            22222110000           0000                 000 1122   27999999999999999999999999


Q ss_pred             cCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          413 HGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       413 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +.++ ..+- .-.-..++..+.|+|+|.-.+.
T Consensus       605 lpt~-~lID-~~~vd~~~~sls~SPngD~LAT  634 (910)
T KOG1539|consen  605 LPTG-TLID-GLLVDSPCTSLSFSPNGDFLAT  634 (910)
T ss_pred             ccCc-ceee-eEecCCcceeeEECCCCCEEEE
Confidence            9999 3333 3345789999999999987776

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.5e-25  Score=180.90  Aligned_cols=273  Identities=16%  Similarity=0.231  Sum_probs=205.0

Q ss_pred             CCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecC----CccCCCccc-chhhhhhcc-------cccccC-CCccc
Q 012721           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG----GKNTPNQHI-SRSELEKQM-------DFTSTS-HPEYR   92 (457)
Q Consensus        26 ~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~----~~~~~~~~~-~~~~~~~~~-------~~~~~~-~~~~~   92 (457)
                      ....+|.+.|+|++|++.+.++++++.|++-.||...-    .+..++.++ ...+.+..+       ...++- +..-.
T Consensus       184 ~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv  263 (481)
T KOG0300|consen  184 ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV  263 (481)
T ss_pred             eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence            34556999999999999999999999999999998321    111111111 111111111       111111 11234


Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (457)
                      ++..|.+|.            +.|.+..|+  ..|+.+++++.|.+..+||+++++.+..+                   
T Consensus       264 Pl~~ltgH~------------~vV~a~dWL--~gg~Q~vTaSWDRTAnlwDVEtge~v~~L-------------------  310 (481)
T KOG0300|consen  264 PLMRLTGHR------------AVVSACDWL--AGGQQMVTASWDRTANLWDVETGEVVNIL-------------------  310 (481)
T ss_pred             eeeeeeccc------------cceEehhhh--cCcceeeeeeccccceeeeeccCceeccc-------------------
Confidence            667788888            889999995  67889999999999999999999876542                   


Q ss_pred             ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc
Q 012721          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  251 (457)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~  251 (457)
                                                                .+|....+.++-+|..++++++ .|-+.++||++..-+
T Consensus       311 ------------------------------------------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~  348 (481)
T KOG0300|consen  311 ------------------------------------------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ  348 (481)
T ss_pred             ------------------------------------------cCcchhccccccCCcceEEEEeccCceeEeccchhhcc
Confidence                                                      6899999999999999999999 999999999994444


Q ss_pred             eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  331 (457)
                      .+.+       +++|.+.|+++.|..+.  .+++|+.|.+|++||+++.....   .++..              .++++
T Consensus       349 sV~V-------FQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRspl---ATIRt--------------dS~~N  402 (481)
T KOG0300|consen  349 SVAV-------FQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPL---ATIRT--------------DSPAN  402 (481)
T ss_pred             eeee-------ecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcc---eeeec--------------CCccc
Confidence            4444       79999999999999874  68999999999999999875332   22222              36789


Q ss_pred             EEEEccCCCeEEEEec-CcEEEEeccCCCCceeE-----eeeccccccccccccCCCCccccceEEEcCCC--cEEEEEe
Q 012721          332 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-----FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LHFATGS  403 (457)
Q Consensus       332 ~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~s~~  403 (457)
                      .++.+..+..|+.--| ..|++||+.  +..+..     -++|...+               .+++|..+.  .-|++++
T Consensus       403 Rvavs~g~~iIAiPhDNRqvRlfDln--G~RlaRlPrtsRqgHrRMV---------------~c~AW~eehp~cnLftcG  465 (481)
T KOG0300|consen  403 RVAVSKGHPIIAIPHDNRQVRLFDLN--GNRLARLPRTSRQGHRRMV---------------TCCAWLEEHPACNLFTCG  465 (481)
T ss_pred             eeEeecCCceEEeccCCceEEEEecC--CCccccCCcccccccceee---------------eeeeccccCccccccccc
Confidence            9999988889988776 999999996  443333     34565544               688997653  4688999


Q ss_pred             CCCcEEEEecCCC
Q 012721          404 YSNLLRIFSHGVG  416 (457)
Q Consensus       404 ~dg~i~iw~~~~~  416 (457)
                      .|..+.-|++...
T Consensus       466 FDR~v~gW~in~p  478 (481)
T KOG0300|consen  466 FDRMVAGWKINTP  478 (481)
T ss_pred             ccceeeeeEeccc
Confidence            9999999998765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.5e-25  Score=197.09  Aligned_cols=233  Identities=18%  Similarity=0.228  Sum_probs=186.6

Q ss_pred             CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCc
Q 012721          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (457)
Q Consensus       125 ~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  204 (457)
                      +++++|++|+.||.|++|++........                                                    
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s----------------------------------------------------   62 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPS----------------------------------------------------   62 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcc----------------------------------------------------
Confidence            6777899999999999999875432110                                                    


Q ss_pred             cccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc-ceeeeeecCCCcccCCCCceEEEEE-ecCCcc
Q 012721          205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEF-HPIYCN  281 (457)
Q Consensus       205 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~-~p~~~~  281 (457)
                        ..++..+ +.|...|+.+....+++.|+++ .|-+|++|+..... -+..       .+..|.+.|.|+++ .++. .
T Consensus        63 --~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s-------tir~H~DYVkcla~~ak~~-~  131 (735)
T KOG0308|consen   63 --TPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS-------TIRTHKDYVKCLAYIAKNN-E  131 (735)
T ss_pred             --cchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh-------hhhcccchheeeeecccCc-e
Confidence              0112222 6899999999999999999999 99999999998443 2332       36789999999999 6776 8


Q ss_pred             EEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee-ccccceEEEEEccCCCeEEEEec-CcEEEEeccCCC
Q 012721          282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS  359 (457)
Q Consensus       282 ~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~  359 (457)
                      ++|+|+.|+.|.+||+.++...  ....+.     ......+. ++..+|++++.++.|..|++|+- +.+++||.++ .
T Consensus       132 lvaSgGLD~~IflWDin~~~~~--l~~s~n-----~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~  203 (735)
T KOG0308|consen  132 LVASGGLDRKIFLWDINTGTAT--LVASFN-----NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-C  203 (735)
T ss_pred             eEEecCCCccEEEEEccCcchh--hhhhcc-----ccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-c
Confidence            9999999999999999987320  001111     11111222 77899999999999988888864 9999999997 7


Q ss_pred             CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCC
Q 012721          360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  439 (457)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~  439 (457)
                      +.+..+++|...+               ..+..++||..+++++.||+|++||+.-+ +++.++..|...|+++..+|+.
T Consensus       204 ~kimkLrGHTdNV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf  267 (735)
T KOG0308|consen  204 KKIMKLRGHTDNV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSF  267 (735)
T ss_pred             cceeeeeccccce---------------EEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCc
Confidence            7778888999876               57889999999999999999999999988 8999999999999999999887


Q ss_pred             cceec
Q 012721          440 RARRS  444 (457)
Q Consensus       440 ~~~~~  444 (457)
                      ....+
T Consensus       268 ~~vYs  272 (735)
T KOG0308|consen  268 THVYS  272 (735)
T ss_pred             ceEEe
Confidence            77776

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.3e-25  Score=204.98  Aligned_cols=229  Identities=16%  Similarity=0.245  Sum_probs=192.7

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|.++..  -..+..+++|+.|..+.+|.+..-....                                          
T Consensus        29 aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~kp~~i~------------------------------------------   64 (825)
T KOG0267|consen   29 AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGKPNAIT------------------------------------------   64 (825)
T ss_pred             hhhceeee--eccceeeccCCCceeeccccccCCchhh------------------------------------------
Confidence            66777776  3567789999999999999875432111                                          


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                                        . +.+|..+|.++.|+++..+|++| .+|+|++||++ ....++       ++.+|...+.+
T Consensus        65 ------------------S-~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vr-------tLtgh~~~~~s  117 (825)
T KOG0267|consen   65 ------------------S-LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVR-------TLTGHLLNITS  117 (825)
T ss_pred             ------------------e-eeccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhh-------hhhccccCcce
Confidence                              1 16899999999999999999999 99999999999 555554       37899999999


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEE
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  351 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~  351 (457)
                      +.|+|-+ .+.+.|+.|+.+++||++...+.    ..             +.+|...+..+.|+|+|+++++|++ ..++
T Consensus       118 v~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~----~~-------------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  118 VDFHPYG-EFFASGSTDTDLKIWDIRKKGCS----HT-------------YKSHTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             eeeccce-EEeccccccccceehhhhccCce----ee-------------ecCCcceeEEEeecCCCceeeccCCcceee
Confidence            9999999 99999999999999999965432    22             2446778999999999999999876 9999


Q ss_pred             EEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcce
Q 012721          352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  431 (457)
Q Consensus       352 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~  431 (457)
                      |||+.. ++.+..|..|+..+               ..+.|+|..-++++|+.|+++++||+++- ..+.........|.
T Consensus       180 i~d~~a-gk~~~ef~~~e~~v---------------~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~  242 (825)
T KOG0267|consen  180 IWDLTA-GKLSKEFKSHEGKV---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVR  242 (825)
T ss_pred             eecccc-cccccccccccccc---------------cccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCce
Confidence            999975 89999999998876               57889999999999999999999999977 45555666788999


Q ss_pred             eeeeccCCcceeccccc
Q 012721          432 KPILQAAPRARRSSLSN  448 (457)
Q Consensus       432 ~~~~~p~~~~~~~~~~~  448 (457)
                      +.+|+|++....+|..-
T Consensus       243 ~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  243 SLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             eeeecCCceeeecCchh
Confidence            99999999998887543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.7e-24  Score=195.29  Aligned_cols=276  Identities=16%  Similarity=0.246  Sum_probs=205.0

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      .....+|+..++-..|+.++.. .++||........                       ..+...+++..+-|       
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~-----------------------~~~~~~~k~kqn~~-------   87 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFS-----------------------EKCNHRFKTKQNKF-------   87 (839)
T ss_pred             ccccceEeecCCcceeEEeccc-ceeeEeeCcccCC-----------------------cceeeeccccccee-------
Confidence            4577888899998888888865 6889887654421                       11112222222111       


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        -.+..|.|. .-+.++|++++..|.|.+||+...-.                                          
T Consensus        88 --~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~r------------------------------------------  122 (839)
T KOG0269|consen   88 --YSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIR------------------------------------------  122 (839)
T ss_pred             --eehhhcccc-cchhhhheeecCCCcEEEEecCcccc------------------------------------------
Confidence              346778996 56678999999999999999976210                                          


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                     .+.+..+ ..|...++++.|++ ...+|++| .||.|++||++ ......+       +.+..+.
T Consensus       123 ---------------nk~l~~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR-~~~S~~t-------~~~nSES  178 (839)
T KOG0269|consen  123 ---------------NKLLTVF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR-SKKSKST-------FRSNSES  178 (839)
T ss_pred             ---------------chhhhHh-hhhccceeeeeeccCCccEEEecCCCceEEEEeee-ccccccc-------ccccchh
Confidence                           0111122 78999999999988 55677888 99999999999 5555544       4567789


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~  348 (457)
                      |..|.|+|..+..|+++.+.|.+++||+|....+      +.          .+.+|.++|.++.|+|++.+||+|+ |+
T Consensus       179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------~~----------k~~AH~GpV~c~nwhPnr~~lATGGRDK  242 (839)
T KOG0269|consen  179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------EK----------KLTAHNGPVLCLNWHPNREWLATGGRDK  242 (839)
T ss_pred             hhceeeccCCCceEEEecCCceEEEeeccCchhH------HH----------HhhcccCceEEEeecCCCceeeecCCCc
Confidence            9999999987789999999999999999986432      11          2467899999999999999999987 59


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcE-EEEEe--CCCcEEEEecCCCCceeeEEec
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGS--YSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~s~~--~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      .|+|||+.. .+.-.....+...              +|..+.|-|+..+ ||+++  .|-.|+|||++...-+..++..
T Consensus       243 ~vkiWd~t~-~~~~~~~tInTia--------------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e  307 (839)
T KOG0269|consen  243 MVKIWDMTD-SRAKPKHTINTIA--------------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE  307 (839)
T ss_pred             cEEEEeccC-CCccceeEEeecc--------------eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence            999999964 3332222222221              2368999998765 45443  4889999999988778899999


Q ss_pred             CCCcceeeeeccC
Q 012721          426 GKNENRKPILQAA  438 (457)
Q Consensus       426 ~~~~v~~~~~~p~  438 (457)
                      |...++.++|...
T Consensus       308 H~~~vt~i~W~~~  320 (839)
T KOG0269|consen  308 HTDSVTGIAWDSG  320 (839)
T ss_pred             cCccccceeccCC
Confidence            9999999999763

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=2e-23  Score=181.22  Aligned_cols=290  Identities=17%  Similarity=0.215  Sum_probs=207.3

Q ss_pred             cCCceEEEEECCCC--CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        31 h~~~V~~~~~s~~~--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      +.+.|++++|+|..  +++|+|+..|.|-+||+.+.+.                       .+.-+..+..|.       
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------------d~d~v~~f~~hs-------  234 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------------DKDGVYLFTPHS-------  234 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------------ccCceEEeccCC-------
Confidence            78999999999955  6899999999999999975443                       344556778888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ++|.++.|.| .+...+++.|.||+|++-|++++....+...                                 
T Consensus       235 -----~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~---------------------------------  275 (498)
T KOG4328|consen  235 -----GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLSL---------------------------------  275 (498)
T ss_pred             -----ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhhc---------------------------------
Confidence                 8999999976 4456899999999999999988654333211                                 


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                ......+..+.|+.+...++.+ .=|...+||++..+.....       +.-|.
T Consensus       276 --------------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~lh~  322 (498)
T KOG4328|consen  276 --------------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRLHK  322 (498)
T ss_pred             --------------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhhhh
Confidence                                      1123356678888777777777 6569999999976654433       45677


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-  346 (457)
                      ..|.+++++|..+.+||+++.|++.+|||++.-.....  .++           ....|...|.+..|||.+-.|++.+ 
T Consensus       323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~l-----------st~~HrrsV~sAyFSPs~gtl~TT~~  389 (498)
T KOG4328|consen  323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFL-----------STLPHRRSVNSAYFSPSGGTLLTTCQ  389 (498)
T ss_pred             cccceeecCCCCchheeecccCcceeeeehhhhcCCCC--cce-----------ecccccceeeeeEEcCCCCceEeecc
Confidence            89999999999989999999999999999987431100  011           1246788999999999876677655 


Q ss_pred             cCcEEEEecc---CCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721          347 YMNLKLWDIR---MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  423 (457)
Q Consensus       347 ~~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~  423 (457)
                      |..|+|||..   ....++..+. |...-.         .....+.+.|.|+..+|++|-.-..|-|+|-..+ +....+
T Consensus       390 D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~---------RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~el  458 (498)
T KOG4328|consen  390 DNEIRVFDSSCISAKDEPLGTIP-HNNRTG---------RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVCEL  458 (498)
T ss_pred             CCceEEeecccccccCCccceee-ccCccc---------ccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEeeec
Confidence            6999999983   1133444443 332211         1112257899999999999999999999998766 322222


Q ss_pred             e-cCCCccee-eeeccCCcceeccc
Q 012721          424 E-AGKNENRK-PILQAAPRARRSSL  446 (457)
Q Consensus       424 ~-~~~~~v~~-~~~~p~~~~~~~~~  446 (457)
                      - .....|.+ ..|||-+--.++|.
T Consensus       459 ~~P~~~tI~~vn~~HP~~~~~~aG~  483 (498)
T KOG4328|consen  459 HDPESSTIPSVNEFHPMRDTLAAGG  483 (498)
T ss_pred             cCccccccccceeecccccceeccC
Confidence            1 11223333 37888877555543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=2.5e-23  Score=189.37  Aligned_cols=265  Identities=14%  Similarity=0.194  Sum_probs=212.5

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|...|..+++.+ +..++++++||++++|+-..++-.                         ....+.+|.       
T Consensus        11 ~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l-------------------------~~~~~~~~~-------   57 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYL-------------------------ETHAFEGPK-------   57 (745)
T ss_pred             ccCccchheeEecC-CeEEeecCCCCceeeeeccCcccc-------------------------cceecccCc-------
Confidence            35899999998875 458899999999999997655432                         334566666       


Q ss_pred             cccccCcEEE-EEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          109 SLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       109 ~~~~~~~V~~-v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                           +-|.. ++|.+ .++-.+++|+.|.+|.+|.........+                                   
T Consensus        58 -----g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~-----------------------------------   96 (745)
T KOG0301|consen   58 -----GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYT-----------------------------------   96 (745)
T ss_pred             -----ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhh-----------------------------------
Confidence                 56666 88864 4555799999999999999877644322                                   


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                +.+|...|.|++...++. +++| .|.++++|-..   ++...       +++|
T Consensus        97 --------------------------LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~~-------l~gH  139 (745)
T KOG0301|consen   97 --------------------------LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVYS-------LQGH  139 (745)
T ss_pred             --------------------------hhccccceeeeecCCcCc-eEecccccceEEecch---hhhcc-------cCCc
Confidence                                      279999999999887777 8888 99999999765   33322       7899


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ...|+++..-|++  .+++|+.|.+|++|.-.+  ..    ++             |.+|..-|..+++-+++.++-++.
T Consensus       140 ~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~--~l----~t-------------f~gHtD~VRgL~vl~~~~flScsN  198 (745)
T KOG0301|consen  140 TASVWAVASLPEN--TYVTGSADKTIKLWKGGT--LL----KT-------------FSGHTDCVRGLAVLDDSHFLSCSN  198 (745)
T ss_pred             chheeeeeecCCC--cEEeccCcceeeeccCCc--hh----hh-------------hccchhheeeeEEecCCCeEeecC
Confidence            9999999999985  889999999999997532  21    33             456889999999999988888888


Q ss_pred             cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      ||.|++|++.  +..+..+.+|.+.+               ++++...++..++++++|++++||+..   .+.+.+.--
T Consensus       199 Dg~Ir~w~~~--ge~l~~~~ghtn~v---------------Ysis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lP  258 (745)
T KOG0301|consen  199 DGSIRLWDLD--GEVLLEMHGHTNFV---------------YSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLP  258 (745)
T ss_pred             CceEEEEecc--CceeeeeeccceEE---------------EEEEecCCCCeEEEecCCceEEEeecC---ceEEEEecC
Confidence            8999999994  88999999999876               688888888999999999999999987   466766655


Q ss_pred             CCcceeeeeccCCcceecc
Q 012721          427 KNENRKPILQAAPRARRSS  445 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~~  445 (457)
                      .-.++++.+-+++.....|
T Consensus       259 ttsiWsa~~L~NgDIvvg~  277 (745)
T KOG0301|consen  259 TTSIWSAKVLLNGDIVVGG  277 (745)
T ss_pred             ccceEEEEEeeCCCEEEec
Confidence            5578888888777776663

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.7e-22  Score=183.55  Aligned_cols=272  Identities=14%  Similarity=0.189  Sum_probs=213.0

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ..+|.||||+.+.+.||.+-.+|.|-||++...                          +-+...+.++.+         
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------w~~~~vi~g~~d---------   69 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------WFLEPVIHGPED---------   69 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------ceeeEEEecCCC---------
Confidence            679999999999999999999999999998753                          335566777663         


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        ..|.+++|+   ++..|.+.+.+|.|.-||+.+++.....                                      
T Consensus        70 --rsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~--------------------------------------  106 (691)
T KOG2048|consen   70 --RSIESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNI--------------------------------------  106 (691)
T ss_pred             --CceeeEEEc---cCCeEEeecCCceEEEEecccCceeEEe--------------------------------------
Confidence              789999993   5668999999999999999998765432                                      


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                             ....+.|++++.+|.+..++.| +||.++.++.. .+.....     ..+....+.+
T Consensus       107 -----------------------d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~-----r~l~rq~sRv  157 (691)
T KOG2048|consen  107 -----------------------DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYK-----RSLMRQKSRV  157 (691)
T ss_pred             -----------------------cCCCcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEE-----eecccccceE
Confidence                                   3455689999999999999998 99988888776 3332211     1244456899


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc-cccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~  348 (457)
                      .+++|+|++ ..|+.|+.||.|++||..++........ +... .         ..-..-|+++.|-.++ .|++|+. |
T Consensus       158 Lslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l-~---------k~~~~iVWSv~~Lrd~-tI~sgDS~G  225 (691)
T KOG2048|consen  158 LSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL-S---------KREPTIVWSVLFLRDS-TIASGDSAG  225 (691)
T ss_pred             EEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeeccccc-c---------cCCceEEEEEEEeecC-cEEEecCCc
Confidence            999999999 8899999999999999998865421000 1111 0         0012458888888655 7788876 9


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc---eeeEEec
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA---GGITVEA  425 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~  425 (457)
                      +|.+||... +.++..+..|..-+               .+++..+++.++++++.|+.|..+...+.+.   .......
T Consensus       226 ~V~FWd~~~-gTLiqS~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~  289 (691)
T KOG2048|consen  226 TVTFWDSIF-GTLIQSHSCHDADV---------------LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL  289 (691)
T ss_pred             eEEEEcccC-cchhhhhhhhhcce---------------eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence            999999986 89999998888754               7899999999999999999999999887744   3334568


Q ss_pred             CCCcceeeeeccC
Q 012721          426 GKNENRKPILQAA  438 (457)
Q Consensus       426 ~~~~v~~~~~~p~  438 (457)
                      |...+++++..++
T Consensus       290 h~hdvrs~av~~~  302 (691)
T KOG2048|consen  290 HAHDVRSMAVIEN  302 (691)
T ss_pred             Ccccceeeeeecc
Confidence            8889999988777

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=2.7e-23  Score=176.10  Aligned_cols=267  Identities=16%  Similarity=0.234  Sum_probs=186.4

Q ss_pred             cccCCceEEEEECCCC--CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           29 LQDVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      +.|.+.+..+.-++-+  .+.|+=+..|.|+||++...-.         .+...+..++  ..+.+.+.++.+|.     
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~---------~l~~~~~~~~--~s~~~Pl~t~~ghk-----  211 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN---------ALSEPGLEVK--DSEFRPLFTFNGHK-----  211 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhh---------hhcCcccccc--ccccCceEEecccC-----
Confidence            4578888888888754  5666678999999999864321         1111111111  12456777888888     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             +.=..++|+|...| .|++|..-+.|++|...+|....-.                                 
T Consensus       212 -------~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~---------------------------------  250 (440)
T KOG0302|consen  212 -------GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQ---------------------------------  250 (440)
T ss_pred             -------ccceeeeccccccc-ccccCccccceEeeeeccCceeecC---------------------------------
Confidence                   66789999764455 6888988899999999887654210                                 


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                           .    -+.+|+..|-.++|+|. ...|++| .|++|+|||++...+...+.      .+
T Consensus       251 ---------------------~----Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~------~k  299 (440)
T KOG0302|consen  251 ---------------------R----PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS------TK  299 (440)
T ss_pred             ---------------------c----cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE------ee
Confidence                                 0    01579999999999995 4567778 99999999999543333332      47


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC--eE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HL  342 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l  342 (457)
                      .|...|..|+|+..- .+||+|+.||+++|||+|+-+.              ..+...|.-|..+|+++.|+|...  +.
T Consensus       300 Ah~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~--------------~~pVA~fk~Hk~pItsieW~p~e~s~ia  364 (440)
T KOG0302|consen  300 AHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKS--------------GQPVATFKYHKAPITSIEWHPHEDSVIA  364 (440)
T ss_pred             ccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccC--------------CCcceeEEeccCCeeEEEeccccCceEE
Confidence            899999999999998 6999999999999999998432              133445677899999999999643  33


Q ss_pred             EEEecCcEEEEeccCCCC---------------ceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCC
Q 012721          343 LSRDYMNLKLWDIRMDST---------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSN  406 (457)
Q Consensus       343 ~s~~~~~i~~wd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg  406 (457)
                      ++|.|..|.+||+.....               +.+.+-.|.+..             .+-.+.|++. ..+|++.+-||
T Consensus       365 asg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-------------e~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  365 ASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-------------EVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             eccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-------------HhhhheeccCCCCeEEEecccc
Confidence            455679999999964211               011122232211             1247899986 45788888888


Q ss_pred             cEEEEe
Q 012721          407 LLRIFS  412 (457)
Q Consensus       407 ~i~iw~  412 (457)
                       +.||.
T Consensus       432 -fnVfk  436 (440)
T KOG0302|consen  432 -FNVFK  436 (440)
T ss_pred             -eeEEE
Confidence             44553

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.4e-22  Score=166.99  Aligned_cols=230  Identities=18%  Similarity=0.217  Sum_probs=181.1

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      +.|+++.|  +.+|.++++++.|.++++||..+++....+.                                       
T Consensus        15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~---------------------------------------   53 (311)
T KOG1446|consen   15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---------------------------------------   53 (311)
T ss_pred             CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEee---------------------------------------
Confidence            78999999  7999999999999999999999998766543                                       


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                            .+.-.+..++|.. +...+.+.  .|.+|+..++. ..+.++.       +.||...|
T Consensus        54 ----------------------skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-dNkylRY-------F~GH~~~V  103 (311)
T KOG1446|consen   54 ----------------------SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-DNKYLRY-------FPGHKKRV  103 (311)
T ss_pred             ----------------------cccccccEEEEecCCceEEEccCCCCCceEEEEee-cCceEEE-------cCCCCceE
Confidence                                  2333566677744 44444444  69999999999 6777776       79999999


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~  349 (457)
                      .+++.+|-+ ..+++++.|++|++||++..+..    ..+..               ..-..++|+|+|-++|++.. +.
T Consensus       104 ~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~---------------~~~pi~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen  104 NSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL---------------SGRPIAAFDPEGLIFALANGSEL  163 (311)
T ss_pred             EEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec---------------CCCcceeECCCCcEEEEecCCCe
Confidence            999999999 99999999999999999976533    22222               23345799999999999987 69


Q ss_pred             EEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721          350 LKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  428 (457)
Q Consensus       350 i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  428 (457)
                      |++||+++- +.+..++......-         .   ....+.|||||++|+.+...+.+++.|.-+| ....+++++..
T Consensus       164 IkLyD~Rs~dkgPF~tf~i~~~~~---------~---ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~  230 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFTTFSITDNDE---------A---EWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPN  230 (311)
T ss_pred             EEEEEecccCCCCceeEccCCCCc---------c---ceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccC
Confidence            999999864 45555555442111         0   1268999999999999999999999999999 67888887765


Q ss_pred             cc---eeeeeccCCcceecccc
Q 012721          429 EN---RKPILQAAPRARRSSLS  447 (457)
Q Consensus       429 ~v---~~~~~~p~~~~~~~~~~  447 (457)
                      .-   -...|+||+....+|-.
T Consensus       231 ~~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  231 AGNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             CCCcceeEEECCCCcEEEEecC
Confidence            54   56789999999988544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=2.1e-23  Score=188.11  Aligned_cols=286  Identities=19%  Similarity=0.247  Sum_probs=202.1

Q ss_pred             EEEEECC---CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           36 SAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        36 ~~~~~s~---~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      .+..|++   ...+||.+.+||.|.++|.....-                     .++...+..+..|.           
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f---------------------r~ee~~lk~~~aH~-----------  100 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF---------------------RLEERQLKKPLAHK-----------  100 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhc---------------------chhhhhhccccccc-----------
Confidence            3477776   346899999999999999875542                     12333345667787           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                       ..|.++.|.  |....|++++.|.++++||+.++++....                                       
T Consensus       101 -nAifDl~wa--pge~~lVsasGDsT~r~Wdvk~s~l~G~~---------------------------------------  138 (720)
T KOG0321|consen  101 -NAIFDLKWA--PGESLLVSASGDSTIRPWDVKTSRLVGGR---------------------------------------  138 (720)
T ss_pred             -ceeEeeccC--CCceeEEEccCCceeeeeeeccceeecce---------------------------------------
Confidence             889999995  56668999999999999999987654321                                       


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcce------eeee---ec---
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQC------FNIV---DM---  258 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~------~~~~---~~---  258 (457)
                                          +..+|...|.+++|.|. ...|++| .||.|.|||++..+..      .++.   ..   
T Consensus       139 --------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt  198 (720)
T KOG0321|consen  139 --------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT  198 (720)
T ss_pred             --------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence                                11689999999999994 5567778 9999999999853310      0000   00   


Q ss_pred             --CC-----CcccCCCCceEE---EEEecCCccEEEEEcc-CCeEEEEEccCCeeeccccccccccccccCcccceecc-
Q 012721          259 --KP-----SNMDDLTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-  326 (457)
Q Consensus       259 --~~-----~~~~~~~~~i~~---v~~~p~~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-  326 (457)
                        ++     ...+.+...|.+   +.+..|. ..||+++. |+.|+|||++.....      +..   .+.....+.-| 
T Consensus       199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~------~r~---ep~~~~~~~t~s  268 (720)
T KOG0321|consen  199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTA------YRQ---EPRGSDKYPTHS  268 (720)
T ss_pred             CCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccc------ccc---CCCcccCccCcc
Confidence              00     122345555555   5566676 78888887 999999999986432      111   11111112222 


Q ss_pred             --ccceEEEEEccCCCeEEE-EecCcEEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721          327 --IASISDIKFANDGQHLLS-RDYMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (457)
Q Consensus       327 --~~~v~~~~~s~~g~~l~s-~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  402 (457)
                        .-.+.++.....|.+|.+ +.|+.|++|++... ..++..+.++....           ++  ..-..+||+.+|++|
T Consensus       269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s-----------f~--vks~lSpd~~~l~Sg  335 (720)
T KOG0321|consen  269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS-----------FY--VKSELSPDDCSLLSG  335 (720)
T ss_pred             cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce-----------ee--eeeecCCCCceEecc
Confidence              346778888888888764 67899999999753 23455555544321           11  244678999999999


Q ss_pred             eCCCcEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721          403 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       403 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                      +.|...++|.+.+.+.....+.+|.-.|.+|.|.|.
T Consensus       336 Ssd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  336 SSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             CCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence            999999999999998889999999999999999875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=4.7e-23  Score=187.49  Aligned_cols=358  Identities=13%  Similarity=0.099  Sum_probs=234.7

Q ss_pred             CccccCCceEEEEECCCCC---EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccc-cCCCcccee--------
Q 012721           27 EELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS-TSHPEYRYK--------   94 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------   94 (457)
                      ..-+|++.|.+++|+..+.   +||+++.|..||||.+.-....       ...++...... +.-|.+...        
T Consensus       186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~-------~~~~~e~~~t~~~~~~~f~~l~~i~~~is  258 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE-------DSNEREDSLTTLSNLPVFMILEEIQYRIS  258 (764)
T ss_pred             EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc-------cccccccccccccCCceeeeeeeEEEEEe
Confidence            3456999999999988554   8899999999999998644321       00011110000 011111111        


Q ss_pred             --eeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccc--ceeEEEeecCCC----ceeeeee
Q 012721           95 --TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KVKKIKEMDHFP----FVSSENT  166 (457)
Q Consensus        95 --~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~--~~~~~~~~~~~~----~~~~~~~  166 (457)
                        +.+.||+            +.|.++.|  +|.+..|++++.|.++.+|.-.+.  -.........-.    .....-|
T Consensus       259 ~eall~GHe------------DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw  324 (764)
T KOG1063|consen  259 FEALLMGHE------------DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW  324 (764)
T ss_pred             hhhhhcCcc------------cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence              2234676            89999999  678889999999999999986654  333332221110    0011111


Q ss_pred             ccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEE
Q 012721          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (457)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd  245 (457)
                      ++..           ..++..+   -.+..++|.............. .+|...|..++|+|.|++|++. .|.+-++|-
T Consensus       325 ~~n~-----------~~ii~~g---~~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa  389 (764)
T KOG1063|consen  325 SPNS-----------NVIIAHG---RTGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA  389 (764)
T ss_pred             cCCC-----------CEEEEec---ccCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeec
Confidence            1111           1111111   1335677773333333333333 8999999999999999999998 999999987


Q ss_pred             cCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCe----------ee------------
Q 012721          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA----------LC------------  303 (457)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~----------~~------------  303 (457)
                      .-..++....+    ..-+-|....+|++|-+.. ..+++|.....+|+|+....-          ..            
T Consensus       390 ~wg~q~~wHEi----aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V  464 (764)
T KOG1063|consen  390 RWGRQQEWHEI----ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV  464 (764)
T ss_pred             ccccccceeee----cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence            65222222222    1235688889999998864 789999999999999876420          00            


Q ss_pred             ----cccccccc-----c-c----------------cccc-----------CcccceeccccceEEEEEccCCCeEEEEe
Q 012721          304 ----DHSARILR-----D-A----------------AESH-----------GSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       304 ----~~~~~~~~-----~-~----------------~~~~-----------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                          ......+.     + +                ...|           .....+.||...|++++.+|+|+++|+++
T Consensus       465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaC  544 (764)
T KOG1063|consen  465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASAC  544 (764)
T ss_pred             ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehh
Confidence                00000010     0 0                0000           01145679999999999999999999874


Q ss_pred             -----c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCce-
Q 012721          347 -----Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-  419 (457)
Q Consensus       347 -----~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~-  419 (457)
                           . -.|++|+... -.....+.+|+-.+               +.++|||||++|++.+.|+++.+|+....... 
T Consensus       545 KS~~~ehAvI~lw~t~~-W~~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e  608 (764)
T KOG1063|consen  545 KSSLKEHAVIRLWNTAN-WLQVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE  608 (764)
T ss_pred             hhCCccceEEEEEeccc-hhhhheecccceEE---------------EEEEECCCCcEEEEeecCceEEeeeeecccchh
Confidence                 2 6799999875 55666888998765               79999999999999999999999998765333 


Q ss_pred             --eeEEecCCCcceeeeeccCCcc
Q 012721          420 --GITVEAGKNENRKPILQAAPRA  441 (457)
Q Consensus       420 --~~~~~~~~~~v~~~~~~p~~~~  441 (457)
                        ....+.|..-|....|+|+..-
T Consensus       609 ~~fa~~k~HtRIIWdcsW~pde~~  632 (764)
T KOG1063|consen  609 FRFACLKAHTRIIWDCSWSPDEKY  632 (764)
T ss_pred             hhhccccccceEEEEcccCcccce
Confidence              3337899999999999999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=2e-23  Score=183.11  Aligned_cols=277  Identities=14%  Similarity=0.191  Sum_probs=213.4

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ..+.|.+-|.++++|...+++.||+. |.|+|||+......                        ..+..|..-+.    
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------------~PvsqLdcl~r----  464 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------------SPVSQLDCLNR----  464 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------------CccccccccCc----
Confidence            34669999999999999999999986 56999999765421                        12333333221    


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                            +.-|.++..  .+||..|++|++-.++.|||+..........                                
T Consensus       465 ------dnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikae--------------------------------  504 (705)
T KOG0639|consen  465 ------DNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAE--------------------------------  504 (705)
T ss_pred             ------ccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhh--------------------------------
Confidence                  255777887  6899999999999999999997653221100                                


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                 +....-.++.++.+||.+..++| .||.|.|||+. ....++.       +++
T Consensus       505 ---------------------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~Vrq-------fqG  549 (705)
T KOG0639|consen  505 ---------------------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQG  549 (705)
T ss_pred             ---------------------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeec-------ccC
Confidence                                       02223357789999999999999 99999999999 5555543       899


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      |.+.+.||..+++| ..|-+|+.|++||.||++++...       ..|.           ..+.|.++.++|++.+|+.|
T Consensus       550 htDGascIdis~dG-tklWTGGlDntvRcWDlregrql-------qqhd-----------F~SQIfSLg~cP~~dWlavG  610 (705)
T KOG0639|consen  550 HTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQL-------QQHD-----------FSSQIFSLGYCPTGDWLAVG  610 (705)
T ss_pred             CCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhh-------hhhh-----------hhhhheecccCCCccceeee
Confidence            99999999999999 99999999999999999998533       2211           13579999999999999999


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      -. +.+.+....  +.....+..|+..+               .++.|.+-|+++++.+.|+.+..|...-| ..++ -.
T Consensus       611 Mens~vevlh~s--kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLnawrtPyG-asiF-qs  671 (705)
T KOG0639|consen  611 MENSNVEVLHTS--KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIF-QS  671 (705)
T ss_pred             cccCcEEEEecC--CccceeecccccEE---------------EEEEecccCceeeecCchhhhhhccCccc-ccee-ec
Confidence            76 888777764  45556666677654               79999999999999999999999999888 3333 23


Q ss_pred             cCCCcceeeeeccCCcceecc
Q 012721          425 AGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       425 ~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      ...++|.+...+-+..-...|
T Consensus       672 kE~SsVlsCDIS~ddkyIVTG  692 (705)
T KOG0639|consen  672 KESSSVLSCDISFDDKYIVTG  692 (705)
T ss_pred             cccCcceeeeeccCceEEEec
Confidence            457788888888887776664

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=2.4e-21  Score=175.75  Aligned_cols=293  Identities=10%  Similarity=0.086  Sum_probs=189.5

Q ss_pred             CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEe
Q 012721           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (457)
Q Consensus        44 ~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~  123 (457)
                      ++++++++.|+.|++||+.+++.                           +..+.++.             .+.+++|  
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~---------------------------~~~~~~~~-------------~~~~l~~--   38 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEV---------------------------TRTFPVGQ-------------RPRGITL--   38 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCce---------------------------EEEEECCC-------------CCCceEE--
Confidence            35788999999999999887653                           34444443             3567899  


Q ss_pred             cCCCCEE-EEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEecc
Q 012721          124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG  202 (457)
Q Consensus       124 s~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  202 (457)
                      ++++..+ ++++.++.|++||..+++....+..  ...+..+.+++....++...             ..++.+++||+.
T Consensus        39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~-------------~~~~~l~~~d~~  103 (300)
T TIGR03866        39 SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--GPDPELFALHPNGKILYIAN-------------EDDNLVTVIDIE  103 (300)
T ss_pred             CCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--CCCccEEEECCCCCEEEEEc-------------CCCCeEEEEECC
Confidence            6888876 5667889999999998876544322  22233344433222221111             123579999987


Q ss_pred             CccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC-CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc
Q 012721          203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (457)
Q Consensus       203 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~  280 (457)
                      ..   +.+..+  .+...+.+++|+|++.+++++ .+ ..+.+||.+ ........       . ....+.+++|+|++ 
T Consensus       104 ~~---~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~-------~-~~~~~~~~~~s~dg-  168 (300)
T TIGR03866       104 TR---KVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNV-------L-VDQRPRFAEFTADG-  168 (300)
T ss_pred             CC---eEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEE-------E-cCCCccEEEECCCC-
Confidence            53   233332  223346789999999999988 55 467788987 44433321       1 12345678999999 


Q ss_pred             cEEE-EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE--ecCcEEEEeccC
Q 012721          281 NLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DYMNLKLWDIRM  357 (457)
Q Consensus       281 ~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~--~~~~i~~wd~~~  357 (457)
                      .+|+ ++..++.|++||+++++..    ..+..+....      .........++|+|++++++.+  +++.+.+||+++
T Consensus       169 ~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~------~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       169 KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGV------HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             CEEEEEcCCCCEEEEEEcCcceee----eeeeeccccc------ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            7664 5557999999999987543    1111100000      0001123468899999986543  347899999975


Q ss_pred             CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721          358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  436 (457)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~  436 (457)
                       ++....+... ..+               .+++|+|+|++|++++ .++.|.+||+.++ +.+..++.... .+.++++
T Consensus       239 -~~~~~~~~~~-~~~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~-~~~~~~~  299 (300)
T TIGR03866       239 -YEVLDYLLVG-QRV---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKSIKVGRL-PWGVVVR  299 (300)
T ss_pred             -CcEEEEEEeC-CCc---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEEEcccc-cceeEeC
Confidence             5655444322 222               5899999999998864 6899999999998 66666766544 4888877


Q ss_pred             c
Q 012721          437 A  437 (457)
Q Consensus       437 p  437 (457)
                      |
T Consensus       300 ~  300 (300)
T TIGR03866       300 P  300 (300)
T ss_pred             C
Confidence            5

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=7.7e-22  Score=183.27  Aligned_cols=325  Identities=16%  Similarity=0.208  Sum_probs=224.9

Q ss_pred             CCccccC-CceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcc
Q 012721           26 DEELQDV-DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (457)
Q Consensus        26 ~~~~~h~-~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (457)
                      ...+.|. +.|++++|..||+ +||+|+..|.+.+||++..+..                          ......|.  
T Consensus       237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~--------------------------~v~~nah~--  288 (910)
T KOG1539|consen  237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI--------------------------NVTRNAHY--  288 (910)
T ss_pred             EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee--------------------------eeeecccc--
Confidence            3445675 9999999999995 5677888899999999987642                          12334676  


Q ss_pred             ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccce----eEEEeecCCCceeeeeeccccccccccCCC
Q 012721          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV----KKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (457)
Q Consensus       104 ~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (457)
                                ++|....|+  +....+++++.|+.+++|=.+++..    .+. ......+..++.|...++..+-+...
T Consensus       289 ----------~sv~~~~fl--~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~  355 (910)
T KOG1539|consen  289 ----------GSVTGATFL--PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQ  355 (910)
T ss_pred             ----------CCcccceec--CCCceEeeccCCCceeEEEeeCCCCcchheee-ccCCCCCchheeeeccCcEEEEeccc
Confidence                      889999996  5566899999999999997664322    222 22223334455555444433322220


Q ss_pred             -C---------------------------------------Cce-eccCC----ccc-------cccceEEEeccCcccc
Q 012721          180 -P---------------------------------------SFA-HGYHL----EWT-------ENMATKIANVGNSVHA  207 (457)
Q Consensus       180 -~---------------------------------------~~~-~~~~~----~~~-------~~~~i~~~~~~~~~~~  207 (457)
                       .                                       +.. +....    .|+       .....+.|+......+
T Consensus       356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G  435 (910)
T KOG1539|consen  356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG  435 (910)
T ss_pred             CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc
Confidence             0                                       000 00000    011       1115667888765554


Q ss_pred             ccceee--ccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721          208 RCQKVY--PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (457)
Q Consensus       208 ~~~~~~--~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~  284 (457)
                      +..-..  ++.....+++++.++.|++.+.| ..|.|-+|++. .+.....+.    .-..|..+|+.++....+ +.++
T Consensus       436 ~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ-SGi~r~sf~----~~~ah~~~V~gla~D~~n-~~~v  509 (910)
T KOG1539|consen  436 RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ-SGIHRKSFG----DSPAHKGEVTGLAVDGTN-RLLV  509 (910)
T ss_pred             cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc-cCeeecccc----cCccccCceeEEEecCCC-ceEE
Confidence            332111  12245678899999999999999 99999999999 565544321    125799999999999888 9999


Q ss_pred             EEccCCeEEEEEccCCeeecc--------------------------ccccccccccccCcccceeccccceEEEEEccC
Q 012721          285 YSSSRGFVRLVDMRQSALCDH--------------------------SARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (457)
Q Consensus       285 ~~~~dg~i~lwd~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  338 (457)
                      +++.+|.+++||..+..+...                          .+.+++.  ........|.+|...|++++||||
T Consensus       510 sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~--~t~kvvR~f~gh~nritd~~FS~D  587 (910)
T KOG1539|consen  510 SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV--VTRKVVREFWGHGNRITDMTFSPD  587 (910)
T ss_pred             EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc--hhhhhhHHhhccccceeeeEeCCC
Confidence            999999999999988653210                          0001110  011123557899999999999999


Q ss_pred             CCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-CcEEEEecCCC
Q 012721          339 GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSHGVG  416 (457)
Q Consensus       339 g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~i~iw~~~~~  416 (457)
                      |++|++++ |++|++||+-+ +.++..+......                +++.|+|+|.+||+...| .-|++|.-++.
T Consensus       588 grWlisasmD~tIr~wDlpt-~~lID~~~vd~~~----------------~sls~SPngD~LAT~Hvd~~gIylWsNksl  650 (910)
T KOG1539|consen  588 GRWLISASMDSTIRTWDLPT-GTLIDGLLVDSPC----------------TSLSFSPNGDFLATVHVDQNGIYLWSNKSL  650 (910)
T ss_pred             CcEEEEeecCCcEEEEeccC-cceeeeEecCCcc----------------eeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence            99999987 59999999986 7888777655443                689999999999999998 67999987765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.3e-23  Score=191.74  Aligned_cols=255  Identities=15%  Similarity=0.186  Sum_probs=200.8

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ....-.-.++|++.||+|++||+|..-|+++||++...+                           +...+..|+     
T Consensus       454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~---------------------------~~~~~eAHe-----  501 (1080)
T KOG1408|consen  454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE---------------------------YTCFMEAHE-----  501 (1080)
T ss_pred             hhcCcccceEEEEECCCcceecccCccCceEEEEehhhh---------------------------hhhheeccc-----
Confidence            333456789999999999999999999999999998665                           345678888     


Q ss_pred             cccccccCcEEEEEEEecCC--CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          107 LKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                             ..|.|+.|+ .|.  .++|++++.|+.|.++|+.....                                   
T Consensus       502 -------sEilcLeyS-~p~~~~kLLASasrdRlIHV~Dv~rny~-----------------------------------  538 (1080)
T KOG1408|consen  502 -------SEILCLEYS-FPVLTNKLLASASRDRLIHVYDVKRNYD-----------------------------------  538 (1080)
T ss_pred             -------ceeEEEeec-CchhhhHhhhhccCCceEEEEecccccc-----------------------------------
Confidence                   779999995 233  56899999999999999865421                                   


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                                              .++++ .+|...|+++.|.-+|  ..++++ .|+.|.+--.. ......++ +. .
T Consensus       539 ------------------------l~qtl-d~HSssITsvKFa~~gln~~MiscGADksimFr~~q-k~~~g~~f-~r-~  590 (1080)
T KOG1408|consen  539 ------------------------LVQTL-DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQ-KASSGRLF-PR-H  590 (1080)
T ss_pred             ------------------------hhhhh-cccccceeEEEEeecCCceEEEeccCchhhheehhc-cccCceec-cc-c
Confidence                                    11122 7899999999997666  566776 88887654332 11111111 00 0


Q ss_pred             cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~  341 (457)
                      +-.-....++.++..|.. +++++++.|..|+|||+.+++..    +.|++          -.+|.+..-.+...|.|-|
T Consensus       591 t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq~----k~FKg----------s~~~eG~lIKv~lDPSgiY  655 (1080)
T KOG1408|consen  591 TQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQV----KSFKG----------SRDHEGDLIKVILDPSGIY  655 (1080)
T ss_pred             ccccccceEEEeeeCCCc-ceEEEEecccceEEEecccccee----eeecc----------cccCCCceEEEEECCCccE
Confidence            011123568999999998 99999999999999999999766    77776          2456678889999999999


Q ss_pred             EEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721          342 LLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       342 l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      ||+. +|.++.++|..+ ++++.++.+|...+               +.+.|.+|-+.|++.+.||.|.||.+..
T Consensus       656 ~atScsdktl~~~Df~s-gEcvA~m~GHsE~V---------------TG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  656 LATSCSDKTLCFVDFVS-GECVAQMTGHSEAV---------------TGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEEeecCCceEEEEecc-chhhhhhcCcchhe---------------eeeeecccchhheeecCCceEEEEECch
Confidence            9975 679999999986 99999999999876               7999999999999999999999999865

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8.7e-23  Score=169.39  Aligned_cols=297  Identities=14%  Similarity=0.170  Sum_probs=199.6

Q ss_pred             eeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeE--EEeec-CCCceeeeeecccc
Q 012721           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMD-HFPFVSSENTLLAE  170 (457)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~  170 (457)
                      +..|++|.            +.|++++|  +.||++|++++.|++|++|++++-....  .+..+ .-...+.+.|.++-
T Consensus        79 ~~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc  144 (420)
T KOG2096|consen   79 VSVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC  144 (420)
T ss_pred             hhhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc
Confidence            44677888            88999999  7999999999999999999987632211  11100 00123444444433


Q ss_pred             ccccccCCCCCceeccCCccccccceEEEeccCccccccc--------eeeccCCCCCeeEEEeCCCCCEEEEe-CCCeE
Q 012721          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQ--------KVYPHAHDFNINSISNNSDCETFVSA-DDLRI  241 (457)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i  241 (457)
                      ..++....             .+..+++|.+.....+...        ..+..-|...+..+-...++.+|+++ .|..|
T Consensus       145 ~s~vv~~~-------------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i  211 (420)
T KOG2096|consen  145 KSVVVSVK-------------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKI  211 (420)
T ss_pred             ceEEEEEc-------------cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcE
Confidence            33222211             2335555554432222110        11224566677777788889999999 99999


Q ss_pred             EEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCee--eccccccccccccccCc
Q 012721          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGS  319 (457)
Q Consensus       242 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~  319 (457)
                      .+|+++  ++.+..++.+       ...-+..+.+|+| +++++++..--|++|.+--++.  .....+.|         
T Consensus       212 ~lw~lk--Gq~L~~idtn-------q~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf---------  272 (420)
T KOG2096|consen  212 CLWDLK--GQLLQSIDTN-------QSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF---------  272 (420)
T ss_pred             EEEecC--Cceeeeeccc-------cccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhh---------
Confidence            999998  6777665433       2344567899999 9999999999999998643211  11111222         


Q ss_pred             ccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCC------CCceeEeee--ccccccccccccCCCCccccceE
Q 012721          320 KSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD------STPVATFKI--HEHLRPKLCDLYNNDSIFDKFEC  390 (457)
Q Consensus       320 ~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~  390 (457)
                        .+.+|.+.|..++|+++.+.+++.+ ||++++||++-.      .+.++....  |.....             -..+
T Consensus       273 --~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~-------------p~RL  337 (420)
T KOG2096|consen  273 --SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE-------------PVRL  337 (420)
T ss_pred             --eeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC-------------ceEE
Confidence              3589999999999999999999987 599999998531      122322211  111000             0379


Q ss_pred             EEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecccccccccccc
Q 012721          391 SVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR  455 (457)
Q Consensus       391 ~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~  455 (457)
                      +++|.|+.||.+. ...++++..++|+.....-..|...+.+++|+|+|...++   ...|..|.
T Consensus       338 ~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at---cGdr~vrv  398 (420)
T KOG2096|consen  338 ELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT---CGDRYVRV  398 (420)
T ss_pred             EeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee---ecceeeee
Confidence            9999999887654 4679999999997777777899999999999999987765   44555543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8.2e-23  Score=177.87  Aligned_cols=237  Identities=18%  Similarity=0.280  Sum_probs=179.5

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      -.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..                           +..+.+|-         
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---------------------------L~v~~aHY---------  123 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---------------------------LNVLSAHY---------  123 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccH---------------------------HHHHHhhc---------
Confidence            368899999999999999998999999999999984                           45678888         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ..|+++.|  +.||.+|++|+.||.|.+|.+..--                                          
T Consensus       124 ---Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv------------------------------------------  156 (476)
T KOG0646|consen  124 ---QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLV------------------------------------------  156 (476)
T ss_pred             ---cceeEEEE--eCCCcEEEecCCCccEEEEEEEeec------------------------------------------
Confidence               88999999  7999999999999999999975421                                          


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                               +........++..+ .+|.-+|+.+...+.  ..+++++ .|.++++||+. .+..+..+.        ..
T Consensus       157 ---------~a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~g~LLlti~--------fp  217 (476)
T KOG0646|consen  157 ---------SADNDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-LGVLLLTIT--------FP  217 (476)
T ss_pred             ---------ccccCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEec-cceeeEEEe--------cC
Confidence                     00000122444444 789999999988653  3567777 99999999999 555554432        33


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc--ceEEEEEccCCCeEEEE
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR  345 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~  345 (457)
                      ..+.+++.+|-+ ..+.+|+.+|.|.+.++.+-......+. .+...........+.+|..  .|+|++++-||.+|++|
T Consensus       218 ~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG  295 (476)
T KOG0646|consen  218 SSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVN-QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG  295 (476)
T ss_pred             CcceeEEEcccc-cEEEecCCcceEEeeehhcCCccccccc-ccccccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence            779999999998 9999999999999988865431111011 1111223333456778888  99999999999999999


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccc
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLR  372 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~  372 (457)
                      +. |.|++||+.+ .++++++....+++
T Consensus       296 d~dg~VcvWdi~S-~Q~iRtl~~~kgpV  322 (476)
T KOG0646|consen  296 DEDGKVCVWDIYS-KQCIRTLQTSKGPV  322 (476)
T ss_pred             CCCCCEEEEecch-HHHHHHHhhhcccc
Confidence            85 9999999975 77777766444443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=5.6e-24  Score=179.33  Aligned_cols=274  Identities=18%  Similarity=0.245  Sum_probs=190.0

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCC-CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (457)
                      ++..|.||.            ++|.+++=+  |.. ..+++|+.||.|++||+....+...+..+.. .|..+.+..  .
T Consensus        58 Fv~~L~gHr------------dGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-~V~Gi~v~~--~  120 (433)
T KOG0268|consen   58 FVGSLDGHR------------DGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG-LVRGICVTQ--T  120 (433)
T ss_pred             chhhccccc------------cccchhhcC--cchhhhhhccccCceEEEEehhhhhhhheeecccC-ceeeEEecc--c
Confidence            566788898            899999985  443 5799999999999999988766555443221 122222221  1


Q ss_pred             cccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcc
Q 012721          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ  251 (457)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~  251 (457)
                      ..+..              ..+..++.|.++..    +++++  .-...+..+.-+..+..+++| ...|.|||.. ...
T Consensus       121 ~~~tv--------------gdDKtvK~wk~~~~----p~~ti--lg~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~-R~~  178 (433)
T KOG0268|consen  121 SFFTV--------------GDDKTVKQWKIDGP----PLHTI--LGKSVYLGIDHHRKNSVFATC-GEQIDIWDEQ-RDN  178 (433)
T ss_pred             ceEEe--------------cCCcceeeeeccCC----cceee--ecccccccccccccccccccc-Cceeeecccc-cCC
Confidence            11111              12447777777652    33333  112334455555445555555 2357788876 344


Q ss_pred             eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  331 (457)
                      +++.       +.=....|.++.|+|....+|+++..|+.|.|||++++..+.+.+..                  ..-+
T Consensus       179 Pv~s-------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------------------mRTN  233 (433)
T KOG0268|consen  179 PVSS-------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------------------MRTN  233 (433)
T ss_pred             ccce-------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee------------------cccc
Confidence            4433       23344678999999988778999999999999999998655322222                  3457


Q ss_pred             EEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721          332 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  410 (457)
Q Consensus       332 ~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i  410 (457)
                      .++|+|.+-.+++|++ ..++.||++....++..+.+|...+               ++++|||.|+-+++||.|.+|+|
T Consensus       234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRI  298 (433)
T KOG0268|consen  234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRI  298 (433)
T ss_pred             ceecCccccceeeccccccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEE
Confidence            8999997766667764 9999999987778888888888765               79999999999999999999999


Q ss_pred             EecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       411 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      |.++.+.....-...-...|.+|.|+.|..-..+|
T Consensus       299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SG  333 (433)
T KOG0268|consen  299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISG  333 (433)
T ss_pred             eecCCCcchhhhhHhhhheeeEEEEeccccEEEec
Confidence            99998743333333345678999999998877773

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=6.9e-23  Score=178.34  Aligned_cols=236  Identities=15%  Similarity=0.093  Sum_probs=183.3

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ++|.+++-  +++|.+++.|+..|.|++|.+.+|.+..++                                        
T Consensus        82 g~v~al~s--~n~G~~l~ag~i~g~lYlWelssG~LL~v~----------------------------------------  119 (476)
T KOG0646|consen   82 GPVHALAS--SNLGYFLLAGTISGNLYLWELSSGILLNVL----------------------------------------  119 (476)
T ss_pred             cceeeeec--CCCceEEEeecccCcEEEEEeccccHHHHH----------------------------------------
Confidence            77999988  789988888889999999999999765431                                        


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCC-CcccCCCCceE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVIT  271 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~i~  271 (457)
                                           .+|-..|+|+.|+.||.+|++| .||.|.+|.+..--........+| ..+..|.-+|+
T Consensus       120 ---------------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT  178 (476)
T KOG0646|consen  120 ---------------------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT  178 (476)
T ss_pred             ---------------------HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeE
Confidence                                 5799999999999999999999 999999998753211111111222 34788999999


Q ss_pred             EEEEecCCc-cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721          272 SAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (457)
Q Consensus       272 ~v~~~p~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~  349 (457)
                      ++...+.|. ..++++|.|.++++||+..+.+..    .+..              ...+.+++.+|.++.+..|+. |.
T Consensus       179 Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl----ti~f--------------p~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  179 DLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL----TITF--------------PSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             EEEecCCCccceEEEecCCceEEEEEeccceeeE----EEec--------------CCcceeEEEcccccEEEecCCcce
Confidence            999887642 489999999999999999987652    2211              257999999999999999975 99


Q ss_pred             EEEEeccCCC---------------CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          350 LKLWDIRMDS---------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       350 i~~wd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      |.+.++....               .....+.+|.+.             ..|++++.+-||..|++|+.||.|+|||+.
T Consensus       241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-------------~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-------------SAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             EEeeehhcCCcccccccccccccccceeeeeccccCC-------------cceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            9888774311               123344455552             134799999999999999999999999999


Q ss_pred             CCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          415 VGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       415 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +. +++.++....+||+.+.+.|-.+....
T Consensus       308 S~-Q~iRtl~~~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  308 SK-QCIRTLQTSKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             hH-HHHHHHhhhccccceeEeeccccceec
Confidence            88 777777778999999999766544443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.8e-22  Score=164.81  Aligned_cols=251  Identities=14%  Similarity=0.216  Sum_probs=188.1

Q ss_pred             EEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEecCC
Q 012721           47 LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN  126 (457)
Q Consensus        47 latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~  126 (457)
                      |++|++...|.-+++.-...               ....+..|....+-.+..|.            ++|++++.    +
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~---------------~~~~s~~~~l~~lF~~~aH~------------~sitavAV----s   52 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPK---------------GCTDSVKPTLKPLFAFSAHA------------GSITALAV----S   52 (362)
T ss_pred             EEEeeeeeEEEEEEeccCcc---------------ccccccceeeeccccccccc------------cceeEEEe----c
Confidence            67788877676666653321               00012223444455677777            99999998    5


Q ss_pred             CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccc
Q 012721          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  206 (457)
Q Consensus       127 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  206 (457)
                      +.++++|+.|.+|+|||+........+                                                     
T Consensus        53 ~~~~aSGssDetI~IYDm~k~~qlg~l-----------------------------------------------------   79 (362)
T KOG0294|consen   53 GPYVASGSSDETIHIYDMRKRKQLGIL-----------------------------------------------------   79 (362)
T ss_pred             ceeEeccCCCCcEEEEeccchhhhcce-----------------------------------------------------
Confidence            779999999999999999876433221                                                     


Q ss_pred             cccceeeccCCCCCeeEEEeCCCCC--EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEE
Q 012721          207 ARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  283 (457)
Q Consensus       207 ~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l  283 (457)
                              ..|.+.|+++.|.++-.  .|++| .||.|.+|+.. .-.....       +++|.+.|+.++.+|.+ ++-
T Consensus        80 --------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~s-------lK~H~~~Vt~lsiHPS~-KLA  142 (362)
T KOG0294|consen   80 --------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKS-------LKAHKGQVTDLSIHPSG-KLA  142 (362)
T ss_pred             --------eccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeee-------ecccccccceeEecCCC-ceE
Confidence                    46889999999988654  78888 99999999998 4455544       78999999999999999 999


Q ss_pred             EEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCcee
Q 012721          284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA  363 (457)
Q Consensus       284 ~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~  363 (457)
                      ++.+.|+.+++||+-.++..    .+...              ....+.+.|+|.|.+++.+....|-+|.++. .....
T Consensus       143 LsVg~D~~lr~WNLV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~-A~v~~  203 (362)
T KOG0294|consen  143 LSVGGDQVLRTWNLVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDN-ASVFR  203 (362)
T ss_pred             EEEcCCceeeeehhhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEeccEEEEEeccc-HhHhh
Confidence            99999999999999887532    12221              1234559999999988888778999999875 34433


Q ss_pred             EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeee
Q 012721          364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL  435 (457)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~  435 (457)
                      .+......                .++.|- ++..|++|++|+.|.+||.++. .+...+.+|...|..+.+
T Consensus       204 ~i~~~~r~----------------l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~  257 (362)
T KOG0294|consen  204 EIENPKRI----------------LCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIAS  257 (362)
T ss_pred             hhhccccc----------------eeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEE
Confidence            33322111                244443 6788999999999999999987 788999999999999974

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=1.3e-22  Score=185.28  Aligned_cols=330  Identities=11%  Similarity=0.122  Sum_probs=222.8

Q ss_pred             hhHHhhhcCCCCCCccccCCceEEEEECCC-----------CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhccc
Q 012721           14 WKCSQAFGERNPDEELQDVDIVSAIEFDKT-----------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD   82 (457)
Q Consensus        14 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-----------~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   82 (457)
                      |++.-+.+-..--..+.|..-|+.+.--|.           ...++|++.|++|++|+++.....+..   ++.+-....
T Consensus       351 WDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vy---rRNils~~l  427 (1080)
T KOG1408|consen  351 WDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVY---RRNILSANL  427 (1080)
T ss_pred             EeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccccccee---ecccchhhh
Confidence            444433332223344568888888876651           235789999999999999874432111   111100000


Q ss_pred             -ccccCCCccceeeeeccCCcccc--ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCC
Q 012721           83 -FTSTSHPEYRYKTEFQSHEPEFD--YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP  159 (457)
Q Consensus        83 -~~~~~~~~~~~~~~~~~h~~~~~--~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~  159 (457)
                       .+-....+.+.+..  ...+-|+  ........-.+.+++.  +|+|++|++|..-|++++|++.+-+....+      
T Consensus       428 ~ki~y~d~~~q~~~d--~~~~~fdka~~s~~d~r~G~R~~~v--Sp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~------  497 (1080)
T KOG1408|consen  428 SKIPYEDSTQQIMHD--ASAGIFDKALVSTCDSRFGFRALAV--SPDGQHLASGDRGGNLRVYDLQELEYTCFM------  497 (1080)
T ss_pred             hcCccccCchhhhhh--ccCCcccccchhhcCcccceEEEEE--CCCcceecccCccCceEEEEehhhhhhhhe------
Confidence             00000000000000  0001111  1222333367899999  899999999999999999999876543321      


Q ss_pred             ceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCEEEEe
Q 012721          160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA  236 (457)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~  236 (457)
                                                                             ..|...|.|+.|+.   ..++|+++
T Consensus       498 -------------------------------------------------------eAHesEilcLeyS~p~~~~kLLASa  522 (1080)
T KOG1408|consen  498 -------------------------------------------------------EAHESEILCLEYSFPVLTNKLLASA  522 (1080)
T ss_pred             -------------------------------------------------------ecccceeEEEeecCchhhhHhhhhc
Confidence                                                                   68999999999974   35688888


Q ss_pred             -CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCC-ccEEEEEccCCeEEEEEccCCeeeccccccccccc
Q 012721          237 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (457)
Q Consensus       237 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~  314 (457)
                       .|..|++||+...-..++       ++.+|...|+++.|.-.| ...+++++.|..|.+--.+....    ..++..|+
T Consensus       523 srdRlIHV~Dv~rny~l~q-------tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~----g~~f~r~t  591 (1080)
T KOG1408|consen  523 SRDRLIHVYDVKRNYDLVQ-------TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS----GRLFPRHT  591 (1080)
T ss_pred             cCCceEEEEecccccchhh-------hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC----ceeccccc
Confidence             999999999984444443       478999999999998765 34788899998876533332110    12222211


Q ss_pred             cccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc
Q 012721          315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  393 (457)
Q Consensus       315 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  393 (457)
                      ..        -....++.|+..|..+++++++ |..|+|||+.. ++..+.|++..+.-..            ...+...
T Consensus       592 ~t--------~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~------------lIKv~lD  650 (1080)
T KOG1408|consen  592 QT--------LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGD------------LIKVILD  650 (1080)
T ss_pred             cc--------cccceEEEeeeCCCcceEEEEecccceEEEeccc-cceeeeecccccCCCc------------eEEEEEC
Confidence            11        1125689999999999999876 59999999986 8989888875433211            1478899


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          394 GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       394 ~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      |.|.|||+.+.|.++.++|..+| ++...+.||...|+.|.|.+|=....+
T Consensus       651 PSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDCkHlIS  700 (1080)
T KOG1408|consen  651 PSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDCKHLIS  700 (1080)
T ss_pred             CCccEEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccchhhee
Confidence            99999999999999999999999 788999999999999999999655443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=9.3e-23  Score=172.87  Aligned_cols=257  Identities=17%  Similarity=0.190  Sum_probs=188.0

Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                      +.+.|-+.|+.+.-.+-.+..+.++-+..|.|+||++........ ..                                
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~-~~--------------------------------  192 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS-EP--------------------------------  192 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc-Cc--------------------------------
Confidence            344555778888775444556667778999999999865311000 00                                


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                             ...+-+    ...+++.++ .+|...=+.++|+| ....|++| .-+.|++|...+ + ...   +.+..+.+
T Consensus       193 -------~~~~~~----s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g-~W~---vd~~Pf~g  255 (440)
T KOG0302|consen  193 -------GLEVKD----SEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-G-SWK---VDQRPFTG  255 (440)
T ss_pred             -------cccccc----cccCceEEe-cccCccceeeecccccccccccCccccceEeeeecc-C-cee---ecCccccc
Confidence                   000000    123455555 78999999999999 33357888 889999999884 2 222   22344788


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      |...|-.++|+|.....|++||-||+|+|||+|.+....   .+            ....|.+.|+.+.|+....+||+|
T Consensus       256 H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~---~~------------~~kAh~sDVNVISWnr~~~lLasG  320 (440)
T KOG0302|consen  256 HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA---AV------------STKAHNSDVNVISWNRREPLLASG  320 (440)
T ss_pred             cccchhhhccCCccCceEEeeecCceEEEEEecCCCccc---ee------------EeeccCCceeeEEccCCcceeeec
Confidence            999999999999887899999999999999999873210   11            125678899999999988899999


Q ss_pred             ec-CcEEEEeccC--CCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCC----
Q 012721          346 DY-MNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGS----  417 (457)
Q Consensus       346 ~~-~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~----  417 (457)
                      +| |+++|||++.  .++++..++.|...+               +++.|+|. ...|++++.|..|.|||+....    
T Consensus       321 ~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  321 GDDGTLSIWDLRQFKSGQPVATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE  385 (440)
T ss_pred             CCCceEEEEEhhhccCCCcceeEEeccCCe---------------eEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence            87 9999999985  367889999999876               79999995 5678889999999999986431    


Q ss_pred             -----------ceeeEEecCC--CcceeeeeccCCcceec
Q 012721          418 -----------AGGITVEAGK--NENRKPILQAAPRARRS  444 (457)
Q Consensus       418 -----------~~~~~~~~~~--~~v~~~~~~p~~~~~~~  444 (457)
                                 .+.+.+..|.  ..+..|.||+.-|-.+.
T Consensus       386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv  425 (440)
T KOG0302|consen  386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV  425 (440)
T ss_pred             hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEE
Confidence                       1233555664  46899999999876654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=6.5e-23  Score=164.00  Aligned_cols=220  Identities=17%  Similarity=0.289  Sum_probs=166.5

Q ss_pred             CCccccCCceEEEEECC--CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcc
Q 012721           26 DEELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (457)
Q Consensus        26 ~~~~~h~~~V~~~~~s~--~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (457)
                      .+..+|.++|+-++|..  .|.+||+++.||.|.||.-++++-                         ........|+  
T Consensus        50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-------------------------~k~~e~~~h~--  102 (299)
T KOG1332|consen   50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-------------------------TKAYEHAAHS--  102 (299)
T ss_pred             eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch-------------------------hhhhhhhhhc--
Confidence            34567999999999987  899999999999999999877643                         2344566777  


Q ss_pred             ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       104 ~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                                ..|++|+|.|+.-|-.|++++.||.|.+.+.+....-..                               
T Consensus       103 ----------~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t-------------------------------  141 (299)
T KOG1332|consen  103 ----------ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-------------------------------  141 (299)
T ss_pred             ----------ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc-------------------------------
Confidence                      899999998888888999999999999998876411100                               


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC---C-----------CEEEEe-CCCeEEEEEcCC
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---C-----------ETFVSA-DDLRINLWNLEI  248 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~-----------~~l~~~-~d~~i~iwd~~~  248 (457)
                                                 ......|.-.|++++|.|.   |           +.|++| .|+.|+||+...
T Consensus       142 ---------------------------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~  194 (299)
T KOG1332|consen  142 ---------------------------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS  194 (299)
T ss_pred             ---------------------------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence                                       0011678889999999885   4           569998 999999999983


Q ss_pred             CcceeeeeecCCCcccCCCCceEEEEEecCC---ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec
Q 012721          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~---~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (457)
                       +. ..   +. ..+.+|.+.|..++|.|.-   ...||+++.||++.||-.+... ..-..+++             ..
T Consensus       195 -~~-w~---~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-e~wk~tll-------------~~  254 (299)
T KOG1332|consen  195 -DS-WK---LE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-EPWKKTLL-------------EE  254 (299)
T ss_pred             -cc-hh---hh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc-Cccccccc-------------cc
Confidence             31 11   11 2478999999999999964   2489999999999999876321 11111111             22


Q ss_pred             cccceEEEEEccCCCeEEEE-ecCcEEEEeccCCCC
Q 012721          326 IIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDST  360 (457)
Q Consensus       326 h~~~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~~~~  360 (457)
                      ....++.+.||..|.+|+.+ +|+.|.+|.-...++
T Consensus       255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk  290 (299)
T KOG1332|consen  255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK  290 (299)
T ss_pred             CCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence            24679999999999999976 459999998765444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=4.3e-21  Score=168.74  Aligned_cols=334  Identities=10%  Similarity=0.069  Sum_probs=237.8

Q ss_pred             CCCccccCCceEEEEECCCCCEEEEEeCCC--------eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeee
Q 012721           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGG--------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE   96 (457)
Q Consensus        25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (457)
                      ..+...|++.|.|++.+||.-.+|+|-..|        .++|||..+...                           +..
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---------------------------L~V  149 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---------------------------LHV  149 (626)
T ss_pred             cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---------------------------eee
Confidence            334566999999999999999999886555        499999765442                           222


Q ss_pred             eccCCccccccccccccCcEEEEEEEecCCCCEEEEe--eCCCeEEEEEecccceeEEEeecCCCceeeeeecccccccc
Q 012721           97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (457)
Q Consensus        97 ~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~--s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (457)
                      +...+            ..|.+++|++...|.+++..  +.+..+.+||...+......+. .++.|....|+|.+..++
T Consensus       150 ~g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~-sne~v~~a~FHPtd~nli  216 (626)
T KOG2106|consen  150 IGFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT-SNEVVFLATFHPTDPNLI  216 (626)
T ss_pred             ecccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee-ccceEEEEEeccCCCcEE
Confidence            33333            78999999876677777764  5778899999987654332221 223356677888887777


Q ss_pred             ccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCccee
Q 012721          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF  253 (457)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~  253 (457)
                      ...+              .+.+.+|+.+...-.+....+.+.....|.|++|.++|. +++| .+|.|.||+.. ..+..
T Consensus       217 it~G--------------k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~~  280 (626)
T KOG2106|consen  217 ITCG--------------KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRIS  280 (626)
T ss_pred             EEeC--------------CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceEE
Confidence            6665              568889988876555555555444557799999999986 5677 99999999987 34333


Q ss_pred             eeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc-------cccc-cccc------------
Q 012721          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SARI-LRDA------------  313 (457)
Q Consensus       254 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~-------~~~~-~~~~------------  313 (457)
                      +.       ...|.+.|.+++...+| . |++|+.|..|..||-.-.+....       .+++ .+++            
T Consensus       281 k~-------~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i  351 (626)
T KOG2106|consen  281 KQ-------VHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI  351 (626)
T ss_pred             eE-------eeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence            32       23799999999999998 5 55599999999999332221100       0011 0100            


Q ss_pred             ---ccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccce
Q 012721          314 ---AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  389 (457)
Q Consensus       314 ---~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  389 (457)
                         ...........+|....+.++.+|+...+++++ |+.+++|+ +  .++..+.......                .+
T Consensus       352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~~----------------~~  412 (626)
T KOG2106|consen  352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDPA----------------EC  412 (626)
T ss_pred             EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCce----------------eE
Confidence               000011123468889999999999988888765 59999999 2  5665554443333                48


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          390 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       390 ~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      +.|+|.| .||.|...|...+.|..+.  ...++.....+++.|+|+|+|-..+.|
T Consensus       413 ~~fhpsg-~va~Gt~~G~w~V~d~e~~--~lv~~~~d~~~ls~v~ysp~G~~lAvg  465 (626)
T KOG2106|consen  413 ADFHPSG-VVAVGTATGRWFVLDTETQ--DLVTIHTDNEQLSVVRYSPDGAFLAVG  465 (626)
T ss_pred             eeccCcc-eEEEeeccceEEEEecccc--eeEEEEecCCceEEEEEcCCCCEEEEe
Confidence            9999999 9999999999999999885  444555559999999999999888873

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=5.6e-22  Score=163.49  Aligned_cols=243  Identities=16%  Similarity=0.220  Sum_probs=178.4

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ...|.++|.+++|+.||..+++|+.|+.+++||+.+++.                            .++..|+      
T Consensus        68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~----------------------------~~v~~Hd------  113 (347)
T KOG0647|consen   68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV----------------------------SQVAAHD------  113 (347)
T ss_pred             hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe----------------------------eeeeecc------
Confidence            345899999999999999999999999999999999865                            3677888      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ++|..+.|.+...-..|++||.|++|+.||.+.......+.+                                
T Consensus       114 ------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--------------------------------  155 (347)
T KOG0647|consen  114 ------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--------------------------------  155 (347)
T ss_pred             ------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--------------------------------
Confidence                  999999998655566899999999999999987655544332                                


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                    ...++++..  ....++.+ .++.|.+|+++......+..      ....
T Consensus       156 ------------------------------PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~------~SpL  197 (347)
T KOG0647|consen  156 ------------------------------PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRI------ESPL  197 (347)
T ss_pred             ------------------------------cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhh------cCcc
Confidence                                          224555544  24467777 99999999997333222211      1123


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE-E
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-R  345 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~  345 (457)
                      .-.+.||+..++. ...+.|+..|.+.+..+..+..  ...-.|+.|......    .+.--.|++++|+|.-..|++ |
T Consensus       198 k~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~----~~~VYaVNsi~FhP~hgtlvTaG  270 (347)
T KOG0647|consen  198 KWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSV----NDDVYAVNSIAFHPVHGTLVTAG  270 (347)
T ss_pred             cceeeEEEEEecC-CceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCC----CCceEEecceEeecccceEEEec
Confidence            4568999999988 7779999999999998887532  112344443211110    001236889999998777776 5


Q ss_pred             ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721          346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       346 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                      +||++.+||-+. ...+.....|...+               ++++|+.+|.++|-+.
T Consensus       271 sDGtf~FWDkda-r~kLk~s~~~~qpI---------------tcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  271 SDGTFSFWDKDA-RTKLKTSETHPQPI---------------TCCSFNRNGSIFAYAL  312 (347)
T ss_pred             CCceEEEecchh-hhhhhccCcCCCcc---------------ceeEecCCCCEEEEEe
Confidence            789999999875 56666777777765               6899999999887553

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=2.8e-22  Score=179.63  Aligned_cols=312  Identities=15%  Similarity=0.204  Sum_probs=217.2

Q ss_pred             CCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      .....+|++.|.|++..|.|.+||+|+.||+|+||.+.++..                           +.++       
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc---------------------------vr~~-------  438 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC---------------------------VRTV-------  438 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE---------------------------EEEE-------
Confidence            344556999999999999999999999999999999998874                           2222       


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                            ...+.|.+|+|.|.++...||++-... +.+-+..-|.......  .             ...+...       
T Consensus       439 ------~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~--t-------------~ell~~~-------  489 (733)
T KOG0650|consen  439 ------QFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGP--T-------------KELLASA-------  489 (733)
T ss_pred             ------eecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcc--h-------------hhhhhcC-------
Confidence                  222569999998777766666665554 5555544331111000  0             0000000       


Q ss_pred             ccCCccccccceEEEeccCccccc-cceeeccCCCCCeeEEEeCCCCCEEEEe----CCCeEEEEEcCCCcceeeeeecC
Q 012721          185 GYHLEWTENMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMK  259 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~  259 (457)
                       + ..-..+..+..|.-......+ -+... ..|...|..+.|+..|.+|++.    ....|.|.++. ......     
T Consensus       490 -~-~~~~p~~~~~~W~~~~~~e~~~~v~~~-I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS-K~~sQ~-----  560 (733)
T KOG0650|consen  490 -P-NESEPDAAVVTWSRASLDELEKGVCIV-IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS-KRKSQS-----  560 (733)
T ss_pred             -C-CccCCcccceeechhhhhhhccceEEE-EecCCccceeeeecCCceEEEeccCCCcceEEEEecc-cccccC-----
Confidence             0 000112245566554322222 12222 5688999999999999999985    34679999987 222221     


Q ss_pred             CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g  339 (457)
                        .+....+.|.++.|+|.. .+|++++ ...|++||+....+..   +.+.+              ...|..++.+|.|
T Consensus       561 --PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvK---kL~tg--------------~kwiS~msihp~G  619 (733)
T KOG0650|consen  561 --PFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVK---KLLTG--------------SKWISSMSIHPNG  619 (733)
T ss_pred             --chhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHH---HHhcC--------------CeeeeeeeecCCC
Confidence              144556789999999998 6666665 4579999998865431   22222              3579999999999


Q ss_pred             CeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC--C-
Q 012721          340 QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG--V-  415 (457)
Q Consensus       340 ~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~--~-  415 (457)
                      ..|+.|+. +.+..+|+....++.++++.|...+               ++++|++.-.++++|+.||++.|+--.  + 
T Consensus       620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~av---------------r~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D  684 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAV---------------RSVAFHKRYPLFASGSDDGTVIVFHGMVYND  684 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhh---------------hhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence            99998885 9999999998789999999998876               799999999999999999999988521  1 


Q ss_pred             ----C-CceeeEEecCCCc----ceeeeeccCCcceec
Q 012721          416 ----G-SAGGITVEAGKNE----NRKPILQAAPRARRS  444 (457)
Q Consensus       416 ----~-~~~~~~~~~~~~~----v~~~~~~p~~~~~~~  444 (457)
                          . -.++..+.+|...    |..+.|||..|=.-+
T Consensus       685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfs  722 (733)
T KOG0650|consen  685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFS  722 (733)
T ss_pred             hhcCCceEeeeeccCceeecccceEeecccCCCceEEe
Confidence                1 1245678899766    888899999875544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=9.8e-22  Score=172.37  Aligned_cols=263  Identities=15%  Similarity=0.157  Sum_probs=185.8

Q ss_pred             CcEEEEEEEecCCCCEEEE--eeCCCeEEEEEeccc--ceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          114 EKINRVRWCAAPNGSMFIL--STNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s--~s~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                      ..+.++.|  +... .|++  .+.|..|++|.-...  +...+.......             ..|........+...| 
T Consensus        35 pg~~s~~w--~~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~-------------~~Cv~~~s~S~y~~sg-   97 (673)
T KOG4378|consen   35 PGDFSFNW--QRRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDN-------------AFCVACASQSLYEISG-   97 (673)
T ss_pred             Ccceeeec--cccc-eEEEeecCCceeEEEecccCCCCccceeeccccch-------------HHHHhhhhcceeeecc-
Confidence            45999999  4444 3444  457889999975443  222222211111             1111111111111111 


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC-C
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-T  267 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~  267 (457)
                       ..++.++|||+..    +.+..++++|...|+++.++-...+||++ ..|.|.|..+. .+.....       +... .
T Consensus        98 -G~~~~Vkiwdl~~----kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~-t~~~tt~-------f~~~sg  164 (673)
T KOG4378|consen   98 -GQSGCVKIWDLRA----KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK-TKQKTTT-------FTIDSG  164 (673)
T ss_pred             -CcCceeeehhhHH----HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc-cCccccc-------eecCCC
Confidence             1255899999962    33333448999999999999999999999 89999999998 4444333       2222 3


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE-E-E
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-S-R  345 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s-~  345 (457)
                      ..+.-+.|+|....+|.+++.+|.|.+||+.....      .+.          ....|..+...++|+|....|+ + |
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp------~~~----------~~~~HsAP~~gicfspsne~l~vsVG  228 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP------IFH----------ASEAHSAPCRGICFSPSNEALLVSVG  228 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCc------ccc----------hhhhccCCcCcceecCCccceEEEec
Confidence            45668999998756888899999999999987642      222          1356788999999999765554 4 3


Q ss_pred             ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       346 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      -|..|.+||++. .+....+......                ..++|+++|.+|+.|...|.|..||++..+.++.++.+
T Consensus       229 ~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa  291 (673)
T KOG4378|consen  229 YDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA  291 (673)
T ss_pred             ccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence            469999999985 5555555543332                58999999999999999999999999999889999999


Q ss_pred             CCCcceeeeeccCC
Q 012721          426 GKNENRKPILQAAP  439 (457)
Q Consensus       426 ~~~~v~~~~~~p~~  439 (457)
                      |...|++++|.|..
T Consensus       292 h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 HDASVTRVAFQPSP  305 (673)
T ss_pred             cccceeEEEeeecc
Confidence            99999999999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1.1e-22  Score=178.53  Aligned_cols=255  Identities=18%  Similarity=0.282  Sum_probs=195.3

Q ss_pred             hhhHHhhhcCCCCC---CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCC
Q 012721           13 EWKCSQAFGERNPD---EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (457)
Q Consensus        13 ~~~~~~~~~~~~~~---~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (457)
                      -|.++|. +.+.+.   ..++-...|+++...|||+.|++|++-.++.|||+......                      
T Consensus       444 VWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr----------------------  500 (705)
T KOG0639|consen  444 VWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR----------------------  500 (705)
T ss_pred             EeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc----------------------
Confidence            3666654 233332   23345778999999999999999999999999999765431                      


Q ss_pred             ccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccc
Q 012721           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (457)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (457)
                         ...++....            -...+++.  ++|.+..+++..||.|.|||+.+...+..                 
T Consensus       501 ---ikaeltssa------------paCyALa~--spDakvcFsccsdGnI~vwDLhnq~~Vrq-----------------  546 (705)
T KOG0639|consen  501 ---IKAELTSSA------------PACYALAI--SPDAKVCFSCCSDGNIAVWDLHNQTLVRQ-----------------  546 (705)
T ss_pred             ---hhhhcCCcc------------hhhhhhhc--CCccceeeeeccCCcEEEEEcccceeeec-----------------
Confidence               222232222            34667777  78999999999999999999998755443                 


Q ss_pred             cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC
Q 012721          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (457)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~  248 (457)
                                                                  +++|.+.+.||.+++||..|-+| -|++|+.||++.
T Consensus       547 --------------------------------------------fqGhtDGascIdis~dGtklWTGGlDntvRcWDlre  582 (705)
T KOG0639|consen  547 --------------------------------------------FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE  582 (705)
T ss_pred             --------------------------------------------ccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence                                                        27999999999999999999999 999999999994


Q ss_pred             CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  328 (457)
                       +...+.        ......|.++..+|++ .+++.|-+++.+.|......+..     .             +.-|.+
T Consensus       583 -grqlqq--------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~ky-----q-------------lhlheS  634 (705)
T KOG0639|consen  583 -GRQLQQ--------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEKY-----Q-------------LHLHES  634 (705)
T ss_pred             -hhhhhh--------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccce-----e-------------eccccc
Confidence             433322        1234789999999999 99999999999888776654211     1             234567


Q ss_pred             ceEEEEEccCCCeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc
Q 012721          329 SISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  407 (457)
Q Consensus       329 ~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  407 (457)
                      -|.++.|.+.|+++++. -|+-+..|..-. +..+...+....                |+++.+|.|.+||+||+.|..
T Consensus       635 cVLSlKFa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~Ss----------------VlsCDIS~ddkyIVTGSGdkk  697 (705)
T KOG0639|consen  635 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSS----------------VLSCDISFDDKYIVTGSGDKK  697 (705)
T ss_pred             EEEEEEecccCceeeecCchhhhhhccCcc-ccceeeccccCc----------------ceeeeeccCceEEEecCCCcc
Confidence            89999999999999975 469999998864 565655544333                278999999999999999998


Q ss_pred             EEEEec
Q 012721          408 LRIFSH  413 (457)
Q Consensus       408 i~iw~~  413 (457)
                      ..||.+
T Consensus       698 ATVYeV  703 (705)
T KOG0639|consen  698 ATVYEV  703 (705)
T ss_pred             eEEEEE
Confidence            888875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=6.8e-22  Score=180.09  Aligned_cols=231  Identities=16%  Similarity=0.282  Sum_probs=182.0

Q ss_pred             ccCCceEE-EEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           30 QDVDIVSA-IEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        30 ~h~~~V~~-~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      +|.+-|.+ +++-+ ++-.|++|+.|..|.+|...+..                           ++.+|+||+      
T Consensus        55 ~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~---------------------------P~~~LkgH~------  101 (745)
T KOG0301|consen   55 GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE---------------------------PLYTLKGHK------  101 (745)
T ss_pred             cCcceeeccceeccccCcceEeecccceEEEEecCCCC---------------------------chhhhhccc------
Confidence            36677777 88876 44569999999999999988766                           557899999      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ..|.+++.  ..++. +++||.|.++++|....-...                                     
T Consensus       102 ------snVC~ls~--~~~~~-~iSgSWD~TakvW~~~~l~~~-------------------------------------  135 (745)
T KOG0301|consen  102 ------SNVCSLSI--GEDGT-LISGSWDSTAKVWRIGELVYS-------------------------------------  135 (745)
T ss_pred             ------cceeeeec--CCcCc-eEecccccceEEecchhhhcc-------------------------------------
Confidence                  77999987  45554 999999999999987542111                                     


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                +.+|+..|+++..-|++ .+++| .|.+|++|.-   +...++       +.+|
T Consensus       136 --------------------------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~t-------f~gH  178 (745)
T KOG0301|consen  136 --------------------------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKT-------FSGH  178 (745)
T ss_pred             --------------------------cCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhh-------hccc
Confidence                                      17999999999999888 67777 9999999974   445544       7899


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      .+.|..+++-+++  .|++++.||.|++|++...       .+.+           +.+|...|+++...+++..+++++
T Consensus       179 tD~VRgL~vl~~~--~flScsNDg~Ir~w~~~ge-------~l~~-----------~~ghtn~vYsis~~~~~~~Ivs~g  238 (745)
T KOG0301|consen  179 TDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDGE-------VLLE-----------MHGHTNFVYSISMALSDGLIVSTG  238 (745)
T ss_pred             hhheeeeEEecCC--CeEeecCCceEEEEeccCc-------eeee-----------eeccceEEEEEEecCCCCeEEEec
Confidence            9999999999984  5899999999999999543       2222           256788999999777777888765


Q ss_pred             -cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721          347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       347 -~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                       |+++++|+..   .+.+.+..+...+               +++.+-++|. |++|+.||.||||....
T Consensus       239 EDrtlriW~~~---e~~q~I~lPttsi---------------Wsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  239 EDRTLRIWKKD---ECVQVITLPTTSI---------------WSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CCceEEEeecC---ceEEEEecCccce---------------EEEEEeeCCC-EEEeccCceEEEEEecc
Confidence             5999999974   6666666544333               5777777776 67899999999998763

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.1e-23  Score=192.47  Aligned_cols=233  Identities=18%  Similarity=0.301  Sum_probs=192.1

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|...|.|+..-..++.+++|+.|-.+.+|.+..-.                           .+..|.+|+        
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------------------~i~S~~~he--------   70 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------------------AITSLTGHE--------   70 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCc---------------------------hhheeeccC--------
Confidence            489999999997788999999999999999976443                           345688999        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          .+|.++.|  +.+..+|++|+.+|+|++||++..+....                                     
T Consensus        71 ----spIeSl~f--~~~E~LlaagsasgtiK~wDleeAk~vrt-------------------------------------  107 (825)
T KOG0267|consen   71 ----SPIESLTF--DTSERLLAAGSASGTIKVWDLEEAKIVRT-------------------------------------  107 (825)
T ss_pred             ----Ccceeeec--CcchhhhcccccCCceeeeehhhhhhhhh-------------------------------------
Confidence                89999999  67777899999999999999997754432                                     


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                              +.+|...+.++.|+|-+.+++.| .|..+++||.+ ...+...       +.+|..
T Consensus       108 ------------------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~-------~~s~~~  155 (825)
T KOG0267|consen  108 ------------------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHT-------YKSHTR  155 (825)
T ss_pred             ------------------------hhccccCcceeeeccceEEeccccccccceehhhh-ccCceee-------ecCCcc
Confidence                                    26899999999999999999999 99999999999 4445544       577999


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~  347 (457)
                      .+.++.|+|+| .+++.+++|.++++||...++..    ..             |..|.+.+..+.|+|..-++++|+ |
T Consensus       156 vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~----~e-------------f~~~e~~v~sle~hp~e~Lla~Gs~d  217 (825)
T KOG0267|consen  156 VVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLS----KE-------------FKSHEGKVQSLEFHPLEVLLAPGSSD  217 (825)
T ss_pred             eeEEEeecCCC-ceeeccCCcceeeeecccccccc----cc-------------cccccccccccccCchhhhhccCCCC
Confidence            99999999999 99999999999999999988543    22             445778999999999998888886 5


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                      +++++||+++ ...+........               +|.+..|+|++..+++|..+.
T Consensus       218 ~tv~f~dlet-fe~I~s~~~~~~---------------~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  218 RTVRFWDLET-FEVISSGKPETD---------------GVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ceeeeeccce-eEEeeccCCccC---------------CceeeeecCCceeeecCchhh
Confidence            9999999985 344443333222               236899999999999887754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=1.3e-20  Score=165.67  Aligned_cols=271  Identities=14%  Similarity=0.254  Sum_probs=188.6

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ..-|.|++|.++|+ ++||+++|.|.||+..+.+                           ...+...|+          
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~---------------------------~~k~~~aH~----------  287 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR---------------------------ISKQVHAHD----------  287 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce---------------------------EEeEeeecC----------
Confidence            47899999999987 5699999999999986544                           233444787          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecC-CCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                        +.|.+++.+  .+| .|++|+.|+.|..|| .+.+..+..+.+. ...++.++-...+  ++....            
T Consensus       288 --ggv~~L~~l--r~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt------------  347 (626)
T KOG2106|consen  288 --GGVFSLCML--RDG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT------------  347 (626)
T ss_pred             --CceEEEEEe--cCc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec------------
Confidence              999999984  677 566799999999999 3222222222111 1112211111000  111000            


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                        .+.|..-.++..    ...+. .+|......++.+|+.+.++++ .|+.+++|+ + .+.....         .-.++
T Consensus       348 --rN~iL~Gt~~~~----f~~~v-~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~---------~~~d~  409 (626)
T KOG2106|consen  348 --RNFILQGTLENG----FTLTV-QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTK---------IIEDP  409 (626)
T ss_pred             --cceEEEeeecCC----ceEEE-EecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEE---------EecCc
Confidence              111222222211    11112 6899999999999999999999 999999999 3 2322221         13367


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~  348 (457)
                      +.|+.|+|.|  .+|.|...|...+.|.++..+.       ..|.          . +.+++++.|+|+|.+||.|+. +
T Consensus       410 ~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv-------~~~~----------d-~~~ls~v~ysp~G~~lAvgs~d~  469 (626)
T KOG2106|consen  410 AECADFHPSG--VVAVGTATGRWFVLDTETQDLV-------TIHT----------D-NEQLSVVRYSPDGAFLAVGSHDN  469 (626)
T ss_pred             eeEeeccCcc--eEEEeeccceEEEEecccceeE-------EEEe----------c-CCceEEEEEcCCCCEEEEecCCC
Confidence            8999999997  8999999999999999885433       2111          1 468999999999999999985 9


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      .|++|.+..++..+.....+.+.              .++.+.||+|+++|.+-+-|-.|..|.
T Consensus       470 ~iyiy~Vs~~g~~y~r~~k~~gs--------------~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  470 HIYIYRVSANGRKYSRVGKCSGS--------------PITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             eEEEEEECCCCcEEEEeeeecCc--------------eeEEeeecCCCceEEeccCceEEEEEc
Confidence            99999998767776666555441              237999999999999999999999993

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=6.2e-21  Score=157.95  Aligned_cols=244  Identities=18%  Similarity=0.200  Sum_probs=179.0

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ..+.|..++.+++|.+ ...+++|+.||.|+.+|+.++...                            .+..|.     
T Consensus        49 ~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~----------------------------~igth~-----   94 (323)
T KOG1036|consen   49 LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED----------------------------QIGTHD-----   94 (323)
T ss_pred             hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce----------------------------eeccCC-----
Confidence            3456999999999997 457889999999999999988753                            566777     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ++|.+|.++  +....+++|+.|++|++||.........                                  
T Consensus        95 -------~~i~ci~~~--~~~~~vIsgsWD~~ik~wD~R~~~~~~~----------------------------------  131 (323)
T KOG1036|consen   95 -------EGIRCIEYS--YEVGCVISGSWDKTIKFWDPRNKVVVGT----------------------------------  131 (323)
T ss_pred             -------CceEEEEee--ccCCeEEEcccCccEEEEeccccccccc----------------------------------
Confidence                   899999995  5556899999999999999886322111                                  


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                  ......|.++...  ++.|+.| .|..+.+||++......+.-      -..
T Consensus       132 ----------------------------~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~r------eS~  175 (323)
T KOG1036|consen  132 ----------------------------FDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRR------ESS  175 (323)
T ss_pred             ----------------------------cccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhc------ccc
Confidence                                        1233478888775  6678887 99999999999555444321      123


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ....+.|+++.|++ .=+++++.||.|.+=.+............|+.|.......    .---+|++++|+|--..+|+|
T Consensus       176 lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~----~~~yPVNai~Fhp~~~tfaTg  250 (323)
T KOG1036|consen  176 LKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT----EIIYPVNAIAFHPIHGTFATG  250 (323)
T ss_pred             ceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc----eEEEEeceeEeccccceEEec
Confidence            34678999999977 6688899999988765555422222223444432222111    112479999999998899987


Q ss_pred             e-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721          346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (457)
Q Consensus       346 ~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  404 (457)
                      + ||.|.+||+.. .+.+..+...+..+               -+++|+.||..||.++.
T Consensus       251 GsDG~V~~Wd~~~-rKrl~q~~~~~~SI---------------~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  251 GSDGIVNIWDLFN-RKRLKQLAKYETSI---------------SSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CCCceEEEccCcc-hhhhhhccCCCCce---------------EEEEeccCCCeEEEEec
Confidence            5 69999999975 67777776654443               48999999999999875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=2.7e-21  Score=176.16  Aligned_cols=328  Identities=15%  Similarity=0.154  Sum_probs=222.6

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccce---eeeeccCCccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY---KTEFQSHEPEF  104 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~~  104 (457)
                      ..+|.+.|+++.|+|.+..|.+++.|.++.||..++..-                       .+..   +....|..   
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG-----------------------iWv~~vRlGe~gg~a---  316 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTG-----------------------IWVDVVRLGEVGGSA---  316 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccc-----------------------eEEEEEEeecccccc---
Confidence            347999999999999998899999999999999765421                       0111   11222222   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc-cceeEE-EeecCCCceeeeeeccccccccccCCCCCc
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                               ..-....|  +++++.+++-+.-|..++|...+ ...... ........|.++.|.+....++......+.
T Consensus       317 ---------~GF~g~lw--~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTT  385 (764)
T KOG1063|consen  317 ---------GGFWGGLW--SPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTT  385 (764)
T ss_pred             ---------cceeeEEE--cCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccce
Confidence                     56788888  68888999999999999999332 222222 222344568888888665555544442222


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC------------
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS------------  249 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~------------  249 (457)
                      .+++...    .... |-        .+... +-|.-.++|+++-+....+++| +.+.+++|+....            
T Consensus       386 RlFa~wg----~q~~-wH--------EiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~  451 (764)
T KOG1063|consen  386 RLFARWG----RQQE-WH--------EIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKC  451 (764)
T ss_pred             eeecccc----cccc-ee--------eeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCcc
Confidence            2222110    0000 11        11111 5577889999998766677888 8889999976420            


Q ss_pred             -------------------------------cc---eeee--------eecCC--------------CcccCCCCceEEE
Q 012721          250 -------------------------------DQ---CFNI--------VDMKP--------------SNMDDLTEVITSA  273 (457)
Q Consensus       250 -------------------------------~~---~~~~--------~~~~~--------------~~~~~~~~~i~~v  273 (457)
                                                     +.   ..++        +..+|              +++-+|...|+++
T Consensus       452 ~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l  531 (764)
T KOG1063|consen  452 FKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYAL  531 (764)
T ss_pred             ccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEE
Confidence                                           00   0000        00011              2356899999999


Q ss_pred             EEecCCccEEEEEccC-----CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c
Q 012721          274 EFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (457)
Q Consensus       274 ~~~p~~~~~l~~~~~d-----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~  347 (457)
                      +.+|++ +++|+++..     -.|++|+..+-...                 ..+.+|.-.|+.++|||||+||++.+ |
T Consensus       532 ~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~-----------------~~L~~HsLTVT~l~FSpdg~~LLsvsRD  593 (764)
T KOG1063|consen  532 AISPTG-NLIASACKSSLKEHAVIRLWNTANWLQV-----------------QELEGHSLTVTRLAFSPDGRYLLSVSRD  593 (764)
T ss_pred             EecCCC-CEEeehhhhCCccceEEEEEeccchhhh-----------------heecccceEEEEEEECCCCcEEEEeecC
Confidence            999999 999999854     35899998765321                 12466788999999999999999887 5


Q ss_pred             CcEEEEeccCCCCc---eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC--Cceee-
Q 012721          348 MNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG--SAGGI-  421 (457)
Q Consensus       348 ~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~--~~~~~-  421 (457)
                      .++.+|........   ....+.|...+               .++.|+|++.+++|+|.|.+|.+|.....  +.... 
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRII---------------WdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~  658 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRII---------------WDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF  658 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEE---------------EEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence            99999988532222   22355666654               79999999999999999999999999877  22222 


Q ss_pred             EEecCCCcceeeeeccCC
Q 012721          422 TVEAGKNENRKPILQAAP  439 (457)
Q Consensus       422 ~~~~~~~~v~~~~~~p~~  439 (457)
                      ....+..+|+.+++.|--
T Consensus       659 a~~~~~~aVTAv~~~~~~  676 (764)
T KOG1063|consen  659 ACLKFSLAVTAVAYLPVD  676 (764)
T ss_pred             chhccCCceeeEEeeccc
Confidence            455788999999998764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=9.2e-22  Score=177.60  Aligned_cols=283  Identities=15%  Similarity=0.148  Sum_probs=187.9

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ..+.|...|..+.|.|....|++++.|.++++||+.+.+..                         -...+.||.     
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-------------------------G~~~~~GH~-----  144 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-------------------------GGRLNLGHT-----  144 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-------------------------cceeecccc-----
Confidence            45569999999999997788999999999999999987752                         122477888     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ..|.+++|.| .+...|++|+.||.|.|||++.........+      +                        
T Consensus       145 -------~SvkS~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~------~------------------------  186 (720)
T KOG0321|consen  145 -------GSVKSECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEF------D------------------------  186 (720)
T ss_pred             -------cccchhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHH------h------------------------
Confidence                   8999999975 4556899999999999999876532111000      0                        


Q ss_pred             CCccccccceEEEeccCc------cccccceeeccCCCCCeeE---EEeCCCCCEEEEe--CCCeEEEEEcCCCcceeee
Q 012721          187 HLEWTENMATKIANVGNS------VHARCQKVYPHAHDFNINS---ISNNSDCETFVSA--DDLRINLWNLEISDQCFNI  255 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~h~~~v~~---~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~  255 (457)
                               .+++...+.      ...+.++.- ..+...|.+   +.+..|...||++  .|+.|++||++......+.
T Consensus       187 ---------~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~  256 (720)
T KOG0321|consen  187 ---------NRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ  256 (720)
T ss_pred             ---------hhhhccccCCCCCCchhhcccccc-ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc
Confidence                     000000000      000111111 344444444   4445577888886  5999999999954333222


Q ss_pred             eecCCCcccCC---CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721          256 VDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (457)
Q Consensus       256 ~~~~~~~~~~~---~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  332 (457)
                      -......+.-|   ...+.++.....| .+|.+.+.|+.|.+||+..-...  ....+.++..           ...-..
T Consensus       257 ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~s--P~~~~sg~~~-----------~sf~vk  322 (720)
T KOG0321|consen  257 EPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSIS--PVAEFSGKLN-----------SSFYVK  322 (720)
T ss_pred             CCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcC--chhhccCccc-----------ceeeee
Confidence            11111223333   4567888888888 66666666999999999875321  1122222000           011223


Q ss_pred             EEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEE
Q 012721          333 IKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRI  410 (457)
Q Consensus       333 ~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~i  410 (457)
                      -..+|++.+|++|+ +...++|.+.........+.+|.-.+               ++++|.|. -.-++++++|.+++|
T Consensus       323 s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV---------------t~V~w~pS~~t~v~TcSdD~~~ki  387 (720)
T KOG0321|consen  323 SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV---------------TTVRWLPSATTPVATCSDDFRVKI  387 (720)
T ss_pred             eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE---------------EEEeeccccCCCceeeccCcceEE
Confidence            35689999999997 59999999987677778888888765               78999874 334667799999999


Q ss_pred             EecCCC
Q 012721          411 FSHGVG  416 (457)
Q Consensus       411 w~~~~~  416 (457)
                      |++.++
T Consensus       388 W~l~~~  393 (720)
T KOG0321|consen  388 WRLSNG  393 (720)
T ss_pred             EeccCc
Confidence            999876

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=8.7e-22  Score=164.18  Aligned_cols=268  Identities=15%  Similarity=0.213  Sum_probs=186.7

Q ss_pred             ccCCceEEEEECCC----CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        30 ~h~~~V~~~~~s~~----~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      .|.+..+.++|+-+    ..+||.|+.-|.|+|.|+.+++                           +...+.+|.    
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~---------------------------~~~~~~ghG----  135 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ---------------------------CSKNYRGHG----  135 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh---------------------------hccceeccC----
Confidence            36778888999764    3589999999999999998776                           456788898    


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                              ..|+.+.++| .+.++++++|.|.+|++|+++++.++.++..-                             
T Consensus       136 --------~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~-----------------------------  177 (385)
T KOG1034|consen  136 --------GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV-----------------------------  177 (385)
T ss_pred             --------ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEeccc-----------------------------
Confidence                    8899999975 44579999999999999999999887665321                             


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeee------c
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD------M  258 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~------~  258 (457)
                                                   .+|.+.|.++.|+++|.+|++| .|.+|++|++.. .+....++      .
T Consensus       178 -----------------------------egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~-~~f~~~lE~s~~~~~  227 (385)
T KOG1034|consen  178 -----------------------------EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV-KEFKNKLELSITYSP  227 (385)
T ss_pred             -----------------------------ccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh-hHHhhhhhhhcccCC
Confidence                                         6899999999999999999999 999999999982 21110000      0


Q ss_pred             CC---------------CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccce
Q 012721          259 KP---------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (457)
Q Consensus       259 ~~---------------~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (457)
                      ++               .+-.-|...|-|+.|-  | +++++=+-++.|..|-...-+....  .+... .........+
T Consensus       228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~--~vkp~-es~~Ti~~~~  301 (385)
T KOG1034|consen  228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIH--NVKPP-ESATTILGEF  301 (385)
T ss_pred             CCccCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhh--ccCCC-ccceeeeeEe
Confidence            00               0123466667777765  3 6788888899999998732211100  00000 0000111122


Q ss_pred             eccccceEEEEE--ccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEE
Q 012721          324 TEIIASISDIKF--ANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (457)
Q Consensus       324 ~~h~~~v~~~~~--s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  400 (457)
                      .-....|+.+.|  .|-++.||.|.. |.|++||++....+..+-..|.....            .|...+|+.|+.+|+
T Consensus       302 ~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~------------tVRQ~sfS~dgs~lv  369 (385)
T KOG1034|consen  302 DYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGS------------TVRQTSFSRDGSILV  369 (385)
T ss_pred             ccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccc------------eeeeeeecccCcEEE
Confidence            333456777665  466899999987 99999999852222222112222111            236899999999999


Q ss_pred             EEeCCCcEEEEecC
Q 012721          401 TGSYSNLLRIFSHG  414 (457)
Q Consensus       401 s~~~dg~i~iw~~~  414 (457)
                      ..++|++|.-||..
T Consensus       370 ~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  370 LVCDDGTVWRWDRV  383 (385)
T ss_pred             EEeCCCcEEEEEee
Confidence            99999999999864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2.3e-21  Score=167.94  Aligned_cols=267  Identities=16%  Similarity=0.208  Sum_probs=181.9

Q ss_pred             CceEEEEECC-------CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           33 DIVSAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        33 ~~V~~~~~s~-------~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ....|++|..       .|+|+|.|+.|..|-|||++-.....+.-+    |.......  .....+.-..-.+|+    
T Consensus       174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~----LGs~~sk~--~~k~~k~~~~~~gHT----  243 (463)
T KOG0270|consen  174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVT----LGSKASKK--KKKKGKRSNSASGHT----  243 (463)
T ss_pred             CcchhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccccccee----echhhhhh--hhhhcccccccccch----
Confidence            3446777743       368999999999999999874433211000    00000000  000000001123455    


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                              ..|.+++|. ....+.|++||.|.+|++||+.++++...+                                
T Consensus       244 --------davl~Ls~n-~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~--------------------------------  282 (463)
T KOG0270|consen  244 --------DAVLALSWN-RNFRNVLASGSADKTVKLWDVDTGKPKSSI--------------------------------  282 (463)
T ss_pred             --------HHHHHHHhc-cccceeEEecCCCceEEEEEcCCCCcceeh--------------------------------
Confidence                    888999985 234568999999999999999999876553                                


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                                                   ..|...|.+++|+| ....|++| .|++|.+.|.+.....-..+       
T Consensus       283 -----------------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-------  326 (463)
T KOG0270|consen  283 -----------------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-------  326 (463)
T ss_pred             -----------------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-------
Confidence                                         46888999999998 56788889 99999999999433332222       


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe-E
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-L  342 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l  342 (457)
                       .-.+.|-.++|+|.....++++..||+|+-+|+|+...     .+|.           +..|.++|+++++++.-.. +
T Consensus       327 -k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt-----------~~AHd~~ISgl~~n~~~p~~l  389 (463)
T KOG0270|consen  327 -KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWT-----------LKAHDDEISGLSVNIQTPGLL  389 (463)
T ss_pred             -EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeE-----------EEeccCCcceEEecCCCCcce
Confidence             13367899999999878899999999999999998631     2333           3678899999999987554 4


Q ss_pred             EEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCCC
Q 012721          343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       343 ~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~  417 (457)
                      ++++ ++.|++|++..  ..-.....|.....++            .++++.|+- -+++.|+..+.++|||+.+..
T Consensus       390 ~t~s~d~~Vklw~~~~--~~~~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  390 STASTDKVVKLWKFDV--DSPKSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             eeccccceEEEEeecC--CCCcccccccccccce------------eecccCCCcceEEEecCccceEEEeecccCh
Confidence            5554 59999999963  2222333344333222            356677764 467788888899999998873

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.2e-21  Score=162.62  Aligned_cols=195  Identities=20%  Similarity=0.313  Sum_probs=147.1

Q ss_pred             CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEec
Q 012721           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (457)
Q Consensus        45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s  124 (457)
                      ..+|++...|.|+|||..+++                           .+..++++.            ..++.++|...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~---------------------------~l~~fk~~~------------~~~N~vrf~~~   81 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ---------------------------LLEEFKGPP------------ATTNGVRFISC   81 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh---------------------------hhheecCCC------------CcccceEEecC
Confidence            578999999999999999876                           346788888            77899999732


Q ss_pred             CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCc
Q 012721          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (457)
Q Consensus       125 ~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  204 (457)
                      .....+.+|+.||+|++||++.......+..                                                 
T Consensus        82 ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~-------------------------------------------------  112 (376)
T KOG1188|consen   82 DSPHGVISCSSDGTVRLWDIRSQAESARISW-------------------------------------------------  112 (376)
T ss_pred             CCCCeeEEeccCCeEEEEEeecchhhhheec-------------------------------------------------
Confidence            2456788999999999999987654433221                                                 


Q ss_pred             cccccceeeccCC-CCCeeEEEeCCCCCEEEEe-----CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC
Q 012721          205 VHARCQKVYPHAH-DFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  278 (457)
Q Consensus       205 ~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~  278 (457)
                                ..+ ..+..|++.+-+++.+++|     .|-.|.+||++...+.+..+      .+.|...|+++.|+|.
T Consensus       113 ----------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~  176 (376)
T KOG1188|consen  113 ----------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPS  176 (376)
T ss_pred             ----------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCC
Confidence                      222 2467788887778888886     36789999999655545443      5789999999999999


Q ss_pred             CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEEe-cCcEEEEecc
Q 012721          279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIR  356 (457)
Q Consensus       279 ~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~-~~~i~~wd~~  356 (457)
                      .+++|++||.||.|.|||+......+....++.              |.+.|.++.|..++ +.|.+-+ ..+..+|+++
T Consensus       177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN--------------~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN--------------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             CCCeEEeecccceEEeeecCCCcchhhHHHhhc--------------ccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence            999999999999999999987644333233333              35678999998877 2244433 4888888876


Q ss_pred             C
Q 012721          357 M  357 (457)
Q Consensus       357 ~  357 (457)
                      .
T Consensus       243 ~  243 (376)
T KOG1188|consen  243 D  243 (376)
T ss_pred             C
Confidence            4

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.2e-22  Score=193.38  Aligned_cols=193  Identities=18%  Similarity=0.160  Sum_probs=151.3

Q ss_pred             cCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeE
Q 012721          215 HAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (457)
Q Consensus       215 ~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i  292 (457)
                      ..|.+.|..+.|++.+. +||+| .||.|.|||++........      .-....+.|.+++|+..-...|++++.+|.+
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~  186 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPSEIKCLSWNRKVSHILASGSPSGRA  186 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence            67999999999999655 89999 9999999999943333221      0122457899999998765799999999999


Q ss_pred             EEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC--CeEEE-Eec--CcEEEEeccCCCCceeEeee
Q 012721          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLS-RDY--MNLKLWDIRMDSTPVATFKI  367 (457)
Q Consensus       293 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s-~~~--~~i~~wd~~~~~~~~~~~~~  367 (457)
                      .|||++..+.+.    .+..   .+        -...+..+.|+|+.  +++++ .+|  -.|.+||+|....+++.+++
T Consensus       187 ~iWDlr~~~pii----~ls~---~~--------~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~  251 (1049)
T KOG0307|consen  187 VIWDLRKKKPII----KLSD---TP--------GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG  251 (1049)
T ss_pred             eeccccCCCccc----cccc---CC--------CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc
Confidence            999999875432    1111   00        01347899999986  33333 344  78999999987889999999


Q ss_pred             ccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      |...+               +++.|++.+ .+|++++.|++|.+|+.+++ +.+..+......+..|.|.|..|....
T Consensus       252 H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~pr~P~~~A  313 (1049)
T KOG0307|consen  252 HQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWCPRNPSVMA  313 (1049)
T ss_pred             cccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeeeeecCCCcchhh
Confidence            98765               799999865 89999999999999999999 677788888899999999999885443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.4e-19  Score=162.31  Aligned_cols=347  Identities=16%  Similarity=0.132  Sum_probs=222.1

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      ..+.|++++.+|.+..++.|+.||.+.+++...++..                         +...|...+         
T Consensus       109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~-------------------------~~r~l~rq~---------  154 (691)
T KOG2048|consen  109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT-------------------------YKRSLMRQK---------  154 (691)
T ss_pred             CCcceeEEEeCCccceEEeecCCceEEEEecCCceEE-------------------------EEeeccccc---------
Confidence            4679999999999999999999997777776665542                         334444444         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCc---eeeeeeccccccccccCCCCCceeccC
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF---VSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                         +.|.+++|  ++++..+++|+.||.|++||...+........+...-   -..+.|              ++.++.+
T Consensus       155 ---sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW--------------Sv~~Lrd  215 (691)
T KOG2048|consen  155 ---SRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW--------------SVLFLRD  215 (691)
T ss_pred             ---ceEEEEEe--cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE--------------EEEEeec
Confidence               88999999  7899899999999999999999887666443322110   001111              1233333


Q ss_pred             Ccc---ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          188 LEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       188 ~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                      +..   ++.+.+++||...-+   .++.+ ..|...|.|++.++++..++++ .|+.|..|.....+.....  .  ...
T Consensus       216 ~tI~sgDS~G~V~FWd~~~gT---LiqS~-~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~--~--~~r  287 (691)
T KOG2048|consen  216 STIASGDSAGTVTFWDSIFGT---LIQSH-SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI--N--SRR  287 (691)
T ss_pred             CcEEEecCCceEEEEcccCcc---hhhhh-hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee--e--ccc
Confidence            333   345689999987543   33333 6789999999999998888888 9999999988744332211  1  224


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc-------------------ccccccccccc--------
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------------------SARILRDAAES--------  316 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~-------------------~~~~~~~~~~~--------  316 (457)
                      ..|...+.+++..++   .+++|+.|.++.+--.+.-+....                   ....+..|...        
T Consensus       288 ~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~  364 (691)
T KOG2048|consen  288 DLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVI  364 (691)
T ss_pred             cCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcc
Confidence            678888999998875   688899998887755443111000                   00001010000        


Q ss_pred             -------cCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeE-------------------------
Q 012721          317 -------HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT-------------------------  364 (457)
Q Consensus       317 -------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~-------------------------  364 (457)
                             ...-..+..-...|.+.+.||+|++|+.+.-..+++|.+.... .+..                         
T Consensus       365 ~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~  443 (691)
T KOG2048|consen  365 LQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKL  443 (691)
T ss_pred             cccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceE
Confidence                   0000112223456889999999999998876667777665311 1100                         


Q ss_pred             ------------eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCccee
Q 012721          365 ------------FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  432 (457)
Q Consensus       365 ------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~  432 (457)
                                  +.........+..+-...+...+..+..||+|+|||+.+.+|.|.+|++.+++ .......-...++.
T Consensus       444 ~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~-~~~l~~rln~~vTa  522 (691)
T KOG2048|consen  444 FLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE-SHLLKVRLNIDVTA  522 (691)
T ss_pred             EEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce-eecchhccCcceee
Confidence                        00000000000011112233345789999999999999999999999999983 33333334488999


Q ss_pred             eeeccCCccee
Q 012721          433 PILQAAPRARR  443 (457)
Q Consensus       433 ~~~~p~~~~~~  443 (457)
                      ++++|.....+
T Consensus       523 ~~~~~~~~~~l  533 (691)
T KOG2048|consen  523 AAFSPFVRNRL  533 (691)
T ss_pred             eeccccccCcE
Confidence            99997655443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.88  E-value=5.3e-21  Score=172.64  Aligned_cols=151  Identities=17%  Similarity=0.208  Sum_probs=116.4

Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEe
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~  346 (457)
                      ..|+.+.|+|.....|++++.||.|++|.+..+.+..          ........+..|...|+++.|+|- ...|++++
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e----------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as  697 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE----------NEMTPEKILTIHGEKITSLRFHPLAADVLAVAS  697 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCc----------ccCCcceeeecccceEEEEEecchhhhHhhhhh
Confidence            3467888999777899999999999999998764331          111223457889999999999995 45667776


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      . -+|++||+.. .+....+.+|.+.+               +.++|||||+.+|+.+.||+|++|+-++++..+..-.+
T Consensus       698 yd~Ti~lWDl~~-~~~~~~l~gHtdqI---------------f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g  761 (1012)
T KOG1445|consen  698 YDSTIELWDLAN-AKLYSRLVGHTDQI---------------FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG  761 (1012)
T ss_pred             ccceeeeeehhh-hhhhheeccCcCce---------------eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC
Confidence            4 9999999986 88888999999865               79999999999999999999999999988666554443


Q ss_pred             CCC-cceeeeeccCCcceec
Q 012721          426 GKN-ENRKPILQAAPRARRS  444 (457)
Q Consensus       426 ~~~-~v~~~~~~p~~~~~~~  444 (457)
                      -.+ .--.+.|.-+++-...
T Consensus       762 pvgtRgARi~wacdgr~viv  781 (1012)
T KOG1445|consen  762 PVGTRGARILWACDGRIVIV  781 (1012)
T ss_pred             CccCcceeEEEEecCcEEEE
Confidence            322 2234567777665443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=2.9e-21  Score=169.45  Aligned_cols=223  Identities=15%  Similarity=0.194  Sum_probs=177.1

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      +.-.|++......|+++|+..+.|+|||+....                           +.+.+++|.           
T Consensus        80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl---------------------------~hr~lkdh~-----------  121 (673)
T KOG4378|consen   80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKL---------------------------IHRFLKDHQ-----------  121 (673)
T ss_pred             chHHHHhhhhcceeeeccCcCceeeehhhHHHH---------------------------HhhhccCCc-----------
Confidence            344566666666899999999999999998443                           456788898           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                       ..|++|.|  +..+.+||+++..|.|.|..+.++.....+.                                      
T Consensus       122 -stvt~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~--------------------------------------  160 (673)
T KOG4378|consen  122 -STVTYVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFT--------------------------------------  160 (673)
T ss_pred             -ceeEEEEe--cCCcceeEEeccCCcEEEEecccCcccccee--------------------------------------
Confidence             88999999  6788899999999999999988875443322                                      


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                            .+....|.-+.|+|..+.+++ + ++|.|.+||+. ....+..      ..+.|..+.
T Consensus       161 ----------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~-g~sp~~~------~~~~HsAP~  211 (673)
T KOG4378|consen  161 ----------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ-GMSPIFH------ASEAHSAPC  211 (673)
T ss_pred             ----------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEecc-CCCcccc------hhhhccCCc
Confidence                                  233445678999997776655 5 99999999998 3333322      257899999


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~  349 (457)
                      ..|+|+|..+.+|++.+.|..|.+||++..+...   ++..               ..+.+.++|+++|.+|++|+. |.
T Consensus       212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~---~l~y---------------~~Plstvaf~~~G~~L~aG~s~G~  273 (673)
T KOG4378|consen  212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTD---RLTY---------------SHPLSTVAFSECGTYLCAGNSKGE  273 (673)
T ss_pred             CcceecCCccceEEEecccceEEEeecccccccc---eeee---------------cCCcceeeecCCceEEEeecCCce
Confidence            9999999887899999999999999999765432   1111               257899999999999999986 99


Q ss_pred             EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~  396 (457)
                      |..||++....++..+..|...+               ++++|-|..
T Consensus       274 ~i~YD~R~~k~Pv~v~sah~~sV---------------t~vafq~s~  305 (673)
T KOG4378|consen  274 LIAYDMRSTKAPVAVRSAHDASV---------------TRVAFQPSP  305 (673)
T ss_pred             EEEEecccCCCCceEeeecccce---------------eEEEeeecc
Confidence            99999998788999999999875               688887654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=2.6e-20  Score=159.73  Aligned_cols=326  Identities=15%  Similarity=0.211  Sum_probs=209.6

Q ss_pred             CCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        32 ~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      ..+|+++.|.++.. .||||+.|..|+||.+...+..            ++      .+.-++...|..|.         
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------------~~------~~~V~y~s~Ls~H~---------   65 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------------GG------DMKVEYLSSLSRHT---------   65 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCC------------CC------ceeEEEeecccCCc---------
Confidence            45899999999776 9999999999999999876532            00      01345677788888         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ..|+++.|  +++|++|++|+.+|.|.+|....-...   .....                                
T Consensus        66 ---~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e--------------------------------  105 (434)
T KOG1009|consen   66 ---RAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DADTE--------------------------------  105 (434)
T ss_pred             ---ceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cccch--------------------------------
Confidence               88999999  799999999999999999987641110   00000                                


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                .+.......++..+.+|...|+.++|+|++.+++++ .|+.+++||+. .++...+       +.+|...
T Consensus       106 ----------~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~-------~~dh~~y  167 (434)
T KOG1009|consen  106 ----------ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAI-------LDDHEHY  167 (434)
T ss_pred             ----------hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEee-------ccccccc
Confidence                      000000112222337899999999999999999999 99999999999 6777765       6789999


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc-ccccccc--cccCcc-ccee--ccccceEEEEEccCCCeEE
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAA--ESHGSK-SFFT--EIIASISDIKFANDGQHLL  343 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~--~~~~~~-~~~~--~h~~~v~~~~~s~~g~~l~  343 (457)
                      +..++|.|-+ +++++-+.|...+.+.+...+...... .++....  +..... ..+.  ....-...++|+|+|.+|+
T Consensus       168 vqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv  246 (434)
T KOG1009|consen  168 VQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV  246 (434)
T ss_pred             cceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence            9999999998 999999999877777776544321111 0111100  000000 0010  0113356789999999998


Q ss_pred             EEe-----cC-----cEEEEeccCCCCceeEeeeccccc--cccccccCCCCccccceEEE-cCCCcEEEEEeCCCcEEE
Q 012721          344 SRD-----YM-----NLKLWDIRMDSTPVATFKIHEHLR--PKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRI  410 (457)
Q Consensus       344 s~~-----~~-----~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~-s~d~~~l~s~~~dg~i~i  410 (457)
                      +..     .+     ..++++-..-.++...+.......  -..|+.|..-+.+......| -|-+..+|.++. ..|++
T Consensus       247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyv  325 (434)
T KOG1009|consen  247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYV  325 (434)
T ss_pred             cccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEE
Confidence            642     12     334554332234444433322211  01111111111100011111 133444555665 67999


Q ss_pred             EecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       411 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ||.++-+.....-.-|-.+++.++|+++|...+.
T Consensus       326 ydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~v  359 (434)
T KOG1009|consen  326 YDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLV  359 (434)
T ss_pred             eccccccceEEEeeeeeeeecceeecCCCcEEEE
Confidence            9999986777778899999999999999877665

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=1.2e-20  Score=155.08  Aligned_cols=231  Identities=16%  Similarity=0.229  Sum_probs=163.2

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      +.|+++..-+ ..|.++++|+.||.|.+||+++-.......+-. ..+|.++                            
T Consensus        44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~-k~~c~v~----------------------------   93 (397)
T KOG4283|consen   44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIA-KHKCIVA----------------------------   93 (397)
T ss_pred             Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhcccee-heeeecc----------------------------
Confidence            8899999963 578999999999999999998643111000000 0000000                            


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                                       +....+|.-.|.++.|-| |...+.++ .|.++++||.+ ..+....+.+        .+.|+
T Consensus        94 -----------------~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtn-TlQ~a~~F~m--------e~~VY  147 (397)
T KOG4283|consen   94 -----------------KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTN-TLQEAVDFKM--------EGKVY  147 (397)
T ss_pred             -----------------ccCCccceeeeeeeEEeeecCceeecccccceEEEeecc-cceeeEEeec--------Cceee
Confidence                             001157888999999998 55566777 99999999999 4444444433        36677


Q ss_pred             EEEEecCCc--cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE-EEe-c
Q 012721          272 SAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-Y  347 (457)
Q Consensus       272 ~v~~~p~~~--~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~-~  347 (457)
                      +-+++|-..  .++|+|..|-.|++-|+.++...                 .++.+|...|.++.|+|..++++ +|+ |
T Consensus       148 shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-----------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaD  210 (397)
T KOG4283|consen  148 SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-----------------HTLSGHRDGVLAVEWSPSSEWVLATGSAD  210 (397)
T ss_pred             hhhcChhhhcceEEEEecCCCcEEEEeccCCcce-----------------eeeccccCceEEEEeccCceeEEEecCCC
Confidence            777777431  58899999999999999998533                 23567899999999999988876 555 5


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  418 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~  418 (457)
                      |.|++||++....+...+..|....+..-. -.+..-..+..++|+.|+.++++.+.|.++++|+..+|+.
T Consensus       211 g~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  211 GAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             ceEEEEEeecccceeEEeecccCccCcccc-ccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence            999999998655677777766643211110 0111122347899999999999999999999999998853

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=2.2e-20  Score=155.89  Aligned_cols=308  Identities=15%  Similarity=0.200  Sum_probs=203.2

Q ss_pred             cCCceEEEEECC-----CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           31 DVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        31 h~~~V~~~~~s~-----~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      |..+|..++|++     .-..+||.+.+ .+.||+.......                        ..+......     
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i------------------------r~lq~y~D~-----   86 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI------------------------RLLQSYADE-----   86 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce------------------------eeeeeccCC-----
Confidence            788999999985     33567777754 7999998754321                        111121111     


Q ss_pred             ccccccccCcEEEEEEEecCC--CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          106 YLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                           ++++.-..++|+-..+  +.++|.++.-|.|++.|+..+++...                               
T Consensus        87 -----d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~-------------------------------  130 (385)
T KOG1034|consen   87 -----DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN-------------------------------  130 (385)
T ss_pred             -----CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------------------
Confidence                 1225677778854322  45788888999999999988765432                               


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                                                   + .+|...|+.+.++|+. ++++++ .|..|++|+++ ...++.++    .
T Consensus       131 -----------------------------~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~Vf----G  175 (385)
T KOG1034|consen  131 -----------------------------Y-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVF----G  175 (385)
T ss_pred             -----------------------------e-eccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEe----c
Confidence                                         1 6899999999999964 677788 99999999999 77888776    3


Q ss_pred             cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccc--cccc-cc--ccCcc------cceeccccce
Q 012721          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI--LRDA-AE--SHGSK------SFFTEIIASI  330 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~--~~~~-~~--~~~~~------~~~~~h~~~v  330 (457)
                      -+++|.+.|.++.|+++| .+|++++.|..|++|++...+.-......  +... ..  -|..+      .+-.-|...|
T Consensus       176 G~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV  254 (385)
T KOG1034|consen  176 GVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV  254 (385)
T ss_pred             ccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence            478999999999999999 89999999999999999854221110011  0000 00  00000      1234677888


Q ss_pred             EEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccC--CCCccccceEEEcCCCcEEEEEeCCCc
Q 012721          331 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN--NDSIFDKFECSVSGDGLHFATGSYSNL  407 (457)
Q Consensus       331 ~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~s~~~dg~  407 (457)
                      .|+.|-  |.++++-+ ++.|..|....-.+.+......+.....+..+.-  .+.+|  ...+|.|-+++||.|...|.
T Consensus       255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf--irf~~d~~~~~la~gnq~g~  330 (385)
T KOG1034|consen  255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF--IRFAFDPWQKMLALGNQSGK  330 (385)
T ss_pred             HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE--EEEeecHHHHHHhhccCCCc
Confidence            888887  68888854 5999999872112222222222222111111111  11122  34566677899999999999


Q ss_pred             EEEEecCCCCcee-eEE--ecCCCcceeeeeccCCcceec
Q 012721          408 LRIFSHGVGSAGG-ITV--EAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       408 i~iw~~~~~~~~~-~~~--~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      |++||+++.+... .++  ......|+..+|+-|++...-
T Consensus       331 v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~  370 (385)
T KOG1034|consen  331 VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVL  370 (385)
T ss_pred             EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEE
Confidence            9999999875532 222  233567899999999876543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=8.2e-20  Score=166.00  Aligned_cols=276  Identities=14%  Similarity=0.184  Sum_probs=202.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (457)
                      .|..++|.|||..|+.+..+ .+.|||...+..                           +.++++|.            
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~l---------------------------lqtLKgHK------------   53 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTL---------------------------LQPLKGHK------------   53 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccc---------------------------cccccccc------------
Confidence            89999999999888777644 699999988764                           46899999            


Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      +.|++++|  +.+|+.|++|+.|+.|.+|+-.-   .-+..+.....+.+++|++.+..+.....               
T Consensus        54 DtVycVAy--s~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsL---------------  113 (1081)
T KOG1538|consen   54 DTVYCVAY--AKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSL---------------  113 (1081)
T ss_pred             ceEEEEEE--ccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcch---------------
Confidence            88999999  79999999999999999998543   33455566666778888876654443222               


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                      +..-+|..+.+...+      ......|.+++|..||++++.| .||+|.+-+-. ..+...+-     ...+..++|.+
T Consensus       114 sdFglWS~~qK~V~K------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~-----Rpgg~Nspiws  181 (1081)
T KOG1538|consen  114 SDFGLWSPEQKSVSK------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE-----RPGGSNSPIWS  181 (1081)
T ss_pred             hhccccChhhhhHHh------hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe-----CCCCCCCCceE
Confidence            123345443221111      2234578899999999999999 99999998765 44444431     23567789999


Q ss_pred             EEEecCCc----cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ec
Q 012721          273 AEFHPIYC----NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY  347 (457)
Q Consensus       273 v~~~p~~~----~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~  347 (457)
                      ++|+|..+    ..+++..-..++.+|.+.... +.+ .+.+.                -.-.|+.+.++|+|+..| ++
T Consensus       182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-Igk-~r~L~----------------FdP~CisYf~NGEy~LiGGsd  243 (1081)
T KOG1538|consen  182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-IGK-DRALN----------------FDPCCISYFTNGEYILLGGSD  243 (1081)
T ss_pred             EEecCCCCCCccceEEEEeccceeEEEEeccee-ecc-cccCC----------------CCchhheeccCCcEEEEccCC
Confidence            99999642    367777777888888775532 110 01111                234688999999999986 46


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      +.+.+|--+  +..+.++...+.++               +++...|++++++.|+.||+|.-|++-..
T Consensus       244 k~L~~fTR~--GvrLGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  244 KQLSLFTRD--GVRLGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             CceEEEeec--CeEEeeccccceeE---------------EEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            999999754  66677766656655               78999999999999999999999997643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.1e-19  Score=144.01  Aligned_cols=282  Identities=14%  Similarity=0.157  Sum_probs=188.7

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      ..|.+-+++|.+++|+.|..+|.|.++.+......                 +...|....+..+++|+           
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-----------------sa~~~gk~~iv~eqahd-----------   62 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-----------------SAEPPGKLKIVPEQAHD-----------   62 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-----------------ccCCCCCcceeeccccC-----------
Confidence            35666789999999999999999999998754321                 01122334555678898           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                       ++|+.++|.   + .+|++++ ||.|+-|..+......                                         
T Consensus        63 -gpiy~~~f~---d-~~Lls~g-dG~V~gw~W~E~~es~-----------------------------------------   95 (325)
T KOG0649|consen   63 -GPIYYLAFH---D-DFLLSGG-DGLVYGWEWNEEEESL-----------------------------------------   95 (325)
T ss_pred             -CCeeeeeee---h-hheeecc-CceEEEeeehhhhhhc-----------------------------------------
Confidence             999999993   3 3666665 4999999887643210                                         


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                       +.-++|..........      -.--.|+++...|..+-++.+ .|+.++-||++ .+...+.       +.+|++.+.
T Consensus        96 -~~K~lwe~~~P~~~~~------~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~-------~rGHtDYvH  160 (325)
T KOG0649|consen   96 -ATKRLWEVKIPMQVDA------VEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQRE-------YRGHTDYVH  160 (325)
T ss_pred             -cchhhhhhcCccccCc------ccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEE-------EcCCcceee
Confidence             0122333322111111      112368899999877666666 99999999999 6766655       799999999


Q ss_pred             EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc-cceEEEEEccCCCeEEEEecCcE
Q 012721          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNL  350 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~~~i  350 (457)
                      ++.-.... ..+++|++||++|+||.++++..    ++++.    ......+..|. ..|.+++-  +..+|++|....+
T Consensus       161 ~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~----yk~~~~lRp~~g~wigala~--~edWlvCGgGp~l  229 (325)
T KOG0649|consen  161 SVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEP----YKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKL  229 (325)
T ss_pred             eeeecccC-cceeecCCCccEEEEecccccee----EEecc----ccChhhcCcccCceeEEEec--cCceEEecCCCce
Confidence            99885554 68999999999999999998755    33332    11112223333 34666655  4779999988999


Q ss_pred             EEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcc
Q 012721          351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  430 (457)
Q Consensus       351 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v  430 (457)
                      .+|+++. .++...+......                ..+.|-  ...++++++-+.|.-|.+. | .............
T Consensus       230 slwhLrs-se~t~vfpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~-G-vl~a~ip~~s~~c  288 (325)
T KOG0649|consen  230 SLWHLRS-SESTCVFPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN-G-VLQANIPVESTAC  288 (325)
T ss_pred             eEEeccC-CCceEEEecccce----------------eEeeee--cceEEEeccccceeeeeec-c-EEEEeccCCccce
Confidence            9999986 6776666544432                356674  4478888888889999875 3 3444444444344


Q ss_pred             eeeeec
Q 012721          431 RKPILQ  436 (457)
Q Consensus       431 ~~~~~~  436 (457)
                      .+..++
T Consensus       289 ~s~s~~  294 (325)
T KOG0649|consen  289 YSASWQ  294 (325)
T ss_pred             eeeccc
Confidence            444333

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=8.2e-20  Score=151.19  Aligned_cols=271  Identities=13%  Similarity=0.210  Sum_probs=179.0

Q ss_pred             ccccchhhHHhhhcCCCCCCccccCCceEEEEECC--CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccc
Q 012721            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (457)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (457)
                      ..+...|.++...+.        |.+.|..+.|.+  -|+.+|+++.|++++||.-......                  
T Consensus        43 ~~~s~~W~~Ts~Wra--------h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~------------------   96 (361)
T KOG2445|consen   43 TSDSGTWSCTSSWRA--------HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE------------------   96 (361)
T ss_pred             cCCCCceEEeeeEEe--------cCCcEEEEEecCccccceEEEEecCCceeeeeecccccc------------------
Confidence            345566777776666        999999999987  5899999999999999985422210                  


Q ss_pred             cCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeee
Q 012721           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (457)
Q Consensus        86 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  165 (457)
                      .....+...+++....            ..|++|.|.|..-|-.+++++.||.+|||+.-+---                
T Consensus        97 ~~~~~Wv~~ttl~Dsr------------ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n----------------  148 (361)
T KOG2445|consen   97 AHGRRWVRRTTLVDSR------------SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN----------------  148 (361)
T ss_pred             cccceeEEEEEeecCC------------cceeEEEecchhcceEEEEeccCcEEEEEecCCccc----------------
Confidence            0001333444555555            789999999888899999999999999998654211                


Q ss_pred             eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCEEEEeCC----
Q 012721          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSADD----  238 (457)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~~d----  238 (457)
                                                    +.-|.+..+.  +.+......+..+..|+.|+|   ...+|+.|.|    
T Consensus       149 ------------------------------Ls~W~Lq~Ei--~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~  196 (361)
T KOG2445|consen  149 ------------------------------LSQWTLQHEI--QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAP  196 (361)
T ss_pred             ------------------------------cccchhhhhh--hhccCCcccccCcceEEeeccccccCceEEEEcccCCc
Confidence                                          1122221110  000001134667788999987   3567888844    


Q ss_pred             --CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc---cEEEEEccCCeEEEEEccCCeeeccccccccc-
Q 012721          239 --LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGFVRLVDMRQSALCDHSARILRD-  312 (457)
Q Consensus       239 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~---~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~-  312 (457)
                        +.++||.....+.....+    .++.+|..+|++++|.|+-+   .+||+++.|| |+||.++.............. 
T Consensus       197 ~~~~~~Iye~~e~~rKw~kv----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~  271 (361)
T KOG2445|consen  197 HLNKVKIYEYNENGRKWLKV----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPD  271 (361)
T ss_pred             cccceEEEEecCCcceeeee----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCC
Confidence              489999887555333222    35779999999999999642   4899999999 999999853211000000000 


Q ss_pred             -ccccc-CcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCC--CCceeEeeecc
Q 012721          313 -AAESH-GSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD--STPVATFKIHE  369 (457)
Q Consensus       313 -~~~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~--~~~~~~~~~~~  369 (457)
                       -.+.+ .....+.+|++.|+.+.|+-.|..|++.+ ||.|++|.....  .++...+....
T Consensus       272 ~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~  333 (361)
T KOG2445|consen  272 LMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEG  333 (361)
T ss_pred             CccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccC
Confidence             00001 11234788999999999999999999755 599999987532  23444444433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.5e-19  Score=170.07  Aligned_cols=240  Identities=17%  Similarity=0.241  Sum_probs=176.0

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      +...|.+++..  +.+|++|+.+++|.+|....++..                           ..+...+         
T Consensus        55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~---------------------------~iL~Rft---------   96 (933)
T KOG1274|consen   55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED---------------------------TILARFT---------   96 (933)
T ss_pred             cCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc---------------------------ceeeeee---------
Confidence            78888888887  569999999999999999877642                           1122222         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         -++.+++|  +.+|++++.||.|-.|++-++.+...+..                                      
T Consensus        97 ---lp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~--------------------------------------  133 (933)
T KOG1274|consen   97 ---LPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKV--------------------------------------  133 (933)
T ss_pred             ---ccceEEEE--ecCCcEEEeecCceeEEEEeccccchhee--------------------------------------
Confidence               57899999  78999999999999999999887654332                                      


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC-CCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTE  268 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~  268 (457)
                                             +.+|..+|.++.|+|++++||++ .||.|++||+. .+.....+..-...... ...
T Consensus       134 -----------------------lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~-~~~~~~tl~~v~k~n~~~~s~  189 (933)
T KOG1274|consen  134 -----------------------LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ-DGILSKTLTGVDKDNEFILSR  189 (933)
T ss_pred             -----------------------ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc-cchhhhhcccCCccccccccc
Confidence                                   27899999999999999999999 99999999999 55554443211111111 245


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~  347 (457)
                      .+..++|+|++ ..++..+.|+.|++|+.......    ..+..           ..+...+..++|+|+|+|||+++ +
T Consensus       190 i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~----f~Lr~-----------~~~ss~~~~~~wsPnG~YiAAs~~~  253 (933)
T KOG1274|consen  190 ICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQ----FKLRD-----------KLSSSKFSDLQWSPNGKYIAASTLD  253 (933)
T ss_pred             eeeeeeecCCC-CeEEeeccCCeEEEEccCCceeh----eeecc-----------cccccceEEEEEcCCCcEEeeeccC
Confidence            67789999998 77788889999999998887543    22222           12234599999999999999987 4


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  411 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw  411 (457)
                      |.|.|||.++       ...|....             .|.+++|.|+..-|-.-...|...+|
T Consensus       254 g~I~vWnv~t-------~~~~~~~~-------------~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  254 GQILVWNVDT-------HERHEFKR-------------AVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             CcEEEEeccc-------chhccccc-------------eeEEEecCCCCCeeEEEeeccccccC
Confidence            9999999974       11132211             12578899987766554444444444

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=1.4e-19  Score=148.59  Aligned_cols=260  Identities=18%  Similarity=0.209  Sum_probs=179.6

Q ss_pred             ccCCceEEEEECC-CCCEEEEEeCC-------CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec-cC
Q 012721           30 QDVDIVSAIEFDK-TGDYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SH  100 (457)
Q Consensus        30 ~h~~~V~~~~~s~-~~~~latg~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h  100 (457)
                      .|.+.|+.++-+| +..+|+|+..+       -.+.||.+......                  +.....+++..+. .+
T Consensus        61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~------------------S~~~tlE~v~~Ldtea  122 (370)
T KOG1007|consen   61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ------------------SNSSTLECVASLDTEA  122 (370)
T ss_pred             cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc------------------cccchhhHhhcCCHHH
Confidence            3789999999999 45677776432       23779998654321                  1111222333333 22


Q ss_pred             CccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccccee-EEEeecCCCceeeeeeccccccccccCCC
Q 012721          101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (457)
Q Consensus       101 ~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (457)
                      -            +.|.|+.|.  |++..+++-. |..|.+|++..+... .......                      
T Consensus       123 v------------g~i~cvew~--Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~----------------------  165 (370)
T KOG1007|consen  123 V------------GKINCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE----------------------  165 (370)
T ss_pred             h------------CceeeEEEc--CCCCeeEEec-cCceEEEEcccCcchheeecccc----------------------
Confidence            2            689999995  6777777766 788999999887542 1111000                      


Q ss_pred             CCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEeCCCeEEEEEcCCCcceeeeee
Q 012721          180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVD  257 (457)
Q Consensus       180 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~d~~i~iwd~~~~~~~~~~~~  257 (457)
                                                        ..++....++-+|+|  +++.+++..|+++..||+++..+...+  
T Consensus       166 ----------------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI--  209 (370)
T KOG1007|consen  166 ----------------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI--  209 (370)
T ss_pred             ----------------------------------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch--
Confidence                                              034666788889998  888998889999999999966555544  


Q ss_pred             cCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (457)
Q Consensus       258 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  337 (457)
                           -..|...+..+.|+|+...+|++|+.||.|++||.|+-+..                ...+.+|.-.|+++.|+|
T Consensus       210 -----~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p----------------v~el~~HsHWvW~VRfn~  268 (370)
T KOG1007|consen  210 -----EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP----------------VQELPGHSHWVWAVRFNP  268 (370)
T ss_pred             -----hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc----------------ccccCCCceEEEEEEecC
Confidence                 35688889999999998678999999999999999985421                122467889999999999


Q ss_pred             C-CCeEEEE-ecCcEEEEeccCCC-C---------------------------ceeEeeeccccccccccccCCCCcccc
Q 012721          338 D-GQHLLSR-DYMNLKLWDIRMDS-T---------------------------PVATFKIHEHLRPKLCDLYNNDSIFDK  387 (457)
Q Consensus       338 ~-g~~l~s~-~~~~i~~wd~~~~~-~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v  387 (457)
                      . .++|+++ +|..|.+|....-. +                           .+.++..|+.               .|
T Consensus       269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED---------------SV  333 (370)
T KOG1007|consen  269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED---------------SV  333 (370)
T ss_pred             ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc---------------ce
Confidence            6 4556665 56899999764311 1                           1112222322               23


Q ss_pred             ceEEEcC-CCcEEEEEeCCCcEEEEecCCC
Q 012721          388 FECSVSG-DGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       388 ~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      ++++||. |.-.+|+-++||++.|=++...
T Consensus       334 Y~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  334 YALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             EEEeeccCCCeeEEEeccCceEEeecCChh
Confidence            7999986 5667788999999988776543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=2.3e-19  Score=153.33  Aligned_cols=235  Identities=15%  Similarity=0.224  Sum_probs=164.1

Q ss_pred             eeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccc
Q 012721           96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (457)
Q Consensus        96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (457)
                      .+.||.            ++|..++|+| .+.+.||+||.|.+|.||.+..+.......                     
T Consensus        76 ~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------  121 (472)
T KOG0303|consen   76 LVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------  121 (472)
T ss_pred             CccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCcc---------------------
Confidence            467788            9999999997 556799999999999999988764432211                     


Q ss_pred             cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCccee
Q 012721          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCF  253 (457)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~  253 (457)
                                                      .++..+ .+|...|-.++|+|. .+.|+++ .|..|.+||+.+....+
T Consensus       122 --------------------------------epvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali  168 (472)
T KOG0303|consen  122 --------------------------------EPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI  168 (472)
T ss_pred             --------------------------------cceEEE-eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee
Confidence                                            223333 799999999999995 4566666 99999999999544444


Q ss_pred             eeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc-cceEE
Q 012721          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISD  332 (457)
Q Consensus       254 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~  332 (457)
                      .        +. |.+.|++++|+.+| .+|++.+.|..|||||.++++.....                 .+|. ..-..
T Consensus       169 ~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~-----------------~~heG~k~~R  221 (472)
T KOG0303|consen  169 T--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG-----------------VAHEGAKPAR  221 (472)
T ss_pred             e--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec-----------------ccccCCCcce
Confidence            3        33 99999999999999 99999999999999999998654211                 1122 23456


Q ss_pred             EEEccCCCeEEEE----ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEE-EEeCCCc
Q 012721          333 IKFANDGQHLLSR----DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNL  407 (457)
Q Consensus       333 ~~~s~~g~~l~s~----~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~  407 (457)
                      +.|-.+|.++.+|    ++..+-+||...-.+++........ ..+             .---|.+|...|+ +|-.|+.
T Consensus       222 aifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGv-------------l~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  222 AIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGV-------------LLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             eEEeccCceeeeccccccccceeccCcccccCcceeEEeccC-Cce-------------EEeeecCCCCEEEEEecCCcc
Confidence            6788888866666    3488999998654444332222211 111             2344567766665 4567999


Q ss_pred             EEEEecCCCCceeeEEec--CCCcceeeeeccC
Q 012721          408 LRIFSHGVGSAGGITVEA--GKNENRKPILQAA  438 (457)
Q Consensus       408 i~iw~~~~~~~~~~~~~~--~~~~v~~~~~~p~  438 (457)
                      |+.|.+.+....+.-+..  ...|-+.+.|-|-
T Consensus       288 IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  288 IRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             eEEEEecCCCceeEEecccccCCcccccccccc
Confidence            999999987433443332  2445555655553

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=1.5e-19  Score=148.43  Aligned_cols=193  Identities=14%  Similarity=0.137  Sum_probs=148.9

Q ss_pred             cCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcce--eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC
Q 012721          215 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  290 (457)
Q Consensus       215 ~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg  290 (457)
                      ..+..+++++.|+. +-++|.++ -|-+..|||++. +..  +++      .+-.|...|..|+|...+...||+.+.||
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~-~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDG  219 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET-GVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADG  219 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEee-ccccceee------EEEecCcceeEEEeccCccceEEEecCCC
Confidence            45677999999986 67788888 999999999994 322  221      36789999999999998778999999999


Q ss_pred             eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEE-ec-CcEEEEeccCCCCceeEeee
Q 012721          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR-DY-MNLKLWDIRMDSTPVATFKI  367 (457)
Q Consensus       291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~-~~-~~i~~wd~~~~~~~~~~~~~  367 (457)
                      .+|+||+|..+..    .++-.   .+..       ..+...++|++. -+|+|+- -+ ..|.+.|++.+..++..+++
T Consensus       220 SvRmFDLR~leHS----TIIYE---~p~~-------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~  285 (364)
T KOG0290|consen  220 SVRMFDLRSLEHS----TIIYE---DPSP-------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN  285 (364)
T ss_pred             cEEEEEecccccc----eEEec---CCCC-------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc
Confidence            9999999985432    33322   1111       357888999875 4677763 44 89999999998999999999


Q ss_pred             ccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCc----eeeEEecCCCcceeeeeccCCcce
Q 012721          368 HEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAAPRAR  442 (457)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~  442 (457)
                      |...+               ..++|.|. ...|+++++|..+.+||++....    .....-...+.|+.+.|+|..|.-
T Consensus       286 H~a~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dw  350 (364)
T KOG0290|consen  286 HQASV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDW  350 (364)
T ss_pred             Ccccc---------------cceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCE
Confidence            99877               58999997 57899999999999999986422    111222357889999999887754


Q ss_pred             e
Q 012721          443 R  443 (457)
Q Consensus       443 ~  443 (457)
                      .
T Consensus       351 i  351 (364)
T KOG0290|consen  351 I  351 (364)
T ss_pred             E
Confidence            3

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=9.1e-21  Score=182.46  Aligned_cols=263  Identities=14%  Similarity=0.226  Sum_probs=193.9

Q ss_pred             CCCCccccCCceEEEEECCCCCE----EEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc
Q 012721           24 NPDEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS   99 (457)
Q Consensus        24 ~~~~~~~h~~~V~~~~~s~~~~~----latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (457)
                      .+...++-...-+.++|.+.|..    ||.|..||.|.+|+.......                     .+...+.++..
T Consensus        56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~---------------------~~~~~la~~~~  114 (1049)
T KOG0307|consen   56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN---------------------ASEEVLATKSK  114 (1049)
T ss_pred             cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccC---------------------cchHHHhhhcc
Confidence            34445556778899999997755    899999999999998753110                     13346667777


Q ss_pred             CCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCC
Q 012721          100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (457)
Q Consensus       100 h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (457)
                      |.            +.|..+.|.+ ..+++|++|+.||.|.|||+.+-+.-....                         
T Consensus       115 h~------------G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~~-------------------------  156 (1049)
T KOG0307|consen  115 HT------------GPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTPG-------------------------  156 (1049)
T ss_pred             cC------------Cceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCCC-------------------------
Confidence            88            9999999953 335599999999999999998732111000                         


Q ss_pred             CCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeee
Q 012721          180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVD  257 (457)
Q Consensus       180 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  257 (457)
                                                        ...-...|.+++|+.. ...|+++ .+|.+.|||++.....+..- 
T Consensus       157 ----------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-  201 (1049)
T KOG0307|consen  157 ----------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-  201 (1049)
T ss_pred             ----------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-
Confidence                                              0234568999999875 4556667 88999999999544444321 


Q ss_pred             cCCCcccCCCCceEEEEEecCCccEEEEEccCC---eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEE
Q 012721          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (457)
Q Consensus       258 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  334 (457)
                           .......+..++|+|+....|++++.|.   .|.+||+|.-..   ..+             .+.+|...|.++.
T Consensus       202 -----~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k-------------~~~~H~~Gilsls  260 (1049)
T KOG0307|consen  202 -----DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLK-------------ILEGHQRGILSLS  260 (1049)
T ss_pred             -----cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chh-------------hhcccccceeeec
Confidence                 1222245788999999978888888664   699999987421   112             2456889999999


Q ss_pred             EccCC-CeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEE
Q 012721          335 FANDG-QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIF  411 (457)
Q Consensus       335 ~s~~g-~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw  411 (457)
                      |++.+ ++|+++ .|+.|.+|+.++ ++.+..+....+++               +.+.|+|... .++.++.||.|.|+
T Consensus       261 Wc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~---------------fdv~w~pr~P~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  261 WCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWC---------------FDVQWCPRNPSVMAAASFDGKISIY  324 (1049)
T ss_pred             cCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcce---------------eeeeecCCCcchhhhheeccceeee
Confidence            99976 677765 479999999987 88888887766654               6899999755 88889999999999


Q ss_pred             ecCCCC
Q 012721          412 SHGVGS  417 (457)
Q Consensus       412 ~~~~~~  417 (457)
                      .+.+..
T Consensus       325 sl~~~~  330 (1049)
T KOG0307|consen  325 SLQGTD  330 (1049)
T ss_pred             eeecCC
Confidence            998763

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=3.9e-19  Score=169.47  Aligned_cols=302  Identities=12%  Similarity=0.169  Sum_probs=206.0

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      ..-..+.|+|-...+++++..-.|+|||.+.++.                           +..|..+...         
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~---------------------------l~~F~n~~~~--------- 1108 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL---------------------------LNGFDNGAFP--------- 1108 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCce---------------------------eccccCCCCC---------
Confidence            3567889999889999998777899999987764                           2333333321         


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEec-c--cceeEEEeecCCC--------ceeeeeeccccccccccCCCCC
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-D--QKVKKIKEMDHFP--------FVSSENTLLAEKNFMNEHNPPS  181 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~-~--~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  181 (457)
                      ...|+.+.+....|..++++|+.||.|+||+-. +  ++...+.....-.        .-+-+.|....|.++.++.   
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd--- 1185 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD--- 1185 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC---
Confidence            167999999866777899999999999999733 2  2222221111000        0011222222222222211   


Q ss_pred             ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeC-CCCCEEEEe-CCCeEEEEEcCCCcc--eeeeee
Q 012721          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQ--CFNIVD  257 (457)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~  257 (457)
                                 ...|++||.+.+.....+.   .+....|+++.-+ ..|+.+++| .||.|++||.+....  .+..  
T Consensus      1186 -----------~r~IRIWDa~~E~~~~diP---~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~-- 1249 (1387)
T KOG1517|consen 1186 -----------VRSIRIWDAHKEQVVADIP---YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV-- 1249 (1387)
T ss_pred             -----------eeEEEEEecccceeEeecc---cCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee--
Confidence                       2389999998654333332   4455667777654 357999999 999999999985433  2222  


Q ss_pred             cCCCcccCCCCc--eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721          258 MKPSNMDDLTEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (457)
Q Consensus       258 ~~~~~~~~~~~~--i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  335 (457)
                           ...|+..  |..+.+.+.|-..|++|+.||.|++||++... ......+...           ....+.++++..
T Consensus      1250 -----~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~-----------~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1250 -----YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAH-----------WEYGSALTALTV 1312 (1387)
T ss_pred             -----ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeec-----------cccCccceeeee
Confidence                 4668777  99999999884569999999999999999842 1111111110           001235899999


Q ss_pred             ccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721          336 ANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       336 s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      ++....+|+|+.+.|+||++.  ++.+..++.+..        +....+..+.+++|+|..-.+|+|+.|.+|.||....
T Consensus      1313 H~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~--------F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1313 HEHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPG--------FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             ccCCCeeeecCcceEEEEecC--hhhhcccccCcc--------cccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence            999999999988999999995  677666664433        3334555568999999999999999999999999876


Q ss_pred             C
Q 012721          416 G  416 (457)
Q Consensus       416 ~  416 (457)
                      +
T Consensus      1383 ~ 1383 (1387)
T KOG1517|consen 1383 P 1383 (1387)
T ss_pred             c
Confidence            5

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2e-20  Score=166.91  Aligned_cols=282  Identities=14%  Similarity=0.155  Sum_probs=193.7

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ....|.+.|++++|.|....|++++.||+|++|+++....                   +.....+.+.+|++|.     
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-------------------s~~~~~epi~tfraH~-----  344 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-------------------SAEKDVEPILTFRAHE-----  344 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-------------------ccccceeeeEEEeccc-----
Confidence            3445999999999999999999999999999999943221                   1222567888999999     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ++|.|+++  ..++.++++|+.||+|+.|++.... -..-.              .+.               
T Consensus       345 -------gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-dp~ds--------------~dp---------------  385 (577)
T KOG0642|consen  345 -------GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-DPDDS--------------YDP---------------  385 (577)
T ss_pred             -------CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-Ccccc--------------cCc---------------
Confidence                   99999999  7899999999999999999876211 00000              000               


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                           ..+...+.||.+.|+.+++++....|+++ .||++++|+.. .... .++..    .+.
T Consensus       386 ---------------------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~-~~~~-~~f~~----~~e  438 (577)
T KOG0642|consen  386 ---------------------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT-EESP-CTFGE----PKE  438 (577)
T ss_pred             ---------------------chhccceeccccceeeeeecccccceeeecCCceEEeeccC-CcCc-cccCC----ccc
Confidence                                 01111127999999999999988899999 99999999987 3333 22211    122


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      | +..+++.+-...+..+++...-+.--++++.....    ..++.. ...+..     .-...+..+.++|.+.+.+++
T Consensus       439 ~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s-~~~~~~-----~~~~~in~vVs~~~~~~~~~~  507 (577)
T KOG0642|consen  439 H-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFES-SASPGP-----RRYPQINKVVSHPTADITFTA  507 (577)
T ss_pred             c-CCcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccc-cCCCcc-----cccCccceEEecCCCCeeEec
Confidence            2 33456666544312222222223333333333221    123322 111100     002457788899999888887


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      -+ +.|+++|..+ ++++.....|...+               +++++.|+|.+|++++.|+++++|.+... .+.....
T Consensus       508 hed~~Ir~~dn~~-~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv~l~kld~k-~~~~es~  570 (577)
T KOG0642|consen  508 HEDRSIRFFDNKT-GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSVRLWKLDVK-TCVLEST  570 (577)
T ss_pred             ccCCceecccccc-cccchheeecccee---------------cceeecCCCceEEeecCCceeehhhccch-heeeccc
Confidence            64 9999999986 89998888888765               79999999999999999999999999766 4444444


Q ss_pred             cC
Q 012721          425 AG  426 (457)
Q Consensus       425 ~~  426 (457)
                      .|
T Consensus       571 ~~  572 (577)
T KOG0642|consen  571 AH  572 (577)
T ss_pred             cc
Confidence            44

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=4.6e-19  Score=151.44  Aligned_cols=299  Identities=12%  Similarity=0.071  Sum_probs=204.4

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      .+.|++-|.++.||.++++||+|+.|..+++|.++..-..                     ...+++ .+.+|.      
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~---------------------k~~KPI-~~~~~~------  103 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR---------------------KTPKPI-GVMEHP------  103 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh---------------------cCCCCc-eeccCc------
Confidence            4569999999999999999999999999999998753221                     000112 233333      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                          |...|.|++|  ...+..+++|..+++|.+.|+++.+.+.+...                                
T Consensus       104 ----H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~--------------------------------  145 (609)
T KOG4227|consen  104 ----HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANE--------------------------------  145 (609)
T ss_pred             ----cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecc--------------------------------
Confidence                2277999999  56777899999999999999998765443211                                


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                 ....+.|+.+..+|-.+.|++. .++.|.+||.+........+-     +...
T Consensus       146 ---------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-----~AN~  193 (609)
T KOG4227|consen  146 ---------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-----PANS  193 (609)
T ss_pred             ---------------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-----ecCC
Confidence                                       2345589999999988888888 999999999984332333221     2334


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ......+.|+|..+.+|++.+..+-+.+||++..+...-....+..          +......-.++.|+|+|..+.+--
T Consensus       194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~----------L~~~~~~~M~~~~~~~G~Q~msiR  263 (609)
T KOG4227|consen  194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG----------LPQENTEWMGSLWSPSGNQFMSIR  263 (609)
T ss_pred             CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcccc----------CcccchhhhheeeCCCCCeehhhh
Confidence            4667889999999899999999999999999875422100011111          011112346788999998877654


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC---------
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------  416 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~---------  416 (457)
                      - ..-.+||+-....++..+. |....      |-  .++.+-+++|..|-. +++|+.+=.|++|.+...         
T Consensus       264 R~~~P~~~D~~S~R~~V~k~D-~N~~G------Y~--N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~I  333 (609)
T KOG4227|consen  264 RGKCPLYFDFISQRCFVLKSD-HNPNG------YC--NIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQI  333 (609)
T ss_pred             ccCCCEEeeeecccceeEecc-CCCCc------ce--eeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCcccc
Confidence            3 4445678764222333332 22110      00  112225788876644 999999999999998542         


Q ss_pred             -------------CceeeEEecCCCcceeeeeccCCcceec
Q 012721          417 -------------SAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       417 -------------~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                                   +....++.||.+-++.|.|+|..-+..+
T Consensus       334 G~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~S  374 (609)
T KOG4227|consen  334 GHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVS  374 (609)
T ss_pred             CcchhhCchhheecceeEEEecccccccceeecCCcceEec
Confidence                         1235678999999999999998877665

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.84  E-value=7.1e-18  Score=152.96  Aligned_cols=258  Identities=10%  Similarity=0.084  Sum_probs=160.5

Q ss_pred             cCCceEEEEECCCCCEE-EEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           31 DVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      +...+.+++|+|+++.+ ++++.++.|++||..+++.                           +..+..+.        
T Consensus        29 ~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~--------   73 (300)
T TIGR03866        29 VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV---------------------------IGTLPSGP--------   73 (300)
T ss_pred             CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE---------------------------EEeccCCC--------
Confidence            34457889999999876 5677889999999887653                           22333332        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          110 LEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           .+..+.|  +++++.+++ ++.|+.|++||+.+++.......  ...+..++|.+....++....          
T Consensus        74 -----~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~----------  134 (300)
T TIGR03866        74 -----DPELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTSE----------  134 (300)
T ss_pred             -----CccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEec----------
Confidence                 2456778  678877655 45689999999988765444332  122334444432222211111          


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                         ....+.+|+.+..   +.....  .......+++|+|+++.|++ + .++.|++||++ .++....+..........
T Consensus       135 ---~~~~~~~~d~~~~---~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~  205 (300)
T TIGR03866       135 ---TTNMAHFIDTKTY---EIVDNV--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA-TRKVIKKITFEIPGVHPE  205 (300)
T ss_pred             ---CCCeEEEEeCCCC---eEEEEE--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC-cceeeeeeeecccccccc
Confidence               0113455665432   222211  12234577999999998854 4 69999999998 455444332111000111


Q ss_pred             CCceEEEEEecCCccEE-EEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          267 TEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ......++|+|++ +++ ++...++.+.+||+++++..    ....              +...+.+++|+|+|++|+++
T Consensus       206 ~~~~~~i~~s~dg-~~~~~~~~~~~~i~v~d~~~~~~~----~~~~--------------~~~~~~~~~~~~~g~~l~~~  266 (300)
T TIGR03866       206 AVQPVGIKLTKDG-KTAFVALGPANRVAVVDAKTYEVL----DYLL--------------VGQRVWQLAFTPDEKYLLTT  266 (300)
T ss_pred             cCCccceEECCCC-CEEEEEcCCCCeEEEEECCCCcEE----EEEE--------------eCCCcceEEECCCCCEEEEE
Confidence            1234568899999 664 44456778999999876543    1111              12468899999999999876


Q ss_pred             e--cCcEEEEeccCCCCceeEeeecccc
Q 012721          346 D--YMNLKLWDIRMDSTPVATFKIHEHL  371 (457)
Q Consensus       346 ~--~~~i~~wd~~~~~~~~~~~~~~~~~  371 (457)
                      .  ++.|++||++. ++.+..+.....+
T Consensus       267 ~~~~~~i~v~d~~~-~~~~~~~~~~~~~  293 (300)
T TIGR03866       267 NGVSNDVSVIDVAA-LKVIKSIKVGRLP  293 (300)
T ss_pred             cCCCCeEEEEECCC-CcEEEEEEccccc
Confidence            3  49999999986 7888888765443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.5e-19  Score=156.79  Aligned_cols=206  Identities=18%  Similarity=0.249  Sum_probs=158.0

Q ss_pred             cccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..|++.|.+++|+.+- +.||+|+.|.+|++||+.+++.                           ..++..|.      
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p---------------------------~~s~~~~~------  286 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP---------------------------KSSITHHG------  286 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc---------------------------ceehhhcC------
Confidence            3599999999999854 7899999999999999998873                           45666677      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            +.|.++.|+| .....|++|+.|++|.+.|.+.....                                     
T Consensus       287 ------k~Vq~l~wh~-~~p~~LLsGs~D~~V~l~D~R~~~~s-------------------------------------  322 (463)
T KOG0270|consen  287 ------KKVQTLEWHP-YEPSVLLSGSYDGTVALKDCRDPSNS-------------------------------------  322 (463)
T ss_pred             ------CceeEEEecC-CCceEEEeccccceEEeeeccCcccc-------------------------------------
Confidence                  8899999985 56779999999999999998852110                                     


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                              -+-|                ...+.|-.++|.|... .++++ .||.|+-+|++..++++..       ++.
T Consensus       323 --------~~~w----------------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt-------~~A  371 (463)
T KOG0270|consen  323 --------GKEW----------------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT-------LKA  371 (463)
T ss_pred             --------CceE----------------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE-------EEe
Confidence                    0011                1234688899988554 45566 9999999999977776654       688


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE-E
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-S  344 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s  344 (457)
                      |.+.|.++++++.-+.++++++.|+.|++|++..........+.+..               +...|.++.|+-.+++ .
T Consensus       372 Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~---------------~rl~c~~~~~~~a~~la~  436 (463)
T KOG0270|consen  372 HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL---------------GRLHCFALDPDVAFTLAF  436 (463)
T ss_pred             ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc---------------cceeecccCCCcceEEEe
Confidence            99999999999988889999999999999998765432222222322               4467778888765554 4


Q ss_pred             Eec-CcEEEEeccC
Q 012721          345 RDY-MNLKLWDIRM  357 (457)
Q Consensus       345 ~~~-~~i~~wd~~~  357 (457)
                      |+. +.+++||+.+
T Consensus       437 GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  437 GGEKAVLRVWDIFT  450 (463)
T ss_pred             cCccceEEEeeccc
Confidence            554 7899999965

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=6.4e-19  Score=153.58  Aligned_cols=229  Identities=16%  Similarity=0.265  Sum_probs=175.4

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ++|++|.|  +|...++++++.|+++++|.++......+...                                      
T Consensus       214 ~~I~sv~F--Hp~~plllvaG~d~~lrifqvDGk~N~~lqS~--------------------------------------  253 (514)
T KOG2055|consen  214 GGITSVQF--HPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI--------------------------------------  253 (514)
T ss_pred             CCceEEEe--cCCCceEEEecCCCcEEEEEecCccChhheee--------------------------------------
Confidence            78999999  57788999999999999999876533222111                                      


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC-Cce
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVI  270 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~i  270 (457)
                                           .-...+|.+++|.|+|. .++++ ....++.||+. ..+..++-     .+.++. ..+
T Consensus       254 ---------------------~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle-~ak~~k~~-----~~~g~e~~~~  306 (514)
T KOG2055|consen  254 ---------------------HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE-TAKVTKLK-----PPYGVEEKSM  306 (514)
T ss_pred             ---------------------eeccCccceeeecCCCceEEEecccceEEEEeecc-cccccccc-----CCCCcccchh
Confidence                                 12345899999999998 77777 89999999998 44443331     122332 356


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ecCc
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN  349 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~~~  349 (457)
                      .....++++ ++|+..+..|.|.+....+++.+    ..++.              .+.|..++|+.+++.|++. ++|.
T Consensus       307 e~FeVShd~-~fia~~G~~G~I~lLhakT~eli----~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  307 ERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELI----TSFKI--------------EGVVSDFTFSSDSKELLASGGTGE  367 (514)
T ss_pred             heeEecCCC-CeEEEcccCceEEeehhhhhhhh----heeee--------------ccEEeeEEEecCCcEEEEEcCCce
Confidence            778889999 99999999999999999988655    44444              4689999999999888765 5699


Q ss_pred             EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC-----CceeeEEe
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-----SAGGITVE  424 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~  424 (457)
                      |.+||++. ..++..+........              ++++.++++.|||+|+..|.|.|||.++-     -+++..+.
T Consensus       368 V~v~nl~~-~~~~~rf~D~G~v~g--------------ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d  432 (514)
T KOG2055|consen  368 VYVWNLRQ-NSCLHRFVDDGSVHG--------------TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD  432 (514)
T ss_pred             EEEEecCC-cceEEEEeecCccce--------------eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence            99999986 677877775544322              68999999999999999999999996542     24455566


Q ss_pred             cCCCcceeeeeccCCccee
Q 012721          425 AGKNENRKPILQAAPRARR  443 (457)
Q Consensus       425 ~~~~~v~~~~~~p~~~~~~  443 (457)
                      .-...|+.+.|+||....+
T Consensus       433 NLtt~Itsl~Fn~d~qiLA  451 (514)
T KOG2055|consen  433 NLTTAITSLQFNHDAQILA  451 (514)
T ss_pred             hhheeeeeeeeCcchhhhh
Confidence            6677899999999976544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=144.98  Aligned_cols=237  Identities=16%  Similarity=0.236  Sum_probs=167.7

Q ss_pred             EEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (457)
Q Consensus       116 V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (457)
                      -.++.|  ++.|.+||+|+.||.|.+||+.+.....+                                           
T Consensus        26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~-------------------------------------------   60 (405)
T KOG1273|consen   26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARM-------------------------------------------   60 (405)
T ss_pred             cceEEe--ccCcceeeeeccCCcEEEEEccccchhhh-------------------------------------------
Confidence            678899  78999999999999999999987543221                                           


Q ss_pred             eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCc----ccC-----
Q 012721          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDD-----  265 (457)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~-----  265 (457)
                                        +.+|..+|.+++|+++|+.|+++ .|..|++||+.. +.+.+-+.....-    +..     
T Consensus        61 ------------------lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rirf~spv~~~q~hp~k~n~  121 (405)
T KOG1273|consen   61 ------------------LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIRFDSPVWGAQWHPRKRNK  121 (405)
T ss_pred             ------------------hhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEEccCccceeeeccccCCe
Confidence                              26899999999999999999999 999999999984 3343322221100    000     


Q ss_pred             ------------------------------CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccccc
Q 012721          266 ------------------------------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE  315 (457)
Q Consensus       266 ------------------------------~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~  315 (457)
                                                    ......+..|++.| ++|++|...|.+.+||..+-++... .++..    
T Consensus       122 ~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas-~rits----  195 (405)
T KOG1273|consen  122 CVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVAS-FRITS----  195 (405)
T ss_pred             EEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC-CEEEEecCcceEEEEecchheeeee-eeech----
Confidence                                          00111223467777 8999999999999999988654311 11111    


Q ss_pred             ccCcccceeccccceEEEEEccCCCeEEEE-ecCcEEEEeccC---CCC--ceeEeeeccccccccccccCCCCccccce
Q 012721          316 SHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM---DST--PVATFKIHEHLRPKLCDLYNNDSIFDKFE  389 (457)
Q Consensus       316 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  389 (457)
                                 ...|..+.++-.|++|+.. +|..|+.|+++.   .++  .+.....-...++++       .   -.+
T Consensus       196 -----------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~-------~---Wk~  254 (405)
T KOG1273|consen  196 -----------VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL-------Q---WKK  254 (405)
T ss_pred             -----------heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh-------h---hhh
Confidence                       1468889999999999986 569999999852   111  010000001111111       0   147


Q ss_pred             EEEcCCCcEEEEEeC-CCcEEEEecCCCCceeeEEecCC-CcceeeeeccCCcceec
Q 012721          390 CSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPRARRS  444 (457)
Q Consensus       390 ~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~  444 (457)
                      ++||.||.|++.++. -..++||.-..| ..+..+.|.+ .....|.|+|-.|..++
T Consensus       255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~kgE~l~DV~whp~rp~i~s  310 (405)
T KOG1273|consen  255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTKGEELLDVNWHPVRPIIAS  310 (405)
T ss_pred             eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCchhheeecccccceeeeee
Confidence            999999999988775 457999999999 8888999988 56788999999888776

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=4.2e-18  Score=139.96  Aligned_cols=224  Identities=17%  Similarity=0.285  Sum_probs=159.3

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      +-+.|.|+.|.|++..||+-. |..|.+|+++.....                          ...+....       +.
T Consensus       122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~--------------------------vaev~ss~-------s~  167 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI--------------------------VAEVLSSE-------SA  167 (370)
T ss_pred             HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch--------------------------heeecccc-------cc
Confidence            567999999999999998866 678999999877641                          01111100       01


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      ++....++-+|+|..+++.+++.+ |+++..||+++......+.                                    
T Consensus       168 e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~------------------------------------  210 (370)
T KOG1007|consen  168 EMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE------------------------------------  210 (370)
T ss_pred             cccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh------------------------------------
Confidence            112557788998878898877654 7889999999765432211                                    


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCE-EEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                              ..|...|..+.|+|+.++ |++| +||.|+|||.+.....++.       +.+|..
T Consensus       211 ------------------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e-------l~~HsH  259 (370)
T KOG1007|consen  211 ------------------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE-------LPGHSH  259 (370)
T ss_pred             ------------------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc-------cCCCce
Confidence                                    678889999999998665 5667 9999999999966666643       789999


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc-----ccccccccc-------cccCcccceeccccceEEEEEc
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-----SARILRDAA-------ESHGSKSFFTEIIASISDIKFA  336 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~s  336 (457)
                      .+.++.|+|...++|++|+.|..|.+|....-....+     ...-.+.+.       -......++..|...|++++||
T Consensus       260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS  339 (370)
T KOG1007|consen  260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS  339 (370)
T ss_pred             EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence            9999999998878999999999999998765321100     000000000       0001124678999999999999


Q ss_pred             cCCCeEEEE-ec-CcEEEEecc
Q 012721          337 NDGQHLLSR-DY-MNLKLWDIR  356 (457)
Q Consensus       337 ~~g~~l~s~-~~-~~i~~wd~~  356 (457)
                      .-..++++. +. |++.|=.+.
T Consensus       340 sadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  340 SADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cCCCeeEEEeccCceEEeecCC
Confidence            887777654 64 888876653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=2.5e-18  Score=139.46  Aligned_cols=300  Identities=12%  Similarity=0.121  Sum_probs=192.2

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|+|+.|..++. |.+|...|.|++|.+.+....                           ..++++..       
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~---------------------------~~~r~~g~-------   56 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL---------------------------PLIRLFGR-------   56 (323)
T ss_pred             cccchheehhhccchh-hhcccccceEEEEEeecCccc---------------------------hhhhhhcc-------
Confidence            4889999999998775 889999999999999987642                           34553321       


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccc----cccccccCCCCCceec
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA----EKNFMNEHNPPSFAHG  185 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  185 (457)
                          ..|+.+.-.  ++ ..+.+-+.|..+.+|++..+....+....    ++++.|..-    ++...     ......
T Consensus        57 ----~~it~lq~~--p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~----~nslgFCrfSl~~~~k~~-----eqll~y  120 (323)
T KOG0322|consen   57 ----LFITNLQSI--PN-DSLDTQGRDPLLILWTIAYSAFISIHSIV----VNSLGFCRFSLVKKPKNS-----EQLLEY  120 (323)
T ss_pred             ----ceeeceeec--CC-cchhhcCCCceEEEEEccCcceEEEeeee----ccccccccceeccCCCcc-----hhheec
Confidence                567777764  33 57899999999999999886655443321    122222210    00000     000001


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCC--EEEEe-CCCeEEEEEcCCCcceeeeeecCC-
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKP-  260 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-  260 (457)
                      ++...+   .+.+-|.-...+.+.......+..+.+.|..+.- ++.  ++++| .+|.+.+||+......++.-...+ 
T Consensus       121 p~rgsd---e~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv  197 (323)
T KOG0322|consen  121 PSRGSD---ETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV  197 (323)
T ss_pred             CCcccc---hhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc
Confidence            111000   0111111111111100001134556777777532 333  45567 999999999995433322211000 


Q ss_pred             -CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721          261 -SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (457)
Q Consensus       261 -~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g  339 (457)
                       .....|..++.++.+.+.- ..=++|+.+..+..|.+.-..........             ..-.+..|..+..-||+
T Consensus       198 ~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e-------------~~lknpGv~gvrIRpD~  263 (323)
T KOG0322|consen  198 ESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKE-------------ITLKNPGVSGVRIRPDG  263 (323)
T ss_pred             ccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccce-------------EEecCCCccceEEccCC
Confidence             1245788999999999865 66678888888999988653111100001             11113578899999999


Q ss_pred             CeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          340 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       340 ~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                      +.+|+++ |+.||+|+.++ ..++..++.|...+               .+++|+||...+|+++.|++|.+|++
T Consensus       264 KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  264 KILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cEEeecccCCcEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCceEEeeec
Confidence            9999987 69999999997 89999999999766               69999999999999999999999997

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.81  E-value=1.8e-17  Score=155.44  Aligned_cols=287  Identities=17%  Similarity=0.211  Sum_probs=186.1

Q ss_pred             cchhhHHhhhcCCCCCCccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCC
Q 012721           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (457)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (457)
                      -.-|.++..   ..|...+.-...|.|++|+| +..+||.|+.+|.|.+||+..+....                     
T Consensus       224 ~~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------  279 (555)
T KOG1587|consen  224 LLVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------  279 (555)
T ss_pred             EEEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------------------
Confidence            344666653   23555555678999999999 56888999999999999998776420                     


Q ss_pred             ccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccce-eEEEeecCCCceeeeeecc
Q 012721           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLL  168 (457)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (457)
                      ....-.....|.            .+|+.+.|..+..+.-|++++.||.|..|+++.-.. .........          
T Consensus       280 ~s~ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~----------  337 (555)
T KOG1587|consen  280 PSGLSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK----------  337 (555)
T ss_pred             CcccccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc----------
Confidence            000111223344            899999998766667799999999999997654321 110000000          


Q ss_pred             ccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEc
Q 012721          169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNL  246 (457)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~  246 (457)
                                                            ..+...  ......+++++|.+ +-..++.| .+|.|.-=+.
T Consensus       338 --------------------------------------~~~~~~--~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r  377 (555)
T KOG1587|consen  338 --------------------------------------KHKGQQ--SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR  377 (555)
T ss_pred             --------------------------------------cccccc--cccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence                                                  000000  12234678899977 55677888 9999988444


Q ss_pred             CCCcceeeeeecCC-CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec
Q 012721          247 EISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (457)
Q Consensus       247 ~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (457)
                      ......... -.+. ..+..|.+.|+++.++|-+...+++++ |-+++||.......   ....+             ..
T Consensus       378 ~g~~~~~~~-~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~---Pl~~~-------------~~  439 (555)
T KOG1587|consen  378 KGYTPAPEV-SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS---PLLSL-------------DS  439 (555)
T ss_pred             cCCcccccc-cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC---cchhh-------------hh
Confidence            311111100 0011 135668899999999999956666666 99999998763211   11122             22


Q ss_pred             cccceEEEEEccCCCeE-EEEec-CcEEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721          326 IIASISDIKFANDGQHL-LSRDY-MNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (457)
Q Consensus       326 h~~~v~~~~~s~~g~~l-~s~~~-~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  402 (457)
                      +...|++++|||...-+ +++++ |.|.+||+... ..++.+........               +.+.|++.|+.|++|
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l---------------~~~~~s~~g~~lavG  504 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPAL---------------TRVRWSPNGKLLAVG  504 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccc---------------ceeecCCCCcEEEEe
Confidence            34569999999976554 45554 99999999642 34444444442221               578899999999999


Q ss_pred             eCCCcEEEEecCCC
Q 012721          403 SYSNLLRIFSHGVG  416 (457)
Q Consensus       403 ~~dg~i~iw~~~~~  416 (457)
                      ...|.+++|++...
T Consensus       505 d~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  505 DANGTTHILKLSES  518 (555)
T ss_pred             cCCCcEEEEEcCch
Confidence            99999999999754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.81  E-value=1.6e-19  Score=167.95  Aligned_cols=265  Identities=16%  Similarity=0.205  Sum_probs=196.3

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      .+.|..+|+|+.|...|.++++|+.|..++||..++..                           ++....||.      
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~---------------------------~lAs~rGhs------  232 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR---------------------------CLASCRGHS------  232 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchh---------------------------hhccCCCCc------
Confidence            45699999999999999999999999999999988766                           567889999      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            +.|+.++.  +.++.++++++.|..|++|.+.++..+.+                                   
T Consensus       233 ------~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv-----------------------------------  269 (1113)
T KOG0644|consen  233 ------GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV-----------------------------------  269 (1113)
T ss_pred             ------cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH-----------------------------------
Confidence                  88999999  67777899999999999999998865433                                   


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                +.+|++.|++++|+|-.   .++.||++++||.+ -. . ..+...|..+.+ .
T Consensus       270 --------------------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~-~-~~y~prp~~~~~-~  316 (1113)
T KOG0644|consen  270 --------------------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LE-P-RIYVPRPLKFTE-K  316 (1113)
T ss_pred             --------------------------HhccccceeeeccCccc---cCCCCCceEecccc-cc-c-cccCCCCCCccc-c
Confidence                                      27999999999999965   33499999999988 11 1 112122222222 2


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEE-
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-  345 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~-  345 (457)
                      ..+.++.|...+ .-+++++.|+.-..|.+....        +..               ..+.-+.++.+- .+.+++ 
T Consensus       317 ~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~--------~~~---------------~~lif~t~ssd~~~~~~~ar  372 (1113)
T KOG0644|consen  317 DLVDSILFENNG-DRFLTGSRDGEARNHEFEQLA--------WRS---------------NLLIFVTRSSDLSSIVVTAR  372 (1113)
T ss_pred             cceeeeeccccc-cccccccCCcccccchhhHhh--------hhc---------------cceEEEeccccccccceeee
Confidence            456677788888 889999999998888766521        111               122223333232 344444 


Q ss_pred             ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       346 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      .+-.+++|++.. +.+++...+|...+               +-+.++|= .....+++.||...|||+-.|-.......
T Consensus       373 ~~~~~~vwnl~~-g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~  436 (1113)
T KOG0644|consen  373 NDHRLCVWNLYT-GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI  436 (1113)
T ss_pred             eeeEeeeeeccc-chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec
Confidence            458899999975 88888888888765               57889984 55666899999999999998855555555


Q ss_pred             cCCCcceeeeeccCCcce
Q 012721          425 AGKNENRKPILQAAPRAR  442 (457)
Q Consensus       425 ~~~~~v~~~~~~p~~~~~  442 (457)
                      +| +.+..-+|+++|...
T Consensus       437 gh-~kl~d~kFSqdgts~  453 (1113)
T KOG0644|consen  437 GH-GKLVDGKFSQDGTSI  453 (1113)
T ss_pred             cc-ceeeccccCCCCceE
Confidence            64 445555688886544

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=1.8e-18  Score=156.54  Aligned_cols=224  Identities=16%  Similarity=0.216  Sum_probs=157.2

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|+.+.|.| -|...|+.++.||.|++|.+..+......                                        
T Consensus       628 t~vtDl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~----------------------------------------  666 (1012)
T KOG1445|consen  628 TLVTDLHWDP-FDDERLAVATDDGQINLWRLTANGLPENE----------------------------------------  666 (1012)
T ss_pred             ceeeecccCC-CChHHeeecccCceEEEEEeccCCCCccc----------------------------------------
Confidence            4599999975 57779999999999999999876432211                                        


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                                   ..+..++ ..|...|+++.|+| ....|+++ +|-+|++||+.......        .+.+|.+.|.
T Consensus       667 -------------~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~--------~l~gHtdqIf  724 (1012)
T KOG1445|consen  667 -------------MTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS--------RLVGHTDQIF  724 (1012)
T ss_pred             -------------CCcceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh--------eeccCcCcee
Confidence                         1222222 78999999999999 45677888 99999999999443333        2689999999


Q ss_pred             EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-----
Q 012721          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----  346 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----  346 (457)
                      .++|+|+| +.+++.+.||+|++|+.++++..     +.++  .++.        ...--.+.|..+|+++++.+     
T Consensus       725 ~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~p-----v~Eg--~gpv--------gtRgARi~wacdgr~viv~Gfdk~S  788 (1012)
T KOG1445|consen  725 GIAWSPDG-RRIATVCKDGTLRVYEPRSREQP-----VYEG--KGPV--------GTRGARILWACDGRIVIVVGFDKSS  788 (1012)
T ss_pred             EEEECCCC-cceeeeecCceEEEeCCCCCCCc-----cccC--CCCc--------cCcceeEEEEecCcEEEEecccccc
Confidence            99999999 99999999999999999987532     2222  1110        12345678889999988532     


Q ss_pred             cCcEEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          347 YMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       347 ~~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      ...|.+||...- ..++.+.........              .--.+.+|. -.+++|-.|..|++|.+-..+..+..+.
T Consensus       789 eRQv~~Y~Aq~l~~~pl~t~~lDvaps~--------------LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~  854 (1012)
T KOG1445|consen  789 ERQVQMYDAQTLDLRPLYTQVLDVAPSP--------------LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLA  854 (1012)
T ss_pred             hhhhhhhhhhhccCCcceeeeecccCcc--------------ccccccCCCceEEEecCCCceEEEEEecCCCceeeecc
Confidence            278999998642 244444332221110              112445564 4667888899999999876655555555


Q ss_pred             cCCCcc
Q 012721          425 AGKNEN  430 (457)
Q Consensus       425 ~~~~~v  430 (457)
                      .|..++
T Consensus       855 ~f~sp~  860 (1012)
T KOG1445|consen  855 PFMSPV  860 (1012)
T ss_pred             cccCCC
Confidence            555443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=5.3e-18  Score=152.48  Aligned_cols=267  Identities=13%  Similarity=0.135  Sum_probs=184.8

Q ss_pred             ceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccc
Q 012721           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (457)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (457)
                      .+...++||+            +.|.+|..  .+.|..|++|+.||+|++|.+.+|.++....+  ...|.+++|.+...
T Consensus       391 ~~~lvyrGHt------------g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~  454 (733)
T KOG0650|consen  391 RCALVYRGHT------------GLVRSISV--DPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSD  454 (733)
T ss_pred             eeeeeEeccC------------CeEEEEEe--cCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCC
Confidence            4555678888            89999999  68999999999999999999999988766543  33566666665433


Q ss_pred             cccc-cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-----CCCeEEEEE
Q 012721          172 NFMN-EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DDLRINLWN  245 (457)
Q Consensus       172 ~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-----~d~~i~iwd  245 (457)
                      ..+- .+.... -++.+..                         .+     ..+.--+....|+++     -++.+..|.
T Consensus       455 ~~vLAvA~~~~-~~ivnp~-------------------------~G-----~~~e~~~t~ell~~~~~~~~p~~~~~~W~  503 (733)
T KOG0650|consen  455 LCVLAVAVGEC-VLIVNPI-------------------------FG-----DRLEVGPTKELLASAPNESEPDAAVVTWS  503 (733)
T ss_pred             ceeEEEEecCc-eEEeCcc-------------------------cc-----chhhhcchhhhhhcCCCccCCcccceeec
Confidence            2211 111000 0000000                         00     000000111222221     345566665


Q ss_pred             cCCCcce---eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---CeEEEEEccCCeeeccccccccccccccCc
Q 012721          246 LEISDQC---FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGS  319 (457)
Q Consensus       246 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      -....+.   +.+       .-.|...|..+.|+..| .+|++...+   ..|.|+++...+..    ..|         
T Consensus       504 ~~~~~e~~~~v~~-------~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~PF---------  562 (733)
T KOG0650|consen  504 RASLDELEKGVCI-------VIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SPF---------  562 (733)
T ss_pred             hhhhhhhccceEE-------EEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cch---------
Confidence            4311111   111       23477889999999999 999988654   56888888775422    111         


Q ss_pred             ccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEE
Q 012721          320 KSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  399 (457)
Q Consensus       320 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  399 (457)
                          ....+.|.++.|+|...+|+.++...|++||+.. ..+++.+......+               ..++.+|.|.-|
T Consensus       563 ----~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwi---------------S~msihp~GDnl  622 (733)
T KOG0650|consen  563 ----RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWI---------------SSMSIHPNGDNL  622 (733)
T ss_pred             ----hhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCeee---------------eeeeecCCCCeE
Confidence                2224679999999999999999999999999975 66666665554444               479999999999


Q ss_pred             EEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccc
Q 012721          400 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  446 (457)
Q Consensus       400 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~  446 (457)
                      +.|+.|+.+..+|+.-+.+..+++.-|...+++|+||+.-|..++|.
T Consensus       623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~s  669 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGS  669 (733)
T ss_pred             EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeec
Confidence            99999999999999988788999999999999999999999988854

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=1.4e-17  Score=157.21  Aligned_cols=214  Identities=14%  Similarity=0.140  Sum_probs=146.0

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCC---CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      ..+.+.+|  +|+|+.|+.++.+   ..|.+||+.+++...+...                                   
T Consensus       204 ~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-----------------------------------  246 (429)
T PRK01742        204 QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-----------------------------------  246 (429)
T ss_pred             CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-----------------------------------
Confidence            67899999  7899999887643   4699999987754332110                                   


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEE--EcCCCcceeeeeecCCCcccCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                              .+|   ...++|+|||+.|+.+  .++.+.||  |+. .+...+        +..+
T Consensus       247 ------------------------~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~  290 (429)
T PRK01742        247 ------------------------RGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPSQ--------LTSG  290 (429)
T ss_pred             ------------------------CCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeEe--------eccC
Confidence                                    222   2367999999988875  57766555  554 333332        3445


Q ss_pred             CCceEEEEEecCCccEEEE-EccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          267 TEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~-~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ...+..+.|+|+| +.|+. +..+|...||++......   ...+.              +..  ..+.|+|+|++|+..
T Consensus       291 ~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~---~~~l~--------------~~~--~~~~~SpDG~~ia~~  350 (429)
T PRK01742        291 AGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGG---ASLVG--------------GRG--YSAQISADGKTLVMI  350 (429)
T ss_pred             CCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCC---eEEec--------------CCC--CCccCCCCCCEEEEE
Confidence            5667889999999 65554 446788899987643211   01111              112  357899999999877


Q ss_pred             ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC--CCCceeeEE
Q 012721          346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG--VGSAGGITV  423 (457)
Q Consensus       346 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~--~~~~~~~~~  423 (457)
                      +...+.+||+.. ++.. .+......                ..+.|+|||++|++++.++.+.+|.+.  +| .....+
T Consensus       351 ~~~~i~~~Dl~~-g~~~-~lt~~~~~----------------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l  411 (429)
T PRK01742        351 NGDNVVKQDLTS-GSTE-VLSSTFLD----------------ESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARL  411 (429)
T ss_pred             cCCCEEEEECCC-CCeE-EecCCCCC----------------CCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEc
Confidence            655667799875 4432 22211111                368899999999999999998888863  45 567778


Q ss_pred             ecCCCcceeeeeccCC
Q 012721          424 EAGKNENRKPILQAAP  439 (457)
Q Consensus       424 ~~~~~~v~~~~~~p~~  439 (457)
                      .+|.+.+..++|+|-.
T Consensus       412 ~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        412 PGSDGQVKFPAWSPYL  427 (429)
T ss_pred             cCCCCCCCCcccCCCC
Confidence            8899999999999863

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=1.7e-17  Score=142.00  Aligned_cols=212  Identities=13%  Similarity=0.128  Sum_probs=160.2

Q ss_pred             CccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           27 EELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ..-+|+++|..++|+| +...||+|+.|.+|.||++..+...                    .+-.+++..|.||.    
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------~~ltepvv~L~gH~----  131 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------RDLTEPVVELYGHQ----  131 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------cCcccceEEEeecc----
Confidence            3446999999999999 6688999999999999998766542                    23446788999999    


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                              ..|..|+|+|.. .+.|++++.|.+|.+|++.+|+....                                 
T Consensus       132 --------rrVg~V~wHPtA-~NVLlsag~Dn~v~iWnv~tgeali~---------------------------------  169 (472)
T KOG0303|consen  132 --------RRVGLVQWHPTA-PNVLLSAGSDNTVSIWNVGTGEALIT---------------------------------  169 (472)
T ss_pred             --------eeEEEEeecccc-hhhHhhccCCceEEEEeccCCceeee---------------------------------
Confidence                    889999998744 45899999999999999999875533                                 


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                                   ..|.+.|++++|+.||.+|++. .|+.|+|||.+ .+..+..       -.
T Consensus       170 -----------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr-~~~~v~e-------~~  212 (472)
T KOG0303|consen  170 -----------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR-RGTVVSE-------GV  212 (472)
T ss_pred             -----------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCC-CCcEeee-------cc
Confidence                                         2488899999999999999998 99999999999 5555543       23


Q ss_pred             CCCC-ceEEEEEecCCccEEEEEc---cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          265 DLTE-VITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       265 ~~~~-~i~~v~~~p~~~~~l~~~~---~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                      +|.+ ....+-|-.+| .++.+|.   .+..+-+||..+-+... ....++.              .+.|.---|.+|..
T Consensus       213 ~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elDt--------------SnGvl~PFyD~dt~  276 (472)
T KOG0303|consen  213 AHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI-ALQELDT--------------SNGVLLPFYDPDTS  276 (472)
T ss_pred             cccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcc-eeEEecc--------------CCceEEeeecCCCC
Confidence            3432 34556688888 6555553   57789999987643220 0011111              35677777889888


Q ss_pred             eEEEE--ecCcEEEEeccC
Q 012721          341 HLLSR--DYMNLKLWDIRM  357 (457)
Q Consensus       341 ~l~s~--~~~~i~~wd~~~  357 (457)
                      ++..+  +|+.|+.|.+..
T Consensus       277 ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  277 IVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             EEEEEecCCcceEEEEecC
Confidence            87754  469999999864

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=7.7e-17  Score=151.63  Aligned_cols=309  Identities=15%  Similarity=0.093  Sum_probs=200.9

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcE
Q 012721           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (457)
Q Consensus        37 ~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V  116 (457)
                      .-.||+|+++++.... ..|+||...+++                           +++.+.+|.            .++
T Consensus        21 ~avfSnD~k~l~~~~~-~~V~VyS~~Tg~---------------------------~i~~l~~~~------------a~l   60 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCTG-NFVKVYSTATGE---------------------------CITSLEDHT------------APL   60 (792)
T ss_pred             ccccccCCcEEEEeeC-CEEEEEecchHh---------------------------hhhhccccc------------Ccc
Confidence            4568999998887665 479999999887                           456788898            889


Q ss_pred             EEEEEEecCCC-CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeee--eeccccccccccCCCCCceeccCCccccc
Q 012721          117 NRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE--NTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       117 ~~v~~~~s~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..+.+.|++.. .++.+++.||.|++||...+.+...........+...  ++....  ................+....
T Consensus        61 ~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s--~~~~~s~~~~~~~~~~s~~~~  138 (792)
T KOG1963|consen   61 TSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADIS--ANVYVSVEDYSILTTFSKKLS  138 (792)
T ss_pred             ceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCcc--ceeEeecccceeeeecccccc
Confidence            99999876654 5778999999999999999988877765554332222  111111  000000011111111111112


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v  273 (457)
                      ...+-..+.+...  ....++.+|.. -.++.+++.|++.+...+..+.+|+.....+.....    ..-..|...+++.
T Consensus       139 ~q~~~~~~~t~~~--~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~----~~~~~Htf~~t~~  211 (792)
T KOG1963|consen  139 KQSSRFVLATFDS--AKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSR----DITVHHTFNITCV  211 (792)
T ss_pred             cceeeeEeeeccc--cchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeeccc----hhhhhhcccceeE
Confidence            2222222221110  01111123322 357888888888888888899999988433111111    1124577779999


Q ss_pred             EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEE
Q 012721          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL  352 (457)
Q Consensus       274 ~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~  352 (457)
                      +++|++ +++|+|..||.|.+|.--..+.             .......+.-|...|++++|+++|.+|++|+. +.+-+
T Consensus       212 ~~spn~-~~~Aa~d~dGrI~vw~d~~~~~-------------~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~  277 (792)
T KOG1963|consen  212 ALSPNE-RYLAAGDSDGRILVWRDFGSSD-------------DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL  277 (792)
T ss_pred             Eecccc-ceEEEeccCCcEEEEecccccc-------------ccccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence            999999 9999999999999996433111             11112335567789999999999999999986 99999


Q ss_pred             EeccCCCCceeEeee-ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721          353 WDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  427 (457)
Q Consensus       353 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  427 (457)
                      |.+.++ +  +++-. -...               +..+.+|||+.+.+...+|+.|.+-.+.+. ....++++-.
T Consensus       278 Wq~~T~-~--kqfLPRLgs~---------------I~~i~vS~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~  334 (792)
T KOG1963|consen  278 WQLETG-K--KQFLPRLGSP---------------ILHIVVSPDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIK  334 (792)
T ss_pred             EeecCC-C--cccccccCCe---------------eEEEEEcCCCCeEEEEecCceEEEEeccch-hhhhhccCcc
Confidence            999873 3  22221 1222               268999999999999999999999998766 4444444443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.79  E-value=3.9e-17  Score=136.30  Aligned_cols=258  Identities=12%  Similarity=0.165  Sum_probs=188.0

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      .++|+|.+|++|+..+|++.....|.||.....+                        .++...+++.|+          
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------~w~~~htls~Hd----------   55 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------LWEPAHTLSEHD----------   55 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------CceeceehhhhC----------
Confidence            4699999999999999999999999999987765                        356778889998          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEe-cccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                        ..|+.|.|  ++..+.|++++.|..-++|.. ..++......                                    
T Consensus        56 --~~vtgvdW--ap~snrIvtcs~drnayVw~~~~~~~Wkptlv------------------------------------   95 (361)
T KOG1523|consen   56 --KIVTGVDW--APKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV------------------------------------   95 (361)
T ss_pred             --cceeEEee--cCCCCceeEccCCCCccccccCCCCeecccee------------------------------------
Confidence              88999999  678889999999999999998 5555543322                                    


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                            + ..++..++++.|+|+++.|++| .-..|.||-++ .+...-+-   .+.-+.+...
T Consensus        96 ----------------------L-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E-~ENdWWVs---KhikkPirSt  148 (361)
T KOG1523|consen   96 ----------------------L-LRINRAATCVKWSPKENKFAVGSGARLISVCYYE-QENDWWVS---KHIKKPIRST  148 (361)
T ss_pred             ----------------------E-EEeccceeeEeecCcCceEEeccCccEEEEEEEe-cccceehh---hhhCCccccc
Confidence                                  1 4567789999999999999999 88999999888 33332110   0113456788


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCc
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  349 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~  349 (457)
                      |++++|+|++ -+|+.|+.|+..+++..--..        .+.                       -|..          
T Consensus       149 v~sldWhpnn-VLlaaGs~D~k~rVfSayIK~--------Vde-----------------------kpap----------  186 (361)
T KOG1523|consen  149 VTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKG--------VDE-----------------------KPAP----------  186 (361)
T ss_pred             eeeeeccCCc-ceecccccCcceeEEEEeeec--------ccc-----------------------CCCC----------
Confidence            9999999998 999999999999998754321        111                       0100          


Q ss_pred             EEEEeccCC-CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721          350 LKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  428 (457)
Q Consensus       350 i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  428 (457)
                       .-|+-+++ ++++.++....+.+               ..+.|+|+|..|+-.+.|+.+.+=|.....+..+......-
T Consensus       187 -~pWgsk~PFG~lm~E~~~~ggwv---------------h~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~l  250 (361)
T KOG1523|consen  187 -TPWGSKMPFGQLMSEASSSGGWV---------------HGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQL  250 (361)
T ss_pred             -CCCccCCcHHHHHHhhccCCCce---------------eeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccC
Confidence             02333221 33444443333333               57889999999999999999988887766444555544457


Q ss_pred             cceeeeeccCCcceeccccc
Q 012721          429 ENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       429 ~v~~~~~~p~~~~~~~~~~~  448 (457)
                      |..++.|-.+......|.++
T Consensus       251 P~ls~~~ise~~vv~ag~~c  270 (361)
T KOG1523|consen  251 PLLSVSWISENSVVAAGYDC  270 (361)
T ss_pred             CceeeEeecCCceeecCCCC
Confidence            77777777766666666554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=2.4e-15  Score=137.86  Aligned_cols=259  Identities=11%  Similarity=0.113  Sum_probs=150.2

Q ss_pred             CcEEEEEEEecCCCCEEEEee-CCCeEEEEEec-ccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          114 EKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                      +....+++  +|++++|++++ .++.|.+|++. ++..............+.+++.+....++....             
T Consensus        35 ~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~-------------   99 (330)
T PRK11028         35 GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY-------------   99 (330)
T ss_pred             CCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc-------------
Confidence            34667888  78998887664 57889999997 344433322222223344444433222222111             


Q ss_pred             cccceEEEeccCccc-cccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          192 ENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                      .++.+.+|+++.... ...+...  .+.....+++++|++++++++  .++.|.+||++..+...... ....... ...
T Consensus       100 ~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~~-~g~  175 (330)
T PRK11028        100 NANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTTV-EGA  175 (330)
T ss_pred             CCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceecC-CCC
Confidence            145788888863211 1122211  223346778899999988665  78999999998433221100 0000011 123


Q ss_pred             ceEEEEEecCCccEEEEEcc-CCeEEEEEccCC--eeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          269 VITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~-dg~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ....+.|+|+| ++++++.. ++.|.+||+...  +..  ....+..   .+..   . .+......+.++|+|++++++
T Consensus       176 ~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~--~~~~~~~---~p~~---~-~~~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        176 GPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIE--CVQTLDM---MPAD---F-SDTRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             CCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEE--EEEEEec---CCCc---C-CCCccceeEEECCCCCEEEEe
Confidence            45789999999 77776665 899999999742  211  0111111   0000   0 011234468999999999987


Q ss_pred             e--cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecC
Q 012721          346 D--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG  414 (457)
Q Consensus       346 ~--~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~  414 (457)
                      .  ++.|.+|++...+..+. +..+.....            ....+.++|||++|++++. +++|.+|+++
T Consensus       246 ~~~~~~I~v~~i~~~~~~~~-~~~~~~~~~------------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        246 DRTASLISVFSVSEDGSVLS-FEGHQPTET------------QPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             cCCCCeEEEEEEeCCCCeEE-EeEEEeccc------------cCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            5  38999999965332222 222211000            0047999999999998776 8999999885

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=2.3e-15  Score=143.44  Aligned_cols=268  Identities=23%  Similarity=0.389  Sum_probs=195.4

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ...|...|.++.|.+.+..++.++.|+.+.+|+......                          .+..+.++..     
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~-----  109 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHD-----  109 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCC-----
Confidence            456899999999999999999999999999999886641                          2334444330     


Q ss_pred             ccccccCcEEEEEEEecCCCC-EEEEeeC-CCeEEEEEecc-cceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          108 KSLEIEEKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~-~l~s~s~-d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                            ..+..+.+. .+++. .++..+. |+.+.+|+... ......                                
T Consensus       110 ------~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------------------------------  150 (466)
T COG2319         110 ------SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRT--------------------------------  150 (466)
T ss_pred             ------CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEE--------------------------------
Confidence                  246777775 56666 4555444 99999999987 322221                                


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCc
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                                                   ...|...|..++|+|++..++++ . |+.+++|++. .......       
T Consensus       151 -----------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------  193 (466)
T COG2319         151 -----------------------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLST-------  193 (466)
T ss_pred             -----------------------------EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEe-------
Confidence                                         15788899999999999988887 5 9999999998 4444443       


Q ss_pred             ccCCCCceEEEEEecCCcc-EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721          263 MDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~  341 (457)
                      +.+|...+.+++|+|++ . .+++++.|+.|++||...+.....   .             +.+|.... -..|+|++.+
T Consensus       194 ~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~~~---~-------------~~~~~~~~-~~~~~~~~~~  255 (466)
T COG2319         194 LAGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLLRS---T-------------LSGHSDSV-VSSFSPDGSL  255 (466)
T ss_pred             eccCCCceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEEee---e-------------cCCCCcce-eEeECCCCCE
Confidence            45689999999999998 6 555559999999998875543210   1             23344443 3389999988


Q ss_pred             EEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee
Q 012721          342 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  420 (457)
Q Consensus       342 l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~  420 (457)
                      +++++ ++.+++|++......+..+..|...+               .++.|+|++..+++++.|+.+.+|++.+.. ..
T Consensus       256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~  319 (466)
T COG2319         256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGTVRLWDLETGK-LL  319 (466)
T ss_pred             EEEecCCCcEEEeeecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eE
Confidence            88665 49999999986333244444454433               578999998888889999999999988873 33


Q ss_pred             eEE--ecCCCcceeeeec
Q 012721          421 ITV--EAGKNENRKPILQ  436 (457)
Q Consensus       421 ~~~--~~~~~~v~~~~~~  436 (457)
                      ...  ..|...+..+.+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~  337 (466)
T COG2319         320 SSLTLKGHEGPVSSLSFS  337 (466)
T ss_pred             EEeeecccCCceEEEEEC
Confidence            333  4788888999883

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=1.8e-16  Score=136.44  Aligned_cols=268  Identities=16%  Similarity=0.261  Sum_probs=174.8

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      -+|+.+|+++.|+|+|++||+|+.+|.|.+|....-...    .+..       ..+...+.+.....+.+|.       
T Consensus        62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~----~~d~-------e~~~~ke~w~v~k~lr~h~-------  123 (434)
T KOG1009|consen   62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF----DADT-------EADLNKEKWVVKKVLRGHR-------  123 (434)
T ss_pred             cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc----cccc-------hhhhCccceEEEEEecccc-------
Confidence            359999999999999999999999999999997642110    0000       0001223566777888998       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           +.|..++|  ++++.++++++.|.++++||+..|......                                   
T Consensus       124 -----~diydL~W--s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~-----------------------------------  161 (434)
T KOG1009|consen  124 -----DDIYDLAW--SPDSNFLVSGSVDNSVRLWDVHAGQLLAIL-----------------------------------  161 (434)
T ss_pred             -----cchhhhhc--cCCCceeeeeeccceEEEEEeccceeEeec-----------------------------------
Confidence                 77999999  789999999999999999999998776542                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeee---cCCCccc
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD---MKPSNMD  264 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~---~~~~~~~  264 (457)
                                                .+|...+..++|.|-++++++= .|...+.+.+.. .+....+.   +......
T Consensus       162 --------------------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~  214 (434)
T KOG1009|consen  162 --------------------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFN  214 (434)
T ss_pred             --------------------------cccccccceeecchhhhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccC
Confidence                                      5788889999999988888885 676666666552 22111111   1100000


Q ss_pred             C---------C----CCceEEEEEecCCccEEEEEcc----CCeE-----EEEEccCCeeeccccccccccccccCcccc
Q 012721          265 D---------L----TEVITSAEFHPIYCNLLAYSSS----RGFV-----RLVDMRQSALCDHSARILRDAAESHGSKSF  322 (457)
Q Consensus       265 ~---------~----~~~i~~v~~~p~~~~~l~~~~~----dg~i-----~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (457)
                      +         |    ......++|+|+| .++++.+.    .+.+     ++|+-..   ......             .
T Consensus       215 ~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~---l~rP~~-------------~  277 (434)
T KOG1009|consen  215 EREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKD---LKRPAA-------------R  277 (434)
T ss_pred             CCCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeecccc---ccCcee-------------e
Confidence            0         1    1234567899999 88877642    2222     2332211   111001             1


Q ss_pred             eeccccceEEEEEcc------------------CCCeEEEEecCcEEEEeccCCCCceeEee-eccccccccccccCCCC
Q 012721          323 FTEIIASISDIKFAN------------------DGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDS  383 (457)
Q Consensus       323 ~~~h~~~v~~~~~s~------------------~g~~l~s~~~~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  383 (457)
                      +.....++..+.|+|                  -+..+|.++.+.|++||.++ ..++.... .|-..+           
T Consensus       278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~-~~P~~~v~nihy~~i-----------  345 (434)
T KOG1009|consen  278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT-LEPLAVVDNIHYSAI-----------  345 (434)
T ss_pred             cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc-ccceEEEeeeeeeee-----------
Confidence            111122334444443                  23345567779999999976 55555433 354443           


Q ss_pred             ccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          384 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       384 ~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                          ++++|++||.+|+..+.||...+--+...
T Consensus       346 ----TDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  346 ----TDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             ----cceeecCCCcEEEEeccCCceEEEEEcch
Confidence                79999999999999999998877776655

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=1.9e-17  Score=147.06  Aligned_cols=207  Identities=16%  Similarity=0.268  Sum_probs=158.5

Q ss_pred             CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEec
Q 012721           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (457)
Q Consensus        45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s  124 (457)
                      ..|+.++.||.+.|.+-...-                            ......|.            +.|.+-.|  +
T Consensus        76 d~~~i~s~DGkf~il~k~~rV----------------------------E~sv~AH~------------~A~~~gRW--~  113 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSARV----------------------------ERSISAHA------------AAISSGRW--S  113 (737)
T ss_pred             ceEEEEcCCceEEEecccchh----------------------------hhhhhhhh------------hhhhhccc--C
Confidence            567888899999888754332                            23566777            88999999  7


Q ss_pred             CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCc
Q 012721          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (457)
Q Consensus       125 ~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  204 (457)
                      ++|.-|+++++||.|++|.-.......                                                     
T Consensus       114 ~dGtgLlt~GEDG~iKiWSrsGMLRSt-----------------------------------------------------  140 (737)
T KOG1524|consen  114 PDGAGLLTAGEDGVIKIWSRSGMLRST-----------------------------------------------------  140 (737)
T ss_pred             CCCceeeeecCCceEEEEeccchHHHH-----------------------------------------------------
Confidence            999999999999999999865431110                                                     


Q ss_pred             cccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721          205 VHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (457)
Q Consensus       205 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~  284 (457)
                               +.....+|+|++|.|+.+.++.|..+.+.|=-+......++        ++.|.+-|.++.|++.. ++++
T Consensus       141 ---------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~--------WkAHDGiiL~~~W~~~s-~lI~  202 (737)
T KOG1524|consen  141 ---------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR--------WRAHDGLVLSLSWSTQS-NIIA  202 (737)
T ss_pred             ---------HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE--------EeccCcEEEEeecCccc-ccee
Confidence                     12345589999999999999999777777766663344333        68999999999999998 9999


Q ss_pred             EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeE
Q 012721          285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT  364 (457)
Q Consensus       285 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~  364 (457)
                      +|++|-..++||-...       ..|..           ..|.-+|++++|.|+ +.++.++.+++++=..+        
T Consensus       203 sgGED~kfKvWD~~G~-------~Lf~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~--------  255 (737)
T KOG1524|consen  203 SGGEDFRFKIWDAQGA-------NLFTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTARFSSPR--------  255 (737)
T ss_pred             ecCCceeEEeecccCc-------ccccC-----------Chhccceeeeeeccc-cceeeeeeeeeeecCCC--------
Confidence            9999999999998764       23333           346679999999999 67777776666621111        


Q ss_pred             eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721          365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  410 (457)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i  410 (457)
                          .+.               |+.++||+||..++.|+..|.+.+
T Consensus       256 ----~GS---------------ifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  256 ----VGS---------------IFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ----ccc---------------eEEEEEcCCCceeeccccCceEEE
Confidence                111               268999999999999999998755

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.77  E-value=2.9e-17  Score=143.23  Aligned_cols=258  Identities=14%  Similarity=0.137  Sum_probs=171.8

Q ss_pred             cccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..|..+|.++.|+|. ...+++.+.||+|++-|+++....                         .+..+....      
T Consensus       231 ~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-------------------------~v~s~~~d~------  279 (498)
T KOG4328|consen  231 TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-------------------------EVLSLDTDN------  279 (498)
T ss_pred             ccCCccccceEecCCChhheeeeccCceeeeeeecchhhH-------------------------HHhhcCccc------
Confidence            348999999999994 478889999999999999876531                         112222111      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            .....+.|  +.+...++.+..=|...+||.+++.....                                   
T Consensus       280 ------~~fs~~d~--~~e~~~vl~~~~~G~f~~iD~R~~~s~~~-----------------------------------  316 (498)
T KOG4328|consen  280 ------IWFSSLDF--SAESRSVLFGDNVGNFNVIDLRTDGSEYE-----------------------------------  316 (498)
T ss_pred             ------eeeeeccc--cCCCccEEEeecccceEEEEeecCCccch-----------------------------------
Confidence                  45667777  45555677777667899999987643211                                   


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceee-eeecCCCccc
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFN-IVDMKPSNMD  264 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~  264 (457)
                                  .             +.-|...|.+++++|.. .+|++| .|++++|||++.-..... +     ....
T Consensus       317 ------------~-------------~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~-----lst~  366 (498)
T KOG4328|consen  317 ------------N-------------LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF-----LSTL  366 (498)
T ss_pred             ------------h-------------hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcc-----eecc
Confidence                        0             14577799999999954 567778 999999999983222111 1     1245


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      .|...|.+..|+|.+ -.|++.+.|..|+|||..--........++.. ....      .-|. ......|.|+..++++
T Consensus       367 ~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H-n~~t------~Rwl-T~fKA~W~P~~~li~v  437 (498)
T KOG4328|consen  367 PHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH-NNRT------GRWL-TPFKAAWDPDYNLIVV  437 (498)
T ss_pred             cccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCCccceeec-cCcc------cccc-cchhheeCCCccEEEE
Confidence            699999999999999 45999999999999998411000011111111 0000      0011 2234679999999999


Q ss_pred             Eec-CcEEEEeccCCCCceeEeeeccc-cccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEEecC
Q 012721          345 RDY-MNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHG  414 (457)
Q Consensus       345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw~~~  414 (457)
                      |.. ..|-++|-.. ++.+..+..... .+.              --..|+|-+. +++.++..|.|+||--+
T Consensus       438 g~~~r~IDv~~~~~-~q~v~el~~P~~~tI~--------------~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  438 GRYPRPIDVFDGNG-GQMVCELHDPESSTIP--------------SVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             eccCcceeEEcCCC-CEEeeeccCccccccc--------------cceeecccccceeccCCccceEEEEecC
Confidence            987 8899999863 665666544332 221              1368999888 45555567889998654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=9.1e-17  Score=134.24  Aligned_cols=244  Identities=16%  Similarity=0.189  Sum_probs=172.3

Q ss_pred             cccCCceEEEEEC-------CCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc--
Q 012721           29 LQDVDIVSAIEFD-------KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS--   99 (457)
Q Consensus        29 ~~h~~~V~~~~~s-------~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   99 (457)
                      .+..+.|+..+|-       |+..++|+.+.+.-|.+||.-+++..                           ..+++  
T Consensus       101 ~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr---------------------------aSy~~yd  153 (406)
T KOG2919|consen  101 YQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR---------------------------ASYRAYD  153 (406)
T ss_pred             eccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccc---------------------------cchhhhh
Confidence            3456778888885       67789999999999999999988753                           22222  


Q ss_pred             CCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEe-cccceeEEEeecCCCceeeeeeccccccccccCC
Q 012721          100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (457)
Q Consensus       100 h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (457)
                      |..|+         .+-.+++|  ++||..|++| ....|+++|+ +.|+.-........                    
T Consensus       154 h~de~---------taAhsL~F--s~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~--------------------  201 (406)
T KOG2919|consen  154 HQDEY---------TAAHSLQF--SPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK--------------------  201 (406)
T ss_pred             hHHhh---------hhheeEEe--cCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc--------------------
Confidence            22211         34578999  8999887755 5678999998 44433222110000                    


Q ss_pred             CCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeee
Q 012721          179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIV  256 (457)
Q Consensus       179 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  256 (457)
                               +                         ..+..+-+.|++|+| +.+.++.| ....+-||.-. ......+ 
T Consensus       202 ---------~-------------------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~pl~l-  245 (406)
T KOG2919|consen  202 ---------G-------------------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRRPLQL-  245 (406)
T ss_pred             ---------c-------------------------cccccceeeeeeccCCCCcceeeecccceeeeEecC-CCCceee-
Confidence                     0                         035567789999999 45588888 88999998877 4555554 


Q ss_pred             ecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceecccc-ceEEE-
Q 012721          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDI-  333 (457)
Q Consensus       257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~-  333 (457)
                            +.+|.+.|+.+.|.++| +.|.+|. .|..|..||+|.....   +..+..             |.. .-..| 
T Consensus       246 ------lggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~p---v~~L~r-------------hv~~TNQRI~  302 (406)
T KOG2919|consen  246 ------LGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDP---VYALER-------------HVGDTNQRIL  302 (406)
T ss_pred             ------ecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccch---hhhhhh-------------hccCccceEE
Confidence                  57899999999999999 8888877 5788999999985421   111111             111 11233 


Q ss_pred             -EEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721          334 -KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  405 (457)
Q Consensus       334 -~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  405 (457)
                       ...|++++|++|+ +|.|++||++..+..+..+..+...+               ..++++|--.++|+++..
T Consensus       303 FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~v---------------NgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  303 FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTV---------------NGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccc---------------cceecCcccceeeeccCc
Confidence             4468999999995 69999999987677777777776654               578999987777777653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=8.6e-16  Score=144.70  Aligned_cols=302  Identities=15%  Similarity=0.208  Sum_probs=207.7

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      .+.|+-.++|.++||+++++|+|..||.|.+|.--..+.                       .....+.+.-|.      
T Consensus       201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~------  251 (792)
T KOG1963|consen  201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHH------  251 (792)
T ss_pred             hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecc------
Confidence            455888899999999999999999999999997433111                       112345677787      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            +.|++++|  +++|.+|++|+..+.+.+|.+.+++.+.+                                   
T Consensus       252 ------~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqfL-----------------------------------  288 (792)
T KOG1963|consen  252 ------DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQFL-----------------------------------  288 (792)
T ss_pred             ------cccceeEE--ecCCceEeecccceEEEEEeecCCCcccc-----------------------------------
Confidence                  77999999  78999999999999999999998863322                                   


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCC---Ccc
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP---SNM  263 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~  263 (457)
                                                 ..-..+|..+.++||+.+.+.. .|+.|.+...........+-.+++   ..-
T Consensus       289 ---------------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k  341 (792)
T KOG1963|consen  289 ---------------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK  341 (792)
T ss_pred             ---------------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence                                       3455689999999999999998 999999987742221111111111   011


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      ....+-.+.++++|.- +.++..+..|.|.+||+.+.....+ ..+...+....     ...+.-.+++++.+-.|.+++
T Consensus       342 ~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~-~~v~~~n~~~~-----~~n~~v~itav~~~~~gs~ma  414 (792)
T KOG1963|consen  342 TRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYK-LQVCDENYSDG-----DVNIQVGITAVARSRFGSWMA  414 (792)
T ss_pred             ccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeee-EEEEeecccCC-----cceeEEeeeeehhhccceEEE
Confidence            2235667888999965 7888899999999999988764421 11111100000     013345688888888899999


Q ss_pred             EEe---------c--CcEEEEeccCCCCc---ee-EeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCc
Q 012721          344 SRD---------Y--MNLKLWDIRMDSTP---VA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNL  407 (457)
Q Consensus       344 s~~---------~--~~i~~wd~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~  407 (457)
                      +..         +  -.+++|......+.   .. ....|.....              ..+..++... ..++++.||.
T Consensus       415 T~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v--------------at~~~~~~rs~~~vta~~dg~  480 (792)
T KOG1963|consen  415 TLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV--------------ATIFLNPTRSVRCVTASVDGD  480 (792)
T ss_pred             EeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE--------------EEEEecCcccceeEEeccCCe
Confidence            763         1  35788987542221   11 2223444321              2333344433 8999999999


Q ss_pred             EEEEecCCC---------CceeeEEecCCCcceeeeeccCCcceecccccc
Q 012721          408 LRIFSHGVG---------SAGGITVEAGKNENRKPILQAAPRARRSSLSNL  449 (457)
Q Consensus       408 i~iw~~~~~---------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~  449 (457)
                      ++||-+...         -.+...-..|..+++..+|+.||...+.|+++.
T Consensus       481 ~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~  531 (792)
T KOG1963|consen  481 FKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDT  531 (792)
T ss_pred             EEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCE
Confidence            999998332         234445556899999999999998888876653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.5e-17  Score=144.74  Aligned_cols=294  Identities=16%  Similarity=0.178  Sum_probs=211.2

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      .-.|.+-|..|.|+..|..|++|+.|..|.+||...+...                          +.-..||.      
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~------  185 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHC------  185 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--------------------------cccccccc------
Confidence            3459999999999999999999999999999999877642                          22335677      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccc-ceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                            ..|..-.|.|..+...+++++.||.+++=.+... .+....                                 
T Consensus       186 ------~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~---------------------------------  226 (559)
T KOG1334|consen  186 ------NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK---------------------------------  226 (559)
T ss_pred             ------cchhhhhccCCCCCcCceeccccCceeeeeeccccceecce---------------------------------
Confidence                  6788888998888889999999999998765432 221111                                 


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                                .+..|.++|..++.-|+. .-|.++ .|+.+.-+|++ .......+..+    +
T Consensus       227 --------------------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr-~~~pa~~~~cr----~  275 (559)
T KOG1334|consen  227 --------------------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR-QDVPAEKFVCR----E  275 (559)
T ss_pred             --------------------------ecccccCccceeeecCCCCCcccccccccceeeeeec-cCCccceeeee----c
Confidence                                      115788999999998865 446666 99999999998 44333332211    2


Q ss_pred             CCCC---ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeec--cccccccccccccCcccceeccccceEEEEEccC-
Q 012721          265 DLTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD--HSARILRDAAESHGSKSFFTEIIASISDIKFAND-  338 (457)
Q Consensus       265 ~~~~---~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-  338 (457)
                      .+..   ....++.+|..+..+++|+.|..+++||.+.-....  ..+..|..|+       ......-.|++++|+.+ 
T Consensus       276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h-------l~~d~~v~ITgl~Ysh~~  348 (559)
T KOG1334|consen  276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH-------LVEDDPVNITGLVYSHDG  348 (559)
T ss_pred             cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc-------ccccCcccceeEEecCCc
Confidence            2222   567889999886799999999999999988642210  0011111100       01112356999999965 


Q ss_pred             CCeEEEEecCcEEEEeccCC-C----------CceeE-eeeccccccccccccCCCCccccceE-EEcCCCcEEEEEeCC
Q 012721          339 GQHLLSRDYMNLKLWDIRMD-S----------TPVAT-FKIHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYS  405 (457)
Q Consensus       339 g~~l~s~~~~~i~~wd~~~~-~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~s~~~d  405 (457)
                      +.+|++-.|-.|+++.-.+. +          ..+.. +++|.+...+             -.+ -|-|...|+++|++-
T Consensus       349 sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV-------------KgVNFfGPrsEyVvSGSDC  415 (559)
T KOG1334|consen  349 SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV-------------KGVNFFGPRSEYVVSGSDC  415 (559)
T ss_pred             cceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc-------------ceeeeccCccceEEecCcc
Confidence            46666777888999965431 1          12233 7788765421             234 367889999999999


Q ss_pred             CcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       406 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      |.|.||+-.++ +.+..+++....|+|+.-||--|-.++
T Consensus       416 GhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAs  453 (559)
T KOG1334|consen  416 GHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLAS  453 (559)
T ss_pred             ceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhc
Confidence            99999999988 778888998889999999999988776

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=6.7e-15  Score=125.47  Aligned_cols=159  Identities=14%  Similarity=0.181  Sum_probs=120.3

Q ss_pred             CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc--cCCeEEEEE
Q 012721          219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVD  296 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~lwd  296 (457)
                      .+|.++.++  -+.|+.+-...|+|||++ .-+.+.+++    ....+...+.++++++.+ .+++.-+  ..|.|.+||
T Consensus        88 t~IL~VrmN--r~RLvV~Lee~IyIydI~-~MklLhTI~----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   88 TSILAVRMN--RKRLVVCLEESIYIYDIK-DMKLLHTIE----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             CceEEEEEc--cceEEEEEcccEEEEecc-cceeehhhh----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEE
Confidence            368888886  557888833449999999 444444432    123455667777777776 6887754  468999999


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc-EEEEeccCCCCceeEeeeccccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN-LKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~-i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      ..+-+..    .             .+..|.+.+.+++|+++|.+||++++ |+ |||+.+.. ++.+.+++.....+  
T Consensus       160 ~~nl~~v----~-------------~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~--  219 (391)
T KOG2110|consen  160 TINLQPV----N-------------TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPV--  219 (391)
T ss_pred             cccceee----e-------------EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceee--
Confidence            8875322    2             24568899999999999999999998 54 69999975 88888887654433  


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                                 .+.+++|+||+++|++.+..++|++|.+...
T Consensus       220 -----------~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  220 -----------SIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             -----------EEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence                       2369999999999999999999999999865

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=7e-16  Score=127.15  Aligned_cols=209  Identities=9%  Similarity=0.170  Sum_probs=155.3

Q ss_pred             ccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ..++..++++..|+. +-++|.+++-|-+..|||++++..                        +...++|-+|+     
T Consensus       146 ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------------------~~vkTQLIAHD-----  196 (364)
T KOG0290|consen  146 NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------------------GTVKTQLIAHD-----  196 (364)
T ss_pred             ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc------------------------cceeeEEEecC-----
Confidence            345788999999998 668999999999999999998742                        23456788898     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ..|..|+|. ...-+.|++.+.||.+|++|++..+...++- +.                             
T Consensus       197 -------KEV~DIaf~-~~s~~~FASvgaDGSvRmFDLR~leHSTIIY-E~-----------------------------  238 (364)
T KOG0290|consen  197 -------KEVYDIAFL-KGSRDVFASVGADGSVRMFDLRSLEHSTIIY-ED-----------------------------  238 (364)
T ss_pred             -------cceeEEEec-cCccceEEEecCCCcEEEEEecccccceEEe-cC-----------------------------
Confidence                   789999995 2345689999999999999998765433221 10                             


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                                                  ..-..+...++|++ |-+++|+ + +...|.|.|++.....+.       .+
T Consensus       239 ----------------------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva-------~L  283 (364)
T KOG0290|consen  239 ----------------------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA-------RL  283 (364)
T ss_pred             ----------------------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee-------hh
Confidence                                        11144677889987 4566776 3 678899999995555443       47


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCee--eccccccccccccccCcccceeccccceEEEEEcc-CCC
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQ  340 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~  340 (457)
                      .+|.+.|..++|.|..+..|++++.|..+.+||+.+.-.  ....+..+.              -.+.|+.+.|++ .+.
T Consensus       284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--------------a~~EVNqi~Ws~~~~D  349 (364)
T KOG0290|consen  284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--------------AGGEVNQIQWSSSQPD  349 (364)
T ss_pred             hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--------------ccceeeeeeecccCCC
Confidence            899999999999999888999999999999999987422  111111111              246799999996 467


Q ss_pred             eEEEEecCcEEE
Q 012721          341 HLLSRDYMNLKL  352 (457)
Q Consensus       341 ~l~s~~~~~i~~  352 (457)
                      .++.+.++++.+
T Consensus       350 wiai~~~kklei  361 (364)
T KOG0290|consen  350 WIAICFGKKLEI  361 (364)
T ss_pred             EEEEEecCeeeE
Confidence            888776555443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.7e-16  Score=141.58  Aligned_cols=240  Identities=20%  Similarity=0.274  Sum_probs=160.1

Q ss_pred             CccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      +..+|++-|.|++|+.+|.+||+|+.|-.+.|||.-..+.                          ....-.||.     
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--------------------------lhsI~TgHt-----   93 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--------------------------LHSISTGHT-----   93 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcce--------------------------eeeeecccc-----
Confidence            4566999999999999999999999999999999874443                          223346788     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             +.|.++.|.|..++.++++|+.|..|+++|+...+....-.                +               
T Consensus        94 -------aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~----------------~---------------  135 (758)
T KOG1310|consen   94 -------ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH----------------G---------------  135 (758)
T ss_pred             -------cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc----------------C---------------
Confidence                   88999999998888899999999999999987532111000                0               


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCC--Cc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKP--SN  262 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~~  262 (457)
                                         .......+ ..|...|..++..|++ ..+.++ .||+|+-+|++..-.+-.-.+...  .+
T Consensus       136 -------------------~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n  195 (758)
T KOG1310|consen  136 -------------------MEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN  195 (758)
T ss_pred             -------------------ccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence                               00111111 6789999999999988 677777 999999999984332221110000  01


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccccccc----Ccccceeccc-----------
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEII-----------  327 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~-----------  327 (457)
                      +...--...|+..+|..+.+|++|+.|--.++||.+..........++..  ..|    ....+..+|.           
T Consensus       196 y~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~--~pp~~~~cv~yf~p~hlkn~~gn~~~~~  273 (758)
T KOG1310|consen  196 YNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNT--CPPKDCRCVRYFSPGHLKNSQGNLDRYI  273 (758)
T ss_pred             hchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccC--CCCcccchhheecCccccCcccccccce
Confidence            12222456789999999899999999999999996543211110011110  000    0001111121           


Q ss_pred             cceEEEEEccCCCeEEEE-ecCcEEEEeccC
Q 012721          328 ASISDIKFANDGQHLLSR-DYMNLKLWDIRM  357 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~  357 (457)
                      ..++-++|+|+|.-|+.. +...|+++|+..
T Consensus       274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             eeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence            225678999999776654 447899999864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.2e-16  Score=143.17  Aligned_cols=256  Identities=15%  Similarity=0.114  Sum_probs=170.8

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      +.|..+.|  .+....|++++.|+++++|+++......                                          
T Consensus       295 d~ir~l~~--~~sep~lit~sed~~lk~WnLqk~~~s~------------------------------------------  330 (577)
T KOG0642|consen  295 DCIRALAF--HPSEPVLITASEDGTLKLWNLQKAKKSA------------------------------------------  330 (577)
T ss_pred             hhhhhhhc--CCCCCeEEEeccccchhhhhhcccCCcc------------------------------------------
Confidence            77899999  4566689999999999999994311000                                          


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeec--CCCcccCCCCce
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLTEVI  270 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i  270 (457)
                                ....+++.++ .+|.++|.|+++.++++.+++| .||+|+.|++..........+.  -...+.||.+.+
T Consensus       331 ----------~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdav  399 (577)
T KOG0642|consen  331 ----------EKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAV  399 (577)
T ss_pred             ----------ccceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccce
Confidence                      0111333334 7999999999999999999999 9999999977632222222110  113478999999


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cC
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YM  348 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~  348 (457)
                      +.+++++.. ..|++++.||++++|+......     .++.. .         .. .+.-.++.+-...-.++.++  -+
T Consensus       400 w~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-----~~f~~-~---------~e-~g~Plsvd~~ss~~a~~~~s~~~~  462 (577)
T KOG0642|consen  400 WLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-----CTFGE-P---------KE-HGYPLSVDRTSSRPAHSLASFRFG  462 (577)
T ss_pred             eeeeecccc-cceeeecCCceEEeeccCCcCc-----cccCC-c---------cc-cCCcceEeeccchhHhhhhhcccc
Confidence            999999998 8899999999999999877543     22322 0         01 12233444433221222222  13


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  428 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  428 (457)
                      .-.++++.. ...+..+.......  .   .   ....+..+.++|.+.+.+++.+|+.|+++|..++ ..+....+|..
T Consensus       463 ~~~~~~~ev-~s~~~~~~s~~~~~--~---~---~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s~~a~~~  532 (577)
T KOG0642|consen  463 YTSIDDMEV-VSDLLIFESSASPG--P---R---RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILHSMVAHKD  532 (577)
T ss_pred             cccchhhhh-hhheeeccccCCCc--c---c---ccCccceEEecCCCCeeEecccCCceeccccccc-ccchheeeccc
Confidence            333444433 22222222111110  0   0   0011246889999999999999999999999999 78888999999


Q ss_pred             cceeeeeccCCcceecccccccccc
Q 012721          429 ENRKPILQAAPRARRSSLSNLTRGL  453 (457)
Q Consensus       429 ~v~~~~~~p~~~~~~~~~~~~~~~~  453 (457)
                      .+.++++-|.++-..+  ++.++++
T Consensus       533 svtslai~~ng~~l~s--~s~d~sv  555 (577)
T KOG0642|consen  533 SVTSLAIDPNGPYLMS--GSHDGSV  555 (577)
T ss_pred             eecceeecCCCceEEe--ecCCcee
Confidence            9999999999999998  5555444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.3e-14  Score=136.76  Aligned_cols=213  Identities=16%  Similarity=0.174  Sum_probs=140.5

Q ss_pred             CcEEEEEEEecCCCCEEEEee---CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      ..+...+|  +|||+.|+..+   .+..|.+|++.+++...+..                                    
T Consensus       199 ~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------------------------------  240 (429)
T PRK03629        199 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------------------------------  240 (429)
T ss_pred             CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC------------------------------------
Confidence            56889999  78999888754   34578888888775443211                                    


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                ....+...+|+|||+.|+..  .++  .|++||++ .+...++        ..+
T Consensus       241 --------------------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~~l--------t~~  285 (429)
T PRK03629        241 --------------------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQV--------TDG  285 (429)
T ss_pred             --------------------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEc--------cCC
Confidence                                      11223467899999988864  344  59999998 4444332        233


Q ss_pred             CCceEEEEEecCCccEEEEEcc-CCeEEEE--EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSS-RGFVRLV--DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~-dg~i~lw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      ...+....|+|+| +.|+..+. ++...||  |+.+++..    ++ ..             +........|+|||++|+
T Consensus       286 ~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~----~l-t~-------------~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        286 RSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQ----RI-TW-------------EGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             CCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeE----Ee-ec-------------CCCCccCEEECCCCCEEE
Confidence            4456789999999 77766654 4544555  55554321    11 11             123456788999999998


Q ss_pred             EEe-c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc---EEEEecCCC
Q 012721          344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGVG  416 (457)
Q Consensus       344 s~~-~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~---i~iw~~~~~  416 (457)
                      ... +   ..|.+||+.. +. ...+......                ....|+|||++|+.++.++.   ++++++. |
T Consensus       347 ~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~~~----------------~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G  407 (429)
T PRK03629        347 MVSSNGGQQHIAKQDLAT-GG-VQVLTDTFLD----------------ETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-G  407 (429)
T ss_pred             EEEccCCCceEEEEECCC-CC-eEEeCCCCCC----------------CCceECCCCCEEEEEEcCCCceEEEEEECC-C
Confidence            643 2   4688889864 33 3333321111                36889999999999988765   6777774 4


Q ss_pred             CceeeEEecCCCcceeeeeccC
Q 012721          417 SAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       417 ~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                       .....+.+|.+.+..++|+|-
T Consensus       408 -~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        408 -RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             -CCeEECccCCCCcCCcccCCC
Confidence             345667788899999999984

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=8.8e-15  Score=142.38  Aligned_cols=295  Identities=16%  Similarity=0.216  Sum_probs=183.2

Q ss_pred             ccccchhhHHhhhcCCCCCCccccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhccccccc
Q 012721            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (457)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (457)
                      .+++..|+....+-.    +...|...|..++.++.. .+++||+.||+|++|++......             +     
T Consensus      1028 ~~p~~gW~p~G~lVA----hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------------~----- 1085 (1431)
T KOG1240|consen 1028 GSPPPGWNPRGILVA----HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------------G----- 1085 (1431)
T ss_pred             CCCCCCCCccceEee----hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------------c-----
Confidence            345556877654333    455588999999988765 99999999999999998754421             0     


Q ss_pred             CCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeee
Q 012721           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  166 (457)
Q Consensus        87 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  166 (457)
                        ..++...++..-.            ..+.++..+  ++++.+|.++.||.|++.+++..........           
T Consensus      1086 --~s~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~----------- 1138 (1431)
T KOG1240|consen 1086 --GSARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRVAT----------- 1138 (1431)
T ss_pred             --ceeeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEccccccccceee-----------
Confidence              0112222222222            678888886  6788999999999999999876321111000           


Q ss_pred             ccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCC-EEEEe-CCCeEEE
Q 012721          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCE-TFVSA-DDLRINL  243 (457)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~-~l~~~-~d~~i~i  243 (457)
                                                  .+++-+.             .....-|..-+|.. .+. .++.+ ..+.|..
T Consensus      1139 ----------------------------~~ri~n~-------------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1139 ----------------------------QVRIPNL-------------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred             ----------------------------eeecccc-------------cCCCceEEeecccccccceeEEEEEeccceEE
Confidence                                        0111110             11122233334432 233 56677 8999999


Q ss_pred             EEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccce
Q 012721          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (457)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (457)
                      ||++........      +.....+.|++++.+|.+ +++++|...|.+.+||+|=+...    ..|..           
T Consensus      1178 ~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i----~sw~~----------- 1235 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI----LSWEH----------- 1235 (1431)
T ss_pred             ecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee----ecccC-----------
Confidence            999844333321      133345789999999999 89999999999999999986543    33332           


Q ss_pred             eccccceEEEEEccC---CCeEEEE-e-c-CcEEEEeccCCCCceeEeeeccccccccccccCC-----CCccccceEEE
Q 012721          324 TEIIASISDIKFAND---GQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN-----DSIFDKFECSV  392 (457)
Q Consensus       324 ~~h~~~v~~~~~s~~---g~~l~s~-~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~  392 (457)
                       .+..++..+..+|-   ....+++ . . +.|.+|++.. +.....+....... .+....+.     +.......+.+
T Consensus      1236 -P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~p-~ls~~~Ps~~~~kp~~~~~~~~~~ 1312 (1431)
T KOG1240|consen 1236 -PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGAP-ILSYALPSNDARKPDSLAGISCGV 1312 (1431)
T ss_pred             -cccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCCc-chhhhcccccCCCCCcccceeeec
Confidence             12356777776653   3455544 3 3 8999999986 55444444331111 11111010     11111234455


Q ss_pred             cCCCcEEEEEeCCCcEEEEecCCCC
Q 012721          393 SGDGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       393 s~d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                      ...+.++.+|+.|..|+.||....+
T Consensus      1313 ~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1313 CEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             ccCCceeeecCCccceeeccCCCcc
Confidence            5567789999999999999998763

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.71  E-value=6.3e-16  Score=125.72  Aligned_cols=271  Identities=10%  Similarity=0.072  Sum_probs=161.2

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc--
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT--  191 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  191 (457)
                      +.|+++.|  ..+ .+|.++..-|.|++|.+.+.+....+.......+..                  ...++++...  
T Consensus        15 ~~v~s~~f--qa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~------------------lq~~p~d~l~tq   73 (323)
T KOG0322|consen   15 SSVTSVLF--QAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITN------------------LQSIPNDSLDTQ   73 (323)
T ss_pred             chheehhh--ccc-hhhhcccccceEEEEEeecCccchhhhhhccceeec------------------eeecCCcchhhc
Confidence            88999999  344 479999999999999999887665544322221221                  2222333322  


Q ss_pred             -cccceEEEeccCccccccceeeccCCCCCeeEEEeCC-----CC----CEEEE-e-CCCeEEEEEcCCCcceeeeeecC
Q 012721          192 -ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-----DC----ETFVS-A-DDLRINLWNLEISDQCFNIVDMK  259 (457)
Q Consensus       192 -~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~----~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~  259 (457)
                       .+..+.+|++....-       ...|.-.++++.|++     ++    +.++. + ..-.+.+-|.. ....+++.   
T Consensus        74 gRd~~L~lw~ia~s~~-------i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g-~~tqv~i~---  142 (323)
T KOG0322|consen   74 GRDPLLILWTIAYSAF-------ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG-DTTQVQIA---  142 (323)
T ss_pred             CCCceEEEEEccCcce-------EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC-ccceeEcc---
Confidence             233677787754211       123444455555543     11    11222 1 11112222222 11111111   


Q ss_pred             CCcccCCCCceEEEEEecC-Cc-cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721          260 PSNMDDLTEVITSAEFHPI-YC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~-~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  337 (457)
                      +..-.+..+.++|..+.-+ +. -+++.|.++|.+.+||+.++........       ..........|..+|.++.|.+
T Consensus       143 dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~-------~~kv~~~~ash~qpvlsldyas  215 (323)
T KOG0322|consen  143 DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ-------SSKVESPNASHKQPVLSLDYAS  215 (323)
T ss_pred             CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-------ccccccchhhccCcceeeeech
Confidence            1112334466777775332 21 2667778999999999998743322111       2222334567889999999986


Q ss_pred             CCCeEEEEe-cCcEEEEeccCC-CCc-eeE-eee-ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          338 DGQHLLSRD-YMNLKLWDIRMD-STP-VAT-FKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       338 ~g~~l~s~~-~~~i~~wd~~~~-~~~-~~~-~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      .-..=++|+ +..+..|++.-. +.+ +.. ... +.+                |..+.+-||++.+||++.|++|+||.
T Consensus       216 ~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpG----------------v~gvrIRpD~KIlATAGWD~RiRVys  279 (323)
T KOG0322|consen  216 SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG----------------VSGVRIRPDGKILATAGWDHRIRVYS  279 (323)
T ss_pred             hhcCCcCCCccccceeeeeccccCcccccceEEecCCC----------------ccceEEccCCcEEeecccCCcEEEEE
Confidence            433334443 367888888632 111 111 111 222                14788999999999999999999999


Q ss_pred             cCCCCceeeEEecCCCcceeeeeccCCc
Q 012721          413 HGVGSAGGITVEAGKNENRKPILQAAPR  440 (457)
Q Consensus       413 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~  440 (457)
                      .++. ..+.++..|.+.|++++|+|+.+
T Consensus       280 wrtl-~pLAVLkyHsagvn~vAfspd~~  306 (323)
T KOG0322|consen  280 WRTL-NPLAVLKYHSAGVNAVAFSPDCE  306 (323)
T ss_pred             eccC-CchhhhhhhhcceeEEEeCCCCc
Confidence            9999 88999999999999999999943

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=8.5e-14  Score=118.82  Aligned_cols=157  Identities=18%  Similarity=0.230  Sum_probs=120.6

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      .+|.+|.+    +-+.|+++-.+. |.|||+.+.+....+...                                     
T Consensus        88 t~IL~Vrm----Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~-------------------------------------  125 (391)
T KOG2110|consen   88 TSILAVRM----NRKRLVVCLEES-IYIYDIKDMKLLHTIETT-------------------------------------  125 (391)
T ss_pred             CceEEEEE----ccceEEEEEccc-EEEEecccceeehhhhcc-------------------------------------
Confidence            56899988    344677776655 999999998876554311                                     


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE--e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                           ..+...+.++++++.+.+++.  + ..|.|.+||.. .-+....       +..|.+.+
T Consensus       126 ---------------------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-nl~~v~~-------I~aH~~~l  176 (391)
T KOG2110|consen  126 ---------------------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-NLQPVNT-------INAHKGPL  176 (391)
T ss_pred             ---------------------CCCccceEeeccCCCCceEEecCCCCCceEEEEEcc-cceeeeE-------EEecCCce
Confidence                                 235556777888888888887  3 78999999998 4555544       57899999


Q ss_pred             EEEEEecCCccEEEEEccCCe-EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721          271 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~  348 (457)
                      .+++|+++| .+||++|+.|+ |||+.+.+++.....-+-..               ...|.+++|+|++++|++.++ +
T Consensus       177 Aalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---------------~~~IySL~Fs~ds~~L~~sS~Te  240 (391)
T KOG2110|consen  177 AALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---------------PVSIYSLSFSPDSQFLAASSNTE  240 (391)
T ss_pred             eEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCce---------------eeEEEEEEECCCCCeEEEecCCC
Confidence            999999999 99999999987 79999998865421111111               257999999999999998887 9


Q ss_pred             cEEEEeccC
Q 012721          349 NLKLWDIRM  357 (457)
Q Consensus       349 ~i~~wd~~~  357 (457)
                      +|.+|.++.
T Consensus       241 TVHiFKL~~  249 (391)
T KOG2110|consen  241 TVHIFKLEK  249 (391)
T ss_pred             eEEEEEecc
Confidence            999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.5e-15  Score=143.55  Aligned_cols=217  Identities=11%  Similarity=0.074  Sum_probs=144.2

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ..|...+.+.+|||||+.||.++.+   ..|++||+.+++..                         .+..+.+|.    
T Consensus       200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------------------------~l~~~~g~~----  250 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------------------------VVASFRGHN----  250 (429)
T ss_pred             ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-------------------------EEecCCCcc----
Confidence            4467789999999999999887643   36999999876531                         233344443    


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEE--ecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWK--VRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                                 ..++|  +|||+.|+.++ .+|.+.||.  +.++....+                              
T Consensus       251 -----------~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------  287 (429)
T PRK01742        251 -----------GAPAF--SPDGSRLAFASSKDGVLNIYVMGANGGTPSQL------------------------------  287 (429)
T ss_pred             -----------CceeE--CCCCCEEEEEEecCCcEEEEEEECCCCCeEee------------------------------
Confidence                       35789  78999888764 678766664  444433221                              


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                                                      ..+...+....|+|||+.|+.+  .++...||+++..+.....     
T Consensus       288 --------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~-----  330 (429)
T PRK01742        288 --------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL-----  330 (429)
T ss_pred             --------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-----
Confidence                                            2344467789999999987754  6788888887643333322     


Q ss_pred             CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                        + .+..  ..+.|+|+| +.|++.+.++ +.+||+.+++..    .....               .....+.|+|+|+
T Consensus       331 --l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~----~lt~~---------------~~~~~~~~sPdG~  384 (429)
T PRK01742        331 --V-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTE----VLSST---------------FLDESPSISPNGI  384 (429)
T ss_pred             --e-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeE----EecCC---------------CCCCCceECCCCC
Confidence              1 2222  457899999 8888877765 556999886532    11111               1124578999999


Q ss_pred             eEEEEec-CcEEEEecc-CCCCceeEeeeccccccccccccCCCCccccceEEEcCC
Q 012721          341 HLLSRDY-MNLKLWDIR-MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  395 (457)
Q Consensus       341 ~l~s~~~-~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d  395 (457)
                      +|+.++. +.+.+|++. ..++....+..|.+.+               ...+|+|-
T Consensus       385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~---------------~~p~wsp~  426 (429)
T PRK01742        385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV---------------KFPAWSPY  426 (429)
T ss_pred             EEEEEEcCCCceEEEEEECCCCceEEccCCCCCC---------------CCcccCCC
Confidence            9998764 767766652 2367777887776543               46888874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.70  E-value=1e-14  Score=137.13  Aligned_cols=256  Identities=12%  Similarity=0.100  Sum_probs=173.5

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|.++.|+| .+..+++.|+.+|.|.+||+..+.......                                       
T Consensus       243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~---------------------------------------  282 (555)
T KOG1587|consen  243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSG---------------------------------------  282 (555)
T ss_pred             CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcc---------------------------------------
Confidence            6799999986 556788999999999999998875421100                                       


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCc----ccCC
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDDL  266 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~  266 (457)
                                      +......|..+++.+.|..+.  .-|+++ .||.|..|+++.-.............    -...
T Consensus       283 ----------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~  346 (555)
T KOG1587|consen  283 ----------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSK  346 (555)
T ss_pred             ----------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccc
Confidence                            000115789999999996533  447777 99999999987433322222111100    0122


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE-EEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSR  345 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~  345 (457)
                      ...+++++|.+..+..++.|+++|.|.-=+........  ...++.       ...+..|.++|+++.++|=+..+ +++
T Consensus       347 ~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~-------~~~~~~h~g~v~~v~~nPF~~k~fls~  417 (555)
T KOG1587|consen  347 AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--EVSYKG-------HSTFITHIGPVYAVSRNPFYPKNFLSV  417 (555)
T ss_pred             ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc--cccccc-------cccccccCcceEeeecCCCccceeeee
Confidence            35689999999888899999999988763333221110  011121       23356778999999999976544 456


Q ss_pred             ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCC-CceeeEE
Q 012721          346 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG-SAGGITV  423 (457)
Q Consensus       346 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~-~~~~~~~  423 (457)
                      +|-+++||.......++..+..+...+               ++++|||.. ..++++..||.|.+||+... ..+....
T Consensus       418 gDW~vriWs~~~~~~Pl~~~~~~~~~v---------------~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~  482 (555)
T KOG1587|consen  418 GDWTVRIWSEDVIASPLLSLDSSPDYV---------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ  482 (555)
T ss_pred             ccceeEeccccCCCCcchhhhhcccee---------------eeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc
Confidence            689999999874466776666555533               799999985 56778888999999998754 2344455


Q ss_pred             ecCCCcceeeeeccCCcceecccccc
Q 012721          424 EAGKNENRKPILQAAPRARRSSLSNL  449 (457)
Q Consensus       424 ~~~~~~v~~~~~~p~~~~~~~~~~~~  449 (457)
                      ..+....+.+.|++.++...-|-.++
T Consensus       483 ~~~~~~l~~~~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  483 KVCSPALTRVRWSPNGKLLAVGDANG  508 (555)
T ss_pred             cccccccceeecCCCCcEEEEecCCC
Confidence            55567778888888887777655443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=5.8e-14  Score=117.50  Aligned_cols=239  Identities=13%  Similarity=0.155  Sum_probs=146.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (457)
                      ...+++|+.|..-+++|..+| .+||+++--++.                           ...+-+...          
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~---------------------------~~r~~~~~G----------   48 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES---------------------------ASRQFIDGG----------   48 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhh---------------------------hhhccccCc----------
Confidence            455699999999999999888 999998754321                           011111100          


Q ss_pred             CcEEEEEEEecCCCCEEE-EeeC------CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          114 EKINRVRWCAAPNGSMFI-LSTN------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~-s~s~------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                      -.+..+-|   ..+ +++ .|+.      -+.+.|||=..++  .+.++....+|.+|.+....-.++            
T Consensus        49 ~~~veMLf---R~N-~laLVGGg~~pky~pNkviIWDD~k~~--~i~el~f~~~I~~V~l~r~riVvv------------  110 (346)
T KOG2111|consen   49 FKIVEMLF---RSN-YLALVGGGSRPKYPPNKVIIWDDLKER--CIIELSFNSEIKAVKLRRDRIVVV------------  110 (346)
T ss_pred             hhhhhHhh---hhc-eEEEecCCCCCCCCCceEEEEecccCc--EEEEEEeccceeeEEEcCCeEEEE------------
Confidence            11222223   222 333 3332      2568999943333  344444445555555442211111            


Q ss_pred             CCccccccceEEEeccCccccc-cceeeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          187 HLEWTENMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                           ..+.|.+|......... ++.+  ......+.+++-..+..+||. | .-|.|.|-|+.......      +..+
T Consensus       111 -----l~~~I~VytF~~n~k~l~~~et--~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~------p~~I  177 (346)
T KOG2111|consen  111 -----LENKIYVYTFPDNPKLLHVIET--RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA------PSII  177 (346)
T ss_pred             -----ecCeEEEEEcCCChhheeeeec--ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC------ceEE
Confidence                 12356677665322211 1111  122233444444445555555 5 78999999998433311      1126


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCe-EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l  342 (457)
                      .+|...|.|++.+-+| .++|++|..|+ |||||..++......-+-.+               ...|.+++|||++.+|
T Consensus       178 ~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---------------~A~iy~iaFSp~~s~L  241 (346)
T KOG2111|consen  178 NAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRGVD---------------RADIYCIAFSPNSSWL  241 (346)
T ss_pred             EcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---------------hheEEEEEeCCCccEE
Confidence            7899999999999999 99999999997 89999999876522111111               2579999999999999


Q ss_pred             EEEec-CcEEEEeccC
Q 012721          343 LSRDY-MNLKLWDIRM  357 (457)
Q Consensus       343 ~s~~~-~~i~~wd~~~  357 (457)
                      |+++| |++.++.++.
T Consensus       242 avsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  242 AVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEcCCCeEEEEEeec
Confidence            99999 9999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.68  E-value=9.1e-15  Score=133.63  Aligned_cols=232  Identities=15%  Similarity=0.220  Sum_probs=154.4

Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      .|+.++|  .|||..|+.+..++ +.+||.++|......                                         
T Consensus        14 ci~d~af--kPDGsqL~lAAg~r-lliyD~ndG~llqtL-----------------------------------------   49 (1081)
T KOG1538|consen   14 CINDIAF--KPDGTQLILAAGSR-LLVYDTSDGTLLQPL-----------------------------------------   49 (1081)
T ss_pred             chheeEE--CCCCceEEEecCCE-EEEEeCCCccccccc-----------------------------------------
Confidence            4899999  78998888877655 789999988765543                                         


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce-------eeeeecCC------
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC-------FNIVDMKP------  260 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-------~~~~~~~~------  260 (457)
                                          ++|.+.|+|++|+.||+.+++| .|+.|.+|.....+..       ++-....|      
T Consensus        50 --------------------KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~La  109 (1081)
T KOG1538|consen   50 --------------------KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLA  109 (1081)
T ss_pred             --------------------ccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhh
Confidence                                4666666666666666666666 6666666655422211       11100000      


Q ss_pred             --------------Ccc--cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721          261 --------------SNM--DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (457)
Q Consensus       261 --------------~~~--~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (457)
                                    ...  ......+.+.+|..|| .+++.|-.+|+|.+-+-......    ++-.           ..
T Consensus       110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~----~I~R-----------pg  173 (1081)
T KOG1538|consen  110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKV----KIER-----------PG  173 (1081)
T ss_pred             hcchhhccccChhhhhHHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcce----EEeC-----------CC
Confidence                          001  1223567788899999 99999999999998754332111    1111           12


Q ss_pred             ccccceEEEEEccCC-----CeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcE
Q 012721          325 EIIASISDIKFANDG-----QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  398 (457)
Q Consensus       325 ~h~~~v~~~~~s~~g-----~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~  398 (457)
                      +.+++|++++|+|..     ..++..+. .++.+|.+.  ++.+..-+.-.               |+-.++.+-++|.|
T Consensus       174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~---------------FdP~CisYf~NGEy  236 (1081)
T KOG1538|consen  174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIGKDRALN---------------FDPCCISYFTNGEY  236 (1081)
T ss_pred             CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeecccccCC---------------CCchhheeccCCcE
Confidence            346899999999963     35555554 677777774  44443221111               11147899999999


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          399 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       399 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      ++.|+.|+.+++|--+ | ..+-++......++.|..+|++...+.|
T Consensus       237 ~LiGGsdk~L~~fTR~-G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~G  281 (1081)
T KOG1538|consen  237 ILLGGSDKQLSLFTRD-G-VRLGTVGEQDSWIWTVQAKPNSQYVVVG  281 (1081)
T ss_pred             EEEccCCCceEEEeec-C-eEEeeccccceeEEEEEEccCCceEEEE
Confidence            9999999999999854 4 5667777788999999999999887764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.4e-15  Score=131.79  Aligned_cols=200  Identities=16%  Similarity=0.225  Sum_probs=140.8

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (457)
Q Consensus        36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (457)
                      .+++|+.+|..|++|+.||++|||+......                           +..+..|.            +.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---------------------------~l~e~~~~------------~e  188 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---------------------------ILEEIAHH------------AE  188 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh---------------------------hhhhHhhc------------Cc
Confidence            8899999999999999999999999776543                           23455566            78


Q ss_pred             EEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (457)
Q Consensus       116 V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (457)
                      |.++.|  ++||+.|++.+.| ..+||+.+++.......-                                        
T Consensus       189 V~DL~F--S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~----------------------------------------  225 (398)
T KOG0771|consen  189 VKDLDF--SPDGKFLASIGAD-SARVWSVNTGAALARKTP----------------------------------------  225 (398)
T ss_pred             ccccee--CCCCcEEEEecCC-ceEEEEeccCchhhhcCC----------------------------------------
Confidence            999999  8999999999999 899999999844322110                                        


Q ss_pred             eEEEeccCccccccceeeccCCCCCeeEEEeCCCC---C-EEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC---E-TFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~-~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                         .+.......+.|+.++   . ++++.  .-+.|..||+...... ..+..  .+.......
T Consensus       226 -------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~--~~~~~~~~s  283 (398)
T KOG0771|consen  226 -------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRL--RKKIKRFKS  283 (398)
T ss_pred             -------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccch--hhhhhccCc
Confidence                               1112234455665544   2 23332  4566666665422221 11110  112223357


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~  348 (457)
                      |.+++.+++| ++++.|+.||.|.+++..+.+..    ...+            ..|...|+.+.|+|+.+++++-+ +.
T Consensus       284 iSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~----~~vk------------~aH~~~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  284 ISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRL----QYVK------------EAHLGFVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             ceeEEEcCCC-cEEEEeccCCcEEEEEeceeeee----Eeeh------------hhheeeeeeEEEcCCcCcccccccCC
Confidence            9999999999 99999999999999999886543    2222            35778999999999999999754 47


Q ss_pred             cEEEEecc
Q 012721          349 NLKLWDIR  356 (457)
Q Consensus       349 ~i~~wd~~  356 (457)
                      .+.+..+.
T Consensus       347 ~~~v~~l~  354 (398)
T KOG0771|consen  347 EAAVTKLA  354 (398)
T ss_pred             ceeEEEEe
Confidence            77777664

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.68  E-value=2.8e-13  Score=129.00  Aligned_cols=273  Identities=24%  Similarity=0.385  Sum_probs=190.8

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeC-CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ...|...|.+++|+|++.++++++. ++.+++|+.....                           .+..+.+|.     
T Consensus       151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~-----  198 (466)
T COG2319         151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------------------------PLSTLAGHT-----  198 (466)
T ss_pred             EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc---------------------------eEEeeccCC-----
Confidence            3458999999999999999999885 9999999988643                           345666677     


Q ss_pred             cccccccCcEEEEEEEecCCCC-EEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          107 LKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                             ..|.+++|  ++++. .+++++.|+.|++||...+.....                                 
T Consensus       199 -------~~v~~~~~--~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~---------------------------------  236 (466)
T COG2319         199 -------DPVSSLAF--SPDGGLLIASGSSDGTIRLWDLSTGKLLRS---------------------------------  236 (466)
T ss_pred             -------CceEEEEE--cCCcceEEEEecCCCcEEEEECCCCcEEee---------------------------------
Confidence                   78999999  57776 555559999999997764443321                                 


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                                 .+.+|.... ...|+|++..++++ .|+.+++|+..........       +.
T Consensus       237 ---------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------~~  281 (466)
T COG2319         237 ---------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT-------LS  281 (466)
T ss_pred             ---------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE-------Ee
Confidence                                       014555554 33899999888888 9999999999844432322       24


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      +|...+.++.|.|++ ..+++++.|+.+.+||..+.....    ...           ...|...+..+.|.+++..++.
T Consensus       282 ~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~~~~~  345 (466)
T COG2319         282 GHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLS----SLT-----------LKGHEGPVSSLSFSPDGSLLVS  345 (466)
T ss_pred             cCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEE----Eee-----------ecccCCceEEEEECCCCCEEEE
Confidence            678999999999987 777778888999999888764331    111           1234557889988433245555


Q ss_pred             E--ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE-EeCCCcEEEEecCCCCceee
Q 012721          345 R--DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGSAGGI  421 (457)
Q Consensus       345 ~--~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~~~dg~i~iw~~~~~~~~~~  421 (457)
                      +  .++.+.+|+... ............ .               ..+.+++ ...++. +..++.+.+|+.... ....
T Consensus       346 ~~~~d~~~~~~~~~~-~~~~~~~~~~~~-~---------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~  406 (466)
T COG2319         346 GGSDDGTIRLWDLRT-GKPLKTLEGHSN-V---------------LSVSFSP-DGRVVSSGSTDGTVRLWDLSTG-SLLR  406 (466)
T ss_pred             eecCCCcEEeeecCC-CceeEEecCCce-E---------------EEEEECC-CCCEEEEecCCCceEEEecccC-eeee
Confidence            4  348899999975 332222222221 1               4788888 444444 688999999999988 3333


Q ss_pred             EEecCCCcceeeeeccCCcceec
Q 012721          422 TVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       422 ~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ....+...+....+.+++.....
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~  429 (466)
T COG2319         407 NLDGHTSRVTSLDFSPDGKSLAS  429 (466)
T ss_pred             eccCCCCcEEEEEECCCCcEEEE
Confidence            33333377888888888776654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.67  E-value=3.2e-15  Score=133.23  Aligned_cols=176  Identities=15%  Similarity=0.179  Sum_probs=129.6

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEE
Q 012721          215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (457)
Q Consensus       215 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~  293 (457)
                      ..|.+.+.+-.|+|||.-|+++ .||.|++|...  +....+       +.....+|.|++|.|+..+.+.+.  .+.+.
T Consensus       101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRSt-------l~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~  169 (737)
T KOG1524|consen  101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRST-------VVQNEESIRCARWAPNSNSIVFCQ--GGHIS  169 (737)
T ss_pred             hhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHH-------HhhcCceeEEEEECCCCCceEEec--CCeEE
Confidence            6899999999999999999998 99999999865  333222       334557899999999984444443  33444


Q ss_pred             EEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccc
Q 012721          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  372 (457)
Q Consensus       294 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~  372 (457)
                      +=.+....      +++           ....|.+-|.++.|++...++++|++ -..++||..  +..+..-..|+.++
T Consensus       170 IKpL~~n~------k~i-----------~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~I  230 (737)
T KOG1524|consen  170 IKPLAANS------KII-----------RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAI  230 (737)
T ss_pred             Eeeccccc------cee-----------EEeccCcEEEEeecCccccceeecCCceeEEeeccc--CcccccCChhccce
Confidence            44333321      222           23668899999999999999999875 999999984  78888888888765


Q ss_pred             cccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecccccc
Q 012721          373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL  449 (457)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~  449 (457)
                                     ++++|.|| ..++.++. +++++            .....+.+..++|+|||...+.|-++.
T Consensus       231 ---------------TSva~npd-~~~~v~S~-nt~R~------------~~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  231 ---------------TSVAFNPE-KDYLLWSY-NTARF------------SSPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             ---------------eeeeeccc-cceeeeee-eeeee------------cCCCccceEEEEEcCCCceeeccccCc
Confidence                           89999999 55555554 34442            233456677889999999888876654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=3e-15  Score=133.77  Aligned_cols=249  Identities=13%  Similarity=0.124  Sum_probs=160.0

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (457)
                      ...+|.||+            +-|+++.|  +.+|.+|++||.|-.+.|||.-..+....+.                  
T Consensus        42 lE~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~------------------   89 (758)
T KOG1310|consen   42 LEAELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLLHSIS------------------   89 (758)
T ss_pred             hhhhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhcceeeeee------------------
Confidence            345688998            78999999  7999999999999999999988666555443                  


Q ss_pred             ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCC
Q 012721          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEIS  249 (457)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~  249 (457)
                                                                .+|...|.++.|-|  +.+++++| .|..|++||+...
T Consensus        90 ------------------------------------------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~  127 (758)
T KOG1310|consen   90 ------------------------------------------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS  127 (758)
T ss_pred             ------------------------------------------cccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence                                                      78999999999988  56788888 9999999999842


Q ss_pred             cceeee--eecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721          250 DQCFNI--VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (457)
Q Consensus       250 ~~~~~~--~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  327 (457)
                      ..--.-  ......-+.-|...|..++..|++++.+.++++||+|+-||++....+.......       ..-..+...-
T Consensus       128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~-------~~l~ny~~~l  200 (758)
T KOG1310|consen  128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP-------SILVNYNPQL  200 (758)
T ss_pred             cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc-------HHHHHhchhh
Confidence            111000  0000022567888899999999999999999999999999999854332111000       0000001111


Q ss_pred             cceEEEEEccCC-CeEEEEe-cCcEEEEeccCCCCceeEeeeccc-------cccccccccC-------CCCccccceEE
Q 012721          328 ASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH-------LRPKLCDLYN-------NDSIFDKFECS  391 (457)
Q Consensus       328 ~~v~~~~~s~~g-~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~-------~~~~~~v~~~~  391 (457)
                      -...++..+|.. .+|+.|+ +--.++||.+...+....-..+..       .+...++..-       ..-+.-.+-+.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            346789999965 5666664 588999996431211111000000       0100000000       00111125688


Q ss_pred             EcCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721          392 VSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  422 (457)
Q Consensus       392 ~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~  422 (457)
                      |+|+|.-|+..-..-.|+++|+..++.....
T Consensus       281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             ECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            9999876665444457999999988544333

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=7.9e-14  Score=118.64  Aligned_cols=268  Identities=14%  Similarity=0.120  Sum_probs=168.3

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      .-.+.-++|++.-..+|++..|-.|+||+-.....                            ..++...+         
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p----------------------------t~Lks~sQ---------  140 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP----------------------------TKLKSVSQ---------  140 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC----------------------------ceecchhh---------
Confidence            34678899998777788999999999999765322                            23333221         


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccce-eEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                        ..|++++|-| ..++.|+.|+..| |.+|....-.. ...+...                                  
T Consensus       141 --rnvtclawRP-lsaselavgCr~g-IciW~~s~tln~~r~~~~~----------------------------------  182 (445)
T KOG2139|consen  141 --RNVTCLAWRP-LSASELAVGCRAG-ICIWSDSRTLNANRNIRMM----------------------------------  182 (445)
T ss_pred             --cceeEEEecc-CCcceeeeeecce-eEEEEcCcccccccccccc----------------------------------
Confidence              5699999965 3345777777766 88998653211 1100000                                  


Q ss_pred             ccccceEEEeccCccccccceeec-cCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                     ..-+.+++. .+| .+|+++.|++||..++++  .|..|.|||+. .+..+.+.       ....
T Consensus       183 ---------------s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL~-------~~gl  238 (445)
T KOG2139|consen  183 ---------------STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPLI-------PKGL  238 (445)
T ss_pred             ---------------cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCccccc-------ccCC
Confidence                           000111110 355 689999999999999997  89999999999 56655442       1234


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      +.+.-+.|+||+ .+|..+.-|+..++|+........   +-.-              ..+.|...+|+|+|++|+-...
T Consensus       239 gg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~e---rw~l--------------gsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  239 GGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKE---RWIL--------------GSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             CceeeEEEcCCC-CEEEEecccceeeeehhcccceec---ceec--------------cCCceeeeeecCCCCEEEEEEc
Confidence            668899999999 999999999999999655432110   1111              1358999999999999987766


Q ss_pred             CcEEEEeccCCCCceeEeee-cccccccccccc-------CCCCccccceEEEcCCCcEEEEEeCC--------CcEEEE
Q 012721          348 MNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLY-------NNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIF  411 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~v~~~~~s~d~~~l~s~~~d--------g~i~iw  411 (457)
                      +.-++|.+...++...-... ....+-...++.       +.-+..+..+++|.|.|.+||+.-..        ..|.+|
T Consensus       301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~f  380 (445)
T KOG2139|consen  301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRF  380 (445)
T ss_pred             CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhh
Confidence            77777776543332111100 000000000000       01112233689999999999975443        346777


Q ss_pred             ecCCC
Q 012721          412 SHGVG  416 (457)
Q Consensus       412 ~~~~~  416 (457)
                      |.+..
T Consensus       381 dtr~s  385 (445)
T KOG2139|consen  381 DTRKS  385 (445)
T ss_pred             ccccc
Confidence            77654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.66  E-value=1.9e-13  Score=125.39  Aligned_cols=272  Identities=12%  Similarity=0.103  Sum_probs=154.3

Q ss_pred             EEEeeCCCeEEEEEecc-cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccc
Q 012721          130 FILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR  208 (457)
Q Consensus       130 l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  208 (457)
                      +++...++.|.+|++.+ ++...............+++++ ++..+....           . ..+.+..|+++......
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~-----------~-~~~~i~~~~~~~~g~l~   71 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP-DKRHLYVGV-----------R-PEFRVLSYRIADDGALT   71 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECC-CCCEEEEEE-----------C-CCCcEEEEEECCCCceE
Confidence            34457789999999964 4433333322222233333332 222211110           0 23467778776322212


Q ss_pred             cceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEE-EE
Q 012721          209 CQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AY  285 (457)
Q Consensus       209 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~  285 (457)
                      .....  ........++++|++++++++  .++.|.+|+++..+.......    .+. +.....+++++|++ +++ ++
T Consensus        72 ~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~----~~~-~~~~~~~~~~~p~g-~~l~v~  143 (330)
T PRK11028         72 FAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ----IIE-GLEGCHSANIDPDN-RTLWVP  143 (330)
T ss_pred             Eeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee----ecc-CCCcccEeEeCCCC-CEEEEe
Confidence            22211  122346689999999988887  689999999974332221110    011 22346778899999 666 55


Q ss_pred             EccCCeEEEEEccCCeeeccc-cccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cCcEEEEeccCC-CC-
Q 012721          286 SSSRGFVRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD-ST-  360 (457)
Q Consensus       286 ~~~dg~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~-~~-  360 (457)
                      ...++.|.+||+.+....... ......           . .......+.|+|+|+++++++  ++.|.+|+++.. ++ 
T Consensus       144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~-----------~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~  211 (330)
T PRK11028        144 CLKEDRIRLFTLSDDGHLVAQEPAEVTT-----------V-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI  211 (330)
T ss_pred             eCCCCEEEEEEECCCCcccccCCCceec-----------C-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence            557799999999763322100 000000           0 013456789999999998775  399999999732 22 


Q ss_pred             -ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCCceeeEEecCC---Ccceeeee
Q 012721          361 -PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGK---NENRKPIL  435 (457)
Q Consensus       361 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~---~~v~~~~~  435 (457)
                       .+..+........       ...  ....+.++||+++|+++.. ++.|.+|++...... .++.++.   .....+.+
T Consensus       212 ~~~~~~~~~p~~~~-------~~~--~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~  281 (330)
T PRK11028        212 ECVQTLDMMPADFS-------DTR--WAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNI  281 (330)
T ss_pred             EEEEEEecCCCcCC-------CCc--cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEE
Confidence             2222221111000       000  0025889999999998865 789999999754222 2222221   24568899


Q ss_pred             ccCCcceec
Q 012721          436 QAAPRARRS  444 (457)
Q Consensus       436 ~p~~~~~~~  444 (457)
                      +|++.....
T Consensus       282 ~~dg~~l~v  290 (330)
T PRK11028        282 DHSGKYLIA  290 (330)
T ss_pred             CCCCCEEEE
Confidence            999977765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.7e-13  Score=130.01  Aligned_cols=212  Identities=12%  Similarity=0.038  Sum_probs=137.7

Q ss_pred             CcEEEEEEEecCCCCEEEEeeC---CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      ..+.+.+|  +|||+.|+..+.   +..|.+||+.+++...+                                      
T Consensus       202 ~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l--------------------------------------  241 (435)
T PRK05137        202 SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELV--------------------------------------  241 (435)
T ss_pred             CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------------------------
Confidence            67999999  789998888753   46899999988765432                                      


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                              ..+.+.+...+|+|||+.|+..  .++  .|++||+. .+...+        +..+
T Consensus       242 ------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------Lt~~  288 (435)
T PRK05137        242 ------------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTR--------LTDS  288 (435)
T ss_pred             ------------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEE--------ccCC
Confidence                                    2233456678999999987643  444  47778887 444333        3345


Q ss_pred             CCceEEEEEecCCccEEEEEc-cCC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~-~dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      ........|+|+| +.|+..+ .+|  .|.+||+..++..    ++..              +...+....|+|+|++|+
T Consensus       289 ~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~--------------~~~~~~~~~~SpdG~~ia  349 (435)
T PRK05137        289 PAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPR----RISF--------------GGGRYSTPVWSPRGDLIA  349 (435)
T ss_pred             CCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeE----Eeec--------------CCCcccCeEECCCCCEEE
Confidence            5556778999999 7777665 333  5777887665321    1111              123466788999999998


Q ss_pred             EEe-c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC------CcEEEEec
Q 012721          344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSH  413 (457)
Q Consensus       344 s~~-~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d------g~i~iw~~  413 (457)
                      ... +   ..|.+||+..  .....+.. ....               ....|+|||++|+..+.+      ..++++++
T Consensus       350 ~~~~~~~~~~i~~~d~~~--~~~~~lt~-~~~~---------------~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        350 FTKQGGGQFSIGVMKPDG--SGERILTS-GFLV---------------EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             EEEcCCCceEEEEEECCC--CceEeccC-CCCC---------------CCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            653 2   3677888753  33333321 1111               368999999998875543      25788888


Q ss_pred             CCCCceeeEEecCCCcceeeeeccC
Q 012721          414 GVGSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       414 ~~~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                      ..+..  ..+. ..+.+...+|+|-
T Consensus       412 ~g~~~--~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        412 TGRNE--REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             CCCce--EEcc-CCCCccCcccCCC
Confidence            76522  3333 3445777888874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=6.7e-14  Score=132.63  Aligned_cols=212  Identities=15%  Similarity=0.127  Sum_probs=137.6

Q ss_pred             CcEEEEEEEecCCCCEEEEeeC---CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      ..+.+.+|  +|+|+.|+..+.   +..|.+|++.+++...+.                                     
T Consensus       204 ~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-------------------------------------  244 (433)
T PRK04922        204 EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-------------------------------------  244 (433)
T ss_pred             CccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-------------------------------------
Confidence            56888999  789999888763   346899998877543321                                     


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                               .......+.+|+|||+.|+..  .++  .|++||+. .+...+        +..+
T Consensus       245 -------------------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~~~--------lt~~  290 (433)
T PRK04922        245 -------------------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQLTR--------LTNH  290 (433)
T ss_pred             -------------------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC-CCCeEE--------CccC
Confidence                                     122234478999999987643  444  69999998 444433        2334


Q ss_pred             CCceEEEEEecCCccEEEEEc-cCCe--EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSS-SRGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~-~dg~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      ......++|+|+| +.|+..+ .+|.  |.++|+.+++..    ++...              ......++|+|+|++|+
T Consensus       291 ~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~----~lt~~--------------g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        291 FGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAE----RLTFQ--------------GNYNARASVSPDGKKIA  351 (433)
T ss_pred             CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeE----EeecC--------------CCCccCEEECCCCCEEE
Confidence            4455678999999 7776665 4555  555666554321    11111              12344689999999998


Q ss_pred             EEe-c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC---CcEEEEecCCC
Q 012721          344 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG  416 (457)
Q Consensus       344 s~~-~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~iw~~~~~  416 (457)
                      ..+ +   ..|.+||+.. ++.. .+. +....               ....|+|||++|+..+.+   +.|+++++..+
T Consensus       352 ~~~~~~~~~~I~v~d~~~-g~~~-~Lt-~~~~~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        352 MVHGSGGQYRIAVMDLST-GSVR-TLT-PGSLD---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEECCCCceeEEEEECCC-CCeE-ECC-CCCCC---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            653 2   3689999864 4433 333 21111               367999999988877653   35778887543


Q ss_pred             CceeeEEecCCCcceeeeecc
Q 012721          417 SAGGITVEAGKNENRKPILQA  437 (457)
Q Consensus       417 ~~~~~~~~~~~~~v~~~~~~p  437 (457)
                        ....+..+.+.+..++|+|
T Consensus       414 --~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        414 --VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             --ceEEcccCCCCCCCCccCC
Confidence              4455556677788888887

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.1e-13  Score=124.56  Aligned_cols=291  Identities=15%  Similarity=0.199  Sum_probs=190.3

Q ss_pred             CccccCCceEEEEECCCCCEE-EEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           27 EELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        27 ~~~~h~~~V~~~~~s~~~~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ..+.+...-+.|..+|||+|+ |||..--.|++||+.....                             .|.-|..   
T Consensus        46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhlD---   93 (703)
T KOG2321|consen   46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHLD---   93 (703)
T ss_pred             HhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-----------------------------eeeeccc---
Confidence            345688899999999999986 6777888999999886553                             3555542   


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                              +.+..+..+ +.|-..++.-..|.+|.+.... |....+..   +..-.++.++.++-.++..+.       
T Consensus        94 --------ae~V~feiL-sDD~SK~v~L~~DR~IefHak~-G~hy~~RI---P~~GRDm~y~~~scDly~~gs-------  153 (703)
T KOG2321|consen   94 --------AEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY-GRHYRTRI---PKFGRDMKYHKPSCDLYLVGS-------  153 (703)
T ss_pred             --------ccceeEEEe-ccchhhheEeecCceeeehhhc-Ceeeeeec---CcCCccccccCCCccEEEeec-------
Confidence                    334444333 4554455556677877664432 22111110   011112222222222221111       


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                             +..+.-.+++.   ++-+.-+ ....+.++++..++...+|++| .+|.|-.||.+ .......++... ...
T Consensus       154 -------g~evYRlNLEq---GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR-~ksrv~~l~~~~-~v~  220 (703)
T KOG2321|consen  154 -------GSEVYRLNLEQ---GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR-DKSRVGTLDAAS-SVN  220 (703)
T ss_pred             -------CcceEEEEccc---ccccccc-ccccccceeeeecCccceEEecccCceEEEecch-hhhhheeeeccc-ccC
Confidence                   22444445442   2222222 3445789999999999999999 89999999999 455554544332 233


Q ss_pred             CCCC-----ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-
Q 012721          265 DLTE-----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-  338 (457)
Q Consensus       265 ~~~~-----~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-  338 (457)
                      .|.+     .|+++.|+.+| -.+++|..+|.+.|||+++.+...     ...           .+..-+|..+.|.+. 
T Consensus       221 s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~-----~kd-----------h~~e~pi~~l~~~~~~  283 (703)
T KOG2321|consen  221 SHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLL-----VKD-----------HGYELPIKKLDWQDTD  283 (703)
T ss_pred             CCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCcee-----ecc-----------cCCccceeeecccccC
Confidence            3443     49999999998 999999999999999999976431     111           111347888999775 


Q ss_pred             -CCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          339 -GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       339 -g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                       +..+++.+...++|||-.+ +++...+......                ..+|+-|++.+++++.+++.+..|=+...
T Consensus       284 ~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  284 QQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             CCceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecCCCcceeEEcccc
Confidence             5567777669999999986 7877776644432                57899999999999999998888777654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.64  E-value=6.5e-14  Score=136.47  Aligned_cols=243  Identities=14%  Similarity=0.197  Sum_probs=158.6

Q ss_pred             cCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeee
Q 012721           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (457)
Q Consensus        86 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  165 (457)
                      -|+|.+..++.+..|.            ..|..++.. ++.+.+|++||.||+|++|+...-.....             
T Consensus      1033 gW~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~------------- 1086 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGG------------- 1086 (1431)
T ss_pred             CCCccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcc-------------
Confidence            3566778888888888            778888885 46668999999999999999875321100             


Q ss_pred             eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEE
Q 012721          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (457)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iw  244 (457)
                                                              ..++..++ ..-...+.++...+.+..+|.+ .||.|.+.
T Consensus      1087 ----------------------------------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1087 ----------------------------------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred             ----------------------------------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence                                                    00111111 2235578899999999999999 99999999


Q ss_pred             EcCCCcce-eeeeecCCCcccCCCCceEEEEEecCCcc-EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccc
Q 012721          245 NLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (457)
Q Consensus       245 d~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (457)
                      +++..... ...........+.....+..-+|...... .++.+..-+.|..||+++....      +.. ..       
T Consensus      1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~------w~l-k~------- 1191 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA------WRL-KN------- 1191 (1431)
T ss_pred             EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH------Hhh-hc-------
Confidence            99842111 11100010112222233333344433223 7888888899999999986422      221 00       


Q ss_pred             eeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC---CCcE
Q 012721          323 FTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLH  398 (457)
Q Consensus       323 ~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~  398 (457)
                       ....+.|++++.+|.+.+++.|+. |.+.+||++. +.++..+......              ++..+..+|   ....
T Consensus      1192 -~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~--------------~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1192 -QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARA--------------PIRHVWLCPTYPQESV 1255 (1431)
T ss_pred             -CccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCcccC--------------CcceEEeeccCCCCce
Confidence             111378999999999999999987 9999999996 7777766532221              113455444   3345


Q ss_pred             EEEEe--CCCcEEEEecCCCCceeeEEecC
Q 012721          399 FATGS--YSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       399 l~s~~--~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      .++++  ..+.|.+|++.+| .+..++...
T Consensus      1256 ~vs~~~~~~nevs~wn~~~g-~~~~vl~~s 1284 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETG-LRQTVLWAS 1284 (1431)
T ss_pred             EEEecccCCCceeeeecccC-cceEEEEcC
Confidence            55554  4678999999999 666666554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=2.2e-13  Score=128.63  Aligned_cols=215  Identities=13%  Similarity=0.139  Sum_probs=136.2

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCC---CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      ..+.+.+|  +|+|+.|+..+.+   ..|.+||+.+++...+.                                     
T Consensus       196 ~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-------------------------------------  236 (427)
T PRK02889        196 EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-------------------------------------  236 (427)
T ss_pred             CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-------------------------------------
Confidence            66889999  7899998877642   45999999887654321                                     


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                               .....+.+.+|+|||+.|+. . .++...||.++..+.....       +..+..
T Consensus       237 -------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~  284 (427)
T PRK02889        237 -------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR-------LTQSSG  284 (427)
T ss_pred             -------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE-------CCCCCC
Confidence                                     11224457899999998875 4 6777666655422222222       333445


Q ss_pred             ceEEEEEecCCccEEEEEc-cCCeEEEEEcc--CCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          269 VITSAEFHPIYCNLLAYSS-SRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ......|+||| +.|+..+ .+|...+|.+.  +++..    ++...              ........|+|+|++|+..
T Consensus       285 ~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~--------------g~~~~~~~~SpDG~~Ia~~  345 (427)
T PRK02889        285 IDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFT--------------GSYNTSPRISPDGKLLAYI  345 (427)
T ss_pred             CCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCceE----EEecC--------------CCCcCceEECCCCCEEEEE
Confidence            56678899999 7666554 45666777654  32211    11100              1223467899999999865


Q ss_pred             ec----CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC---cEEEEecCCCCc
Q 012721          346 DY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSA  418 (457)
Q Consensus       346 ~~----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~iw~~~~~~~  418 (457)
                      +.    ..|.+||+.. ++. ..+......                ....|+|||++|+..+.++   .+++.++. + .
T Consensus       346 s~~~g~~~I~v~d~~~-g~~-~~lt~~~~~----------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~  405 (427)
T PRK02889        346 SRVGGAFKLYVQDLAT-GQV-TALTDTTRD----------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-R  405 (427)
T ss_pred             EccCCcEEEEEEECCC-CCe-EEccCCCCc----------------cCceECCCCCEEEEEEecCCCEEEEEEECC-C-C
Confidence            42    2699999874 433 233222111                3689999999998877644   35555553 4 4


Q ss_pred             eeeEEecCCCcceeeeeccC
Q 012721          419 GGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       419 ~~~~~~~~~~~v~~~~~~p~  438 (457)
                      ....+..+.+.+..++|+|-
T Consensus       406 ~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        406 IKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ceEEeecCCCCCCCCccCCC
Confidence            55566667788888899874

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.5e-14  Score=124.21  Aligned_cols=240  Identities=15%  Similarity=0.139  Sum_probs=166.6

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      +-|+++.|  +.++.+|++|+.|..+++|+++.--...                                          
T Consensus        57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k------------------------------------------   92 (609)
T KOG4227|consen   57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRK------------------------------------------   92 (609)
T ss_pred             cccceeee--ccCCeEEeecCCcceeeeechHHHHhhc------------------------------------------
Confidence            88999999  7889999999999999999987532111                                          


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                                  ..++++..-..|...|.|++|+.....+++| .+++|.+.|++ ..+.+.++.     -....+.|+.
T Consensus        93 ------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE-t~qsi~V~~-----~~~~~~~VY~  154 (609)
T KOG4227|consen   93 ------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE-TKQSIYVAN-----ENNNRGDVYH  154 (609)
T ss_pred             ------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc-cceeeeeec-----ccCcccceee
Confidence                        1133333335677899999999988999999 99999999999 566665431     1223458999


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEEec-CcE
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNL  350 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~-~~i  350 (457)
                      +..+|.. +.|++.+.++.|.+||.+......   ..+-.           .........+-|+|.. .+|++++. +.+
T Consensus       155 m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~-----------AN~~~~F~t~~F~P~~P~Li~~~~~~~G~  219 (609)
T KOG4227|consen  155 MDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP-----------ANSGKNFYTAEFHPETPALILVNSETGGP  219 (609)
T ss_pred             cccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee-----------cCCCccceeeeecCCCceeEEeccccCCC
Confidence            9999997 999999999999999998754211   11111           1113457788999975 55667766 899


Q ss_pred             EEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC---
Q 012721          351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK---  427 (457)
Q Consensus       351 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---  427 (457)
                      .+||.+++..++....+..+.....      -.+   ....|+|.|..+++--.-..-.+||+-+. .+......|.   
T Consensus       220 ~~~D~R~~~~~~~~~~~~~~L~~~~------~~~---M~~~~~~~G~Q~msiRR~~~P~~~D~~S~-R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  220 NVFDRRMQARPVYQRSMFKGLPQEN------TEW---MGSLWSPSGNQFMSIRRGKCPLYFDFISQ-RCFVLKSDHNPNG  289 (609)
T ss_pred             CceeeccccchHHhhhccccCcccc------hhh---hheeeCCCCCeehhhhccCCCEEeeeecc-cceeEeccCCCCc
Confidence            9999998666665554433321100      001   47899999998887766556667888876 2322222222   


Q ss_pred             ----CcceeeeeccCCc
Q 012721          428 ----NENRKPILQAAPR  440 (457)
Q Consensus       428 ----~~v~~~~~~p~~~  440 (457)
                          ..+.++.|..+..
T Consensus       290 Y~N~~T~KS~~F~~D~~  306 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDDYT  306 (609)
T ss_pred             ceeeeeeeeeeeeccee
Confidence                2456677766654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.8e-13  Score=108.46  Aligned_cols=251  Identities=14%  Similarity=0.218  Sum_probs=159.0

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      +..|.++|+.++|.  ..+|++|+ ||.|+=|......+.   ..+..              .++...  .-|..     
T Consensus        58 eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es---~~~K~--------------lwe~~~--P~~~~-----  110 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES---LATKR--------------LWEVKI--PMQVD-----  110 (325)
T ss_pred             ccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh---ccchh--------------hhhhcC--ccccC-----
Confidence            45699999999999  56777776 599999987654431   00000              001000  00110     


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                       .++. ..|+++...  |..+-++.++.|+.+.-||+++|+....+                                  
T Consensus       111 -~~ev-PeINam~ld--P~enSi~~AgGD~~~y~~dlE~G~i~r~~----------------------------------  152 (325)
T KOG0649|consen  111 -AVEV-PEINAMWLD--PSENSILFAGGDGVIYQVDLEDGRIQREY----------------------------------  152 (325)
T ss_pred             -cccC-CccceeEec--cCCCcEEEecCCeEEEEEEecCCEEEEEE----------------------------------
Confidence             0010 358888884  44455666779999999999999877653                                  


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC--ccc
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS--NMD  264 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~~  264 (457)
                                                 .+|++.|.++.--.....+++| .||++++||.+ +.+.++++..-..  -+.
T Consensus       153 ---------------------------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k-t~k~v~~ie~yk~~~~lR  204 (325)
T KOG0649|consen  153 ---------------------------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK-TQKHVSMIEPYKNPNLLR  204 (325)
T ss_pred             ---------------------------cCCcceeeeeeecccCcceeecCCCccEEEEecc-ccceeEEeccccChhhcC
Confidence                                       7999999999985444566777 99999999999 6666666533211  122


Q ss_pred             CC-CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          265 DL-TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       265 ~~-~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      .| ...|.+++.+.   ..|++|+ ...+.+|+++..+..    .++..              ...+..+.|.  .+.++
T Consensus       205 p~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~t----~vfpi--------------pa~v~~v~F~--~d~vl  260 (325)
T KOG0649|consen  205 PDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSEST----CVFPI--------------PARVHLVDFV--DDCVL  260 (325)
T ss_pred             cccCceeEEEeccC---ceEEecC-CCceeEEeccCCCce----EEEec--------------ccceeEeeee--cceEE
Confidence            23 34567776554   4566654 556899999997654    55554              3567777776  34555


Q ss_pred             EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEe
Q 012721          344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFS  412 (457)
Q Consensus       344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~  412 (457)
                      +++. +.|.-|.+.  +.+...........               ++..|+... ++|-.++..+.+.|+.
T Consensus       261 ~~G~g~~v~~~~l~--Gvl~a~ip~~s~~c---------------~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  261 IGGEGNHVQSYTLN--GVLQANIPVESTAC---------------YSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             Eeccccceeeeeec--cEEEEeccCCccce---------------eeecccCCceEEEEecccceeeeeee
Confidence            5554 889999885  55444444333221               455665443 4455566677777664

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=5.7e-15  Score=128.08  Aligned_cols=182  Identities=16%  Similarity=0.113  Sum_probs=134.2

Q ss_pred             eEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCC
Q 012721          222 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~  300 (457)
                      .+++|+.+|..++++ .||.+++|++.......        ....|...|.++.|+||| ++|++-+.| ..+||+.+++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence            689999999999999 99999999966222222        246688999999999999 999999999 8999999998


Q ss_pred             eeeccccccccccccccCcccceeccccceEEEEEccCC---CeEEEE--ec-CcEEEEeccCCCC-----ceeEeeecc
Q 012721          301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSR--DY-MNLKLWDIRMDST-----PVATFKIHE  369 (457)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g---~~l~s~--~~-~~i~~wd~~~~~~-----~~~~~~~~~  369 (457)
                      ...... .-+.              .......+.|+.++   .+.+.+  .. +.|+.||+.....     ..+.+..++
T Consensus       218 ~~~a~~-t~~~--------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~  282 (398)
T KOG0771|consen  218 AALARK-TPFS--------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK  282 (398)
T ss_pred             chhhhc-CCcc--------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence            322110 0011              12346677888766   333332  33 7888887754222     111122222


Q ss_pred             ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       370 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      .                +.+++.++||+++|.|+.||.|.|++..+-+.....-++|..-|+.+.|+|+.+-..+
T Consensus       283 s----------------iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  283 S----------------ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             c----------------ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence            2                2689999999999999999999999999887777788999999999999999765554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.62  E-value=1e-13  Score=116.46  Aligned_cols=308  Identities=13%  Similarity=0.126  Sum_probs=181.5

Q ss_pred             CCceEEEEECCCCCEEEEE-eCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      -+.|.-+.|+.|..+++.+ ..++.|.+|++...+                           ....+....         
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------------------------w~ckIdeg~---------   91 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------------------------WYCKIDEGQ---------   91 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecce---------------------------eEEEeccCC---------
Confidence            4677778888887666554 678899999987554                           334444444         


Q ss_pred             cccCcEEEEEEEecCCCCEE-EEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          111 EIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                         +++.+++|  +|+|..+ .+...|-.|.+|.+.+.+...+.-.  ...+..++|+                  ++|.
T Consensus        92 ---agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~~~kg~~f~------------------~dg~  146 (447)
T KOG4497|consen   92 ---AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KTNVKGYAFH------------------PDGQ  146 (447)
T ss_pred             ---CcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEeccc--ccCceeEEEC------------------CCCc
Confidence               78999999  7899555 5567899999999988765443211  1111222332                  3333


Q ss_pred             ccccc----ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCcceeeeeecCCCc
Q 012721          190 WTENM----ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       190 ~~~~~----~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                      |..--    ......+........++.+ .-.+...+.+.|+|||..|+.=   -+-.|..|..                
T Consensus       147 f~ai~sRrDCkdyv~i~~c~~W~ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~----------------  209 (447)
T KOG4497|consen  147 FCAILSRRDCKDYVQISSCKAWILLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER----------------  209 (447)
T ss_pred             eeeeeecccHHHHHHHHhhHHHHHHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeee----------------
Confidence            21100    0000111111112233333 3445567889999999876652   2222332222                


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccc----------------------------ccc----c
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS----------------------------ARI----L  310 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~----------------------------~~~----~  310 (457)
                          .-.+..++|+|.+ ++|++|+.|+.+|+.+--+-+.....                            ...    .
T Consensus       210 ----~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~  284 (447)
T KOG4497|consen  210 ----GLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL  284 (447)
T ss_pred             ----ccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence                1346788999998 99999999999988654332111000                            000    0


Q ss_pred             ccc-----------ccccC------cccceeccccceEEEEEccCCCeEEEEec---CcEEEEeccCCCCceeEeeeccc
Q 012721          311 RDA-----------AESHG------SKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       311 ~~~-----------~~~~~------~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---~~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                      +.|           ...+.      +..-+......+.-++|++|..|+++-.|   +.+-+||++. .+....+ ....
T Consensus       285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avL-iQk~  362 (447)
T KOG4497|consen  285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVL-IQKH  362 (447)
T ss_pred             ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhh-hhcc
Confidence            000           00000      00112233456788999999999999865   8899999974 3333332 3333


Q ss_pred             cccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcc
Q 012721          371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  441 (457)
Q Consensus       371 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  441 (457)
                      .+               ....|.|....|+......++++|...-.  ...-..+..-.|..+.|+-+|..
T Consensus       363 pi---------------raf~WdP~~prL~vctg~srLY~W~psg~--~~V~vP~~GF~i~~l~W~~~g~~  416 (447)
T KOG4497|consen  363 PI---------------RAFEWDPGRPRLVVCTGKSRLYFWAPSGP--RVVGVPKKGFNIQKLQWLQPGEF  416 (447)
T ss_pred             ce---------------eEEEeCCCCceEEEEcCCceEEEEcCCCc--eEEecCCCCceeeeEEecCCCcE
Confidence            32               58999999888887777778999987532  33333444467778888766543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.61  E-value=4.9e-14  Score=125.81  Aligned_cols=94  Identities=11%  Similarity=0.198  Sum_probs=79.1

Q ss_pred             CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      .+.|+.++|+|||++||+. .||.++|||.. ..+.+.+       ++..-+...|++|+||| ++|++|++|..|.||.
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~-------mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwS  360 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGV-------MKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWS  360 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHH-------HHhhccceEEEEEcCCc-cEEEecCCcceEEEEE
Confidence            3489999999999999998 99999999998 4444433       45566789999999999 9999999999999999


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  337 (457)
                      +..++..      -.+           .+|.++|+.|+|.|
T Consensus       361 f~erRVV------ARG-----------qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  361 FEERRVV------ARG-----------QGHKSWVSVVAFDP  384 (636)
T ss_pred             eccceEE------Eec-----------cccccceeeEeecc
Confidence            9887532      223           67899999999997

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=1.3e-13  Score=132.54  Aligned_cols=264  Identities=16%  Similarity=0.204  Sum_probs=177.4

Q ss_pred             CCceEEEEECC--CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        32 ~~~V~~~~~s~--~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      ...|+.+.+-.  |..+|++|+.||.|+||+-......                      ..+.++.+.+-+..   + .
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~----------------------~~eLVTaw~~Ls~~---~-~ 1162 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK----------------------KPELVTAWSSLSDQ---L-P 1162 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccC----------------------CceeEEeecccccc---C-c
Confidence            45788888865  4578999999999999985433210                      12234443332210   0 0


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                      ...+.. .-+.|  .....+|++++.-..|+|||.+......-+......-+++++-....|.++..+.           
T Consensus      1163 ~~r~~~-~v~dW--qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf----------- 1228 (1387)
T KOG1517|consen 1163 GARGTG-LVVDW--QQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF----------- 1228 (1387)
T ss_pred             cCCCCC-eeeeh--hhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee-----------
Confidence            001112 44577  3444466776668999999999988777776666666666666666665554443           


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCC--eeEEEeCCCCCE-EEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFN--INSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                        .++.+++||.........+..+ ..|...  |..+.+.+.|-- |++| .||.|++||++.. .....++     ...
T Consensus      1229 --aDGsvRvyD~R~a~~ds~v~~~-R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~-----iv~ 1299 (1387)
T KOG1517|consen 1229 --ADGSVRVYDRRMAPPDSLVCVY-REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLT-----IVA 1299 (1387)
T ss_pred             --cCCceEEeecccCCccccceee-cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccce-----eee
Confidence              4678999999877665566666 788887  999999886654 8888 9999999999942 2222211     122


Q ss_pred             C---CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721          266 L---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (457)
Q Consensus       266 ~---~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l  342 (457)
                      |   .+..+++..++.. ..+|+|+. +.|+||++...++.     .+.. .     ..++....+.+.+++|+|---++
T Consensus      1300 ~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~-----~~k~-n-----~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLN-----IIKY-N-----PGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred             ccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhc-----cccc-C-----cccccCcCCCcceeeecchhHhh
Confidence            2   2358999999998 99999998 99999999875432     1211 0     11112224678999999998889


Q ss_pred             EEEec-CcEEEEeccC
Q 012721          343 LSRDY-MNLKLWDIRM  357 (457)
Q Consensus       343 ~s~~~-~~i~~wd~~~  357 (457)
                      |+|.. ..|.||....
T Consensus      1367 AaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             hhccCCceEEEeecCC
Confidence            98864 9999998753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=8.5e-14  Score=115.66  Aligned_cols=148  Identities=20%  Similarity=0.279  Sum_probs=103.4

Q ss_pred             eEEEeCCCCCEEEEe-C----------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEE--Ecc
Q 012721          222 NSISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY--SSS  288 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~--~~~  288 (457)
                      ..+.|+|+|.+|+.- .          -+...+|.++..+.....+.     +. ..++|.+++|+|+| +.|++  |..
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-----l~-~~~~I~~~~WsP~g-~~favi~g~~   81 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-----LK-KEGPIHDVAWSPNG-NEFAVIYGSM   81 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-----cc-CCCceEEEEECcCC-CEEEEEEccC
Confidence            367899999888763 2          13456666653344443322     12 33569999999999 65543  446


Q ss_pred             CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--c--CcEEEEeccCCCCceeE
Q 012721          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVAT  364 (457)
Q Consensus       289 dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~--~~i~~wd~~~~~~~~~~  364 (457)
                      ++.|.+||++... .    ..+.               ...+..+.|+|+|++|+.++  +  |.|.+||.+. .+.+..
T Consensus        82 ~~~v~lyd~~~~~-i----~~~~---------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~  140 (194)
T PF08662_consen   82 PAKVTLYDVKGKK-I----FSFG---------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKIST  140 (194)
T ss_pred             CcccEEEcCcccE-e----Eeec---------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeec
Confidence            7899999997321 1    2222               25678899999999999875  2  7899999984 566655


Q ss_pred             eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC------CCcEEEEecC
Q 012721          365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG  414 (457)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~------dg~i~iw~~~  414 (457)
                      .. |...                +.++|+|||++|+++..      |+.++||+..
T Consensus       141 ~~-~~~~----------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  141 FE-HSDA----------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cc-cCcE----------------EEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            54 2222                58999999999998874      7889999985

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.59  E-value=3.6e-14  Score=126.67  Aligned_cols=190  Identities=13%  Similarity=0.060  Sum_probs=132.6

Q ss_pred             CCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeec-
Q 012721          227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-  304 (457)
Q Consensus       227 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~-  304 (457)
                      .|++--+..| .-|.|.+.|.. ..+..+.+...   ..-....++|+.|-|.++.+++.+-.+|.+.+||........ 
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~-~~~~sklfne~---r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~  257 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPI-NFEVSKLFNEE---RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA  257 (636)
T ss_pred             CCCCcceEEeeccCceEEecch-hhHHHHhhhhc---ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence            3567778889 88999999887 33322222111   111236799999999887888889999999999874211000 


Q ss_pred             ------cccccccccc----cccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeecccccc
Q 012721          305 ------HSARILRDAA----ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRP  373 (457)
Q Consensus       305 ------~~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~  373 (457)
                            +....|..+.    ....+...+.--.+.|...+|+|||++||+.+ ||.++|+|..+ .+++..++..-+.. 
T Consensus       258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGL-  335 (636)
T KOG2394|consen  258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGL-  335 (636)
T ss_pred             CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccce-
Confidence                  0000111100    00011222333346899999999999999876 59999999975 55555544332221 


Q ss_pred             ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeecc
Q 012721          374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  437 (457)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p  437 (457)
                                    ++++|||||+||++|++|-.|.||.+... +.+..-++|++.|..|+|-|
T Consensus       336 --------------LCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  336 --------------LCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             --------------EEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence                          69999999999999999999999999988 77888899999999999985

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=3.2e-13  Score=127.36  Aligned_cols=215  Identities=12%  Similarity=0.094  Sum_probs=136.9

Q ss_pred             ccCCceEEEEECCCCCEEEEEe---CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGD---RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      .+.+.+.+.+|||||+.||..+   .+..|.+|++.+++..                         .+..+.++      
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------------------------~l~~~~~~------  244 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-------------------------QVASFPRH------  244 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EccCCCCC------
Confidence            3566899999999999998654   2347899998776531                         22233333      


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEe-eCCC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~-s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                               +..+.|  +|||+.|+.. +.++  .|.+||+.+++...+                               
T Consensus       245 ---------~~~~~~--SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-------------------------------  282 (429)
T PRK03629        245 ---------NGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-------------------------------  282 (429)
T ss_pred             ---------cCCeEE--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-------------------------------
Confidence                     345789  7899988765 4444  588888877654432                               


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCe--EEEEEcCCCcceeeeeecC
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMK  259 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~  259 (457)
                                                     ..+...+....|+|||+.|+..  .++.  |+++|+. .+...++    
T Consensus       283 -------------------------------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~g~~~~l----  326 (429)
T PRK03629        283 -------------------------------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-GGAPQRI----  326 (429)
T ss_pred             -------------------------------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-CCCeEEe----
Confidence                                           1223356678999999988765  3444  4444665 3333322    


Q ss_pred             CCcccCCCCceEEEEEecCCccEEEEEccC---CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  336 (457)
                          ...........|+|+| +.|+..+.+   ..|.+||+.+++..     .+..              ........|+
T Consensus       327 ----t~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~-----~Lt~--------------~~~~~~p~~S  382 (429)
T PRK03629        327 ----TWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQ-----VLTD--------------TFLDETPSIA  382 (429)
T ss_pred             ----ecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCeE-----EeCC--------------CCCCCCceEC
Confidence                1222345578899999 777665533   35888998876432     1111              0123357899


Q ss_pred             cCCCeEEEEe-c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC
Q 012721          337 NDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (457)
Q Consensus       337 ~~g~~l~s~~-~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  394 (457)
                      |||++|+.++ +   ..+.++++.  +.....+..|.+.+               ...+|+|
T Consensus       383 pDG~~i~~~s~~~~~~~l~~~~~~--G~~~~~l~~~~~~~---------------~~p~Wsp  427 (429)
T PRK03629        383 PNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQV---------------KFPAWSP  427 (429)
T ss_pred             CCCCEEEEEEcCCCceEEEEEECC--CCCeEECccCCCCc---------------CCcccCC
Confidence            9999998765 3   246777774  66666776666543               4678886

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=2.1e-12  Score=108.35  Aligned_cols=248  Identities=14%  Similarity=0.148  Sum_probs=155.5

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc--cc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE--WT  191 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  191 (457)
                      ....+++|  +.|...+++|..+| .++|+++--+........... ..-+.+..         ...-.++.-.+.  --
T Consensus         6 ~~~lsvs~--NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G-~~~veMLf---------R~N~laLVGGg~~pky   72 (346)
T KOG2111|consen    6 PKTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG-FKIVEMLF---------RSNYLALVGGGSRPKY   72 (346)
T ss_pred             CceeEEEE--ccCCceEEEEecCc-eEEEecCchhhhhhhccccCc-hhhhhHhh---------hhceEEEecCCCCCCC
Confidence            34666899  67887888888777 899998753221111111000 00000000         000011111111  01


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                      +...+.+||-   ...+++..+  ....+|.++.+.+  ..|++...+.|++|.....-+.+..++..     .......
T Consensus        73 ~pNkviIWDD---~k~~~i~el--~f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~-----~NPkGlC  140 (346)
T KOG2111|consen   73 PPNKVIIWDD---LKERCIIEL--SFNSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETR-----SNPKGLC  140 (346)
T ss_pred             CCceEEEEec---ccCcEEEEE--EeccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecc-----cCCCceE
Confidence            2236889993   233444443  4567888988874  46777788999999988555555544322     1112233


Q ss_pred             EEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721          272 SAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~  349 (457)
                      +++-+.+. .+||.-+ .-|.|+|-|+...+..               ....+.+|.+.|.+++++.+|..+|+++. |+
T Consensus       141 ~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~---------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT  204 (346)
T KOG2111|consen  141 SLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPN---------------APSIINAHDSDIACVALNLQGTLVATASTKGT  204 (346)
T ss_pred             eecCCCCc-eEEEcCCCccceEEEEEhhhcCcC---------------CceEEEcccCceeEEEEcCCccEEEEeccCcE
Confidence            33333333 4555544 5699999998874311               12335778999999999999999999986 55


Q ss_pred             -EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          350 -LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       350 -i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                       |||||..+ +.++..++......             ++++++|||++.+||++|+.|+|+|+.+...
T Consensus       205 LIRIFdt~~-g~~l~E~RRG~d~A-------------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  205 LIRIFDTED-GTLLQELRRGVDRA-------------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEEEcCC-CcEeeeeecCCchh-------------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence             79999986 88888877544332             2369999999999999999999999999864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=4.3e-13  Score=115.38  Aligned_cols=255  Identities=14%  Similarity=0.124  Sum_probs=168.7

Q ss_pred             cCCceEEEEECCCC--CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        31 h~~~V~~~~~s~~~--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ....|++++|..++  +.|...+.+..+..+........                     ++..-+.+.....       
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~---------------------s~~~~~~~~~l~~-------  105 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS---------------------SSLDDAKTVSLGT-------  105 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccc---------------------ccccccccccccc-------
Confidence            35678888887665  34444445656666666554421                     0000011112222       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ++|..++.   .++ .|++|-.+|.+.+|....+.....                                    
T Consensus       106 -----~~I~gl~~---~dg-~Litc~~sG~l~~~~~k~~d~hss------------------------------------  140 (412)
T KOG3881|consen  106 -----KSIKGLKL---ADG-TLITCVSSGNLQVRHDKSGDLHSS------------------------------------  140 (412)
T ss_pred             -----ccccchhh---cCC-EEEEEecCCcEEEEeccCCccccc------------------------------------
Confidence                 67777776   455 788888999999999886542100                                    


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEE-EEe-CC--CeEEEEEcCCCcceeeeeecCCC--c
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DD--LRINLWNLEISDQCFNIVDMKPS--N  262 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~--~  262 (457)
                                          ++..  ..-...+..+.-++....| ++| ..  ..+++||++..   .++|..+..  .
T Consensus       141 --------------------~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD  195 (412)
T KOG3881|consen  141 --------------------KLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPND  195 (412)
T ss_pred             --------------------ccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCc
Confidence                                0000  0111345566666655555 446 66  89999999843   444433321  1


Q ss_pred             ccC--CCCceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721          263 MDD--LTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (457)
Q Consensus       263 ~~~--~~~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  338 (457)
                      .-+  -.-+++++.|-+.  . ..|+++..-+.+++||.+.+...   +..+.             -...+++++...|+
T Consensus       196 ~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRP---V~~fd-------------~~E~~is~~~l~p~  258 (412)
T KOG3881|consen  196 RLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRP---VAQFD-------------FLENPISSTGLTPS  258 (412)
T ss_pred             cccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcc---eeEec-------------cccCcceeeeecCC
Confidence            111  1245678888876  5 79999999999999999976421   12222             12468999999999


Q ss_pred             CCeEEEEec-CcEEEEeccCCCCceeE-eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          339 GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       339 g~~l~s~~~-~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      |++|++|+. +.+..+|++. ++.+.. +.+-.+.+               .++..+|.+++|++++-|..|+|+|+++.
T Consensus       259 gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi---------------rsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  259 GNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI---------------RSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             CcEEEEecccchhheecccC-ceeeccccCCccCCc---------------ceEEEcCCCceEEeeccceeEEEeecccc
Confidence            999999987 9999999986 666555 66666654               68999999999999999999999999985

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=5.4e-13  Score=125.99  Aligned_cols=208  Identities=14%  Similarity=0.179  Sum_probs=129.4

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ..+.+.+.+.+|+|||+.||..+.+   ..|.+||+.+++..                         .+..+.       
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-------------------------~l~~~~-------  239 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-------------------------VVANFK-------  239 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-------------------------EeecCC-------
Confidence            4567889999999999999877642   35999999877531                         111122       


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEE-EeeCCCeEEEEEec--ccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~-s~s~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                              +.+...+|  +|+|+.|+ +.+.++...+|.++  ++....+                              
T Consensus       240 --------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------  279 (427)
T PRK02889        240 --------GSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNADGSGLRRL------------------------------  279 (427)
T ss_pred             --------CCccceEE--CCCCCEEEEEEccCCCceEEEEECCCCCcEEC------------------------------
Confidence                    33567889  78998876 46778877777654  3322111                              


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCC-CcceeeeeecC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEI-SDQCFNIVDMK  259 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~-~~~~~~~~~~~  259 (457)
                                                      ..+........|+|||+.|+..  .++...+|.+.. .+....+.   
T Consensus       280 --------------------------------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt---  324 (427)
T PRK02889        280 --------------------------------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT---  324 (427)
T ss_pred             --------------------------------CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe---
Confidence                                            2233345567899999988764  456666666542 22222221   


Q ss_pred             CCcccCCCCceEEEEEecCCccEEEEEccCC---eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  336 (457)
                         +.+  ......+|+|+| ++|+..+.++   .|.+||+.+++..    .+...               .....+.|+
T Consensus       325 ---~~g--~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~----~lt~~---------------~~~~~p~~s  379 (427)
T PRK02889        325 ---FTG--SYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVT----ALTDT---------------TRDESPSFA  379 (427)
T ss_pred             ---cCC--CCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeE----EccCC---------------CCccCceEC
Confidence               122  223467899999 8887766544   6999999876432    11111               123567999


Q ss_pred             cCCCeEEEEec--Cc--EEEEeccCCCCceeEeeeccc
Q 012721          337 NDGQHLLSRDY--MN--LKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       337 ~~g~~l~s~~~--~~--i~~wd~~~~~~~~~~~~~~~~  370 (457)
                      |||++|+..++  |.  +.+.++  .+.....+..+.+
T Consensus       380 pdg~~l~~~~~~~g~~~l~~~~~--~g~~~~~l~~~~g  415 (427)
T PRK02889        380 PNGRYILYATQQGGRSVLAAVSS--DGRIKQRLSVQGG  415 (427)
T ss_pred             CCCCEEEEEEecCCCEEEEEEEC--CCCceEEeecCCC
Confidence            99999986642  33  455555  3555555654444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=1.2e-14  Score=127.51  Aligned_cols=218  Identities=13%  Similarity=0.118  Sum_probs=171.5

Q ss_pred             EEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (457)
Q Consensus       116 V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (457)
                      -..+.|  +.+|.+++.++..|.|..+|..++++...+.                                         
T Consensus       132 PY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-----------------------------------------  168 (545)
T KOG1272|consen  132 PYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-----------------------------------------  168 (545)
T ss_pred             Ceeeee--cCCccEEEecCCccceeeeecccceeeeeee-----------------------------------------
Confidence            456778  7899999999999999999999987654422                                         


Q ss_pred             eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE
Q 012721          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  275 (457)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  275 (457)
                                           -...|..+.|-.+.+++|++..+.++|||-. +-+...        ++.| ..|..+.|
T Consensus       169 ---------------------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHC--------lk~~-~~v~rLeF  217 (545)
T KOG1272|consen  169 ---------------------VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHC--------LKRH-IRVARLEF  217 (545)
T ss_pred             ---------------------hhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEee--------hhhc-Cchhhhcc
Confidence                                 2236778888888889999999999999977 333332        2333 56889999


Q ss_pred             ecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEe
Q 012721          276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD  354 (457)
Q Consensus       276 ~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd  354 (457)
                      -|.. -+|++++..|.++.-|+.+|++..    .+..             -.+.+..++-+|-.-.+-.|.. |+|.+|.
T Consensus       218 LPyH-fLL~~~~~~G~L~Y~DVS~GklVa----~~~t-------------~~G~~~vm~qNP~NaVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  218 LPYH-FLLVAASEAGFLKYQDVSTGKLVA----SIRT-------------GAGRTDVMKQNPYNAVIHLGHSNGTVSLWS  279 (545)
T ss_pred             cchh-heeeecccCCceEEEeechhhhhH----HHHc-------------cCCccchhhcCCccceEEEcCCCceEEecC
Confidence            9998 899999999999999999997552    1211             1356778888888878888855 9999999


Q ss_pred             ccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeee
Q 012721          355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI  434 (457)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~  434 (457)
                      ..+ .+++..+..|.+.+               .++++.++|+|+||.+.|..++|||+++-. .+.+... ..+...++
T Consensus       280 P~s-kePLvKiLcH~g~V---------------~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~t-p~~a~~ls  341 (545)
T KOG1272|consen  280 PNS-KEPLVKILCHRGPV---------------SSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLHTYRT-PHPASNLS  341 (545)
T ss_pred             CCC-cchHHHHHhcCCCc---------------ceEEECCCCcEEeecccccceeEeeecccc-ccceeec-CCCccccc
Confidence            986 78888888899876               599999999999999999999999999884 4444444 56777788


Q ss_pred             eccCCccee
Q 012721          435 LQAAPRARR  443 (457)
Q Consensus       435 ~~p~~~~~~  443 (457)
                      +|-.+.-++
T Consensus       342 ~SqkglLA~  350 (545)
T KOG1272|consen  342 LSQKGLLAL  350 (545)
T ss_pred             cccccceee
Confidence            877655444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=5.1e-13  Score=126.60  Aligned_cols=207  Identities=13%  Similarity=0.102  Sum_probs=130.1

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ..+...+.+.+|+|||+.|+..+.+   ..|.+|++.+++..                         .   +....    
T Consensus       200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-------------------------~---l~~~~----  247 (433)
T PRK04922        200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-------------------------L---VASFR----  247 (433)
T ss_pred             ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-------------------------E---eccCC----
Confidence            3466789999999999999887633   46999999776531                         1   11222    


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEE-eeCCC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                              +...+.+|  +|+|+.++. .+.++  .|.+||+.+++...+                              
T Consensus       248 --------g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l------------------------------  287 (433)
T PRK04922        248 --------GINGAPSF--SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL------------------------------  287 (433)
T ss_pred             --------CCccCceE--CCCCCEEEEEEeCCCCceEEEEECCCCCeEEC------------------------------
Confidence                    23446788  789987764 45555  588888877754332                              


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCe--EEEEEcCCCcceeeeeec
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDM  258 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~  258 (457)
                                                      ..+.......+|+|||+.|+.+  .++.  |+++|+. .++...+.  
T Consensus       288 --------------------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~lt--  332 (433)
T PRK04922        288 --------------------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAERLT--  332 (433)
T ss_pred             --------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEee--
Confidence                                            2233334567999999988775  4444  6666766 33333221  


Q ss_pred             CCCcccCCCCceEEEEEecCCccEEEEEccCC---eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (457)
Q Consensus       259 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  335 (457)
                          .  +......++|+|+| +.|+..+.++   .|.+||+.+++..     .+..              ........|
T Consensus       333 ----~--~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt~--------------~~~~~~p~~  386 (433)
T PRK04922        333 ----F--QGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLTP--------------GSLDESPSF  386 (433)
T ss_pred             ----c--CCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE-----ECCC--------------CCCCCCceE
Confidence                1  22334568999999 7777665332   6999999876432     1111              112345689


Q ss_pred             ccCCCeEEEEec----CcEEEEeccCCCCceeEeeeccc
Q 012721          336 ANDGQHLLSRDY----MNLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       336 s~~g~~l~s~~~----~~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                      +|||++|+..++    ..|.++++.  +.....+..+.+
T Consensus       387 spdG~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~g  423 (433)
T PRK04922        387 APNGSMVLYATREGGRGVLAAVSTD--GRVRQRLVSADG  423 (433)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECC--CCceEEcccCCC
Confidence            999998885532    457777774  555555554433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=7.1e-14  Score=118.03  Aligned_cols=178  Identities=13%  Similarity=0.116  Sum_probs=130.0

Q ss_pred             CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC-CccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721          231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (457)
Q Consensus       231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~  308 (457)
                      ..++++ .+|.|++||.. .++.+..       ++++...+..+.|..+ ++..+.+++.||+|++||+|......  ..
T Consensus        41 ~~vav~lSngsv~lyd~~-tg~~l~~-------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--~~  110 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKG-TGQLLEE-------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--RI  110 (376)
T ss_pred             eeEEEEecCCeEEEEecc-chhhhhe-------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--he
Confidence            567888 99999999999 4666654       6778888888888764 55789999999999999999864321  11


Q ss_pred             cccccccccCcccceeccc-cceEEEEEccCCCeEEEEe-----cCcEEEEeccCCCCceeEee-eccccccccccccCC
Q 012721          309 ILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRD-----YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNN  381 (457)
Q Consensus       309 ~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~-----~~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~  381 (457)
                      .+..             +. .+..+++....++.+++|+     +-.|.+||+++..+++..+. .|..-          
T Consensus       111 ~~~~-------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD----------  167 (376)
T KOG1188|consen  111 SWTQ-------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD----------  167 (376)
T ss_pred             eccC-------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc----------
Confidence            1222             12 3567777777888998875     36799999998666565544 45543          


Q ss_pred             CCccccceEEEcCC-CcEEEEEeCCCcEEEEecCCCCce--eeEEecCCCcceeeeeccCCcceeccc
Q 012721          382 DSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAG--GITVEAGKNENRKPILQAAPRARRSSL  446 (457)
Q Consensus       382 ~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~~~~~  446 (457)
                           |+++.|+|. .++|++|+.||.|.|||++.....  +...-.|.+.|..+.|+..+=.+.+.+
T Consensus       168 -----VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~cl  230 (376)
T KOG1188|consen  168 -----VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCL  230 (376)
T ss_pred             -----ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEE
Confidence                 389999995 679999999999999999755322  233345677788999998874444433

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.56  E-value=4.4e-14  Score=118.67  Aligned_cols=225  Identities=21%  Similarity=0.336  Sum_probs=144.1

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcE
Q 012721           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (457)
Q Consensus        37 ~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V  116 (457)
                      -++|||+|+++|+.+.- .+.|-|..+.+..                           ..+.. -            +.|
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~---------------------------qlf~c-l------------dki   51 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH---------------------------QLFLC-L------------DKI   51 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHH---------------------------HHHHH-H------------HHh
Confidence            46799999999998865 7888887766532                           00110 1            568


Q ss_pred             EEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721          117 NRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (457)
Q Consensus       117 ~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (457)
                      ..+.|  +.+..++++ ...|+.|.+|++...+....+                                          
T Consensus        52 ~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI------------------------------------------   87 (447)
T KOG4497|consen   52 VYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWYCKI------------------------------------------   87 (447)
T ss_pred             hheee--eccceeeeeeeeccceEEEEEeecceeEEEe------------------------------------------
Confidence            88999  577766665 568889999999876654433                                          


Q ss_pred             eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (457)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v  273 (457)
                                         ......+.+++|+|||+.+. ++ .|-.|.+|.+.+ .....+        +-....+..+
T Consensus        88 -------------------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t-~~~~~~--------~~pK~~~kg~  139 (447)
T KOG4497|consen   88 -------------------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT-QKGYLL--------PHPKTNVKGY  139 (447)
T ss_pred             -------------------ccCCCcceeeeECCCcceEeeeecceeEEEEEEecc-ceeEEe--------cccccCceeE
Confidence                               34456788999999996655 46 899999999984 333322        2223445788


Q ss_pred             EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEE
Q 012721          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  353 (457)
Q Consensus       274 ~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~w  353 (457)
                      +|+|+| ++.+..+.-.....+++...+.-    .++..          +.-.+-..+.+.|+|||..||.        |
T Consensus       140 ~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W----~ll~~----------f~~dT~DltgieWsPdg~~laV--------w  196 (447)
T KOG4497|consen  140 AFHPDG-QFCAILSRRDCKDYVQISSCKAW----ILLKE----------FKLDTIDLTGIEWSPDGNWLAV--------W  196 (447)
T ss_pred             EECCCC-ceeeeeecccHHHHHHHHhhHHH----HHHHh----------cCCCcccccCceECCCCcEEEE--------e
Confidence            999999 98888775422222222211000    01111          1111245788999999977764        5


Q ss_pred             eccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      |.-.+.+ +..+...-+.                ..++|+|-+++|+.|+.|+.+++-+--
T Consensus       197 d~~Leyk-v~aYe~~lG~----------------k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  197 DNVLEYK-VYAYERGLGL----------------KFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             cchhhhe-eeeeeeccce----------------eEEEeccccceEEeeccchhhhhhcee
Confidence            4322111 1112111111                479999999999999999999886543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=5e-15  Score=138.55  Aligned_cols=232  Identities=17%  Similarity=0.218  Sum_probs=172.8

Q ss_pred             ceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccc
Q 012721           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (457)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (457)
                      +.++.+.||-            .+|.|+.|  ...|.++++|+.|..++||..+++.+...                   
T Consensus       181 k~ikrLlgH~------------naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs-------------------  227 (1113)
T KOG0644|consen  181 KNIKRLLGHR------------NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLAS-------------------  227 (1113)
T ss_pred             HHHHHHHhhh------------hheeeeee--ccccceEeecCccceeeeeeccchhhhcc-------------------
Confidence            4555677787            88999999  78999999999999999999888765432                   


Q ss_pred             cccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc
Q 012721          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  250 (457)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~  250 (457)
                                                                ..||.+.|+.++.+.+..+++++ .|..|++|.+. .+
T Consensus       228 ------------------------------------------~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-~~  264 (1113)
T KOG0644|consen  228 ------------------------------------------CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-DG  264 (1113)
T ss_pred             ------------------------------------------CCCCccccchhccchhhhhhhhcccCceEEEEecC-CC
Confidence                                                      17999999999999988889998 99999999998 67


Q ss_pred             ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccce
Q 012721          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (457)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  330 (457)
                      ..+.+       +.+|++.|++++|+|..     +.+.||++++||.+-.-      ..+...+..+.       -..-+
T Consensus       265 ~pvsv-------LrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~prp~~~~-------~~~~~  319 (1113)
T KOG0644|consen  265 APVSV-------LRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVPRPLKFT-------EKDLV  319 (1113)
T ss_pred             chHHH-------HhccccceeeeccCccc-----cCCCCCceEeccccccc------cccCCCCCCcc-------cccce
Confidence            66665       78999999999999963     67899999999998211      11111000000       02456


Q ss_pred             EEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcEEEEEeCCCcE
Q 012721          331 SDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLL  408 (457)
Q Consensus       331 ~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i  408 (457)
                      .++.|..++.-++++++ +.-..|.+..       +..+....               .-+.++.| ..+.+++-.+-.+
T Consensus       320 ~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-------l~~~~~~l---------------if~t~ssd~~~~~~~ar~~~~~  377 (1113)
T KOG0644|consen  320 DSILFENNGDRFLTGSRDGEARNHEFEQ-------LAWRSNLL---------------IFVTRSSDLSSIVVTARNDHRL  377 (1113)
T ss_pred             eeeeccccccccccccCCcccccchhhH-------hhhhccce---------------EEEeccccccccceeeeeeeEe
Confidence            77788888888888875 8778777643       11111110               01112222 2466777788899


Q ss_pred             EEEecCCCCceeeEEecCCCcceeeeeccCCcceecccc
Q 012721          409 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS  447 (457)
Q Consensus       409 ~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~  447 (457)
                      .+|++.+| .....+.+|..++..+.+||-.|-...+.+
T Consensus       378 ~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri~msag  415 (1113)
T KOG0644|consen  378 CVWNLYTG-QLLHNLMGHSDEVYVLDVHPFNPRIAMSAG  415 (1113)
T ss_pred             eeeecccc-hhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence            99999999 778889999999999999999887766444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=1.2e-12  Score=108.81  Aligned_cols=117  Identities=13%  Similarity=0.251  Sum_probs=87.1

Q ss_pred             CCCCeeEEEeCCCCCEEEE--e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc---CC
Q 012721          217 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG  290 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---dg  290 (457)
                      ..++|.+++|+|+|+.|++  | .+..|.+||++  .+.+..       +  +...+..+.|+|+| ++|++++.   .|
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~-------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G  125 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFS-------F--GTQPRNTISWSPDG-RFLVLAGFGNLNG  125 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEe-------e--cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence            4457999999999998765  4 67899999997  333322       1  33567889999999 99988864   47


Q ss_pred             eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-------cCcEEEEeccCCCCcee
Q 012721          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA  363 (457)
Q Consensus       291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-------~~~i~~wd~~~~~~~~~  363 (457)
                      .|.+||+++.+..    ...+.               ..++.++|+|+|++++++.       |+.++||+..  ++.+.
T Consensus       126 ~l~~wd~~~~~~i----~~~~~---------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~  184 (194)
T PF08662_consen  126 DLEFWDVRKKKKI----STFEH---------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY  184 (194)
T ss_pred             EEEEEECCCCEEe----ecccc---------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence            7999999976543    22222               3578999999999999763       4788999985  66665


Q ss_pred             Eee
Q 012721          364 TFK  366 (457)
Q Consensus       364 ~~~  366 (457)
                      ...
T Consensus       185 ~~~  187 (194)
T PF08662_consen  185 KKP  187 (194)
T ss_pred             ecc
Confidence            543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.53  E-value=4.2e-10  Score=103.34  Aligned_cols=272  Identities=12%  Similarity=0.130  Sum_probs=161.2

Q ss_pred             CCceEEEEECCCCCEEEEEeC----CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      .....-++++|++++|.+...    +|.|..|++....-                       ..+.+.......      
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-----------------------~L~~~~~~~~~g------   86 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-----------------------TLTLLNSVPSGG------   86 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-----------------------EEEEEEEEEESS------
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-----------------------eeEEeeeeccCC------
Confidence            456677899999999988866    57899999876411                       011222222111      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEEecc-cceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                            .....+++  ++++.+|+++. .+|.|.++++.. +.........                             
T Consensus        87 ------~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~-----------------------------  129 (345)
T PF10282_consen   87 ------SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTV-----------------------------  129 (345)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEE-----------------------------
T ss_pred             ------CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeec-----------------------------
Confidence                  33456777  78999988887 589999999987 4443321100                             


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeee-eecCCCc
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI-VDMKPSN  262 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~  262 (457)
                                    ....... ..    .........++.++|+++++++.  ....|.+|+++.....+.. ...   .
T Consensus       130 --------------~~~g~g~-~~----~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~---~  187 (345)
T PF10282_consen  130 --------------RHEGSGP-NP----DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI---K  187 (345)
T ss_dssp             --------------ESEEEES-ST----TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE---E
T ss_pred             --------------ccCCCCC-cc----cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc---c
Confidence                          0000000 00    01223457889999999988886  6779999999843321211 100   1


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEcc--CCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                      + ........+.|+|++....++...++.|.+|++.  .+...  .......   .+.   .+. .......+.++|||+
T Consensus       188 ~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~~---~~~---~~~-~~~~~~~i~ispdg~  257 (345)
T PF10282_consen  188 V-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT--EIQTIST---LPE---GFT-GENAPAEIAISPDGR  257 (345)
T ss_dssp             C-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE--EEEEEES---CET---TSC-SSSSEEEEEE-TTSS
T ss_pred             c-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee--EEEEeee---ccc---ccc-ccCCceeEEEecCCC
Confidence            2 2345578999999994455666688999999998  33221  1111111   000   000 012578899999999


Q ss_pred             eEEEEe--cCcEEEEeccCCCCceeE---eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecC
Q 012721          341 HLLSRD--YMNLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG  414 (457)
Q Consensus       341 ~l~s~~--~~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~  414 (457)
                      +|.++.  .+.|.+|+++.....+..   +..... .+              +.++++|+|++|++++. ++.|.+|+++
T Consensus       258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~-~P--------------r~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK-FP--------------RHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS-SE--------------EEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC-Cc--------------cEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            999875  389999999532222322   222111 11              58999999999998875 6789999774


Q ss_pred             --CC
Q 012721          415 --VG  416 (457)
Q Consensus       415 --~~  416 (457)
                        +|
T Consensus       323 ~~tG  326 (345)
T PF10282_consen  323 PDTG  326 (345)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence              55

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=8.1e-13  Score=113.74  Aligned_cols=209  Identities=16%  Similarity=0.153  Sum_probs=153.7

Q ss_pred             CCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC--CeE
Q 012721          216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--GFV  292 (457)
Q Consensus       216 ~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--g~i  292 (457)
                      ....+|..++.. | ..|++| .+|.+.+|..+... ....   ++..+. ....+..+.-++..+.++++|+..  ..+
T Consensus       103 l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d-~hss---~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~l  175 (412)
T KOG3881|consen  103 LGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGD-LHSS---KLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINEL  175 (412)
T ss_pred             cccccccchhhc-C-CEEEEEecCCcEEEEeccCCc-cccc---cceeee-cCCceeeeccCCCCCceEecCchhcccce
Confidence            344566666654 3 467777 99999999988322 1100   000122 224466677777776788889988  889


Q ss_pred             EEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC--CCeEEEEec-CcEEEEeccCCCCceeEeeecc
Q 012721          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHE  369 (457)
Q Consensus       293 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~  369 (457)
                      .+||+.+.+      ++|......+..-...  -.-+++++.|-+.  ...+|+++. +.+++||.+.+.+++..+...+
T Consensus       176 kiwdle~~~------qiw~aKNvpnD~L~Lr--VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E  247 (412)
T KOG3881|consen  176 KIWDLEQSK------QIWSAKNVPNDRLGLR--VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE  247 (412)
T ss_pred             eeeecccce------eeeeccCCCCccccce--eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc
Confidence            999999874      4554411111110000  0235678889887  788888886 9999999998888999988777


Q ss_pred             ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecccccc
Q 012721          370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL  449 (457)
Q Consensus       370 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~  449 (457)
                      ..+               +++...|++++|++|..-+.+..||++.++.....+.+..+.++++..||..|-.++  ..+
T Consensus       248 ~~i---------------s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las--~GL  310 (412)
T KOG3881|consen  248 NPI---------------SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLAS--CGL  310 (412)
T ss_pred             Ccc---------------eeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEe--ecc
Confidence            665               688999999999999999999999999996666669999999999999999999999  899


Q ss_pred             ccccccC
Q 012721          450 TRGLYRQ  456 (457)
Q Consensus       450 ~~~~~~~  456 (457)
                      +|..|-.
T Consensus       311 DRyvRIh  317 (412)
T KOG3881|consen  311 DRYVRIH  317 (412)
T ss_pred             ceeEEEe
Confidence            9998853

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.1e-11  Score=117.40  Aligned_cols=212  Identities=15%  Similarity=0.185  Sum_probs=129.5

Q ss_pred             CcEEEEEEEecCCCCEEEEeeC-CC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILSTN-DK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~-d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      ..+....|  +|||+.|+..+. ++  .|.+||+.+++...+..                                    
T Consensus       218 ~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------------------------------------  259 (448)
T PRK04792        218 EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------------------------------------  259 (448)
T ss_pred             CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC------------------------------------
Confidence            56788999  789998887653 32  57778887765433211                                    


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                ........+|+|||+.|+..  .++  .|+++|+. .++..+        +..+
T Consensus       260 --------------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~--------lt~~  304 (448)
T PRK04792        260 --------------------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTR--------ITRH  304 (448)
T ss_pred             --------------------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEE--------CccC
Confidence                                      11123367899999988763  555  47778887 444332        2334


Q ss_pred             CCceEEEEEecCCccEEEEEc-cCC--eEEEEEccCCeeecccccc-ccccccccCcccceeccccceEEEEEccCCCeE
Q 012721          267 TEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~-~dg--~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l  342 (457)
                      .......+|+|+| +.|+..+ .++  .|.++|+.+++..    ++ +..               ......+|+|||++|
T Consensus       305 ~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~dl~~g~~~----~Lt~~g---------------~~~~~~~~SpDG~~l  364 (448)
T PRK04792        305 RAIDTEPSWHPDG-KSLIFTSERGGKPQIYRVNLASGKVS----RLTFEG---------------EQNLGGSITPDGRSM  364 (448)
T ss_pred             CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----EEecCC---------------CCCcCeeECCCCCEE
Confidence            4456778999999 6665544 344  4566676665422    11 111               223456899999999


Q ss_pred             EEEe-c-C--cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-C--cEEEEecCC
Q 012721          343 LSRD-Y-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGV  415 (457)
Q Consensus       343 ~s~~-~-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g--~i~iw~~~~  415 (457)
                      +..+ . +  .|.++|+.. ++ ...+......                ....|+|||+.|+..+.+ +  .+++++.. 
T Consensus       365 ~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~~d----------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-  425 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLET-GA-MQVLTSTRLD----------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-  425 (448)
T ss_pred             EEEEecCCceEEEEEECCC-CC-eEEccCCCCC----------------CCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence            8653 2 4  455566653 33 3333222111                246899999988776543 3  37777764 


Q ss_pred             CCceeeEEecCCCcceeeeeccC
Q 012721          416 GSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       416 ~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                      | .....+..+.+.+..++|+|-
T Consensus       426 G-~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        426 G-RFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             C-CceEECcCCCCCcCCCccCCC
Confidence            4 345556666677788888874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=5.1e-12  Score=120.00  Aligned_cols=182  Identities=12%  Similarity=0.039  Sum_probs=121.1

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEe----CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEE-EEEccC
Q 012721          215 HAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSR  289 (457)
Q Consensus       215 ~~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~d  289 (457)
                      ..|...+.+.+|+|||+.|+..    .+..|++||+. .+....        +..+.+.+...+|+|+| +.| ++.+.+
T Consensus       198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~-~g~~~~--------l~~~~g~~~~~~~SPDG-~~la~~~~~~  267 (435)
T PRK05137        198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE-TGQREL--------VGNFPGMTFAPRFSPDG-RKVVMSLSQG  267 (435)
T ss_pred             ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC-CCcEEE--------eecCCCcccCcEECCCC-CEEEEEEecC
Confidence            3566689999999999988775    24689999998 444433        23344567788999999 655 455656


Q ss_pred             Ce--EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--C--cEEEEeccCCCCcee
Q 012721          290 GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVA  363 (457)
Q Consensus       290 g~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~--~i~~wd~~~~~~~~~  363 (457)
                      +.  |.+||+.+++..    ++.              .+........|+|||+.|+..++  +  .|+++|+.  +....
T Consensus       268 g~~~Iy~~d~~~~~~~----~Lt--------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~  327 (435)
T PRK05137        268 GNTDIYTMDLRSGTTT----RLT--------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPR  327 (435)
T ss_pred             CCceEEEEECCCCceE----Ecc--------------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeE
Confidence            55  777788776432    111              12234567899999999986653  3  57777875  33344


Q ss_pred             EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC---CcEEEEecCCCCceeeEEecCCCcceeeeeccCCc
Q 012721          364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  440 (457)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  440 (457)
                      .+..+....               ....|+|||++|+..+.+   ..|.+|++.++..  ..+. ....+..+.|+||+.
T Consensus       328 ~lt~~~~~~---------------~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt-~~~~~~~p~~spDG~  389 (435)
T PRK05137        328 RISFGGGRY---------------STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILT-SGFLVEGPTWAPNGR  389 (435)
T ss_pred             EeecCCCcc---------------cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--Eecc-CCCCCCCCeECCCCC
Confidence            443332221               368899999999877653   3688899866532  2222 223578899999998


Q ss_pred             ceec
Q 012721          441 ARRS  444 (457)
Q Consensus       441 ~~~~  444 (457)
                      ..+.
T Consensus       390 ~i~~  393 (435)
T PRK05137        390 VIMF  393 (435)
T ss_pred             EEEE
Confidence            7765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1e-12  Score=112.05  Aligned_cols=202  Identities=11%  Similarity=0.151  Sum_probs=136.7

Q ss_pred             CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      +..+..++|++.-..++++ .|-.|++||-..  .+...+      .......|+|++|-|.+...|++|+..| |.+|.
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss--t~pt~L------ks~sQrnvtclawRPlsaselavgCr~g-IciW~  168 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKL------KSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWS  168 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC--CCCcee------cchhhcceeEEEeccCCcceeeeeecce-eEEEE
Confidence            3467788999866667777 999999999773  222221      1223467999999999878899988776 78997


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cCcEEEEeccCCCCceeEe-eecccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATF-KIHEHLRP  373 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~~~~~~~~-~~~~~~~~  373 (457)
                      ...........+.+..+   ........+| .+|++|.|.+||..+++++  +..|.|||.++ +..+... .+..+.  
T Consensus       169 ~s~tln~~r~~~~~s~~---~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg~--  241 (445)
T KOG2139|consen  169 DSRTLNANRNIRMMSTH---HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGGF--  241 (445)
T ss_pred             cCccccccccccccccc---chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCce--
Confidence            65432222211222210   0011112344 6899999999999999886  38999999986 3333222 222222  


Q ss_pred             ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccccc
Q 012721          374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT  450 (457)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~  450 (457)
                                    .-+.||||+.+|+++.-|+..++|+.........-.-+ .+.|..-.|+|.|+..+...+..+
T Consensus       242 --------------slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp  303 (445)
T KOG2139|consen  242 --------------SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSP  303 (445)
T ss_pred             --------------eeEEEcCCCCEEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCc
Confidence                          46899999999999999999999976544222222222 348999999999999888655443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.7e-12  Score=115.81  Aligned_cols=286  Identities=15%  Similarity=0.187  Sum_probs=173.1

Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeee-ccccccccccCCCCCc
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT-LLAEKNFMNEHNPPSF  182 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  182 (457)
                      ..+..+++....+.|..  ++||+++++ |...-.|++||+.+-.+.....+  ..++..+.. +..-...+....    
T Consensus        43 eLiQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--Dae~V~feiLsDD~SK~v~L~~----  114 (703)
T KOG2321|consen   43 ELIQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHL--DAEVVDFEILSDDYSKSVFLQN----  114 (703)
T ss_pred             HHHHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecc--cccceeEEEeccchhhheEeec----
Confidence            34566677788899999  799998765 56788999999987544322211  111111000 000000111000    


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeC-CCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                                +..|.+...-.       ..+-..-...-..++++ |...+++.|....|+-++++ .+..+..      
T Consensus       115 ----------DR~IefHak~G-------~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLE-qGrfL~P------  170 (703)
T KOG2321|consen  115 ----------DRTIEFHAKYG-------RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE-QGRFLNP------  170 (703)
T ss_pred             ----------CceeeehhhcC-------eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcc-ccccccc------
Confidence                      11111110000       00000001122345664 45566666688889999999 7776654      


Q ss_pred             cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~  341 (457)
                       +.-..+.++++..++.. .+|++|+.+|.|.+||.+....+    ..+.. . ..............|+++.|+.+|-.
T Consensus       171 -~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv----~~l~~-~-~~v~s~pg~~~~~svTal~F~d~gL~  242 (703)
T KOG2321|consen  171 -FETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRV----GTLDA-A-SSVNSHPGGDAAPSVTALKFRDDGLH  242 (703)
T ss_pred             -cccccccceeeeecCcc-ceEEecccCceEEEecchhhhhh----eeeec-c-cccCCCccccccCcceEEEecCCcee
Confidence             34455789999999998 89999999999999999987544    22221 0 00000001111245999999999999


Q ss_pred             EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC--CcEEEEEeCCCcEEEEecCCCCc
Q 012721          342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGSA  418 (457)
Q Consensus       342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~iw~~~~~~~  418 (457)
                      +++|+. |.|.|||++. .+++.. ..|....+             +..+.|-+.  ...|++. +...++|||-.+| +
T Consensus       243 ~aVGts~G~v~iyDLRa-~~pl~~-kdh~~e~p-------------i~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G-k  305 (703)
T KOG2321|consen  243 VAVGTSTGSVLIYDLRA-SKPLLV-KDHGYELP-------------IKKLDWQDTDQQNKVVSM-DKRILKIWDECTG-K  305 (703)
T ss_pred             EEeeccCCcEEEEEccc-CCceee-cccCCccc-------------eeeecccccCCCceEEec-chHHhhhcccccC-C
Confidence            999976 9999999996 555543 34554432             247888664  3455544 4578999999999 5


Q ss_pred             eeeEEecCCCcceeeeeccCCcceeccccc
Q 012721          419 GGITVEAGKNENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       419 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~  448 (457)
                      ....++. ..+++.+++-|++-+...+.-+
T Consensus       306 ~~asiEp-t~~lND~C~~p~sGm~f~Ane~  334 (703)
T KOG2321|consen  306 PMASIEP-TSDLNDFCFVPGSGMFFTANES  334 (703)
T ss_pred             ceeeccc-cCCcCceeeecCCceEEEecCC
Confidence            5555554 4449999999988777765433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=2.3e-11  Score=115.58  Aligned_cols=210  Identities=15%  Similarity=0.163  Sum_probs=128.6

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCC---CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      ..+...+|  +++|++|+.++.+   ..|.+|++.+++....                                      
T Consensus       190 ~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--------------------------------------  229 (417)
T TIGR02800       190 EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKV--------------------------------------  229 (417)
T ss_pred             CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence            45788889  7999999887643   4799999887754332                                      


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CC--CeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                              ..+...+.+++|+||++.|+..  .+  ..|++||+. .+....        +..+
T Consensus       230 ------------------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~--------l~~~  276 (417)
T TIGR02800       230 ------------------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTR--------LTNG  276 (417)
T ss_pred             ------------------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC-CCCEEE--------CCCC
Confidence                                    1223345568899999877653  33  468889987 443332        2233


Q ss_pred             CCceEEEEEecCCccEEEEEcc-CC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      ........|+|+| +.|+..+. ++  .|.++|+.+++..    .+.              .+...+..+.|+|+|++|+
T Consensus       277 ~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~--------------~~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       277 PGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVR----RLT--------------FRGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             CCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----Eee--------------cCCCCccCeEECCCCCEEE
Confidence            3444567899999 76665543 33  5777777665321    111              1124567789999999998


Q ss_pred             EEec-C---cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC---cEEEEecCCC
Q 012721          344 SRDY-M---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVG  416 (457)
Q Consensus       344 s~~~-~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~iw~~~~~  416 (457)
                      .++. +   .|.+||+.. + ....+......                ....|+||+++|+..+.++   .+++.+.. +
T Consensus       338 ~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g  398 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLDG-G-GERVLTDTGLD----------------ESPSFAPNGRMILYATTRGGRGVLGLVSTD-G  398 (417)
T ss_pred             EEEccCCceEEEEEeCCC-C-CeEEccCCCCC----------------CCceECCCCCEEEEEEeCCCcEEEEEEECC-C
Confidence            7653 2   688888864 2 23333222111                3578999999988877654   35555543 3


Q ss_pred             CceeeEEecCCCcceeeee
Q 012721          417 SAGGITVEAGKNENRKPIL  435 (457)
Q Consensus       417 ~~~~~~~~~~~~~v~~~~~  435 (457)
                       .....+....+.+..+.|
T Consensus       399 -~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       399 -RFRARLPLGNGDVREPAW  416 (417)
T ss_pred             -ceeeECCCCCCCcCCCCC
Confidence             233444433444444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.49  E-value=3.3e-11  Score=110.36  Aligned_cols=282  Identities=11%  Similarity=0.107  Sum_probs=163.7

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (457)
Q Consensus        36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (457)
                      ..+.|+|||+++++++.||.|.++|+.+.+.                           +.+++.-             ..
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~---------------------------v~~i~~G-------------~~   79 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV---------------------------VATIKVG-------------GN   79 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSE---------------------------EEEEE-S-------------SE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccE---------------------------EEEEecC-------------CC
Confidence            4578999999999999999999999998774                           2333322             34


Q ss_pred             EEEEEEEecCCCCEEEEee-CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          116 INRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       116 V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      ..++++  +++|++++++. .++.+.++|.++.+....+......                                   
T Consensus        80 ~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~-----------------------------------  122 (369)
T PF02239_consen   80 PRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP-----------------------------------  122 (369)
T ss_dssp             EEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE------------------------------------
T ss_pred             cceEEE--cCCCCEEEEEecCCCceeEeccccccceeeccccccc-----------------------------------
Confidence            677888  79999988775 6899999999988776654322100                                   


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                                         .......+..+..+|....++..  +.+.|.+.|.... .....-      ..........
T Consensus       123 -------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-~~~~~~------~i~~g~~~~D  176 (369)
T PF02239_consen  123 -------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-KNLKVT------TIKVGRFPHD  176 (369)
T ss_dssp             -------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-SCEEEE------EEE--TTEEE
T ss_pred             -------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-ccccee------eecccccccc
Confidence                               01133467778778888766655  5688988887733 222211      1123345678


Q ss_pred             EEEecCCccEEEE-EccCCeEEEEEccCCeeeccccccccccccccCc-ccceeccc--cceEEEEEccCCCeEEEE-ec
Q 012721          273 AEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEII--ASISDIKFANDGQHLLSR-DY  347 (457)
Q Consensus       273 v~~~p~~~~~l~~-~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~--~~v~~~~~s~~g~~l~s~-~~  347 (457)
                      ..|+|++ ++++. ...++.|-++|.++++...    .++. ...+.. ...-..|.  ++++..  ...+.+.++. +.
T Consensus       177 ~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~----~i~~-g~~p~~~~~~~~php~~g~vw~~--~~~~~~~~~~ig~  248 (369)
T PF02239_consen  177 GGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVA----LIDT-GKKPHPGPGANFPHPGFGPVWAT--SGLGYFAIPLIGT  248 (369)
T ss_dssp             EEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEE----EEE--SSSBEETTEEEEEETTTEEEEEE--EBSSSSEEEEEE-
T ss_pred             cccCccc-ceeeecccccceeEEEeeccceEEE----Eeec-cccccccccccccCCCcceEEee--ccccceecccccC
Confidence            8999999 76554 5677899999999886541    1111 000000 00000111  122222  2233443332 22


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE----eCCCcEEEEecCCCCceeeEE
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG----SYSNLLRIFSHGVGSAGGITV  423 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~----~~dg~i~iw~~~~~~~~~~~~  423 (457)
                      ..+.+||... .+.+.++......                .-+..+|+++++...    ...++|.++|.++. +....+
T Consensus       249 ~~v~v~d~~~-wkvv~~I~~~G~g----------------lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl-~~~~~i  310 (369)
T PF02239_consen  249 DPVSVHDDYA-WKVVKTIPTQGGG----------------LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL-KVVKTI  310 (369)
T ss_dssp             -TTT-STTTB-TSEEEEEE-SSSS------------------EE--TT-SEEEEE-TT-SSHT-EEEEECCGT-EEEE-H
T ss_pred             Cccccchhhc-CeEEEEEECCCCc----------------ceeecCCCCccEEeeccCCCCCceEEEEECcCc-ceeEEE
Confidence            5666788875 7888888876554                258889999999987    45589999999988 444444


Q ss_pred             ec-CCCcceeeeeccCCcceeccc
Q 012721          424 EA-GKNENRKPILQAAPRARRSSL  446 (457)
Q Consensus       424 ~~-~~~~v~~~~~~p~~~~~~~~~  446 (457)
                      .. -...+..+.|+++|.....+.
T Consensus       311 ~~~~~~~~~h~ef~~dG~~v~vS~  334 (369)
T PF02239_consen  311 TPGPGKRVVHMEFNPDGKEVWVSV  334 (369)
T ss_dssp             HHHHT--EEEEEE-TTSSEEEEEE
T ss_pred             eccCCCcEeccEECCCCCEEEEEE
Confidence            32 234588999999998877643

...

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.49  E-value=8.2e-13  Score=110.79  Aligned_cols=191  Identities=9%  Similarity=0.036  Sum_probs=138.9

Q ss_pred             CCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721          217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw  295 (457)
                      -..+|+|.+|++|...+|.+ ....|.||... ..+.....    +++..|...|+.|+|+|.. +.|++++.|..-++|
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~-~~~~w~~~----htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw   82 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSML-GADLWEPA----HTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVW   82 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEec-CCCCceec----eehhhhCcceeEEeecCCC-CceeEccCCCCcccc
Confidence            34589999999999999999 99999999988 44433322    4578899999999999998 999999999999999


Q ss_pred             EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCce--e-Eeeecccc
Q 012721          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV--A-TFKIHEHL  371 (457)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~--~-~~~~~~~~  371 (457)
                      ....+..-.....              +.-++..++++.|+|.++.+|+|+. ..|.+|-++.+..-.  + .-+.+...
T Consensus        83 ~~~~~~~Wkptlv--------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt  148 (361)
T KOG1523|consen   83 TQPSGGTWKPTLV--------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST  148 (361)
T ss_pred             ccCCCCeecccee--------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence            9855432211111              2334678999999999999999987 888888876422211  0 11112222


Q ss_pred             ccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC-----CCC------------ceeeEEecCCCcceeee
Q 012721          372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG-----VGS------------AGGITVEAGKNENRKPI  434 (457)
Q Consensus       372 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~-----~~~------------~~~~~~~~~~~~v~~~~  434 (457)
                                     |++++|+|++-+|+.|+.|+..+|+..-     +..            .....+....+.+..+.
T Consensus       149 ---------------v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~  213 (361)
T KOG1523|consen  149 ---------------VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL  213 (361)
T ss_pred             ---------------eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE
Confidence                           2799999999999999999999998642     110            11112224567789999


Q ss_pred             eccCCcce
Q 012721          435 LQAAPRAR  442 (457)
Q Consensus       435 ~~p~~~~~  442 (457)
                      |+|+|...
T Consensus       214 fs~sG~~l  221 (361)
T KOG1523|consen  214 FSPSGNRL  221 (361)
T ss_pred             eCCCCCEe
Confidence            99887543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=8e-11  Score=112.06  Aligned_cols=213  Identities=16%  Similarity=0.156  Sum_probs=133.0

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCC---CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      ..+....|  +|+|+.|+..+.+   ..|.+|++.+++...+.                                     
T Consensus       199 ~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-------------------------------------  239 (430)
T PRK00178        199 EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-------------------------------------  239 (430)
T ss_pred             CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-------------------------------------
Confidence            56888999  7899998876643   36888888877554321                                     


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                               ...+.+...+|+|||+.|+..  .++  .|++||+. .+....        +..+
T Consensus       240 -------------------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~  285 (430)
T PRK00178        240 -------------------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLSR--------VTNH  285 (430)
T ss_pred             -------------------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC-CCCeEE--------cccC
Confidence                                     111234468899999988753  444  68888988 444333        2334


Q ss_pred             CCceEEEEEecCCccEEEEEc-cCC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~-~dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      ........|+|+| +.|+..+ .+|  .|.++|+.+++..    ++...              ........|+|+|++|+
T Consensus       286 ~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~~~----~lt~~--------------~~~~~~~~~Spdg~~i~  346 (430)
T PRK00178        286 PAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGRAE----RVTFV--------------GNYNARPRLSADGKTLV  346 (430)
T ss_pred             CCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----EeecC--------------CCCccceEECCCCCEEE
Confidence            4455677899999 6665554 344  5667777665422    11111              11234578999999998


Q ss_pred             EEec----CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC---CcEEEEecCCC
Q 012721          344 SRDY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG  416 (457)
Q Consensus       344 s~~~----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~iw~~~~~  416 (457)
                      ....    ..|.+||+.+ ++ ...+.. ....               ....|+|||+.|+..+.+   ..|+++++..+
T Consensus       347 ~~~~~~~~~~l~~~dl~t-g~-~~~lt~-~~~~---------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        347 MVHRQDGNFHVAAQDLQR-GS-VRILTD-TSLD---------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             EEEccCCceEEEEEECCC-CC-EEEccC-CCCC---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            6542    3578888864 33 233321 1111               257899999998876654   34677777533


Q ss_pred             CceeeEEecCCCcceeeeeccC
Q 012721          417 SAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       417 ~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                        ....+..+.+.+...+|+|-
T Consensus       409 --~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        409 --VRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             --ceEECcCCCCCcCCCccCCC
Confidence              33445555667788888874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=9.1e-10  Score=94.81  Aligned_cols=304  Identities=12%  Similarity=0.137  Sum_probs=183.8

Q ss_pred             hhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeC---CCeEEEEEecC--CccCCCcccchhhhhhcccccccC
Q 012721           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMDFTSTS   87 (457)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   87 (457)
                      .|++...-++........+.+.++=|+|+|++++|.++-.   +|.|.-|.++.  +...                    
T Consensus        20 v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--------------------   79 (346)
T COG2706          20 VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--------------------   79 (346)
T ss_pred             EEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--------------------
Confidence            3555533444445555667889999999999999988754   57788888875  3321                    


Q ss_pred             CCccceee--eeccCCccccccccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEEecc-cceeEEEeecCCCceee
Q 012721           88 HPEYRYKT--EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSS  163 (457)
Q Consensus        88 ~~~~~~~~--~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~  163 (457)
                           ++.  .+.+              .+-..+++  ++++++++++. .-|.|.++-++. |.+......-.+.    
T Consensus        80 -----~ln~~~~~g--------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~----  134 (346)
T COG2706          80 -----FLNRQTLPG--------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT----  134 (346)
T ss_pred             -----EeeccccCC--------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC----
Confidence                 111  1122              23367888  78999998886 458899998865 4433221110000    


Q ss_pred             eeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeE
Q 012721          164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRI  241 (457)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i  241 (457)
                             +.                                . ...     ......+.+..+.|++++|++.  .--.|
T Consensus       135 -------g~--------------------------------~-p~~-----rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri  169 (346)
T COG2706         135 -------GS--------------------------------G-PHE-----RQESPHVHSANFTPDGRYLVVPDLGTDRI  169 (346)
T ss_pred             -------CC--------------------------------C-CCc-----cccCCccceeeeCCCCCEEEEeecCCceE
Confidence                   00                                0 000     1112237788999999999987  56689


Q ss_pred             EEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEE-EccCCeEEEEEccCC--eee-cccccccccccccc
Q 012721          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQS--ALC-DHSARILRDAAESH  317 (457)
Q Consensus       242 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~~dg~i~lwd~~~~--~~~-~~~~~~~~~~~~~~  317 (457)
                      .+|++. .+.......   ..+ ........|.|+|++ ++..+ .-.+++|.+|.....  +.. .+.+..+..     
T Consensus       170 ~~y~~~-dg~L~~~~~---~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~-----  238 (346)
T COG2706         170 FLYDLD-DGKLTPADP---AEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE-----  238 (346)
T ss_pred             EEEEcc-cCccccccc---ccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc-----
Confidence            999998 444332211   112 233556889999999 66554 457999999998874  211 001111111     


Q ss_pred             CcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeecc--ccccccccccCCCCccccceEEEc
Q 012721          318 GSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVS  393 (457)
Q Consensus       318 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s  393 (457)
                          .|.+ ..+...+..+|||++|.++.-  ..|-+|.+...+..+.......  +..+              ..+.|+
T Consensus       239 ----dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P--------------R~F~i~  299 (346)
T COG2706         239 ----DFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP--------------RDFNIN  299 (346)
T ss_pred             ----ccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC--------------ccceeC
Confidence                0111 356788999999999998864  7899998875444343332211  1111              578999


Q ss_pred             CCCcEEEEEeCCC-cEEEEecCCCCceeeEEe--cCCCcceeeeec
Q 012721          394 GDGLHFATGSYSN-LLRIFSHGVGSAGGITVE--AGKNENRKPILQ  436 (457)
Q Consensus       394 ~d~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~--~~~~~v~~~~~~  436 (457)
                      +++++|+++..|+ .|.+|......-.+..+.  .......||.|.
T Consensus       300 ~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         300 PSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            9999999988754 688887653311222222  233344555554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.45  E-value=5e-13  Score=117.41  Aligned_cols=255  Identities=16%  Similarity=0.198  Sum_probs=177.6

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      -.-+.+.++.+|.+|+.|+..|.|..+|..++...                           .++..             
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---------------------------~Ei~v-------------  169 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---------------------------FEINV-------------  169 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceee---------------------------eeeeh-------------
Confidence            35578999999999999999999999999988752                           12221             


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                      ...|.++.|+  .+.++||++ ....+.+||-..-++..+                                        
T Consensus       170 ~Etv~Dv~~L--Hneq~~AVA-QK~y~yvYD~~GtElHCl----------------------------------------  206 (545)
T KOG1272|consen  170 METVRDVTFL--HNEQFFAVA-QKKYVYVYDNNGTELHCL----------------------------------------  206 (545)
T ss_pred             hhhhhhhhhh--cchHHHHhh-hhceEEEecCCCcEEeeh----------------------------------------
Confidence            2578999995  555565555 456789998665443322                                        


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                                            . ....|..+.|-|..-+|+++ ..|.++--|+. .++.+..       +....+.+.
T Consensus       207 ----------------------k-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~-------~~t~~G~~~  255 (545)
T KOG1272|consen  207 ----------------------K-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVS-TGKLVAS-------IRTGAGRTD  255 (545)
T ss_pred             ----------------------h-hcCchhhhcccchhheeeecccCCceEEEeec-hhhhhHH-------HHccCCccc
Confidence                                  1 12368889999999899998 99999999998 5665543       333457778


Q ss_pred             EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcE
Q 012721          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  350 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i  350 (457)
                      .++-+|-. ..+-+|...|+|.+|.....+.+.   +              +..|.++|.++++.++|+|+|+.+ |..+
T Consensus       256 vm~qNP~N-aVih~GhsnGtVSlWSP~skePLv---K--------------iLcH~g~V~siAv~~~G~YMaTtG~Dr~~  317 (545)
T KOG1272|consen  256 VMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLV---K--------------ILCHRGPVSSIAVDRGGRYMATTGLDRKV  317 (545)
T ss_pred             hhhcCCcc-ceEEEcCCCceEEecCCCCcchHH---H--------------HHhcCCCcceEEECCCCcEEeecccccce
Confidence            88889987 899999999999999988765331   1              244678999999999999999765 6999


Q ss_pred             EEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec-CCCC-ce--eeEEecC
Q 012721          351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH-GVGS-AG--GITVEAG  426 (457)
Q Consensus       351 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~-~~~~-~~--~~~~~~~  426 (457)
                      +|||+++ ...+.++......                ..+++|..|. || .+....|.||.- -.+. ..  ...-..-
T Consensus       318 kIWDlR~-~~ql~t~~tp~~a----------------~~ls~Sqkgl-LA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~  378 (545)
T KOG1272|consen  318 KIWDLRN-FYQLHTYRTPHPA----------------SNLSLSQKGL-LA-LSYGDHVQIWKDALKGSGHGETPYMNHRC  378 (545)
T ss_pred             eEeeecc-ccccceeecCCCc----------------cccccccccc-ee-eecCCeeeeehhhhcCCCCCCcchhhhcc
Confidence            9999997 3444444332111                3688886553 33 344456899953 2211 11  2222222


Q ss_pred             CCcceeeeeccC
Q 012721          427 KNENRKPILQAA  438 (457)
Q Consensus       427 ~~~v~~~~~~p~  438 (457)
                      .++|..+.|-|-
T Consensus       379 ~~~V~~l~FcP~  390 (545)
T KOG1272|consen  379 GGPVEDLRFCPY  390 (545)
T ss_pred             CcccccceeccH
Confidence            457777777664

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=4.8e-10  Score=101.40  Aligned_cols=308  Identities=10%  Similarity=0.105  Sum_probs=189.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      .......++|++|+++|.+.. ..++|++...+..                          .++.+.             
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~--------------------------~lt~~~-------------   73 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKV--------------------------VLCVEL-------------   73 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcE--------------------------EEEecc-------------
Confidence            345788999999999988764 5799999877642                          111111             


Q ss_pred             ccCcEEEEEEEecCCCCEEEEe-----eC-----CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721          112 IEEKINRVRWCAAPNGSMFILS-----TN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~-----s~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (457)
                        ..+.++.|  +|-+++|.+-     ..     .-.+++|++.++.....+......                   .-.
T Consensus        74 --~~~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~-------------------~W~  130 (566)
T KOG2315|consen   74 --KKTYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN-------------------GWV  130 (566)
T ss_pred             --ceeeeeee--cccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc-------------------Ccc
Confidence              23788888  7888888772     12     245779999885433222211111                   012


Q ss_pred             ceeccCCcc---ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEE------eCCCeEEEEEcCCCc
Q 012721          182 FAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVS------ADDLRINLWNLEISD  250 (457)
Q Consensus       182 ~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~------~~d~~i~iwd~~~~~  250 (457)
                      ..+..+..+   ...+.+.+++.....  ....   .-|...|+.+.++|.  ...+|+      |.-..|+||... ..
T Consensus       131 ~qfs~dEsl~arlv~nev~f~~~~~f~--~~~~---kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~-~~  204 (566)
T KOG2315|consen  131 PQFSIDESLAARLVSNEVQFYDLGSFK--TIQH---KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP-EE  204 (566)
T ss_pred             cccccchhhhhhhhcceEEEEecCCcc--ceee---eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc-cc
Confidence            223333332   234478888876521  1111   235678889999885  334444      145689999876 22


Q ss_pred             ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc--C---------CeEEEEEccCCeeeccccccccccccccCc
Q 012721          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--R---------GFVRLVDMRQSALCDHSARILRDAAESHGS  319 (457)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~--d---------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ...+.+..+  ++  ....-..+.|++-|..+|+..+.  |         .+++++++......   +....        
T Consensus       205 ~~~~~~a~k--sF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~---V~L~k--------  269 (566)
T KOG2315|consen  205 GQHQPVANK--SF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS---VPLLK--------  269 (566)
T ss_pred             cccchhhhc--cc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE---EecCC--------
Confidence            222211111  11  11223457788887455555442  2         35777777732211   11111        


Q ss_pred             ccceeccccceEEEEEccCCCeEEEE-e-c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721          320 KSFFTEIIASISDIKFANDGQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (457)
Q Consensus       320 ~~~~~~h~~~v~~~~~s~~g~~l~s~-~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~  396 (457)
                             .++|.+++|+|+|+-+++. + . -++.|||++  +.++..+...  ..               .++-|+|.|
T Consensus       270 -------~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~eg--pR---------------N~~~fnp~g  323 (566)
T KOG2315|consen  270 -------EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEG--PR---------------NTAFFNPHG  323 (566)
T ss_pred             -------CCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCCC--Cc---------------cceEECCCC
Confidence                   4789999999999887754 3 3 899999997  7777776433  22               479999999


Q ss_pred             cEEEEEeCC---CcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccccccccc
Q 012721          397 LHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY  454 (457)
Q Consensus       397 ~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~  454 (457)
                      ++|+.++.+   |.+-|||+.+. +.+..+.+  ...+-..|+|||.-.+.  ...++++|
T Consensus       324 ~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a--~~tt~~eW~PdGe~flT--ATTaPRlr  379 (566)
T KOG2315|consen  324 NIILLAGFGNLPGDMEVWDVPNR-KLIAKFKA--ANTTVFEWSPDGEYFLT--ATTAPRLR  379 (566)
T ss_pred             CEEEEeecCCCCCceEEEeccch-hhcccccc--CCceEEEEcCCCcEEEE--EeccccEE
Confidence            999988764   78999999985 55555543  44455689999998888  45554444

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.42  E-value=2e-10  Score=102.61  Aligned_cols=114  Identities=18%  Similarity=0.209  Sum_probs=80.5

Q ss_pred             CCCCceEEEEEecCCccEEEEE--ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~--~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l  342 (457)
                      ...++|...+|.|.+ +.+++.  -.+-.+.++|++.. +.    ..+.               ...=..+.|+|.++++
T Consensus       272 ~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~N-l~----~~~P---------------e~~rNT~~fsp~~r~i  330 (561)
T COG5354         272 DLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGN-LR----FYFP---------------EQKRNTIFFSPHERYI  330 (561)
T ss_pred             cccccceeeeecccC-CceeEEecccccceeecccccc-eE----EecC---------------CcccccccccCcccEE
Confidence            456889999999988 544443  47888999999885 11    1111               1344567899999999


Q ss_pred             EEEe-c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe------CCCcEEEEe
Q 012721          343 LSRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS------YSNLLRIFS  412 (457)
Q Consensus       343 ~s~~-~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~------~dg~i~iw~  412 (457)
                      +.++ +   |.|-+||.....+.+..+.+...                 .-+.|+||++++.+..      .|..|.||+
T Consensus       331 l~agF~nl~gni~i~~~~~rf~~~~~~~~~n~-----------------s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~  393 (561)
T COG5354         331 LFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT-----------------SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD  393 (561)
T ss_pred             EEecCCccccceEEeccCCceEEEEEeecCCc-----------------eEeeccCCceEEEecCCCcccccCcceEEEE
Confidence            8754 2   99999998642333435554443                 3578999999988764      388999999


Q ss_pred             cCCC
Q 012721          413 HGVG  416 (457)
Q Consensus       413 ~~~~  416 (457)
                      +...
T Consensus       394 v~g~  397 (561)
T COG5354         394 VYGA  397 (561)
T ss_pred             ecCc
Confidence            8754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.41  E-value=5.6e-10  Score=102.35  Aligned_cols=271  Identities=13%  Similarity=0.081  Sum_probs=155.5

Q ss_pred             CCEEE-EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEE
Q 012721           44 GDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  122 (457)
Q Consensus        44 ~~~la-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~  122 (457)
                      +++++ +-..++.|.|.|..+.+.                           +..+....            ..-..+.| 
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~---------------------------~~~i~~~~------------~~h~~~~~-   44 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKV---------------------------VARIPTGG------------APHAGLKF-   44 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SE---------------------------EEEEE-ST------------TEEEEEE--
T ss_pred             ccEEEEEecCCCEEEEEECCCCeE---------------------------EEEEcCCC------------CceeEEEe-
Confidence            34554 456689999999887663                           34444332            22234566 


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEecc
Q 012721          123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG  202 (457)
Q Consensus       123 ~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  202 (457)
                       ++||+++++++.|+.|.++|+.+++....+..                                               
T Consensus        45 -s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-----------------------------------------------   76 (369)
T PF02239_consen   45 -SPDGRYLYVANRDGTVSVIDLATGKVVATIKV-----------------------------------------------   76 (369)
T ss_dssp             -TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------------------------------------------------
T ss_pred             -cCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----------------------------------------------
Confidence             89999999999999999999999887655432                                               


Q ss_pred             CccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc
Q 012721          203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (457)
Q Consensus       203 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~  280 (457)
                                     ......+++++||++++++  ..+.+.++|.+ ..+.++.+.............+..+..+|..+
T Consensus        77 ---------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~  140 (369)
T PF02239_consen   77 ---------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRP  140 (369)
T ss_dssp             ---------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred             ---------------CCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCC
Confidence                           1235689999999999887  79999999998 56666655433221222445677888888883


Q ss_pred             cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCC
Q 012721          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMD  358 (457)
Q Consensus       281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~  358 (457)
                      .+++.--+.+.|.+.|....+...  .+.+..              ........|+|+++|++.+. . +.|-++|... 
T Consensus       141 ~fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-  203 (369)
T PF02239_consen  141 EFVVNLKDTGEIWVVDYSDPKNLK--VTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-  203 (369)
T ss_dssp             EEEEEETTTTEEEEEETTTSSCEE--EEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-
T ss_pred             EEEEEEccCCeEEEEEeccccccc--eeeecc--------------cccccccccCcccceeeecccccceeEEEeecc-
Confidence            455555666888888876642210  011111              23567889999999987764 3 8999999875 


Q ss_pred             CCceeEeee----ccccccccccccCCCCccccceEEEcC--CCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCccee
Q 012721          359 STPVATFKI----HEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  432 (457)
Q Consensus       359 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~  432 (457)
                      ++.+..+..    |......+   .  ...   ....|..  .+...++.-....+.+|+..+. +....+.....+ ..
T Consensus       204 ~k~v~~i~~g~~p~~~~~~~~---p--hp~---~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I~~~G~g-lF  273 (369)
T PF02239_consen  204 GKLVALIDTGKKPHPGPGANF---P--HPG---FGPVWATSGLGYFAIPLIGTDPVSVHDDYAW-KVVKTIPTQGGG-LF  273 (369)
T ss_dssp             TEEEEEEE-SSSBEETTEEEE---E--ETT---TEEEEEEEBSSSSEEEEEE--TTT-STTTBT-SEEEEEE-SSSS---
T ss_pred             ceEEEEeeccccccccccccc---c--CCC---cceEEeeccccceecccccCCccccchhhcC-eEEEEEECCCCc-ce
Confidence            555554432    11111000   0  000   1223322  2333333333345667898887 677888877777 88


Q ss_pred             eeeccCCcceecc
Q 012721          433 PILQAAPRARRSS  445 (457)
Q Consensus       433 ~~~~p~~~~~~~~  445 (457)
                      +..||+++-....
T Consensus       274 i~thP~s~~vwvd  286 (369)
T PF02239_consen  274 IKTHPDSRYVWVD  286 (369)
T ss_dssp             EE--TT-SEEEEE
T ss_pred             eecCCCCccEEee
Confidence            8889998877663

...

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.40  E-value=1.2e-11  Score=119.17  Aligned_cols=149  Identities=12%  Similarity=0.100  Sum_probs=122.1

Q ss_pred             EeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721          225 SNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  303 (457)
Q Consensus       225 ~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~  303 (457)
                      -++++.-++++| --+.|.+|+........        .+.+|.+.|.++.++.+| .++++.|+|.++|+|++.+.+..
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--------~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~  210 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPI--------RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL  210 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCcc--------eecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc
Confidence            346677788888 89999999988333333        268999999999999999 99999999999999999987533


Q ss_pred             ccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCC
Q 012721          304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND  382 (457)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (457)
                      .                ....+|...++.++|.|+  ++++++ |.+.++|+.+  +..+..+.+|...-          
T Consensus       211 ~----------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~----------  260 (967)
T KOG0974|consen  211 G----------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKG----------  260 (967)
T ss_pred             C----------------cccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhcc----------
Confidence            1                123678999999999998  777765 5999999875  67777888886542          


Q ss_pred             CccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          383 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       383 ~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                          +..++..++...++|++.|+.+++|++...
T Consensus       261 ----iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  261 ----IWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ----eeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence                268899999999999999999999998754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=3.6e-10  Score=106.40  Aligned_cols=178  Identities=17%  Similarity=0.124  Sum_probs=103.9

Q ss_pred             eeEEEeCCCCCEEEEe--CCC----eEEEEEcCCC--cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCe
Q 012721          221 INSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGF  291 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~--~d~----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~  291 (457)
                      ....+|+|||+.|+..  .+|    .+.+|++...  +...++       ..+........+|+||| +.|+..+ .+|.
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------t~~~~~~~~~p~wSPDG-~~Laf~s~~~g~  304 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------LNEAFGTQGNPSFSPDG-TRLVFVSNKDGR  304 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-------ecCCCCCcCCeEECCCC-CEEEEEECCCCC
Confidence            3457899999988864  223    3444666521  222222       11222334567999999 7666554 5676


Q ss_pred             EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c---CcEEEEeccCCCCceeEeee
Q 012721          292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKI  367 (457)
Q Consensus       292 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~---~~i~~wd~~~~~~~~~~~~~  367 (457)
                      ..+|.+...... ...+.+             ..+...+....|+|||+.|+... .   ..|.+||+.. ++. ..+..
T Consensus       305 ~~ly~~~~~~~g-~~~~~l-------------t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~  368 (428)
T PRK01029        305 PRIYIMQIDPEG-QSPRLL-------------TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTT  368 (428)
T ss_pred             ceEEEEECcccc-cceEEe-------------ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccC
Confidence            566644321000 000111             11224567889999999998643 2   4789999874 433 33332


Q ss_pred             ccccccccccccCCCCccccceEEEcCCCcEEEEEeC---CCcEEEEecCCCCceeeEEecCCCcceeeeeccCC
Q 012721          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  439 (457)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~  439 (457)
                      .....               ....|+|||++|+....   ...|++|++.+++ ... +....+.+...+|+|..
T Consensus       369 ~~~~~---------------~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~-~~~-Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        369 SPENK---------------ESPSWAIDSLHLVYSAGNSNESELYLISLITKK-TRK-IVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCc---------------cceEECCCCCEEEEEECCCCCceEEEEECCCCC-EEE-eecCCCcccCceecCCC
Confidence            22111               46899999998875443   3568899998773 333 33345667788888753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.40  E-value=1.5e-10  Score=110.13  Aligned_cols=181  Identities=15%  Similarity=0.092  Sum_probs=117.1

Q ss_pred             CCCCCeeEEEeCCCCCEEEEe-CC---CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE-EEccCC
Q 012721          216 AHDFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG  290 (457)
Q Consensus       216 ~h~~~v~~~~~~~~~~~l~~~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~dg  290 (457)
                      .+...+...+|+|||+.|+.+ .+   ..|++||+. .+....+        ..+...+.+++|+|+| +.|+ +.+.++
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~-~g~~~~~--------~~~~~~~~~~~~spDg-~~l~~~~~~~~  256 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLA-TGQREKV--------ASFPGMNGAPAFSPDG-SKLAVSLSKDG  256 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEe--------ecCCCCccceEECCCC-CEEEEEECCCC
Confidence            344567888999999999876 32   579999998 4433322        2234556678999999 6554 455544


Q ss_pred             --eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--C--cEEEEeccCCCCceeE
Q 012721          291 --FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVAT  364 (457)
Q Consensus       291 --~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~--~i~~wd~~~~~~~~~~  364 (457)
                        .|.+||+.+++..    .+..              +........|+|+|+.|+..++  +  .|+++|+.. ++ ...
T Consensus       257 ~~~i~~~d~~~~~~~----~l~~--------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~  316 (417)
T TIGR02800       257 NPDIYVMDLDGKQLT----RLTN--------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRR  316 (417)
T ss_pred             CccEEEEECCCCCEE----ECCC--------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence              5888888776422    1111              1223446789999998886543  3  577777753 33 333


Q ss_pred             eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC---cEEEEecCCCCceeeEEecCCCcceeeeeccCCcc
Q 012721          365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  441 (457)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  441 (457)
                      +..+....               ....|+|||++|+.++.++   .|.+||+.++. . ..+... .......|+|++..
T Consensus       317 l~~~~~~~---------------~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-~-~~l~~~-~~~~~p~~spdg~~  378 (417)
T TIGR02800       317 LTFRGGYN---------------ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-E-RVLTDT-GLDESPSFAPNGRM  378 (417)
T ss_pred             eecCCCCc---------------cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC-e-EEccCC-CCCCCceECCCCCE
Confidence            33232221               4789999999999888776   79999998863 2 222222 23456789999876


Q ss_pred             eec
Q 012721          442 RRS  444 (457)
Q Consensus       442 ~~~  444 (457)
                      ...
T Consensus       379 l~~  381 (417)
T TIGR02800       379 ILY  381 (417)
T ss_pred             EEE
Confidence            665

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.3e-10  Score=110.70  Aligned_cols=205  Identities=16%  Similarity=0.164  Sum_probs=124.4

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ..+.+.+.+.+|+|||+.||..+.+   ..|.+|++.+++..                         .+..+.       
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-------------------------~l~~~~-------  242 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-------------------------QITNFE-------  242 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-------------------------EccCCC-------
Confidence            3567789999999999998876533   36888898876531                         111122       


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEE-eeCCC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                              +.+....|  +|+|+.|+. .+.++  .|.+||+.++....+                              
T Consensus       243 --------g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------  282 (430)
T PRK00178        243 --------GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV------------------------------  282 (430)
T ss_pred             --------CCcCCeEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEc------------------------------
Confidence                    23445788  789988874 44444  577778877654332                              


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeec
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDM  258 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~  258 (457)
                                                      ..+........|+|||+.|+..  .++  .|+++|+. .++..++.  
T Consensus       283 --------------------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-~g~~~~lt--  327 (430)
T PRK00178        283 --------------------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-GGRAERVT--  327 (430)
T ss_pred             --------------------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEee--
Confidence                                            1222334567899999987664  333  57777876 34433321  


Q ss_pred             CCCcccCCCCceEEEEEecCCccEEEEEcc-CC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (457)
Q Consensus       259 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  335 (457)
                          ..+  .......|+|+| +.|+..+. ++  .|.+||+.+++..     .+..              ........|
T Consensus       328 ----~~~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~~-----~lt~--------------~~~~~~p~~  381 (430)
T PRK00178        328 ----FVG--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSVR-----ILTD--------------TSLDESPSV  381 (430)
T ss_pred             ----cCC--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCEE-----EccC--------------CCCCCCceE
Confidence                111  223456899999 77766654 33  5788898876432     1111              011224589


Q ss_pred             ccCCCeEEEEe-c---CcEEEEeccCCCCceeEeeec
Q 012721          336 ANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIH  368 (457)
Q Consensus       336 s~~g~~l~s~~-~---~~i~~wd~~~~~~~~~~~~~~  368 (457)
                      +|+|+.++..+ +   ..+.++++.  +.....+..+
T Consensus       382 spdg~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~~  416 (430)
T PRK00178        382 APNGTMLIYATRQQGRGVLMLVSIN--GRVRLPLPTA  416 (430)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECC--CCceEECcCC
Confidence            99999998654 2   346666664  4444444433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.38  E-value=4.9e-11  Score=101.27  Aligned_cols=204  Identities=10%  Similarity=0.175  Sum_probs=135.7

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      -..+++++++.++...|+.|-..|++.=+.+...-.                       ...+.+....|.         
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------km~~~r~~~~h~---------  114 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------KMTFLKDYLAHQ---------  114 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------hcchhhhhhhhh---------
Confidence            367899999999999999999999998887653221                       112344556677         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ..|..+-|  +...+.+++.+.|..+.---.+.+...--..                    .........+.....|
T Consensus       115 ---~~v~~~if--~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--------------------~~~~~t~~~~d~~~~f  169 (404)
T KOG1409|consen  115 ---ARVSAIVF--SLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--------------------FETPASALQFDALYAF  169 (404)
T ss_pred             ---cceeeEEe--cCCceeEEEeccccceEEEeeccCCcccceE--------------------eeccCCCCceeeEEEE
Confidence               88999999  5667789999999887433333332211110                    0000011111111122


Q ss_pred             cccc--ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          191 TENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       191 ~~~~--~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                      +.+.  .+....+... .-..+..+ .+|.+.+.+++|.|....+++| .|..+.+||+- ...-...      .+.+|.
T Consensus       170 vGd~~gqvt~lr~~~~-~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~------el~gh~  240 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQN-GCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAY------ELQGHN  240 (404)
T ss_pred             ecccccceEEEEEeec-CCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCcceee------eeccch
Confidence            1111  2222222211 11223333 8999999999999999999999 99999999997 4433332      368899


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCe
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  301 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~  301 (457)
                      ..|..+...+.- ..+.+++.||.|.+||++...
T Consensus       241 ~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  241 DKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence            999999988877 899999999999999998753

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=9.2e-11  Score=111.27  Aligned_cols=206  Identities=15%  Similarity=0.151  Sum_probs=122.0

Q ss_pred             ccCCceEEEEECCCCCEEEEEeC-CC--eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDR-GG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      .+...+.+..|||||+.|+..+. ++  .|.+||+.+++..                         .+..+.+       
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-------------------------~lt~~~g-------  262 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-------------------------KVTSFPG-------  262 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EecCCCC-------
Confidence            45667889999999999887643 33  5788888776531                         2222222       


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEE-eeCCCe--EEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFIL-STNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                              ......|  +|+|+.|+. .+.++.  |.+||+.+++...+                               
T Consensus       263 --------~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l-------------------------------  301 (448)
T PRK04792        263 --------INGAPRF--SPDGKKLALVLSKDGQPEIYVVDIATKALTRI-------------------------------  301 (448)
T ss_pred             --------CcCCeeE--CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC-------------------------------
Confidence                    2345788  789987775 455664  66667766654322                               


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecC
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMK  259 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~  259 (457)
                                                     ..+.......+|+||++.|+..  .++  .|+++|+. .++...+.   
T Consensus       302 -------------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt---  346 (448)
T PRK04792        302 -------------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRLT---  346 (448)
T ss_pred             -------------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEEe---
Confidence                                           1223345567899999988764  344  56666776 34433321   


Q ss_pred             CCcccCCCCceEEEEEecCCccEEEEEcc-CC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  336 (457)
                         ..+  ......+|+|+| ++|+..+. ++  .|.++|+.+++..     .+..              ........|+
T Consensus       347 ---~~g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~-----~lt~--------------~~~d~~ps~s  401 (448)
T PRK04792        347 ---FEG--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ-----VLTS--------------TRLDESPSVA  401 (448)
T ss_pred             ---cCC--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE-----EccC--------------CCCCCCceEC
Confidence               122  223456899999 77766554 44  4555777765422     1111              0011234799


Q ss_pred             cCCCeEEEEe-c-C--cEEEEeccCCCCceeEeeeccc
Q 012721          337 NDGQHLLSRD-Y-M--NLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       337 ~~g~~l~s~~-~-~--~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                      |+|+.|+... + +  .+++++.+  +.....+..+.+
T Consensus       402 pdG~~I~~~~~~~g~~~l~~~~~~--G~~~~~l~~~~g  437 (448)
T PRK04792        402 PNGTMVIYSTTYQGKQVLAAVSID--GRFKARLPAGQG  437 (448)
T ss_pred             CCCCEEEEEEecCCceEEEEEECC--CCceEECcCCCC
Confidence            9999988543 2 3  46677763  666666654433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.36  E-value=2e-11  Score=103.62  Aligned_cols=250  Identities=14%  Similarity=0.107  Sum_probs=148.3

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccc---eeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      +-|.+|.|  ...|.+|++|..+|.|-++.-....   ......++.+.                               
T Consensus        26 diis~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe-------------------------------   72 (433)
T KOG1354|consen   26 DIISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE-------------------------------   72 (433)
T ss_pred             cceeeEEe--ecccceEeecCCCCeEEEeecccccccceeeeeeeeccC-------------------------------
Confidence            56889999  7899999999999999998643321   11111111000                               


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC---EEEEeCCCeEEEEEcCCCccee--------------
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSADDLRINLWNLEISDQCF--------------  253 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~~~~d~~i~iwd~~~~~~~~--------------  253 (457)
                                    .....++.  ..-...|+.+.|.++++   +|+++.|.+|++|.+...+...              
T Consensus        73 --------------pEFDYLkS--leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~  136 (433)
T KOG1354|consen   73 --------------PEFDYLKS--LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTI  136 (433)
T ss_pred             --------------cccchhhh--hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCcc
Confidence                          00011111  12345688899987653   3444599999999887332211              


Q ss_pred             ---eeeecCCC-----------cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCc
Q 012721          254 ---NIVDMKPS-----------NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS  319 (457)
Q Consensus       254 ---~~~~~~~~-----------~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                         ++....+.           --.+|..-|.+++++.|+ ..++++ .|=.|.+|++.-....-   .+.+.   .|  
T Consensus       137 ~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sF---nIVDI---KP--  206 (433)
T KOG1354|consen  137 TSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSF---NIVDI---KP--  206 (433)
T ss_pred             ceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCce---eEEEc---cc--
Confidence               01000110           124688889999999998 777765 57789999987543211   11111   11  


Q ss_pred             ccceeccccceEEEEEccCCC-eEE-EEecCcEEEEeccCCCCc---eeEeeeccccccccccccCCCCccccceEEEcC
Q 012721          320 KSFFTEIIASISDIKFANDGQ-HLL-SRDYMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (457)
Q Consensus       320 ~~~~~~h~~~v~~~~~s~~g~-~l~-s~~~~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  394 (457)
                       ..+..-..-|++..|+|..- .++ +.+.|+|++.|++...-+   .+.+.....+.+   ..+-...+-.|..+.|++
T Consensus       207 -~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~---rsffseiIsSISDvKFs~  282 (433)
T KOG1354|consen  207 -ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS---RSFFSEIISSISDVKFSH  282 (433)
T ss_pred             -cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc---hhhHHHHhhhhhceEEcc
Confidence             11122345688999999643 333 445599999999842111   111222222211   111122233457899999


Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721          395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  427 (457)
Q Consensus       395 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  427 (457)
                      +|+||++-+. -+|++||++...++..+.+.|.
T Consensus       283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~  314 (433)
T KOG1354|consen  283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHE  314 (433)
T ss_pred             CCcEEEEecc-ceeEEEeccccCCcceEEeehH
Confidence            9999998776 6899999977667788888774

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.36  E-value=1.9e-10  Score=95.75  Aligned_cols=164  Identities=19%  Similarity=0.224  Sum_probs=109.9

Q ss_pred             cCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeE
Q 012721          215 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (457)
Q Consensus       215 ~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i  292 (457)
                      +.|.-+++.+.|+. +.+++++| +|+.+..||++.++..+-.      ..+-|...|.+|.-+|..+.+|++|+.|-.|
T Consensus       162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i  235 (339)
T KOG0280|consen  162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH------NSKVHTSGVVSIYSSPPKPTYIATGSYDECI  235 (339)
T ss_pred             cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee------cceeeecceEEEecCCCCCceEEEeccccce
Confidence            67888999999975 45678888 9999999999955543321      2356888899999888776899999999999


Q ss_pred             EEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC--CeEEEEecCcEEEEeccCC-CC---ceeEee
Q 012721          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMD-ST---PVATFK  366 (457)
Q Consensus       293 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~~~i~~wd~~~~-~~---~~~~~~  366 (457)
                      ++||.|+...     .+++.            .-.+.|+.+.++|.-  +.|+++-.+-.+|-+.... .+   .....+
T Consensus       236 ~~~DtRnm~k-----Pl~~~------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~  298 (339)
T KOG0280|consen  236 RVLDTRNMGK-----PLFKA------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK  298 (339)
T ss_pred             eeeehhcccC-----ccccC------------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc
Confidence            9999996532     12222            113789999999964  3445554466667666431 12   223334


Q ss_pred             eccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEE-EEecCCC
Q 012721          367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLR-IFSHGVG  416 (457)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~-iw~~~~~  416 (457)
                      .|....               +...|.....+|||++ .|+.++ +|-.-++
T Consensus       299 ~hdSl~---------------YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  299 IHDSLC---------------YGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ccccee---------------eccccccccceeeeeeccccceeeeeeeccC
Confidence            444332               3445533345677755 477755 7876665

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=6.9e-10  Score=100.22  Aligned_cols=320  Identities=13%  Similarity=0.147  Sum_probs=171.2

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (457)
Q Consensus        36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (457)
                      +-+.|||-|.||+|--..| |.+|--.+-..                           +..| .|             ..
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r---------------------------~~RF-~H-------------p~  251 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDR---------------------------IQRF-YH-------------PG  251 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHH---------------------------HHhc-cC-------------CC
Confidence            5689999999999998887 88996443221                           1111 22             35


Q ss_pred             EEEEEEEecCCCCEEEEeeC-----------CCeEEEEEecccceeEEEeecCCC--ceeeeeeccccccccccCCC---
Q 012721          116 INRVRWCAAPNGSMFILSTN-----------DKTIKLWKVRDQKVKKIKEMDHFP--FVSSENTLLAEKNFMNEHNP---  179 (457)
Q Consensus       116 V~~v~~~~s~~~~~l~s~s~-----------d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---  179 (457)
                      |.-+.|  ||+.++|++-+.           ...+.|||+.+|...........+  .-.-..|+..+....+...+   
T Consensus       252 Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sis  329 (698)
T KOG2314|consen  252 VQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSIS  329 (698)
T ss_pred             ceeeec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEE
Confidence            888999  789999999542           267999999999877655431111  00112222222111111110   


Q ss_pred             ------------CCcee--ccCCcccccc-ceEEEeccCccc-----------cccceeeccCCCCCeeEEEeCCCCCEE
Q 012721          180 ------------PSFAH--GYHLEWTENM-ATKIANVGNSVH-----------ARCQKVYPHAHDFNINSISNNSDCETF  233 (457)
Q Consensus       180 ------------~~~~~--~~~~~~~~~~-~i~~~~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~l  233 (457)
                                  .+..+  +.+-+|.+.+ .+..|..++...           .+.+++. .-+.-.=..+.|-.+|.+|
T Consensus       330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyL  408 (698)
T KOG2314|consen  330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYL  408 (698)
T ss_pred             EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEE
Confidence                        00110  1122233333 344554443221           1111111 1111111235566678887


Q ss_pred             EEe-C-------C---CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc---cCCeEEEEEccC
Q 012721          234 VSA-D-------D---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQ  299 (457)
Q Consensus       234 ~~~-~-------d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~lwd~~~  299 (457)
                      +.- +       .   ..+-|+.++.....+..+        ...+.|...+|-|.| +.+++-+   ...++.+|-+.+
T Consensus       409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             EEEEEeeccccccceEeeEEEEEeeccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeec
Confidence            762 1       1   124455555333333332        234789999999999 5554433   246788998875


Q ss_pred             CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---c-CcEEEEeccCCCCceeEeeecccccccc
Q 012721          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKL  375 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~  375 (457)
                      .......++.++.               ...+.+.|+|.|++++.+.   . |.+.++|+....-.......|...    
T Consensus       480 ~~~~~~lVk~~dk---------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~a----  540 (698)
T KOG2314|consen  480 NIKKPSLVKELDK---------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAA----  540 (698)
T ss_pred             CCCchhhhhhhcc---------------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccccc----
Confidence            3211112222222               4578899999999998753   3 899999986311111112223332    


Q ss_pred             ccccCCCCccccceEEEcCCCcEEEEEeCC------CcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          376 CDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                                  +.+.|.|.|+|+++++.-      .--+||+++-.  .+  -+...+......|-|.-|..++
T Consensus       541 ------------t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr--ll--~~~~i~~f~qF~WRPRPps~LS  599 (698)
T KOG2314|consen  541 ------------TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR--LL--KEDIIDRFKQFLWRPRPPSLLS  599 (698)
T ss_pred             ------------ccceECCCCCEEEEeeehhhhccccceEEEEeecH--HH--HHHHHHHHHhhccCCCCCcccC
Confidence                        579999999999998863      33445554422  10  0111233444556666555544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.35  E-value=2.7e-08  Score=91.48  Aligned_cols=205  Identities=14%  Similarity=0.114  Sum_probs=120.3

Q ss_pred             CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecC------CCcccCCCCceEEEEEecCCccEEEEEc-cCC
Q 012721          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG  290 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg  290 (457)
                      .-..++++|++++|+++  .++.|.++++...+.........      +.....-.....++.++|++ +++++.. ...
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D  166 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGAD  166 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTT
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCC
Confidence            44578999999999988  69999999998544443321110      00001123557899999999 6665554 556


Q ss_pred             eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeec
Q 012721          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH  368 (457)
Q Consensus       291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~  368 (457)
                      .|.+|++............+..            .....-..+.|+|+++++....+  +.|.++++......+.....-
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~  234 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI  234 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEEeCCCceEEEeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence            8999999775411000011111            11356788999999999987764  999999997322222221111


Q ss_pred             cccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecC--CCCcee--eEEecCCCcceeeeeccCCccee
Q 012721          369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG--VGSAGG--ITVEAGKNENRKPILQAAPRARR  443 (457)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~--~~~~~~--~~~~~~~~~v~~~~~~p~~~~~~  443 (457)
                      ....    .-+...  .....+.++|||++|+++.. +++|.+|++.  ++ ...  ..........+.+.++|++....
T Consensus       235 ~~~~----~~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-~l~~~~~~~~~G~~Pr~~~~s~~g~~l~  307 (345)
T PF10282_consen  235 STLP----EGFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-TLTLVQTVPTGGKFPRHFAFSPDGRYLY  307 (345)
T ss_dssp             ESCE----TTSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-TEEEEEEEEESSSSEEEEEE-TTSSEEE
T ss_pred             eecc----cccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-ceEEEEEEeCCCCCccEEEEeCCCCEEE
Confidence            1000    000000  01147899999999887664 6789999994  23 222  22222334478999999998777


Q ss_pred             c
Q 012721          444 S  444 (457)
Q Consensus       444 ~  444 (457)
                      .
T Consensus       308 V  308 (345)
T PF10282_consen  308 V  308 (345)
T ss_dssp             E
T ss_pred             E
Confidence            6

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=5.1e-10  Score=104.05  Aligned_cols=269  Identities=14%  Similarity=0.189  Sum_probs=173.8

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .......|++|+....|+|.|+.||.+++..+.+......    ...+...        .....-.++.||.        
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~----~~glaa~--------snLsmNQtLeGH~--------   71 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLN----KSGLAAA--------SNLSMNQTLEGHN--------   71 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccc----ccccccc--------cccchhhhhccCc--------
Confidence            3567889999999999999999999999999876543100    0000000        0112334688998        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          +.|.-+.|  +.+.+.|-++..+|.|.+|-+-.|.......                                   
T Consensus        72 ----~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMi-----------------------------------  110 (1189)
T KOG2041|consen   72 ----ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEMI-----------------------------------  110 (1189)
T ss_pred             ----ceEEEEEe--ccccccccccCCCceEEEEeeecccHHHHHh-----------------------------------
Confidence                89999999  6777788889999999999988775422110                                   


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                              ......-|.+++|+.||..++.. .||.|.+=.++ +.+....      .+++.  
T Consensus       111 ------------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgK------eLkg~--  157 (1189)
T KOG2041|consen  111 ------------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGK------ELKGQ--  157 (1189)
T ss_pred             ------------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecch------hcchh--
Confidence                                    03345568899999999999999 99999888777 3333211      12221  


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeee-------cc------------------------------------
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-------DH------------------------------------  305 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~-------~~------------------------------------  305 (457)
                      ....+.|++|. ..++.+-..|.+++||.+..-..       ..                                    
T Consensus       158 ~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy  236 (1189)
T KOG2041|consen  158 LLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY  236 (1189)
T ss_pred             eccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence            23467788887 77888888888999887643100       00                                    


Q ss_pred             ---ccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---------c-CcEEEEeccCCCCceeEeeeccccc
Q 012721          306 ---SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---------Y-MNLKLWDIRMDSTPVATFKIHEHLR  372 (457)
Q Consensus       306 ---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---------~-~~i~~wd~~~~~~~~~~~~~~~~~~  372 (457)
                         ..+++.. ..++.+  .+..-.-.+....|+++|..||.++         | +.|.+|..-  ++.+..++.....+
T Consensus       237 ~nGr~QiMR~-eND~~P--vv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~--G~i~gtlkvpg~~I  311 (1189)
T KOG2041|consen  237 ANGRMQIMRS-ENDPEP--VVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY--GHIVGTLKVPGSCI  311 (1189)
T ss_pred             cCceehhhhh-cCCCCC--eEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc--hhheEEEecCCcee
Confidence               0000000 000000  0111124577899999999999642         2 467777653  77788887776654


Q ss_pred             cccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                                     +.++|-..|-.+|.+- |+.|++=+++
T Consensus       312 ---------------t~lsWEg~gLriA~Av-dsfiyfanIR  337 (1189)
T KOG2041|consen  312 ---------------TGLSWEGTGLRIAIAV-DSFIYFANIR  337 (1189)
T ss_pred             ---------------eeeEEcCCceEEEEEe-cceEEEEeec
Confidence                           6788877776666543 4555554444

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.3e-08  Score=87.88  Aligned_cols=244  Identities=11%  Similarity=0.112  Sum_probs=154.4

Q ss_pred             CcEEEEEEEecCCCCEEEEeeC---CCeEEEEEecc--cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~---d~~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                      +.++-|+|  +++.++|.++-.   +|.|..|.++.  |++...-....                               
T Consensus        40 ~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-------------------------------   86 (346)
T COG2706          40 GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-------------------------------   86 (346)
T ss_pred             CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-------------------------------
Confidence            66888999  788888888753   57788887765  44433221100                               


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                .+  .+-..+++++++++++++  .-|.|.++-++..+.....+.     ...|
T Consensus        87 --------------------------~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-----~~~h  133 (346)
T COG2706          87 --------------------------PG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-----VVKH  133 (346)
T ss_pred             --------------------------CC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-----eeec
Confidence                                      11  223678999999999998  789999999975555443322     1223


Q ss_pred             CCc----------eEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721          267 TEV----------ITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (457)
Q Consensus       267 ~~~----------i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  335 (457)
                      .+.          +....+.|++ ++|++.+ .-..|.+|++..+++.......++.              ...-..|.|
T Consensus       134 ~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~--------------G~GPRHi~F  198 (346)
T COG2706         134 TGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP--------------GAGPRHIVF  198 (346)
T ss_pred             CCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCC--------------CCCcceEEE
Confidence            333          7888999999 8888876 3356999999977654322222211              356788999


Q ss_pred             ccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEe
Q 012721          336 ANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFS  412 (457)
Q Consensus       336 s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~  412 (457)
                      +|++++...-++  ++|.+|..+.....+..++.+...-    .-|..+..  .-.+.+++||++|.+... ...|.+|.
T Consensus       199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP----~dF~g~~~--~aaIhis~dGrFLYasNRg~dsI~~f~  272 (346)
T COG2706         199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP----EDFTGTNW--AAAIHISPDGRFLYASNRGHDSIAVFS  272 (346)
T ss_pred             cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc----cccCCCCc--eeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            999999988765  9999999975434444444333221    01111111  147889999999987764 34788888


Q ss_pred             cCCCCceeeEEe---cCCCcceeeeeccCCcceec
Q 012721          413 HGVGSAGGITVE---AGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       413 ~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +......+....   .+....+...++|++.....
T Consensus       273 V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia  307 (346)
T COG2706         273 VDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA  307 (346)
T ss_pred             EcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence            765422222222   22222566666676655443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.31  E-value=1.6e-09  Score=98.74  Aligned_cols=194  Identities=18%  Similarity=0.289  Sum_probs=142.8

Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEE
Q 012721           41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  120 (457)
Q Consensus        41 s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~  120 (457)
                      .|...|+|....||.++||+...++..                     .++.+...+.+.               ..+..
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~---------------------~e~~p~~~~s~t---------------~~~~~   45 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQ---------------------QEFAPIASLSGT---------------CTYTK   45 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceee---------------------eeeccchhccCc---------------ceeEE
Confidence            355689999999999999999877642                     122333333322               22222


Q ss_pred             EEe------------------cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          121 WCA------------------APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       121 ~~~------------------s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                      |.-                  +.+-..++-|...|.|.+|++..++....+..                           
T Consensus        46 w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st---------------------------   98 (541)
T KOG4547|consen   46 WGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLST---------------------------   98 (541)
T ss_pred             EEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEec---------------------------
Confidence            210                  12333566678889999999888877654331                           


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                                                      ..|.+.|+++.++.+-..|.++ .|+.+..|+.. ..+.++.      
T Consensus        99 --------------------------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~------  139 (541)
T KOG4547|consen   99 --------------------------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI------  139 (541)
T ss_pred             --------------------------------CCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee------
Confidence                                            5789999999999988899998 99999999998 6777766      


Q ss_pred             cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC---
Q 012721          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---  338 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---  338 (457)
                       +......+.+++.+||+ ..+++++  +.|++||+.+++..    ..             |++|.++|.++.|--+   
T Consensus       140 -~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~kevv----~~-------------ftgh~s~v~t~~f~~~~~g  198 (541)
T KOG4547|consen  140 -WKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKEVV----IT-------------FTGHGSPVRTLSFTTLIDG  198 (541)
T ss_pred             -eccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCceEE----EE-------------ecCCCcceEEEEEEEeccc
Confidence             45566778999999998 8888775  58999999998644    22             5678899999999877   


Q ss_pred             --CCeEEEEec--CcEEEEeccC
Q 012721          339 --GQHLLSRDY--MNLKLWDIRM  357 (457)
Q Consensus       339 --g~~l~s~~~--~~i~~wd~~~  357 (457)
                        |.++.++..  ..+.+|-.+.
T Consensus       199 ~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  199 IIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cccceeeeccccccceeEEEEEc
Confidence              788887653  6677787653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=2.3e-09  Score=100.99  Aligned_cols=111  Identities=14%  Similarity=0.133  Sum_probs=69.8

Q ss_pred             eeEEEeCCCCCEEEEe--CCCeEEEE--EcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---CeEE
Q 012721          221 INSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVR  293 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~  293 (457)
                      ....+|+|||+.|+..  .++...+|  ++...+.....       +..+...+....|+|+| +.|+..+.+   ..|.
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~  354 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQIC  354 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEEE
Confidence            4567999999987764  56655555  44311221221       23333456788999999 777765533   4689


Q ss_pred             EEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE-Eec---CcEEEEeccC
Q 012721          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY---MNLKLWDIRM  357 (457)
Q Consensus       294 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~---~~i~~wd~~~  357 (457)
                      +||+.+++..    .+...              ...+....|+|||++|+. +..   ..|+++|+..
T Consensus       355 v~dl~~g~~~----~Lt~~--------------~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        355 VYDLATGRDY----QLTTS--------------PENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             EEECCCCCeE----EccCC--------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            9999887532    11111              124567899999998874 322   6788888863

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.29  E-value=1.2e-09  Score=91.15  Aligned_cols=158  Identities=11%  Similarity=0.023  Sum_probs=113.6

Q ss_pred             eeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721          221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~  299 (457)
                      ..++.|++.+..++++ .+|.+.+-+.. .....+.     +.++.|...++...|+...++++.+|+.|+.+..||+|.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~  197 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI  197 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecc-eeeeeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence            4578889888889999 99999855543 2222221     347889999999999988888999999999999999994


Q ss_pred             CeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEec-CcEEEEeccCCCCceeEeeecccccccccc
Q 012721          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  377 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  377 (457)
                      .+.     .++..          ...|...|.++.-+| .+.+|++|+. ..|++||.++-++++..-....+       
T Consensus       198 p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GG-------  255 (339)
T KOG0280|consen  198 PKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGG-------  255 (339)
T ss_pred             Ccc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccc-------
Confidence            321     34442          245678899998886 5789999996 99999999966788766543322       


Q ss_pred             ccCCCCccccceEEEcCC--CcEEEEEeCCCcEEEEecCCC
Q 012721          378 LYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       378 ~~~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~iw~~~~~  416 (457)
                               |..+.++|.  +..|+++-.+| .+|-+++.+
T Consensus       256 ---------VWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~  286 (339)
T KOG0280|consen  256 ---------VWRIKHHPEIFHRLLAACMHNG-AKILDSSDK  286 (339)
T ss_pred             ---------eEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence                     268888885  33344444433 566666554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=3.4e-11  Score=122.04  Aligned_cols=217  Identities=19%  Similarity=0.300  Sum_probs=154.3

Q ss_pred             ccchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCC
Q 012721           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (457)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (457)
                      ..++|-....-.+........+-..|.++.=+|...+.+||+.||.|++|....++..                      
T Consensus      2186 ~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v---------------------- 2243 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV---------------------- 2243 (2439)
T ss_pred             ccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE----------------------
Confidence            3445554422222223333446678999999999999999999999999998776632                      


Q ss_pred             ccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccc
Q 012721           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (457)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (457)
                           ..++.-.          . ..|+.+.|  +..|+.+..+..||.+.+|.+...-..   .               
T Consensus      2244 -----~~~rt~g----------~-s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk~~~---s--------------- 2287 (2439)
T KOG1064|consen 2244 -----VCFRTAG----------N-SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPKPYT---S--------------- 2287 (2439)
T ss_pred             -----EEeeccC----------c-chhhhhhh--cccCCceeeeccCCceeecccCCccee---c---------------
Confidence                 2222221          1 67899999  688999999999999999998732111   0               


Q ss_pred             cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe----CCCeEEEEE
Q 012721          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWN  245 (457)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd  245 (457)
                                                                  -+.|......+.|-.  ..++++    +++.+.+||
T Consensus      2288 --------------------------------------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2288 --------------------------------------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred             --------------------------------------------cccCCccccceeeee--hhhhccccCCCCCcccchh
Confidence                                                        056777788888864  455552    678999999


Q ss_pred             cCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec
Q 012721          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (457)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (457)
                      ........-+       -..|.+.++++++.|.. ++|++|+.+|.|.+||++..++.    ..+.              
T Consensus      2322 tl~~~~~s~v-------~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~-------------- 2375 (2439)
T KOG1064|consen 2322 TLLPPMNSLV-------HTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQ-------------- 2375 (2439)
T ss_pred             cccCccccee-------eeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhh--------------
Confidence            7744333222       25799999999999999 99999999999999999986543    1111              


Q ss_pred             cccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEee
Q 012721          326 IIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  366 (457)
Q Consensus       326 h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~  366 (457)
                          .    +. ...++++|+. |.++||++.. -..+..+.
T Consensus      2376 ----~----~~-~~~~f~~~ss~g~ikIw~~s~-~~ll~~~p 2407 (2439)
T KOG1064|consen 2376 ----A----LD-TREYFVTGSSEGNIKIWRLSE-FGLLHTFP 2407 (2439)
T ss_pred             ----h----hh-hhheeeccCcccceEEEEccc-cchhhcCc
Confidence                1    33 4678888876 9999999975 45555544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=4.6e-11  Score=105.93  Aligned_cols=271  Identities=12%  Similarity=0.116  Sum_probs=177.8

Q ss_pred             ccccCCceEEEEECC--CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           28 ELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~--~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      .-.|...|....|-|  +..-+++++.||.+++=.+......                        +-...+..|.    
T Consensus       181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~------------------------e~t~rl~~h~----  232 (559)
T KOG1334|consen  181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV------------------------ENTKRLAPHE----  232 (559)
T ss_pred             ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce------------------------ecceeccccc----
Confidence            345888888888888  3467899999999998765432210                        1123455566    


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                              ++|..++..| .+...|.+++.|+.+.-.|+..+.........                             
T Consensus       233 --------g~vhklav~p-~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr-----------------------------  274 (559)
T KOG1334|consen  233 --------GPVHKLAVEP-DSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR-----------------------------  274 (559)
T ss_pred             --------CccceeeecC-CCCCcccccccccceeeeeeccCCccceeeee-----------------------------
Confidence                    8899999864 33457999999999999998876544332211                             


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCC---CCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcce-----eee
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHD---FNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQC-----FNI  255 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~-----~~~  255 (457)
                                                   ..+.   -..+.++.+|.. ..++++ .|..+++||.+.-.+.     +..
T Consensus       275 -----------------------------~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~  325 (559)
T KOG1334|consen  275 -----------------------------EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDK  325 (559)
T ss_pred             -----------------------------ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhh
Confidence                                         1111   245678888854 477888 9999999998732111     111


Q ss_pred             eecCCCcc-cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc--ceEE
Q 012721          256 VDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISD  332 (457)
Q Consensus       256 ~~~~~~~~-~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~  332 (457)
                      +  -|..+ ....-.|++++|+.++ .-|+++..|-.|+++.-..+. -.   .........+..+..+.+|..  .|-.
T Consensus       326 f--~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~-G~---~p~~~s~~~~~~k~vYKGHrN~~TVKg  398 (559)
T KOG1334|consen  326 F--CPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGD-GS---EPDPSSPREQYVKRVYKGHRNSRTVKG  398 (559)
T ss_pred             c--CCccccccCcccceeEEecCCc-cceeeeecccceEEecccccc-CC---CCCCCcchhhccchhhcccccccccce
Confidence            1  11111 1233569999999888 555556677778998433221 10   000000011222334566653  3666


Q ss_pred             EEE-ccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721          333 IKF-ANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  410 (457)
Q Consensus       333 ~~~-s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i  410 (457)
                      +-| -|...|+++|+| |.|.||+-.+ ++.+.-+.+....+               .++.=+|--..||+.+-|.-|+|
T Consensus       399 VNFfGPrsEyVvSGSDCGhIFiW~K~t-~eii~~MegDr~VV---------------NCLEpHP~~PvLAsSGid~DVKI  462 (559)
T KOG1334|consen  399 VNFFGPRSEYVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVV---------------NCLEPHPHLPVLASSGIDHDVKI  462 (559)
T ss_pred             eeeccCccceEEecCccceEEEEecch-hHHHHHhhcccceE---------------eccCCCCCCchhhccCCccceee
Confidence            655 588899999999 9999999875 77777777766654               47777888899999999999999


Q ss_pred             EecCCC
Q 012721          411 FSHGVG  416 (457)
Q Consensus       411 w~~~~~  416 (457)
                      |--.+.
T Consensus       463 WTP~~~  468 (559)
T KOG1334|consen  463 WTPLTA  468 (559)
T ss_pred             ecCCcc
Confidence            997554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.1e-09  Score=99.14  Aligned_cols=243  Identities=10%  Similarity=0.093  Sum_probs=146.9

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (457)
Q Consensus        36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (457)
                      ++..|+.|..+.|-- ..+.+.+|+...-+..                          ..  +-|.            ..
T Consensus       129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~--------------------------~~--kl~~------------~~  167 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTI--------------------------QH--KLSV------------SG  167 (566)
T ss_pred             cccccccchhhhhhh-hcceEEEEecCCccce--------------------------ee--eeec------------cc
Confidence            688999887654432 3457999998764321                          11  1122            66


Q ss_pred             EEEEEEEecCCCCEEEE-----eeCCCeEEEEEecccceeEEEeec--CCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          116 INRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMD--HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       116 V~~v~~~~s~~~~~l~s-----~s~d~~i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                      |+.+.++|.+....+++     .+.=..+++|....+.........  ...+-....|.....         ..-++...
T Consensus       168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt---------~LLvLast  238 (566)
T KOG2315|consen  168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT---------ALLVLAST  238 (566)
T ss_pred             eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCc---------eEEEEEEE
Confidence            88999976655666666     345578999987633222211110  001111122222111         12222222


Q ss_pred             ccccc-------cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE--e-CCCeEEEEEcCCCcceeeeeec
Q 012721          189 EWTEN-------MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDM  258 (457)
Q Consensus       189 ~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~  258 (457)
                      ..+..       ..+.+.+++.    ....+- -...++|.++.|+|+++.+++  | +-..+.|||++  +..+..+  
T Consensus       239 dVDktn~SYYGEq~Lyll~t~g----~s~~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df--  309 (566)
T KOG2315|consen  239 DVDKTNASYYGEQTLYLLATQG----ESVSVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF--  309 (566)
T ss_pred             eecCCCccccccceEEEEEecC----ceEEEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC--
Confidence            22221       1455555541    111111 245789999999999988776  5 78999999998  3333221  


Q ss_pred             CCCcccCCCCceEEEEEecCCccEEEEEcc---CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (457)
Q Consensus       259 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  335 (457)
                             ..++=.++-|+|.| ++|+.++-   .|.+-+||+.+.+++    ..+..               ..-+-+.|
T Consensus       310 -------~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i----~~~~a---------------~~tt~~eW  362 (566)
T KOG2315|consen  310 -------PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLI----AKFKA---------------ANTTVFEW  362 (566)
T ss_pred             -------CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhc----ccccc---------------CCceEEEE
Confidence                   23555778899999 88888774   588999999987644    23332               34566899


Q ss_pred             ccCCCeEEEEe-------cCcEEEEeccCCCCceeEee
Q 012721          336 ANDGQHLLSRD-------YMNLKLWDIRMDSTPVATFK  366 (457)
Q Consensus       336 s~~g~~l~s~~-------~~~i~~wd~~~~~~~~~~~~  366 (457)
                      +|||+++++++       |+.++||+..  +..+....
T Consensus       363 ~PdGe~flTATTaPRlrvdNg~Kiwhyt--G~~l~~~~  398 (566)
T KOG2315|consen  363 SPDGEYFLTATTAPRLRVDNGIKIWHYT--GSLLHEKM  398 (566)
T ss_pred             cCCCcEEEEEeccccEEecCCeEEEEec--Cceeehhh
Confidence            99999999764       5889999995  66665443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.23  E-value=2.2e-09  Score=97.95  Aligned_cols=146  Identities=14%  Similarity=0.116  Sum_probs=115.3

Q ss_pred             CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc
Q 012721          229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  307 (457)
Q Consensus       229 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~  307 (457)
                      +...++-| ..|.|.+|++. .++....+     .-..|.+.|.++.++.+- ..|.+++.|+.+..|+.......    
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~-~g~it~~~-----st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~----  137 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVA-GGEITAKL-----STDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVII----  137 (541)
T ss_pred             CceEEEeecCCccEEEEEec-CCeEEEEE-----ecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceee----
Confidence            45567778 99999999998 55554432     135799999999999887 89999999999999999887544    


Q ss_pred             ccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCcccc
Q 012721          308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  387 (457)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  387 (457)
                      +.+..             ....+.+++.+|||..+++++ +.|++||+++ ++.+..|.+|.+++               
T Consensus       138 ~~~~~-------------~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~-kevv~~ftgh~s~v---------------  187 (541)
T KOG4547|consen  138 RIWKE-------------QKPLVSSLCISPDGKILLTAS-RQIKVLDIET-KEVVITFTGHGSPV---------------  187 (541)
T ss_pred             eeecc-------------CCCccceEEEcCCCCEEEecc-ceEEEEEccC-ceEEEEecCCCcce---------------
Confidence            55554             235688999999999999988 8999999986 89999999999987               


Q ss_pred             ceEEEcCC-----CcEEEE-EeCCCcEEEEecCC
Q 012721          388 FECSVSGD-----GLHFAT-GSYSNLLRIFSHGV  415 (457)
Q Consensus       388 ~~~~~s~d-----~~~l~s-~~~dg~i~iw~~~~  415 (457)
                      .+++|..+     |.++++ ...+.-+.+|-+..
T Consensus       188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            46666555     666654 44566788888765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.21  E-value=1.8e-07  Score=83.39  Aligned_cols=169  Identities=11%  Similarity=0.060  Sum_probs=124.0

Q ss_pred             CCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC-eEEEEEccCCeeecccc
Q 012721          229 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMRQSALCDHSA  307 (457)
Q Consensus       229 ~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-~i~lwd~~~~~~~~~~~  307 (457)
                      +|.+++...-|...|.+.. .+-.+++         ++...|.-..+..+. +-++.|..|| .+-+||.++++..    
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~-~~~~iqv---------~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~k----  395 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPW-DGYSIQV---------GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVK----  395 (668)
T ss_pred             CCcEEEEEecCcEEEECCC-CCeeEEc---------CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEE----
Confidence            6788887777888888876 4555543         466668888888777 6789999998 8999999987532    


Q ss_pred             ccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccc
Q 012721          308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD  386 (457)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                      ++...              -+.|.++..+|+|++++.+.+ ..+.+.|+++ ++....-+...+.+              
T Consensus       396 r~e~~--------------lg~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~~idkS~~~lI--------------  446 (668)
T COG4946         396 RIEKD--------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVRLIDKSEYGLI--------------  446 (668)
T ss_pred             EeeCC--------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCeeEeccccccee--------------
Confidence            22221              367999999999999999988 8999999986 44433333334443              


Q ss_pred             cceEEEcCCCcEEEEEeCCC----cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          387 KFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       387 v~~~~~s~d~~~l~s~~~dg----~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                       +.+.|||++++||-+--+|    .|+++|+.+++  +.-.....+--.+.+|-|+++-...
T Consensus       447 -tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K--iy~vTT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         447 -TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK--IYDVTTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             -EEEEEcCCceeEEEecCcceeeeeEEEEecCCCe--EEEecCCcccccCcccCCCCcEEEE
Confidence             7899999999999876655    69999999883  3333444555667778888765443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.20  E-value=7.3e-10  Score=94.30  Aligned_cols=232  Identities=10%  Similarity=0.088  Sum_probs=157.2

Q ss_pred             cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc-cceeEEEeecCCCceeeeeeccc
Q 012721           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLA  169 (457)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~  169 (457)
                      ..++..++||.            +.|++....|  ...-+++.+.|.++++|--.+ ++.-..+.               
T Consensus        14 p~ll~~~eG~~------------d~vn~~~l~~--~e~gv~~~s~drtvrv~lkrds~q~wpsI~---------------   64 (404)
T KOG1409|consen   14 PELLSKIEGSQ------------DDVNAAILIP--KEEGVISVSEDRTVRVWLKRDSGQYWPSIY---------------   64 (404)
T ss_pred             hhhhhhhcCch------------hhhhhheecc--CCCCeEEccccceeeeEEeccccccCchhh---------------
Confidence            34666778888            7788877754  444589999999999996443 32221111               


Q ss_pred             cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC
Q 012721          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (457)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~  248 (457)
                                                                   .....+++++.+.++...|+.| .+|++.-+.+..
T Consensus        65 ---------------------------------------------~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~se   99 (404)
T KOG1409|consen   65 ---------------------------------------------HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSE   99 (404)
T ss_pred             ---------------------------------------------hhCCCCceEeeeeccceEEEEEEecceEEEEEhhh
Confidence                                                         2234578899999999999999 999999998763


Q ss_pred             CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc-----------------------
Q 012721          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-----------------------  305 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~-----------------------  305 (457)
                      .-.....    +.....|...+..+-|+-.. ..+++.+.|..+.---.+.+.....                       
T Consensus       100 dfnkm~~----~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~  174 (404)
T KOG1409|consen  100 DFNKMTF----LKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHS  174 (404)
T ss_pred             hhhhcch----hhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccc
Confidence            2222211    12356788999999988776 7888888776654322222211100                       


Q ss_pred             -ccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCC
Q 012721          306 -SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS  383 (457)
Q Consensus       306 -~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (457)
                       .+..............++.+|.+.+.+++|.|..+.|.+|. |..+.+||+.-.......+.+|...+           
T Consensus       175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV-----------  243 (404)
T KOG1409|consen  175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV-----------  243 (404)
T ss_pred             cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh-----------
Confidence             00111111112233356789999999999999999999985 59999999964334456677777765           


Q ss_pred             ccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          384 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       384 ~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                          ..+..-+.-+.+++++.||.|.+|+++..
T Consensus       244 ----~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  244 ----QALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ----hhhhhhhhheeeeeccCCCeEEEEeccce
Confidence                35555566778999999999999999865

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.16  E-value=4.6e-10  Score=94.24  Aligned_cols=266  Identities=15%  Similarity=0.156  Sum_probs=154.2

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccc---eeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      +.|++|.|  ...|.++++|...|.|.++.-....   ......++.+.                               
T Consensus        27 d~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe-------------------------------   73 (460)
T COG5170          27 DKITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHE-------------------------------   73 (460)
T ss_pred             ceeeEEEe--ccccceEeecCCCceEEEeecccccccchhhhhhhcccc-------------------------------
Confidence            67999999  7889999999999999998754432   11111111100                               


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC---CEEEEeCCCeEEEEEcCCCcc----------------
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC---ETFVSADDLRINLWNLEISDQ----------------  251 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~d~~i~iwd~~~~~~----------------  251 (457)
                                    .....++.  ..-...|..+.|..++   .+|+++.|.+|++|.+.....                
T Consensus        74 --------------~EFDYLkS--leieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~  137 (460)
T COG5170          74 --------------LEFDYLKS--LEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPM  137 (460)
T ss_pred             --------------cchhhhhh--ccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccccccc
Confidence                          00000110  1123457778886543   356666999999998863200                


Q ss_pred             --e---------------eeeeecCCC--cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccc
Q 012721          252 --C---------------FNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (457)
Q Consensus       252 --~---------------~~~~~~~~~--~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~  312 (457)
                        .               ..++..+|.  .-..|...|.+++|+.+. ..++++ .|=.|.+|++......   ..+...
T Consensus       138 ~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-et~lSa-DdLrINLWnl~i~D~s---FnIVDi  212 (460)
T COG5170         138 GGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-ETLLSA-DDLRINLWNLEIIDGS---FNIVDI  212 (460)
T ss_pred             CCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-heeeec-cceeeeeccccccCCc---eEEEec
Confidence              0               011111221  124677788999999987 666654 5778999998754211   111111


Q ss_pred             cccccCcccceeccccceEEEEEccCCC--eEEEEecCcEEEEeccCCCC-----ceeEeeeccccccccccccCCCCcc
Q 012721          313 AAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKLWDIRMDST-----PVATFKIHEHLRPKLCDLYNNDSIF  385 (457)
Q Consensus       313 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  385 (457)
                         .|   ..+.....-|++..|+|...  ++.+.+.|.|++-|++...-     .+.........+.     +-...+-
T Consensus       213 ---KP---~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~-----ff~eivs  281 (460)
T COG5170         213 ---KP---HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVD-----FFEEIVS  281 (460)
T ss_pred             ---cC---ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccch-----hHHHHhh
Confidence               01   01122235688999999643  33455569999999984211     1111111110000     0011112


Q ss_pred             ccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC---------------cceeeeeccCCcceecc
Q 012721          386 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN---------------ENRKPILQAAPRARRSS  445 (457)
Q Consensus       386 ~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---------------~v~~~~~~p~~~~~~~~  445 (457)
                      .+..+.|+++|++|++-+. -+|+|||++..+.++.++.-|..               .-..+.|+.|.....+|
T Consensus       282 SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sg  355 (460)
T COG5170         282 SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSG  355 (460)
T ss_pred             hhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccc
Confidence            3368899999999998776 68999999998888888866631               12345677776665553

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.14  E-value=1.3e-09  Score=94.90  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=67.9

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEE
Q 012721          215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (457)
Q Consensus       215 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~  293 (457)
                      -+|-..++.++++||+++|+++ .|..|++-... .--.+..+      .-||.+.|..++.-++.  .|++++.|++|+
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~isl~~~~--~LlS~sGD~tlr  218 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVSTISLTDNY--LLLSGSGDKTLR  218 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheeeeeeccCc--eeeecCCCCcEE
Confidence            5899999999999999999999 99999998776 22233322      56899999999998874  699999999999


Q ss_pred             EEEccCCeee
Q 012721          294 LVDMRQSALC  303 (457)
Q Consensus       294 lwd~~~~~~~  303 (457)
                      +||+++++..
T Consensus       219 ~Wd~~sgk~L  228 (390)
T KOG3914|consen  219 LWDITSGKLL  228 (390)
T ss_pred             EEecccCCcc
Confidence            9999999765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.13  E-value=3.1e-07  Score=82.50  Aligned_cols=124  Identities=13%  Similarity=0.069  Sum_probs=78.7

Q ss_pred             EEec-CCccEEEEEccCCeEEEEEccCCeeecc-ccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-----
Q 012721          274 EFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----  346 (457)
Q Consensus       274 ~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----  346 (457)
                      .|.+ +| .++....+ |+|.+.|+...+.... ...++.. .....     .-..+.+.-++++|+++.+....     
T Consensus       200 ~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~-----~wrP~g~q~ia~~~dg~~lyV~~~~~~~  271 (352)
T TIGR02658       200 AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKAD-----GWRPGGWQQVAYHRARDRIYLLADQRAK  271 (352)
T ss_pred             ceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccc-ccccc-----ccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence            3456 66 66666655 9999999765432211 0111111 00000     00123445599999998887632     


Q ss_pred             ----c--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEe-CCCcEEEEecCCCCc
Q 012721          347 ----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVGSA  418 (457)
Q Consensus       347 ----~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~-~dg~i~iw~~~~~~~  418 (457)
                          +  +.|.++|..+ .+.+..+......                ..++++||++ +|++.+ .++.|.+.|..++ +
T Consensus       272 ~thk~~~~~V~ViD~~t-~kvi~~i~vG~~~----------------~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~-k  333 (352)
T TIGR02658       272 WTHKTASRFLFVVDAKT-GKRLRKIELGHEI----------------DSINVSQDAKPLLYALSTGDKTLYIFDAETG-K  333 (352)
T ss_pred             ccccCCCCEEEEEECCC-CeEEEEEeCCCce----------------eeEEECCCCCeEEEEeCCCCCcEEEEECcCC-e
Confidence                1  5799999986 7777776643332                5899999999 777666 5788999999999 4


Q ss_pred             eeeEE
Q 012721          419 GGITV  423 (457)
Q Consensus       419 ~~~~~  423 (457)
                      .+..+
T Consensus       334 ~i~~i  338 (352)
T TIGR02658       334 ELSSV  338 (352)
T ss_pred             EEeee
Confidence            55554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=4.6e-09  Score=101.91  Aligned_cols=200  Identities=15%  Similarity=0.130  Sum_probs=142.4

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      .+.|....+.-+...++.++.+..+.|||...+...                           ....+.+  +.      
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~---------------------------~~i~~~e--r~------  131 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVL---------------------------SKIQSDE--RC------  131 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCcee---------------------------hhcCCCc--eE------
Confidence            345555566666788888888899999998766532                           1111111  00      


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        --..++-+-.+++.-++++|+.-+.|.+|+....+.                                          
T Consensus       132 --~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~------------------------------------------  167 (967)
T KOG0974|consen  132 --TLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK------------------------------------------  167 (967)
T ss_pred             --EEEeEEEEeccCcEEEEEeccccccEEEEeccccCC------------------------------------------
Confidence              001122222256666888999999999999872211                                          


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                       +.  .+.+|.+.|..+.++.||.++++. +|.++++|++++......       ..-+|+..+
T Consensus       168 -----------------p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~-------~~fgHsaRv  221 (967)
T KOG0974|consen  168 -----------------PI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC-------TGFGHSARV  221 (967)
T ss_pred             -----------------cc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc-------cccccccee
Confidence                             00  127999999999999999999999 999999999995443331       256899999


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc-cceEEEEEccCCCeEEEEe-cC
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRD-YM  348 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~-~~  348 (457)
                      ..++|.|+   .+++++.|-+.++|+.....+     ..+..             |. ..++.++..++...++++. |+
T Consensus       222 w~~~~~~n---~i~t~gedctcrvW~~~~~~l-----~~y~~-------------h~g~~iw~~~~~~~~~~~vT~g~Ds  280 (967)
T KOG0974|consen  222 WACCFLPN---RIITVGEDCTCRVWGVNGTQL-----EVYDE-------------HSGKGIWKIAVPIGVIIKVTGGNDS  280 (967)
T ss_pred             EEEEeccc---eeEEeccceEEEEEeccccee-----hhhhh-------------hhhcceeEEEEcCCceEEEeeccCc
Confidence            99999996   799999999999997655332     23333             32 4699999999888888875 59


Q ss_pred             cEEEEeccC
Q 012721          349 NLKLWDIRM  357 (457)
Q Consensus       349 ~i~~wd~~~  357 (457)
                      .+++||+..
T Consensus       281 ~lk~~~l~~  289 (967)
T KOG0974|consen  281 TLKLWDLNG  289 (967)
T ss_pred             chhhhhhhc
Confidence            999999853

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.11  E-value=1.3e-09  Score=101.76  Aligned_cols=301  Identities=15%  Similarity=0.200  Sum_probs=185.0

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      -.+++.++..+|.|+-+|.++.-| +.+.|++..-.                       ..+.+..+..-          
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-----------------------ppr~l~h~tpw----------   68 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-----------------------PPRWLHHITPW----------   68 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-----------------------CceeeeccCcc----------
Confidence            467899999999999999999887 66778765432                       11122222222          


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc--cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                          .|-.+.|.|.+.-.+-++........+|++..  ...+..........++.+.|.+.+..++....          
T Consensus        69 ----~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs----------  134 (1081)
T KOG0309|consen   69 ----QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS----------  134 (1081)
T ss_pred             ----hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc----------
Confidence                26778887666555544444444455888654  33444444555556777777777666654433          


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                         .+..+..||+....  .++..+ ..-......++|+. ++..+|+...+.|.+||.+.+......       +++|.
T Consensus       135 ---vdt~vh~wd~rSp~--~p~ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s-------~K~~v  201 (1081)
T KOG0309|consen  135 ---VDTYVHAWDMRSPH--RPFYST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCS-------LKGHV  201 (1081)
T ss_pred             ---ccccceeeeccCCC--cceeee-ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEE-------ecccc
Confidence               23467788876432  222222 22334556788876 555666668899999999966655544       67788


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC--eEEE-
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLS-  344 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s-  344 (457)
                      ..+..++|+...-..+.+++.||+|++||.........  +....              ..+|+.-.+-|-|+  ++.- 
T Consensus       202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~--~~vtt--------------~~piw~~r~~Pfg~g~~~mp~  265 (1081)
T KOG0309|consen  202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK--RTVTT--------------NFPIWRGRYLPFGEGYCIMPM  265 (1081)
T ss_pred             eeeehHHHhhhhhhhhcccCCCCceeeecccccccccc--eeccc--------------cCcceeccccccCceeEeccc
Confidence            99999999875446789999999999999876532111  11111              24566666666433  2221 


Q ss_pred             -E--------ecCcEEEEeccCCCCceeEeeeccccccccc-cccCCCCccccceEEEcCC--CcEEEEEeCCCcEEEEe
Q 012721          345 -R--------DYMNLKLWDIRMDSTPVATFKIHEHLRPKLC-DLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFS  412 (457)
Q Consensus       345 -~--------~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~iw~  412 (457)
                       |        .++.-..|+.....+++..+.+|...+-.+- +..        -.+.+.-|  .-.|+|-+.|..+++|-
T Consensus       266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r--------~e~~~d~d~rdfQLVTWSkD~~lrlWp  337 (1081)
T KOG0309|consen  266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKR--------KECDGDYDSRDFQLVTWSKDQTLRLWP  337 (1081)
T ss_pred             cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhc--------ccccCCCCccceeEEEeecCCceEeee
Confidence             1        1123334555545678999999998752110 000        01122222  22799999999999999


Q ss_pred             cCCC
Q 012721          413 HGVG  416 (457)
Q Consensus       413 ~~~~  416 (457)
                      +.+.
T Consensus       338 I~~~  341 (1081)
T KOG0309|consen  338 IDSQ  341 (1081)
T ss_pred             ccHH
Confidence            8764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.11  E-value=2.9e-08  Score=81.95  Aligned_cols=169  Identities=13%  Similarity=0.024  Sum_probs=110.3

Q ss_pred             eeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721          221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~  299 (457)
                      +.+++++++++++++. +...|..|.+...++.+.-+.     ...-.+.-.+.+|+... ..+|++..||++.|||++.
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-----~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-----EAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRN  234 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE-----ecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecc
Confidence            7789999999999987 889999999885554433221     22334445778899988 8999999999999999998


Q ss_pred             CeeeccccccccccccccCcccceeccccceEEEEEccCCC--eEEEEec-CcEEEEeccCCCCceeEeeeccccccccc
Q 012721          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  376 (457)
                      ......    ..        ...-..|.+.+..+.|++.|.  +|..... +.+.+.|++. .+....+...+...    
T Consensus       235 ~~tpm~----~~--------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~----  297 (344)
T KOG4532|consen  235 MATPMA----EI--------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVE----  297 (344)
T ss_pred             cccchh----hh--------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCcccc----
Confidence            642211    10        111234789999999998663  3444433 8999999986 55544444333220    


Q ss_pred             cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      ....+..+   +...|+.++..+.+.+++. +.=|++.+.
T Consensus       298 ~~~~tq~i---fgt~f~~~n~s~~v~~e~~-~ae~ni~sr  333 (344)
T KOG4532|consen  298 RKHNTQHI---FGTNFNNENESNDVKNELQ-GAEYNILSR  333 (344)
T ss_pred             cccccccc---ccccccCCCcccccccchh-hheeecccc
Confidence            00111122   4677887777776666643 445666544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.10  E-value=3.2e-07  Score=95.55  Aligned_cols=187  Identities=13%  Similarity=0.140  Sum_probs=105.4

Q ss_pred             eEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecC--CCccc------CCCCceEEEEEecCCccEEEEEccCCe
Q 012721          222 NSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMD------DLTEVITSAEFHPIYCNLLAYSSSRGF  291 (457)
Q Consensus       222 ~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~------~~~~~i~~v~~~p~~~~~l~~~~~dg~  291 (457)
                      ..++++| ++.++++. .++.|++||.. .+... .+...  .....      ..-.....|+++|++..++++-+.++.
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~-~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNIS-DGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECC-CCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            4789999 45555665 88999999987 33322 11100  00001      112345779999998336666677899


Q ss_pred             EEEEEccCCeeeccccccccccccccCcccce--------eccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCce
Q 012721          292 VRLVDMRQSALCDHSARILRDAAESHGSKSFF--------TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV  362 (457)
Q Consensus       292 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~  362 (457)
                      |++||+.++....    ........+.....+        ...-..-..++++++|.++++-.. +.|++||..+ +. +
T Consensus       764 Irv~D~~tg~~~~----~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~-v  837 (1057)
T PLN02919        764 IRALDLKTGGSRL----LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR-V  837 (1057)
T ss_pred             EEEEECCCCcEEE----EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce-E
Confidence            9999998754210    000000000000000        001112358899999987776655 9999999864 33 3


Q ss_pred             eEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721          363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                      ..+.+....... ..............++++++|+.+++-+.+++|++||+.+++
T Consensus       838 ~tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        838 TTLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EEEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            333322110000 000000000011579999999988888899999999999874

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.09  E-value=1.5e-07  Score=96.04  Aligned_cols=174  Identities=13%  Similarity=0.102  Sum_probs=99.4

Q ss_pred             eEEEeCCCCCEEEEe-C---CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          222 NSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      .+++|.|.|++||+. .   ...|.+|..+  |.....+.++   +......|..++|++++ ..||..-.|. |.+|-.
T Consensus       260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~---~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  260 GALSWRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLR---FDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTR  332 (928)
T ss_pred             CCccCCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecC---CCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEe
Confidence            478999999999996 2   4567777765  5555444433   23456789999999999 9999877665 999988


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-eEEEEec-CcEEEEec----cCC-C------CceeE
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDI----RMD-S------TPVAT  364 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~-~~i~~wd~----~~~-~------~~~~~  364 (457)
                      .+-.-..+..-.+..              ...+..+.|+|... .|...+. |.+..+++    ... +      ..+..
T Consensus       333 ~NYHWYLKqei~~~~--------------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaV  398 (928)
T PF04762_consen  333 SNYHWYLKQEIRFSS--------------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAV  398 (928)
T ss_pred             eCCEEEEEEEEEccC--------------CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEE
Confidence            774322221111111              12344477887532 2333332 44443332    110 0      01222


Q ss_pred             eeeccccc--------cccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          365 FKIHEHLR--------PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       365 ~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      +.|..-.+        +...-.+.-.....|.+++|++++..+++-..||.|.+|.....
T Consensus       399 IDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  399 IDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             EeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            22211111        10000111111123478999999988999999999999986543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.07  E-value=6.6e-08  Score=86.15  Aligned_cols=146  Identities=12%  Similarity=0.127  Sum_probs=107.9

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEe-CCC-eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeE
Q 012721          215 HAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (457)
Q Consensus       215 ~~h~~~v~~~~~~~~~~~l~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i  292 (457)
                      .+|.+.|.-..+.-+++-++.| .|| .+-|+|.+ .++...        +.+.-+.|.++..+|+| +.++.+.....|
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-~~e~kr--------~e~~lg~I~av~vs~dG-K~~vvaNdr~el  425 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-GGEVKR--------IEKDLGNIEAVKVSPDG-KKVVVANDRFEL  425 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecC-CceEEE--------eeCCccceEEEEEcCCC-cEEEEEcCceEE
Confidence            3566678777787778888888 888 99999998 454433        34566889999999999 999999999999


Q ss_pred             EEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE---ec--CcEEEEeccCCCCceeEeee
Q 012721          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY--MNLKLWDIRMDSTPVATFKI  367 (457)
Q Consensus       293 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~---~~--~~i~~wd~~~~~~~~~~~~~  367 (457)
                      .++|+.+++..     ..+.            ...+-|+...|+|+++++|-+   +.  ..|+++|+.. ++....-..
T Consensus       426 ~vididngnv~-----~idk------------S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vTT~  487 (668)
T COG4946         426 WVIDIDNGNVR-----LIDK------------SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVTTP  487 (668)
T ss_pred             EEEEecCCCee-----Eecc------------cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEecCC
Confidence            99999998643     2221            012569999999999999965   22  8899999974 454433322


Q ss_pred             ccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (457)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  404 (457)
                      ...-                ++-+|.||+++|.--+.
T Consensus       488 ta~D----------------fsPaFD~d~ryLYfLs~  508 (668)
T COG4946         488 TAYD----------------FSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             cccc----------------cCcccCCCCcEEEEEec
Confidence            2211                47899999998876553

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=1.9e-07  Score=87.58  Aligned_cols=166  Identities=10%  Similarity=0.060  Sum_probs=95.5

Q ss_pred             CCeeEEEeCCCCCEEEEe----CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCC--e
Q 012721          219 FNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--F  291 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg--~  291 (457)
                      +......|+|||+.++..    .+..|+++|+. .+...++        ..+........|+||| +.|+..+ ..+  .
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~L--------T~~~~~d~~p~~SPDG-~~I~F~Sdr~g~~~  302 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQI--------TNYPGIDVNGNFVEDD-KRIVFVSDRLGYPN  302 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEEc--------ccCCCccCccEECCCC-CEEEEEECCCCCce
Confidence            345567899999887653    34678888887 4444332        2222223455799999 6555554 334  5


Q ss_pred             EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec----------CcEEEEeccCCCCc
Q 012721          292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----------MNLKLWDIRMDSTP  361 (457)
Q Consensus       292 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----------~~i~~wd~~~~~~~  361 (457)
                      |.++|+.+++..    ++...               +. ....|+|+|++|+....          ..|.+.|+.. +. 
T Consensus       303 Iy~~dl~~g~~~----rlt~~---------------g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-  360 (419)
T PRK04043        303 IFMKKLNSGSVE----QVVFH---------------GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-  360 (419)
T ss_pred             EEEEECCCCCeE----eCccC---------------CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-
Confidence            777777765432    11111               11 12489999999985421          2577777764 33 


Q ss_pred             eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-C--cEEEEecCCCCceeeEEecCCCcceeee
Q 012721          362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGVGSAGGITVEAGKNENRKPI  434 (457)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~v~~~~  434 (457)
                      ...+......                ....|+|||+.|+....+ +  .+.+.++...  ....+....+.+...+
T Consensus       361 ~~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~--~~~~l~~~~g~~~~p~  418 (419)
T PRK04043        361 IRRLTANGVN----------------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN--KSFLFPLKVGKIQSID  418 (419)
T ss_pred             eEECCCCCCc----------------CCeEECCCCCEEEEEEccCCcEEEEEEecCCC--eeEEeecCCCccCCCC
Confidence            3334332111                258999999988766543 3  3556666543  3444444445554443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=1.8e-07  Score=87.58  Aligned_cols=111  Identities=15%  Similarity=0.097  Sum_probs=64.6

Q ss_pred             EEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---------
Q 012721          223 SISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---------  289 (457)
Q Consensus       223 ~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---------  289 (457)
                      ...|+|||+.|+..  ..+  .|+++|+. .+...++.      ..+..    ...|+|+| +.|+.....         
T Consensus       281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~rlt------~~g~~----~~~~SPDG-~~Ia~~~~~~~~~~~~~~  348 (419)
T PRK04043        281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQVV------FHGKN----NSSVSTYK-NYIVYSSRETNNEFGKNT  348 (419)
T ss_pred             ccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEeCc------cCCCc----CceECCCC-CEEEEEEcCCCcccCCCC
Confidence            45799999887765  223  68888887 44443331      11211    24899999 766655533         


Q ss_pred             CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-C--cEEEEeccCCCCceeEe
Q 012721          290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M--NLKLWDIRMDSTPVATF  365 (457)
Q Consensus       290 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~--~i~~wd~~~~~~~~~~~  365 (457)
                      ..|.+.|+.++...     .+..              ........|+|||+.|+... . +  .+.+.++.  +.....+
T Consensus       349 ~~I~v~d~~~g~~~-----~LT~--------------~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~--g~~~~~l  407 (419)
T PRK04043        349 FNLYLISTNSDYIR-----RLTA--------------NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN--YNKSFLF  407 (419)
T ss_pred             cEEEEEECCCCCeE-----ECCC--------------CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecC--CCeeEEe
Confidence            36788888776422     1111              01223578999999887543 2 3  35555554  5444444


Q ss_pred             e
Q 012721          366 K  366 (457)
Q Consensus       366 ~  366 (457)
                      .
T Consensus       408 ~  408 (419)
T PRK04043        408 P  408 (419)
T ss_pred             e
Confidence            4

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=1.8e-09  Score=92.08  Aligned_cols=170  Identities=16%  Similarity=0.118  Sum_probs=119.6

Q ss_pred             CCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccc
Q 012721          230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  309 (457)
Q Consensus       230 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~  309 (457)
                      +-.+++|.+..|-+-|+++ +... .       +. ..+.|.++.|...+ +++..|..+|.|..+|++.+..-    ..
T Consensus       225 gyhfs~G~sqqv~L~nvet-g~~q-s-------f~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~  289 (425)
T KOG2695|consen  225 GYHFSVGLSQQVLLTNVET-GHQQ-S-------FQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NG  289 (425)
T ss_pred             eeeecccccceeEEEEeec-cccc-c-------cc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CC
Confidence            4445556788888888883 3222 1       22 45678889999888 99999999999999999986211    11


Q ss_pred             ccccccccCcccceeccccceEEEEEcc-CCCeEEEEe-cCcEEEEeccCCCCc---eeEeeeccccccccccccCCCCc
Q 012721          310 LRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSI  384 (457)
Q Consensus       310 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~-~~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  384 (457)
                      +         .....-|.+.|+++..-. ++++|++.+ +|+|++||++. .+.   +.++.+|.+....          
T Consensus       290 ~---------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~----------  349 (425)
T KOG2695|consen  290 W---------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAY----------  349 (425)
T ss_pred             c---------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccc----------
Confidence            1         112234678899988776 677777665 49999999986 455   8889998775321          


Q ss_pred             cccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC----cceeeeeccC
Q 012721          385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN----ENRKPILQAA  438 (457)
Q Consensus       385 ~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~----~v~~~~~~p~  438 (457)
                         .-+...+....|+++++|.-.+||.++.| ....++.....    .+.+++|...
T Consensus       350 ---l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~tipf~~s~~e~d~~sv~~~sr  403 (425)
T KOG2695|consen  350 ---LPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTIPFPYSASEVDIPSVAFDSR  403 (425)
T ss_pred             ---cccccccccceEEEccCeeEEEEEecccC-ceeeccCCCCccccccccceehhcc
Confidence               23566778889999999999999999999 66665544333    3444444433

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.02  E-value=1.2e-07  Score=85.27  Aligned_cols=308  Identities=12%  Similarity=0.079  Sum_probs=169.7

Q ss_pred             CceEEEEECCCCCEEEEEeCCC---------------eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGG---------------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF   97 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (457)
                      ..|.-+.|||.++||.|=+..+               .+.+||..++..+.-..+.-++  .-+-++--++-...+...+
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~--~~~Wp~~k~s~~D~y~ARv  149 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP--YLGWPVLKFSIDDKYVARV  149 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc--ccccceeeeeecchhhhhh
Confidence            4688999999999999865433               4899999887753111000000  0000000000001111111


Q ss_pred             ccCCcccc---------ccccccccCcEEEEEEEecCCCCEEEE-----eeCCCeEEEEEecccceeEEEeecCCCceee
Q 012721           98 QSHEPEFD---------YLKSLEIEEKINRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMDHFPFVSS  163 (457)
Q Consensus        98 ~~h~~~~~---------~~~~~~~~~~V~~v~~~~s~~~~~l~s-----~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  163 (457)
                      -+|+-.+.         .++.+. ...|....|+|..++..|+.     ...++++++|.+..+.......+-... -+.
T Consensus       150 v~~sl~i~e~t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~-~~q  227 (561)
T COG5354         150 VGSSLYIHEITDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS-GVQ  227 (561)
T ss_pred             ccCeEEEEecCCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec-ccE
Confidence            12111110         111111 15688888866545556665     457889999998866554443322111 112


Q ss_pred             eeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE--e-CCCe
Q 012721          164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLR  240 (457)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~  240 (457)
                      +.|......+++... ...  ..+-.+-....+.++++.    ...+++. .+-.++|...+|.|.++.+++  | .+..
T Consensus       228 LkW~~~g~~ll~l~~-t~~--ksnKsyfgesnLyl~~~~----e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~  299 (561)
T COG5354         228 LKWQVLGKYLLVLVM-THT--KSNKSYFGESNLYLLRIT----ERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPAS  299 (561)
T ss_pred             EEEecCCceEEEEEE-Eee--ecccceeccceEEEEeec----cccccee-ccccccceeeeecccCCceeEEecccccc
Confidence            222222221111111 000  000001111245566554    2233333 245789999999998887765  5 8999


Q ss_pred             EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---CeEEEEEccCCeeecccccccccccccc
Q 012721          241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESH  317 (457)
Q Consensus       241 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      +.++|++ .. ....+         ....=..+.|+|.+ ++++.++-|   |.|.+||......+.   ..+.+     
T Consensus       300 ~s~~~lr-~N-l~~~~---------Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~~---~~~~~-----  359 (561)
T COG5354         300 VSVFDLR-GN-LRFYF---------PEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKVA---GAFNG-----  359 (561)
T ss_pred             eeecccc-cc-eEEec---------CCcccccccccCcc-cEEEEecCCccccceEEeccCCceEEE---EEeec-----
Confidence            9999998 33 22221         12233456799999 888887754   789999987754321   12222     


Q ss_pred             CcccceeccccceEEEEEccCCCeEEEEe-------cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceE
Q 012721          318 GSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC  390 (457)
Q Consensus       318 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-------~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  390 (457)
                                ...+-+.|+||++++.+..       |..|+|||+.  +..+.      ..                +.+
T Consensus       360 ----------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~--g~~~f------el----------------~~~  405 (561)
T COG5354         360 ----------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY--GAKVF------EL----------------TNI  405 (561)
T ss_pred             ----------CCceEeeccCCceEEEecCCCcccccCcceEEEEec--Cchhh------hh----------------hhc
Confidence                      3456678999999998652       4789999995  44433      11                578


Q ss_pred             EEcCCCcEEEEEeCCC
Q 012721          391 SVSGDGLHFATGSYSN  406 (457)
Q Consensus       391 ~~s~d~~~l~s~~~dg  406 (457)
                      .|.|.+++..+.+.+.
T Consensus       406 ~W~p~~~~~ttsSs~~  421 (561)
T COG5354         406 TWDPSGQYVTTSSSCP  421 (561)
T ss_pred             cccCCcccceeeccCC
Confidence            8999888888777655

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=2.2e-08  Score=88.51  Aligned_cols=325  Identities=15%  Similarity=0.147  Sum_probs=195.5

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|+.+.-+. .+++.+++.||.++.|.-....                        ..+++..+..|.       
T Consensus         6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~is------------------------GvEfVKhFraHL-------   53 (558)
T KOG0882|consen    6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRIS------------------------GVEFVKHFRAHL-------   53 (558)
T ss_pred             hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCcc------------------------ceeehhhhHHHH-------
Confidence            45888888886654 5799999999999999855422                        224667778887       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeC-CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                           ..|.+++.  +-++-++.+.+. |..++++|+++-.....++...-+...+....+.+.           ..+..
T Consensus        54 -----~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~-----------~s~IA  115 (558)
T KOG0882|consen   54 -----GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDK-----------ISLIA  115 (558)
T ss_pred             -----HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCe-----------eeeEE
Confidence                 66777877  678888888776 999999999876555444433322111111111100           00011


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceee---eeecCCC--
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN---IVDMKPS--  261 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~---~~~~~~~--  261 (457)
                      -+....+.+.++|.....  .....+..-|..+|.++.+++-+..+++. ..|.|.-|..+..-+..+   .+.++..  
T Consensus       116 Vs~~~sg~i~VvD~~~d~--~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd  193 (558)
T KOG0882|consen  116 VSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD  193 (558)
T ss_pred             eecccCCCcEEECCcCCc--CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccch
Confidence            111223345555544322  22222335689999999999999999999 899999999872111110   1111111  


Q ss_pred             --cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCc---------------cccee
Q 012721          262 --NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS---------------KSFFT  324 (457)
Q Consensus       262 --~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~  324 (457)
                        .+........++.|+|++ ..+.+-+.|..|++++.+++++....-......+..+..               ...+.
T Consensus       194 Ly~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele  272 (558)
T KOG0882|consen  194 LYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE  272 (558)
T ss_pred             hhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence              123345678899999999 999999999999999999987542111111000000000               01123


Q ss_pred             cccc-ceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccC--------------CCCccccce
Q 012721          325 EIIA-SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN--------------NDSIFDKFE  389 (457)
Q Consensus       325 ~h~~-~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~v~~  389 (457)
                      .|.. .-+.+.|...|++|+-++-=.|++.++.+ +..++.+...+...-..-.+|+              .+.    -.
T Consensus       273 k~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~n----p~  347 (558)
T KOG0882|consen  273 KHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNN----PL  347 (558)
T ss_pred             hhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccC----cc
Confidence            3433 34577899999999998876688888875 5555444322211100001111              011    12


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEE
Q 012721          390 CSVSGDGLHFATGSYSNLLRIF  411 (457)
Q Consensus       390 ~~~s~d~~~l~s~~~dg~i~iw  411 (457)
                      +.+-+|..+++++-..++++++
T Consensus       348 ~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  348 LEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             cccCCCCeEEEeeeecceEEEE
Confidence            3466777788888888888888

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.99  E-value=3.1e-06  Score=76.18  Aligned_cols=226  Identities=12%  Similarity=0.060  Sum_probs=125.8

Q ss_pred             cCCCCEEEEeeC----------CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          124 APNGSMFILSTN----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       124 s~~~~~l~s~s~----------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      +++++.|+.+..          +..|.+||..+.+....+.....++                                 
T Consensus        54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~---------------------------------  100 (352)
T TIGR02658        54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR---------------------------------  100 (352)
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch---------------------------------
Confidence            789888877654          7899999999998876655432210                                 


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                           ......-..++++|||++++..  . +..|.+.|+. .++.+..+.++        +..
T Consensus       101 ---------------------~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~-~~kvv~ei~vp--------~~~  150 (352)
T TIGR02658       101 ---------------------FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE-GKAFVRMMDVP--------DCY  150 (352)
T ss_pred             ---------------------hhccCccceEEECCCCCEEEEecCCCCCEEEEEECC-CCcEEEEEeCC--------CCc
Confidence                                 0012234468899999999976  4 7999999999 56666554321        111


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCe-eeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEecC
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYM  348 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~~  348 (457)
                      .-...+++. .+  .-+.||......+.... .......++.. .+.+.     .  ..+    .|.+ +|+++.....|
T Consensus       151 ~vy~t~e~~-~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~-~~~~v-----~--~rP----~~~~~dg~~~~vs~eG  215 (352)
T TIGR02658       151 HIFPTANDT-FF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHP-EDEYL-----I--NHP----AYSNKSGRLVWPTYTG  215 (352)
T ss_pred             EEEEecCCc-cE--EEeecCceEEEEecCCCceEEeeeeeecC-Ccccc-----c--cCC----ceEcCCCcEEEEecCC
Confidence            111121211 11  12234433332222211 00000111111 00000     0  112    4455 88888877669


Q ss_pred             cEEEEeccCC----CCceeEeeecc---ccccccccccCCCCccccceEEEcCCCcEEEEEeC----------CCcEEEE
Q 012721          349 NLKLWDIRMD----STPVATFKIHE---HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIF  411 (457)
Q Consensus       349 ~i~~wd~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~----------dg~i~iw  411 (457)
                      .|.+.|+...    .+....+....   ++.+        ..+   .-++++|+++.++....          .+.|.++
T Consensus       216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP--------~g~---q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi  284 (352)
T TIGR02658       216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP--------GGW---QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV  284 (352)
T ss_pred             eEEEEecCCCcceecceeeeccccccccccCC--------Ccc---eeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence            9999996431    12222221111   1111        011   24899999998887432          2479999


Q ss_pred             ecCCCCceeeEEecCCCcceeeeeccCCc
Q 012721          412 SHGVGSAGGITVEAGKNENRKPILQAAPR  440 (457)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  440 (457)
                      |..++ +....+.. ...+..++++||+.
T Consensus       285 D~~t~-kvi~~i~v-G~~~~~iavS~Dgk  311 (352)
T TIGR02658       285 DAKTG-KRLRKIEL-GHEIDSINVSQDAK  311 (352)
T ss_pred             ECCCC-eEEEEEeC-CCceeeEEECCCCC
Confidence            99999 44454443 45889999999988

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.99  E-value=4.3e-09  Score=107.39  Aligned_cols=187  Identities=17%  Similarity=0.212  Sum_probs=138.2

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|.++.=  .|...+.++|+.||.|++|....+..+...                                        
T Consensus      2209 ~~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~---------------------------------------- 2246 (2439)
T KOG1064|consen 2209 ENVRRMTS--HPSDPYYLTGSQDGSVRMFEWGHGQQVVCF---------------------------------------- 2246 (2439)
T ss_pred             CceeeecC--CCCCceEEecCCCceEEEEeccCCCeEEEe----------------------------------------
Confidence            34555554  466678999999999999998776544322                                        


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                            +.             .+. ..|+.+.|+.+|+.+..+ .||.+.+|...  .+...       ..+.|.....+
T Consensus      2247 ------rt-------------~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~-------s~qchnk~~~D 2297 (2439)
T KOG1064|consen 2247 ------RT-------------AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYT-------SWQCHNKALSD 2297 (2439)
T ss_pred             ------ec-------------cCc-chhhhhhhcccCCceeeeccCCceeecccC--Cccee-------ccccCCccccc
Confidence                  11             233 688899999999999999 99999999987  33332       25678888888


Q ss_pred             EEEecCCccEEEEEc---cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721          273 AEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (457)
Q Consensus       273 v~~~p~~~~~l~~~~---~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~  348 (457)
                      +.|-.   ..+++++   .++.+.+||......      .          .-.-..|.+.++++++-|..++|++|+. |
T Consensus      2298 f~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~------~----------s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2298 FRFIG---SLLATAGRSSDNRNVCLWDTLLPPM------N----------SLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             eeeee---hhhhccccCCCCCcccchhcccCcc------c----------ceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence            88876   3466654   578899999654210      0          0011568899999999999999999986 9


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      .|++||++. .++.+.++.                        +. ...++++|+..|.|+||++..-
T Consensus      2359 ~v~l~D~rq-rql~h~~~~------------------------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2359 EVCLFDIRQ-RQLRHTFQA------------------------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             cEEEeehHH-HHHHHHhhh------------------------hh-hhheeeccCcccceEEEEcccc
Confidence            999999985 555544432                        22 4568999999999999999865

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=8.6e-08  Score=90.46  Aligned_cols=221  Identities=11%  Similarity=0.133  Sum_probs=129.0

Q ss_pred             cCCceEEEEECCCC------------CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec
Q 012721           31 DVDIVSAIEFDKTG------------DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ   98 (457)
Q Consensus        31 h~~~V~~~~~s~~~------------~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (457)
                      |...|+.+.|.|-.            -+||+++..|.|.|||...+..                           +..++
T Consensus        54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~---------------------------~~~l~  106 (1062)
T KOG1912|consen   54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV---------------------------INWLS  106 (1062)
T ss_pred             CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh---------------------------hhhhc
Confidence            78999999998731            2678889999999999887653                           23456


Q ss_pred             cCCccccccccccccCcEEEEEEEecCCC--CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccccccc
Q 012721           99 SHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  176 (457)
Q Consensus        99 ~h~~~~~~~~~~~~~~~V~~v~~~~s~~~--~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (457)
                      .|.            ++|..++|.+..+.  ..|++-....++.+|+..+|+......+.. ....++.+.+-+.+.++.
T Consensus       107 ~~~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen  107 HSN------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             CCC------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEE
Confidence            666            88999999886554  356666777889999999987654433322 123446666666555444


Q ss_pred             CCCCCceeccC--CccccccceEEEeccCcccc---cccee-eccCCCC---------CeeEEEeCCCCCEEEEe-CCCe
Q 012721          177 HNPPSFAHGYH--LEWTENMATKIANVGNSVHA---RCQKV-YPHAHDF---------NINSISNNSDCETFVSA-DDLR  240 (457)
Q Consensus       177 ~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~---~~~~~-~~~~h~~---------~v~~~~~~~~~~~l~~~-~d~~  240 (457)
                      .+....-++..  +.-.++...+...+......   ....+ ....++.         ....++|+|.-+.++.. ....
T Consensus       174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre  253 (1062)
T KOG1912|consen  174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE  253 (1062)
T ss_pred             EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence            33222111111  11112222233322221000   00000 0000000         01235668865555444 8899


Q ss_pred             EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc-cEEEEEccCCeEEEEEccC
Q 012721          241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       241 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~lwd~~~  299 (457)
                      +.++|++ -..++.++.++       .+.+.-+.+-|++. ..|.+.-.||.+.+|-.+.
T Consensus       254 llv~dle-~~~~l~vvpie-------r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  254 LLVFDLE-YECCLAVVPIE-------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             eEEEcch-hhceeEEEEec-------cCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            9999999 56666654322       23344556666652 4678888999999997654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.97  E-value=2.1e-06  Score=87.98  Aligned_cols=231  Identities=10%  Similarity=0.073  Sum_probs=145.3

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEE----EecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLW----KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                      +.|.++.|+  ++...++.+..+|.|.+.    +........+                                     
T Consensus        76 ~~ivs~~yl--~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V-------------------------------------  116 (928)
T PF04762_consen   76 DKIVSFQYL--ADSESLCIALASGDIILVREDPDPDEDEIEIV-------------------------------------  116 (928)
T ss_pred             CcEEEEEec--cCCCcEEEEECCceEEEEEccCCCCCceeEEE-------------------------------------
Confidence            679999995  677788888999999888    4433332221                                     


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeec----------
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM----------  258 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~----------  258 (457)
                                               ..-...|.+++||||++.|+.. .++.|.+.+..-  ..+....+          
T Consensus       117 -------------------------G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f--d~i~E~~l~~~~~~~~~~  169 (928)
T PF04762_consen  117 -------------------------GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF--DPISEVPLDSDDFGESKH  169 (928)
T ss_pred             -------------------------EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc--eEEEEeecCccccCCCce
Confidence                                     1234579999999999999998 888887765431  11100000          


Q ss_pred             -------CCC-------------------------cccCCCCceEEEEEecCCccEEEEEcc---C---CeEEEEEccCC
Q 012721          259 -------KPS-------------------------NMDDLTEVITSAEFHPIYCNLLAYSSS---R---GFVRLVDMRQS  300 (457)
Q Consensus       259 -------~~~-------------------------~~~~~~~~i~~v~~~p~~~~~l~~~~~---d---g~i~lwd~~~~  300 (457)
                             |..                         .+. ....-..|+|..|| .++|+.+.   .   ..++||+-. |
T Consensus       170 VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G  246 (928)
T PF04762_consen  170 VSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-G  246 (928)
T ss_pred             eeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-c
Confidence                   000                         011 33355789999999 99998874   3   579999865 4


Q ss_pred             eeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---c-CcEEEEeccCCCCceeEeeeccccccccc
Q 012721          301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (457)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  376 (457)
                      .+..    +-+.             -.+--.+++|.|.|.+||+..   + ..|.+|.-+  |-.-..|......     
T Consensus       247 ~L~s----tSE~-------------v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~~~~-----  302 (928)
T PF04762_consen  247 ELQS----TSEP-------------VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLRFDP-----  302 (928)
T ss_pred             eEEe----cccc-------------CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecCCCC-----
Confidence            4331    1110             012235789999999999864   2 567777653  4333333332100     


Q ss_pred             cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC-ceeeEEecC-CCcceeeeeccCCcceec
Q 012721          377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGITVEAG-KNENRKPILQAAPRARRS  444 (457)
Q Consensus       377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~-~~~v~~~~~~p~~~~~~~  444 (457)
                            .-..|..+.|++|+..||..-.|. |.+|-..+-. ...+.+... ...+..+.|+|..|..+.
T Consensus       303 ------~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~  365 (928)
T PF04762_consen  303 ------EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH  365 (928)
T ss_pred             ------CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence                  001226899999999999988665 9999988762 122333322 334556999999877654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.95  E-value=1.7e-06  Score=72.76  Aligned_cols=37  Identities=22%  Similarity=0.152  Sum_probs=31.2

Q ss_pred             ceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       388 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      ..+..||||..||+...+|.|.+|++.+- ........
T Consensus       233 ~kmSlSPdg~~La~ih~sG~lsLW~iPsL-~~~~~W~~  269 (282)
T PF15492_consen  233 FKMSLSPDGSLLACIHFSGSLSLWEIPSL-RLQRSWKQ  269 (282)
T ss_pred             EEEEECCCCCEEEEEEcCCeEEEEecCcc-hhhcccch
Confidence            68999999999999999999999999987 44444433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.90  E-value=2.1e-08  Score=82.37  Aligned_cols=96  Identities=15%  Similarity=0.087  Sum_probs=69.6

Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                      -+..+.|+.+......+.+   . ....|.+++-+|..+.+ ++| .||.+-+||.+......       ..+..|...+
T Consensus       158 ~d~~~a~~~~p~~t~~~~~---~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------S~l~ahk~~i  226 (319)
T KOG4714|consen  158 QDNFYANTLDPIKTLIPSK---K-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------SLLKAHKAEI  226 (319)
T ss_pred             ccceeeecccccccccccc---c-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------HHHHHhhhhh
Confidence            3356667665443322222   1 12348999999966555 456 99999999999432222       2378899999


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~  299 (457)
                      ..+-|+|..+..|+++++||.+.-||..+
T Consensus       227 ~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  227 WEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hheeccCCCchheeEecCCCcEEEEcCCC
Confidence            99999998889999999999999999875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.90  E-value=1e-08  Score=92.92  Aligned_cols=284  Identities=13%  Similarity=0.112  Sum_probs=168.1

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..+|+..|+.++--.+.+-+++++.|++|++|.+......         +           ....+-.+++.|.      
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------~-----------~tsaCQfTY~aHk------  784 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------I-----------GTSACQFTYQAHK------  784 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------c-----------ccceeeeEhhhcc------
Confidence            4568999999887777888999999999999998754320         0           1223455678888      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            .+|+++.|+  .+..++  ++.|+.|.+||.--++..........                             
T Consensus       785 ------k~i~~igfL--~~lr~i--~ScD~giHlWDPFigr~Laq~~dapk-----------------------------  825 (1034)
T KOG4190|consen  785 ------KPIHDIGFL--ADLRSI--ASCDGGIHLWDPFIGRLLAQMEDAPK-----------------------------  825 (1034)
T ss_pred             ------Ccccceeee--ecccee--eeccCcceeecccccchhHhhhcCcc-----------------------------
Confidence                  899999996  454454  45688999999766654432110000                             


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                 .+..+.|.|+.-- +...+.+ | ...+|+++|.+ ...-...+.+-  +-.+
T Consensus       826 ---------------------------~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaR-sce~~~E~kVc--na~~  874 (1034)
T KOG4190|consen  826 ---------------------------EGAGGNIKCLENV-DRHILIAGCSAESTVKLFDAR-SCEWTCELKVC--NAPG  874 (1034)
T ss_pred             ---------------------------cCCCceeEecccC-cchheeeeccchhhheeeecc-cccceeeEEec--cCCC
Confidence                                       1222334443321 3334444 4 78999999998 44333333221  1244


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE-
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-  344 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-  344 (457)
                      ....+.+++..+.| +.++.+-.+|.|.+.|.++++.+    ..|..             .......++ .|..+.|+. 
T Consensus       875 Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vI----Nswrp-------------mecdllqla-apsdq~L~~s  935 (1034)
T KOG4190|consen  875 PNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVI----NSWRP-------------MECDLLQLA-APSDQALAQS  935 (1034)
T ss_pred             CchheeEEEeccCc-chhhHHhcCCcEEEEecCCCcee----ccCCc-------------ccchhhhhc-CchhHHHHhh
Confidence            55778999999999 99999999999999999998654    22221             011222222 355566664 


Q ss_pred             EecCcEEE-EeccCCCCceeEeeeccccccccccccCCCCccccceEEEc-CCCcEEEEEeCCCcEEEEecCCCC---ce
Q 012721          345 RDYMNLKL-WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGVGS---AG  419 (457)
Q Consensus       345 ~~~~~i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~~~dg~i~iw~~~~~~---~~  419 (457)
                      +.+.++.+ |..-. +....+.+....+                  ..|- .-|..|+++.....+.+|.-....   ..
T Consensus       936 aldHslaVnWhald-gimh~q~kpppep------------------ahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~st  996 (1034)
T KOG4190|consen  936 ALDHSLAVNWHALD-GIMHLQDKPPPEP------------------AHFLQSVGPSLVTAQNGNILGVYADSAELHAEST  996 (1034)
T ss_pred             cccceeEeeehhcC-CeeeeccCCCCcc------------------hhhhhccCceeEEeccCcEEEEEecchhhhhhhh
Confidence            45677777 76642 4333333322221                  1111 124556666666667777422110   11


Q ss_pred             eeEE--ecCCCcceeeeeccCCcceecc
Q 012721          420 GITV--EAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       420 ~~~~--~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      +.++  ....+..++++.-|-+.+.+.|
T Consensus       997 itKiR~d~f~G~lTala~LPLN~afLaG 1024 (1034)
T KOG4190|consen  997 ITKIRPDEFPGTLTALAPLPLNCAFLAG 1024 (1034)
T ss_pred             hccccccccCCccceeeeccccchhhcc
Confidence            1122  2334566777777777666653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.88  E-value=6.7e-09  Score=94.00  Aligned_cols=221  Identities=22%  Similarity=0.265  Sum_probs=140.8

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (457)
                      .+..+.||+            .+|..++-.  .+.+.|++++.|++|++|.++...-..                     
T Consensus       727 rL~nf~GH~------------~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~---------------------  771 (1034)
T KOG4190|consen  727 RLCNFTGHQ------------EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEI---------------------  771 (1034)
T ss_pred             eeecccCcH------------HHhHHHHhc--ccccceeeccCCceEEEEEeccccCcc---------------------
Confidence            345677787            678777663  455689999999999999987531100                     


Q ss_pred             ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcce
Q 012721          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC  252 (457)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~  252 (457)
                                                      .+..|.-++ +.|..+|.++.|-.+-++++++ |+.|.+||.- .+..
T Consensus       772 --------------------------------~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPF-igr~  816 (1034)
T KOG4190|consen  772 --------------------------------GTSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPF-IGRL  816 (1034)
T ss_pred             --------------------------------ccceeeeEh-hhccCcccceeeeeccceeeec-cCcceeeccc-ccch
Confidence                                            011233334 7899999999998777766554 7889999987 3333


Q ss_pred             ee-eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721          253 FN-IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (457)
Q Consensus       253 ~~-~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  331 (457)
                      +. ..+.+   .++....|.|+.- -+..-+++.++...+|+++|.+..+..    ..++. ..       ..+.+.-+.
T Consensus       817 Laq~~dap---k~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~----~E~kV-cn-------a~~Pna~~R  880 (1034)
T KOG4190|consen  817 LAQMEDAP---KEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWT----CELKV-CN-------APGPNALTR  880 (1034)
T ss_pred             hHhhhcCc---ccCCCceeEeccc-Ccchheeeeccchhhheeeecccccce----eeEEe-cc-------CCCCchhee
Confidence            32 22111   2233344555432 123134444578899999999987543    22221 00       122245688


Q ss_pred             EEEEccCCCeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721          332 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  410 (457)
Q Consensus       332 ~~~~s~~g~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i  410 (457)
                      +++..+.|+.++++ +.|.|.+.|.++ ++.+..++.-+-..               ..++ .|..+.|+....|.++.+
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecdl---------------lqla-apsdq~L~~saldHslaV  943 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPMECDL---------------LQLA-APSDQALAQSALDHSLAV  943 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcccchh---------------hhhc-CchhHHHHhhcccceeEe
Confidence            99999999999988 459999999986 77776665332110               1222 355667777777888888


Q ss_pred             -EecCCC
Q 012721          411 -FSHGVG  416 (457)
Q Consensus       411 -w~~~~~  416 (457)
                       |-...+
T Consensus       944 nWhaldg  950 (1034)
T KOG4190|consen  944 NWHALDG  950 (1034)
T ss_pred             eehhcCC
Confidence             876665

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.87  E-value=8.4e-06  Score=71.34  Aligned_cols=227  Identities=14%  Similarity=0.138  Sum_probs=137.6

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721           37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (457)
Q Consensus        37 ~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (457)
                      ++.|.+ ++.++++--..+.|.-|+..++...                            .+..              ..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----------------------------~~~~--------------~~   41 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE----------------------------VIDL--------------PG   41 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE----------------------------EEES--------------SS
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE----------------------------EEec--------------CC
Confidence            578888 7777777778899999998776531                            1111              22


Q ss_pred             EEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (457)
Q Consensus       116 V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (457)
                      ...+.+. .+++ .|+.+..++ +.++|..+++..........                                     
T Consensus        42 ~~G~~~~-~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~-------------------------------------   81 (246)
T PF08450_consen   42 PNGMAFD-RPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDG-------------------------------------   81 (246)
T ss_dssp             EEEEEEE-CTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETT-------------------------------------
T ss_pred             CceEEEE-ccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCC-------------------------------------
Confidence            5667773 2454 566666655 45669888876655432100                                     


Q ss_pred             eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC--------CeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                         .......+.+++.|+|++.++. ..        +.|..++..  ++....        ...
T Consensus        82 -------------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~--------~~~  132 (246)
T PF08450_consen   82 -------------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV--------ADG  132 (246)
T ss_dssp             -------------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE--------EEE
T ss_pred             -------------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE--------ecC
Confidence                               1133467899999999988774 32        456666665  333222        112


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      -.....|+|+|++..++++-+..+.|..|++..........+.+..          +....+..-.+++..+|++.++.-
T Consensus       133 ~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~g~pDG~~vD~~G~l~va~~  202 (246)
T PF08450_consen  133 LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID----------FPGGPGYPDGLAVDSDGNLWVADW  202 (246)
T ss_dssp             ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-----------SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred             cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE----------cCCCCcCCCcceEcCCCCEEEEEc
Confidence            3557899999999334456678899999998753221111122211          011113477899999998777754


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc-CCCcEEEE
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFAT  401 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s  401 (457)
                      . +.|.++|.+  ++.+..+.......               ++++|. ++.+.|+.
T Consensus       203 ~~~~I~~~~p~--G~~~~~i~~p~~~~---------------t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  203 GGGRIVVFDPD--GKLLREIELPVPRP---------------TNCAFGGPDGKTLYV  242 (246)
T ss_dssp             TTTEEEEEETT--SCEEEEEE-SSSSE---------------EEEEEESTTSSEEEE
T ss_pred             CCCEEEEECCC--ccEEEEEcCCCCCE---------------EEEEEECCCCCEEEE
Confidence            4 999999985  78888777663322               689994 66555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.87  E-value=3.8e-08  Score=80.90  Aligned_cols=184  Identities=13%  Similarity=0.085  Sum_probs=108.1

Q ss_pred             CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-----cCCeEEEEEccCCee
Q 012721          229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQSAL  302 (457)
Q Consensus       229 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-----~dg~i~lwd~~~~~~  302 (457)
                      -++.++++ .||.+.+++.+...+....+      -..|.+ -.+.+....+ +++.++.     .-+..+.|+++..+.
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i------~~~~~~-~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t  171 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRI------PSIHSG-SASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKT  171 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhc------cccccc-ccccceeecc-cEEecCCcceEeeccceeeeccccccc
Confidence            46678888 99999999987311111100      011111 1223333444 4444432     122344555554321


Q ss_pred             eccccccccccccccCcccceeccccceEEEEEccCCCeEE-EEec-CcEEEEeccCCCCceeEeeeccccccccccccC
Q 012721          303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN  380 (457)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (457)
                      .      +..           ..-...|++++-+|..+.++ +|++ |.+-+||.+....+...+..|+..+        
T Consensus       172 ~------~~~-----------~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i--------  226 (319)
T KOG4714|consen  172 L------IPS-----------KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI--------  226 (319)
T ss_pred             c------ccc-----------ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh--------
Confidence            1      111           00013489999999876665 5665 9999999986555666778888776        


Q ss_pred             CCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCceee-------EEecCCCccee-eeeccCCcceeccccccc-
Q 012721          381 NDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGI-------TVEAGKNENRK-PILQAAPRARRSSLSNLT-  450 (457)
Q Consensus       381 ~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~~~-------~~~~~~~~v~~-~~~~p~~~~~~~~~~~~~-  450 (457)
                             ..+.|+| ++..|+++++||.+..||..+. ....       ..--...++++ +...|-.|...-++.+++ 
T Consensus       227 -------~eV~FHpk~p~~Lft~sedGslw~wdas~~-~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV  298 (319)
T KOG4714|consen  227 -------WEVHFHPKNPEHLFTCSEDGSLWHWDASTT-FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV  298 (319)
T ss_pred             -------hheeccCCCchheeEecCCCcEEEEcCCCc-eEEecCccccccccccCCcccceEeeeccccccceeeeeeec
Confidence                   5899998 4789999999999999998743 1111       11112345555 555555666666666655 


Q ss_pred             ccc
Q 012721          451 RGL  453 (457)
Q Consensus       451 ~~~  453 (457)
                      +|+
T Consensus       299 ~g~  301 (319)
T KOG4714|consen  299 LGP  301 (319)
T ss_pred             cCc
Confidence            444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.84  E-value=2.8e-07  Score=76.29  Aligned_cols=176  Identities=13%  Similarity=-0.014  Sum_probs=115.0

Q ss_pred             CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc
Q 012721          229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  307 (457)
Q Consensus       229 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~  307 (457)
                      ...+|+.| .-|...+|...+.....++.       ..|...|+-+.=.-+....+..++.|.++++.++..+...    
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~c-------d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----  151 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQC-------DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----  151 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeee-------cccccchhhhhhhcccccceeeccCCcceeEEEEecCccc----
Confidence            45678888 99999999998444333332       2222222221111111134666788888888887765321    


Q ss_pred             ccccccccccCcccceecccc--ceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCc
Q 012721          308 RILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI  384 (457)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (457)
                      ..               -|..  .+.++.++++++++++.+| ..|..|.+...++-+.........          |.-
T Consensus       152 ~~---------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~----------D~g  206 (344)
T KOG4532|consen  152 FA---------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS----------DHG  206 (344)
T ss_pred             ce---------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC----------CCc
Confidence            11               1112  2788999999999998777 999999997544443332222111          111


Q ss_pred             cccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceee----EEecCCCcceeeeeccCCccee
Q 012721          385 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI----TVEAGKNENRKPILQAAPRARR  443 (457)
Q Consensus       385 ~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~----~~~~~~~~v~~~~~~p~~~~~~  443 (457)
                         ++..|+.....+|++..||++.|||++....+..    +-..|.+.++.+.|+|-|+.-+
T Consensus       207 ---F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL  266 (344)
T KOG4532|consen  207 ---FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL  266 (344)
T ss_pred             ---eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE
Confidence               5789999999999999999999999987644322    2346889999999998776543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.79  E-value=6.4e-06  Score=86.07  Aligned_cols=132  Identities=9%  Similarity=0.105  Sum_probs=80.9

Q ss_pred             CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCC------Cccc--------CCCCceEEEEEecCCccEE
Q 012721          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP------SNMD--------DLTEVITSAEFHPIYCNLL  283 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~------~~~~--------~~~~~i~~v~~~p~~~~~l  283 (457)
                      ....++++|+++.|+++  .++.|++||++..+... .....+      ..+.        ..-.....++++++| .++
T Consensus       741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~-~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LY  818 (1057)
T PLN02919        741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL-LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIY  818 (1057)
T ss_pred             CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE-EEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEE
Confidence            45679999999866555  78999999998433211 110000      0000        011234688999999 888


Q ss_pred             EEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccC
Q 012721          284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM  357 (457)
Q Consensus       284 ~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~  357 (457)
                      ++-..++.|++||..++....    +...-......-....+.-.....++++++|+++++-+. +.|++||+++
T Consensus       819 VADs~N~rIrviD~~tg~v~t----iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        819 VADSYNHKIKKLDPATKRVTT----LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             EEECCCCEEEEEECCCCeEEE----EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            888899999999998765431    110000000000001222235678999999997777654 9999999975

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.78  E-value=1.4e-07  Score=82.44  Aligned_cols=160  Identities=11%  Similarity=0.119  Sum_probs=99.2

Q ss_pred             eEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCe---EEEEEc
Q 012721          222 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF---VRLVDM  297 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~---i~lwd~  297 (457)
                      ..+..++.++++|.+ .+....++++....+..+.++..     .-....+++.|..+. .....+..-|.   +.+|..
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-----~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-----CVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-----ecccCcceeeeeecc-ceEEEEeecCCceeeeeecc
Confidence            345567888999998 88887788777433322221110     011223444444444 33444433333   334433


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeE-eeecccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT-FKIHEHLRPKL  375 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~-~~~~~~~~~~~  375 (457)
                      ..+.                  ...+.||-+.++.++|+||+++|++++ |..|++-.... .-.+.. .-||...+.  
T Consensus       140 ~~~~------------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS--  198 (390)
T KOG3914|consen  140 DSGR------------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVS--  198 (390)
T ss_pred             cccC------------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhee--
Confidence            3221                  112357788999999999999999998 49999887753 233333 346887763  


Q ss_pred             ccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721          376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  423 (457)
Q Consensus       376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~  423 (457)
                                   .++.- ++..|++|+.|++|++||+.+|+ .+.++
T Consensus       199 -------------~isl~-~~~~LlS~sGD~tlr~Wd~~sgk-~L~t~  231 (390)
T KOG3914|consen  199 -------------TISLT-DNYLLLSGSGDKTLRLWDITSGK-LLDTC  231 (390)
T ss_pred             -------------eeeec-cCceeeecCCCCcEEEEecccCC-ccccc
Confidence                         56665 44568999999999999999994 44443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.78  E-value=2e-07  Score=87.36  Aligned_cols=246  Identities=10%  Similarity=0.096  Sum_probs=151.9

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ....+++|  +.+..++++|+.||.+++..+.+...-....                |  +...                
T Consensus        15 vkL~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~----------------g--laa~----------------   58 (1189)
T KOG2041|consen   15 VKLHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKS----------------G--LAAA----------------   58 (1189)
T ss_pred             ceEEEEEE--cccCCeEEeccccceeEEEEccccCCccccc----------------c--cccc----------------
Confidence            67899999  6777799999999999999877642211000                0  0000                


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                                 .+...-++ +.+|...|.-+.|+.+.+.|.++ .+|.|.+|-+-...-+...+      -....+.|.+
T Consensus        59 -----------snLsmNQt-LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi------NnRnKSvV~S  120 (1189)
T KOG2041|consen   59 -----------SNLSMNQT-LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI------NNRNKSVVVS  120 (1189)
T ss_pred             -----------cccchhhh-hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh------hCcCccEEEE
Confidence                       00011122 37999999999999999999999 99999999987332221111      1234577999


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEE
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  351 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~  351 (457)
                      ++|+.+| ..|+....||.|.+=.+.......+   -+++               .-...+.|++|.+.++.+-. |.+.
T Consensus       121 msWn~dG-~kIcIvYeDGavIVGsvdGNRIwgK---eLkg---------------~~l~hv~ws~D~~~~Lf~~ange~h  181 (1189)
T KOG2041|consen  121 MSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGK---ELKG---------------QLLAHVLWSEDLEQALFKKANGETH  181 (1189)
T ss_pred             EEEcCCC-cEEEEEEccCCEEEEeeccceecch---hcch---------------heccceeecccHHHHHhhhcCCcEE
Confidence            9999999 8999999999988776665532211   1111               23557899999888777654 9999


Q ss_pred             EEeccCCC--Cc--eeEeeeccccccccccccCCCCccccceEEE--------cCCCcEEEEEeCCCcEEEEecCCCCce
Q 012721          352 LWDIRMDS--TP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSV--------SGDGLHFATGSYSNLLRIFSHGVGSAG  419 (457)
Q Consensus       352 ~wd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~d~~~l~s~~~dg~i~iw~~~~~~~~  419 (457)
                      +||..-..  +.  -....+.....+     +. ..   +-.+.|        -||...|+.+-..|.+.|-.-.+...+
T Consensus       182 lydnqgnF~~Kl~~~c~Vn~tg~~s~-----~~-~k---ia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  182 LYDNQGNFERKLEKDCEVNGTGIFSN-----FP-TK---IAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             EecccccHHHhhhhceEEeeeeeecC-----CC-cc---ccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            99975210  00  011111100000     00 00   023344        257888998888999888776655333


Q ss_pred             eeEEecCCCcceeeeeccCCccee
Q 012721          420 GITVEAGKNENRKPILQAAPRARR  443 (457)
Q Consensus       420 ~~~~~~~~~~v~~~~~~p~~~~~~  443 (457)
                      ...-.+  -.+....|+|+|.-.+
T Consensus       253 vv~dtg--m~~vgakWnh~G~vLA  274 (1189)
T KOG2041|consen  253 VVVDTG--MKIVGAKWNHNGAVLA  274 (1189)
T ss_pred             eEEecc--cEeecceecCCCcEEE
Confidence            333222  4556666777665443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.76  E-value=6e-08  Score=90.97  Aligned_cols=183  Identities=16%  Similarity=0.200  Sum_probs=125.2

Q ss_pred             eEEEeCC--CCCEEEEe-CCCeEEEEEcCCC-cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          222 NSISNNS--DCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       222 ~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      -...|+|  ...+-+.. ....-.+|++... .+.+..+      +.+|...|+.+.|+|..+..+++++.|-.++.||+
T Consensus        71 ad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~  144 (1081)
T KOG0309|consen   71 ADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFV------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDM  144 (1081)
T ss_pred             cceecccCCCCceeEEecCcchhhhhhhhcCCccceEEE------EecCccceeccccCCCCCcceeeccccccceeeec
Confidence            3455554  23334444 6666778887632 2334433      67899999999999999889999999999999999


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  376 (457)
                      ++....   ...+..             -....+.++|+. ++..+|+...+.|++||.+.++.++..+++|...+    
T Consensus       145 rSp~~p---~ys~~~-------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v----  204 (1081)
T KOG0309|consen  145 RSPHRP---FYSTSS-------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV----  204 (1081)
T ss_pred             cCCCcc---eeeeec-------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee----
Confidence            985321   111111             124567889986 45555555558999999998889999999876654    


Q ss_pred             cccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcc
Q 012721          377 DLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  441 (457)
Q Consensus       377 ~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  441 (457)
                                 ..++|.. -...+.+.+.||+|+.||.....+...-...-..|+..-.+-|-+-.
T Consensus       205 -----------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g  259 (1081)
T KOG0309|consen  205 -----------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEG  259 (1081)
T ss_pred             -----------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCce
Confidence                       3556643 23457788999999999987653333334445667777777766543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.75  E-value=4.7e-05  Score=66.59  Aligned_cols=177  Identities=16%  Similarity=0.134  Sum_probs=105.7

Q ss_pred             eeEEEeC-CCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccC-CCCceEEEEEecCCccEEEEEccC--------C
Q 012721          221 INSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR--------G  290 (457)
Q Consensus       221 v~~~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~d--------g  290 (457)
                      ...+++. +++ .|+.+..+.+.++|.. .++...+....   ... .....+.+++.|+| ++.++....        |
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~~~~~d~~-~g~~~~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g  115 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGGIAVVDPD-TGKVTVLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG  115 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTCEEEEETT-TTEEEEEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred             CceEEEEccCC-EEEEEEcCceEEEecC-CCcEEEEeecc---CCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence            5566776 565 4555533444555887 44444333211   012 34668899999999 777665533        5


Q ss_pred             eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCcee---Ee
Q 012721          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA---TF  365 (457)
Q Consensus       291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~---~~  365 (457)
                      .|..++.. ++..    .....              -...+.++|+|+++.|+.++ . +.|..+++...+..+.   .+
T Consensus       116 ~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~  176 (246)
T PF08450_consen  116 SVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF  176 (246)
T ss_dssp             EEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred             ceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence            57777766 3321    11111              24568999999999887654 3 8899999864333222   12


Q ss_pred             eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721          366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  436 (457)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~  436 (457)
                      .........            .-.+++..+|++.++.-..+.|.+++.+ | +....+..-...+++++|.
T Consensus       177 ~~~~~~~g~------------pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  177 IDFPGGPGY------------PDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             EE-SSSSCE------------EEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEEE
T ss_pred             EEcCCCCcC------------CCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEEE
Confidence            111111000            0368999999988888888999999987 6 5566565555588889995

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=3.8e-06  Score=79.78  Aligned_cols=258  Identities=15%  Similarity=0.171  Sum_probs=159.9

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...-.++.|+|.| +||-|+. ..|.+-|..+.+                           .+..+.-|.          
T Consensus        15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q---------------------------~iqsie~h~----------   55 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQ---------------------------LIQSIELHQ----------   55 (1062)
T ss_pred             cccccccccCccc-eEEEecC-ceEEEEehhhhh---------------------------hhhccccCc----------
Confidence            3346788999877 7777775 468888876544                           455677777          


Q ss_pred             ccCcEEEEEEEecCC----------CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721          112 IEEKINRVRWCAAPN----------GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~----------~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (457)
                        ..|+.|.|.|.+.          .-+|+++...|.|.+||...+....-                             
T Consensus        56 --s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-----------------------------  104 (1062)
T KOG1912|consen   56 --SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-----------------------------  104 (1062)
T ss_pred             --cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh-----------------------------
Confidence              7899999976321          12466677889999999877643211                             


Q ss_pred             ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCE-EEEe-CCCeEEEEEcCCCcceeeee
Q 012721          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCET-FVSA-DDLRINLWNLEISDQCFNIV  256 (457)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~  256 (457)
                                                      +..|..++..++|-+   +.+. |++- ....|.+|+..++++..+  
T Consensus       105 --------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--  150 (1062)
T KOG1912|consen  105 --------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--  150 (1062)
T ss_pred             --------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--
Confidence                                            146677888888854   4433 4443 789999999985544443  


Q ss_pred             ecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccc---ccccccCcc-cceec--c---c
Q 012721          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR---DAAESHGSK-SFFTE--I---I  327 (457)
Q Consensus       257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~--h---~  327 (457)
                            .........|+.+.|-.++.+..-+..|.+.+-+.-..+......+.+.   .|.+.+..+ .+..+  +   .
T Consensus       151 ------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~  224 (1062)
T KOG1912|consen  151 ------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP  224 (1062)
T ss_pred             ------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence                  2233355677899997767777777778777766543322221112221   111100000 00000  0   0


Q ss_pred             c------ceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC--cE
Q 012721          328 A------SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LH  398 (457)
Q Consensus       328 ~------~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~  398 (457)
                      .      ....++|+|.-+.++-... ..+.++|++. ..++.......+..               --+.|-|++  ..
T Consensus       225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~a---------------kfv~vlP~~~rd~  288 (1062)
T KOG1912|consen  225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGA---------------KFVDVLPDPRRDA  288 (1062)
T ss_pred             cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCc---------------ceeEeccCCCcce
Confidence            0      1123566776655554444 8899999986 67777766555533               136676664  57


Q ss_pred             EEEEeCCCcEEEEecCC
Q 012721          399 FATGSYSNLLRIFSHGV  415 (457)
Q Consensus       399 l~s~~~dg~i~iw~~~~  415 (457)
                      |++.-.||.+.+|--+.
T Consensus       289 LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  289 LFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEEecCCeEEEEEeec
Confidence            88999999999998665

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.71  E-value=1.8e-08  Score=96.26  Aligned_cols=199  Identities=15%  Similarity=0.220  Sum_probs=130.8

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|+..-+|++|+-+.+.|+.|+..|.|+++++.+|...                           ....+|.        
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---------------------------~s~ncH~-------- 1143 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---------------------------ESVNCHQ-------- 1143 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCcccc---------------------------ccccccc--------
Confidence            37889999999999999999999999999999988742                           3456777        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                          .+|+.+.=  +.+|..+++.+.  .-...+|++..- .                                      
T Consensus      1144 ----SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~-~-------------------------------------- 1178 (1516)
T KOG1832|consen 1144 ----SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST-G-------------------------------------- 1178 (1516)
T ss_pred             ----cccccccc--cCCcceeeeeccccCchHHHhccccc-c--------------------------------------
Confidence                78888876  778888777542  235678987541 0                                      


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                          .+..     .-..-.++.|+.....-+.| ......+||+.+...+...+..    ..+.
T Consensus      1179 --------------------~~~H-----sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~----~~~~ 1229 (1516)
T KOG1832|consen 1179 --------------------GPRH-----SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD----TVTS 1229 (1516)
T ss_pred             --------------------Cccc-----cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc----chhh
Confidence                                0000     11234567787554444445 5678899999955544432210    1122


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      +..-.+..|+|+. .+++   .||  .+||++..+.+    ..|+..             + .--.-.|+|.|.-++..+
T Consensus      1230 ~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aI----h~FD~f-------------t-~~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAI----HRFDQF-------------T-DYGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred             hhhccccccCCCc-ceEe---eCc--eeeeeccHHHH----hhhhhh-------------e-ecccccccCCCceEEeec
Confidence            2333778899997 6665   466  58999986433    333330             1 112346899998888776


Q ss_pred             cCcEEEEeccCCCCceeEee
Q 012721          347 YMNLKLWDIRMDSTPVATFK  366 (457)
Q Consensus       347 ~~~i~~wd~~~~~~~~~~~~  366 (457)
                      .    |||+++ .+.++...
T Consensus      1286 E----IwD~RT-F~lLh~VP 1300 (1516)
T KOG1832|consen 1286 E----IWDMRT-FKLLHSVP 1300 (1516)
T ss_pred             h----hhhhHH-HHHHhcCc
Confidence            4    899987 55555443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.70  E-value=6.8e-06  Score=69.25  Aligned_cols=36  Identities=22%  Similarity=0.169  Sum_probs=31.8

Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCee
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~  302 (457)
                      ....|..|+.+||| .+||+...+|.|.+|++.+-++
T Consensus       228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence            35679999999999 9999999999999999987543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.68  E-value=9.1e-06  Score=70.63  Aligned_cols=115  Identities=16%  Similarity=0.126  Sum_probs=75.8

Q ss_pred             CCCCCeeEEEeCCCCCEEEEe-CCCe-------EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEE-EEE
Q 012721          216 AHDFNINSISNNSDCETFVSA-DDLR-------INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYS  286 (457)
Q Consensus       216 ~h~~~v~~~~~~~~~~~l~~~-~d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~~  286 (457)
                      .|...|..+++.++|..++.. +.+.       |-+++.   +.....+.+...........+-+|++++++ .++ +++
T Consensus       160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~---g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~ts  235 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR---GGALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTS  235 (305)
T ss_pred             ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC---CCcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEEC
Confidence            467789999999999888776 4432       444443   333444444433445566889999999998 655 555


Q ss_pred             ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEe
Q 012721          287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  354 (457)
Q Consensus       287 ~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd  354 (457)
                      -..+.+.+||..+++..    .....               ..+..++-.+++ ++++...|.+...+
T Consensus       236 PrGg~~~~~d~~tg~~~----~~~~l---------------~D~cGva~~~~~-f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  236 PRGGRVAVWDAATGRLL----GSVPL---------------PDACGVAPTDDG-FLVSSGQGQLIRLS  283 (305)
T ss_pred             CCCCEEEEEECCCCCEe----ecccc---------------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence            57889999999998654    22222               346777777777 66666556544333

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.65  E-value=3e-08  Score=58.72  Aligned_cols=31  Identities=19%  Similarity=0.551  Sum_probs=29.9

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~   60 (457)
                      .|.+.|++|+|+|++.+||+|+.|+.|++||
T Consensus         9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=5.1e-08  Score=93.32  Aligned_cols=191  Identities=13%  Similarity=0.170  Sum_probs=133.1

Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                      ++..-+|++|  +.+.++|+.|+..|.|+++++.+|......                                      
T Consensus      1100 ~~~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~e~s~-------------------------------------- 1139 (1516)
T KOG1832|consen 1100 ETALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSMEESV-------------------------------------- 1139 (1516)
T ss_pred             cccceeeEEe--ecCCceEEeeeccceEEEEEccCccccccc--------------------------------------
Confidence            3378899999  678889999999999999999988644321                                      


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC-eEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                             .+|...|+-+.-+.+|..+.+.  ... ...+|++...+.....+           .
T Consensus      1140 -----------------------ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf-----------~ 1185 (1516)
T KOG1832|consen 1140 -----------------------NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF-----------D 1185 (1516)
T ss_pred             -----------------------cccccccccccccCCcceeeeeccccCchHHHhccccccCccccc-----------c
Confidence                                   6899999999999999888775  333 67899988544443322           2


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecC
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  348 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~  348 (457)
                      .-.++.|+... ..-+.|.......+||++++..+..   .+.. ...         ....-+...|+|+..+++--+  
T Consensus      1186 ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~t---ylt~-~~~---------~~y~~n~a~FsP~D~LIlndG-- 1249 (1516)
T KOG1832|consen 1186 EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQT---YLTD-TVT---------SSYSNNLAHFSPCDTLILNDG-- 1249 (1516)
T ss_pred             ccceeehhhhH-HHHHhcccccceEEEecccCcHHHH---hcCc-chh---------hhhhccccccCCCcceEeeCc--
Confidence            34577887765 5555666667789999999865532   1222 000         112236788999988877433  


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                        .+||.+. .+.++.|......                ..=.|+|.|..++.-++     |||+++-
T Consensus      1250 --vLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1250 --VLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred             --eeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech-----hhhhHHH
Confidence              5899986 4555555433221                24579999999988876     8999876

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=4.2e-07  Score=80.64  Aligned_cols=225  Identities=20%  Similarity=0.181  Sum_probs=141.6

Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                      ++.-|.+.|+.+.-   .-.+++++++.||.++.|.-..-......                                  
T Consensus         4 ksymhrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvEfV----------------------------------   46 (558)
T KOG0882|consen    4 KSYMHRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVEFV----------------------------------   46 (558)
T ss_pred             hhhcccceeeeEee---ehhheEEeeecchhhhhcCCCCccceeeh----------------------------------
Confidence            34445577777765   34569999999999999975442211111                                  


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                             +. +..|...|.+++.+.++.++.+. . |..++++|++ .-.....++     +.-
T Consensus        47 -----------------------Kh-FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE-n~DminmiK-----L~~   96 (558)
T KOG0882|consen   47 -----------------------KH-FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE-NFDMINMIK-----LVD   96 (558)
T ss_pred             -----------------------hh-hHHHHHHHHhhhccccceeEeeccCcccceeEEEee-ccchhhhcc-----ccc
Confidence                                   11 15688888999999999999996 5 9999999998 333332221     111


Q ss_pred             CCCceEEEEEecCCc-cEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          266 LTEVITSAEFHPIYC-NLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~-~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      ..+.+..+ .++... ..|+++. .+|.+.++|-....+..   ..+.            .-|..+|..+.+.+-+..++
T Consensus        97 lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~---~~fk------------klH~sPV~~i~y~qa~Ds~v  160 (558)
T KOG0882|consen   97 LPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD---GYFK------------KLHFSPVKKIRYNQAGDSAV  160 (558)
T ss_pred             CCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcc---ceec------------ccccCceEEEEeecccccee
Confidence            12222211 122210 1444443 67999999977653221   1111            23668999999999999988


Q ss_pred             EEec-CcEEEEeccCC-----CCceeEeeeccccccccccccCCCCcc-ccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          344 SRDY-MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIF-DKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       344 s~~~-~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      +.+. |.|.-|.....     .+....++...       ++|...... ...++.|+|++..+.+-+.|..|+++.+++|
T Consensus       161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT-------dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG  233 (558)
T KOG0882|consen  161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHET-------DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG  233 (558)
T ss_pred             eccccceeEeecCCCcccCccccccccccccc-------hhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence            8875 99999988621     11111222111       112211111 1268999999999999999999999999999


Q ss_pred             CceeeEE
Q 012721          417 SAGGITV  423 (457)
Q Consensus       417 ~~~~~~~  423 (457)
                       +..+.+
T Consensus       234 -klvqei  239 (558)
T KOG0882|consen  234 -KLVQEI  239 (558)
T ss_pred             -hhhhhh
Confidence             444443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.59  E-value=3.9e-05  Score=71.89  Aligned_cols=154  Identities=14%  Similarity=0.050  Sum_probs=85.3

Q ss_pred             CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC--Cc---e-EEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721          231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  303 (457)
Q Consensus       231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~---i-~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~  303 (457)
                      ..++.+ .++.+..+|.+ .++..-.....  ...+..  ..   + .+..+  .+ ..+++++.+|.+..||..+++..
T Consensus       191 ~~v~~~~~~g~v~ald~~-tG~~~W~~~~~--~~~g~~~~~~~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~  264 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQ-TGQPLWEQRVA--LPKGRTELERLVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSGRVL  264 (377)
T ss_pred             CEEEEECCCCEEEEEEcc-CCCEeeeeccc--cCCCCCchhhhhccCCccEE--EC-CEEEEEEcCCEEEEEECCCCcEE
Confidence            356677 88999999987 34332211100  000000  00   0 11112  23 46777888999999999988633


Q ss_pred             ccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCC
Q 012721          304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND  382 (457)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (457)
                            +.. ..            .....+..  .+..++.++ +|.+..+|..+ ++.+-..........         
T Consensus       265 ------W~~-~~------------~~~~~p~~--~~~~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~~---------  313 (377)
T TIGR03300       265 ------WKR-DA------------SSYQGPAV--DDNRLYVTDADGVVVALDRRS-GSELWKNDELKYRQL---------  313 (377)
T ss_pred             ------Eee-cc------------CCccCceE--eCCEEEEECCCCeEEEEECCC-CcEEEccccccCCcc---------
Confidence                  222 00            01111222  345555554 59999999975 665544321111100         


Q ss_pred             CccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCc
Q 012721          383 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  429 (457)
Q Consensus       383 ~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~  429 (457)
                           .....  .+..|++++.+|.|+++|..+| +....++.+..+
T Consensus       314 -----ssp~i--~g~~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~~  352 (377)
T TIGR03300       314 -----TAPAV--VGGYLVVGDFEGYLHWLSREDG-SFVARLKTDGSG  352 (377)
T ss_pred             -----ccCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCc
Confidence                 12222  4568889999999999999999 566666655543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.58  E-value=0.00011  Score=64.11  Aligned_cols=239  Identities=15%  Similarity=0.215  Sum_probs=136.9

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCe-EEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           34 IVSAIEFDK-TGDYLAVGDRGGR-VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        34 ~V~~~~~s~-~~~~latg~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ....++.+| .+..+|.+-.-|+ ..+||..+++..+.       +            ....-..|.||-          
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-------~------------~a~~gRHFyGHg----------   56 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-------L------------WAPPGRHFYGHG----------   56 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-------E------------cCCCCCEEecCE----------
Confidence            445678888 5667777776665 67889888875300       0            001113455665          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEee-----CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          112 IEEKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s-----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                              .|  +++|.+|++.-     ..|.|-|||...+ ...+-++                               
T Consensus        57 --------~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~-------------------------------   94 (305)
T PF07433_consen   57 --------VF--SPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEF-------------------------------   94 (305)
T ss_pred             --------EE--cCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEe-------------------------------
Confidence                    56  79999999863     4588999998832 2222221                               


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCC-------------------CeEEEEEcC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD-------------------LRINLWNLE  247 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d-------------------~~i~iwd~~  247 (457)
                                                  ..|.-.-..+.+.|||+.|+.++.                   -.+...|..
T Consensus        95 ----------------------------~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~  146 (305)
T PF07433_consen   95 ----------------------------PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR  146 (305)
T ss_pred             ----------------------------cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence                                        223333445678888877776422                   223344444


Q ss_pred             CCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC-------eEEEEEccCCeeeccccccccccccccCcc
Q 012721          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAESHGSK  320 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  320 (457)
                       .+..+..+.+.   -..|...|..+++.++| ..++..-..|       .|-+++....  .    ..+..      ..
T Consensus       147 -sG~ll~q~~Lp---~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~----~~~~~------p~  209 (305)
T PF07433_consen  147 -SGALLEQVELP---PDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L----RLLPA------PE  209 (305)
T ss_pred             -CCceeeeeecC---ccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c----eeccC------Ch
Confidence             34444332211   14477789999999998 5444332222       1333332221  0    11111      00


Q ss_pred             cceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcE
Q 012721          321 SFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  398 (457)
Q Consensus       321 ~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~  398 (457)
                      .........+-+|++++++.++++.+ - +.+.+||..+ ++.+......+.                 ..++-.+++ +
T Consensus       210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~-----------------cGva~~~~~-f  270 (305)
T PF07433_consen  210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDA-----------------CGVAPTDDG-F  270 (305)
T ss_pred             HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCce-----------------eeeeecCCc-e
Confidence            01122346899999999999998766 3 9999999986 777766554432                 245555555 6


Q ss_pred             EEEEeCCCcE
Q 012721          399 FATGSYSNLL  408 (457)
Q Consensus       399 l~s~~~dg~i  408 (457)
                      +++.+. |.+
T Consensus       271 ~~ssG~-G~~  279 (305)
T PF07433_consen  271 LVSSGQ-GQL  279 (305)
T ss_pred             EEeCCC-ccE
Confidence            665554 544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.57  E-value=5.7e-05  Score=65.74  Aligned_cols=156  Identities=13%  Similarity=0.032  Sum_probs=80.3

Q ss_pred             CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (457)
Q Consensus       230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~  308 (457)
                      +..++.+ .++.|+.+|..+.....+......   .... ..........+ ..++++..++.|..+|+++++..-.   
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~---  147 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS---PPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWK---  147 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SS---CTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEE---
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccc---cccc-cccccCceEec-CEEEEEeccCcEEEEecCCCcEEEE---
Confidence            3444444 788999999884444443221110   1111 11222222335 6788888899999999999975421   


Q ss_pred             cccccccccCcccceeccccceEEEEEccCCCeEEEEecCc-EEEEeccCCCCceeEeeeccccccccccccCCCCcccc
Q 012721          309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  387 (457)
Q Consensus       309 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  387 (457)
                       ...  ..+.....+. ....+..-....++..+++..++. +.+ |+.+ ++.+-... ....                
T Consensus       148 -~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~w~~~-~~~~----------------  204 (238)
T PF13360_consen  148 -YPV--GEPRGSSPIS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKLWSKP-ISGI----------------  204 (238)
T ss_dssp             -EES--STT-SS--EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEEEEEC-SS-E----------------
T ss_pred             -eec--CCCCCCccee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEEEEec-CCCc----------------
Confidence             111  0000000000 011122222233454444444564 555 9876 55332222 1111                


Q ss_pred             ceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721          388 FECSVSGDGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       388 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                       ......++..|+.++.++.|..||+.+|+
T Consensus       205 -~~~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  205 -YSLPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             -CECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             -cCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence             12245677888888899999999999993

...

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.55  E-value=0.00011  Score=68.53  Aligned_cols=146  Identities=12%  Similarity=0.085  Sum_probs=89.2

Q ss_pred             eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCC
Q 012721          138 TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH  217 (457)
Q Consensus       138 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h  217 (457)
                      .+.++.+..++...........+..++.|+..++..+.+..   ..+...+.  ..-...+|+.... ..+++.+.....
T Consensus       185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE---~s~s~~g~--~~~d~ciYE~~r~-klqrvsvtsipL  258 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVE---QSISVKGE--PSADSCIYECSRN-KLQRVSVTSIPL  258 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEE---EecCCCCC--ceeEEEEEEeecC-ceeEEEEEEEec
Confidence            34455555544444433344444455555544443332221   01111111  1113344555432 233444443567


Q ss_pred             CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      ...|.|++++|+.+.++.| .||+|.+||.. .+...         +....-.++.++|+|+| .++++|+..|.+.+||
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~-~~~t~---------~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTT-RGVTL---------LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFD  327 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcC-CCeee---------eeeecccceEEEEcCCC-cEEEEEcCCceEEEEE
Confidence            7889999999999999999 99999999987 33222         12233557899999999 9999999999999999


Q ss_pred             ccCC
Q 012721          297 MRQS  300 (457)
Q Consensus       297 ~~~~  300 (457)
                      +.-.
T Consensus       328 ~ALs  331 (545)
T PF11768_consen  328 MALS  331 (545)
T ss_pred             eecC
Confidence            8764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.54  E-value=3.7e-07  Score=53.93  Aligned_cols=38  Identities=29%  Similarity=0.799  Sum_probs=34.4

Q ss_pred             ceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEE
Q 012721           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK  143 (457)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~  143 (457)
                      +++.++++|.            +.|++++|  +|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~------------~~i~~i~~--~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHS------------SSINSIAW--SPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSS------------SSEEEEEE--ETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCC------------CcEEEEEE--ecccccceeeCCCCEEEEEC
Confidence            3677899999            88999999  57899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=6.8e-05  Score=68.83  Aligned_cols=277  Identities=19%  Similarity=0.193  Sum_probs=160.7

Q ss_pred             EEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (457)
Q Consensus       116 V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (457)
                      =+-+.|  ||-|.+|++--.-| |.+|--.+-.....   -.++.|.-+.|++.+..++.-...+ .....+  -..+..
T Consensus       213 etyv~w--SP~GTYL~t~Hk~G-I~lWGG~~f~r~~R---F~Hp~Vq~idfSP~EkYLVT~s~~p-~~~~~~--d~e~~~  283 (698)
T KOG2314|consen  213 ETYVRW--SPKGTYLVTFHKQG-IALWGGESFDRIQR---FYHPGVQFIDFSPNEKYLVTYSPEP-IIVEED--DNEGQQ  283 (698)
T ss_pred             eeeEEe--cCCceEEEEEeccc-eeeecCccHHHHHh---ccCCCceeeecCCccceEEEecCCc-cccCcc--cCCCce
Confidence            356889  78999999988777 78997554322211   1233455666666655544322211 000000  122348


Q ss_pred             eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE
Q 012721          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  275 (457)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  275 (457)
                      +.+||+.+-...+...++ .+....-.-+.||.|++++|--...+|.||+.. .   ...++.++.    .-..|...+|
T Consensus       284 l~IWDI~tG~lkrsF~~~-~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtp-s---f~lld~Ksl----ki~gIr~Fsw  354 (698)
T KOG2314|consen  284 LIIWDIATGLLKRSFPVI-KSPYLKWPIFRWSHDDKYFARMTGNSISIYETP-S---FMLLDKKSL----KISGIRDFSW  354 (698)
T ss_pred             EEEEEccccchhcceecc-CCCccccceEEeccCCceeEEeccceEEEEecC-c---eeeeccccc----CCccccCccc
Confidence            999999753322222221 122222235689999999887655889999876 2   333333321    2256788899


Q ss_pred             ecCCccEEEEEccC-----CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec---
Q 012721          276 HPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---  347 (457)
Q Consensus       276 ~p~~~~~l~~~~~d-----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---  347 (457)
                      +|.+ ++||.-...     ..+.+-.+.+++.+    +....             |+-.=..+.|-.+|.||+.--+   
T Consensus       355 sP~~-~llAYwtpe~~~~parvtL~evPs~~~i----Rt~nl-------------fnVsDckLhWQk~gdyLcvkvdR~t  416 (698)
T KOG2314|consen  355 SPTS-NLLAYWTPETNNIPARVTLMEVPSKREI----RTKNL-------------FNVSDCKLHWQKSGDYLCVKVDRHT  416 (698)
T ss_pred             CCCc-ceEEEEcccccCCcceEEEEecCcccee----eeccc-------------eeeeccEEEeccCCcEEEEEEEeec
Confidence            9998 888865421     24555555554332    22111             1112235677788999985322   


Q ss_pred             --------CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC---CCcEEEEecC-C
Q 012721          348 --------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHG-V  415 (457)
Q Consensus       348 --------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~---dg~i~iw~~~-~  415 (457)
                              ..+.|+.++....++..+...+..                ...+|-|.|..+++-+.   ..++.+|.+. +
T Consensus       417 K~~~~g~f~n~eIfrireKdIpve~velke~v----------------i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~  480 (698)
T KOG2314|consen  417 KSKVKGQFSNLEIFRIREKDIPVEVVELKESV----------------IAFAWEPHGDKFAVISGNTVKNTVSFYAVETN  480 (698)
T ss_pred             cccccceEeeEEEEEeeccCCCceeeecchhe----------------eeeeeccCCCeEEEEEccccccceeEEEeecC
Confidence                    234566665333344444433332                58999999987765443   3579999988 4


Q ss_pred             CCceeeEEecCCCcceeeeeccCCcceec
Q 012721          416 GSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       416 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ..+...+..-.....+.+.|+|.|+....
T Consensus       481 ~~~~~lVk~~dk~~~N~vfwsPkG~fvvv  509 (698)
T KOG2314|consen  481 IKKPSLVKELDKKFANTVFWSPKGRFVVV  509 (698)
T ss_pred             CCchhhhhhhcccccceEEEcCCCcEEEE
Confidence            43444444444577899999999988776

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=9.9e-06  Score=77.42  Aligned_cols=192  Identities=16%  Similarity=0.191  Sum_probs=126.6

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      +...+.++|++++  ++.||-|.-+|.|++++......                             +...|.       
T Consensus        36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-----------------------------~~~~~s-------   77 (846)
T KOG2066|consen   36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-----------------------------TNFDHS-------   77 (846)
T ss_pred             HHhhhHHHHHHhh--cceeeeccccceEEEEecCCccc-----------------------------cccccc-------
Confidence            4467899999999  88999999999999999765421                             222333       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..        ..+|.++++|+.||.|.+-.+-+.+.....                                   
T Consensus        78 -----~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-----------------------------------  109 (846)
T KOG2066|consen   78 -----SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQY-----------------------------------  109 (846)
T ss_pred             -----cc--------ccCCceEEEecCCCcEEEeeccCCccceeE-----------------------------------
Confidence                 11        357999999999999999887776544332                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-----CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCc
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                                                 ....++.+++++|+     .+.+++| .-| +.++.-+--+....+      .
T Consensus       110 ---------------------------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~  155 (846)
T KOG2066|consen  110 ---------------------------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------V  155 (846)
T ss_pred             ---------------------------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------e
Confidence                                       22347889999987     5677787 666 888765422222211      1


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l  342 (457)
                      +....++|.++.|.-   ++||-++.+| |++||+.+++....    .+. +. +..+     ....-..+.|.++.+ |
T Consensus       156 l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l~~----i~~-p~-~~~R-----~e~fpphl~W~~~~~-L  219 (846)
T KOG2066|consen  156 LSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQRLTN----IPP-PS-QSVR-----PELFPPHLHWQDEDR-L  219 (846)
T ss_pred             eecCccceEEEEecC---cEEEEecCCC-cEEEeccccceeec----cCC-CC-CCCC-----cccCCCceEecCCCe-E
Confidence            455668999999974   6788888877 79999998764421    111 00 0000     011234577877654 4


Q ss_pred             EEEecCcEEEEecc
Q 012721          343 LSRDYMNLKLWDIR  356 (457)
Q Consensus       343 ~s~~~~~i~~wd~~  356 (457)
                      +.|-..+|++..++
T Consensus       220 VIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  220 VIGWGDSVKICSIK  233 (846)
T ss_pred             EEecCCeEEEEEEe
Confidence            44544577777776

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=9.1e-07  Score=75.91  Aligned_cols=130  Identities=12%  Similarity=0.112  Sum_probs=90.1

Q ss_pred             CCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC----cceeeeeecCCCcccCCCCceEEEEEec-CCccEEEEEccCC
Q 012721          217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRG  290 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg  290 (457)
                      ....|.++.|...++++..| .+|.|..+|++..    +.+..        .--|...|+++..-. ++ ++|++.+.+|
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--------rlyh~Ssvtslq~Lq~s~-q~LmaS~M~g  321 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--------RLYHDSSVTSLQILQFSQ-QKLMASDMTG  321 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE--------EEEcCcchhhhhhhcccc-ceEeeccCcC
Confidence            44578888898888899999 9999999999854    22222        223788899998776 55 8899999999


Q ss_pred             eEEEEEccCCeeeccccccccccccccCcccceeccccceE--EEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeee
Q 012721          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS--DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI  367 (457)
Q Consensus       291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~  367 (457)
                      +|++||++.-+.. ..+..+++             |...-.  -+...+....+++++ |...++|.++. +.++.++..
T Consensus       322 kikLyD~R~~K~~-~~V~qYeG-------------HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf  386 (425)
T KOG2695|consen  322 KIKLYDLRATKCK-KSVMQYEG-------------HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPF  386 (425)
T ss_pred             ceeEeeehhhhcc-cceeeeec-------------ccccccccccccccccceEEEccCeeEEEEEeccc-CceeeccCC
Confidence            9999999976531 12234444             322211  223345566666654 59999999985 888877765


Q ss_pred             ccc
Q 012721          368 HEH  370 (457)
Q Consensus       368 ~~~  370 (457)
                      ...
T Consensus       387 ~~s  389 (425)
T KOG2695|consen  387 PYS  389 (425)
T ss_pred             CCc
Confidence            443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=6.3e-05  Score=72.67  Aligned_cols=131  Identities=14%  Similarity=0.109  Sum_probs=85.9

Q ss_pred             CCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC-cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721          217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l  294 (457)
                      ...++.+++.+.+-+.+|+| .||.|..+.=+.. .+..+.     .-.....++|+.+++..++ ..++.......|.+
T Consensus       124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-----~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~  197 (933)
T KOG2114|consen  124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-----DYSHRGKEPITGLALRSDG-KSVLFVATTEQVML  197 (933)
T ss_pred             CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-----eeeccCCCCceeeEEecCC-ceeEEEEecceeEE
Confidence            45678899999999999999 9999999853311 111111     0122345889999999998 55444555667999


Q ss_pred             EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEee-eccc
Q 012721          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEH  370 (457)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~-~~~~  370 (457)
                      |.+.... .  ..++             +..|...+.|..+++...-++++....+.+|+... .++...+. ++..
T Consensus       198 y~l~gr~-p--~~~~-------------ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  198 YSLSGRT-P--SLKV-------------LDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFEVGEKK  257 (933)
T ss_pred             EEecCCC-c--ceee-------------eccCCccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeecCCCeE
Confidence            9988432 0  0111             23456788999988765546665557899999863 45555555 4443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.42  E-value=7.8e-05  Score=70.55  Aligned_cols=123  Identities=16%  Similarity=0.231  Sum_probs=86.4

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      |...|.=-+++..+++++.|+..|.+++|+-.+++..                          +....+-          
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--------------------------~~~~~~~----------   75 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--------------------------KLKNEGA----------   75 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhh--------------------------cccccCc----------
Confidence            5666666777778999999999999999998877652                          1112221          


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ..+.++.-. +++..++|.|+..|.|.++-++.+......-...                                 
T Consensus        76 ---~~~~~~~~v-s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~---------------------------------  118 (726)
T KOG3621|consen   76 ---TGITCVRSV-SSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP---------------------------------  118 (726)
T ss_pred             ---cceEEEEEe-cchhHhhhhhcCCceEEeehhhccCCCcceeecc---------------------------------
Confidence               234444333 6777788888999999998877643221111000                                 


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~  248 (457)
                                            ....|...|++++|++|+..+++| ..|.|.+-.++.
T Consensus       119 ----------------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  119 ----------------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ----------------------ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                                  004588899999999999999999 889988877763

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.38  E-value=0.00021  Score=66.92  Aligned_cols=153  Identities=10%  Similarity=0.049  Sum_probs=77.4

Q ss_pred             CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (457)
Q Consensus       230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~  308 (457)
                      +..++.+ .++.|+.||.+ .++.+-........+. .... .+.... +  ..++.+..+|.+..+|.++++..     
T Consensus       145 ~~~v~v~~~~g~l~a~d~~-tG~~~W~~~~~~~~~~-~~~~-~sp~~~-~--~~v~~~~~~g~v~ald~~tG~~~-----  213 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAA-TGERLWTYSRVTPALT-LRGS-ASPVIA-D--GGVLVGFAGGKLVALDLQTGQPL-----  213 (377)
T ss_pred             CCEEEEECCCCeEEEEEcC-CCceeeEEccCCCcee-ecCC-CCCEEE-C--CEEEEECCCCEEEEEEccCCCEe-----
Confidence            3455556 89999999998 4443322211100000 0000 111111 2  35677888899999999888643     


Q ss_pred             cccccccccCcccceeccccce-EEEEEccCCCeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccc
Q 012721          309 ILRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD  386 (457)
Q Consensus       309 ~~~~~~~~~~~~~~~~~h~~~v-~~~~~s~~g~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                       +......+....... ....+ ....+  .+..++.+ .+|.++.||..+ ++.+-...... .               
T Consensus       214 -W~~~~~~~~g~~~~~-~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~~~-~---------------  272 (377)
T TIGR03300       214 -WEQRVALPKGRTELE-RLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRS-GRVLWKRDASS-Y---------------  272 (377)
T ss_pred             -eeeccccCCCCCchh-hhhccCCccEE--ECCEEEEEEcCCEEEEEECCC-CcEEEeeccCC-c---------------
Confidence             211000000000000 00000 11111  13345544 459999999975 66554443111 1               


Q ss_pred             cceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721          387 KFECSVSGDGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       387 v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                       ....  .++..|+.++.||.++.+|..+|+
T Consensus       273 -~~p~--~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       273 -QGPA--VDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             -cCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence             1222  245678888899999999999884

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.34  E-value=0.00021  Score=71.82  Aligned_cols=115  Identities=14%  Similarity=0.114  Sum_probs=73.1

Q ss_pred             eEEEEEecCCccEEEEEc----cC-CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          270 ITSAEFHPIYCNLLAYSS----SR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~----~d-g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      =++|+|.-|| .++|+..    .+ ..|++||.. +.+.......                 .+--.+++|-|.|..+++
T Consensus       198 ~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~-----------------~~l~~~LsWkPsgs~iA~  258 (1265)
T KOG1920|consen  198 KTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV-----------------EGLQHSLSWKPSGSLIAA  258 (1265)
T ss_pred             CceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcc-----------------cccccceeecCCCCeEee
Confidence            3578999999 9998843    23 789999977 4332100000                 123467999999999997


Q ss_pred             E----ecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE---EeCCCcEEEEecCCC
Q 012721          345 R----DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT---GSYSNLLRIFSHGVG  416 (457)
Q Consensus       345 ~----~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s---~~~dg~i~iw~~~~~  416 (457)
                      -    +++.|.++.-+  |-.-..+......           ....+..++|+.++..||.   ......|++|-+.+-
T Consensus       259 iq~~~sd~~IvffErN--GL~hg~f~l~~p~-----------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  259 IQCKTSDSDIVFFERN--GLRHGEFVLPFPL-----------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecCCCCcEEEEecC--CccccccccCCcc-----------cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            3    34789998764  3222222211110           0001268999999999987   445556999998775

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.30  E-value=2.5e-07  Score=85.75  Aligned_cols=166  Identities=16%  Similarity=0.158  Sum_probs=108.7

Q ss_pred             cCCCCCeeEEEeCC-CCCEEEEe-----CCCeEEEEEcCCCc-ceeeeeecCCCcccC-CCCceEEEEEecCCccEEEEE
Q 012721          215 HAHDFNINSISNNS-DCETFVSA-----DDLRINLWNLEISD-QCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYS  286 (457)
Q Consensus       215 ~~h~~~v~~~~~~~-~~~~l~~~-----~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~  286 (457)
                      .++...+++++|++ |.+.||+|     .|..+.|||+.+.- .+...     ..+.+ ......+++|..+. +++++|
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-----~~fs~~~l~gqns~cwlrd~-klvlaG  172 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-----PLFSSSTLDGQNSVCWLRDT-KLVLAG  172 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc-----cccccccccCccccccccCc-chhhcc
Confidence            57778899999988 67888887     36789999998321 11111     11222 33445688999887 899999


Q ss_pred             ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEecCcEEEEec-cCCCCceeE
Q 012721          287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDI-RMDSTPVAT  364 (457)
Q Consensus       287 ~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~~~i~~wd~-~~~~~~~~~  364 (457)
                      .....++++|++......   ..+.               +..+..+..+| .+.|+++..+|.|-+||. +.-..++..
T Consensus       173 m~sr~~~ifdlRqs~~~~---~svn---------------Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~  234 (783)
T KOG1008|consen  173 MTSRSVHIFDLRQSLDSV---SSVN---------------TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQI  234 (783)
T ss_pred             cccchhhhhhhhhhhhhh---hhhh---------------hhhcccceecCCCCCceeccccCceeeccchhhhccHHHH
Confidence            999999999999642110   1111               13577788888 788999888999999994 322344444


Q ss_pred             eeeccccccccccccCCCCccccceEEEcCCCc-EEEEEe-CCCcEEEEecCC
Q 012721          365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGV  415 (457)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~-~dg~i~iw~~~~  415 (457)
                      +...++..+           ..++.++|+|... .+++.. ..++|+++++..
T Consensus       235 i~~~~N~~~-----------~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  235 ILRNENKKP-----------KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             HhhCCCCcc-----------cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            433333211           0126899999633 344444 457899999864

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.00014  Score=69.87  Aligned_cols=149  Identities=16%  Similarity=0.136  Sum_probs=96.2

Q ss_pred             CCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC----CccEEEEEccCCeEEEEEccCCe
Q 012721          227 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCNLLAYSSSRGFVRLVDMRQSA  301 (457)
Q Consensus       227 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~----~~~~l~~~~~dg~i~lwd~~~~~  301 (457)
                      .-+|+++++| .||.|.|..+-+.. ....++        -..++.+|+++|+    .++.+++|+.-| +.++.-+--+
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~-~~~~~d--------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg  149 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDD-EITQYD--------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG  149 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCc-cceeEe--------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence            5589999999 99999999888443 333322        2367899999998    236899999888 7776533211


Q ss_pred             eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCC
Q 012721          302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN  381 (457)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (457)
                      ..   ..+            ....-.++|.++.|.  |.+||-++|-.|++||... .+.+..+......+.  .+.+  
T Consensus       150 nk---~~v------------~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R--~e~f--  207 (846)
T KOG2066|consen  150 NK---DSV------------VLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVR--PELF--  207 (846)
T ss_pred             Cc---cce------------eeecCccceEEEEec--CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCC--cccC--
Confidence            00   011            112235789999998  8899999998899999976 555544443322110  0000  


Q ss_pred             CCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          382 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       382 ~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                           ...+.|.++.+.+ .|-. -+|+|..++
T Consensus       208 -----pphl~W~~~~~LV-IGW~-d~v~i~~I~  233 (846)
T KOG2066|consen  208 -----PPHLHWQDEDRLV-IGWG-DSVKICSIK  233 (846)
T ss_pred             -----CCceEecCCCeEE-EecC-CeEEEEEEe
Confidence                 0368888776544 4443 368888887

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.24  E-value=4.8e-05  Score=71.09  Aligned_cols=183  Identities=16%  Similarity=0.127  Sum_probs=109.9

Q ss_pred             CCCeeEEEeCCCCCEEEEe--CC---CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCe-
Q 012721          218 DFNINSISNNSDCETFVSA--DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF-  291 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~--~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~-  291 (457)
                      ...+..-+|+|++..++.-  ..   ..+.+++++ .++...+.     ++.++   -...+|+|||..++++...||. 
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~-~g~~~~i~-----~~~g~---~~~P~fspDG~~l~f~~~rdg~~  262 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLN-TGKRPVIL-----NFNGN---NGAPAFSPDGSKLAFSSSRDGSP  262 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEecc-CCccceee-----ccCCc---cCCccCCCCCCEEEEEECCCCCc
Confidence            4456677899999887653  22   359999998 44444432     12333   3456899999556666667776 


Q ss_pred             -EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeec
Q 012721          292 -VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH  368 (457)
Q Consensus       292 -i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~  368 (457)
                       |.++|+.++...    ++...              .+.-+.-.|+|||++|+-.+|  |.-.||-...++.....+...
T Consensus       263 ~iy~~dl~~~~~~----~Lt~~--------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~  324 (425)
T COG0823         263 DIYLMDLDGKNLP----RLTNG--------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS  324 (425)
T ss_pred             cEEEEcCCCCcce----ecccC--------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence             555566665421    21111              122336789999999997665  554555444335544555443


Q ss_pred             cccccccccccCCCCccccceEEEcCCCcEEEEEeCC-Cc--EEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NL--LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~--i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ...-               ..-.|+|||++|+..+.. |.  |.+.++.++..  ...-.+........+.|++....+
T Consensus       325 ~~~~---------------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~~~~e~ps~~~ng~~i~~  386 (425)
T COG0823         325 GGGN---------------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK--IRILTSTYLNESPSWAPNGRMIMF  386 (425)
T ss_pred             CCCC---------------cCccCCCCCCEEEEEeccCCceeeEEeccCCCCc--EEEccccccCCCCCcCCCCceEEE
Confidence            3321               257899999999877753 44  77777777743  223334444555666666665554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.15  E-value=6.7e-05  Score=72.93  Aligned_cols=148  Identities=13%  Similarity=0.139  Sum_probs=98.5

Q ss_pred             eeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc---------CC
Q 012721          221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RG  290 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---------dg  290 (457)
                      |.-++.  +++++.+| ..|+|.+-|.+ ..+.+..       +..|++.|.++.  -.| ++|++++.         |.
T Consensus       180 v~imR~--Nnr~lf~G~t~G~V~LrD~~-s~~~iht-------~~aHs~siSDfD--v~G-NlLitCG~S~R~~~l~~D~  246 (1118)
T KOG1275|consen  180 VTIMRY--NNRNLFCGDTRGTVFLRDPN-SFETIHT-------FDAHSGSISDFD--VQG-NLLITCGYSMRRYNLAMDP  246 (1118)
T ss_pred             eEEEEe--cCcEEEeecccceEEeecCC-cCceeee-------eeccccceeeee--ccC-CeEEEeecccccccccccc
Confidence            444444  68899999 99999999998 5555544       678999887655  456 78888874         45


Q ss_pred             eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC--CCeEEEEecCcEEEEeccCCCCc-eeEeee
Q 012721          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKLWDIRMDSTP-VATFKI  367 (457)
Q Consensus       291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~~~i~~wd~~~~~~~-~~~~~~  367 (457)
                      -|+|||+|+.+... .+....                 .-.-+.|.|.  .+..++.+.|...+-|....+.+ ...+..
T Consensus       247 FvkVYDLRmmral~-PI~~~~-----------------~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v  308 (1118)
T KOG1275|consen  247 FVKVYDLRMMRALS-PIQFPY-----------------GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV  308 (1118)
T ss_pred             hhhhhhhhhhhccC-Cccccc-----------------CchhhhhcccccceEEEEecccceeeccccccCCCccceeEE
Confidence            58999999875431 111111                 1134566664  33334444589999884332333 334433


Q ss_pred             ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      +.....             +..+++|++++.||.|..+|.|.+|.
T Consensus       309 ~p~~s~-------------i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  309 NPNGSG-------------ISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccCCCc-------------ceeEEecCCCceEEEecccCcEeeec
Confidence            332210             15899999999999999999999998

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.00068  Score=65.86  Aligned_cols=178  Identities=15%  Similarity=0.137  Sum_probs=100.1

Q ss_pred             eeEEEeCCCCCEEEE-e-CCC----eEEEEEcCCC-----cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC
Q 012721          221 INSISNNSDCETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  289 (457)
Q Consensus       221 v~~~~~~~~~~~l~~-~-~d~----~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d  289 (457)
                      |..+-...+..+|++ | +++    .|++|+++..     .++.....+-+........++.+++.+.+- +.+|+|-.+
T Consensus        68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~n  146 (933)
T KOG2114|consen   68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTN  146 (933)
T ss_pred             hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecC
Confidence            333333334456665 4 444    6999999743     223311111111123345778899999987 999999999


Q ss_pred             CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe-EEEEecCcEEEEeccCCCCceeE-eee
Q 012721          290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDSTPVAT-FKI  367 (457)
Q Consensus       290 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~~~i~~wd~~~~~~~~~~-~~~  367 (457)
                      |.|..+.=.--  .+...+.--           ......+|+.+++..+++. +.+++-..|.+|.+.. ..+... +..
T Consensus       147 G~V~~~~GDi~--RDrgsr~~~-----------~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~  212 (933)
T KOG2114|consen  147 GLVICYKGDIL--RDRGSRQDY-----------SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDN  212 (933)
T ss_pred             cEEEEEcCcch--hccccceee-----------eccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeecc
Confidence            99988742211  011111111           1112478999999998877 4455557899999962 233333 443


Q ss_pred             ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe-cCCCcc
Q 012721          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNEN  430 (457)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~~~~v  430 (457)
                      |....               .+.++++....+++++. ..+.+|+.... ..-..+. +|....
T Consensus       213 ~G~~l---------------nCss~~~~t~qfIca~~-e~l~fY~sd~~-~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  213 NGISL---------------NCSSFSDGTYQFICAGS-EFLYFYDSDGR-GPCFAFEVGEKKEM  259 (933)
T ss_pred             CCccc---------------eeeecCCCCccEEEecC-ceEEEEcCCCc-ceeeeecCCCeEEE
Confidence            43322               35566655443544443 46888987754 3334444 555433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.10  E-value=0.00043  Score=69.75  Aligned_cols=73  Identities=11%  Similarity=0.084  Sum_probs=51.4

Q ss_pred             eEEEeCCCCCEEEEe----CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEE---EccCCeEEE
Q 012721          222 NSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY---SSSRGFVRL  294 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~---~~~dg~i~l  294 (457)
                      .+++|-|.|..+++-    .|+.|.+|..+  +.....+.++   +......+..++|+.++ ..|++   ......|++
T Consensus       245 ~~LsWkPsgs~iA~iq~~~sd~~IvffErN--GL~hg~f~l~---~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~l  318 (1265)
T KOG1920|consen  245 HSLSWKPSGSLIAAIQCKTSDSDIVFFERN--GLRHGEFVLP---FPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQL  318 (1265)
T ss_pred             cceeecCCCCeEeeeeecCCCCcEEEEecC--CccccccccC---CcccccchheeeecCCC-CceeeeecccccceEEE
Confidence            478999999999882    56789999876  4333333222   22233348999999998 88887   445556999


Q ss_pred             EEccCC
Q 012721          295 VDMRQS  300 (457)
Q Consensus       295 wd~~~~  300 (457)
                      |-+.+-
T Consensus       319 wt~~Ny  324 (1265)
T KOG1920|consen  319 WTTGNY  324 (1265)
T ss_pred             EEecCe
Confidence            988764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=0.00059  Score=60.41  Aligned_cols=74  Identities=14%  Similarity=0.137  Sum_probs=55.9

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|.+++|+|...| ++..++.+..|++.|+++.......                                        
T Consensus       194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy----------------------------------------  232 (463)
T KOG1645|consen  194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSY----------------------------------------  232 (463)
T ss_pred             hhhhhhccCccccc-eeeeeccCceEEEEecccceeeehe----------------------------------------
Confidence            67999999654334 7888999999999999886554332                                        


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCc
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISD  250 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~  250 (457)
                                           ..+ ..+++++|.-| ..+|++| .+|.|.+||++...
T Consensus       233 ---------------------~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  233 ---------------------IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ---------------------ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence                                 223 57889999765 4566777 99999999998543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.06  E-value=0.00013  Score=70.99  Aligned_cols=152  Identities=17%  Similarity=0.196  Sum_probs=103.2

Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      .|.-++.    ++..+.+|...|+|.+-|.++.+....+                                         
T Consensus       179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~-----------------------------------------  213 (1118)
T KOG1275|consen  179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTF-----------------------------------------  213 (1118)
T ss_pred             ceEEEEe----cCcEEEeecccceEEeecCCcCceeeee-----------------------------------------
Confidence            3555554    5678888999999999888776544332                                         


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C---------CCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                          ..|.+.|..+..  .|+.|++| .         |.-|++||++. -+.+..+       .
T Consensus       214 --------------------~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI-------~  263 (1118)
T KOG1275|consen  214 --------------------DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPI-------Q  263 (1118)
T ss_pred             --------------------eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh-hhccCCc-------c
Confidence                                578888887666  57788875 2         55689999993 3333221       1


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      -+.+ ..-+.|+|.-+..+++++..|...+-|..+-....  ..++..           ..-.+.+..+.++++|+.||.
T Consensus       264 ~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--~~~~~v-----------~p~~s~i~~fDiSsn~~alaf  329 (1118)
T KOG1275|consen  264 FPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP--AGVKMV-----------NPNGSGISAFDISSNGDALAF  329 (1118)
T ss_pred             cccC-chhhhhcccccceEEEEecccceeeccccccCCCc--cceeEE-----------ccCCCcceeEEecCCCceEEE
Confidence            1222 25567889877889999999999998844321110  111111           111245999999999999999


Q ss_pred             Eec-CcEEEEec
Q 012721          345 RDY-MNLKLWDI  355 (457)
Q Consensus       345 ~~~-~~i~~wd~  355 (457)
                      |+. |.|.+|.-
T Consensus       330 gd~~g~v~~wa~  341 (1118)
T KOG1275|consen  330 GDHEGHVNLWAD  341 (1118)
T ss_pred             ecccCcEeeecC
Confidence            975 99999974

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.05  E-value=0.00094  Score=64.01  Aligned_cols=72  Identities=13%  Similarity=0.151  Sum_probs=53.7

Q ss_pred             cceEEEEEccCCCeEEEEec--CcEEEEeccCCCC-----------ceeEeeeccccccccccccCCCCccccceEEEcC
Q 012721          328 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-----------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  394 (457)
                      .....+.++|||+++++++.  ++|.+.|+.....           ...+.....++                ...+|.+
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg  384 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG  384 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence            45778999999999998763  9999999975221           12222222222                4789999


Q ss_pred             CCcEEEEEeCCCcEEEEecCC
Q 012721          395 DGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       395 d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      +|....|---|..|..|++..
T Consensus       385 ~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        385 RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCEEEeEeecceeEEEehHH
Confidence            998888888899999999986

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.04  E-value=0.00018  Score=67.09  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=56.5

Q ss_pred             ccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721          327 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  405 (457)
Q Consensus       327 ~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  405 (457)
                      .+.+.+++++|+.+.++.|+ ||.|.+||... +  +....... .++              +.++|+|+|.++++|+..
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~-~~P--------------~~iaWHp~gai~~V~s~q  320 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAE-FIP--------------TLIAWHPDGAIFVVGSEQ  320 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeec-ccc--------------eEEEEcCCCcEEEEEcCC
Confidence            56899999999999988876 69999999864 2  22222122 211              579999999999999999


Q ss_pred             CcEEEEecCCC
Q 012721          406 NLLRIFSHGVG  416 (457)
Q Consensus       406 g~i~iw~~~~~  416 (457)
                      |.+.+||+.-.
T Consensus       321 GelQ~FD~ALs  331 (545)
T PF11768_consen  321 GELQCFDMALS  331 (545)
T ss_pred             ceEEEEEeecC
Confidence            99999998755

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.01  E-value=0.007  Score=52.11  Aligned_cols=220  Identities=14%  Similarity=0.222  Sum_probs=107.3

Q ss_pred             CceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           33 DIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        33 ~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      +.++.++|+|+. .++|+....+.|..++.+ ++.+                         ....+.+.           
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl-------------------------r~i~l~g~-----------   64 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL-------------------------RRIPLDGF-----------   64 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE-------------------------EEEE-SS------------
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE-------------------------EEEeCCCC-----------
Confidence            459999999975 566777778877766654 3321                         11123332           


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccce-eEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                        +-.-.|++  -.++.++++.-.++.+.+.++..... .....                                    
T Consensus        65 --~D~EgI~y--~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~------------------------------------  104 (248)
T PF06977_consen   65 --GDYEGITY--LGNGRYVLSEERDQRLYIFTIDDDTTSLDRAD------------------------------------  104 (248)
T ss_dssp             --SSEEEEEE---STTEEEEEETTTTEEEEEEE----TT--EEE------------------------------------
T ss_pred             --CCceeEEE--ECCCEEEEEEcCCCcEEEEEEeccccccchhh------------------------------------
Confidence              33677888  35665555555689898888843211 11000                                    


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC--CcceeeeeecCCC-cccCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKPS-NMDDL  266 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~~~-~~~~~  266 (457)
                           ++-+.+.          +...+...+-.++|+|.++.|+.+ ...-..+|.++.  ............. .....
T Consensus       105 -----~~~~~l~----------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen  105 -----VQKISLG----------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             -----EEEEE-------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             -----ceEEecc----------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence                 0000000          002355678899999988888877 666666776652  1222221111000 01223


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ...+.+++++|..+.+++.+..+..|..+|. +++... ......+.+       -+...-...-.|+|.++|++.+++.
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~-~~~L~~g~~-------gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVS-SLSLDRGFH-------GLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEE-EEE-STTGG-------G-SS---SEEEEEE-TT--EEEEET
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEE-EEEeCCccc-------CcccccCCccEEEECCCCCEEEEcC
Confidence            3457889999987688888899999999994 443321 011111100       0000113467899999997666654


Q ss_pred             cCcEEEE
Q 012721          347 YMNLKLW  353 (457)
Q Consensus       347 ~~~i~~w  353 (457)
                      -+..+++
T Consensus       241 pNlfy~f  247 (248)
T PF06977_consen  241 PNLFYRF  247 (248)
T ss_dssp             TTEEEEE
T ss_pred             CceEEEe
Confidence            3544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.00  E-value=0.01  Score=55.17  Aligned_cols=279  Identities=15%  Similarity=0.155  Sum_probs=128.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCc------c--cchhhhhhccc---ccccC-----CCccceeeee
Q 012721           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ------H--ISRSELEKQMD---FTSTS-----HPEYRYKTEF   97 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~------~--~~~~~~~~~~~---~~~~~-----~~~~~~~~~~   97 (457)
                      .|+++.|+++..-||+|...|.|.||.....+.....      .  -++..+.....   +++..     ...+.+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5899999999888999999999999998765432100      0  00000000000   00000     0112222233


Q ss_pred             ccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccC
Q 012721           98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (457)
Q Consensus        98 ~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (457)
                      +...            ++|++++.  |.-| +++.|..+|.+.|.|++............                    
T Consensus        83 ~~~~------------g~vtal~~--S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~--------------------  127 (395)
T PF08596_consen   83 DAKQ------------GPVTALKN--SDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE--------------------  127 (395)
T ss_dssp             ---S-------------SEEEEEE---BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------
T ss_pred             eccC------------CcEeEEec--CCCc-EEEEEecCCcEEEEECCCCeEEeeccccc--------------------
Confidence            3333            89999998  4444 99999999999999997765544322110                    


Q ss_pred             CCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeC-----CCC---CEEEEe-CCCeEEEEEcCC
Q 012721          178 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-----SDC---ETFVSA-DDLRINLWNLEI  248 (457)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~---~~l~~~-~d~~i~iwd~~~  248 (457)
                                                       ..........++++.|.     .|+   -.+++| ..|.+.+|.+.-
T Consensus       128 ---------------------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp  174 (395)
T PF08596_consen  128 ---------------------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP  174 (395)
T ss_dssp             -----------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred             ---------------------------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence                                             00002334456777774     233   356777 889999998752


Q ss_pred             -CcceeeeeecCCCcccCCCCceEEEE-EecCC--------------------ccEEEEEccCCeEEEEEccCCeeeccc
Q 012721          249 -SDQCFNIVDMKPSNMDDLTEVITSAE-FHPIY--------------------CNLLAYSSSRGFVRLVDMRQSALCDHS  306 (457)
Q Consensus       249 -~~~~~~~~~~~~~~~~~~~~~i~~v~-~~p~~--------------------~~~l~~~~~dg~i~lwd~~~~~~~~~~  306 (457)
                       .+.........  ....+.+.|..+. ++.+.                    +.++++ ..+..++++...+.+...  
T Consensus       175 ~~~g~f~v~~~~--~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~~~~k~~~--  249 (395)
T PF08596_consen  175 SSNGRFSVQFAG--ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFKPPKSKGAH--  249 (395)
T ss_dssp             -GGG-EEEEEEE--EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-TT---EEE--
T ss_pred             CCCCceEEEEee--ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEeCCCCcccc--
Confidence             22222111000  0123455555554 32221                    013333 446678999887765432  


Q ss_pred             cccccccccccCcccceeccccceEEEEEc-----cCCCeEEEE-ecCcEEEEeccCCCCceeEeeeccccccccccccC
Q 012721          307 ARILRDAAESHGSKSFFTEIIASISDIKFA-----NDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN  380 (457)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-----~~g~~l~s~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (457)
                       +.++.              ......+.+-     ..+..|++- .+|.|++|.+-. -+.+.....+...-..      
T Consensus       250 -K~~~~--------------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~------  307 (395)
T PF08596_consen  250 -KSFDD--------------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSR------  307 (395)
T ss_dssp             -EE-SS---------------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HH------
T ss_pred             -eeecc--------------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCccccc------
Confidence             22211              0112233332     234455544 459999999964 6666666553221000      


Q ss_pred             CCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          381 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       381 ~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                           .....+++++|..++-.+. ..+.++.+
T Consensus       308 -----~~~~ssis~~Gdi~~~~gp-sE~~l~sv  334 (395)
T PF08596_consen  308 -----RLSSSSISRNGDIFYWTGP-SEIQLFSV  334 (395)
T ss_dssp             -----HHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred             -----cccccEECCCCCEEEEeCc-ccEEEEEE
Confidence                 0135778888887765544 33444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.99  E-value=0.00021  Score=67.81  Aligned_cols=120  Identities=13%  Similarity=0.103  Sum_probs=85.4

Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      .|.--++  +..+++++.|+.-|.+.+|+-..++......                                        
T Consensus        35 ~v~lTc~--dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~----------------------------------------   72 (726)
T KOG3621|consen   35 RVKLTCV--DATEEYLAMGSSAGSVYLYNRHTGEMRKLKN----------------------------------------   72 (726)
T ss_pred             eEEEEEe--ecCCceEEEecccceEEEEecCchhhhcccc----------------------------------------
Confidence            3444444  5678899999999999999987765443211                                        


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v  273 (457)
                                          .+-...+..+..+++..++|+| ..|.|.++-++. .......-..+ --+.|...|+++
T Consensus        73 --------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t~-~d~~~~~rVTal  130 (726)
T KOG3621|consen   73 --------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVTP-CDKSHKCRVTAL  130 (726)
T ss_pred             --------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeecc-ccccCCceEEEE
Confidence                                1233345566778888888888 999999998874 32221111111 123478999999


Q ss_pred             EEecCCccEEEEEccCCeEEEEEccC
Q 012721          274 EFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       274 ~~~p~~~~~l~~~~~dg~i~lwd~~~  299 (457)
                      +|++++ ..+.+|...|+|.+-.+..
T Consensus       131 ~Ws~~~-~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  131 EWSKNG-MKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             Eecccc-cEEeecCCCceEEEEEech
Confidence            999999 9999999999999887776

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.98  E-value=0.0082  Score=51.71  Aligned_cols=213  Identities=16%  Similarity=0.200  Sum_probs=105.9

Q ss_pred             CcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          114 EKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       114 ~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                      ..+..++|  .++ +.++++....+.|...+. +|+....+.+.                                    
T Consensus        22 ~e~SGLTy--~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~------------------------------------   62 (248)
T PF06977_consen   22 DELSGLTY--NPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD------------------------------------   62 (248)
T ss_dssp             S-EEEEEE--ETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S------------------------------------
T ss_pred             CCccccEE--cCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC------------------------------------
Confidence            55999999  465 446666777888877775 35555544322                                    


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCccee-----eeeecCCCcccCC
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-----NIVDMKPSNMDDL  266 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~  266 (457)
                                             + .+..-.+++..++.++++. .++.+.++++.......     +.+.+.  ....+
T Consensus        63 -----------------------g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~--~~~~~  116 (248)
T PF06977_consen   63 -----------------------G-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLG--FPNKG  116 (248)
T ss_dssp             -----------------------S--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE-----S---
T ss_pred             -----------------------C-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecc--cccCC
Confidence                                   1 2356678888788777777 89999999985322221     122211  01235


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccC--Ceeec--cccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ--SALCD--HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l  342 (457)
                      ...+-.++|+|.+ +.|+.+-+..-..+|.++.  .....  .....+..          .......+.+++++|....|
T Consensus       117 N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~S~l~~~p~t~~l  185 (248)
T PF06977_consen  117 NKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD----------DKLFVRDLSGLSYDPRTGHL  185 (248)
T ss_dssp             SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-----------HT--SS---EEEEETTTTEE
T ss_pred             CcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeecccccccc----------ccceeccccceEEcCCCCeE
Confidence            5668999999988 5565666666667777654  11000  00000000          01112457899999975444


Q ss_pred             E-EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721          343 L-SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  411 (457)
Q Consensus       343 ~-s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw  411 (457)
                      . ..+. ..|..+|..  ++++..+.-..+.......+.      .--.++|.++|+ |+..++-+..++|
T Consensus       186 liLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~------QpEGIa~d~~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  186 LILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIP------QPEGIAFDPDGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---------SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred             EEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccC------CccEEEECCCCC-EEEEcCCceEEEe
Confidence            4 4433 888888853  777665554332110000000      013799999986 4445576766665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.97  E-value=0.00075  Score=63.21  Aligned_cols=171  Identities=13%  Similarity=0.075  Sum_probs=89.9

Q ss_pred             eEEEeCCCCCEEEEe--CCCe--EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCe--EEEE
Q 012721          222 NSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF--VRLV  295 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~--i~lw  295 (457)
                      ..-+|+|||+.|+.+  .|+.  |+++|+. .+...+        +....+.-..-.|+|+|..++.+.+..|.  |.++
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~-~~~~~~--------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~  311 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLD-GKNLPR--------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLY  311 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCC-CCccee--------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence            356799999998876  5665  5556666 333222        22233333467899999444444455665  4445


Q ss_pred             EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cCc--EEEEeccCCCCceeEeeecccc
Q 012721          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMN--LKLWDIRMDSTPVATFKIHEHL  371 (457)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~--i~~wd~~~~~~~~~~~~~~~~~  371 (457)
                      |+..+...   ..++..               ..-....|+|||++|+..+  +|.  |.+.|+..... ...+......
T Consensus       312 ~~~g~~~~---riT~~~---------------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~  372 (425)
T COG0823         312 DLEGSQVT---RLTFSG---------------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLN  372 (425)
T ss_pred             CCCCCcee---EeeccC---------------CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccC
Confidence            55554321   011111               2222778999999999654  355  55666654222 3333322211


Q ss_pred             ccccccccCCCCccccceEEEcCCCcEEEEEeCCC-cEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721          372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQ  436 (457)
Q Consensus       372 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~  436 (457)
                                      ...+|.+++..++..+..+ .=.++.+....+....+....+.+...+|+
T Consensus       373 ----------------e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~~~~~~~~~p~w~  422 (425)
T COG0823         373 ----------------ESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLPLADGDVRVPAWS  422 (425)
T ss_pred             ----------------CCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEeccCcceeccccc
Confidence                            2567888888777554432 223333332223333444444444444444

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.96  E-value=0.016  Score=53.82  Aligned_cols=84  Identities=14%  Similarity=0.132  Sum_probs=57.5

Q ss_pred             eeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-------
Q 012721          323 FTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-------  394 (457)
Q Consensus       323 ~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------  394 (457)
                      +.+....+.+++.+|++++.|+.+. |+|.++|+.. +..++.+++-.+.                 .+.|-.       
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdA-----------------qc~wi~~~~~~~~  364 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDA-----------------QCGWIEVPEEGDR  364 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccc-----------------eEEEEEeeccccc
Confidence            4445566889999999988888766 9999999975 7777777765443                 122210       


Q ss_pred             -------------CCcEE-EEEeCCCcEEEEecCCCCceeeEEec
Q 012721          395 -------------DGLHF-ATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       395 -------------d~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                                   ...+| +-+-.-|.|-||.+++| ..+..+..
T Consensus       365 ~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g-~Rv~a~~v  408 (415)
T PF14655_consen  365 DRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQG-PRVAAFNV  408 (415)
T ss_pred             ccccccccCCCCcceEEEEEEeccCCeEEEEecCCC-CEEEEEEe
Confidence                         01233 34666899999999999 55555543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.92  E-value=0.0038  Score=58.82  Aligned_cols=105  Identities=12%  Similarity=0.057  Sum_probs=59.7

Q ss_pred             cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ecCcEEEEeccCCC
Q 012721          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS  359 (457)
Q Consensus       281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~~~  359 (457)
                      ..++.++.+|.+..+|..+++..      ++. ..            .....+..  .+..|+.+ .++.+..+|..+ +
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~~~------W~~-~~------------~~~~~~~~--~~~~vy~~~~~g~l~ald~~t-G  314 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQIV------WKR-EY------------GSVNDFAV--DGGRIYLVDQNDRVYALDTRG-G  314 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCCEE------Eee-cC------------CCccCcEE--ECCEEEEEcCCCeEEEEECCC-C
Confidence            45666778999999999988633      322 00            01111222  23444444 458999999875 5


Q ss_pred             CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      +.+-..........              .+...  .+.+|+.++.||.|+..|..+| +.+...+
T Consensus       315 ~~~W~~~~~~~~~~--------------~sp~v--~~g~l~v~~~~G~l~~ld~~tG-~~~~~~~  362 (394)
T PRK11138        315 VELWSQSDLLHRLL--------------TAPVL--YNGYLVVGDSEGYLHWINREDG-RFVAQQK  362 (394)
T ss_pred             cEEEcccccCCCcc--------------cCCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEEEE
Confidence            54332211111100              12222  2457788999999999999999 4444443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.89  E-value=0.023  Score=53.51  Aligned_cols=40  Identities=18%  Similarity=0.187  Sum_probs=31.2

Q ss_pred             cceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeec
Q 012721          328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH  368 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~  368 (457)
                      +++..|+.||+|++||.-.+ |.+.+...+. .+.+..+...
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~  257 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD  257 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence            57999999999999998766 9998888765 4555555544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.86  E-value=0.0094  Score=54.01  Aligned_cols=167  Identities=13%  Similarity=0.062  Sum_probs=71.7

Q ss_pred             CCCCeeEEEeCCC-CCEEEEe----CCCe-EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEE-Ec--
Q 012721          217 HDFNINSISNNSD-CETFVSA----DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SS--  287 (457)
Q Consensus       217 h~~~v~~~~~~~~-~~~l~~~----~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~--  287 (457)
                      ....+..+.|+|. ..+|+.|    .+.. -+||-++..+.....+..     ......+..=-|.|+| ..|.. +.  
T Consensus       186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-----~~~~e~~gHEfw~~DG-~~i~y~~~~~  259 (386)
T PF14583_consen  186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-----RMEGESVGHEFWVPDG-STIWYDSYTP  259 (386)
T ss_dssp             ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTS-S-EEEEEEET
T ss_pred             cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-----CCCCcccccccccCCC-CEEEEEeecC
Confidence            4456778899984 4555554    3442 366766654544433210     1112344455689999 54433 22  


Q ss_pred             --cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE-Eec--C--------------
Q 012721          288 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY--M--------------  348 (457)
Q Consensus       288 --~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~--~--------------  348 (457)
                        .+..|.-+|..+++..    .....               ......-.++||++++- |+|  .              
T Consensus       260 ~~~~~~i~~~d~~t~~~~----~~~~~---------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p  320 (386)
T PF14583_consen  260 GGQDFWIAGYDPDTGERR----RLMEM---------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP  320 (386)
T ss_dssp             TT--EEEEEE-TTT--EE----EEEEE----------------SEEEEEE-TTSSEEEEEE-------------------
T ss_pred             CCCceEEEeeCCCCCCce----EEEeC---------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence              2445666777765422    12221               23445556788988874 333  1              


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG  414 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~  414 (457)
                      -|+++++..  .....+..|...-..+..-.....    -...|+||+++|+-.| ..|...||=+.
T Consensus       321 ~i~~~~~~~--~~~~~l~~h~~sw~v~~~~~q~~h----Php~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  321 WIYLFDVEA--GRFRKLARHDTSWKVLDGDRQVTH----PHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             EEEEEETTT--TEEEEEEE-------BTTBSSTT--------EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             EEEEecccc--CceeeeeeccCcceeecCCCccCC----CCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            355666653  222233333311100000000001    2689999999877554 57776666543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.85  E-value=0.0092  Score=55.24  Aligned_cols=150  Identities=12%  Similarity=0.046  Sum_probs=74.4

Q ss_pred             CCCceEEEEEecCCccEEEEE--ccC---CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc-cCC
Q 012721          266 LTEVITSAEFHPIYCNLLAYS--SSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDG  339 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~--~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~g  339 (457)
                      -...+..+.|.+++ ..|+..  ..+   -.+.++|..++...    .+...  ...       +--..-....|. +++
T Consensus       182 ~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~~~----~~~~e--~~~-------~Wv~~~~~~~~~~~~~  247 (353)
T PF00930_consen  182 QDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGETR----VVLEE--TSD-------GWVDVYDPPHFLGPDG  247 (353)
T ss_dssp             SSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTTCE----EEEEE--ESS-------SSSSSSSEEEE-TTTS
T ss_pred             CccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCcee----EEEEe--cCC-------cceeeecccccccCCC
Confidence            35668899999998 633333  222   23566777665322    11111  000       000112244554 666


Q ss_pred             CeEEE-Ee-c--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEE-EEeCC--Cc--EEE
Q 012721          340 QHLLS-RD-Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYS--NL--LRI  410 (457)
Q Consensus       340 ~~l~s-~~-~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~d--g~--i~i  410 (457)
                      ..++- .. +  ..|.+++..  +.....+....-.+.              .-+.|+++++.|+ ++..+  +.  |+.
T Consensus       248 ~~~l~~s~~~G~~hly~~~~~--~~~~~~lT~G~~~V~--------------~i~~~d~~~~~iyf~a~~~~p~~r~lY~  311 (353)
T PF00930_consen  248 NEFLWISERDGYRHLYLYDLD--GGKPRQLTSGDWEVT--------------SILGWDEDNNRIYFTANGDNPGERHLYR  311 (353)
T ss_dssp             SEEEEEEETTSSEEEEEEETT--SSEEEESS-SSS-EE--------------EEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred             CEEEEEEEcCCCcEEEEEccc--ccceeccccCceeec--------------ccceEcCCCCEEEEEecCCCCCceEEEE
Confidence            55553 32 3  455556654  444444443333221              1367888877655 44442  34  444


Q ss_pred             EecCCCCceeeEEecCCCcceeeeeccCCcceeccc
Q 012721          411 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  446 (457)
Q Consensus       411 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~  446 (457)
                      -++.+ ......+.........+.|+|++.-.....
T Consensus       312 v~~~~-~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  312 VSLDS-GGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             EETTE-TTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             EEeCC-CCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            45551 234555555444446999999988766533

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.79  E-value=0.014  Score=50.60  Aligned_cols=108  Identities=13%  Similarity=0.079  Sum_probs=58.1

Q ss_pred             CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC---CCceEEEEEecCCccEEEEEccCCe-EEEEEccCCeeec
Q 012721          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCD  304 (457)
Q Consensus       230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~i~~v~~~p~~~~~l~~~~~dg~-i~lwd~~~~~~~~  304 (457)
                      +..++.+ .++.|..+|++ .++.+-...........+   ...+..-....++  .+..++.++. +.+ |+.+++.  
T Consensus       122 ~~~~~~~~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~~--  195 (238)
T PF13360_consen  122 GDRLYVGTSSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGEK--  195 (238)
T ss_dssp             TTEEEEEETCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTEE--
T ss_pred             cCEEEEEeccCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE-ECCCCCE--
Confidence            6777777 89999999998 555543332211000000   0111222222333  5555666664 555 9999862  


Q ss_pred             cccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCce
Q 012721          305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV  362 (457)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~  362 (457)
                          .+.. .            ...+..+ ...++..|+.++ ++.|..||+++ ++.+
T Consensus       196 ----~w~~-~------------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t-G~~~  235 (238)
T PF13360_consen  196 ----LWSK-P------------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKT-GKVV  235 (238)
T ss_dssp             ----EEEE-C------------SS-ECEC-EECCCTEEEEEETTTEEEEEETTT-TEEE
T ss_pred             ----EEEe-c------------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCC-CCEE
Confidence                2322 0            0112221 345677777665 59999999986 5543

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.78  E-value=0.0068  Score=58.35  Aligned_cols=56  Identities=14%  Similarity=0.054  Sum_probs=36.7

Q ss_pred             ceEEEcCCCcEEEEEeC-CCcEEEEecCCCCc-----------eeeEEecCCCcceeeeeccCCcceec
Q 012721          388 FECSVSGDGLHFATGSY-SNLLRIFSHGVGSA-----------GGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       388 ~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~-----------~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ..+.++|||+++++++. +.+|.|.|+.+.+.           .....+.-.+ ....+|.++|.+..+
T Consensus       324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~ayts  391 (635)
T PRK02888        324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTT  391 (635)
T ss_pred             cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEe
Confidence            57999999998886655 89999999988632           1222222222 234567777765544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.78  E-value=9.7e-06  Score=75.54  Aligned_cols=196  Identities=11%  Similarity=0.076  Sum_probs=124.1

Q ss_pred             CCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc----cC
Q 012721          217 HDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----SR  289 (457)
Q Consensus       217 h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~----~d  289 (457)
                      ....+.|+++.-  +...++.| .+|.|-+-.++.....-..      ...++....++++|++-..+.||.|-    .|
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E------~tp~~ar~Ct~lAwneLDtn~LAagldkhrnd  128 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE------VTPGYARPCTSLAWNELDTNHLAAGLDKHRND  128 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccce------ecccccccccccccccccHHHHHhhhhhhccc
Confidence            344667777654  44577788 8999999988743322111      14678889999999987646777764    35


Q ss_pred             CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeec
Q 012721          290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH  368 (457)
Q Consensus       290 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~  368 (457)
                      -.+.|||+.++-........|.            .+......+++|..+.+++.+|.. ..+.++|++........+.  
T Consensus       129 s~~~Iwdi~s~ltvPke~~~fs------------~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--  194 (783)
T KOG1008|consen  129 SSLKIWDINSLLTVPKESPLFS------------SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--  194 (783)
T ss_pred             CCccceecccccCCCccccccc------------cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--
Confidence            6799999988621111001111            112345668899988899999876 8999999984221111121  


Q ss_pred             cccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEe-cCCCCceeeEEecCCCc----ceeeeeccCCcce
Q 012721          369 EHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFS-HGVGSAGGITVEAGKNE----NRKPILQAAPRAR  442 (457)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~-~~~~~~~~~~~~~~~~~----v~~~~~~p~~~~~  442 (457)
                      ...+               ..+...| .+.|+++-. ||.|.+|| ..+-+..++.+.....+    +..++|.|..+..
T Consensus       195 Tk~v---------------qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl  258 (783)
T KOG1008|consen  195 TKYV---------------QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL  258 (783)
T ss_pred             hhhc---------------ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence            1111               2466677 677887666 89999999 44444444444433433    8899999998665


Q ss_pred             eccccc
Q 012721          443 RSSLSN  448 (457)
Q Consensus       443 ~~~~~~  448 (457)
                      +..+..
T Consensus       259 la~l~R  264 (783)
T KOG1008|consen  259 LAVLSR  264 (783)
T ss_pred             hhhhcc
Confidence            554433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.77  E-value=0.016  Score=53.82  Aligned_cols=273  Identities=13%  Similarity=0.049  Sum_probs=127.1

Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      .|+.+.|  .++...|+++...|.|-+|.+...+...........+...-.+.                       ..+.
T Consensus         3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~-----------------------~~~~   57 (395)
T PF08596_consen    3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFS-----------------------LNNS   57 (395)
T ss_dssp             -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE------------------S-------------------------GGGS
T ss_pred             eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccccc-----------------------ccCC
Confidence            4889999  56766899999999999998876533220000000000000000                       0000


Q ss_pred             ceEEEeccCc------cccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC-cccCC
Q 012721          195 ATKIANVGNS------VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDL  266 (457)
Q Consensus       195 ~i~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~  266 (457)
                      .-.+-|+..-      ....+...+ ....++|++++.+ |-.+++.| .+|.+.|.|++ +...+..-.+... .-...
T Consensus        58 ~~~l~di~~r~~~~~~~gf~P~~l~-~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~  134 (395)
T PF08596_consen   58 PGKLTDISDRAPPSLKEGFLPLTLL-DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSS  134 (395)
T ss_dssp             S-SEEE-GGG--TT-SEEEEEEEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS-
T ss_pred             CcceEEehhhCCcccccccCchhhe-eccCCcEeEEecC-CCcEEEEEecCCcEEEEECC-CCeEEeecccccccccccc
Confidence            1222232221      112222323 5568899999997 66699999 99999999998 4444333222210 11224


Q ss_pred             CCceEEEEEec-----CC--ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEE-EccC
Q 012721          267 TEVITSAEFHP-----IY--CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK-FAND  338 (457)
Q Consensus       267 ~~~i~~v~~~p-----~~--~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~s~~  338 (457)
                      ...++++.|.-     |+  +-.+++|...|.+.+|.+.-.............          ...+.+.|..+. ++.+
T Consensus       135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~----------~~~~~~~i~~I~~i~~~  204 (395)
T PF08596_consen  135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA----------TTNHDSPILSIIPINAD  204 (395)
T ss_dssp             ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE----------E--SS----EEEEEETT
T ss_pred             ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeec----------cccCCCceEEEEEEECC
Confidence            46788888862     11  137888889999999987521000000001100          012233444333 2211


Q ss_pred             ---------------------CCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE-----
Q 012721          339 ---------------------GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-----  392 (457)
Q Consensus       339 ---------------------g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----  392 (457)
                                           ..+++.+++..++++.... .+............               ..+.+     
T Consensus       205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~---------------~~~~vv~~~~  268 (395)
T PF08596_consen  205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLC---------------SSASVVPTIS  268 (395)
T ss_dssp             T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEE---------------EEEEEEEEE-
T ss_pred             CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceeecccccc---------------ceEEEEeecc
Confidence                                 1256677778999998864 44433332111111               23344     


Q ss_pred             cCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC----CcceeeeeccCCcce
Q 012721          393 SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK----NENRKPILQAAPRAR  442 (457)
Q Consensus       393 s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~  442 (457)
                      ...+..|++-..+|.|+++.+..- +.+...+-..    .......++++|...
T Consensus       269 ~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~~~~ssis~~Gdi~  321 (395)
T PF08596_consen  269 RNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRRLSSSSISRNGDIF  321 (395)
T ss_dssp             EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred             cCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccccccccEECCCCCEE
Confidence            235678888999999999999987 4444444322    234445555555433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.76  E-value=0.026  Score=50.25  Aligned_cols=259  Identities=12%  Similarity=0.089  Sum_probs=130.2

Q ss_pred             EEEEecCCCCEEEEee----------CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          119 VRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       119 v~~~~s~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                      +..  +++++.+++++          ..-.|.+||..+-.....+.++...            +...........++.++
T Consensus        41 ~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~------------R~~~~~~~~~~~ls~dg  106 (342)
T PF06433_consen   41 VAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP------------RAQVVPYKNMFALSADG  106 (342)
T ss_dssp             EEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-------------B--BS--GGGEEE-TTS
T ss_pred             eeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc------------hheecccccceEEccCC
Confidence            445  68888887743          4557999999988777666655431            11122222333445555


Q ss_pred             cc------ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCc
Q 012721          189 EW------TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       189 ~~------~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                      +|      .+...|.+.|+....-   +..+   ....+..+--+++..+...|.||.+.-..+...++..+.-. +  -
T Consensus       107 k~~~V~N~TPa~SVtVVDl~~~kv---v~ei---~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~--~  177 (342)
T PF06433_consen  107 KFLYVQNFTPATSVTVVDLAAKKV---VGEI---DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-K--V  177 (342)
T ss_dssp             SEEEEEEESSSEEEEEEETTTTEE---EEEE---EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-E--E
T ss_pred             cEEEEEccCCCCeEEEEECCCCce---eeee---cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec-c--c
Confidence            53      3444666777653221   1111   00112222112334455556899988888886555442210 0  1


Q ss_pred             ccCCCCce-EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721          263 MDDLTEVI-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (457)
Q Consensus       263 ~~~~~~~i-~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~  341 (457)
                      +..-.+++ ..-++...+ ..++.-+.+|.|+--|+.......  ...+....+.. ....+.  .+...-+++++....
T Consensus       178 F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e-~~~~Wr--PGG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  178 FDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAE-KADGWR--PGGWQLIAYHAASGR  251 (342)
T ss_dssp             SSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHH-HHTTEE--E-SSS-EEEETTTTE
T ss_pred             cCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccccCccc-cccCcC--CcceeeeeeccccCe
Confidence            22222222 233445554 556667889999988887754221  11111100000 000000  133445777765544


Q ss_pred             EEE----Ee-----c--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEe-CCCcE
Q 012721          342 LLS----RD-----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLL  408 (457)
Q Consensus       342 l~s----~~-----~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~-~dg~i  408 (457)
                      |..    +.     +  ..|-++|+.+ ++.+.++......                .++..+.|.+ +|++.+ .++.+
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~~~~~~~~l  314 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYALSAGDGTL  314 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEEEETTTTEE
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEEEcCCCCeE
Confidence            443    21     1  2466777775 7777777643322                4788888765 665544 57899


Q ss_pred             EEEecCCCCceeeEEe
Q 012721          409 RIFSHGVGSAGGITVE  424 (457)
Q Consensus       409 ~iw~~~~~~~~~~~~~  424 (457)
                      .+||..+| +....++
T Consensus       315 ~v~D~~tG-k~~~~~~  329 (342)
T PF06433_consen  315 DVYDAATG-KLVRSIE  329 (342)
T ss_dssp             EEEETTT---EEEEE-
T ss_pred             EEEeCcCC-cEEeehh
Confidence            99999999 5555554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.75  E-value=0.0013  Score=65.51  Aligned_cols=104  Identities=19%  Similarity=0.160  Sum_probs=71.9

Q ss_pred             CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccc
Q 012721          231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  309 (457)
Q Consensus       231 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~  309 (457)
                      ...+.| .++.|..||.+..+..+  +......+ .......|++-+.+|  +||+|+.+|.||+||- .++..      
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~--v~~~~k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A------  610 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKL--VDSQSKQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA------  610 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCce--eecccccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh------
Confidence            345567 99999999999554221  11111111 234557788877776  8999999999999993 22111      


Q ss_pred             ccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEecc
Q 012721          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  356 (457)
Q Consensus       310 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~  356 (457)
                                +..+.+-..+|..|..+.||++|++.++..+.|++..
T Consensus       611 ----------KT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  611 ----------KTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             ----------hhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence                      1223344679999999999999998888888888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.75  E-value=0.012  Score=54.37  Aligned_cols=211  Identities=9%  Similarity=0.027  Sum_probs=99.7

Q ss_pred             CCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCc-ccCC---------CCceEEEEEecCCccEEEEEc
Q 012721          218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-MDDL---------TEVITSAEFHPIYCNLLAYSS  287 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~---------~~~i~~v~~~p~~~~~l~~~~  287 (457)
                      ...+....|+|+|+.++...++.|++++.. .+...++..-.... +.|-         -+.-..+-|+||+ +.|+...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLA-TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESST-TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECC-CCCeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEEE
Confidence            456788999999999999988999999987 34444332111000 0000         1123567899999 7777665


Q ss_pred             c-CCeEEEEEc---cCCee---ecc--------------ccccccccccccCcc-c---ceeccccceEEEEEccCCC-e
Q 012721          288 S-RGFVRLVDM---RQSAL---CDH--------------SARILRDAAESHGSK-S---FFTEIIASISDIKFANDGQ-H  341 (457)
Q Consensus       288 ~-dg~i~lwd~---~~~~~---~~~--------------~~~~~~~~~~~~~~~-~---~~~~h~~~v~~~~~s~~g~-~  341 (457)
                      . +..|+.+.+   .....   ...              .+.++.. ....... .   .+..-...+..+.|.++++ +
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~-~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l  198 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL-ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL  198 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES-SSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC-CCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence            3 333333322   11100   000              0000000 0000000 0   0012245688999999998 4


Q ss_pred             EEEE-e-c---CcEEEEeccCCCCceeEe-eeccccccccccccCCCCccccceEEEc-CCC-cEEEEEeCCCcEEEEec
Q 012721          342 LLSR-D-Y---MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVS-GDG-LHFATGSYSNLLRIFSH  413 (457)
Q Consensus       342 l~s~-~-~---~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~-~~l~s~~~dg~i~iw~~  413 (457)
                      ++.- + +   -.+.++|..+ ++..... ......+...            ....|. +++ .+|.....||--+|+-+
T Consensus       199 ~~~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~~~------------~~~~~~~~~~~~~l~~s~~~G~~hly~~  265 (353)
T PF00930_consen  199 WVQWLNRDQNRLDLVLCDAST-GETRVVLEETSDGWVDVY------------DPPHFLGPDGNEFLWISERDGYRHLYLY  265 (353)
T ss_dssp             EEEEEETTSTEEEEEEEEECT-TTCEEEEEEESSSSSSSS------------SEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred             EEEEcccCCCEEEEEEEECCC-CceeEEEEecCCcceeee------------cccccccCCCCEEEEEEEcCCCcEEEEE
Confidence            4432 2 1   4456667765 3332222 2233333211            245554 554 45555557776555544


Q ss_pred             CCCCceeeEEecCCCcce-eeeeccCCcceec
Q 012721          414 GVGSAGGITVEAGKNENR-KPILQAAPRARRS  444 (457)
Q Consensus       414 ~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~~~  444 (457)
                      .........+....-.|. -+.+.+++....+
T Consensus       266 ~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf  297 (353)
T PF00930_consen  266 DLDGGKPRQLTSGDWEVTSILGWDEDNNRIYF  297 (353)
T ss_dssp             ETTSSEEEESS-SSS-EEEEEEEECTSSEEEE
T ss_pred             cccccceeccccCceeecccceEcCCCCEEEE
Confidence            433223344444455553 4566677665554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.67  E-value=0.0042  Score=58.54  Aligned_cols=167  Identities=10%  Similarity=-0.007  Sum_probs=93.5

Q ss_pred             CCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      .......+.++|+|++++.+.||.-.|+... .....            ..+....+.|.+.+  .+|+-...++|.++.
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~-~~r~k------------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTAL-AWRNK------------AFGSGLSFVWSSRN--RYAVLESSSTIKIYK   95 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEETTEEEEEETT-TTEEE------------EEEE-SEEEE-TSS--EEEEE-TTS-EEEEE
T ss_pred             CCcCCeeEEECCCCCEEEEEcCCEEEEEEcc-CCccc------------ccCceeEEEEecCc--cEEEEECCCeEEEEE
Confidence            3445789999999999999999999998843 22211            12445678899954  567777788899963


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  376 (457)
                      --+...    .+.+..              ...+..+-.   |.+|...+++.|.+||+.+ ++.+..+....  +    
T Consensus        96 n~~~~~----~k~i~~--------------~~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--v----  147 (443)
T PF04053_consen   96 NFKNEV----VKSIKL--------------PFSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--V----  147 (443)
T ss_dssp             TTEE-T----T-------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E-------
T ss_pred             cCcccc----ceEEcC--------------CcccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC--C----
Confidence            222111    012222              112333332   8888888778899999986 78888887543  1    


Q ss_pred             cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC---------Cc-eeeEEecCCCcceeeeeccC
Q 012721          377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SA-GGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~---------~~-~~~~~~~~~~~v~~~~~~p~  438 (457)
                                 ..+.|++++.+++..+.+ .++|++.+..         -. ....+......|.+..|..+
T Consensus       148 -----------k~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  148 -----------KYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             -----------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             -----------cEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence                       479999999999998865 6778775422         11 22333332667777777766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.64  E-value=0.019  Score=54.08  Aligned_cols=136  Identities=9%  Similarity=-0.057  Sum_probs=76.3

Q ss_pred             CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (457)
Q Consensus       230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~  308 (457)
                      +..++.+ .++.+..+|..+.....+.   +   +.    ....+.  ..+ ..++.++.+|.+..+|..+++..     
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~---~---~~----~~~~~~--~~~-~~vy~~~~~g~l~ald~~tG~~~-----  317 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKR---E---YG----SVNDFA--VDG-GRIYLVDQNDRVYALDTRGGVEL-----  317 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEee---c---CC----CccCcE--EEC-CEEEEEcCCCeEEEEECCCCcEE-----
Confidence            3445555 8899999999844333321   1   11    111122  234 56777888999999999888632     


Q ss_pred             cccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCcccc
Q 012721          309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  387 (457)
Q Consensus       309 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  387 (457)
                       +.. ....         .....+....  +.+|+.++ +|.+.+.|..+ ++.+.........+.              
T Consensus       318 -W~~-~~~~---------~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~--------------  369 (394)
T PRK11138        318 -WSQ-SDLL---------HRLLTAPVLY--NGYLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFL--------------  369 (394)
T ss_pred             -Ecc-cccC---------CCcccCCEEE--CCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcce--------------
Confidence             221 0000         0011112221  34555554 59999999986 777766654322110              


Q ss_pred             ceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          388 FECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       388 ~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                      ....+  .+..|+.++.||.|+.+++
T Consensus       370 s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        370 SEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             eCCEE--ECCEEEEEeCCceEEEEeC
Confidence            11222  2447888899999988775

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.00097  Score=64.75  Aligned_cols=80  Identities=18%  Similarity=0.313  Sum_probs=64.6

Q ss_pred             CCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      |...+.-.-.+++++|+|..-.||.|-.-|.+.+|...+.+.                           .+....|.   
T Consensus        52 Pqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---------------------------htv~~th~---  101 (1416)
T KOG3617|consen   52 PQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---------------------------HTVVETHP---  101 (1416)
T ss_pred             CCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee---------------------------eeeccCCC---
Confidence            444554455678899999999999999999999999876552                           22334455   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEec
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  145 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~  145 (457)
                               .+|..+.|  |++|..++++..-|.+.+|...
T Consensus       102 ---------a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  102 ---------APIQGLDW--SHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ---------CCceeEEe--cCCCCeEEEcCCCceeEEEEee
Confidence                     88999999  8999999999999999999876

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.59  E-value=0.0083  Score=43.74  Aligned_cols=65  Identities=18%  Similarity=0.276  Sum_probs=47.0

Q ss_pred             eEEEEECC---CC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           35 VSAIEFDK---TG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        35 V~~~~~s~---~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      |++|++..   || +.|++|+.|..|+||+-+.                             .+.++..+          
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------------~~~Ei~e~----------   42 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------------IVAEITET----------   42 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------EEEEEecc----------
Confidence            56777655   33 6889999999999999542                             23333333          


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEe
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV  144 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~  144 (457)
                         +.|+++.-+   .+..|+.+..+|+|-+|+-
T Consensus        43 ---~~v~~L~~~---~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   43 ---DKVTSLCSL---GGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             ---cceEEEEEc---CCCEEEEEecCCEEEEEeC
Confidence               467888763   3368999999999999975

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00067  Score=60.08  Aligned_cols=97  Identities=14%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             ceeccccceEEEEEccCCC-eEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCC-CcE
Q 012721          322 FFTEIIASISDIKFANDGQ-HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLH  398 (457)
Q Consensus       322 ~~~~h~~~v~~~~~s~~g~-~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~  398 (457)
                      .+..|...|..++|||..+ ++..++ +..|+|.|+++ ...+..+..+...                ++++|.-| ..+
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~~~~----------------wSC~wDlde~h~  250 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAYNQI----------------WSCCWDLDERHV  250 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheeccCCc----------------eeeeeccCCcce
Confidence            5667778899999999887 455565 49999999986 6666677666433                69999876 467


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEEec--CCCcceeeee
Q 012721          399 FATGSYSNLLRIFSHGVGSAGGITVEA--GKNENRKPIL  435 (457)
Q Consensus       399 l~s~~~dg~i~iw~~~~~~~~~~~~~~--~~~~v~~~~~  435 (457)
                      |+.|...|.|.|||++..+.....+.+  ...||-.++.
T Consensus       251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~  289 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAP  289 (463)
T ss_pred             eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecc
Confidence            888889999999999987655555544  3345554433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.57  E-value=0.057  Score=51.06  Aligned_cols=147  Identities=9%  Similarity=0.057  Sum_probs=71.1

Q ss_pred             CCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccc
Q 012721          230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  309 (457)
Q Consensus       230 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~  309 (457)
                      |.+|....++.|.+||+. .++.++.++.         ..|..+.|++++ .+++..+.+ .+.+++........     
T Consensus       117 G~LL~~~~~~~i~~yDw~-~~~~i~~i~v---------~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~~-----  179 (443)
T PF04053_consen  117 GNLLGVKSSDFICFYDWE-TGKLIRRIDV---------SAVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVAA-----  179 (443)
T ss_dssp             SSSEEEEETTEEEEE-TT-T--EEEEESS----------E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHH-----
T ss_pred             CcEEEEECCCCEEEEEhh-HcceeeEEec---------CCCcEEEEECCC-CEEEEEeCC-eEEEEEecchhccc-----
Confidence            777777766699999999 6666665422         247899999999 888888755 56776654420000     


Q ss_pred             ccccccccC-cccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccc
Q 012721          310 LRDAAESHG-SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  388 (457)
Q Consensus       310 ~~~~~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  388 (457)
                       .. .++-. ...........|.+.+|..+ -++.+.. +.++.  +.  +.....+..-+...               +
T Consensus       180 -~~-~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~~lkY--l~--~Ge~~~i~~ld~~~---------------y  236 (443)
T PF04053_consen  180 -IP-EEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-NHLKY--LV--NGETGIIAHLDKPL---------------Y  236 (443)
T ss_dssp             -BT-TTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-TEEEE--EE--TTEEEEEEE-SS-----------------E
T ss_pred             -cc-ccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-CeEEE--EE--cCCcceEEEcCCce---------------E
Confidence             00 00000 00111122357888888866 3333433 35554  22  12222222222221               3


Q ss_pred             eEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          389 ECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       389 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      =+...+..+.|.....|+.|..+.+...
T Consensus       237 llgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  237 LLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             EEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             EEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            4666776677888888888888877643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.55  E-value=0.035  Score=50.70  Aligned_cols=116  Identities=15%  Similarity=0.094  Sum_probs=69.2

Q ss_pred             CCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721          216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (457)
Q Consensus       216 ~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw  295 (457)
                      ...++|++++--  +..|+++.++.|.+|++.........-      .......+.++...  + ++|++|.....+.++
T Consensus        86 ~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~------~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   86 EVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKA------FYDSPFYITSLSVF--K-NYILVGDAMKSVSLL  154 (321)
T ss_dssp             EESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEE------EE-BSSSEEEEEEE--T-TEEEEEESSSSEEEE
T ss_pred             eecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhh------eecceEEEEEEecc--c-cEEEEEEcccCEEEE
Confidence            345678888766  445878877999999998443133221      11122356666554  4 689999988888887


Q ss_pred             EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEecc
Q 012721          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  356 (457)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~  356 (457)
                      ..+.....   ...+..   .        .....++++.|-++++.++.++. |.+.++...
T Consensus       155 ~~~~~~~~---l~~va~---d--------~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  155 RYDEENNK---LILVAR---D--------YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEETTTE----EEEEEE---E--------SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEccCCE---EEEEEe---c--------CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            55432110   011111   0        11246888999877777777765 999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.52  E-value=0.0052  Score=52.31  Aligned_cols=87  Identities=10%  Similarity=0.024  Sum_probs=54.0

Q ss_pred             CCCCeeEEEeCCCCCEEEEe-CCCe----EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCe
Q 012721          217 HDFNINSISNNSDCETFVSA-DDLR----INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  291 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~-~d~~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~  291 (457)
                      +...|..++..+||..++.+ +.|.    --+--....++.++.+++++.+.......|-+|+.+.+.....+++-..+.
T Consensus       224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~  303 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR  303 (366)
T ss_pred             hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence            44567888888888887776 4332    111122224555666555544444555678888888765244445556677


Q ss_pred             EEEEEccCCeee
Q 012721          292 VRLVDMRQSALC  303 (457)
Q Consensus       292 i~lwd~~~~~~~  303 (457)
                      ..+||..++...
T Consensus       304 ~vi~da~tG~vv  315 (366)
T COG3490         304 AVIWDAATGAVV  315 (366)
T ss_pred             EEEEEcCCCcEE
Confidence            889999998644

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.43  E-value=0.014  Score=42.56  Aligned_cols=64  Identities=19%  Similarity=0.178  Sum_probs=41.2

Q ss_pred             CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEe---cCCccEEEEEccCCeEE
Q 012721          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFVR  293 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~---p~~~~~l~~~~~dg~i~  293 (457)
                      ...|.++.-... ..|+.+ .+|+|-+|+-.  .+.+++   +      ....++++.+.   -+|...|++|-.+|.|-
T Consensus        42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi---K------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI---K------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee---c------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            346777777655 568888 99999999864  333332   2      22335666553   34445899999999874

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00089  Score=62.89  Aligned_cols=76  Identities=21%  Similarity=0.239  Sum_probs=61.2

Q ss_pred             CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE-EEEEecCCccEEEEEccCCeEEEE
Q 012721          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLV  295 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~~~p~~~~~l~~~~~dg~i~lw  295 (457)
                      ...+.-+.|+|.-.++|.+ .+|.|-+..++ -.+.. +       +.-+...++ +++|.||| ++||+|-.||+|++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlw-t-------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLW-T-------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLH   89 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeE-e-------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEE
Confidence            3467789999999999999 99999999887 33332 2       233445555 99999999 999999999999999


Q ss_pred             EccCCeee
Q 012721          296 DMRQSALC  303 (457)
Q Consensus       296 d~~~~~~~  303 (457)
                      |+.++...
T Consensus        90 Dve~~~~l   97 (665)
T KOG4640|consen   90 DVEKGGRL   97 (665)
T ss_pred             EccCCCce
Confidence            99998654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.34  E-value=0.11  Score=47.77  Aligned_cols=118  Identities=12%  Similarity=0.154  Sum_probs=52.6

Q ss_pred             CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEe--cCCccEEEEEccCCeEEEEEc-cCCeeecccccccccc
Q 012721          237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDA  313 (457)
Q Consensus       237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~l~~~~~dg~i~lwd~-~~~~~~~~~~~~~~~~  313 (457)
                      ....+.+||+. ..+.++++++..     ....+..|.|.  |+...=++.+-...+|..|-- ..++-...  ++.+..
T Consensus       220 yG~~l~vWD~~-~r~~~Q~idLg~-----~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~--kVi~ip  291 (461)
T PF05694_consen  220 YGHSLHVWDWS-TRKLLQTIDLGE-----EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE--KVIDIP  291 (461)
T ss_dssp             S--EEEEEETT-TTEEEEEEES-T-----TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE--EEEEE-
T ss_pred             ccCeEEEEECC-CCcEeeEEecCC-----CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee--EEEECC
Confidence            45789999999 777888876542     22335566664  433122333334445544433 33321111  111110


Q ss_pred             c------cccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCce
Q 012721          314 A------ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPV  362 (457)
Q Consensus       314 ~------~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~  362 (457)
                      .      ..+.....+..-..-|+.+..|.|.++|..++-  |.|+.||+..+..+.
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk  348 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK  348 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred             CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence            0      000111112222356899999999999998763  999999997544443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0012  Score=62.08  Aligned_cols=93  Identities=15%  Similarity=0.074  Sum_probs=70.9

Q ss_pred             cceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                      ..+..+.|+|.-.++|.+.. |.|-++.+.  .+.+.++..+...+.              .+++|.|||+.||.|-.||
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~--------------~sL~W~~DGkllaVg~kdG   84 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVT--------------ASLCWRPDGKLLAVGFKDG   84 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccc--------------eeeeecCCCCEEEEEecCC
Confidence            46889999999999999876 888888775  455555554444331              3899999999999999999


Q ss_pred             cEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721          407 LLRIFSHGVGSAGGITVEAGKNENRKPILQ  436 (457)
Q Consensus       407 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~  436 (457)
                      +|++.|+.++.........-..++.++.|.
T Consensus        85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eEEEEEccCCCceeccccccccchheeecc
Confidence            999999999854443334445677777775

>smart00320 WD40 WD40 repeats

Probab=97.29  E-value=0.00048  Score=39.59  Aligned_cols=30  Identities=27%  Similarity=0.586  Sum_probs=28.3

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~   60 (457)
                      |...|.+++|++++.++++++.|+.+++|+
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            778999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.27  E-value=0.00059  Score=66.18  Aligned_cols=111  Identities=14%  Similarity=0.058  Sum_probs=79.2

Q ss_pred             CceEEEEEecCCccEEEEEc----cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          268 EVITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~----~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      +..+-.+|+|.. .++++++    ..|.|.||- .+|+... + ....                -.+++++|+|..-.|+
T Consensus        16 avsti~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPqr-~-Vt~P----------------~hatSLCWHpe~~vLa   75 (1416)
T KOG3617|consen   16 AVSTISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQR-D-VTYP----------------VHATSLCWHPEEFVLA   75 (1416)
T ss_pred             ccccccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCCc-c-cccc----------------eehhhhccChHHHHHh
Confidence            344556899998 8888876    457888873 4443210 0 0111                2367799999988888


Q ss_pred             EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      .|-. |.+.+|.... .+.-.....|...+               .-+.||++|..|+++..-|.|.+|...
T Consensus        76 ~gwe~g~~~v~~~~~-~e~htv~~th~a~i---------------~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   76 QGWEMGVSDVQKTNT-TETHTVVETHPAPI---------------QGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hccccceeEEEecCC-ceeeeeccCCCCCc---------------eeEEecCCCCeEEEcCCCceeEEEEee
Confidence            8876 9999999864 33333334455443               579999999999999999999999876

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.14  Score=45.89  Aligned_cols=127  Identities=11%  Similarity=0.087  Sum_probs=74.2

Q ss_pred             CeeEEEeCCCCCEEEEe-C-----------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc
Q 012721          220 NINSISNNSDCETFVSA-D-----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  287 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~  287 (457)
                      ..+.+...|+|.+.++. .           -|.|+.+|..  +...+.       +..+-...+.|+|+||+ +.|..+.
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~~~l-------~~~~~~~~NGla~SpDg-~tly~aD  181 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD--GGVVRL-------LDDDLTIPNGLAFSPDG-KTLYVAD  181 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC--CCEEEe-------ecCcEEecCceEECCCC-CEEEEEe
Confidence            34556667777666654 3           1334444432  333332       23444556789999999 6666655


Q ss_pred             -cCCeEEEEEccC--CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCce
Q 012721          288 -SRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPV  362 (457)
Q Consensus       288 -~dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~  362 (457)
                       ..+.|.-|++..  +.....  ..          ...+....+..-.++...+|.+-+++-.  +.|.+|+.+  ++++
T Consensus       182 T~~~~i~r~~~d~~~g~~~~~--~~----------~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~  247 (307)
T COG3386         182 TPANRIHRYDLDPATGPIGGR--RG----------FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLL  247 (307)
T ss_pred             CCCCeEEEEecCcccCccCCc--ce----------EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEE
Confidence             458888887763  111100  00          0111122355667788888888865433  499999986  7888


Q ss_pred             eEeeeccc
Q 012721          363 ATFKIHEH  370 (457)
Q Consensus       363 ~~~~~~~~  370 (457)
                      ..+..+..
T Consensus       248 ~~i~lP~~  255 (307)
T COG3386         248 GEIKLPVK  255 (307)
T ss_pred             EEEECCCC
Confidence            88877643

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.19  E-value=0.25  Score=48.00  Aligned_cols=29  Identities=17%  Similarity=0.209  Sum_probs=22.7

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          395 DGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       395 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      .+..|+.++.||.|+.+|.++|+ .+-..+
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~-~lW~~~  433 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGK-ELWKFR  433 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCc-eeeEEE
Confidence            55788889999999999999994 444443

The alignment model contains an 8-bladed beta-propeller.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.18  E-value=0.0017  Score=39.40  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=29.2

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETV   62 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~   62 (457)
                      -...|.+++|+|..++||.|..+|.|.|+++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            35679999999999999999999999999984

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.13  E-value=0.015  Score=58.27  Aligned_cols=144  Identities=13%  Similarity=0.111  Sum_probs=87.8

Q ss_pred             CCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCC------ccEEEEEccCCeEEEEEccCC
Q 012721          229 DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY------CNLLAYSSSRGFVRLVDMRQS  300 (457)
Q Consensus       229 ~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~------~~~l~~~~~dg~i~lwd~~~~  300 (457)
                      +..+|+..  ....|+-.|++ .++.+..|++.      ...+|..++  |+.      +..-+.|-.++.+..||.|..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe-~GKVV~eW~~~------~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~  562 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLE-RGKVVEEWKVH------DDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLS  562 (794)
T ss_pred             ccceEeecCCCCCceEEEecC-CCcEEEEeecC------CCcceeEec--ccccccccCCCceEEEECCCceEEeccCCC
Confidence            34454544  56889999999 78888776443      112244443  321      134556777888999999964


Q ss_pred             e--eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeecccccccccc
Q 012721          301 A--LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  377 (457)
Q Consensus       301 ~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  377 (457)
                      .  +.....+.+              ......+|++-+.+| +||.|+. |.||+||- .+.+.-..+.+-..++     
T Consensus       563 ~~k~v~~~~k~Y--------------~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI-----  621 (794)
T PF08553_consen  563 GNKLVDSQSKQY--------------SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPI-----  621 (794)
T ss_pred             CCceeecccccc--------------ccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCe-----
Confidence            3  111111111              113457788888777 6676665 99999994 3222222233333333     


Q ss_pred             ccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          378 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       378 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                                +.++.+.||++|++.+. ..+.|++.
T Consensus       622 ----------~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  622 ----------IGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             ----------eEEEecCCCcEEEEeec-ceEEEEEE
Confidence                      79999999999998776 45666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.13  E-value=0.25  Score=46.68  Aligned_cols=50  Identities=16%  Similarity=0.094  Sum_probs=35.1

Q ss_pred             ceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC-CCcceeeeeccC
Q 012721          388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQAA  438 (457)
Q Consensus       388 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~p~  438 (457)
                      ..++.||++++||.-..+|.+.+....-. +....+.-. ..+...+.|-.+
T Consensus       220 ~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  220 IKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             EEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcEEEEECC
Confidence            68999999999999999999988876544 233333322 345566666654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>smart00320 WD40 WD40 repeats

Probab=97.13  E-value=0.0016  Score=37.24  Aligned_cols=28  Identities=32%  Similarity=0.735  Sum_probs=25.1

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEE
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWK  143 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~  143 (457)
                      ..|.++.|  .+++..+++++.|+.+++|+
T Consensus        13 ~~i~~~~~--~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       13 GPVTSVAF--SPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CceeEEEE--CCCCCEEEEecCCCeEEEcC
Confidence            78999999  56778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.24  Score=46.31  Aligned_cols=180  Identities=11%  Similarity=0.080  Sum_probs=110.5

Q ss_pred             CeeEEEeCCCCCEEEEe-C---CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721          220 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw  295 (457)
                      .-..++++|+++.+..+ .   ++.+.+.|.. .........      .+. .+ ..+++.|+|...+++-..++.|.+.
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-t~~~~~~~~------vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi  187 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-TNKVTATIP------VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVI  187 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCC-CCeEEEEEe------cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence            44578999999888876 4   6888888887 344443321      111 22 8899999993355555588999999


Q ss_pred             EccCCeeec-cccccccccccccCcccceeccccceEEEEEccCCCeEEEEec----CcEEEEeccCCCCceeE-eeecc
Q 012721          296 DMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIHE  369 (457)
Q Consensus       296 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----~~i~~wd~~~~~~~~~~-~~~~~  369 (457)
                      |........ ........              ...-..+.++|+|.++....+    +.+...|... +..... .....
T Consensus       188 ~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~  252 (381)
T COG3391         188 DTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGS  252 (381)
T ss_pred             eCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEecccccc
Confidence            977654331 00000111              123467889999998776543    4788888764 333332 22222


Q ss_pred             ccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCCceeeEEecCCC---cceeeeeccCC
Q 012721          370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKN---ENRKPILQAAP  439 (457)
Q Consensus       370 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~---~v~~~~~~p~~  439 (457)
                      . .+              ..+..+|+|.++.+... .+.+.+-|..+. ...........   ....+++.+..
T Consensus       253 ~-~~--------------~~v~~~p~g~~~yv~~~~~~~V~vid~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         253 G-AP--------------RGVAVDPAGKAAYVANSQGGTVSVIDGATD-RVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             C-CC--------------CceeECCCCCEEEEEecCCCeEEEEeCCCC-ceeeeecccccccccceeccceeec
Confidence            1 11              46899999999988754 488999998887 33343333322   34455555443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.07  E-value=0.12  Score=47.30  Aligned_cols=136  Identities=12%  Similarity=0.053  Sum_probs=80.2

Q ss_pred             CeEEEEEcCCCc---ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCe-eeccccccccccc
Q 012721          239 LRINLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAA  314 (457)
Q Consensus       239 ~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~  314 (457)
                      |.|.++++...+   ..++.+.     -....++|++++-- .+ . |+++ ..+.|.+|++...+ ...  ...+..  
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~-----~~~~~g~V~ai~~~-~~-~-lv~~-~g~~l~v~~l~~~~~l~~--~~~~~~--  128 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIH-----STEVKGPVTAICSF-NG-R-LVVA-VGNKLYVYDLDNSKTLLK--KAFYDS--  128 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEE-----EEEESS-EEEEEEE-TT-E-EEEE-ETTEEEEEEEETTSSEEE--EEEE-B--
T ss_pred             cEEEEEEEEcccccceEEEEEE-----EEeecCcceEhhhh-CC-E-EEEe-ecCEEEEEEccCcccchh--hheecc--
Confidence            889999998421   1222211     12345789988866 33 4 4433 35889999998875 221  011111  


Q ss_pred             cccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc
Q 012721          315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  393 (457)
Q Consensus       315 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  393 (457)
                                  ...+.++...  +.+|+.|+. ..+.++..+.....+..+.......             .++++.|-
T Consensus       129 ------------~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l  181 (321)
T PF03178_consen  129 ------------PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFL  181 (321)
T ss_dssp             ------------SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE
T ss_pred             ------------eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEe
Confidence                        1245555554  668998886 8888886654334344443322221             12678888


Q ss_pred             CCCcEEEEEeCCCcEEEEecC
Q 012721          394 GDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       394 ~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      +|+..++.+..+|.+.++...
T Consensus       182 ~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  182 VDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -SSSEEEEEETTSEEEEEEE-
T ss_pred             cCCcEEEEEcCCCeEEEEEEC
Confidence            676799999999999999886

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.021  Score=53.03  Aligned_cols=101  Identities=15%  Similarity=0.158  Sum_probs=67.9

Q ss_pred             EEe-CCCeEEEEEcCCCcce-eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccc
Q 012721          234 VSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR  311 (457)
Q Consensus       234 ~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~  311 (457)
                      +.| .|+.|.-||++..+.. +.....  +.+. ......|++-..+|  +|++||.+|.||+||- .+...        
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~--kqy~-~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A--------  463 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQS--KQYS-TKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA--------  463 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeec--cccc-cccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh--------
Confidence            347 8999999999855542 211100  1111 12345666666665  8999999999999996 33211        


Q ss_pred             ccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEecc
Q 012721          312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  356 (457)
Q Consensus       312 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~  356 (457)
                              +..+.+...+|..+..+.+|++|++.++..+.+.++.
T Consensus       464 --------KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  464 --------KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             --------hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence                    1223445678999999999999998888777777764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.05  E-value=0.21  Score=44.44  Aligned_cols=157  Identities=15%  Similarity=0.140  Sum_probs=82.0

Q ss_pred             CCCEEEEeCCCeEEEEEcCCCc----ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeec
Q 012721          229 DCETFVSADDLRINLWNLEISD----QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD  304 (457)
Q Consensus       229 ~~~~l~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~  304 (457)
                      ....|+.+....|.+|......    ...+.+.        ....+.+++|.+   +.|+.|..++ ..+.|+.++... 
T Consensus       104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--------lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~-  170 (275)
T PF00780_consen  104 GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--------LPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPS-  170 (275)
T ss_pred             cceEEEEEECCEEEEEEEECCcccccceeEEEE--------cCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCce-
Confidence            4455666666699998887421    1222221        237788999994   4577776555 688898865432 


Q ss_pred             cccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCcee--EeeeccccccccccccCCC
Q 012721          305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNND  382 (457)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  382 (457)
                         .++.. ...............++..+.. +++++|++.++ .-.+.|..  +++..  .+.-...+           
T Consensus       171 ---~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~-~g~fv~~~--G~~~r~~~i~W~~~p-----------  231 (275)
T PF00780_consen  171 ---ELLDP-SDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYDN-IGVFVNKN--GEPSRKSTIQWSSAP-----------  231 (275)
T ss_pred             ---EEeCc-cCCcchhhhcccCCCceEEEEe-CCceEEEEecc-eEEEEcCC--CCcCcccEEEcCCch-----------
Confidence               22211 0000000000011123333333 34677776543 22334443  44332  22222222           


Q ss_pred             CccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          383 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       383 ~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                           .++++  ...||+..+. +.|.||++.++ +..+++...
T Consensus       232 -----~~~~~--~~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~  266 (275)
T PF00780_consen  232 -----QSVAY--SSPYLIAFSS-NSIEVRSLETG-ELVQTIPLP  266 (275)
T ss_pred             -----hEEEE--ECCEEEEECC-CEEEEEECcCC-cEEEEEECC
Confidence                 35555  3457877666 45999999999 667776644

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.99  E-value=0.34  Score=46.05  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=25.2

Q ss_pred             ceEEEEECCCCCEEEEE-eCCC----eEEEEEecCCcc
Q 012721           34 IVSAIEFDKTGDYLAVG-DRGG----RVILFETVGGKN   66 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg-~~dg----~i~iw~~~~~~~   66 (457)
                      .+...++||||++||.+ +..|    .|+++|+.+++.
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~  162 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF  162 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence            45578999999999865 3333    599999998864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.23  Score=46.54  Aligned_cols=180  Identities=11%  Similarity=0.106  Sum_probs=114.3

Q ss_pred             eeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc---CCeEEEE
Q 012721          221 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLV  295 (457)
Q Consensus       221 v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---dg~i~lw  295 (457)
                      -..++.++.+..++. . .++.|.+.|.. .........      .+  .....++++|++ +.+..+..   ++++.+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~~~~~~~------vG--~~P~~~~~~~~~-~~vYV~n~~~~~~~vsvi  145 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TNTVLGSIP------VG--LGPVGLAVDPDG-KYVYVANAGNGNNTVSVI  145 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCc-ccceeeEee------ec--cCCceEEECCCC-CEEEEEecccCCceEEEE
Confidence            346778888875554 4 78999999977 333433321      11  256788999999 55555443   6889999


Q ss_pred             EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cCcEEEEeccCCCCcee-----Eeeec
Q 012721          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA-----TFKIH  368 (457)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~~~~~~-----~~~~~  368 (457)
                      |..+.+...   ....+              ..+ ..++++|+|..+....  ++.|.+.|... .....     .....
T Consensus       146 d~~t~~~~~---~~~vG--------------~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~  206 (381)
T COG3391         146 DAATNKVTA---TIPVG--------------NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVG  206 (381)
T ss_pred             eCCCCeEEE---EEecC--------------CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccC
Confidence            988876542   11111              123 7899999999887665  49999999753 22221     11112


Q ss_pred             cccccccccccCCCCccccceEEEcCCCcEEEEEeCC---CcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      ..+                ..+.++|+|.++......   +.+...|..++................+..+|++......
T Consensus       207 ~~P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         207 TGP----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA  270 (381)
T ss_pred             CCC----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence            221                478999999977765544   5899999888732222122222145677888888877663

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.59  E-value=0.57  Score=42.84  Aligned_cols=155  Identities=10%  Similarity=0.049  Sum_probs=72.6

Q ss_pred             EEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEe--cCCccEEEEEc---c---------
Q 012721          224 ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSS---S---------  288 (457)
Q Consensus       224 ~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~l~~~~---~---------  288 (457)
                      ..++|+.+.++.. .+..|+-.|++ ..+...++.+       ....+-...|.  .++ ..++-.-   .         
T Consensus        86 ~~~s~~~~~~~Yv~~~~~l~~vdL~-T~e~~~vy~~-------p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~  156 (386)
T PF14583_consen   86 GFLSPDDRALYYVKNGRSLRRVDLD-TLEERVVYEV-------PDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWK  156 (386)
T ss_dssp             -EE-TTSSEEEEEETTTEEEEEETT-T--EEEEEE---------TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHH
T ss_pred             eEEecCCCeEEEEECCCeEEEEECC-cCcEEEEEEC-------CcccccccceeeCCCc-cEEEEEEEeehhccCccccH
Confidence            4566777887766 77788888988 4444344322       23444334453  333 4433221   1         


Q ss_pred             ----------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE-Eec---CcE--EE
Q 012721          289 ----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY---MNL--KL  352 (457)
Q Consensus       289 ----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~---~~i--~~  352 (457)
                                ...|.-.|+.+++..    .++..              ...+..+.|+|...-+++ |-+   ..|  ||
T Consensus       157 ~f~e~~~a~p~~~i~~idl~tG~~~----~v~~~--------------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~Ri  218 (386)
T PF14583_consen  157 GFREFYEARPHCRIFTIDLKTGERK----VVFED--------------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRI  218 (386)
T ss_dssp             HHHHHHHC---EEEEEEETTT--EE----EEEEE--------------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SE
T ss_pred             HHHHHHhhCCCceEEEEECCCCcee----EEEec--------------CccccCcccCCCCCCEEEEeccCCcceeceEE
Confidence                      112333344444321    22222              467888999997555443 422   333  78


Q ss_pred             EeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-----CCCcEEEEecCCCCc
Q 012721          353 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIFSHGVGSA  418 (457)
Q Consensus       353 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-----~dg~i~iw~~~~~~~  418 (457)
                      |-+++.+.....+..+....             .+..=-|.|||..|.--+     .+..|.-+|+.+++.
T Consensus       219 W~i~~dg~~~~~v~~~~~~e-------------~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  219 WTINTDGSNVKKVHRRMEGE-------------SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             EEEETTS---EESS---TTE-------------EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred             EEEEcCCCcceeeecCCCCc-------------ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence            88876666665554443221             013456899998776433     244677788888843

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.57  E-value=0.13  Score=50.80  Aligned_cols=187  Identities=10%  Similarity=0.037  Sum_probs=94.0

Q ss_pred             CCeeEEEeCCCCCEEEEe-C------CC--eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC
Q 012721          219 FNINSISNNSDCETFVSA-D------DL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  289 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~-~------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d  289 (457)
                      ..+...+++|+|+.++.. .      |.  .|.+++..  +....+       ..+.  ..+...|+|+| ..|++....
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~l-------t~g~--~~t~PsWspDG-~~lw~v~dg  417 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQV-------LEGH--SLTRPSWSLDA-DAVWVVVDG  417 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccceee-------ecCC--CCCCceECCCC-CceEEEecC
Confidence            467788999999988764 2      33  45555543  333222       1222  36778999998 766666433


Q ss_pred             -CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEecc--CCCCceeEee
Q 012721          290 -GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR--MDSTPVATFK  366 (457)
Q Consensus       290 -g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~--~~~~~~~~~~  366 (457)
                       ..+++.+-......    .....  +......   .....|..+.|||||..|+.-.++.|++=-+.  ..+.  ..+.
T Consensus       418 ~~~~~v~~~~~~gql----~~~~v--d~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~  486 (591)
T PRK13616        418 NTVVRVIRDPATGQL----ARTPV--DASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALT  486 (591)
T ss_pred             cceEEEeccCCCceE----EEEec--cCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeec
Confidence             22333322111000    00010  0000000   12357999999999999987656777763221  1232  1221


Q ss_pred             eccccccccccccCCCCccc-cceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec--CCCcceeeeeccC
Q 012721          367 IHEHLRPKLCDLYNNDSIFD-KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA--GKNENRKPILQAA  438 (457)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--~~~~v~~~~~~p~  438 (457)
                      .......         ...+ +.++.|..++.++ .+..++...+|.+.-.......+.+  ...++..++-+++
T Consensus       487 ~~~~l~~---------~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        487 NPREVGP---------GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS  551 (591)
T ss_pred             ccEEeec---------ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence            0000000         0001 1478999999855 5555554555655432222222233  3666777766653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.54  E-value=0.19  Score=42.52  Aligned_cols=113  Identities=16%  Similarity=0.106  Sum_probs=77.6

Q ss_pred             ecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEe
Q 012721          276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD  354 (457)
Q Consensus       276 ~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd  354 (457)
                      .++...+++.|+..+.+.-.|..+++..      |+..            -...+.+-+.- -|.+++.|.. |.+++.+
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~------We~i------------lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~   79 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLI------WEAI------------LGVRIECSAIV-VGDFVVLGCYSGGLYFLC   79 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEE------eehh------------hCceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence            3444478899999999999999998643      2210            00122221111 3778888887 9999999


Q ss_pred             ccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          355 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      .++ +.....+..-+..-               ......+++..|..|+.|+..+..|.++. ......+
T Consensus        80 ~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~yalD~~~~-~cVyksk  132 (354)
T KOG4649|consen   80 VKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSK  132 (354)
T ss_pred             ecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcEEEeccccc-ceEEecc
Confidence            987 66665555443321               35677789999999999999999999887 4555544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.48  E-value=0.83  Score=43.46  Aligned_cols=192  Identities=14%  Similarity=-0.023  Sum_probs=88.3

Q ss_pred             EEEeCCCCCEEEEe-C-----------CCeEEEEEcCCCcce-eeeeecCCCcccCCC-C-ceEEEEEecCCccEEEEEc
Q 012721          223 SISNNSDCETFVSA-D-----------DLRINLWNLEISDQC-FNIVDMKPSNMDDLT-E-VITSAEFHPIYCNLLAYSS  287 (457)
Q Consensus       223 ~~~~~~~~~~l~~~-~-----------d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~-~-~i~~v~~~p~~~~~l~~~~  287 (457)
                      .+.|.++++.|+.. .           ...|+.|.+.+.... ..+       +++.. . ....+..++++ ++|+..+
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lv-------fe~~~~~~~~~~~~~s~d~-~~l~i~~  245 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELV-------FEEPDEPFWFVSVSRSKDG-RYLFISS  245 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEE-------EC-TTCTTSEEEEEE-TTS-SEEEEEE
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeE-------EeecCCCcEEEEEEecCcc-cEEEEEE
Confidence            38899987776553 2           234788888743322 223       22222 2 26678899999 7665543


Q ss_pred             c---C-CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c---CcEEEEeccCCC
Q 012721          288 S---R-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDS  359 (457)
Q Consensus       288 ~---d-g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~---~~i~~wd~~~~~  359 (457)
                      .   + ..+.+.|+..+.......+.+.             .....+....-+..+.+++... +   +.|...++....
T Consensus       246 ~~~~~~s~v~~~d~~~~~~~~~~~~~l~-------------~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  246 SSGTSESEVYLLDLDDGGSPDAKPKLLS-------------PREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             ESSSSEEEEEEEECCCTTTSS-SEEEEE-------------ESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             EccccCCeEEEEeccccCCCcCCcEEEe-------------CCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence            2   2 3477777766410000001111             1112232222222444444332 2   667667776422


Q ss_pred             C--ceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCC--cEEEEecCCCCceeeEEecCCCcceeee
Q 012721          360 T--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPI  434 (457)
Q Consensus       360 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~  434 (457)
                      .  ....+..+...+               .-..+...+. +++..-.++  .|+++++..+...........+.+..+.
T Consensus       313 ~~~~~~~l~~~~~~~---------------~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~  377 (414)
T PF02897_consen  313 PAEWWTVLIPEDEDV---------------SLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVS  377 (414)
T ss_dssp             GGGEEEEEE--SSSE---------------EEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEE
T ss_pred             cccceeEEcCCCCce---------------eEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccC
Confidence            1  122333333311               1122333343 444455554  5888999833133222223344456666


Q ss_pred             eccCCcceeccccccc
Q 012721          435 LQAAPRARRSSLSNLT  450 (457)
Q Consensus       435 ~~p~~~~~~~~~~~~~  450 (457)
                      ..++.+..+..++++.
T Consensus       378 ~~~~~~~~~~~~ss~~  393 (414)
T PF02897_consen  378 GDFDSDELRFSYSSFT  393 (414)
T ss_dssp             S-TT-SEEEEEEEETT
T ss_pred             CCCCCCEEEEEEeCCC
Confidence            6677777777666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.44  E-value=0.54  Score=40.83  Aligned_cols=184  Identities=11%  Similarity=0.171  Sum_probs=107.7

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|.++.|  +|+.+.|++......-.||=..+|+....+.+...                                   
T Consensus        86 ~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-----------------------------------  128 (316)
T COG3204          86 ANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-----------------------------------  128 (316)
T ss_pred             ccccceee--CCCcceEEEecCCCceEEEEecCCceEEEeccccc-----------------------------------
Confidence            55999999  67877888777777777777777877766553321                                   


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeee--ecCCCcccCCCCce
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV--DMKPSNMDDLTEVI  270 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~i  270 (457)
                                               ...-.+++..++++.++- .++.+.++.+......+..-  .++...........
T Consensus       129 -------------------------~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf  183 (316)
T COG3204         129 -------------------------SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF  183 (316)
T ss_pred             -------------------------CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCc
Confidence                                     123356777777777777 89999999887443332211  11111122225567


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccc-ccccCcccceeccccceEEEEEccCCCeEE-EEec-
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA-AESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY-  347 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~-  347 (457)
                      -.++|.|.. ..|..+-+-.=+.||.+.....      .+..| ...+....  .-.-..|+++.|++....|. -+.+ 
T Consensus       184 EGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~------~l~~~~~~~~~~~~--~~f~~DvSgl~~~~~~~~LLVLS~ES  254 (316)
T COG3204         184 EGLAWDPVD-HRLFVAKERNPIGIFEVTQSPS------SLSVHASLDPTADR--DLFVLDVSGLEFNAITNSLLVLSDES  254 (316)
T ss_pred             eeeecCCCC-ceEEEEEccCCcEEEEEecCCc------ccccccccCccccc--ceEeeccccceecCCCCcEEEEecCC
Confidence            889999998 7777777777677777664321      11110 00000000  00114578889987544444 4443 


Q ss_pred             CcEEEEeccCCCCceeEeeeccc
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                      +.+.-.|..  +.++..+.-+.+
T Consensus       255 r~l~Evd~~--G~~~~~lsL~~g  275 (316)
T COG3204         255 RRLLEVDLS--GEVIELLSLTKG  275 (316)
T ss_pred             ceEEEEecC--CCeeeeEEeccC
Confidence            666666664  555555544433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.40  E-value=0.015  Score=35.27  Aligned_cols=30  Identities=17%  Similarity=0.577  Sum_probs=27.1

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEec
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  145 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~  145 (457)
                      ..|..++|  +|..++||.++.||.|.+++++
T Consensus        12 ~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSW--CPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEE--CCCCCEEEEEECCCeEEEEECC
Confidence            67999999  5788899999999999999984

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.33  E-value=0.75  Score=41.29  Aligned_cols=162  Identities=11%  Similarity=0.063  Sum_probs=89.2

Q ss_pred             EEEeCCCCCEEEE----------e-CCCeEEEEEcCCCcceeeeeecCCC-cccCCCCceEEEEEecCCccEEEEEc--c
Q 012721          223 SISNNSDCETFVS----------A-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSS--S  288 (457)
Q Consensus       223 ~~~~~~~~~~l~~----------~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~p~~~~~l~~~~--~  288 (457)
                      .+..+|+++.+++          | ..-.|.+||.. .-....-+.+++. ... .......++++.++ +++++..  -
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~-~~~~~~~~~ls~dg-k~~~V~N~TP  116 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQ-VVPYKNMFALSADG-KFLYVQNFTP  116 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B---BS--GGGEEE-TTS-SEEEEEEESS
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchhe-ecccccceEEccCC-cEEEEEccCC
Confidence            4567899988876          3 34579999998 4444444444432 111 11122345778888 7666553  3


Q ss_pred             CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeec
Q 012721          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIH  368 (457)
Q Consensus       289 dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~  368 (457)
                      ...|.|.|+..++..    ..+..               .....+-=+++..+...|.||.+.-..+...++.....   
T Consensus       117 a~SVtVVDl~~~kvv----~ei~~---------------PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~---  174 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVV----GEIDT---------------PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS---  174 (342)
T ss_dssp             SEEEEEEETTTTEEE----EEEEG---------------TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE---
T ss_pred             CCeEEEEECCCCcee----eeecC---------------CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee---
Confidence            456888898887643    22222               22333332344456666778999888887667765222   


Q ss_pred             cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      ...-     .-+.|.+|  ..-++...+..++--+.+|.|+--|+...
T Consensus       175 t~~F-----~~~~dp~f--~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~  215 (342)
T PF06433_consen  175 TKVF-----DPDDDPLF--EHPAYSRDGGRLYFVSYEGNVYSADLSGD  215 (342)
T ss_dssp             EEES-----STTTS-B---S--EEETTTTEEEEEBTTSEEEEEEETTS
T ss_pred             cccc-----CCCCcccc--cccceECCCCeEEEEecCCEEEEEeccCC
Confidence            1110     00112222  34556666666666888898888887765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.32  E-value=0.64  Score=40.42  Aligned_cols=172  Identities=13%  Similarity=0.141  Sum_probs=103.9

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc-CCccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL  110 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~  110 (457)
                      +..|+++.|+|+.+.|++......-.||=...|+.+       ++                  .-+.+ |+         
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdli-------rt------------------iPL~g~~D---------  130 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLI-------RT------------------IPLTGFSD---------  130 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceE-------EE------------------ecccccCC---------
Confidence            455999999999988888777776666655555532       11                  11222 22         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                           --.|.|.  .+|.+.++--.++.+.++.+..+.........                                  
T Consensus       131 -----pE~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~----------------------------------  169 (316)
T COG3204         131 -----PETIEYI--GGNQFVIVDERDRALYLFTVDADTTVISAKVQ----------------------------------  169 (316)
T ss_pred             -----hhHeEEe--cCCEEEEEehhcceEEEEEEcCCccEEeccce----------------------------------
Confidence                 2346673  56666666678888988887765332221100                                  


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC---
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---  266 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---  266 (457)
                                      .-++... ...+...-.++|.|..+.|..+ .-+-+.||.+.........-.     ...+   
T Consensus       170 ----------------~i~L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~-----~~~~~~~  227 (316)
T COG3204         170 ----------------KIPLGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA-----SLDPTAD  227 (316)
T ss_pred             ----------------EEecccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccc-----ccCcccc
Confidence                            0001111 1115567789999999888888 777788877762221221100     0111   


Q ss_pred             ----CCceEEEEEecCCccEEEEEccCCeEEEEEccCC
Q 012721          267 ----TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (457)
Q Consensus       267 ----~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~  300 (457)
                          -..+.++.|++....+|+.+.+++.+.-.|....
T Consensus       228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             cceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence                1346677888765478888888998888887654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.22  E-value=0.56  Score=41.66  Aligned_cols=155  Identities=14%  Similarity=0.097  Sum_probs=87.5

Q ss_pred             CCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccc
Q 012721          228 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS  306 (457)
Q Consensus       228 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~  306 (457)
                      ..++.|+.| .+| |++++........++.         +...|..+...|+- +.|++-+ |+.+.++++..-......
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~   72 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS   72 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence            357788888 777 9999984233333332         22339999999987 5555543 599999999875432110


Q ss_pred             cccccccccccCcccceeccccceEEEE---EccCCCeEEEEecCcEEEEeccCC---C-CceeEeeecccccccccccc
Q 012721          307 ARILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRDYMNLKLWDIRMD---S-TPVATFKIHEHLRPKLCDLY  379 (457)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~s~~g~~l~s~~~~~i~~wd~~~~---~-~~~~~~~~~~~~~~~~~~~~  379 (457)
                      .. ... ...... .........+...+   -.....+|+.+...+|.+|.....   . +..+.+......        
T Consensus        73 ~~-~~~-~~~~~~-~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~--------  141 (275)
T PF00780_consen   73 AP-LAF-PKSRSL-PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP--------  141 (275)
T ss_pred             cc-ccc-cccccc-cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc--------
Confidence            00 000 000000 00000112344443   223345666776689999888642   1 344555544433        


Q ss_pred             CCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       380 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                              ..++|.  ++.|+.|..+ ...+.|+.++
T Consensus       142 --------~~i~~~--~~~i~v~~~~-~f~~idl~~~  167 (275)
T PF00780_consen  142 --------SSIAFL--GNKICVGTSK-GFYLIDLNTG  167 (275)
T ss_pred             --------EEEEEe--CCEEEEEeCC-ceEEEecCCC
Confidence                    578887  5567777654 4778899877

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=0.029  Score=56.56  Aligned_cols=102  Identities=16%  Similarity=0.245  Sum_probs=72.4

Q ss_pred             cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCC
Q 012721          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  359 (457)
Q Consensus       281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~  359 (457)
                      ..++.|+..|.+...|+... +.    ....+           ..-.++|++++|+.+|+.++.|- +|.|.+||+.. +
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~n-L~----~~~~n-----------e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~  162 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGN-LG----PLHQN-----------ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A  162 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcc-cc----hhhcC-----------CccCCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence            57889999999999888764 11    00111           01136899999999999999984 59999999975 7


Q ss_pred             CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                      ++++.+..+..+...            +..+.+..++..++++..-|.  +|++
T Consensus       163 k~l~~i~e~~ap~t~------------vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  163 KILKVITEHGAPVTG------------VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceeeeeecCCccce------------EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            888888777655421            245566667777888877776  5554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.05  E-value=0.79  Score=38.98  Aligned_cols=66  Identities=17%  Similarity=0.061  Sum_probs=46.8

Q ss_pred             CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721          229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  303 (457)
Q Consensus       229 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~  303 (457)
                      -|++++.| ..+.+++.+.++..+......        ....-......+++ .+|.+|+.|++.+..|.++....
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~--------~~~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI--------LETVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeee--------hhhhccceEEcCCC-ceEEEecCCCcEEEecccccceE
Confidence            36678888 999999999995545554321        11111223456777 89999999999999999886543

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.04  E-value=1.7  Score=43.16  Aligned_cols=125  Identities=11%  Similarity=0.114  Sum_probs=63.1

Q ss_pred             eeEEEeCCCCCEEEEe-CC-CeEEEEEcCCCcceeeeeecCCCccc-CCCCceEEEEEecCCccEEEEEccCCeEEE---
Q 012721          221 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL---  294 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l---  294 (457)
                      ...-.|+|+|..+++. .. ..+++.+....++ +..+.+...... .....|..+.|+||| ..++... +|.|.+   
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq-l~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ-LARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV  475 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCce-EEEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence            6677899998877776 32 2344443321122 211111111111 234579999999999 6666554 467666   


Q ss_pred             EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCC
Q 012721          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDST  360 (457)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~  360 (457)
                      -....+.........+.            .+-...+.++.|.+++.+++...++...+|.+...+.
T Consensus       476 vr~~~G~~~l~~~~~l~------------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~  529 (591)
T PRK13616        476 EQTEDGQYALTNPREVG------------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS  529 (591)
T ss_pred             EeCCCCceeecccEEee------------cccCCccccceEecCCEEEEEecCCCCceEEEecCCc
Confidence            33233321110000010            1112336789999999866544444444555544343

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.98  E-value=0.31  Score=49.13  Aligned_cols=96  Identities=10%  Similarity=0.070  Sum_probs=58.3

Q ss_pred             cceEEEEEccCCCeEEEEecCcEEEEeccCC-CCceeEeeecccc-----ccccccccCCCCccccceEEEcCC---CcE
Q 012721          328 ASISDIKFANDGQHLLSRDYMNLKLWDIRMD-STPVATFKIHEHL-----RPKLCDLYNNDSIFDKFECSVSGD---GLH  398 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~d---~~~  398 (457)
                      -.|..+.++|+|++|+..+...|.|-.+... +.. ..+.+....     +..-..+|....-..|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~-~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKN-GEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCcc-ccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4689999999999999776655665555210 100 011100000     000011222233334578999996   589


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          399 FATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       399 l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      |+.-..|+++++||+.....+.+++.
T Consensus       164 l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             EEEEecCCEEEEEecCCCCCCeEEEE
Confidence            99999999999999987655555554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.86  E-value=0.027  Score=46.55  Aligned_cols=143  Identities=11%  Similarity=-0.037  Sum_probs=78.5

Q ss_pred             EEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccc
Q 012721          232 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR  311 (457)
Q Consensus       232 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~  311 (457)
                      ++++..|+.|.-++++......+.       -..+... .   --+.....+++|+.+|.|.+|+...-..   +...+.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rs-------e~~~~e~-~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~---~~d~~~   98 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRS-------ERFIDEG-Q---RVVTASAKLMVGTSDGAVYVFNWNLEGA---HSDRVC   98 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhh-------hhhhhcc-e---eecccCceEEeecccceEEEecCCccch---HHHhhh
Confidence            344457788888877632222211       0111111 1   1122226799999999999998763211   011111


Q ss_pred             ccccccCcccceeccccceEEEEE-ccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccce
Q 012721          312 DAAESHGSKSFFTEIIASISDIKF-ANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  389 (457)
Q Consensus       312 ~~~~~~~~~~~~~~h~~~v~~~~~-s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  389 (457)
                      .             -...|.++.- ..++.+..++. +|.|+.|++.. .+.+.....|...-              ...
T Consensus        99 s-------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~--------------~e~  150 (238)
T KOG2444|consen   99 S-------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFES--------------GEE  150 (238)
T ss_pred             c-------------ccccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCC--------------cce
Confidence            1             0122322221 12333445554 59999999975 67666666565221              134


Q ss_pred             EEEcCCCcEEEEE--eCCCcEEEEecCCC
Q 012721          390 CSVSGDGLHFATG--SYSNLLRIFSHGVG  416 (457)
Q Consensus       390 ~~~s~d~~~l~s~--~~dg~i~iw~~~~~  416 (457)
                      ...+..+++|+.+  |.|..++.|++..-
T Consensus       151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  151 LIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             eEEecCCceEEeeccccchhhhhcchhhh
Confidence            5555667778777  88888888888654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.70  E-value=1.3  Score=38.84  Aligned_cols=70  Identities=11%  Similarity=0.057  Sum_probs=43.2

Q ss_pred             CeeEEEeCCCCCEEEEe----CCCeEEEEEcCCCcce-eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC
Q 012721          220 NINSISNNSDCETFVSA----DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  290 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg  290 (457)
                      .|..+.++|||..++.-    .++.|.+=-+.....- ...+.............+++++|.+++ .+++.+...+
T Consensus       113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~  187 (253)
T PF10647_consen  113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVLGRSAG  187 (253)
T ss_pred             ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEEeCCCC
Confidence            89999999999998774    3677877665422211 111100000112334678999999998 7776665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.70  E-value=2.9  Score=42.69  Aligned_cols=120  Identities=11%  Similarity=0.050  Sum_probs=65.3

Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC------Ce
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG------QH  341 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g------~~  341 (457)
                      +.++....+.+. ..++.++.++.+...++..+.+.....+.+                ...|.|+.++|-|      ++
T Consensus       488 ~~~ti~~~~~n~-sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~----------------e~evaCLDisp~~d~~~~s~~  550 (1096)
T KOG1897|consen  488 GKITIGVVSANA-SQVVVAGGGLALFYLEIEDGGLREVSHKEF----------------EYEVACLDISPLGDAPNKSRL  550 (1096)
T ss_pred             CceEEEEEeecc-eEEEEecCccEEEEEEeeccceeeeeehee----------------cceeEEEecccCCCCCCcceE
Confidence            444555555555 567777777777777776654221111222                2479999999752      36


Q ss_pred             EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721          342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      ++.|.. ..+.+.-...+...+.........+++        .   +.-..+-.|..+|.++..||.+..|.+..
T Consensus       551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPR--------S---Il~~~~e~d~~yLlvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  551 LAVGLWSDISMILTFLPDLILITHEQLSGEIIPR--------S---ILLTTFEGDIHYLLVALGDGALLYFVLDI  614 (1096)
T ss_pred             EEEEeecceEEEEEECCCcceeeeeccCCCccch--------h---eeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence            677743 333222221223333222111122211        1   13456666789999999999987776543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.61  E-value=0.12  Score=48.19  Aligned_cols=131  Identities=11%  Similarity=0.133  Sum_probs=83.6

Q ss_pred             EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC--------eEEEEecCcEEEE
Q 012721          282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--------HLLSRDYMNLKLW  353 (457)
Q Consensus       282 ~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--------~l~s~~~~~i~~w  353 (457)
                      +|..+.....++-.|+..|+..    ..|..              ...|+-+.+.|+.+        .|+--++..|.-|
T Consensus       348 il~~~~~~~~l~klDIE~GKIV----eEWk~--------------~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri  409 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIV----EEWKF--------------EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI  409 (644)
T ss_pred             EeeCCCCcCcceeeecccceee----eEeec--------------cCCcceeeccCCcchhcccccccEEeecCCceEEe
Confidence            3444555566888888888655    44444              12366667777643        2333356889999


Q ss_pred             eccCCCC-ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCccee
Q 012721          354 DIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  432 (457)
Q Consensus       354 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~  432 (457)
                      |.+..++ .+...++|.....         .-   +++.-.....+||.|+.+|.|++||- .+......+.+-..+|..
T Consensus       410 DpRv~~~~kl~~~q~kqy~~k---------~n---Fsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~h  476 (644)
T KOG2395|consen  410 DPRVQGKNKLAVVQSKQYSTK---------NN---FSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKH  476 (644)
T ss_pred             cccccCcceeeeeeccccccc---------cc---cceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceee
Confidence            9986555 3333344433211         00   23333334568999999999999997 664556677888899999


Q ss_pred             eeeccCCccee
Q 012721          433 PILQAAPRARR  443 (457)
Q Consensus       433 ~~~~p~~~~~~  443 (457)
                      |..+.+|.-.+
T Consensus       477 VdvtadGKwil  487 (644)
T KOG2395|consen  477 VDVTADGKWIL  487 (644)
T ss_pred             EEeeccCcEEE
Confidence            98888876544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.61  E-value=1.6  Score=39.06  Aligned_cols=171  Identities=12%  Similarity=0.056  Sum_probs=80.8

Q ss_pred             CCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721          229 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (457)
Q Consensus       229 ~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~  308 (457)
                      ++..++++..|.  ||.....++..+.+      ..+-...+..+.-+++| .++++++......-||--.        .
T Consensus       114 ~~~~~l~~~~G~--iy~T~DgG~tW~~~------~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~--------~  176 (302)
T PF14870_consen  114 DGSAELAGDRGA--IYRTTDGGKTWQAV------VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ--------T  176 (302)
T ss_dssp             TTEEEEEETT----EEEESSTTSSEEEE------E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------S
T ss_pred             CCcEEEEcCCCc--EEEeCCCCCCeeEc------ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCC--------c
Confidence            333344444343  33333355555443      23344778888889999 8888887766666777543        2


Q ss_pred             cccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccc
Q 012721          309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  388 (457)
Q Consensus       309 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  388 (457)
                      .+..|...         -...|.+|.|.|++.+.+.+..|.|++=+..   .....+..+...+.        ..-+.+.
T Consensus       177 ~w~~~~r~---------~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~---~~~~~w~~~~~~~~--------~~~~~~l  236 (302)
T PF14870_consen  177 TWQPHNRN---------SSRRIQSMGFSPDGNLWMLARGGQIQFSDDP---DDGETWSEPIIPIK--------TNGYGIL  236 (302)
T ss_dssp             S-EEEE-----------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T---TEEEEE---B-TTS--------S--S-EE
T ss_pred             cceEEccC---------ccceehhceecCCCCEEEEeCCcEEEEccCC---CCccccccccCCcc--------cCceeeE
Confidence            22221111         1357999999999988777766888877621   11222222111100        0011236


Q ss_pred             eEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe--cCCCcceeeeeccC
Q 012721          389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE--AGKNENRKPILQAA  438 (457)
Q Consensus       389 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~~v~~~~~~p~  438 (457)
                      +++|.+++...++|+. |.+ +...+.|+.=...-.  .-.+....+.|.+.
T Consensus       237 d~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  237 DLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP  286 (302)
T ss_dssp             EEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred             EEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence            8999999887776665 544 445566633333322  23455777777644

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.33  E-value=1.3  Score=38.66  Aligned_cols=155  Identities=12%  Similarity=0.052  Sum_probs=85.1

Q ss_pred             CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE-
Q 012721          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD-  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd-  296 (457)
                      .+.+.++++++..++..  .++.-.+|-....+.....       +.+  ..+...+|++++ .+.+....+...+++. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~~g--~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~   94 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------LTG--GSLTRPSWDPDG-WVWTVDDGSGGVRVVRD   94 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------ccC--CccccccccCCC-CEEEEEcCCCceEEEEe
Confidence            68899999999987763  3444444444422332222       122  367778999998 7777777676667663 


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe----cCcEEEEeccCCCCc-eeEeeecccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP-VATFKIHEHL  371 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~~~i~~wd~~~~~~~-~~~~~~~~~~  371 (457)
                      ...+......+.....              ...|..+.+||||..+|.-.    ++.|.+--+.....- ...+......
T Consensus        95 ~~~g~~~~~~v~~~~~--------------~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~  160 (253)
T PF10647_consen   95 SASGTGEPVEVDWPGL--------------RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV  160 (253)
T ss_pred             cCCCcceeEEeccccc--------------CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence            2333211100111111              12799999999999887532    377777665321111 1111100000


Q ss_pred             ccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       372 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                      .        ......++++.|.+++.+++.+...+
T Consensus       161 ~--------~~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  161 A--------PPLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             c--------ccccCcceeeeecCCCEEEEEeCCCC
Confidence            0        00011236899999998877666544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.29  E-value=2.4  Score=40.76  Aligned_cols=71  Identities=11%  Similarity=-0.039  Sum_probs=44.2

Q ss_pred             EEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCC
Q 012721          223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (457)
Q Consensus       223 ~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~  300 (457)
                      .+.|+|....|+.= ....=.+++++.....++. +     + ...+.|.|.+|.+||.++++..+..=.-++||-...
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka-D-----i-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA-D-----I-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             cccccCCCceEEEEecCceeEeeeeeeCCceEEE-e-----c-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            56799988887764 3333345566633333332 1     2 345789999999999444444455555678886554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.29  E-value=0.05  Score=54.97  Aligned_cols=82  Identities=11%  Similarity=0.018  Sum_probs=61.7

Q ss_pred             CCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721          339 GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       339 g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                      +-.++.|++ |.+-..|+...-.+   +  |.+..          ...+|++++|+.||..++.|-.+|.|.+||+.++ 
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~---~--~~ne~----------v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-  162 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGP---L--HQNER----------VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-  162 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccch---h--hcCCc----------cCCcceeeEecCCCceeccccCCCcEEEEEccCC-
Confidence            557788877 99998888632111   1  11110          1224479999999999999999999999999998 


Q ss_pred             ceeeEEecCCCcceeeeec
Q 012721          418 AGGITVEAGKNENRKPILQ  436 (457)
Q Consensus       418 ~~~~~~~~~~~~v~~~~~~  436 (457)
                      +..+.+.-|..|...+.++
T Consensus       163 k~l~~i~e~~ap~t~vi~v  181 (1206)
T KOG2079|consen  163 KILKVITEHGAPVTGVIFV  181 (1206)
T ss_pred             cceeeeeecCCccceEEEE
Confidence            7788888888888888765

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.25  E-value=0.32  Score=47.74  Aligned_cols=31  Identities=16%  Similarity=0.462  Sum_probs=28.2

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEe
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKV  144 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~  144 (457)
                      +.|.++.|...++++.+++.+..+.|.++.-
T Consensus        73 ~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   73 DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            7899999998899999999999999999863

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.19  E-value=1.7  Score=43.33  Aligned_cols=76  Identities=11%  Similarity=0.111  Sum_probs=53.0

Q ss_pred             CCCCeeEEEeC--CCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCC--cc---EEEEEcc
Q 012721          217 HDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSS  288 (457)
Q Consensus       217 h~~~v~~~~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~--~~---~l~~~~~  288 (457)
                      -...++.++++  ...++||++ ....|.||-...........     .-..+...|.+|+|-++.  +.   .+++++-
T Consensus       162 v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~-----~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI  236 (717)
T PF08728_consen  162 VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV-----PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDI  236 (717)
T ss_pred             cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc-----cccccccCCCeeEeecCCCCCccceEEEEEec
Confidence            34478899998  788899998 88888888766321111110     011366788999997654  12   7888899


Q ss_pred             CCeEEEEEc
Q 012721          289 RGFVRLVDM  297 (457)
Q Consensus       289 dg~i~lwd~  297 (457)
                      .|.+.+|++
T Consensus       237 ~G~v~~~~I  245 (717)
T PF08728_consen  237 SGEVWTFKI  245 (717)
T ss_pred             cCcEEEEEE
Confidence            999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.09  E-value=0.094  Score=30.79  Aligned_cols=31  Identities=32%  Similarity=0.504  Sum_probs=26.6

Q ss_pred             CceEEEEECCC-C--CEEEEEeCCCeEEEEEecC
Q 012721           33 DIVSAIEFDKT-G--DYLAVGDRGGRVILFETVG   63 (457)
Q Consensus        33 ~~V~~~~~s~~-~--~~latg~~dg~i~iw~~~~   63 (457)
                      ++|+++.|||+ +  ++||.+-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            47899999984 4  6999998899999999874

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.05  E-value=0.35  Score=49.58  Aligned_cols=153  Identities=10%  Similarity=-0.008  Sum_probs=90.3

Q ss_pred             CeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCccee--eeeecCC-CcccCCCCceEEEEEecCCccEEEEEccCCeEE
Q 012721          220 NINSISNNSDCETFVSA---DDLRINLWNLEISDQCF--NIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~--~~~~~~~-~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~  293 (457)
                      ++..+...+|+...++.   .+-.|..||++.-....  ....++. ...........++.|+|.-+...+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45555566676655543   55688999997321111  0000000 011223345678889987656677788899999


Q ss_pred             EEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccc
Q 012721          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  372 (457)
Q Consensus       294 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~  372 (457)
                      +..+......   +..+..              ....++++|+|.|+.++.|.. |++.-|...  .+....+.+.... 
T Consensus       182 V~~~~~~~~~---v~s~p~--------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~~-  241 (1405)
T KOG3630|consen  182 VKSTKQLAQN---VTSFPV--------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPVE-  241 (1405)
T ss_pred             hhhhhhhhhh---hcccCc--------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCcC-
Confidence            8876543211   111111              356899999999999999976 999888764  3333333322211 


Q ss_pred             cccccccCCCCccccceEEEcCCCcEEEEE
Q 012721          373 PKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (457)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  402 (457)
                             +   .+.|++++|-..-.++++-
T Consensus       242 -------e---~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  242 -------E---NYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             -------C---CcceeEEEEecceeEEEEe
Confidence                   1   2234789998777777653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.99  E-value=0.22  Score=42.33  Aligned_cols=79  Identities=9%  Similarity=0.058  Sum_probs=54.3

Q ss_pred             EecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEe
Q 012721          275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  354 (457)
Q Consensus       275 ~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd  354 (457)
                      +..++ .++++-..+|.+++||+.+++.....+.+...-.... ....  .....|..+.++.+|.-|++-++|..+.|+
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~~--~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSDK--SSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-cccC--CCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            44566 7899999999999999999876644333222100000 0000  334678999999999988888888899999


Q ss_pred             ccC
Q 012721          355 IRM  357 (457)
Q Consensus       355 ~~~  357 (457)
                      .+.
T Consensus        94 ~~L   96 (219)
T PF07569_consen   94 PDL   96 (219)
T ss_pred             ccc
Confidence            864

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.88  E-value=0.76  Score=43.95  Aligned_cols=156  Identities=12%  Similarity=0.051  Sum_probs=83.8

Q ss_pred             CCeeEEEeCCCCCEE-EEe---CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCC---ccEEEEEccCCe
Q 012721          219 FNINSISNNSDCETF-VSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY---CNLLAYSSSRGF  291 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~---~~~l~~~~~dg~  291 (457)
                      .++..++|. ||+.+ .+.   .+|.+++=|-.               .-+.-+.|..++|.|-+   ..-++.......
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---------------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkh   83 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---------------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKH   83 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCcc---------------EeeccceeeeeeecCcccCCCCceEEEeccce
Confidence            378899998 55544 443   45666554433               12334668999999863   124444567788


Q ss_pred             EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCcee-Eeeecc
Q 012721          292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA-TFKIHE  369 (457)
Q Consensus       292 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~-~~~~~~  369 (457)
                      |.+|.+.-....... -.+.. .  -.....|.   ---..+.|+|....|+.-.. ..-.++++..++..++ .+.. .
T Consensus        84 VtVWqL~~s~~e~~K-~l~sQ-t--cEi~e~~p---vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~-~  155 (671)
T PF15390_consen   84 VTVWQLCPSTTERNK-LLMSQ-T--CEIREPFP---VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT-S  155 (671)
T ss_pred             EEEEEeccCcccccc-ceeee-e--eeccCCcc---cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC-C
Confidence            999998632111000 00000 0  00000000   01135789999988886543 2324455554333333 2332 2


Q ss_pred             ccccccccccCCCCccccceEEEcCCCcEEEEEeCC-CcEEEEec
Q 012721          370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSH  413 (457)
Q Consensus       370 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~i~iw~~  413 (457)
                      +.+               .+.+|.+||+.|+.+-.. =.-+|||-
T Consensus       156 G~I---------------hCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  156 GLI---------------HCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ceE---------------EEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            332               689999999887765433 34678884

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.80  E-value=0.036  Score=54.85  Aligned_cols=67  Identities=15%  Similarity=0.175  Sum_probs=45.2

Q ss_pred             eEEEeCC---CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE-----------EEecCCccEEEEE
Q 012721          222 NSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA-----------EFHPIYCNLLAYS  286 (457)
Q Consensus       222 ~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v-----------~~~p~~~~~l~~~  286 (457)
                      .-+.|.|   +.-++..+ .++.+++..++...+  .+       +.+|...++.+           ..+||| ..++.+
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l-------~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a  253 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SL-------FRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWA  253 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechHHH--HH-------HHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEe
Confidence            4444543   66677777 889999887763222  11       33455444443           368999 999999


Q ss_pred             ccCCeEEEEEcc
Q 012721          287 SSRGFVRLVDMR  298 (457)
Q Consensus       287 ~~dg~i~lwd~~  298 (457)
                      +.||.+++|.+.
T Consensus       254 ~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  254 ISDGSVGFYQIY  265 (1283)
T ss_pred             ecCCccceeeee
Confidence            999999999875

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.74  E-value=3.8  Score=38.65  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=63.7

Q ss_pred             Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccc
Q 012721          235 SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA  313 (457)
Q Consensus       235 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~  313 (457)
                      .| .+..|.-.|.+..+..+.+...+.  +.. .....+..-...  .++|.++..|-|++||.-....           
T Consensus       532 vGlS~~svFrIDPR~~gNKi~v~esKd--Y~t-Kn~Fss~~tTes--GyIa~as~kGDirLyDRig~rA-----------  595 (776)
T COG5167         532 VGLSDYSVFRIDPRARGNKIKVVESKD--YKT-KNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRA-----------  595 (776)
T ss_pred             EeecccceEEecccccCCceeeeeehh--ccc-cccccccccccC--ceEEEecCCCceeeehhhcchh-----------
Confidence            45 777777778876665444432221  111 122334443444  4899999999999999543211           


Q ss_pred             ccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEecc
Q 012721          314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  356 (457)
Q Consensus       314 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~  356 (457)
                            +..+.+....|-.+..+.+|+++++.+...+.+-|++
T Consensus       596 ------KtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         596 ------KTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             ------hhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence                  1112333567889999999999998877888888874

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.70  E-value=2.6  Score=36.57  Aligned_cols=161  Identities=13%  Similarity=0.078  Sum_probs=87.3

Q ss_pred             EeCCCCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc----------
Q 012721          225 SNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----------  288 (457)
Q Consensus       225 ~~~~~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~----------  288 (457)
                      .|+|||.+|++. +|     |.|-|||.+..-+.+       .++..|.-....+.+.+|| +.++.+..          
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv-------gE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR  191 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV-------GEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGR  191 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEeccccccee-------cccccCCcCcceeEEecCC-cEEEEeCCceecccccCc
Confidence            589999999986 43     789999998333333       2366777777889999999 87776532          


Q ss_pred             --------CCeEEEEEccCCeeeccccccccccccccCccccee--ccccceEEEEEccCCCeEEEEec-Cc----EEEE
Q 012721          289 --------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT--EIIASISDIKFANDGQHLLSRDY-MN----LKLW  353 (457)
Q Consensus       289 --------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~~-~~----i~~w  353 (457)
                              .-.+.+.|..+++++.+               .++.  .+.-+|..+...+||..++.+-. |.    --+.
T Consensus       192 ~~lNldsMePSlvlld~atG~liek---------------h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLv  256 (366)
T COG3490         192 TELNLDSMEPSLVLLDAATGNLIEK---------------HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLV  256 (366)
T ss_pred             cccchhhcCccEEEEeccccchhhh---------------ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcce
Confidence                    11223333333332221               1111  23456788888888877765432 11    0011


Q ss_pred             eccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEE-EEeCCCcEEEEecCCC
Q 012721          354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVG  416 (457)
Q Consensus       354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~iw~~~~~  416 (457)
                      -....++++.-+...+.....+.     .-   +-+++.+.+..+++ |.=.-+...+||..+|
T Consensus       257 g~~~~g~~l~~~~~pee~~~~~a-----nY---igsiA~n~~~glV~lTSP~GN~~vi~da~tG  312 (366)
T COG3490         257 GHFRKGEPLEFLDLPEEQTAAFA-----NY---IGSIAANRRDGLVALTSPRGNRAVIWDAATG  312 (366)
T ss_pred             eeccCCCcCcccCCCHHHHHHHH-----hh---hhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence            11112344433332221100000     00   12566665544444 4444567889999999

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.69  E-value=3.4  Score=37.84  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=22.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEE
Q 012721           34 IVSAIEFDKTGDYLAVGDRGGRVILFE   60 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~dg~i~iw~   60 (457)
                      ..++|+|.|||++|++ ...|.|++++
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD   28 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence            4589999999988775 5699999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.65  E-value=0.14  Score=30.09  Aligned_cols=32  Identities=31%  Similarity=0.547  Sum_probs=27.0

Q ss_pred             CceEEEEEecCCc--cEEEEEccCCeEEEEEccC
Q 012721          268 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       268 ~~i~~v~~~p~~~--~~l~~~~~dg~i~lwd~~~  299 (457)
                      +.+.++.|+|...  .+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3578999998763  5888888899999999996

It contains a characteristic DLL sequence motif.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.62  E-value=0.18  Score=41.93  Aligned_cols=65  Identities=11%  Similarity=0.103  Sum_probs=40.7

Q ss_pred             CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEE-EecCCccEEEEEccCCeEEEEEccCCee
Q 012721          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-FHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (457)
Q Consensus       230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~-~~p~~~~~l~~~~~dg~i~lwd~~~~~~  302 (457)
                      +..+++| .+|.|++|..+..+.....       .......|.++- -..++ .+..++..||.|+.|++.-.+.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~  136 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV  136 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHh-------hhcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence            4567777 9999999998833332221       111223333332 22233 5888999999999999877643

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.46  E-value=3.6  Score=37.07  Aligned_cols=94  Identities=14%  Similarity=0.130  Sum_probs=60.7

Q ss_pred             cceEEEEEccCCCeEEEEec--CcEEEEeccC-CC----CceeEee-eccccccccccccCCCCccccceEEEcCCCcEE
Q 012721          328 ASISDIKFANDGQHLLSRDY--MNLKLWDIRM-DS----TPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  399 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~-~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  399 (457)
                      ..-+.|+||||++.|..++.  +.|.-|++.. .+    +...... ...+..               =.++...+|.+.
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P---------------DG~~vDadG~lw  227 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP---------------DGMAVDADGNLW  227 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC---------------CceEEeCCCCEE
Confidence            34578999999998887753  8888887752 11    1111111 111111               257777888888


Q ss_pred             EEEeCCC-cEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721          400 ATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       400 ~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                      +++-.+| .|.+|+.+ | +.+.........+.+++|-..
T Consensus       228 ~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~  265 (307)
T COG3386         228 VAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGP  265 (307)
T ss_pred             EecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeCC
Confidence            6555554 89999988 6 667777766677777778754

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.34  E-value=1.7  Score=42.82  Aligned_cols=74  Identities=14%  Similarity=0.075  Sum_probs=46.0

Q ss_pred             CCCCeeEEEe--CCCCCEEEE-eCCCeEEEEEcCC-----Cc---ceeeeeecCCCcccCCC-CceEEEEEecCCccEEE
Q 012721          217 HDFNINSISN--NSDCETFVS-ADDLRINLWNLEI-----SD---QCFNIVDMKPSNMDDLT-EVITSAEFHPIYCNLLA  284 (457)
Q Consensus       217 h~~~v~~~~~--~~~~~~l~~-~~d~~i~iwd~~~-----~~---~~~~~~~~~~~~~~~~~-~~i~~v~~~p~~~~~l~  284 (457)
                      ..+.|..+.|  .|+++.+++ |..+.|.+|.-..     ..   ..++.++     +..++ .+|.+..|.++| .+++
T Consensus        71 ~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~-----i~~~T~h~Igds~Wl~~G-~LvV  144 (631)
T PF12234_consen   71 EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID-----ISSHTPHPIGDSIWLKDG-TLVV  144 (631)
T ss_pred             CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE-----eecCCCCCccceeEecCC-eEEE
Confidence            4567888888  467777666 4888888885421     11   1122222     23343 578899999998 5444


Q ss_pred             EEccCCeEEEEEcc
Q 012721          285 YSSSRGFVRLVDMR  298 (457)
Q Consensus       285 ~~~~dg~i~lwd~~  298 (457)
                      .+  ++.+.|+|-.
T Consensus       145 ~s--GNqlfv~dk~  156 (631)
T PF12234_consen  145 GS--GNQLFVFDKW  156 (631)
T ss_pred             Ee--CCEEEEECCC
Confidence            33  4567888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.26  E-value=3.9  Score=36.66  Aligned_cols=117  Identities=14%  Similarity=0.107  Sum_probs=62.1

Q ss_pred             CCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      -...|..+.|.|++.+.+.+..+.|+.=+..........   ...........+..++|.+++ ...++|+. |.+ +..
T Consensus       185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~---~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~-G~l-~~S  258 (302)
T PF14870_consen  185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE---PIIPIKTNGYGILDLAYRPPN-EIWAVGGS-GTL-LVS  258 (302)
T ss_dssp             SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEEESSSS--EEEEEST-T-E-EEE
T ss_pred             ccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc---ccCCcccCceeeEEEEecCCC-CEEEEeCC-ccE-EEe
Confidence            446899999999998888779999998872212222211   000112233458999999987 77776654 432 334


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEE
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  353 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~w  353 (457)
                      ...++       .++. ...      ...-...++.+.|.++.+-++.|.+|.|--|
T Consensus       259 ~DgGk-------tW~~-~~~------~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  259 TDGGK-------TWQK-DRV------GENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             SSTTS-------S-EE--GG------GTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             CCCCc-------cceE-Ccc------ccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            44543       2222 000      0011246889999888888888988877554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.20  E-value=3  Score=35.13  Aligned_cols=141  Identities=12%  Similarity=0.067  Sum_probs=79.9

Q ss_pred             CeeEEEeCCCCCEEEEe-CC---------CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC
Q 012721          220 NINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  289 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d  289 (457)
                      ..+.-..+|+|++++-. .|         |.++.|-..  .+...+        ...-.--..++|+.+...+.++-+.+
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDsln  179 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDSLN  179 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEccCc
Confidence            45556678899885543 32         455555544  111111        11223345688998874455666678


Q ss_pred             CeEEEEE--ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ecCcEEEEeccCCCCceeEee
Q 012721          290 GFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFK  366 (457)
Q Consensus       290 g~i~lwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~~~i~~wd~~~~~~~~~~~~  366 (457)
                      -.|.-||  ..++.... ...+++.....+.      ++ ..--.++...+|.+.++. +.++|...|..+ ++.+.++.
T Consensus       180 ~~V~a~dyd~~tG~~sn-r~~i~dlrk~~~~------e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~eik  250 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSN-RKVIFDLRKSQPF------ES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEIK  250 (310)
T ss_pred             eEEeeeecCCCcccccC-cceeEEeccCCCc------CC-CCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEEEE
Confidence            8887787  66654331 1122222110000      00 111234456677766655 449999999986 89988888


Q ss_pred             eccccccccccccCCCCccccceEEEcC
Q 012721          367 IHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (457)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~  394 (457)
                      .....+               ++++|-.
T Consensus       251 lPt~qi---------------tsccFgG  263 (310)
T KOG4499|consen  251 LPTPQI---------------TSCCFGG  263 (310)
T ss_pred             cCCCce---------------EEEEecC
Confidence            776544               6889864

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.15  E-value=1.1  Score=46.36  Aligned_cols=102  Identities=10%  Similarity=-0.040  Sum_probs=67.1

Q ss_pred             CeeEEEeCCCCCE-EEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          220 NINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       220 ~v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      ...++.|+|.-.. .+.+ .|+.|.+..+.........        -......++++|+|.| +.++.|...|++.-|-.
T Consensus       157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s--------~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS--------FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             ccccccccCCccchhhhhccccchhhhhhhhhhhhhcc--------cCcccceeeEEecccc-ceeeEecCCCeEEEeec
Confidence            4567888885433 3445 8999999887633333222        1244678999999999 99999999999988865


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      .-...     +.+..   .+..      ....|.+|+|-....+++.
T Consensus       228 ~leik-----~~ip~---Pp~~------e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  228 SLEIK-----SEIPE---PPVE------ENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             cccee-----ecccC---CCcC------CCcceeEEEEecceeEEEE
Confidence            43210     11111   1100      0367999999988888875

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.84  E-value=2.7  Score=39.14  Aligned_cols=109  Identities=12%  Similarity=0.080  Sum_probs=55.1

Q ss_pred             CeeEEEeCCCCCEEEEe-C-----------C-CeEEEEEcC-CCcce--eeeeecCCCcccCCCCceEEEEEecCCccEE
Q 012721          220 NINSISNNSDCETFVSA-D-----------D-LRINLWNLE-ISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  283 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-~-----------d-~~i~iwd~~-~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l  283 (457)
                      ....++|.++|+++++. .           . ..|.+++-. ..++.  ..+       +.........+++.+++   |
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v-------fa~~l~~p~Gi~~~~~G---l   84 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV-------FAEELSMVTGLAVAVGG---V   84 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE-------eecCCCCccceeEecCC---E
Confidence            45688999999988774 1           1 266666532 12322  122       22223346788898886   4


Q ss_pred             EEEccCCeEEEEEccCCeeec-cccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          284 AYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       284 ~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      ++++.....++.|........ ....++......      -..+......++|.|||.+.++
T Consensus        85 yV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~------~~~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        85 YVATPPDILFLRDKDGDDKADGEREVLLSGFGGQ------INNHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             EEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCC------CCcccccccCceECCCCCEEEe
Confidence            444444444444554321111 111122210000      0001234778999999987664

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.63  E-value=6.2  Score=36.82  Aligned_cols=18  Identities=22%  Similarity=0.252  Sum_probs=14.7

Q ss_pred             CceEEEEECCCCCEEEEE
Q 012721           33 DIVSAIEFDKTGDYLAVG   50 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg   50 (457)
                      .....|+|.++|+++++-
T Consensus        14 ~~P~~ia~d~~G~l~V~e   31 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAE   31 (367)
T ss_pred             CCCceeeECCCCCEEEEe
Confidence            456889999999988764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.55  E-value=9.7  Score=38.82  Aligned_cols=82  Identities=17%  Similarity=0.204  Sum_probs=54.1

Q ss_pred             CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCC-c---------c--eeeeeecCCCcc-cCCCCceEEEEEecCC--ccEE
Q 012721          219 FNINSISNNSDCETFVSADDLRINLWNLEIS-D---------Q--CFNIVDMKPSNM-DDLTEVITSAEFHPIY--CNLL  283 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~-~---------~--~~~~~~~~~~~~-~~~~~~i~~v~~~p~~--~~~l  283 (457)
                      -.|..+.++|+|.+++......|.|..+-.. +         .  .-+.+.+...-+ ..+...|..+.|+|.+  +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4788999999999998874455555555311 0         1  111222221111 2345689999999974  2688


Q ss_pred             EEEccCCeEEEEEccCC
Q 012721          284 AYSSSRGFVRLVDMRQS  300 (457)
Q Consensus       284 ~~~~~dg~i~lwd~~~~  300 (457)
                      +.-..|+++|+||+...
T Consensus       165 ~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEecCCEEEEEecCCC
Confidence            88889999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.51  E-value=10  Score=39.00  Aligned_cols=182  Identities=11%  Similarity=0.011  Sum_probs=90.8

Q ss_pred             CCCeeEEEeCCC--C----CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC
Q 012721          218 DFNINSISNNSD--C----ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  290 (457)
Q Consensus       218 ~~~v~~~~~~~~--~----~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg  290 (457)
                      ...|.|+.++|-  +    ++++.| ++..+.+.-.......+.....+   .+.-...|.-.++-.+. .+|.++..||
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~---~~~iPRSIl~~~~e~d~-~yLlvalgdG  605 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS---GEIIPRSILLTTFEGDI-HYLLVALGDG  605 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC---CCccchheeeEEeeccc-eEEEEEcCCc
Confidence            457889988873  2    267778 66665554433122222211111   12223445555666666 8999999999


Q ss_pred             eEEEEEccC--CeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEecCcEEEEeccCCCCceeEeee
Q 012721          291 FVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKI  367 (457)
Q Consensus       291 ~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~  367 (457)
                      .+.-|.+..  +.+.+.....+..               .++.-=.|+. ....+++.+|.-..+|..+  ++++.+--.
T Consensus       606 ~l~~fv~d~~tg~lsd~Kk~~lGt---------------~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n--~kLv~spls  668 (1096)
T KOG1897|consen  606 ALLYFVLDINTGQLSDRKKVTLGT---------------QPISLRTFSSKSRTAVFALSDRPTVIYSSN--GKLVYSPLS  668 (1096)
T ss_pred             eEEEEEEEcccceEccccccccCC---------------CCcEEEEEeeCCceEEEEeCCCCEEEEecC--CcEEEeccc
Confidence            988765544  4332221112221               3444445554 4567777787666666653  444432211


Q ss_pred             ccccccccccccCCCCccccceEEEcCC--CcEEEEEeCCCcEEEEecCCCCc-eeeEEecCCCcceeeeecc
Q 012721          368 HEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGSA-GGITVEAGKNENRKPILQA  437 (457)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~v~~~~~~p  437 (457)
                      -. .+.              .-+.|+.+  ...|+++.. +.+.+..++.-.+ ...+. .-..+.+.+++++
T Consensus       669 ~k-ev~--------------~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~  724 (1096)
T KOG1897|consen  669 LK-EVN--------------HMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTV-PLGESPRRICYQE  724 (1096)
T ss_pred             hH-Hhh--------------hhcccccccCCceEEEecC-CceEEEEecchhhcceeee-cCCCChhheEecc
Confidence            11 111              12334332  234555544 4566776654322 23332 2334556666666

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.33  E-value=4.2  Score=33.95  Aligned_cols=78  Identities=10%  Similarity=0.121  Sum_probs=42.0

Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc--ceEEEEEccCCCeEEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLS  344 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s  344 (457)
                      ...+.+++..|-.+++++ |+ ++++.+|.+............++-       ...+..|..  ....+++.  +.|+|.
T Consensus       134 ~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDF-------e~~l~~~~~~~~p~~v~ic--~~yiA~  202 (215)
T PF14761_consen  134 SEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDF-------ERSLIDHIDNFKPTQVAIC--EGYIAV  202 (215)
T ss_pred             CCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEec-------hhhhhheecCceEEEEEEE--eeEEEE
Confidence            356778888776535554 43 567899988764321111111111       001111111  24455554  779998


Q ss_pred             EecCcEEEEec
Q 012721          345 RDYMNLKLWDI  355 (457)
Q Consensus       345 ~~~~~i~~wd~  355 (457)
                      .++-.+++..+
T Consensus       203 ~s~~ev~Vlkl  213 (215)
T PF14761_consen  203 MSDLEVLVLKL  213 (215)
T ss_pred             ecCCEEEEEEE
Confidence            88877777765

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.28  E-value=7.1  Score=39.18  Aligned_cols=166  Identities=12%  Similarity=0.053  Sum_probs=90.2

Q ss_pred             CCEEEEeCCCeEEEEEcCCCcceee-----eeecCCCccc---------CCCCceEEEEEecCC-ccEEEEEccCCeEEE
Q 012721          230 CETFVSADDLRINLWNLEISDQCFN-----IVDMKPSNMD---------DLTEVITSAEFHPIY-CNLLAYSSSRGFVRL  294 (457)
Q Consensus       230 ~~~l~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~i~~v~~~p~~-~~~l~~~~~dg~i~l  294 (457)
                      .++++.+..+.|.||+++.......     .+.+++....         .-...|+.|....-| ...|+.+..||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            7788888899999999874322111     1111111000         012334444443322 258888999999999


Q ss_pred             EEccCCeeecccccccccccc----ccCcc-cceeccccceEEEEEc--cCCCeEEEEec-CcEEEEeccCC-CCcee-E
Q 012721          295 VDMRQSALCDHSARILRDAAE----SHGSK-SFFTEIIASISDIKFA--NDGQHLLSRDY-MNLKLWDIRMD-STPVA-T  364 (457)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~h~~~v~~~~~s--~~g~~l~s~~~-~~i~~wd~~~~-~~~~~-~  364 (457)
                      |.+..-....   .......+    ....+ .+.......+++++++  ...++||+++. ..|.||-.... .+... .
T Consensus       129 Yyt~~I~~~i---~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~  205 (717)
T PF08728_consen  129 YYTETIIEAI---ERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP  205 (717)
T ss_pred             EEHHHHHHHH---HhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence            9875311000   00000000    00000 1122234589999998  78889998876 88888766431 11111 0


Q ss_pred             eeeccccccccccccCCCCccccceEEEcCCC------cEEEEEeCCCcEEEEec
Q 012721          365 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG------LHFATGSYSNLLRIFSH  413 (457)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~------~~l~s~~~dg~i~iw~~  413 (457)
                      -..+...+               -+++|-++.      .+|++++-.|.+.+|++
T Consensus       206 s~~~~hNI---------------P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  206 SHQHSHNI---------------PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccCC---------------CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            00122222               367776543      27888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.83  E-value=9.1  Score=36.50  Aligned_cols=60  Identities=13%  Similarity=0.090  Sum_probs=37.8

Q ss_pred             CCeeEEEeCCCCCEEEEeC-CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCC
Q 012721          219 FNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  279 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~  279 (457)
                      ..-+.|+|.||+++|++-. .|.|++++.. .........+..............|+++|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~-~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPE-TGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCC-CCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            4567899999998888874 7999999865 2322222111111011125668899999873

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK13684 Ycf48-like protein; Provisional

Probab=92.25  E-value=9.1  Score=35.12  Aligned_cols=158  Identities=10%  Similarity=0.039  Sum_probs=86.8

Q ss_pred             CCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      ...+..+.+.|++.+++++..|.+..- .+..++.....      ...-...++++.+.+++ ..++++ ..|.+++=..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~------~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~  242 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH------QRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDP  242 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe------eCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccC
Confidence            456888999999988888877766542 11123333322      12234678899999988 766665 5676543223


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD  377 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  377 (457)
                      ..+.       .+.. ...+..     .-...+..+.+.|++..++++.+|.+.. ... .++.............    
T Consensus       243 d~G~-------sW~~-~~~~~~-----~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d-~G~tW~~~~~~~~~~~----  303 (334)
T PRK13684        243 DDLE-------SWSK-PIIPEI-----TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKD-GGKTWEKDPVGEEVPS----  303 (334)
T ss_pred             CCCC-------cccc-ccCCcc-----ccccceeeEEEcCCCCEEEEcCCCeEEE-eCC-CCCCCeECCcCCCCCc----
Confidence            3332       2221 000000     0013578889999988888887776653 332 2444333322111100    


Q ss_pred             ccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          378 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       378 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                              ..+.+.|..+++.++ .+..|.|.-|+
T Consensus       304 --------~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        304 --------NFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             --------ceEEEEEeCCCceEE-ECCCceEEEec
Confidence                    014677776666555 55568887665

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.25  E-value=6.7  Score=36.55  Aligned_cols=105  Identities=10%  Similarity=0.129  Sum_probs=66.9

Q ss_pred             CCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721          216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (457)
Q Consensus       216 ~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l  294 (457)
                      ...++|.++.|++|.+.+|.- .+++|.+++.. +.+......   .+.+..+..|....|..+  .-+|.-...| +.+
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~-~d~~~l~~~---~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~  136 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI-PDNSQLEYT---QECKTKNANILGFCWTSS--TEIAFITDQG-IEF  136 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecC-CCchhhHHH---HHhccCcceeEEEEEecC--eeEEEEecCC-eEE
Confidence            345599999999999999998 99999999985 332221110   113344566889999876  3455555555 567


Q ss_pred             EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      |.....+..   .+..+             .|+..|..-.|.++-+.+.
T Consensus       137 y~v~pekrs---lRlVk-------------s~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  137 YQVLPEKRS---LRLVK-------------SHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             EEEchhhhh---hhhhh-------------hcccCccEEEEccccceEe
Confidence            765543311   12222             2345677777777766554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.10  E-value=5.6  Score=37.13  Aligned_cols=33  Identities=21%  Similarity=0.119  Sum_probs=19.4

Q ss_pred             CCceEEEEEecCCccEEEE-EccCCeEEEEEccCC
Q 012721          267 TEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQS  300 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~-~~~dg~i~lwd~~~~  300 (457)
                      ..-|+.|..+.|. ++|.. +-.+|.|+.||+...
T Consensus       311 P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  311 PPLITDILISLDD-RFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             ------EEE-TTS--EEEEEETTTTEEEEEE-SST
T ss_pred             CCceEeEEEccCC-CEEEEEcccCCcEEEEecCCC
Confidence            3568999999998 66655 458999999999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=91.96  E-value=13  Score=36.26  Aligned_cols=26  Identities=12%  Similarity=-0.061  Sum_probs=21.3

Q ss_pred             CEEEEeeCCCeEEEEEecccceeEEE
Q 012721          128 SMFILSTNDKTIKLWKVRDQKVKKIK  153 (457)
Q Consensus       128 ~~l~s~s~d~~i~vw~~~~~~~~~~~  153 (457)
                      ..++.++.++.|..+|.++|+..-..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeee
Confidence            57888888999999999999876543

The alignment model contains an 8-bladed beta-propeller.

>PRK13684 Ycf48-like protein; Provisional

Probab=91.92  E-value=10  Score=34.87  Aligned_cols=118  Identities=9%  Similarity=0.005  Sum_probs=68.7

Q ss_pred             CCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      -...++++.+.+++..++.+..|.+.+=..+ .+.........   .......+.++.+.|++ ..+++ +.+|.+. ..
T Consensus       213 ~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~~---~~~~~~~l~~v~~~~~~-~~~~~-G~~G~v~-~S  285 (334)
T PRK13684        213 SSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPIIP---EITNGYGYLDLAYRTPG-EIWAG-GGNGTLL-VS  285 (334)
T ss_pred             CcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccCC---ccccccceeeEEEcCCC-CEEEE-cCCCeEE-Ee
Confidence            3457889999999998888877776543333 44444321110   01122457888999887 65554 4567554 33


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEec
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI  355 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~  355 (457)
                      ...++       .|.. ...+      ..-....+.+.|..+++.+++|..|.|--|+-
T Consensus       286 ~d~G~-------tW~~-~~~~------~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        286 KDGGK-------TWEK-DPVG------EEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             CCCCC-------CCeE-CCcC------CCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence            33332       2221 0000      00013577888888888888888888887764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.85  E-value=3.7  Score=38.58  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=51.3

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc----eEEEEEec------------
Q 012721          215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV----ITSAEFHP------------  277 (457)
Q Consensus       215 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----i~~v~~~p------------  277 (457)
                      ......+.+++.+|++++.++. .-|.|.++|+. .+..++++       ++..+.    +....-..            
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrmW-------KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~  375 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRMW-------KGYRDAQCGWIEVPEEGDRDRSNSNSPKSS  375 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhhh-------ccCccceEEEEEeecccccccccccccCCC
Confidence            4555668899999999988888 78999999998 66666553       333221    11000000            


Q ss_pred             -C-CccEEEEEccCCeEEEEEccCCe
Q 012721          278 -I-YCNLLAYSSSRGFVRLVDMRQSA  301 (457)
Q Consensus       278 -~-~~~~l~~~~~dg~i~lwd~~~~~  301 (457)
                       . .--+++.+-.-|.|.||+++++.
T Consensus       376 ~~~~l~LvIyaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  376 SRFALFLVIYAPRRGILEVWSMRQGP  401 (415)
T ss_pred             CcceEEEEEEeccCCeEEEEecCCCC
Confidence             0 00245566788999999999874

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.53  E-value=3  Score=35.48  Aligned_cols=31  Identities=19%  Similarity=0.099  Sum_probs=24.5

Q ss_pred             CCCCeeEEEeCCCCCEEEEeCCCeEEEEEcC
Q 012721          217 HDFNINSISNNSDCETFVSADDLRINLWNLE  247 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~  247 (457)
                      ....|..+.++.+|.-+++-.+|..+.|+.+
T Consensus        65 ~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   65 SSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            4557888889888877766577888999877

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.38  E-value=21  Score=35.76  Aligned_cols=87  Identities=15%  Similarity=0.151  Sum_probs=49.2

Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEE
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  274 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  274 (457)
                      .|++++...    +.+...+-.|. ++..+.|+.+..+|+...+|++++|++-  +..+....+.   .+.....|..+.
T Consensus        65 ~I~If~~sG----~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~--ge~ie~~svg---~e~~~~~I~ec~  134 (829)
T KOG2280|consen   65 YIRIFNISG----QLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLL--GEFIESNSVG---FESQMSDIVECR  134 (829)
T ss_pred             eEEEEeccc----cchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecc--hhhhcccccc---cccccCceeEEE
Confidence            366666543    33333322333 7889999988888877799999999987  3333221111   122233455555


Q ss_pred             EecCCccEEEEEccCCeEEE
Q 012721          275 FHPIYCNLLAYSSSRGFVRL  294 (457)
Q Consensus       275 ~~p~~~~~l~~~~~dg~i~l  294 (457)
                      +..+|   +++-..+|.+.+
T Consensus       135 ~f~~G---Vavlt~~g~v~~  151 (829)
T KOG2280|consen  135 FFHNG---VAVLTVSGQVIL  151 (829)
T ss_pred             EecCc---eEEEecCCcEEE
Confidence            55566   344444555444

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.32  E-value=0.043  Score=50.62  Aligned_cols=140  Identities=14%  Similarity=0.092  Sum_probs=96.1

Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-e
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~  346 (457)
                      .......|.|.+ .-++.++.+..+..||-.... .      .+.            ...+....++|..++..++.. .
T Consensus        35 v~pi~~~w~~e~-~nlavaca~tiv~~YD~agq~-~------le~------------n~tg~aldm~wDkegdvlavlAe   94 (615)
T KOG2247|consen   35 VGPIIHRWRPEG-HNLAVACANTIVIYYDKAGQV-I------LEL------------NPTGKALDMAWDKEGDVLAVLAE   94 (615)
T ss_pred             cccceeeEecCC-CceehhhhhhHHHhhhhhcce-e------ccc------------CCchhHhhhhhccccchhhhhhh
Confidence            334556788888 558888888899999865431 1      111            002445678888888777643 2


Q ss_pred             -cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       347 -~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                       .+.+++||+.+.....-...+....                .-+.|++....++.+...|.+.|++..+. +...+...
T Consensus        95 k~~piylwd~n~eytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gk  157 (615)
T KOG2247|consen   95 KTGPIYLWDVNSEYTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGK  157 (615)
T ss_pred             cCCCeeechhhhhhHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccch-hhhhhhcc
Confidence             3999999997532222122221111                12789999999999999999999999988 55555666


Q ss_pred             CCCcceeeeeccCCcceec
Q 012721          426 GKNENRKPILQAAPRARRS  444 (457)
Q Consensus       426 ~~~~v~~~~~~p~~~~~~~  444 (457)
                      |...+.+.++.+.+.....
T Consensus       158 h~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen  158 HQRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             cccceeEEEecccceeeec
Confidence            9999999999988766655

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.12  E-value=8.9  Score=35.14  Aligned_cols=57  Identities=19%  Similarity=0.182  Sum_probs=36.1

Q ss_pred             CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC
Q 012721          220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  278 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~  278 (457)
                      .-+.|+|.|||+++++-..|.|++++.. ......+.... ............++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccc
Confidence            3468999999988776699999999943 22212222221 123334567899999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.93  E-value=0.39  Score=48.05  Aligned_cols=104  Identities=16%  Similarity=0.303  Sum_probs=57.1

Q ss_pred             cchhhHHhhhcCCCCCCccc----cCCceEEEEECC---CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccc
Q 012721           11 SLEWKCSQAFGERNPDEELQ----DVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF   83 (457)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~----h~~~V~~~~~s~---~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   83 (457)
                      ..-|++.++-++..+...+.    -...+.-+.|.|   +..++..+..++.|++...++...                 
T Consensus       155 lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-----------------  217 (1283)
T KOG1916|consen  155 LFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-----------------  217 (1283)
T ss_pred             hheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-----------------
Confidence            34467766655543332222    123445566655   567788888889999887765432                 


Q ss_pred             cccCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEec
Q 012721           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  145 (457)
Q Consensus        84 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~  145 (457)
                                 ..+++|.....-..  ..+..+.-++=+ ++||+.|+.++.||.++.|.+.
T Consensus       218 -----------~l~rsHs~~~~d~a--~~~~g~~~l~~l-SpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  218 -----------SLFRSHSQRVTDMA--FFAEGVLKLASL-SPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             -----------HHHHhcCCCcccHH--HHhhchhhheee-CCCCcEEEEeecCCccceeeee
Confidence                       23455651100000  011222222222 6888888888888888888753

>PHA02713 hypothetical protein; Provisional

Probab=89.57  E-value=24  Score=35.17  Aligned_cols=20  Identities=10%  Similarity=0.190  Sum_probs=13.3

Q ss_pred             CCCeEEEEec-C--cEEEEeccC
Q 012721          338 DGQHLLSRDY-M--NLKLWDIRM  357 (457)
Q Consensus       338 ~g~~l~s~~~-~--~i~~wd~~~  357 (457)
                      +|++.+.|+. +  .+..||..+
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CCEEEEEeeecceeehhhcCccc
Confidence            5677777753 4  677777764

>PHA02713 hypothetical protein; Provisional

Probab=89.38  E-value=19  Score=35.80  Aligned_cols=22  Identities=18%  Similarity=0.126  Sum_probs=18.6

Q ss_pred             CCcEEEEEeCCC--cEEEEecCCC
Q 012721          395 DGLHFATGSYSN--LLRIFSHGVG  416 (457)
Q Consensus       395 d~~~l~s~~~dg--~i~iw~~~~~  416 (457)
                      ++++.++|+.|+  .+..||..+.
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcccc
Confidence            788888999888  7888888877

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.33  E-value=13  Score=34.77  Aligned_cols=185  Identities=11%  Similarity=0.016  Sum_probs=94.5

Q ss_pred             eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceee-eeecCCCcccCCCCceE-EE
Q 012721          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFN-IVDMKPSNMDDLTEVIT-SA  273 (457)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~-~v  273 (457)
                      +++...+.....+.++.+ ..-...|..+-..|||+.+..-...++.++++.......+ +.+..+   ......|+ .+
T Consensus       199 ~~~L~g~~t~q~e~i~~L-~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dsp---g~~~~~Vte~l  274 (733)
T COG4590         199 IQILRGDRTTQQEIIRLL-SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSP---GDSRHQVTEQL  274 (733)
T ss_pred             hhhhhcccCchhhhhhhc-CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCC---CchHHHHHHHH
Confidence            333333333333333332 4445567788889999999887558899999873222111 111100   00001122 11


Q ss_pred             EEecCCccEEEEEccCCeEEEE-EccCCe-eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcE
Q 012721          274 EFHPIYCNLLAYSSSRGFVRLV-DMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  350 (457)
Q Consensus       274 ~~~p~~~~~l~~~~~dg~i~lw-d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i  350 (457)
                      ..-..| ..++.++.||.|.-| |.+.+. ...++++.++-   .          ..++..+.-..+.+-+++-+. |++
T Consensus       275 ~lL~Gg-~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l---~----------pa~~~~l~pe~~rkgF~~l~~~G~L  340 (733)
T COG4590         275 YLLSGG-FSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKL---A----------PAEVQFLLPETNRKGFYSLYRNGTL  340 (733)
T ss_pred             HHHhCc-eeEEEEcCCCceeeeeeeecCCCCcceeeecccc---C----------cccceeeccccccceEEEEcCCCce
Confidence            122334 677888889988766 554432 11122222222   0          122333322222333444443 777


Q ss_pred             EEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       351 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      .++.... .+++-.-...+..                --+++||.+.++++-.. |.|+++.+++.
T Consensus       341 ~~f~st~-~~~lL~~~~~~~~----------------~~~~~Sp~~~~Ll~e~~-gki~~~~l~Nr  388 (733)
T COG4590         341 QSFYSTS-EKLLLFERAYQAP----------------QLVAMSPNQAYLLSEDQ-GKIRLAQLENR  388 (733)
T ss_pred             eeeeccc-CcceehhhhhcCc----------------ceeeeCcccchheeecC-CceEEEEecCC
Confidence            7665533 3332221112221                25899999999986654 78999999887

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.09  E-value=26  Score=35.10  Aligned_cols=38  Identities=16%  Similarity=0.191  Sum_probs=30.4

Q ss_pred             cceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEee
Q 012721          328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  366 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~  366 (457)
                      +.+..+..||+.++|+--++ |.|.+-+.+. .+.+..+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~  255 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFN  255 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccC
Confidence            56888999999999997765 9999988875 56665555

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.80  E-value=13  Score=31.15  Aligned_cols=30  Identities=10%  Similarity=0.027  Sum_probs=24.0

Q ss_pred             CCCeeEEEeCCCCCEEEEeCCCeEEEEEcC
Q 012721          218 DFNINSISNNSDCETFVSADDLRINLWNLE  247 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~  247 (457)
                      ..+..+++..|-...|+.|.++.+.+|.+.
T Consensus       134 ~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~  163 (215)
T PF14761_consen  134 SEPPLCIACCPVTGNLLVGCGNKLVLFTLK  163 (215)
T ss_pred             CCCCCEEEecCCCCCEEEEcCCEEEEEEEE
Confidence            557788888886667777878899999887

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.29  E-value=34  Score=35.37  Aligned_cols=44  Identities=7%  Similarity=0.039  Sum_probs=27.8

Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeEEecC---CCcceeeeeccCCcce
Q 012721          398 HFATGSYSNLLRIFSHGVGSAGGITVEAG---KNENRKPILQAAPRAR  442 (457)
Q Consensus       398 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~  442 (457)
                      .++.++.+|.+++.|-++|+ .+...+..   .+.+..-..+|++|..
T Consensus       461 ~v~~~~K~G~~~vlDr~tG~-~l~~~~e~~vp~~~~~ge~~sptQp~~  507 (764)
T TIGR03074       461 ALVAPTKQGQIYVLDRRTGE-PIVPVEEVPVPQGAVPGERYSPTQPFS  507 (764)
T ss_pred             EEEEECCCCEEEEEECCCCC-EEeeceeecCCccCCCCcccccccccc
Confidence            78899999999999999994 44433222   2223334445555444

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.73  E-value=6.8  Score=41.56  Aligned_cols=80  Identities=23%  Similarity=0.327  Sum_probs=54.4

Q ss_pred             CCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCC-------cceeeeeecC-------C--Cccc-CCCCceEEEEEecCCc
Q 012721          218 DFNINSISNNSDCETFVSADDLRINLWNLEIS-------DQCFNIVDMK-------P--SNMD-DLTEVITSAEFHPIYC  280 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~-------~~~~~~~~~~-------~--~~~~-~~~~~i~~v~~~p~~~  280 (457)
                      ...|+|+....+|+.+++|.||  .+|.+.-.       .++.++--.+       |  .++. .+.++|..++..... 
T Consensus       178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-  254 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-  254 (1311)
T ss_pred             CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-
Confidence            5578899988899999999666  44443211       1111110000       0  1223 567899999999887 


Q ss_pred             cEEEEEccCCeEEEEEccCC
Q 012721          281 NLLAYSSSRGFVRLVDMRQS  300 (457)
Q Consensus       281 ~~l~~~~~dg~i~lwd~~~~  300 (457)
                      +++.+-++.|+|.+||+...
T Consensus       255 ~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             ceeeeeccCceEEEEEccCC
Confidence            89999999999999999874

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.87  E-value=28  Score=32.81  Aligned_cols=155  Identities=8%  Similarity=0.020  Sum_probs=81.9

Q ss_pred             eeEEEeCCCCCEEEEeCCCeEE-EEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721          221 INSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~  299 (457)
                      ...+..++++.+++.+..|.+. -||--  ....+..      -......++.+.+.+++ .+++++ .+|.+. +....
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~------~~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~-~S~d~  309 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH------NRASARRIQNMGWRADG-GLWLLT-RGGGLY-VSKGT  309 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe------cCCCccceeeeeEcCCC-CEEEEe-CCceEE-EecCC
Confidence            4455667888888888555443 34422  1111221      11234568899999998 766655 556543 33333


Q ss_pred             CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccccccc
Q 012721          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  379 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  379 (457)
                      ++...  ...+..   .+.     ..-...+..+.|.+++..+++|..|.+....-  .++.............      
T Consensus       310 G~~~~--~~~f~~---~~~-----~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~~------  371 (398)
T PLN00033        310 GLTEE--DFDFEE---ADI-----KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIAA------  371 (398)
T ss_pred             CCccc--ccceee---ccc-----CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCCc------
Confidence            21000  001111   000     00013588999999999999998887776543  2555444332111100      


Q ss_pred             CCCCccccceEEEcCCCcEEEEEeCCCcEEEE
Q 012721          380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  411 (457)
Q Consensus       380 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw  411 (457)
                         .   .+.+.|.++++.++ .+.+|.|.-|
T Consensus       372 ---~---ly~v~f~~~~~g~~-~G~~G~il~~  396 (398)
T PLN00033        372 ---N---LYSVKFFDDKKGFV-LGNDGVLLRY  396 (398)
T ss_pred             ---c---eeEEEEcCCCceEE-EeCCcEEEEe
Confidence               1   15788877766555 4456776554

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.59  E-value=35  Score=33.68  Aligned_cols=27  Identities=26%  Similarity=0.261  Sum_probs=22.0

Q ss_pred             cCCc--cEEEEEccCCeEEEEEccCCeee
Q 012721          277 PIYC--NLLAYSSSRGFVRLVDMRQSALC  303 (457)
Q Consensus       277 p~~~--~~l~~~~~dg~i~lwd~~~~~~~  303 (457)
                      .+|.  ..++.+..+|.+.+.|.++++.+
T Consensus       310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            4552  37889999999999999999764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.48  E-value=13  Score=28.52  Aligned_cols=80  Identities=15%  Similarity=0.262  Sum_probs=49.8

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (457)
Q Consensus        36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (457)
                      ..-.|......|+.++..|.|.|++.......                            ... ..   ..++-+..+..
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~----------------------------~~~-~~---~~i~~LNin~~   49 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQR----------------------------TGR-QD---SDISFLNINQE   49 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccc----------------------------ccc-cc---CceeEEECCCc
Confidence            34567777778999999999999997655431                            000 00   11344455567


Q ss_pred             EEEEEEEe---cCCCCEEEEeeCCCeEEEEEecccc
Q 012721          116 INRVRWCA---APNGSMFILSTNDKTIKLWKVRDQK  148 (457)
Q Consensus       116 V~~v~~~~---s~~~~~l~s~s~d~~i~vw~~~~~~  148 (457)
                      |++++--+   ......|+.|+.. ++..||+.+..
T Consensus        50 italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~   84 (136)
T PF14781_consen   50 ITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNS   84 (136)
T ss_pred             eEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCc
Confidence            88875532   2334566666654 57899988764

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.43  E-value=15  Score=36.63  Aligned_cols=34  Identities=21%  Similarity=0.439  Sum_probs=29.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK   65 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~   65 (457)
                      ...++++.-+|.|+.++.+..||.|++|+.....
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~   47 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR   47 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence            5578889999999999999999999999976543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=85.36  E-value=26  Score=31.14  Aligned_cols=29  Identities=10%  Similarity=0.222  Sum_probs=24.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 012721           34 IVSAIEFDKTGDYLAVGDRGGRVILFETV   62 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~   62 (457)
                      .-+-|+|+|.+.+-++....+...+||..
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~   52 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGN   52 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCC
Confidence            34779999999887877777889999986

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.94  E-value=8.7  Score=31.28  Aligned_cols=31  Identities=29%  Similarity=0.241  Sum_probs=25.7

Q ss_pred             ceEEEEEecCC-----ccEEEEEccCCeEEEEEccC
Q 012721          269 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       269 ~i~~v~~~p~~-----~~~l~~~~~dg~i~lwd~~~  299 (457)
                      .+..++|+|.|     ..+|++...+|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78899999954     24889999999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=84.93  E-value=37  Score=32.51  Aligned_cols=33  Identities=9%  Similarity=0.183  Sum_probs=25.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG   64 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~   64 (457)
                      -+..+.|+|.|||++|++--..|.|++++..++
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~   61 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG   61 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence            456799999999988877554699999875544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.52  E-value=4.9  Score=23.22  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=23.2

Q ss_pred             cCCCeEEEEe--cCcEEEEeccCCCCceeEeeeccc
Q 012721          337 NDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       337 ~~g~~l~s~~--~~~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                      |++++|++++  ++.|.++|..+ .+.+..+.....
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~   35 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGY   35 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCC
Confidence            5777777654  39999999975 677766665433

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.23  E-value=0.19  Score=46.56  Aligned_cols=100  Identities=10%  Similarity=0.092  Sum_probs=65.2

Q ss_pred             CeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCccc-CCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          220 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      ....++|..++..++. + ..+.+.+||+.+ ....++ +     .. .|...  -+.|++.+ ..++.+...|.+.+++
T Consensus        76 ~aldm~wDkegdvlavlAek~~piylwd~n~-eytqqL-E-----~gg~~s~s--ll~wsKg~-~el~ig~~~gn~viyn  145 (615)
T KOG2247|consen   76 KALDMAWDKEGDVLAVLAEKTGPIYLWDVNS-EYTQQL-E-----SGGTSSKS--LLAWSKGT-PELVIGNNAGNIVIYN  145 (615)
T ss_pred             hHhhhhhccccchhhhhhhcCCCeeechhhh-hhHHHH-h-----ccCcchHH--HHhhccCC-ccccccccccceEEEe
Confidence            4456777777776655 4 889999999983 322221 0     11 12222  26788888 8888888999999999


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ..+...      ....           ..|...++++++.+.+..+..++
T Consensus       146 hgtsR~------iiv~-----------Gkh~RRgtq~av~lEd~vil~dc  178 (615)
T KOG2247|consen  146 HGTSRR------IIVM-----------GKHQRRGTQIAVTLEDYVILCDC  178 (615)
T ss_pred             ccchhh------hhhh-----------cccccceeEEEecccceeeecCc
Confidence            877532      1111           22567899999998876555443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=84.09  E-value=48  Score=33.09  Aligned_cols=63  Identities=11%  Similarity=0.038  Sum_probs=33.3

Q ss_pred             CCCEEEEe-CCC-----eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE-ecCCccEEEEEccCC------eEEEE
Q 012721          229 DCETFVSA-DDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-HPIYCNLLAYSSSRG------FVRLV  295 (457)
Q Consensus       229 ~~~~l~~~-~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~-~p~~~~~l~~~~~dg------~i~lw  295 (457)
                      +|.+.+.| .||     ++-.||..+  ..+...       ..........+. .-+| .+.++|+.++      ++..|
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~--~~W~~v-------a~m~~~r~~~gv~~~~g-~iYi~GG~~~~~~~l~sve~Y  449 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVT--NKWTPV-------APMLTRRSGHGVAVLGG-KLYIIGGGDGSSNCLNSVECY  449 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCC--Cccccc-------CCCCcceeeeEEEEECC-EEEEEcCcCCCccccceEEEE
Confidence            57777777 664     466777662  222221       111112222222 2344 7788887554      46778


Q ss_pred             EccCCe
Q 012721          296 DMRQSA  301 (457)
Q Consensus       296 d~~~~~  301 (457)
                      |..+++
T Consensus       450 DP~t~~  455 (571)
T KOG4441|consen  450 DPETNT  455 (571)
T ss_pred             cCCCCc
Confidence            887754

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=83.97  E-value=47  Score=32.83  Aligned_cols=27  Identities=15%  Similarity=0.310  Sum_probs=21.9

Q ss_pred             EEcCCCc---EEEEEeCCCcEEEEecCCCC
Q 012721          391 SVSGDGL---HFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       391 ~~s~d~~---~l~s~~~dg~i~iw~~~~~~  417 (457)
                      .+..+|+   .++.+..+|.+++.|-.+|+
T Consensus       307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             EeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence            3334665   78899999999999999994

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.93  E-value=10  Score=30.92  Aligned_cols=29  Identities=14%  Similarity=0.079  Sum_probs=24.2

Q ss_pred             cceEEEcCCC------cEEEEEeCCCcEEEEecCC
Q 012721          387 KFECSVSGDG------LHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       387 v~~~~~s~d~------~~l~s~~~dg~i~iw~~~~  415 (457)
                      +..++|||-|      .+|++-..++.|.||.-..
T Consensus        88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            4789999944      5888999999999999764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.84  E-value=42  Score=32.24  Aligned_cols=83  Identities=11%  Similarity=0.171  Sum_probs=46.4

Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccC-C---eeecc----ccccccccccccCcccceec-cccceEEEEEccC
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-S---ALCDH----SARILRDAAESHGSKSFFTE-IIASISDIKFAND  338 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~-~---~~~~~----~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~  338 (457)
                      -.|..+..++.| ..++..+.+|.+.++=.+. |   ...+.    ..+++..      ....|.. ..-.+..++|+|+
T Consensus       104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i------~~~~ftss~~ltl~Qa~WHP~  176 (741)
T KOG4460|consen  104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV------AERFFTSSTSLTLKQAAWHPS  176 (741)
T ss_pred             EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc------cceeeccCCceeeeeccccCC
Confidence            346778889999 8888888888665542111 0   00000    0011111      0111111 1124667899997


Q ss_pred             C----CeEEEEecCcEEEEeccC
Q 012721          339 G----QHLLSRDYMNLKLWDIRM  357 (457)
Q Consensus       339 g----~~l~s~~~~~i~~wd~~~  357 (457)
                      .    .+++-.+|+.|++||+..
T Consensus       177 S~~D~hL~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  177 SILDPHLVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             ccCCceEEEEecCcEEEEEecCC
Confidence            5    444556779999999965

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.39  E-value=6.6  Score=22.65  Aligned_cols=31  Identities=16%  Similarity=0.134  Sum_probs=21.7

Q ss_pred             CCCcEEEEEe-CCCcEEEEecCCCCceeeEEec
Q 012721          394 GDGLHFATGS-YSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       394 ~d~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      |++++|+++. .+++|.++|..++ .....+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~-~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATN-KVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCC-eEEEEEEC
Confidence            5677676655 4789999999887 44455544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=82.57  E-value=59  Score=33.08  Aligned_cols=70  Identities=10%  Similarity=0.154  Sum_probs=41.6

Q ss_pred             eEEEeCCCCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721          222 NSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw  295 (457)
                      ..++|-|+|..+++- .|     ..|.++..+  +....-+++    -.+....+..++|+-.. ..++. ...+.|++|
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErN--GLrHGef~l----r~~~dEk~~~~~wn~~s-~vlav-~~~n~~~lw  321 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERN--GLRHGEFDL----RVGCDEKAFLENWNLLS-TVLAV-AEGNLLKLW  321 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccC--CcccCCccc----cCCchhhhhhhhhhHHH-HHHHH-hhcceEEEE
Confidence            468999999999983 33     245555544  322211111    12344567778887765 44443 456779999


Q ss_pred             EccC
Q 012721          296 DMRQ  299 (457)
Q Consensus       296 d~~~  299 (457)
                      -..+
T Consensus       322 ttkN  325 (1243)
T COG5290         322 TTKN  325 (1243)
T ss_pred             Eccc
Confidence            7665

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=82.20  E-value=34  Score=29.92  Aligned_cols=181  Identities=13%  Similarity=0.065  Sum_probs=99.3

Q ss_pred             CCCeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721          218 DFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l  294 (457)
                      ......+.|..++.++-+.   ....|+.+|+. .++..+...+++      ...--.++...+  .+....-.++...+
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~-tg~~~~~~~l~~------~~FgEGit~~~d--~l~qLTWk~~~~f~  114 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLE-TGKVLQSVPLPP------RYFGEGITILGD--KLYQLTWKEGTGFV  114 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETT-TSSEEEEEE-TT------T--EEEEEEETT--EEEEEESSSSEEEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECC-CCcEEEEEECCc------cccceeEEEECC--EEEEEEecCCeEEE
Confidence            3345678886677776664   34589999999 566555443332      122334445443  55566668899999


Q ss_pred             EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeecccccc
Q 012721          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRP  373 (457)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~  373 (457)
                      ||..+-+..    ..+.-              .+.=+.++  .+++.|+..+. ..++++|..+ .+....+.......+
T Consensus       115 yd~~tl~~~----~~~~y--------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~p  173 (264)
T PF05096_consen  115 YDPNTLKKI----GTFPY--------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRP  173 (264)
T ss_dssp             EETTTTEEE----EEEE---------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE
T ss_pred             EccccceEE----EEEec--------------CCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCEE
Confidence            999876543    22222              12345666  55666666544 8999999865 566666554433211


Q ss_pred             ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe---------------cCCCcceeeeeccC
Q 012721          374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE---------------AGKNENRKPILQAA  438 (457)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---------------~~~~~v~~~~~~p~  438 (457)
                                +..+..+.|- +|...|-.=....|..-|..+| .....+.               ......+.+++.|.
T Consensus       174 ----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~  241 (264)
T PF05096_consen  174 ----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE  241 (264)
T ss_dssp             -------------EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred             ----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence                      0011345554 6666665555667777888888 3333221               11345688888776


Q ss_pred             Cc
Q 012721          439 PR  440 (457)
Q Consensus       439 ~~  440 (457)
                      ..
T Consensus       242 ~~  243 (264)
T PF05096_consen  242 TD  243 (264)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.32  E-value=52  Score=35.45  Aligned_cols=173  Identities=12%  Similarity=0.121  Sum_probs=86.7

Q ss_pred             EEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE--------ecCCccEEEEEccCCeEEE
Q 012721          223 SISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--------HPIYCNLLAYSSSRGFVRL  294 (457)
Q Consensus       223 ~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--------~p~~~~~l~~~~~dg~i~l  294 (457)
                      .+-+-|.=...-..-|+.+.+|+.+..++.. .       +.+....|..|..        .|.= ++++.-..--.|.+
T Consensus        83 ~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~-~-------~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~i  153 (1311)
T KOG1900|consen   83 DMGIFPEIGRAWITIDNNLFLWNYESDNELA-E-------YDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIVI  153 (1311)
T ss_pred             eeccchhhcceEEEeCCeEEEEEcCCCCccc-c-------ccchhhhheeeeeecCCCCcchhhh-heeEEecccceEEE
Confidence            3444454445555578999999999534332 2       3334444555443        2322 23333334444555


Q ss_pred             EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccC--C----CCceeEeeec
Q 012721          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM--D----STPVATFKIH  368 (457)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~--~----~~~~~~~~~~  368 (457)
                      +-+.-.+.... ...+..+       -.+......|.++....+|+.+.+|.||  .+|.+.-  .    ++....+...
T Consensus       154 lgV~~~~~~~~-~~~f~~~-------~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt  223 (1311)
T KOG1900|consen  154 LGVSFDEFTGE-LSIFNTS-------FKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLT  223 (1311)
T ss_pred             EEEEeccccCc-ccccccc-------eeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCc
Confidence            54433221110 0111110       0001113568899988999999999887  4554421  0    1100011000


Q ss_pred             ----cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721          369 ----EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       369 ----~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                          ...++.+..+. ....-+|..+........+.+-++.|+|.+|++..
T Consensus       224 ~s~ls~lvPs~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  224 KSVLSSLVPSLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhHHHHhhhhhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence                00011111111 00111336888887788999999999999999986

>PRK10115 protease 2; Provisional

Probab=81.14  E-value=70  Score=32.87  Aligned_cols=69  Identities=13%  Similarity=0.042  Sum_probs=36.9

Q ss_pred             eEEEeCCCCCEEEEe-C-C-----CeEEEEEcCCCc-ceeeeeecCCCcccCCCCceE-EEEEecCCccEEEEEc---cC
Q 012721          222 NSISNNSDCETFVSA-D-D-----LRINLWNLEISD-QCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSS---SR  289 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~-~-d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~-~v~~~p~~~~~l~~~~---~d  289 (457)
                      ..++|.+|++.|+.. . +     ..|+.+++.+.. +...++       ++...... .+..+.++ .+++..+   .+
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~-------~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~  246 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVY-------EEKDDTFYVSLHKTTSK-HYVVIHLASATT  246 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEE-------eeCCCCEEEEEEEcCCC-CEEEEEEECCcc
Confidence            458999988876664 3 2     367788887432 222232       22222222 23333366 5544443   34


Q ss_pred             CeEEEEEcc
Q 012721          290 GFVRLVDMR  298 (457)
Q Consensus       290 g~i~lwd~~  298 (457)
                      +.+.+|+..
T Consensus       247 ~~~~l~~~~  255 (686)
T PRK10115        247 SEVLLLDAE  255 (686)
T ss_pred             ccEEEEECc
Confidence            578888853

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=80.67  E-value=52  Score=31.06  Aligned_cols=116  Identities=9%  Similarity=0.057  Sum_probs=67.2

Q ss_pred             CCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceee--eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721          217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFN--IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l  294 (457)
                      ....+..+.+.+++..++++.+|.+..=+-  .++...  .+..  .........+.++.|.+++ ..+++ +..|.+..
T Consensus       279 ~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d--~G~~~~~~~f~~--~~~~~~~~~l~~v~~~~d~-~~~a~-G~~G~v~~  352 (398)
T PLN00033        279 SARRIQNMGWRADGGLWLLTRGGGLYVSKG--TGLTEEDFDFEE--ADIKSRGFGILDVGYRSKK-EAWAA-GGSGILLR  352 (398)
T ss_pred             CccceeeeeEcCCCCEEEEeCCceEEEecC--CCCcccccceee--cccCCCCcceEEEEEcCCC-cEEEE-ECCCcEEE
Confidence            345678899999999998887777655332  232111  1100  0011122458889999887 65554 56676555


Q ss_pred             EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEE
Q 012721          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  353 (457)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~w  353 (457)
                      .. ..++       .|.. ....      ..-...++.+.|.++++.+++|.+|.|.-|
T Consensus       353 s~-D~G~-------tW~~-~~~~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        353 ST-DGGK-------SWKR-DKGA------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             eC-CCCc-------ceeE-cccc------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            43 3332       2221 0000      011246789999988999999988877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	457
3dw8_B	447	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		3e-97

>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447

Iteration: 1
 Score =  352 bits (903), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/429 (44%), Positives = 267/429 (62%), Gaps = 43/429 (10%)
Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           ++W  SQ  G    D+++ + DI+S +EF+ +G+ LA GD+GGRV++F+           
Sbjct: 10  IQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57
Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
                 E++    S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+
Sbjct: 58  ------EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111
Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
           LSTNDKTIKLWK        I E D  P    E   L E++    +  P+      +   
Sbjct: 112 LSTNDKTIKLWK--------ISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVF 157
Query: 192 ENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQ 251
             M          V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+
Sbjct: 158 RPMDLM-------VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDR 210
Query: 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311
            FNIVD+KP+NM++LTEVIT+AEFHP  CN   YSSS+G +RL DMR SALCD  +++  
Sbjct: 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270
Query: 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 371
           +  E   ++SFF+EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+L
Sbjct: 271 E-PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL 329
Query: 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431
           R KLC LY ND IFDKFEC  +G      TGSY+N  R+F     +   IT+EA + EN 
Sbjct: 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENN 386
Query: 432 KPILQAAPR 440
           KP     PR
Sbjct: 387 KPRTVLKPR 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	457
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.66
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.64
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.64
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.62
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.51
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.47
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.46
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.43
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.4
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.4
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.4
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.35
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.34
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.33
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.32
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.31
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.25
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.13
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.13
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.09
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.09
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.09
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.05
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.0
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.0
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.98
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.95
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.83
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.75
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.74
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.72
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.72
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.69
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.69
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.68
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.67
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.64
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.63
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.63
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.56
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.54
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.52
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.49
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.48
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.46
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.39
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.39
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.38
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.37
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.36
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.35
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.34
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.31
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.3
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.27
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.26
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.25
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.25
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.24
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.23
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.17
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.16
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.16
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.1
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.05
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.03
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.89
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.88
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.88
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.86
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.85
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.83
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.77
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.73
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.63
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.6
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.57
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.54
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.49
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.49
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.48
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.45
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.44
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.39
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.35
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.31
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.31
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.31
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.23
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.2
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.1
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.1
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.99
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.96
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.96
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.92
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.88
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.73
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.63
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.57
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.52
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.41
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.24
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.15
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.82
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.79
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.79
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.63
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.3
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.29
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.25
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.12
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.98
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.25
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.72
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.5
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.1
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.7
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.23
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.44
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	89.94
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.63
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	87.93
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.7
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	87.57
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	86.43
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.26
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	85.77
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.72
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	84.67
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	83.48
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	82.73
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.24
3ott_A	758	Two-component system sensor histidine kinase; beta	80.17

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.4e-45  Score=350.11  Aligned_cols=397  Identities=46%  Similarity=0.815  Sum_probs=294.3

Q ss_pred             ccccchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccC
Q 012721            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS   87 (457)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (457)
                      ......|++.|.|++  ....++|.+.|++++|+|+|++||+|+.||.|+||++.+++...                ...
T Consensus         6 ~~~~~~w~~~q~~~~--~~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~----------------~~~   67 (447)
T 3dw8_B            6 GGNDIQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ----------------SHS   67 (447)
T ss_dssp             --CCCCCEEEECCSC--SSSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC---------------------CCC
T ss_pred             CCcceeEEEEEeccc--ccccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC----------------ccc
Confidence            445678999999988  45568899999999999999999999999999999998765310                011


Q ss_pred             CCccceeeeeccCCccccccccccccCcEEEEEEEecCCC--CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeee
Q 012721           88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (457)
Q Consensus        88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~--~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  165 (457)
                      ..++++...+.+|.++|++++++.+++.|.+++|  ++++  .+|++++.|++|++|++.++...... ....       
T Consensus        68 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~--~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~-------  137 (447)
T 3dw8_B           68 RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW--LPQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLK-------  137 (447)
T ss_dssp             CCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE--CCCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC-------
T ss_pred             ccceeEecccccccccccccccccccCceEEEEE--cCCCCcceEEEeCCCCeEEEEecccccCCcce-eccc-------
Confidence            1255678889999999999999999999999999  5665  79999999999999999876543210 0000       


Q ss_pred             eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEE
Q 012721          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWN  245 (457)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd  245 (457)
                        ..+|.......      .....+     ..+...+......+.+.+..+|...|.+++|+|++++|++|.|+.|++||
T Consensus       138 --~~~g~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd  204 (447)
T 3dw8_B          138 --EEDGRYRDPTT------VTTLRV-----PVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWH  204 (447)
T ss_dssp             ----------CCC------CCSCCC-----CEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEE
T ss_pred             --CccccccCccc------ccceEe-----ccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEE
Confidence              00111100000      000000     00000000112233444447899999999999999999999999999999


Q ss_pred             cCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec
Q 012721          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (457)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (457)
                      ++..+....++..++..+.+|...|.+++|+|+++.+|++|+.||.|++||+++++........+.. +..+.....+.+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  283 (447)
T 3dw8_B          205 LEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFSE  283 (447)
T ss_dssp             TTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECC-C-----CCHHHH
T ss_pred             CCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEecc-CCCccccccccc
Confidence            9865667776666666788999999999999997689999999999999999988654333355555 223333445566


Q ss_pred             cccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721          326 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  405 (457)
Q Consensus       326 h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  405 (457)
                      |...|.+++|+|+|++|++++++.|++||++..++++..+.+|......++..+..+++++++.++|+|++++|++|+.|
T Consensus       284 ~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d  363 (447)
T 3dw8_B          284 IISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN  363 (447)
T ss_dssp             HTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST
T ss_pred             cCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccC
Confidence            77799999999999999998779999999986578889999998777666677777787777789999999999999999


Q ss_pred             CcEEEEecCCCCceeeEEecC---------------------------------CCcceeeeeccCCcceeccccc
Q 012721          406 NLLRIFSHGVGSAGGITVEAG---------------------------------KNENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       406 g~i~iw~~~~~~~~~~~~~~~---------------------------------~~~v~~~~~~p~~~~~~~~~~~  448 (457)
                      |.|++||+.+++ . ..+++|                                 ...+..++|||++...+.+-++
T Consensus       364 g~v~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~  437 (447)
T 3dw8_B          364 NFFRMFDRNTKR-D-ITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN  437 (447)
T ss_dssp             TEEEEEETTTCC-E-EEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred             CEEEEEEcCCCc-c-eeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc
Confidence            999999999883 2 344433                                 3567889999999988876544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.9e-43  Score=316.67  Aligned_cols=271  Identities=18%  Similarity=0.190  Sum_probs=232.2

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|++++||+|+.||+|+|||+.++.                           .+..+.+|.       
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~---------------------------~~~~~~~~~-------   55 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV---------------------------EVRSIQVTE-------   55 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS-------
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------------------------eeEEeeccC-------
Confidence            3499999999999999999999999999999998765                           456778888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           .+|.+++|  ++++++|++++.|++|++||+.+++....+                                   
T Consensus        56 -----~~v~~~~~--~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-----------------------------------   93 (304)
T 2ynn_A           56 -----TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVVDF-----------------------------------   93 (304)
T ss_dssp             -----SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------
T ss_pred             -----CcEEEEEE--eCCCCEEEEECCCCEEEEEECCCCcEEEEE-----------------------------------
Confidence                 88999999  678999999999999999999887654331                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                .+|...|.+++|+|++++|++| .|++|++||++........       +.+|.
T Consensus        94 --------------------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-------~~~h~  140 (304)
T 2ynn_A           94 --------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHE  140 (304)
T ss_dssp             --------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE-------ECCCC
T ss_pred             --------------------------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh-------hcccC
Confidence                                      5799999999999999999999 9999999999844344433       67899


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc--CCCeEEEE
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSR  345 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~  345 (457)
                      ..|.+++|+|.++.+|++|+.|++|++||+++....    ..+            ..+|...+..+.|+|  ++.+|+++
T Consensus       141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~------------~~~~~~~v~~~~~~~~~~~~~l~s~  204 (304)
T 2ynn_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTL------------TTGQERGVNYVDYYPLPDKPYMITA  204 (304)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEE------------ECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----cee------------ccCCcCcEEEEEEEEcCCCCEEEEE
Confidence            999999999954389999999999999999875422    111            123456789999986  67899998


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      +. +.|++||++. ++++..+.+|...+               ..++|+|++.+|++|+.||+|++||+.++ +....+.
T Consensus       205 s~D~~i~iWd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~  267 (304)
T 2ynn_A          205 SDDLTIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN  267 (304)
T ss_dssp             ETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEEC
T ss_pred             cCCCeEEEEeCCC-CccceeeCCCCCCE---------------EEEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeecc
Confidence            75 9999999986 78899999998765               68999999999999999999999999998 7888999


Q ss_pred             cCCCcceeeeeccCCcc
Q 012721          425 AGKNENRKPILQAAPRA  441 (457)
Q Consensus       425 ~~~~~v~~~~~~p~~~~  441 (457)
                      .|...+.+++++|++..
T Consensus       268 ~~~~~~~~~~~~~~~~~  284 (304)
T 2ynn_A          268 VGLERSWCIATHPTGRK  284 (304)
T ss_dssp             CSSSSEEEEEECTTCGG
T ss_pred             CCCccEEEEEECCCCCc
Confidence            99999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=317.06  Aligned_cols=273  Identities=15%  Similarity=0.211  Sum_probs=234.2

Q ss_pred             cccCCceEEEEECCC----CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           29 LQDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~----~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      ..|.+.|++++|+|+    +.+||+|+.|++|+||++...+.                         .....+.+|.   
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------------~~~~~l~gh~---   80 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------------DLQWSLEGHQ---   80 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCS---
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------------eeeeeeccCC---
Confidence            359999999999985    67999999999999999986543                         1445688998   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                               ..|.+++|  ++++.++++++.|++|++||+.+++....+                               
T Consensus        81 ---------~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~-------------------------------  118 (321)
T 3ow8_A           81 ---------LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIKSI-------------------------------  118 (321)
T ss_dssp             ---------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEE-------------------------------
T ss_pred             ---------CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEEEE-------------------------------
Confidence                     88999999  788999999999999999999988654432                               


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                                                    ..|...+.+++|+|++++|+++ .|+.|++||++ .+.....       +
T Consensus       119 ------------------------------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~-~~~~~~~-------~  160 (321)
T 3ow8_A          119 ------------------------------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE-SGKKEYS-------L  160 (321)
T ss_dssp             ------------------------------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT-TCSEEEE-------E
T ss_pred             ------------------------------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC-CCceeEE-------e
Confidence                                          3566678899999999999999 99999999998 4444433       4


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      ..|...+.+++|+|++ ++|++|+.||.|++||+++++..    ..             +.+|...|.+++|+|++++|+
T Consensus       161 ~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~----~~-------------~~~h~~~v~~l~~spd~~~l~  222 (321)
T 3ow8_A          161 DTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLL----HT-------------LEGHAMPIRSLTFSPDSQLLV  222 (321)
T ss_dssp             ECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EE-------------ECCCSSCCCEEEECTTSCEEE
T ss_pred             cCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EE-------------EcccCCceeEEEEcCCCCEEE
Confidence            6678889999999999 99999999999999999987543    22             345678899999999999999


Q ss_pred             EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721          344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  422 (457)
Q Consensus       344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~  422 (457)
                      +++. +.|++||++. .+....+.+|...+               .+++|+|++.+|++++.|++|++||+.++ +....
T Consensus       223 s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~  285 (321)
T 3ow8_A          223 TASDDGYIKIYDVQH-ANLAGTLSGHASWV---------------LNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHT  285 (321)
T ss_dssp             EECTTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEE
T ss_pred             EEcCCCeEEEEECCC-cceeEEEcCCCCce---------------EEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEE
Confidence            9875 9999999985 77888888888765               68999999999999999999999999998 77888


Q ss_pred             EecCCCcceeeeeccCCcceec
Q 012721          423 VEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       423 ~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +.+|..+|.+++|+|++....+
T Consensus       286 ~~~h~~~v~~v~~s~~g~~l~s  307 (321)
T 3ow8_A          286 FFDHQDQVWGVKYNGNGSKIVS  307 (321)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEE
T ss_pred             EcCCCCcEEEEEECCCCCEEEE
Confidence            9999999999999999987766

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-43  Score=330.12  Aligned_cols=277  Identities=17%  Similarity=0.258  Sum_probs=241.4

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.++|++++|+|++++||+|+.||+|+|||+.+++                           ....+.+|.       
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~---------------------------~~~~l~~h~-------  150 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---------------------------FERTLKGHT-------  150 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---------------------------CCEEECCCS-------
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEeccC-------
Confidence            4599999999999999999999999999999998776                           346788998       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           +.|.+++|  ++++++|++|+.|++|++||+.+++....                                    
T Consensus       151 -----~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~~~~------------------------------------  187 (410)
T 1vyh_C          151 -----DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRT------------------------------------  187 (410)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEEC------------------------------------
T ss_pred             -----CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeEE------------------------------------
Confidence                 88999999  78999999999999999999987654322                                    


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                              + .+|...|.+++|+|++++|++| .|+.|++||++ .+.+...       +.+|.
T Consensus       188 ------------------------~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~-~~~~~~~-------~~~h~  234 (410)
T 1vyh_C          188 ------------------------M-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKT-------FTGHR  234 (410)
T ss_dssp             ------------------------C-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEE-------EECCS
T ss_pred             ------------------------E-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------EeCCC
Confidence                                    1 6899999999999999999999 99999999998 5666554       57899


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC---------
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---------  338 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---------  338 (457)
                      ..|.++.++|++ .+|++|+.|++|++||+++++..    ..             +.+|...|.+++|+|+         
T Consensus       235 ~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~----~~-------------~~~h~~~v~~~~~~~~~~~~~~~~~  296 (410)
T 1vyh_C          235 EWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECK----AE-------------LREHRHVVECISWAPESSYSSISEA  296 (410)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EE-------------ECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             ccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcee----eE-------------ecCCCceEEEEEEcCcccccchhhh
Confidence            999999999999 99999999999999999886532    11             3456788999999996         


Q ss_pred             -----------CCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          339 -----------GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       339 -----------g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                                 |.+|++|+. +.|++||+++ +.++..+.+|...+               .+++|+|++++|++|+.|+
T Consensus       297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~~~~g~~l~s~s~D~  360 (410)
T 1vyh_C          297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDK  360 (410)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTT
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcE---------------EEEEEcCCCCEEEEEeCCC
Confidence                       668998875 9999999986 78888999998765               6899999999999999999


Q ss_pred             cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccccccc
Q 012721          407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG  452 (457)
Q Consensus       407 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~  452 (457)
                      .|++||+.++ +....+.+|...|.+++|+|+++..++  ++.+..
T Consensus       361 ~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s--gs~D~~  403 (410)
T 1vyh_C          361 TLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVT--GSVDQT  403 (410)
T ss_dssp             EEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEE--EETTSE
T ss_pred             eEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCCCEEEE--EeCCCc
Confidence            9999999988 678889999999999999999988877  444433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.8e-41  Score=309.13  Aligned_cols=276  Identities=14%  Similarity=0.186  Sum_probs=229.5

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|++++|++|+.||+|+|||..+++                           .+..+..|.       
T Consensus        52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~---------------------------~~~~~~~~~-------   97 (340)
T 1got_B           52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN---------------------------KVHAIPLRS-------   97 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC---------------------------EEEEEECSS-------
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC---------------------------cceEeecCC-------
Confidence            3599999999999999999999999999999988765                           345677787       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++|  +|++++|++++.|+.|++|++.++.....                                    
T Consensus        98 -----~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~------------------------------------  134 (340)
T 1got_B           98 -----SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVR------------------------------------  134 (340)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCE------------------------------------
T ss_pred             -----ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcce------------------------------------
Confidence                 78999999  78999999999999999999876532100                                    


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                          ....+ .+|...|.++.|++++. ++++ .|+.|++||++ .++....       +.+|.
T Consensus       135 --------------------~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~-~~~~~~~-------~~~h~  184 (340)
T 1got_B          135 --------------------VSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE-TGQQTTT-------FTGHT  184 (340)
T ss_dssp             --------------------EEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT-TTEEEEE-------ECCCS
T ss_pred             --------------------eEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEECC-CCcEEEE-------EcCCC
Confidence                                01111 68999999999998876 6666 99999999998 5555544       57899


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      ..|.+++|+|++ .+|++|+.||.|++||+++++..    ..             +.+|...|.+++|+|++++|++++.
T Consensus       185 ~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~----~~-------------~~~h~~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          185 GDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR----QT-------------FTGHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEE----EE-------------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeE----EE-------------EcCCcCCEEEEEEcCCCCEEEEEcC
Confidence            999999999999 99999999999999999886432    22             3457789999999999999999875


Q ss_pred             -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                       +.|++||++. ++.+..+..+...             ..+++++|+|++++|++|+.|+.|++||+.++ .....+.+|
T Consensus       247 d~~v~iwd~~~-~~~~~~~~~~~~~-------------~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~~h  311 (340)
T 1got_B          247 DATCRLFDLRA-DQELMTYSHDNII-------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGH  311 (340)
T ss_dssp             TSCEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECC
T ss_pred             CCcEEEEECCC-CcEEEEEccCCcc-------------cceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEeecC
Confidence             9999999985 5555555422211             12368999999999999999999999999988 678889999


Q ss_pred             CCcceeeeeccCCcceec
Q 012721          427 KNENRKPILQAAPRARRS  444 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~  444 (457)
                      ..+|.+++|+|++...++
T Consensus       312 ~~~v~~~~~s~dg~~l~s  329 (340)
T 1got_B          312 DNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             SSCEEEEEECTTSSCEEE
T ss_pred             CCcEEEEEEcCCCCEEEE
Confidence            999999999999988777

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1e-41  Score=315.37  Aligned_cols=280  Identities=14%  Similarity=0.182  Sum_probs=216.7

Q ss_pred             cccCCceEEEEECCCCCEEEEEeC------CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDR------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP  102 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  102 (457)
                      ..|.+.|++++|||||++||+|+.      |+.|++|+..++..                       .........+|. 
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~-----------------------~~~~~~~~~~~~-   94 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP-----------------------NESLCTAGVQTE-   94 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--------------------------CGGGCSEEEECS-
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc-----------------------ceeEecccCCCC-
Confidence            459999999999999999999997      67899998776553                       122333445566 


Q ss_pred             cccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       103 ~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                                 ..|.+++|  ++++ .+++++.||+|++||+.+++.......                           
T Consensus        95 -----------~~V~~~~~--s~d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~---------------------------  133 (357)
T 4g56_B           95 -----------AGVTDVAW--VSEK-GILVASDSGAVELWEILEKESLLVNKF---------------------------  133 (357)
T ss_dssp             -----------SCEEEEEE--ETTT-EEEEEETTSCEEEC--------CCCCE---------------------------
T ss_pred             -----------CCEEEEEE--cCCC-CEEEEECCCEEEEeeccccceeEEEee---------------------------
Confidence                       78999999  5676 567788999999999988754322110                           


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                                                    ...+|...|++++|+|++++|++| .|+.|++||++ .++....      
T Consensus       134 ------------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~------  176 (357)
T 4g56_B          134 ------------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKS------  176 (357)
T ss_dssp             ------------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEE------
T ss_pred             ------------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE------
Confidence                                          015799999999999999999999 99999999998 5555544      


Q ss_pred             cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-C
Q 012721          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-Q  340 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~  340 (457)
                       +.+|...|.+++|+|++..++++++.||.|++||+++++..    ..+.           +..|...+.+++|+|++ .
T Consensus       177 -~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~-----------~~~~~~~v~~v~~sp~~~~  240 (357)
T 4g56_B          177 -YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRID-----------FCASDTIPTSVTWHPEKDD  240 (357)
T ss_dssp             -ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCC-----------CTTCCSCEEEEEECTTSTT
T ss_pred             -EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeee-----------eccccccccchhhhhcccc
Confidence             57899999999999998568999999999999999987533    1111           12345679999999985 6


Q ss_pred             eEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCCCc
Q 012721          341 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSA  418 (457)
Q Consensus       341 ~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~~  418 (457)
                      +|++|+. +.|++||++. ++++..+.+|...+               ++++|+|++ ++|++|+.|++|+|||++++ +
T Consensus       241 ~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~v---------------~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-~  303 (357)
T 4g56_B          241 TFACGDETGNVSLVNIKN-PDSAQTSAVHSQNI---------------TGLAYSYHSSPFLASISEDCTVAVLDADFS-E  303 (357)
T ss_dssp             EEEEEESSSCEEEEESSC-GGGCEEECCCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTSC-E
T ss_pred             eEEEeecccceeEEECCC-CcEeEEEeccceeE---------------EEEEEcCCCCCEEEEEeCCCEEEEEECCCC-c
Confidence            7778765 9999999986 78888888888765               689999987 68999999999999999988 4


Q ss_pred             eeeEEecCCCcceeeeecc-CCcceec
Q 012721          419 GGITVEAGKNENRKPILQA-APRARRS  444 (457)
Q Consensus       419 ~~~~~~~~~~~v~~~~~~p-~~~~~~~  444 (457)
                      .. ...+|.++|++++|+| ++...++
T Consensus       304 ~~-~~~~H~~~V~~vafsP~d~~~l~s  329 (357)
T 4g56_B          304 VF-RDLSHRDFVTGVAWSPLDHSKFTT  329 (357)
T ss_dssp             EE-EECCCSSCEEEEEECSSSTTEEEE
T ss_pred             Ee-EECCCCCCEEEEEEeCCCCCEEEE
Confidence            43 4568999999999999 5655554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.6e-41  Score=332.31  Aligned_cols=338  Identities=18%  Similarity=0.210  Sum_probs=248.5

Q ss_pred             ccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ...|.+.|++++|+|++. +|++|+.|++|++||..+.+                           +...+.+|.     
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~---------------------------~~~~l~~H~-----  190 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK---------------------------FKSTFGEHT-----  190 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE---------------------------EEEEECCCS-----
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe---------------------------Eeeeecccc-----
Confidence            456999999999999987 69999999999999976443                           556788998     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEee------cCCCceeeeeeccccccccccCCCC
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM------DHFPFVSSENTLLAEKNFMNEHNPP  180 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  180 (457)
                             +.|.+++|  +|++++|++++.|++|++||+.+++....+..      .....|.+++|++....++......
T Consensus       191 -------~~V~~v~f--spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~  261 (611)
T 1nr0_A          191 -------KFVHSVRY--NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK  261 (611)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -------CceEEEEE--CCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC
Confidence                   88999999  78999999999999999999998877655432      3455688888887544343333211


Q ss_pred             Cceec-------------------------cCCc----cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC
Q 012721          181 SFAHG-------------------------YHLE----WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE  231 (457)
Q Consensus       181 ~~~~~-------------------------~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  231 (457)
                      ...+.                         .++.    ...++.+++|+.+..   ++.+.+ .+|...|.+++|+|+++
T Consensus       262 ~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~---~~~~~~-~gh~~~v~~l~~spdg~  337 (611)
T 1nr0_A          262 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG---SIDQVR-YGHNKAITALSSSADGK  337 (611)
T ss_dssp             EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT---EEEEEE-CCCSSCEEEEEECTTSS
T ss_pred             eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC---CcceEE-cCCCCCEEEEEEeCCCC
Confidence            11100                         0000    012234555554322   233333 78999999999999999


Q ss_pred             EEEEe-CCCeEEEEEcCCCcceeee-------------------------------eecCCCc-----------------
Q 012721          232 TFVSA-DDLRINLWNLEISDQCFNI-------------------------------VDMKPSN-----------------  262 (457)
Q Consensus       232 ~l~~~-~d~~i~iwd~~~~~~~~~~-------------------------------~~~~~~~-----------------  262 (457)
                      +|+++ .|+.|++||+.. +.....                               ++.....                 
T Consensus       338 ~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~  416 (611)
T 1nr0_A          338 TLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG  416 (611)
T ss_dssp             EEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred             EEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence            99999 999999999873 322211                               1100000                 


Q ss_pred             ---------------------------ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccccc
Q 012721          263 ---------------------------MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE  315 (457)
Q Consensus       263 ---------------------------~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~  315 (457)
                                                 ...|...+.+++|+|+| ++|++|+.|++|++||+.++....     ..    
T Consensus       417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg-~~lasgs~D~~v~lwd~~~~~~~~-----~~----  486 (611)
T 1nr0_A          417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSE-----VK----  486 (611)
T ss_dssp             EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEE-----EE----
T ss_pred             EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC-CEEEEeCCCCeEEEEEccCCceee-----ee----
Confidence                                       00134567899999999 999999999999999998753210     00    


Q ss_pred             ccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeE--eeeccccccccccccCCCCccccceEEE
Q 012721          316 SHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSV  392 (457)
Q Consensus       316 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~  392 (457)
                             ..+|...|++++|+|+|++|++++. ++|++||+...++++..  +..|...+               .+++|
T Consensus       487 -------~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V---------------~~v~f  544 (611)
T 1nr0_A          487 -------TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV---------------ACVSW  544 (611)
T ss_dssp             -------EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE---------------EEEEE
T ss_pred             -------ccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccce---------------eEEEE
Confidence                   1356789999999999999999875 99999999753444332  23366654               79999


Q ss_pred             cCCCcEEEEEeCCCcEEEEecCCCCcee-eEEecC-CCcceeeeeccCCcceec
Q 012721          393 SGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVEAG-KNENRKPILQAAPRARRS  444 (457)
Q Consensus       393 s~d~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~~-~~~v~~~~~~p~~~~~~~  444 (457)
                      +||+++|++|+.|++|++|++.+++... ..+.+| ...|.+++|+|++. .++
T Consensus       545 spdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s  597 (611)
T 1nr0_A          545 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVS  597 (611)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEE
T ss_pred             CCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEE
Confidence            9999999999999999999999875444 677899 89999999999998 444

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.9e-41  Score=307.86  Aligned_cols=285  Identities=12%  Similarity=0.104  Sum_probs=219.8

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|...|.+++|+|||++|++++ |+++++||.......                           ....++... ....
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~---------------------------~~~~~~~~~-~~~~   77 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK---------------------------DPCAAPNEG-FCSA   77 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES---------------------------SGGGTTCGG-GCSE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec---------------------------cccccCCcc-eeee
Confidence            45778899999999999999887 678888874321100                           000000000 0011


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                      ...++..|.+++|  ++++ .|++++.||+|++||+.+++........                                
T Consensus        78 ~~~~~~~v~~~~~--s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~--------------------------------  122 (344)
T 4gqb_B           78 GVQTEAGVADLTW--VGER-GILVASDSGAVELWELDENETLIVSKFC--------------------------------  122 (344)
T ss_dssp             EEEESSCEEEEEE--ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEE--------------------------------
T ss_pred             eeccCCCEEEEEE--eCCC-eEEEEECCCEEEEEeccCCCceeEeecc--------------------------------
Confidence            2223378999999  5664 7899999999999999988654432211                                


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                               ..+|...|++++|+|++++|++| .|+.|++||++ .++.+..       +.+|.
T Consensus       123 -------------------------~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~-------~~~h~  169 (344)
T 4gqb_B          123 -------------------------KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSS-------YRAHA  169 (344)
T ss_dssp             -------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCS
T ss_pred             -------------------------ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------EcCcC
Confidence                                     15899999999999999999999 99999999999 5666654       68899


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEe
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~  346 (457)
                      ..|.+++|+|++..+|++++.|++|++||+++++..    ..+..           ..|...+.+++|+|+ +++|++|+
T Consensus       170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~-----------~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGC-----------SAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC---------------CCCEEEEEECSSCTTEEEEEE
T ss_pred             CceEEEEecCCCCCceeeecccccccccccccccee----eeeec-----------ceeeccceeeeecCCCCcceEEec
Confidence            999999999998668999999999999999987643    22221           223457899999995 56788887


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      . +.|++||+++ ++++..+.+|...+               ++++|+|++ ++|++|+.|++|+|||+.++  ....+.
T Consensus       235 ~dg~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~fsp~g~~~lasgs~D~~i~vwd~~~~--~~~~~~  296 (344)
T 4gqb_B          235 ENGTVSLVDTKS-TSCVLSSAVHSQCV---------------TGLVFSPHSVPFLASLSEDCSLAVLDSSLS--ELFRSQ  296 (344)
T ss_dssp             TTSEEEEEESCC---CCEEEECCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTCC--EEEEEC
T ss_pred             cCCcEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEccCCCeEEEEEeCCCeEEEEECCCC--cEEEEc
Confidence            5 9999999986 88899999998865               699999998 58999999999999999988  356689


Q ss_pred             cCCCcceeeeeccCCccee
Q 012721          425 AGKNENRKPILQAAPRARR  443 (457)
Q Consensus       425 ~~~~~v~~~~~~p~~~~~~  443 (457)
                      +|.+.|++++|+|+++...
T Consensus       297 ~H~~~V~~v~~sp~~~~ll  315 (344)
T 4gqb_B          297 AHRDFVRDATWSPLNHSLL  315 (344)
T ss_dssp             CCSSCEEEEEECSSSTTEE
T ss_pred             CCCCCEEEEEEeCCCCeEE
Confidence            9999999999999997654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2e-40  Score=328.85  Aligned_cols=352  Identities=13%  Similarity=0.150  Sum_probs=252.8

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..+|.+.|++++|+|+|++||+|+.||+|+|||+.+++..                         ....+.+|.      
T Consensus        55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-------------------------~~~~~~~~~------  103 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-------------------------LKTTIPVFS------  103 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-------------------------EEEEEECSS------
T ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-------------------------eeEeecccC------
Confidence            3469999999999999999999999999999998755431                         445678888      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCC----CeEEEEEecccceeEEEeecCCCceeeeeecccccc-ccccCCCCCc
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN-FMNEHNPPSF  182 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  182 (457)
                            ++|.+++|  +|++++|++++.+    +.|++||.  +.....+. .....|.+++|++.... ++...     
T Consensus       104 ------~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~-gh~~~v~~v~f~p~~~~~l~s~s-----  167 (611)
T 1nr0_A          104 ------GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLT-GQARAMNSVDFKPSRPFRIISGS-----  167 (611)
T ss_dssp             ------SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCC-CCSSCEEEEEECSSSSCEEEEEE-----
T ss_pred             ------CceEEEEE--CCCCCEEEEEECCCCceeEEEEeeC--CCCcceec-CCCCCceEEEECCCCCeEEEEEe-----
Confidence                  88999999  7899999998865    47888874  33322222 23345788888765443 22222     


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                               .++.+++||...   .++...+ .+|...|.+++|+|++++|+++ .|++|++||+. .++....+.....
T Consensus       168 ---------~D~~v~lwd~~~---~~~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~-~g~~~~~~~~~~~  233 (611)
T 1nr0_A          168 ---------DDNTVAIFEGPP---FKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV-DGTKTGVFEDDSL  233 (611)
T ss_dssp             ---------TTSCEEEEETTT---BEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEECBCTTS
T ss_pred             ---------CCCeEEEEECCC---CeEeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECC-CCcEeeeeccccc
Confidence                     256899999753   3455555 8999999999999999999999 99999999998 5555554311111


Q ss_pred             cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc----------------------------cccccc
Q 012721          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA----------------------------RILRDA  313 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~----------------------------~~~~~~  313 (457)
                      ...+|...|.+++|+|++ .+|++++.|++|++||+++++......                            +++.. 
T Consensus       234 ~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~-  311 (611)
T 1nr0_A          234 KNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP-  311 (611)
T ss_dssp             SSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET-
T ss_pred             cccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeC-
Confidence            123799999999999999 999999999999999999876431100                            00000 


Q ss_pred             ccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEe-eeccccccccc---------------
Q 012721          314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLC---------------  376 (457)
Q Consensus       314 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~---------------  376 (457)
                       ........+.+|...|++++|+|+|++|++++. +.|++||+.+ ++....+ .+|...+..+.               
T Consensus       312 -~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~  389 (611)
T 1nr0_A          312 -ELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH  389 (611)
T ss_dssp             -TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTE
T ss_pred             -CCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCc
Confidence             000112345689999999999999999999875 9999999975 3332221 11211110000               


Q ss_pred             ----c-----------------------ccCCC------------------------CccccceEEEcCCCcEEEEEeCC
Q 012721          377 ----D-----------------------LYNND------------------------SIFDKFECSVSGDGLHFATGSYS  405 (457)
Q Consensus       377 ----~-----------------------~~~~~------------------------~~~~v~~~~~s~d~~~l~s~~~d  405 (457)
                          +                       .+.++                        .-..+.+++|+|||++|++|+.|
T Consensus       390 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D  469 (611)
T 1nr0_A          390 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD  469 (611)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             eEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCC
Confidence                0                       00000                        01234689999999999999999


Q ss_pred             CcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       406 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ++|++||+.++........+|...|.+++|+|++...++
T Consensus       470 ~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las  508 (611)
T 1nr0_A          470 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA  508 (611)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEE
Confidence            999999998763222233789999999999999988776

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5e-40  Score=303.77  Aligned_cols=279  Identities=15%  Similarity=0.184  Sum_probs=230.2

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|++++||+|+.||+|+|||..+++                           ....+..|.       
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~---------------------------~~~~~~~~~-------  106 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN---------------------------KEHAVTMPC-------  106 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------------------------EEEEEECSS-------
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---------------------------cceEEecCC-------
Confidence            3599999999999999999999999999999987665                           334566676       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++|  +|++.+|++++.|+.+++|++.......                                     
T Consensus       107 -----~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~-------------------------------------  142 (354)
T 2pbi_B          107 -----TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNEN-------------------------------------  142 (354)
T ss_dssp             -----SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCC-------------------------------------
T ss_pred             -----CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEecccccc-------------------------------------
Confidence                 77999999  7899999999999999999986532110                                     


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                       .......+ .+|...|.+++|+|++..|+++ .|++|++||++ .++....       +.+|.
T Consensus       143 -----------------~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~-~~~~~~~-------~~~h~  196 (354)
T 2pbi_B          143 -----------------MAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVE-SGQLLQS-------FHGHG  196 (354)
T ss_dssp             -----------------SGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEE-------EECCS
T ss_pred             -----------------ccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCeEEEE-------EcCCC
Confidence                             00111112 5799999999999999999999 99999999998 5655554       57899


Q ss_pred             CceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          268 EVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       268 ~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ..|.+++|+|+  + ++|++|+.||.|++||+++++..    ..             +.+|...|.+++|+|++.+|+++
T Consensus       197 ~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~~----~~-------------~~~h~~~v~~v~~~p~~~~l~s~  258 (354)
T 2pbi_B          197 ADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQCV----QA-------------FETHESDVNSVRYYPSGDAFASG  258 (354)
T ss_dssp             SCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCCEE----EE-------------ECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcEE----EE-------------ecCCCCCeEEEEEeCCCCEEEEE
Confidence            99999999884  5 79999999999999999987533    22             34577899999999999999998


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      +. +.|++||++. .+.+..+..+...             ..+.+++|+|++.+|++|+.|+.|++||+.++ .....+.
T Consensus       259 s~D~~v~lwd~~~-~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l~  323 (354)
T 2pbi_B          259 SDDATCRLYDLRA-DREVAIYSKESII-------------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSILF  323 (354)
T ss_dssp             ETTSCEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEEC
T ss_pred             eCCCeEEEEECCC-CcEEEEEcCCCcc-------------cceeEEEEeCCCCEEEEEECCCcEEEEECCCC-ceEEEEE
Confidence            75 9999999985 5555555433221             12368999999999999999999999999988 6778899


Q ss_pred             cCCCcceeeeeccCCcceec
Q 012721          425 AGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       425 ~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +|..+|.+++|+|++...++
T Consensus       324 ~h~~~v~~l~~spdg~~l~s  343 (354)
T 2pbi_B          324 GHENRVSTLRVSPDGTAFCS  343 (354)
T ss_dssp             CCSSCEEEEEECTTSSCEEE
T ss_pred             CCCCcEEEEEECCCCCEEEE
Confidence            99999999999999988877

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.7e-40  Score=299.63  Aligned_cols=297  Identities=15%  Similarity=0.174  Sum_probs=231.1

Q ss_pred             cccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..|.+.|++++|+|++ ++|++|+.|++|++|++.+....                      ....+..+.+|.      
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~------   65 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHS------   65 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCS------
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCc------
Confidence            3599999999999965 89999999999999998754321                      123567789999      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ..|.+++|  ++++.+|++++.|++|++||+.+++....+.. ....|.+++|.+....++...          
T Consensus        66 ------~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s----------  126 (319)
T 3frx_A           66 ------HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGS----------  126 (319)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSCEEEEEE----------
T ss_pred             ------ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc-CCCcEEEEEEcCCCCEEEEEe----------
Confidence                  88999999  78999999999999999999999887655543 334577888775443333322          


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC------CCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD------CETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                          .++.+++||++.    +++..+ .+|...|.+++++|.      +..++++ .|+.|++||++ ..+....     
T Consensus       127 ----~D~~i~vwd~~~----~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~-----  191 (319)
T 3frx_A          127 ----RDKTIKVWTIKG----QCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QFQIEAD-----  191 (319)
T ss_dssp             ----TTSCEEEEETTS----CEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT-TTEEEEE-----
T ss_pred             ----CCCeEEEEECCC----CeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC-cchhhee-----
Confidence                266899999863    455555 789999999999985      4478888 99999999998 4444433     


Q ss_pred             CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                        +.+|...|.+++|+|++ .+|++++.||.|++||+++++..    ..+..              ...|.+++|+|++.
T Consensus       192 --~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~  250 (319)
T 3frx_A          192 --FIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAM----YTLSA--------------QDEVFSLAFSPNRY  250 (319)
T ss_dssp             --ECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------CSCEEEEEECSSSS
T ss_pred             --ecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecC--------------CCcEEEEEEcCCCC
Confidence              57899999999999999 99999999999999999987643    22222              35799999999999


Q ss_pred             eEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          341 HLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       341 ~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      +|++++++.+++|+++. ...+..+..+......       .....+.+++|+|||++|++|+.||.|+|||+.++
T Consensus       251 ~la~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~~-------~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          251 WLAAATATGIKVFSLDP-QYLVDDLRPEFAGYSK-------AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEEETTEEEEEEETT-EEEEEEECCCCTTCCG-------GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEEEEcCCCcEEEEeCc-CeeeeccCcccccccc-------CcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            99999888899999974 4445444332111000       00011268999999999999999999999999765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-39  Score=295.55  Aligned_cols=275  Identities=20%  Similarity=0.350  Sum_probs=232.5

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|++++||+|+.||.|+||+..+++                           ....+.+|.       
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------~~~~~~~h~-------   65 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------------FEKTISGHK-------   65 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS-------
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---------------------------cchhhccCC-------
Confidence            3499999999999999999999999999999987665                           446678888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++|  ++++++|++++.|+.|++||+.+++....+                                   
T Consensus        66 -----~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-----------------------------------  103 (312)
T 4ery_A           66 -----LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLKTL-----------------------------------  103 (312)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------
T ss_pred             -----CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEEEEE-----------------------------------
Confidence                 88999999  789999999999999999999887654331                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                .+|...|.+++|+|++++|++| .|+.|++||++ .++....       +..|.
T Consensus       104 --------------------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-------~~~~~  149 (312)
T 4ery_A          104 --------------------------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKT-------LPAHS  149 (312)
T ss_dssp             --------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCS
T ss_pred             --------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCEEEEE-------ecCCC
Confidence                                      5788899999999999999999 99999999998 5555544       56788


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      ..|.+++|+|++ .+|++++.||.|++||+++++..    ..+.            ..+...+..++|+|++++|++++.
T Consensus       150 ~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
T 4ery_A          150 DPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLI------------DDDNPPVSFVKFSPNGKYILAATL  212 (312)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEEC------------CSSCCCEEEEEECTTSSEEEEEET
T ss_pred             CcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEe------------ccCCCceEEEEECCCCCEEEEEcC
Confidence            999999999999 99999999999999999987543    1111            123467999999999999999875


Q ss_pred             -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE-cCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                       +.|++||++. ++.+..+.+|......             ....+ .+++.+|++|+.||.|++||+.++ .....+.+
T Consensus       213 d~~i~iwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~  277 (312)
T 4ery_A          213 DNTLKLWDYSK-GKCLKTYTGHKNEKYC-------------IFANFSVTGGKWIVSGSEDNLVYIWNLQTK-EIVQKLQG  277 (312)
T ss_dssp             TTEEEEEETTT-TEEEEEECSSCCSSSC-------------CCEEEECSSSCEEEECCTTSCEEEEETTTC-CEEEEECC
T ss_pred             CCeEEEEECCC-CcEEEEEEecCCceEE-------------EEEEEEeCCCcEEEEECCCCEEEEEECCCc-hhhhhhhc
Confidence             9999999986 7788888877654321             12344 467899999999999999999998 77889999


Q ss_pred             CCCcceeeeeccCCcceecc
Q 012721          426 GKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       426 ~~~~v~~~~~~p~~~~~~~~  445 (457)
                      |...+.+++|+|+++..+++
T Consensus       278 h~~~v~~~~~~p~~~~l~s~  297 (312)
T 4ery_A          278 HTDVVISTACHPTENIIASA  297 (312)
T ss_dssp             CSSCEEEEEECSSSSEEEEE
T ss_pred             cCCcEEEEeecCcCCceEEE
Confidence            99999999999999988763

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.3e-40  Score=302.23  Aligned_cols=311  Identities=15%  Similarity=0.154  Sum_probs=229.4

Q ss_pred             ccCC-ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        30 ~h~~-~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .|.+ .|++++|+|+|++||+|+.|++|+||++.++...                        .......+|.       
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~------------------------~~~~~~~~h~-------   61 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI------------------------CKSVLSEGHQ-------   61 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE------------------------EEEEECSSCS-------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce------------------------eeeeeccccC-------
Confidence            4777 9999999999999999999999999999876421                        0112236787       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeec-CCCceeeeeeccccccccccCCCCCceeccC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                           ..|.+++|  +|++++|++++.|++|++|++..+.......+. ....|.+++|++....++...          
T Consensus        62 -----~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s----------  124 (345)
T 3fm0_A           62 -----RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS----------  124 (345)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE----------
T ss_pred             -----CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE----------
Confidence                 88999999  789999999999999999999887654444443 345688888876433333222          


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                          .++.+++||+.......++..+ .+|...|.+++|+|++++|+++ .|+.|++||.+ .+.....     ..+.+|
T Consensus       125 ----~D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~-~~~~~~~-----~~~~~h  193 (345)
T 3fm0_A          125 ----RDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE-EDDWVCC-----ATLEGH  193 (345)
T ss_dssp             ----TTSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE-TTEEEEE-----EEECCC
T ss_pred             ----CCCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec-CCCEEEE-----EEecCC
Confidence                2568999999876655666666 8899999999999999999999 99999999998 3332211     126789


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec-cccceEEEEEccCCCeEEEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ...|.+++|+|++ ++|++++.|++|++||.......... ..... .........+.+ |...|.+++|+|++.+|+++
T Consensus       194 ~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~  270 (345)
T 3fm0_A          194 ESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGV-ACSGS-DPSWKCICTLSGFHSRTIYDIAWCQLTGALATA  270 (345)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCC-CCC----CEEEEEEEECSSCSSCEEEEEECTTTCCEEEE
T ss_pred             CCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccc-eeecc-CCccceeEEecCCCCCcEEEEEEecCCCEEEEE
Confidence            9999999999999 99999999999999997543211000 00000 000000111222 77899999999999999988


Q ss_pred             ec-CcEEEEeccCCC---CceeE-----eeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCC
Q 012721          346 DY-MNLKLWDIRMDS---TPVAT-----FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~  415 (457)
                      +. +.|++|+.....   .+...     ..+|...+               .+++|+|++ .+||+|+.||+|++|++.+
T Consensus       271 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V---------------~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          271 CGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV---------------NCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             ETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             eCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE---------------eEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence            64 999999986422   11111     23455443               799999997 5999999999999999998


Q ss_pred             CC
Q 012721          416 GS  417 (457)
Q Consensus       416 ~~  417 (457)
                      ++
T Consensus       336 ~~  337 (345)
T 3fm0_A          336 PE  337 (345)
T ss_dssp             --
T ss_pred             CC
Confidence            74

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-40  Score=310.45  Aligned_cols=300  Identities=18%  Similarity=0.292  Sum_probs=226.7

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|++++||+|+.||+|+|||+.+++                           ....+.+|.       
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~---------------------------~~~~~~~h~-------  108 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ---------------------------KTHAIKLHC-------  108 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---------------------------EEEEEECCC-------
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------cceEEecCC-------
Confidence            4599999999999999999999999999999988765                           446778888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccccee-----EEE-eecCCCceeeeeeccccccccccCCCCCc
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-----KIK-EMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                           ..|.+++|  +|++++|++++.|+.+++|++......     ... -......+.++.|.+..+..+.+.     
T Consensus       109 -----~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~-----  176 (380)
T 3iz6_a          109 -----PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG-----  176 (380)
T ss_dssp             -----TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE-----
T ss_pred             -----CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE-----
Confidence                 78999999  789999999999999999998753211     000 011122233444443322211111     


Q ss_pred             eeccCCccccccceEEEeccCccccccce-eeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQK-VYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  259 (457)
                              ..++.+++||+.......... .+..+|...|.+++|++ ++.+|++| .|+.|++||++........    
T Consensus       177 --------s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~----  244 (380)
T 3iz6_a          177 --------SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT----  244 (380)
T ss_dssp             --------CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE----
T ss_pred             --------CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE----
Confidence                    135689999997643322211 12257999999999977 88999999 9999999999855555544    


Q ss_pred             CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g  339 (457)
                         +.+|...|.+++|+|++ .+|++|+.||+|++||+++++..    ..+..+..      ....+...|++++|+|+|
T Consensus       245 ---~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~----~~~~~~~~------~~~~~~~~v~~~~~s~~g  310 (380)
T 3iz6_a          245 ---YHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQL----QVYNREPD------RNDNELPIVTSVAFSISG  310 (380)
T ss_dssp             ---ECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEE----EEECCCCS------SSCCSSCSCSEEEECSSS
T ss_pred             ---ECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEE----EEeccccc------ccccccCceEEEEECCCC
Confidence               67899999999999999 99999999999999999998654    23322110      011223468999999999


Q ss_pred             CeEEEEec-CcEEEEeccCCCCceeEe----eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          340 QHLLSRDY-MNLKLWDIRMDSTPVATF----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       340 ~~l~s~~~-~~i~~wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      ++|++|+. |.|++||+.. ++.+..+    .+|...+               .+++|+||+.+|++|+.|++|++|++.
T Consensus       311 ~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v---------------~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          311 RLLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGRI---------------SCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             SEEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCCC---------------CEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             CEEEEEECCCCEEEEECCC-CceEEEEecccCCCCCce---------------EEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            99999975 9999999975 6666555    4566654               699999999999999999999999998


Q ss_pred             CC
Q 012721          415 VG  416 (457)
Q Consensus       415 ~~  416 (457)
                      ..
T Consensus       375 ~~  376 (380)
T 3iz6_a          375 GH  376 (380)
T ss_dssp             SS
T ss_pred             CC
Confidence            66

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.9e-38  Score=291.85  Aligned_cols=302  Identities=16%  Similarity=0.171  Sum_probs=224.1

Q ss_pred             ccccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ..+|.+.|++|+|+|+ +++||||+.||+|+|||+.+.+..                      ...+...+.+|.     
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------------~~~~~~~l~~h~-----   86 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------------YGIPQRALRGHS-----   86 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------------SEEEEEEECCCS-----
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------------cceeeEEEeCCC-----
Confidence            3459999999999997 689999999999999999876542                      233566788998     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ..|.+++|  ++++.+|++++.|+.|++|+.............. ..+....+.+....++..          
T Consensus        87 -------~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~----------  146 (340)
T 4aow_A           87 -------HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT-KDVLSVAFSSDNRQIVSG----------  146 (340)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEECTTSSCEEEE----------
T ss_pred             -------CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCCC-CceeEEEEeecCccceee----------
Confidence                   88999999  7899999999999999999998876655443322 222333333222222211          


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                          ..++.+++|+......   ......+|...+.+++|++++  .+++++ .|+.|++||++ ..+....       +
T Consensus       147 ----s~d~~~~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~-------~  211 (340)
T 4aow_A          147 ----SRDKTIKLWNTLGVCK---YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCKLKTN-------H  211 (340)
T ss_dssp             ----ETTSCEEEECTTSCEE---EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TTEEEEE-------E
T ss_pred             ----cCCCeEEEEEeCCCce---EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC-CCceeeE-------e
Confidence                1256799998864322   222236899999999998754  567778 99999999998 5555544       5


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      .+|...|++++|+|++ ++|++|+.||.|++||+++.+..    ..+..              ...|.+++|+|++.+++
T Consensus       212 ~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~~~~~~~~~  272 (340)
T 4aow_A          212 IGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL----YTLDG--------------GDIINALCFSPNRYWLC  272 (340)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSSSSEEE
T ss_pred             cCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee----eeecC--------------CceEEeeecCCCCceee
Confidence            7899999999999999 99999999999999999987543    22222              35799999999998888


Q ss_pred             EEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721          344 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       344 s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                      ++.++.|++||++. ...+..+..+.....      .......|++++|+||+++|++|+.||.|+|||+.+|.
T Consensus       273 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          273 AATGPSIKIWDLEG-KIIVDELKQEVISTS------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEETTEEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ccCCCEEEEEECCC-CeEEEeccccceeee------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            88889999999975 555554432211100      00011123799999999999999999999999999983

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.7e-38  Score=313.73  Aligned_cols=306  Identities=20%  Similarity=0.290  Sum_probs=250.0

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|...|.+++|+|++++|++++.|+.|++|+....                            .+..+.+|.       
T Consensus       259 ~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~----------------------------~~~~~~~h~-------  303 (577)
T 2ymu_A          259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLTGHS-------  303 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------------EEEEECCCS-------
T ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc----------------------------EEEEEecCC-------
Confidence            348899999999999999999999999999996432                            445678888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++|  +|++.+|++++.|+.|++|+..........  .....+.+++|.+....++..            
T Consensus       304 -----~~v~~~~~--~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~------------  362 (577)
T 2ymu_A          304 -----SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQHLQTLT--GHSSSVWGVAFSPDGQTIASA------------  362 (577)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEEC--CCSSCEEEEEECTTSSEEEEE------------
T ss_pred             -----CCeEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCeeEEEe--CCCCCEEEEEECCCCCEEEEE------------
Confidence                 88999999  789999999999999999998765543321  233456666665432222211            


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                        ..++.+++|+..    .+.+..+ .+|...|.+++|+|++++|+++ .|+.|++||..  ++....       +.+|.
T Consensus       363 --~~dg~v~~~~~~----~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~~~~-------~~~~~  426 (577)
T 2ymu_A          363 --SDDKTVKLWNRN----GQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-------LTGHS  426 (577)
T ss_dssp             --ETTSEEEEEETT----CCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCEEEE-------EECCS
T ss_pred             --eCCCEEEEEcCC----CCEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEE-------ecCCC
Confidence              125579999964    3444555 7899999999999999999999 99999999965  444443       57899


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      ..|++++|+|++ ++|++++.|+.|++||.... ..    .             .+.+|...|.+++|+|++++|+++++
T Consensus       427 ~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~~-~~----~-------------~~~~~~~~v~~~~~spd~~~las~~~  487 (577)
T 2ymu_A          427 SSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQ-LL----Q-------------TLTGHSSSVRGVAFSPDGQTIASASD  487 (577)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSEEEEEETTSC-EE----E-------------EEECCSSCEEEEEECTTSCEEEEEET
T ss_pred             CCeEEEEECCCC-CEEEEEcCCCEEEEEECCCC-EE----E-------------EEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            999999999999 99999999999999997542 11    1             13557789999999999999999875


Q ss_pred             -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                       +.|++||..  ++.+..+.+|...+               ++++|+||+++|++++.||.|++||. ++ +....+.+|
T Consensus       488 d~~i~iw~~~--~~~~~~~~~h~~~v---------------~~l~~s~dg~~l~s~~~dg~v~lwd~-~~-~~~~~~~~h  548 (577)
T 2ymu_A          488 DKTVKLWNRN--GQLLQTLTGHSSSV---------------RGVAFSPDGQTIASASDDKTVKLWNR-NG-QLLQTLTGH  548 (577)
T ss_dssp             TSEEEEEETT--SCEEEEEECCSSCE---------------EEEEECTTSSCEEEEETTSEEEEECT-TS-CEEEEEECC
T ss_pred             CCEEEEEcCC--CCEEEEEeCCCCCE---------------EEEEEcCCCCEEEEEECcCEEEEEeC-CC-CEEEEEcCC
Confidence             999999964  78888999998765               69999999999999999999999996 45 678889999


Q ss_pred             CCcceeeeeccCCcceec
Q 012721          427 KNENRKPILQAAPRARRS  444 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~  444 (457)
                      .++|.+++|+||+....+
T Consensus       549 ~~~v~~~~fs~dg~~l~s  566 (577)
T 2ymu_A          549 SSSVWGVAFSPDGQTIAS  566 (577)
T ss_dssp             SSCEEEEEECTTSSCEEE
T ss_pred             CCCEEEEEEcCCCCEEEE
Confidence            999999999999988776

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-38  Score=292.93  Aligned_cols=304  Identities=15%  Similarity=0.134  Sum_probs=224.3

Q ss_pred             ccCCceEEEEE-----CC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcc
Q 012721           30 QDVDIVSAIEF-----DK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (457)
Q Consensus        30 ~h~~~V~~~~~-----s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (457)
                      .|.+.|++++|     ++ ++++||+|+.|++|+||++...+..                    .........+.+|.  
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~--------------------~~~~~~~~~l~~h~--   76 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN--------------------GYFGIPHKALTGHN--   76 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS--------------------SBSEEEEEEECCCS--
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc--------------------cccccccchhccCC--
Confidence            49999999999     77 8999999999999999999765421                    00123456788998  


Q ss_pred             ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       104 ~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                                ..|.+++|  ++++.++++++.|++|++||+.+++....+.. ....|.+++|++....++...      
T Consensus        77 ----------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~------  137 (343)
T 2xzm_R           77 ----------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPDNRQILSAG------  137 (343)
T ss_dssp             ----------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEEEEEEC-CCSCEEEEEECSSTTEEEEEE------
T ss_pred             ----------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC-CCCcEEEEEECCCCCEEEEEc------
Confidence                      88999999  78999999999999999999999877655543 344588888876544333332      


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC----------CEEEEe-CCCeEEEEEcCCCcce
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC----------ETFVSA-DDLRINLWNLEISDQC  252 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~l~~~-~d~~i~iwd~~~~~~~  252 (457)
                              .++.+++||+....... .. ...+|...|.+++|+|++          .+|+++ .|+.|++||..  ...
T Consensus       138 --------~d~~i~~wd~~~~~~~~-~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~  205 (343)
T 2xzm_R          138 --------AEREIKLWNILGECKFS-SA-EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQI  205 (343)
T ss_dssp             --------TTSCEEEEESSSCEEEE-CC-TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEE
T ss_pred             --------CCCEEEEEeccCCceee-ee-cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--Cce
Confidence                    26689999986321111 11 113788999999999987          689998 99999999954  333


Q ss_pred             eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (457)
Q Consensus       253 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  332 (457)
                      ...       +.+|...|.+++|+|++ ++|++|+.||.|++||++.....   ...+              .+...|.+
T Consensus       206 ~~~-------~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~--------------~~~~~v~~  260 (343)
T 2xzm_R          206 RYT-------FKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREF--------------DAGSTINQ  260 (343)
T ss_dssp             EEE-------EECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEE--------------ECSSCEEE
T ss_pred             eEE-------EcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceee--------------cCCCcEEE
Confidence            332       57899999999999999 99999999999999999543211   0111              12356999


Q ss_pred             EEEccCCCeEEEEecCcEEEEeccCCCCcee--EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721          333 IKFANDGQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  410 (457)
Q Consensus       333 ~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i  410 (457)
                      ++|+|+++++++++++.|++||+.+ .+...  .+..+...  ......  .....+.+++|+|++++|++|+.||.|++
T Consensus       261 v~~sp~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~~~--~~~~~~--~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~  335 (343)
T 2xzm_R          261 IAFNPKLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEPIT--KAEGQK--GKNPQCTSLAWNALGKKLFAGFTDGVIRT  335 (343)
T ss_dssp             EEECSSSCEEEEEESSCEEEEESSS-CCSCSEEECCCCSGG--GBTTBC--CSCCCEEEEEECSSSCCEEEEETTSEEEE
T ss_pred             EEECCCCCEEEEECCCCEEEEEeCC-CCCCceEEeecCcch--hhhhhc--CCCCceEEEEECCCCCeEEEecCCceEEE
Confidence            9999999999988889999999975 34332  33211000  000000  00012368999999999999999999999


Q ss_pred             EecCCC
Q 012721          411 FSHGVG  416 (457)
Q Consensus       411 w~~~~~  416 (457)
                      |++.++
T Consensus       336 w~~~~g  341 (343)
T 2xzm_R          336 FSFETS  341 (343)
T ss_dssp             EEEEEE
T ss_pred             EEEEcc
Confidence            999876

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-38  Score=298.27  Aligned_cols=283  Identities=19%  Similarity=0.345  Sum_probs=218.0

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcc-----
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE-----  103 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----  103 (457)
                      +.|.+.|.|++|+|||++||+|+ ++.++||++.+++.                           +..+.+|...     
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~---------------------------~~~l~~~~~~~~~~~  112 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL---------------------------VARLSDDSAANKDPE  112 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE---------------------------EEEECC---------
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE---------------------------EEEecCccccccccc
Confidence            35999999999999999999987 67899999987763                           2223332210     


Q ss_pred             -ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          104 -FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       104 -~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                       +...........|.+++|  ++++++|++++.|+.|++||+.+++....+                             
T Consensus       113 ~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~-----------------------------  161 (393)
T 1erj_A          113 NLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMIL-----------------------------  161 (393)
T ss_dssp             --------CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------
T ss_pred             cccccccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEEE-----------------------------
Confidence             000000111245999999  789999999999999999999887654321                             


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                                                      .+|...|.+++|+|++++|+++ .|+.|++||++ .++....+     
T Consensus       162 --------------------------------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~-~~~~~~~~-----  203 (393)
T 1erj_A          162 --------------------------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTL-----  203 (393)
T ss_dssp             --------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE-----
T ss_pred             --------------------------------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC-CCeeEEEE-----
Confidence                                            6899999999999999999999 99999999998 55554432     


Q ss_pred             cccCCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          262 NMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                         .+...+.+++|+| ++ .+|++|+.||.|++||+++++..    ..+..      ......+|...|.+++|+|+|+
T Consensus       204 ---~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~------~~~~~~~h~~~v~~v~~~~~g~  269 (393)
T 1erj_A          204 ---SIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDS------ENESGTGHKDSVYSVVFTRDGQ  269 (393)
T ss_dssp             ---ECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC------------CCCSSCEEEEEECTTSS
T ss_pred             ---EcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeecc------cccCCCCCCCCEEEEEECCCCC
Confidence               2456799999999 66 99999999999999999987543    11111      0112356888999999999999


Q ss_pred             eEEEEec-CcEEEEeccCC-----------CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721          341 HLLSRDY-MNLKLWDIRMD-----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  408 (457)
Q Consensus       341 ~l~s~~~-~~i~~wd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i  408 (457)
                      +|++++. +.|++||++..           +.+...+.+|...+               ++++|+|++.+|++|+.|+.|
T Consensus       270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~sgs~D~~v  334 (393)
T 1erj_A          270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------------LSVATTQNDEYILSGSKDRGV  334 (393)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCE---------------EEEEECGGGCEEEEEETTSEE
T ss_pred             EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcE---------------EEEEECCCCCEEEEEeCCCeE
Confidence            9999874 99999999642           12344556666654               689999999999999999999


Q ss_pred             EEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721          409 RIFSHGVGSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       409 ~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                      ++||+.++ .....+.+|...|.+++|+|.
T Consensus       335 ~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~  363 (393)
T 1erj_A          335 LFWDKKSG-NPLLMLQGHRNSVISVAVANG  363 (393)
T ss_dssp             EEEETTTC-CEEEEEECCSSCEEEEEECSS
T ss_pred             EEEECCCC-eEEEEECCCCCCEEEEEecCC
Confidence            99999998 678889999999999999873

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=291.36  Aligned_cols=249  Identities=18%  Similarity=0.222  Sum_probs=199.5

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .+|...|.+++|+|++ .|++|+.||+|+|||+.+++..                       ......+.+|.       
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~H~-------  127 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL-----------------------IVSKFCKYEHD-------  127 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC-----------------------EEEEEEEECCS-------
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce-----------------------eEeeccccCCC-------
Confidence            3467889999999985 6789999999999999987642                       11223456888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           +.|++++|  ++++++|++++.|++|++||+.+++....+                                   
T Consensus       128 -----~~V~~v~~--spdg~~l~sgs~d~~i~iwd~~~~~~~~~~-----------------------------------  165 (344)
T 4gqb_B          128 -----DIVSTVSV--LSSGTQAVSGSKDICIKVWDLAQQVVLSSY-----------------------------------  165 (344)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------------
T ss_pred             -----CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence                 88999999  789999999999999999999987654431                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                .+|...|.+++|+|++. +|+++ .|+.|++||++ .++....+     ....+
T Consensus       166 --------------------------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~-----~~~~~  213 (344)
T 4gqb_B          166 --------------------------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR-CPKPASQI-----GCSAP  213 (344)
T ss_dssp             --------------------------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT-SSSCEEEC-----C----
T ss_pred             --------------------------cCcCCceEEEEecCCCCCceeeecccccccccccc-ccceeeee-----eccee
Confidence                                      68999999999999875 67888 99999999998 45544432     13456


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR  345 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~  345 (457)
                      ...+.+++|+|++.++|++|+.||+|++||+++++..    ..             +.+|...|++++|+|++ ++|++|
T Consensus       214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~-------------~~~h~~~v~~v~fsp~g~~~lasg  276 (344)
T 4gqb_B          214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LS-------------SAVHSQCVTGLVFSPHSVPFLASL  276 (344)
T ss_dssp             CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EE-------------EECCSSCEEEEEECSSSSCCEEEE
T ss_pred             eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EE-------------EcCCCCCEEEEEEccCCCeEEEEE
Confidence            6779999999976589999999999999999987532    22             45678899999999998 578888


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEEecCCC
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw~~~~~  416 (457)
                      +. ++|++||+++ ++ +..+.+|...+               ++++|+|++. +|++++.|++|++|++.+.
T Consensus       277 s~D~~i~vwd~~~-~~-~~~~~~H~~~V---------------~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          277 SEDCSLAVLDSSL-SE-LFRSQAHRDFV---------------RDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             ETTSCEEEECTTC-CE-EEEECCCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             eCCCeEEEEECCC-Cc-EEEEcCCCCCE---------------EEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            74 9999999975 44 45677888765               7999999986 6779999999999999876

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6e-38  Score=309.81  Aligned_cols=321  Identities=19%  Similarity=0.272  Sum_probs=251.6

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ...|++.|+|++|||||++||+|+.|++|+|||.. ++                           .+..+.+|.      
T Consensus        12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~~---------------------------~~~~l~gh~------   57 (577)
T 2ymu_A           12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ---------------------------LLQTLTGHS------   57 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC---------------------------EEEEEECCS------
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-CC---------------------------EEEEEeCCC------
Confidence            34599999999999999999999999999999953 32                           456889999      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCC-------
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-------  180 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  180 (457)
                            +.|.+++|  +|++++|++++.|++|++||.. ++....+.. ....|.+++|++....++......       
T Consensus        58 ------~~V~~l~f--spdg~~las~~~d~~i~vWd~~-~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~  127 (577)
T 2ymu_A           58 ------SSVWGVAF--SPDGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNR  127 (577)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSCEEEEETT-SCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ------CCEEEEEE--CCCCCEEEEEeCCCEEEEEECC-CCEEEEEEC-CCCCEEEEEECCCCCEEEEEcCCCceeeccc
Confidence                  88999999  7899999999999999999965 444443332 334577777776433222211100       


Q ss_pred             ---------------------------------------------------------CceeccCCcc----ccccceEEE
Q 012721          181 ---------------------------------------------------------SFAHGYHLEW----TENMATKIA  199 (457)
Q Consensus       181 ---------------------------------------------------------~~~~~~~~~~----~~~~~i~~~  199 (457)
                                                                               ...+.+++.+    ..++.+++|
T Consensus       128 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w  207 (577)
T 2ymu_A          128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW  207 (577)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             ccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEE
Confidence                                                                     0122223322    123478888


Q ss_pred             eccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC
Q 012721          200 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  278 (457)
Q Consensus       200 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~  278 (457)
                      +.+    .+.++.+ .+|...|.+++|+|++++|+++ .|+.|++||..  ++.+..       +.+|...|.+++|+|+
T Consensus       208 ~~~----~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~-------~~~~~~~v~~v~~~~d  273 (577)
T 2ymu_A          208 NRN----GQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-------LTGHSSSVNGVAFRPD  273 (577)
T ss_dssp             CTT----SCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT--SCEEEE-------ECCCSSCEEEEEECTT
T ss_pred             eCC----CcEEEEE-ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEE-------EecCCCCEEEEEEcCC
Confidence            854    2444444 7899999999999999999999 99999999976  444443       5789999999999999


Q ss_pred             CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccC
Q 012721          279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM  357 (457)
Q Consensus       279 ~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~  357 (457)
                      + ..|++++.|+.|++||..... .    ..             +.+|...|.+++|+|++++|+++++ +.|++||.. 
T Consensus       274 ~-~~l~~~~~d~~i~~w~~~~~~-~----~~-------------~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-  333 (577)
T 2ymu_A          274 G-QTIASASDDKTVKLWNRNGQL-L----QT-------------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-  333 (577)
T ss_dssp             S-SEEEEEETTSCEEEEETTSCE-E----EE-------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-
T ss_pred             C-CEEEEEeCCCEEEEEeCCCcE-E----EE-------------EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-
Confidence            9 999999999999999965421 1    11             3457789999999999999999875 999999985 


Q ss_pred             CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeecc
Q 012721          358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  437 (457)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p  437 (457)
                       +..+..+.+|...+               .+++|+|++++|++++.|+.|++|+.. + +....+.+|..++++++|+|
T Consensus       334 -~~~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~  395 (577)
T 2ymu_A          334 -GQHLQTLTGHSSSV---------------WGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSP  395 (577)
T ss_dssp             -SCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECT
T ss_pred             -CCeeEEEeCCCCCE---------------EEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECC
Confidence             56667777777654               689999999999999999999999964 4 57888999999999999999


Q ss_pred             CCcceec
Q 012721          438 APRARRS  444 (457)
Q Consensus       438 ~~~~~~~  444 (457)
                      ++...++
T Consensus       396 dg~~l~~  402 (577)
T 2ymu_A          396 DGQTIAS  402 (577)
T ss_dssp             TSSCEEE
T ss_pred             CCCEEEE
Confidence            9987766

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-38  Score=287.94  Aligned_cols=242  Identities=18%  Similarity=0.272  Sum_probs=210.6

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|...|.+++|++++.++++|+.|++|+|||+.+++                           .+..+..|.       
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~---------------------------~~~~~~~~~-------  122 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK---------------------------QIKSIDAGP-------  122 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCT-------
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC---------------------------EEEEEeCCC-------
Confidence            3599999999999999999999999999999998765                           345667776       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..+.+++|  +|++++|++++.|+.|++|++.+++.....                                   
T Consensus       123 -----~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~~~~~~-----------------------------------  160 (321)
T 3ow8_A          123 -----VDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYSL-----------------------------------  160 (321)
T ss_dssp             -----TCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCSEEEEE-----------------------------------
T ss_pred             -----ccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCceeEEe-----------------------------------
Confidence                 67889999  789999999999999999999887654322                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                ..|...|.+++|+|++++|++| .|+.|++||++ .++.+..       +.+|.
T Consensus       161 --------------------------~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~-~~~~~~~-------~~~h~  206 (321)
T 3ow8_A          161 --------------------------DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA-TGKLLHT-------LEGHA  206 (321)
T ss_dssp             --------------------------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCS
T ss_pred             --------------------------cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC-CCcEEEE-------EcccC
Confidence                                      4567789999999999999999 99999999998 5555544       57899


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      ..|.+++|+|++ .+|++|+.|+.|++||+++++..    ..             +.+|...|.+++|+|++++|++++.
T Consensus       207 ~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~----~~-------------~~~h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          207 MPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLA----GT-------------LSGHASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             SCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEE----EE-------------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CceeEEEEcCCC-CEEEEEcCCCeEEEEECCCccee----EE-------------EcCCCCceEEEEECCCCCEEEEEeC
Confidence            999999999999 99999999999999999886432    12             3567889999999999999999875


Q ss_pred             -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                       +.|++||+++ ++++..+.+|...+               .+++|+|++.+|++++.||.|++||+.
T Consensus       269 D~~v~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          269 DKSVKVWDVGT-RTCVHTFFDHQDQV---------------WGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCcEEEEeCCC-CEEEEEEcCCCCcE---------------EEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence             9999999986 78888888888765               699999999999999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-38  Score=298.46  Aligned_cols=242  Identities=20%  Similarity=0.340  Sum_probs=210.7

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|.+++|+|++++||+|+.|++|+|||+.+.+                           ++..+.+|.       
T Consensus       147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~---------------------------~~~~~~~h~-------  192 (410)
T 1vyh_C          147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE---------------------------CIRTMHGHD-------  192 (410)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC---------------------------EEECCCCCS-------
T ss_pred             eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------------------------eeEEEcCCC-------
Confidence            3599999999999999999999999999999987654                           556788898       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++|  +|++.+|++++.|++|++||+.++.....+                                   
T Consensus       193 -----~~V~~v~~--~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-----------------------------------  230 (410)
T 1vyh_C          193 -----HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVKTF-----------------------------------  230 (410)
T ss_dssp             -----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------
T ss_pred             -----CCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence                 88999999  688999999999999999999887654331                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                .+|...|.++.++|++.+|++| .|+.|++||+. .+.....       +.+|.
T Consensus       231 --------------------------~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~-~~~~~~~-------~~~h~  276 (410)
T 1vyh_C          231 --------------------------TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-TKECKAE-------LREHR  276 (410)
T ss_dssp             --------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCS
T ss_pred             --------------------------eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC-CCceeeE-------ecCCC
Confidence                                      5788899999999999999999 99999999998 4555543       57899


Q ss_pred             CceEEEEEecC--------------------CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721          268 EVITSAEFHPI--------------------YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (457)
Q Consensus       268 ~~i~~v~~~p~--------------------~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  327 (457)
                      ..|.+++|+|+                    + .+|++|+.|+.|++||+++++..    ..             +.+|.
T Consensus       277 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~~i~iwd~~~~~~~----~~-------------~~~h~  338 (410)
T 1vyh_C          277 HVVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMCL----MT-------------LVGHD  338 (410)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTTEEE----EE-------------EECCS
T ss_pred             ceEEEEEEcCcccccchhhhccccccccCCCC-CEEEEEeCCCeEEEEECCCCceE----EE-------------EECCC
Confidence            99999999996                    4 68999999999999999987543    22             35577


Q ss_pred             cceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                      ..|.+++|+|+|++|+++++ +.|++||+.. ++++..+.+|...+               ++++|+|++.+|++|+.||
T Consensus       339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v---------------~~l~~~~~~~~l~sgs~D~  402 (410)
T 1vyh_C          339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFV---------------TSLDFHKTAPYVVTGSVDQ  402 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCE---------------EEEEECSSSSCEEEEETTS
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCCcE---------------EEEEEcCCCCEEEEEeCCC
Confidence            89999999999999999875 9999999975 78888999998765               7999999999999999999


Q ss_pred             cEEEEecC
Q 012721          407 LLRIFSHG  414 (457)
Q Consensus       407 ~i~iw~~~  414 (457)
                      +|++|+++
T Consensus       403 ~i~vW~~r  410 (410)
T 1vyh_C          403 TVKVWECR  410 (410)
T ss_dssp             EEEEEC--
T ss_pred             cEEEEeCC
Confidence            99999964

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-38  Score=285.80  Aligned_cols=284  Identities=14%  Similarity=0.197  Sum_probs=206.1

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee-cc-CCcccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QS-HEPEFDYL  107 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~  107 (457)
                      .|.++|++++|+|+  +||+|+.|++|+||++..+..                         .....+ .+ |.      
T Consensus        12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------------~~~~~~~~~~h~------   58 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------------TLIDVLDETAHK------   58 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------------EEEEEECTTCCC------
T ss_pred             cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------------EEEEEEecCCcc------
Confidence            49999999999987  999999999999999876532                         133334 33 77      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            +.|.+++|  +|++++|++++.|++|++|++.......                                    
T Consensus        59 ------~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~------------------------------------   94 (330)
T 2hes_X           59 ------KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRT------------------------------------   94 (330)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSCEEEEEC-------------------------------------------
T ss_pred             ------CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCcc------------------------------------
Confidence                  88999999  7899999999999999999986432100                                    


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                       ...+++..+ .+|...|.+++|+|++++|++| .|+.|++||++..+.....+    ..+.+|
T Consensus        95 -----------------~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~----~~~~~h  152 (330)
T 2hes_X           95 -----------------FEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI----SVLQEH  152 (330)
T ss_dssp             -----------------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE----EEECCC
T ss_pred             -----------------ccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE----EEeccC
Confidence                             000122222 7899999999999999999999 99999999995333221111    126789


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC--CCeEEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLS  344 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s  344 (457)
                      ...|.+++|+|++ .+|++++.|++|++||.+.+...     .          ...+.+|...|.+++|+|+  +.+|++
T Consensus       153 ~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~-----~----------~~~~~~h~~~v~~~~~~~~~~~~~l~s  216 (330)
T 2hes_X          153 SQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWE-----C----------VAVLNGHEGTVWSSDFDKTEGVFRLCS  216 (330)
T ss_dssp             SSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE-----E----------EEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred             CCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCee-----E----------EEEccCCCCcEEEEEecCCCCeeEEEE
Confidence            9999999999999 99999999999999998765210     0          1124567889999999998  678888


Q ss_pred             Eec-CcEEEEeccCCC-------CceeEeee-ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721          345 RDY-MNLKLWDIRMDS-------TPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       345 ~~~-~~i~~wd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      +++ ++|++||++...       .....+.. |...+               ++++|++++ +|++++.||.|++|+..+
T Consensus       217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~v~~s~~~-~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV---------------YNVAWGFNG-LIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCE---------------EEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred             EeCCCeEEEEEecCCCccccceeEEeeecccccccce---------------EEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence            875 999999996421       12222322 44433               789999765 899999999999999987


Q ss_pred             CCc-ee-eEEecCCC-cceeeeecc--CCcceec
Q 012721          416 GSA-GG-ITVEAGKN-ENRKPILQA--APRARRS  444 (457)
Q Consensus       416 ~~~-~~-~~~~~~~~-~v~~~~~~p--~~~~~~~  444 (457)
                      ++. .. ....+|.. .+.+++|+|  ++...++
T Consensus       281 ~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las  314 (330)
T 2hes_X          281 GEWKVFAKRALCHGVYEINVVKWLELNGKTILAT  314 (330)
T ss_dssp             TEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred             CceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence            731 12 23367887 899999999  5665555

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-37  Score=286.17  Aligned_cols=244  Identities=23%  Similarity=0.375  Sum_probs=207.3

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|...|.+++|+|++++||+|+.|+.|++|++.+.+.                       .......+.+|.        
T Consensus        95 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-----------------------~~~~~~~~~~h~--------  143 (340)
T 1got_B           95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------------------NVRVSRELAGHT--------  143 (340)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-----------------------SCEEEEEEECCS--------
T ss_pred             cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-----------------------cceeEEEecCCC--------
Confidence            4788999999999999999999999999999876542                       223556788888        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          +.|.++.|.  +++ .+++++.|++|++||+.+++....+                                    
T Consensus       144 ----~~v~~~~~~--~~~-~l~s~s~d~~i~~wd~~~~~~~~~~------------------------------------  180 (340)
T 1got_B          144 ----GYLSCCRFL--DDN-QIVTSSGDTTCALWDIETGQQTTTF------------------------------------  180 (340)
T ss_dssp             ----SCEEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEEE------------------------------------
T ss_pred             ----ccEEEEEEC--CCC-cEEEEECCCcEEEEECCCCcEEEEE------------------------------------
Confidence                889999994  454 6899999999999999887654321                                    


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                               .+|...|.+++|+|++++|++| .|+.|++||++ .+.....       +.+|..
T Consensus       181 -------------------------~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~-~~~~~~~-------~~~h~~  227 (340)
T 1got_B          181 -------------------------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQT-------FTGHES  227 (340)
T ss_dssp             -------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCSEEEE-------ECCCSS
T ss_pred             -------------------------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-CCeeEEE-------EcCCcC
Confidence                                     5788999999999999999999 99999999998 5555544       578999


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-  347 (457)
                      .|.+++|+|++ ++|++|+.||+|++||+++++..    ..+..           ..+...|.+++|+|+|++|++|++ 
T Consensus       228 ~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~----~~~~~-----------~~~~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          228 DINAICFFPNG-NAFATGSDDATCRLFDLRADQEL----MTYSH-----------DNIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEE----EEEcc-----------CCcccceEEEEECCCCCEEEEECCC
Confidence            99999999999 99999999999999999987543    12211           122357999999999999999875 


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      +.|++||+.. .+.+..+.+|...+               .+++|+||+.+|++|+.|+.|+|||
T Consensus       292 ~~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          292 FNCNVWDALK-ADRAGVLAGHDNRV---------------SCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CeEEEEEccc-CcEeeEeecCCCcE---------------EEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999975 78888899998865               6899999999999999999999997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.6e-38  Score=281.75  Aligned_cols=258  Identities=15%  Similarity=0.229  Sum_probs=200.5

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|+|++||+|+.|++|+||++.+...                         +.+.++.+|.       
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-------------------------~~~~~l~gH~-------   53 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------------------KLIDTLTGHE-------   53 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-------------------------CCCEEECCCS-------
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-------------------------EEEEEEcccc-------
Confidence            35999999999999999999999999999999875422                         2456789999       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ++|.+++|.+..++++|++++.|++|++||+.+++....                                    
T Consensus        54 -----~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------   92 (297)
T 2pm7_B           54 -----GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI------------------------------------   92 (297)
T ss_dssp             -----SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC------------------------------------
T ss_pred             -----CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE------------------------------------
Confidence                 889999995322488999999999999999987642211                                    


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                            ..+ .+|...|.+++|+|+  +.+|+++ .|+.|++||++.......      ..+.+
T Consensus        93 ----------------------~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~------~~~~~  143 (297)
T 2pm7_B           93 ----------------------AVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP------IIIDA  143 (297)
T ss_dssp             ----------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC------EEEEC
T ss_pred             ----------------------EEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee------eeeec
Confidence                                  111 578889999999997  8899999 999999999984322211      12578


Q ss_pred             CCCceEEEEEecCC------------ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEE
Q 012721          266 LTEVITSAEFHPIY------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (457)
Q Consensus       266 ~~~~i~~v~~~p~~------------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  333 (457)
                      |...|.+++|+|++            ..+|++|+.|++|++||+++++...   ..          ...+.+|...|.++
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~---~~----------~~~l~~H~~~V~~v  210 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY---VL----------ESTLEGHSDWVRDV  210 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE---EE----------EEEECCCSSCEEEE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE---EE----------EEEecCCCCceEEE
Confidence            99999999999972            1699999999999999998753110   00          11246788999999


Q ss_pred             EEccCC---CeEEEEec-CcEEEEeccCCCCc-e-eEe--eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721          334 KFANDG---QHLLSRDY-MNLKLWDIRMDSTP-V-ATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  405 (457)
Q Consensus       334 ~~s~~g---~~l~s~~~-~~i~~wd~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  405 (457)
                      +|+|++   .+|++++. ++|++||++..... . ..+  ..|...+               .+++|+|++++||+++.|
T Consensus       211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE---------------EEEEECSSSCCEEEEETT
T ss_pred             EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcE---------------EEEEECCCCCEEEEEcCC
Confidence            999985   88998874 99999999752211 1 122  2333332               689999999999999999


Q ss_pred             CcEEEEecCCC
Q 012721          406 NLLRIFSHGVG  416 (457)
Q Consensus       406 g~i~iw~~~~~  416 (457)
                      +.|+||+....
T Consensus       276 ~~v~lw~~~~~  286 (297)
T 2pm7_B          276 NKVTLWKENLE  286 (297)
T ss_dssp             SCEEEEEECTT
T ss_pred             CcEEEEEECCC
Confidence            99999998743

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-38  Score=299.05  Aligned_cols=329  Identities=12%  Similarity=0.170  Sum_probs=248.6

Q ss_pred             cccCCceEEEEECCCCC-EEEEE----------eCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee
Q 012721           29 LQDVDIVSAIEFDKTGD-YLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF   97 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~-~latg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (457)
                      +.+...|.+++|+|+++ +||+|          +.|+.|+||++.++...                        +.+.. 
T Consensus         9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------------~~~~~-   63 (416)
T 2pm9_A            9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------------KPIAS-   63 (416)
T ss_dssp             -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------------SCSCC-
T ss_pred             HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------------cEEEE-
Confidence            44667899999999987 99999          88999999999876521                        01111 


Q ss_pred             ccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc---c-ceeEEEeecCCCceeeeeeccccccc
Q 012721           98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD---Q-KVKKIKEMDHFPFVSSENTLLAEKNF  173 (457)
Q Consensus        98 ~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (457)
                      ..|.            ..|.+++|  ++++.+|++++.|+.|++|++..   + +....+ ......+.+++|.+..+..
T Consensus        64 ~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~  128 (416)
T 2pm9_A           64 LQVD------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNV  128 (416)
T ss_dssp             CCCS------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTB
T ss_pred             EecC------------CceEEEEE--CCCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCE
Confidence            2344            78999999  78999999999999999999987   2 222222 2344567888888764444


Q ss_pred             cccCCCCCceeccCCccccccceEEEeccCcc------ccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEE
Q 012721          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSV------HARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWN  245 (457)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd  245 (457)
                      +.+..             .++.+++||+....      ........ ..|...|.+++|+|+ +.+|+++ .|+.|++||
T Consensus       129 l~s~~-------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  194 (416)
T 2pm9_A          129 LASGG-------------NNGEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAHVFASAGSSNFASIWD  194 (416)
T ss_dssp             EEEEC-------------SSSCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred             EEEEc-------------CCCeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence            33322             25689999998654      22222222 678999999999998 7889998 999999999


Q ss_pred             cCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC---eEEEEEccCCeeeccccccccccccccCcccc
Q 012721          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (457)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (457)
                      ++ .++....+... ....+|...+.+++|+|++..+|++++.|+   .|++||++++...   ...             
T Consensus       195 ~~-~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~-------------  256 (416)
T 2pm9_A          195 LK-AKKEVIHLSYT-SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQT-------------  256 (416)
T ss_dssp             TT-TTEEEEEECCC-CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBC-------------
T ss_pred             CC-CCCcceEEecc-ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEE-------------
Confidence            98 55555443211 112234789999999999757999999998   9999999885311   111             


Q ss_pred             ee-ccccceEEEEEcc-CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cE
Q 012721          323 FT-EIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LH  398 (457)
Q Consensus       323 ~~-~h~~~v~~~~~s~-~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~  398 (457)
                      +. +|...|.+++|+| ++++|++++. +.|++||++. ++++..+..|...+               ++++|+|++ .+
T Consensus       257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~~  320 (416)
T 2pm9_A          257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWC---------------FKTKFAPEAPDL  320 (416)
T ss_dssp             CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCC---------------CCEEECTTCTTE
T ss_pred             eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCce---------------EEEEECCCCCCE
Confidence            23 5678999999999 8999999875 9999999986 78888898888765               689999998 89


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeE----------------------------------EecCCCcceeeeeccCCcceec
Q 012721          399 FATGSYSNLLRIFSHGVGSAGGIT----------------------------------VEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       399 l~s~~~dg~i~iw~~~~~~~~~~~----------------------------------~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      |++++.|+.|++|++.++......                                  ...|..++..++|+|++...++
T Consensus       321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~  400 (416)
T 2pm9_A          321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI  400 (416)
T ss_dssp             EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred             EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence            999999999999999887432211                                  0116788889999999998887


Q ss_pred             c
Q 012721          445 S  445 (457)
Q Consensus       445 ~  445 (457)
                      |
T Consensus       401 ~  401 (416)
T 2pm9_A          401 T  401 (416)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.2e-37  Score=309.25  Aligned_cols=307  Identities=17%  Similarity=0.219  Sum_probs=231.6

Q ss_pred             ccccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ...|.+.|++++|+|++ ++|+||+.|++|+||++......                      .......+.+|.     
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------------~~~~~~~~~~h~-----  430 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------------YGVAQRRLTGHS-----  430 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------------SCEEEEEEECCS-----
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------------cccccceecCCC-----
Confidence            34599999999999865 79999999999999999765431                      122456788998     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ..|.+++|  ++++++|++++.|++|++||+.++.....+.. ....|.+++|++....++....        
T Consensus       431 -------~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~--------  492 (694)
T 3dm0_A          431 -------HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNRQIVSASR--------  492 (694)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEEEET--------
T ss_pred             -------CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCCEEEEEeC--------
Confidence                   88999999  78999999999999999999999877655543 3455888888765544443332        


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                            ++.+++||............ ..+|...|.+++|+|++  ..|+++ .|+.|++||++ ..+....       +
T Consensus       493 ------D~~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~-------~  557 (694)
T 3dm0_A          493 ------DRTIKLWNTLGECKYTISEG-GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKLRST-------L  557 (694)
T ss_dssp             ------TSCEEEECTTSCEEEEECSS-TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TCCEEEE-------E
T ss_pred             ------CCEEEEEECCCCcceeeccC-CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC-CCcEEEE-------E
Confidence                  66899999754322221111 15789999999999986  578888 99999999998 5555543       6


Q ss_pred             cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      .+|...|++++|+|++ ++|++|+.||.|++||+++++..    ..+..              ...|.+++|+|++.+|+
T Consensus       558 ~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~l~  618 (694)
T 3dm0_A          558 AGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL----YSLEA--------------NSVIHALCFSPNRYWLC  618 (694)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE----ECCBC--------------SSCEEEEEECSSSSEEE
T ss_pred             cCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE----EEecC--------------CCcEEEEEEcCCCcEEE
Confidence            7899999999999999 99999999999999999988643    22222              35799999999999999


Q ss_pred             EEecCcEEEEeccCCCCceeEeeeccccccccc----cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          344 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC----DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       344 s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      +++++.|++||++. ++.+..+..+........    ..........+++++|+|||++|++|+.||.|+||++.
T Consensus       619 ~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          619 AATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            99888899999985 666666554322110000    00000111223689999999999999999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-37  Score=295.37  Aligned_cols=287  Identities=13%  Similarity=0.130  Sum_probs=220.3

Q ss_pred             ccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        30 ~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .|...|+||+|+| ++++||+|+.||+|+|||+.+++..                         ....+.+|.       
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------~~~~~~gH~-------  164 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------TFIKGIGAG-------  164 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------EEECCCSSS-------
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------eEEEccCCC-------
Confidence            4788999999999 5689999999999999999876542                         445667888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           +.|++|+|+| .++.+|++++.|++|++||++++........                                 
T Consensus       165 -----~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---------------------------------  205 (435)
T 4e54_B          165 -----GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFASS---------------------------------  205 (435)
T ss_dssp             -----CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEECC---------------------------------
T ss_pred             -----CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEecc---------------------------------
Confidence                 8899999942 3678999999999999999987644322110                                 


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                ..+...+.+++|+|++.+|++| .|+.|++||++ .. .+.       .+.+|.
T Consensus       206 --------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~-~~~-------~~~~h~  250 (435)
T 4e54_B          206 --------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GK-ELW-------NLRMHK  250 (435)
T ss_dssp             --------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SC-BCC-------CSBCCS
T ss_pred             --------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cc-eeE-------EEeccc
Confidence                                      2345567899999999999999 99999999997 33 222       367899


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      ..|.+++|+|++..+|++|+.|+.|++||+++.+..    ..+          ....+|...|++++|+|+|++|++++.
T Consensus       251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~----~~~----------~~~~~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK----ASF----------LYSLPHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS----SCC----------SBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred             ceEEeeeecCCCceEEEEecCcceeeEEeccccccc----ceE----------EEeeeccccccceeECCCCCeeEEEcC
Confidence            999999999998568999999999999999886432    111          112467889999999999999999875


Q ss_pred             -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe------------CCCcEEEEecC
Q 012721          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS------------YSNLLRIFSHG  414 (457)
Q Consensus       348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~------------~dg~i~iw~~~  414 (457)
                       +.|++||+.. +.....+..|.......         .....+.|+|++.++++++            .++.|++||..
T Consensus       317 D~~i~iwd~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~  386 (435)
T 4e54_B          317 KSEIRVYSASQ-WDCPLGLIPHPHRHFQH---------LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN  386 (435)
T ss_dssp             SSCEEEEESSS-SSSEEEECCCCCCCCSS---------SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred             CCEEEEEECCC-CccceEEeccccccccc---------ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence             9999999986 66666666655432100         0113566777777666654            34679999999


Q ss_pred             CCCceeeEEecCCCcceee-eeccCCcceeccc
Q 012721          415 VGSAGGITVEAGKNENRKP-ILQAAPRARRSSL  446 (457)
Q Consensus       415 ~~~~~~~~~~~~~~~v~~~-~~~p~~~~~~~~~  446 (457)
                      +++.......+|...|.++ +|+|++...++|-
T Consensus       387 ~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          387 SGKMMCQLYDPESSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             SCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred             CCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence            9944444456888999988 6999999888753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.9e-38  Score=283.88  Aligned_cols=258  Identities=15%  Similarity=0.204  Sum_probs=199.2

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|+|++||+|+.|++|+|||+.++..                         ..+..+.+|.       
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------------~~~~~l~gH~-------   57 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------------ILIADLRGHE-------   57 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------------EEEEEEECCS-------
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------------EEEEEEcCCC-------
Confidence            35999999999999999999999999999999987642                         1456788999       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           +.|.+++|.+..++++|++++.|++|++||+.++.......                                  
T Consensus        58 -----~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~----------------------------------   98 (316)
T 3bg1_A           58 -----GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE----------------------------------   98 (316)
T ss_dssp             -----SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE----------------------------------
T ss_pred             -----ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE----------------------------------
Confidence                 88999999532258899999999999999998764322111                                  


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                              + .+|...|.+++|+|+  +.+|++| .|+.|++||++..... ...    ..+.+
T Consensus        99 ------------------------~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~-~~~----~~~~~  148 (316)
T 3bg1_A           99 ------------------------H-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW-EVK----KINNA  148 (316)
T ss_dssp             ------------------------E-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-EEC----CBTTS
T ss_pred             ------------------------c-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-cee----eeecc
Confidence                                    1 578999999999997  7899999 9999999999843221 111    23578


Q ss_pred             CCCceEEEEEecCC----------------ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721          266 LTEVITSAEFHPIY----------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       266 ~~~~i~~v~~~p~~----------------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      |...+.+++|+|+.                ..+|++|+.|++|++||++.....    ..          ...+.+|...
T Consensus       149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~----~~----------~~~l~~h~~~  214 (316)
T 3bg1_A          149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW----KE----------EQKLEAHSDW  214 (316)
T ss_dssp             SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE----EE----------EECCBCCSSC
T ss_pred             ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc----ce----------eeecccCCCc
Confidence            99999999999972                168999999999999999754210    00          1124568889


Q ss_pred             eEEEEEccCC----CeEEEEec-CcEEEEeccCCC---CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721          330 ISDIKFANDG----QHLLSRDY-MNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (457)
Q Consensus       330 v~~~~~s~~g----~~l~s~~~-~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  401 (457)
                      |.+++|+|++    ++|++++. ++|++||++...   .....+..|...+               ++++|+|++++|++
T Consensus       215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v---------------~~v~~sp~g~~las  279 (316)
T 3bg1_A          215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV---------------WHVSWSITANILAV  279 (316)
T ss_dssp             EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE---------------EEEEECTTTCCEEE
T ss_pred             eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE---------------EEEEEcCCCCEEEE
Confidence            9999999986    78998874 999999987411   1223445565543               69999999999999


Q ss_pred             EeCCCcEEEEecCCC
Q 012721          402 GSYSNLLRIFSHGVG  416 (457)
Q Consensus       402 ~~~dg~i~iw~~~~~  416 (457)
                      ++.|++|++|+....
T Consensus       280 ~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          280 SGGDNKVTLWKESVD  294 (316)
T ss_dssp             EESSSCEEEEEECTT
T ss_pred             EcCCCeEEEEEECCC
Confidence            999999999998643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-36  Score=280.94  Aligned_cols=294  Identities=12%  Similarity=0.132  Sum_probs=238.3

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ...|.+.|++++|+|++++||+|+.||.|+|||+.+++                           .+..+.+|.      
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~------   74 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---------------------------RLGTLDGHT------   74 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC---------------------------EEEEECCCS------
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch---------------------------hhhhhhhcC------
Confidence            34599999999999999999999999999999988765                           456788888      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ..|.+++|  ++++++|++++.|+.|++||+.+++......  ....+.++.|.+....++.....        
T Consensus        75 ------~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~--------  136 (369)
T 3zwl_B           75 ------GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDN--------  136 (369)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECC--------
T ss_pred             ------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCC--------
Confidence                  88999999  7899999999999999999999988776665  55667888887654433332220        


Q ss_pred             CccccccceEEEeccCccccc--------cceeeccCCCC--CeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeee
Q 012721          188 LEWTENMATKIANVGNSVHAR--------CQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV  256 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~h~~--~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  256 (457)
                       .....+.+++|++.......        ....+ ..|..  .+.+++|+|++++|+++ .|+.|++||++........ 
T Consensus       137 -~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-  213 (369)
T 3zwl_B          137 -VMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS-  213 (369)
T ss_dssp             -BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE-
T ss_pred             -ccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE-
Confidence             01123689999987643221        22222 44555  89999999999999999 9999999999943555544 


Q ss_pred             ecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (457)
Q Consensus       257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  336 (457)
                            +..|...|.+++|+|++ .+|++++.||.|++||+++++..    ..+.              +...+..++|+
T Consensus       214 ------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~----~~~~--------------~~~~~~~~~~~  268 (369)
T 3zwl_B          214 ------IDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVL----KKYE--------------TDCPLNTAVIT  268 (369)
T ss_dssp             ------EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEE--------------CSSCEEEEEEC
T ss_pred             ------EecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCcee----eeec--------------CCCCceeEEec
Confidence                  56788999999999999 99999999999999999987543    2222              34689999999


Q ss_pred             cCCCeEEEEec-C--------------cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721          337 NDGQHLLSRDY-M--------------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (457)
Q Consensus       337 ~~g~~l~s~~~-~--------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  401 (457)
                      |+++++++++. +              .+++||+.. ++.+..+.+|...+               .+++|+|++++|++
T Consensus       269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~s  332 (369)
T 3zwl_B          269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGPL---------------NTVAISPQGTSYAS  332 (369)
T ss_dssp             SSSSEEEEEECCC-------------CEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTSSEEEE
T ss_pred             CCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCcE---------------EEEEECCCCCEEEE
Confidence            99999998764 5              899999986 78888888888765               68999999999999


Q ss_pred             EeCCCcEEEEecCCC
Q 012721          402 GSYSNLLRIFSHGVG  416 (457)
Q Consensus       402 ~~~dg~i~iw~~~~~  416 (457)
                      ++.||.|++|++.++
T Consensus       333 ~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          333 GGEDGFIRLHHFEKS  347 (369)
T ss_dssp             EETTSEEEEEEECHH
T ss_pred             EcCCCeEEEEECccc
Confidence            999999999999876

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.7e-37  Score=287.84  Aligned_cols=294  Identities=14%  Similarity=0.146  Sum_probs=230.8

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      |.++|++++|+|++++||+|+.|+.|+||++.+++.                         +.+..+.+|.         
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-------------------------~~~~~~~~h~---------   52 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------------VQVHELKEHN---------   52 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------------EEEEEEECCS---------
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-------------------------EeeeeecCCC---------
Confidence            889999999999999999999999999999987642                         2456778888         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEe-ecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE-MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                         ..|.+++|  ++++++|++++.|+.|++||+.+++...... ......+.+++|.+....++...            
T Consensus        53 ---~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------  115 (372)
T 1k8k_C           53 ---GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS------------  115 (372)
T ss_dssp             ---SCEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE------------
T ss_pred             ---CcccEEEE--eCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe------------
Confidence               88999999  6799999999999999999999887655544 33455677888876443333222            


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC-----------------Ccc
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-----------------SDQ  251 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~-----------------~~~  251 (457)
                        .++.+++|+++..........+..+|...|.+++|+|++++|+++ .|+.|++||++.                 .+.
T Consensus       116 --~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
T 1k8k_C          116 --GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  193 (372)
T ss_dssp             --TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             --CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence              256899999987654444455547889999999999999999999 999999999641                 223


Q ss_pred             eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  331 (457)
                      ....       +.+|...|.+++|+|++ .+|++++.||.|++||+++++..    ..             +..|...|.
T Consensus       194 ~~~~-------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~-------------~~~~~~~v~  248 (372)
T 1k8k_C          194 LMFE-------SSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAV----AT-------------LASETLPLL  248 (372)
T ss_dssp             EEEE-------CCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEE----EE-------------EECSSCCEE
T ss_pred             heEe-------cCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcee----EE-------------EccCCCCeE
Confidence            3332       56789999999999999 99999999999999999987533    22             234567899


Q ss_pred             EEEEccCCCeEEEEecCcEEEEeccCC-CC--ce------------------------------------eEe-eecccc
Q 012721          332 DIKFANDGQHLLSRDYMNLKLWDIRMD-ST--PV------------------------------------ATF-KIHEHL  371 (457)
Q Consensus       332 ~~~~s~~g~~l~s~~~~~i~~wd~~~~-~~--~~------------------------------------~~~-~~~~~~  371 (457)
                      +++|+|++++|+++.++.|++|+++.. ++  .+                                    ..+ .+|...
T Consensus       249 ~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  328 (372)
T 1k8k_C          249 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS  328 (372)
T ss_dssp             EEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred             EEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence            999999999999997899999999741 11  11                                    111 133333


Q ss_pred             ccccccccCCCCccccceEEEc-CCC---cEEEEEeCCCcEEEEecCCCC
Q 012721          372 RPKLCDLYNNDSIFDKFECSVS-GDG---LHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       372 ~~~~~~~~~~~~~~~v~~~~~s-~d~---~~l~s~~~dg~i~iw~~~~~~  417 (457)
                                     |++++|. ++|   .+|++|+.||.|++|++.+++
T Consensus       329 ---------------v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          329 ---------------VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             ---------------EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             ---------------cceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                           3789866 677   999999999999999998763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.4e-37  Score=284.29  Aligned_cols=253  Identities=18%  Similarity=0.239  Sum_probs=194.1

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..+|.+.|.+++|+|++.+| +++.||+|+|||+.+++..                       ........+|.      
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~h~------  139 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESL-----------------------LVNKFAKYEHD------  139 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEE-EEETTSCEEEC-------------------------------CCCCEEECCCS------
T ss_pred             cCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeecccccee-----------------------EEEeeccCCCC------
Confidence            34688999999999998655 5678999999999877642                       01112345677      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ..|.+++|  +|++++|++++.|+.|++||+.+++....+                                  
T Consensus       140 ------~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~~~~~~~----------------------------------  177 (357)
T 4g56_B          140 ------DIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQKAVLKSY----------------------------------  177 (357)
T ss_dssp             ------SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTTEEEEEE----------------------------------
T ss_pred             ------CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEEEE----------------------------------
Confidence                  88999999  789999999999999999999887654332                                  


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                 .+|...|++++|+|++. +++++ .|+.|++||++ .++....+     ....
T Consensus       178 ---------------------------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~-~~~~~~~~-----~~~~  224 (357)
T 4g56_B          178 ---------------------------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR-KPKPATRI-----DFCA  224 (357)
T ss_dssp             ---------------------------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT-SSSCBCBC-----CCTT
T ss_pred             ---------------------------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECC-CCceeeee-----eecc
Confidence                                       57899999999999875 67777 99999999998 44443321     2456


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLS  344 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s  344 (457)
                      |...+.+++|+|++..+|++|+.|+.|++||+++++..    ..             +.+|...|++++|+|++ ++|++
T Consensus       225 ~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~-------------~~~~~~~v~~l~~sp~~~~~las  287 (357)
T 4g56_B          225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QT-------------SAVHSQNITGLAYSYHSSPFLAS  287 (357)
T ss_dssp             CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EE-------------ECCCSSCEEEEEECSSSSCCEEE
T ss_pred             ccccccchhhhhcccceEEEeecccceeEEECCCCcEe----EE-------------EeccceeEEEEEEcCCCCCEEEE
Confidence            77889999999987589999999999999999886432    22             34567899999999987 57888


Q ss_pred             Eec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCce
Q 012721          345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAG  419 (457)
Q Consensus       345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~  419 (457)
                      ++. ++|+|||+++ ++++.. .+|...+               ++++|+| |+.+|++++.||+|++|++.+..+.
T Consensus       288 gs~D~~i~iwd~~~-~~~~~~-~~H~~~V---------------~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          288 ISEDCTVAVLDADF-SEVFRD-LSHRDFV---------------TGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             EETTSCEEEECTTS-CEEEEE-CCCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             EeCCCEEEEEECCC-CcEeEE-CCCCCCE---------------EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            875 9999999985 565544 4677665               7999998 7999999999999999999875333

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-36  Score=285.41  Aligned_cols=259  Identities=16%  Similarity=0.249  Sum_probs=204.9

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...|++++|+|+|++||+|+.|++|+|||+.+++                           .+..+.+|.          
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~---------------------------~~~~~~~h~----------  165 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHE----------  165 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS----------
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------------------EEEEEccCC----------
Confidence            3459999999999999999999999999998665                           456788998          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        ..|.+++|  ++++.+|++++.|++|++||+.+++.....                                      
T Consensus       166 --~~v~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~--------------------------------------  203 (393)
T 1erj_A          166 --QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLTL--------------------------------------  203 (393)
T ss_dssp             --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEE--------------------------------------
T ss_pred             --CCEEEEEE--cCCCCEEEEecCCCcEEEEECCCCeeEEEE--------------------------------------
Confidence              88999999  789999999999999999999987654332                                      


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                              .+...+.+++|+| ++++|++| .|+.|++||++ .+.....+........+|...
T Consensus       204 ------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~-~~~~~~~~~~~~~~~~~h~~~  258 (393)
T 1erj_A          204 ------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDS  258 (393)
T ss_dssp             ------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC------CCCSSC
T ss_pred             ------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC-CCcEEEeecccccCCCCCCCC
Confidence                                    2445789999999 89999999 99999999998 555554433222234679999


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~  348 (457)
                      |.+++|+|++ .+|++|+.||.|++||++......    .... .........+.+|...|.+++|+|++++|++|+. +
T Consensus       259 v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~----~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~  332 (393)
T 1erj_A          259 VYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKS----DSKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR  332 (393)
T ss_dssp             EEEEEECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred             EEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcc----cccC-CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence            9999999999 999999999999999998754221    0000 0111122346788999999999999999999875 9


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC------CCcEEEEEeCCCcEEEEecCCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      .|++||+++ ++++..+.+|...+               .+++|++      ++.+|++|+.||+|+||++...
T Consensus       333 ~v~iwd~~~-~~~~~~l~~h~~~v---------------~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          333 GVLFWDKKS-GNPLLMLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEEEETTT-CCEEEEEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             eEEEEECCC-CeEEEEECCCCCCE---------------EEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            999999986 78888999998765               5788775      7899999999999999998654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.8e-36  Score=277.76  Aligned_cols=247  Identities=22%  Similarity=0.353  Sum_probs=206.0

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|...|.+++|+|+|.+||+|+.|+.+++|++......                     ........+.+|.        
T Consensus       104 ~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~---------------------~~~~~~~~~~~h~--------  154 (354)
T 2pbi_B          104 MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE---------------------NMAAKKKSVAMHT--------  154 (354)
T ss_dssp             CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC---------------------CSGGGCEEEEECS--------
T ss_pred             cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc---------------------cccccceeeeccC--------
Confidence            37788999999999999999999999999998754321                     0112344567787        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..|.+++|  ++++..|++++.|++|++||+.+++....+                                    
T Consensus       155 ----~~v~~~~~--~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~------------------------------------  192 (354)
T 2pbi_B          155 ----NYLSACSF--TNSDMQILTASGDGTCALWDVESGQLLQSF------------------------------------  192 (354)
T ss_dssp             ----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEEE------------------------------------
T ss_pred             ----CcEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCeEEEEE------------------------------------
Confidence                88999999  688899999999999999999987654332                                    


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                               .+|...|.+++|+|  ++++|++| .|+.|++||++ .+++...       +.+|
T Consensus       193 -------------------------~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~-~~~~~~~-------~~~h  239 (354)
T 2pbi_B          193 -------------------------HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQA-------FETH  239 (354)
T ss_dssp             -------------------------ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT-TCCEEEE-------ECCC
T ss_pred             -------------------------cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------ecCC
Confidence                                     57888999999987  57899999 99999999999 5666554       5789


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ...|.+++|+|++ .+|++++.|++|++||++.++..    ..+..           ..+...+.+++|+|+|++|++|+
T Consensus       240 ~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~----~~~~~-----------~~~~~~~~~~~~s~~g~~l~~g~  303 (354)
T 2pbi_B          240 ESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREV----AIYSK-----------ESIIFGASSVDFSLSGRLLFAGY  303 (354)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEcC-----------CCcccceeEEEEeCCCCEEEEEE
Confidence            9999999999999 99999999999999999987533    22221           11234689999999999999987


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      . +.|++||+.. ++.+..+.+|...+               ++++|+||+++|++|+.|++|+||+
T Consensus       304 ~d~~i~vwd~~~-~~~~~~l~~h~~~v---------------~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          304 NDYTINVWDVLK-GSRVSILFGHENRV---------------STLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTSCEEEEETTT-CSEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCcEEEEECCC-CceEEEEECCCCcE---------------EEEEECCCCCEEEEEcCCCCEEecC
Confidence            5 9999999975 78888888898765               6999999999999999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.7e-35  Score=269.38  Aligned_cols=272  Identities=14%  Similarity=0.195  Sum_probs=222.9

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec--cCCccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDY  106 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~  106 (457)
                      ..|.+.|++++|+|++++|++++ ||.|++|++.+++..                        ..+..+.  +|.     
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~------------------------~~~~~~~~~~~~-----   97 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------------SPVSQLDCLNRD-----   97 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------------SCSEEEECSCTT-----
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce------------------------eeeecccccCCC-----
Confidence            46999999999999999999999 999999999876532                        1122222  565     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ..|.+++|  ++++++|++++.|+.|++||+.+++......                                
T Consensus        98 -------~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------------------------------  136 (337)
T 1gxr_A           98 -------NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAE--------------------------------  136 (337)
T ss_dssp             -------SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEE--------------------------------
T ss_pred             -------CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceeee--------------------------------
Confidence                   88999999  7899999999999999999998875322211                                


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                 +..|...|.+++|+|++++|+++ .|+.|++||++ .++....       +..
T Consensus       137 ---------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~-------~~~  181 (337)
T 1gxr_A          137 ---------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQG  181 (337)
T ss_dssp             ---------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECC
T ss_pred             ---------------------------cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeee-------eec
Confidence                                       15688899999999999999999 99999999998 5555544       567


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      |...+.+++|+|++ ++|++++.||.|++||+++++..    ..+              .|...+.+++|+|++++|+++
T Consensus       182 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~--------------~~~~~v~~~~~s~~~~~l~~~  242 (337)
T 1gxr_A          182 HTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQH--------------DFTSQIFSLGYCPTGEWLAVG  242 (337)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEE--------------ECSSCEEEEEECTTSSEEEEE
T ss_pred             ccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eee--------------cCCCceEEEEECCCCCEEEEE
Confidence            88999999999999 99999999999999999987543    111              234679999999999999998


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      +. +.|++||++. .+ ...+..|...+               .+++|+|++++|++++.||.|++|++.+++ .. ...
T Consensus       243 ~~~~~i~~~~~~~-~~-~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~-~~-~~~  303 (337)
T 1gxr_A          243 MESSNVEVLHVNK-PD-KYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SI-FQS  303 (337)
T ss_dssp             ETTSCEEEEETTS-SC-EEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCC-EE-EEE
T ss_pred             cCCCcEEEEECCC-CC-eEEEcCCccce---------------eEEEECCCCCEEEEecCCCcEEEEECCCCe-EE-EEe
Confidence            75 9999999975 33 34556666554               689999999999999999999999999983 33 445


Q ss_pred             cCCCcceeeeeccCCcceec
Q 012721          425 AGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       425 ~~~~~v~~~~~~p~~~~~~~  444 (457)
                      .|..++.++.|+|++....+
T Consensus       304 ~~~~~v~~~~~s~~~~~l~~  323 (337)
T 1gxr_A          304 KESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             ECSSCEEEEEECTTSCEEEE
T ss_pred             cCCCcEEEEEECCCCCEEEE
Confidence            68999999999999987766

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.8e-36  Score=279.71  Aligned_cols=289  Identities=16%  Similarity=0.155  Sum_probs=221.4

Q ss_pred             cccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..|.+.|++++|+|++ ++||+|+.||.|+|||+.+++..                         ....+.+|.      
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~h~------  118 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------SFIQGMGPG------  118 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-------------------------EEECCCSTT------
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-------------------------eeeecCCcC------
Confidence            3589999999999999 99999999999999999876642                         222334677      


Q ss_pred             ccccccCcEEEEEEEecC-CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                            ..|.+++|  ++ ++.+|++++.|+.|++||+.+........                                
T Consensus       119 ------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------------------  158 (383)
T 3ei3_B          119 ------DAITGMKF--NQFNTNQLFVSSIRGATTLRDFSGSVIQVFAK--------------------------------  158 (383)
T ss_dssp             ------CBEEEEEE--ETTEEEEEEEEETTTEEEEEETTSCEEEEEEC--------------------------------
T ss_pred             ------CceeEEEe--CCCCCCEEEEEeCCCEEEEEECCCCceEEEec--------------------------------
Confidence                  88999999  56 67899999999999999998643322211                                


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                 ...|...|.+++|+|++++|+++ .|+.|++||++  +.....       +.+
T Consensus       159 ---------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~-------~~~  202 (383)
T 3ei3_B          159 ---------------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFK-------EKL  202 (383)
T ss_dssp             ---------------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEE-------EEC
T ss_pred             ---------------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEE-------ecc
Confidence                                       03566889999999999999999 99999999996  334433       567


Q ss_pred             CCCceEEEEEecCCcc-EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEE
Q 012721          266 LTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLL  343 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~  343 (457)
                      |...|.+++|+|++ . +|++++.|+.|++||+++.+...   ....           ..+|...|.+++|+| ++++|+
T Consensus       203 h~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~-----------~~~~~~~v~~~~~s~~~~~~l~  267 (383)
T 3ei3_B          203 HKAKVTHAEFNPRC-DWLMATSSVDATVKLWDLRNIKDKN---SYIA-----------EMPHEKPVNAAYFNPTDSTKLL  267 (383)
T ss_dssp             SSSCEEEEEECSSC-TTEEEEEETTSEEEEEEGGGCCSTT---CEEE-----------EEECSSCEEEEEECTTTSCEEE
T ss_pred             CCCcEEEEEECCCC-CCEEEEEeCCCEEEEEeCCCCCccc---ceEE-----------EecCCCceEEEEEcCCCCCEEE
Confidence            99999999999999 6 99999999999999999843211   1111           124678999999999 999999


Q ss_pred             EEec-CcEEEEeccCCCCceeEeeeccccccccc----cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721          344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC----DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  418 (457)
Q Consensus       344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~  418 (457)
                      +++. +.|++||++. ++....+..|........    ..+.++  ..+..++|+||+++  +++.|+.|++||+.++ +
T Consensus       268 ~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~-~  341 (383)
T 3ei3_B          268 TTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPM--YDLIVAGRYPDDQL--LLNDKRTIDIYDANSG-G  341 (383)
T ss_dssp             EEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSS--SSEEEEECBCCTTT--CTTCCCCEEEEETTTC-C
T ss_pred             EEcCCCcEEEEECCC-CccccccccccccccccccceEEeccCC--CCceEEEecCCccc--ccCCCCeEEEEecCCC-c
Confidence            8875 9999999986 666667766643221000    000000  01134666777766  7789999999999998 6


Q ss_pred             eeeEEec--CCCcceeeeeccCCcceecc
Q 012721          419 GGITVEA--GKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       419 ~~~~~~~--~~~~v~~~~~~p~~~~~~~~  445 (457)
                      ....+.+  |...+..++|+|++...++|
T Consensus       342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          342 LVHQLRDPNAAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             EEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred             eeeeecCCCCCceEEEEEEecCccEEEEe
Confidence            6777876  56778888999999988885

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.7e-36  Score=279.95  Aligned_cols=306  Identities=11%  Similarity=0.097  Sum_probs=228.8

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|++++|+|  ++||+|+.||.|+||++.+++..                     .....+..+.+|.        
T Consensus        14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~h~--------   62 (397)
T 1sq9_A           14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHK--------   62 (397)
T ss_dssp             CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCT--------
T ss_pred             hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc---------------------cCCCcceEEecCC--------
Confidence            4999999999998  89999999999999999877621                     1233556777888        


Q ss_pred             ccccCcEEEEEEEecCC----C---CEEEEeeCCCeEEEEEecccce-----eEEEeecC----CCceeeeeec----cc
Q 012721          110 LEIEEKINRVRWCAAPN----G---SMFILSTNDKTIKLWKVRDQKV-----KKIKEMDH----FPFVSSENTL----LA  169 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~----~---~~l~s~s~d~~i~vw~~~~~~~-----~~~~~~~~----~~~~~~~~~~----~~  169 (457)
                          ..|.+++|.  ++    +   .+|++++.|+.|++|++.+++.     ........    ...+.+++|.    +.
T Consensus        63 ----~~v~~~~~~--~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  136 (397)
T 1sq9_A           63 ----SGLHHVDVL--QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL  136 (397)
T ss_dssp             ----TCEEEEEEE--EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC---
T ss_pred             ----CcEEEEEEe--cccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC
Confidence                889999995  56    7   8999999999999999998874     33333322    3668888888    44


Q ss_pred             ccc-ccccCCCCCceeccCCccccccceEEEeccCccc---cccce-----eec------cCCCCCeeEEEeCCCCCEEE
Q 012721          170 EKN-FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH---ARCQK-----VYP------HAHDFNINSISNNSDCETFV  234 (457)
Q Consensus       170 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~-----~~~------~~h~~~v~~~~~~~~~~~l~  234 (457)
                      ... ++...              .++.+++||+.....   .+++.     .+.      ..|...|.+++|+|++ +|+
T Consensus       137 ~~~~l~~~~--------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~  201 (397)
T 1sq9_A          137 LSHRLVATD--------------VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA  201 (397)
T ss_dssp             -CEEEEEEE--------------TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE
T ss_pred             CceEEEEEe--------------CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEE
Confidence            333 33222              256899999986110   12222     331      3588899999999999 999


Q ss_pred             Ee-CCCeEEEEEcCCCcceeeeeecCCCcccC---C---CCceEEEEEecCCccEEEEEccC---CeEEEEEccCCeeec
Q 012721          235 SA-DDLRINLWNLEISDQCFNIVDMKPSNMDD---L---TEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCD  304 (457)
Q Consensus       235 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~---~~~i~~v~~~p~~~~~l~~~~~d---g~i~lwd~~~~~~~~  304 (457)
                      ++ .|+.|++||++ ..+....       +..   |   ...|.+++|+|++ .+|++++.|   |.|++||+++++.. 
T Consensus       202 ~~~~dg~i~i~d~~-~~~~~~~-------~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~-  271 (397)
T 1sq9_A          202 TGFNNGTVQISELS-TLRPLYN-------FESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERI-  271 (397)
T ss_dssp             EECTTSEEEEEETT-TTEEEEE-------EECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEE-
T ss_pred             EEeCCCcEEEEECC-CCceeEE-------EeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCccc-
Confidence            99 99999999998 4555544       345   7   8999999999999 999999999   99999999987543 


Q ss_pred             cccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEee------ec---------
Q 012721          305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK------IH---------  368 (457)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~------~~---------  368 (457)
                         ..+...............|...|.+++|+|++++|++++. +.|++||++. ++.+..+.      .|         
T Consensus       272 ---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~  347 (397)
T 1sq9_A          272 ---GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDE  347 (397)
T ss_dssp             ---EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred             ---ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhcccc
Confidence               2222100000000001127789999999999999999875 9999999986 78888887      55         


Q ss_pred             ------cccccccccccCCCCccccceEEEcCCC----------cEEEEEeCCCcEEEEecCCC
Q 012721          369 ------EHLRPKLCDLYNNDSIFDKFECSVSGDG----------LHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       369 ------~~~~~~~~~~~~~~~~~~v~~~~~s~d~----------~~l~s~~~dg~i~iw~~~~~  416 (457)
                            ...               |++++|+|++          ++|++++.||.|++|++++|
T Consensus       348 ~~~~~~~~~---------------v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          348 HGDSLAEPG---------------VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             TSCBCSSCC---------------EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccccCCc---------------eeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                  333               3799999998          79999999999999999887

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-36  Score=283.70  Aligned_cols=327  Identities=14%  Similarity=0.166  Sum_probs=240.5

Q ss_pred             ccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEe----cCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCc
Q 012721           28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET----VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP  102 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  102 (457)
                      ...|.+.|++++|+|+++ +||+|+.||.|+||++    .+++..       ..+          .+...+...+.+|. 
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~-  102 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY-------WKL----------TIIAELRHPFALSA-  102 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C-------EEE----------EEEEEEECCCCCC--
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc-------ccc----------cccccccccccccc-
Confidence            344779999999999999 9999999999999999    665520       000          00011111222220 


Q ss_pred             cccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       103 ~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                           ....|.+.|.+++|  ++++++|++++.|+.|++|+ .+++....+. .....+.++.|.+....++...     
T Consensus       103 -----~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-----  168 (425)
T 1r5m_A          103 -----SSGKTTNQVTCLAW--SHDGNSIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMD-----  168 (425)
T ss_dssp             ----------CBCEEEEEE--CTTSSEEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEE-----
T ss_pred             -----cccCCCCceEEEEE--cCCCCEEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEe-----
Confidence                 00112278999999  78999999999999999999 4454444433 2345577888876444333322     


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCC---------------eeEEEeCCCCCEEEEe-CCCeEEEEEc
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN---------------INSISNNSDCETFVSA-DDLRINLWNL  246 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~~~~~~l~~~-~d~~i~iwd~  246 (457)
                               .++.+++|++...   +.+..+ ..+...               +.+++|+|++. ++++ .|+.|++||+
T Consensus       169 ---------~d~~i~iwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~  234 (425)
T 1r5m_A          169 ---------VENVTILWNVISG---TVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQI  234 (425)
T ss_dssp             ---------TTCCEEEEETTTT---EEEEEE-CCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEET
T ss_pred             ---------cCCeEEEEECCCC---cEEEEe-eccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEc
Confidence                     2568999999653   333333 444444               89999998865 6666 9999999999


Q ss_pred             CCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecc
Q 012721          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  326 (457)
                      + .+.....       +..|...|.+++|+|++ .+|++++.||.|++||+++++..    ..             +.+|
T Consensus       235 ~-~~~~~~~-------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~-------------~~~~  288 (425)
T 1r5m_A          235 T-EKTPTGK-------LIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQ----NC-------------FYGH  288 (425)
T ss_dssp             T-CSSCSEE-------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCS----EE-------------ECCC
T ss_pred             C-CCceeee-------eccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccc----eE-------------ecCC
Confidence            8 4444433       56788999999999999 99999999999999999886432    22             2346


Q ss_pred             ccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721          327 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  405 (457)
Q Consensus       327 ~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  405 (457)
                      ...|.+++|+|++ ++++++ ++.|++||++. ++.+..+..|...+               .+++|+|++++|++++.|
T Consensus       289 ~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~s~~~~~l~~~~~d  351 (425)
T 1r5m_A          289 SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPI---------------FAGRISQDGQKYAVAFMD  351 (425)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCCE---------------EEEEECTTSSEEEEEETT
T ss_pred             CccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEecccCCccE---------------EEEEEcCCCCEEEEEECC
Confidence            7889999999999 777776 49999999986 78888888777654               689999999999999999


Q ss_pred             CcEEEEecCCCCc--------------------eeeEEecCCC--cceeeeeccCCcceec
Q 012721          406 NLLRIFSHGVGSA--------------------GGITVEAGKN--ENRKPILQAAPRARRS  444 (457)
Q Consensus       406 g~i~iw~~~~~~~--------------------~~~~~~~~~~--~v~~~~~~p~~~~~~~  444 (457)
                      |.|++||+.++ .                    ....+.+|..  ++.+++|+|++...++
T Consensus       352 g~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  411 (425)
T 1r5m_A          352 GQVNVYDLKKL-NSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISV  411 (425)
T ss_dssp             SCEEEEECHHH-HC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEE
T ss_pred             CeEEEEECCCC-ccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEE
Confidence            99999999987 4                    6788899977  9999999999987765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-35  Score=277.69  Aligned_cols=294  Identities=15%  Similarity=0.183  Sum_probs=224.7

Q ss_pred             cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccc
Q 012721           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (457)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (457)
                      ..+..++.+|.            +.|++++|  +|++.+|++|+.|++|++||+.+++....+..+. ..+.+++|.+..
T Consensus        56 ~~~~~~l~gH~------------~~V~~~~~--sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~-~~v~~~~~s~~g  120 (380)
T 3iz6_a           56 LVCCRTLQGHS------------GKVYSLDW--TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC-PWVMECAFAPNG  120 (380)
T ss_dssp             CEEEEEECCCS------------SCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC-TTCCCCEECTTS
T ss_pred             eEEeecccccc------------cEEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCccceEEecCC-CCEEEEEECCCC
Confidence            34667899999            88999999  7899999999999999999999887766655432 346666666543


Q ss_pred             ccccccCCCCCceeccCCccccccceEEEeccCccc----cccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEE
Q 012721          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH----ARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLW  244 (457)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iw  244 (457)
                      ..++...              .++.+++|++.....    ....+.+ .+|...|.++.|.|+ +..|++| .|++|++|
T Consensus       121 ~~las~~--------------~d~~v~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~w  185 (380)
T 3iz6_a          121 QSVACGG--------------LDSACSIFNLSSQADRDGNMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLW  185 (380)
T ss_dssp             SEEEECC--------------SSSCCEEEECCCCSSCCCSSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEE
T ss_pred             CEEEEee--------------CCCcEEEEECCCCccccCCccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEE
Confidence            3332222              256899999875321    1223333 799999999999996 4568888 99999999


Q ss_pred             EcCCCcceeeeeecCCCcccCCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccce
Q 012721          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (457)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (457)
                      |++ .++.+..+...  ...+|...|.+++|++ ++ ++|++|+.|++|++||++.....                ...+
T Consensus       186 d~~-~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~-~~l~sgs~D~~v~~wd~~~~~~~----------------~~~~  245 (380)
T 3iz6_a          186 DVT-TGQRISIFGSE--FPSGHTADVLSLSINSLNA-NMFISGSCDTTVRLWDLRITSRA----------------VRTY  245 (380)
T ss_dssp             CTT-TCCEEEEECCC--SSSSCCSCEEEEEECSSSC-CEEEEEETTSCEEEEETTTTCCC----------------CEEE
T ss_pred             EcC-CCcEEEEeecc--cCCCCccCeEEEEeecCCC-CEEEEEECCCeEEEEECCCCCcc----------------eEEE
Confidence            999 55555543211  1367999999999988 55 99999999999999999853211                1124


Q ss_pred             eccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721          324 TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (457)
Q Consensus       324 ~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  402 (457)
                      .+|...|.+++|+|++++|+++++ ++|++||+++ ++.+..+..+.....        .....+++++|+|+|++|++|
T Consensus       246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~g  316 (380)
T 3iz6_a          246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAFSISGRLLFAG  316 (380)
T ss_dssp             CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEECSSSSEEEEE
T ss_pred             CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEEECCCCCEEEEE
Confidence            567889999999999999999875 9999999986 677776655432210        011123789999999999999


Q ss_pred             eCCCcEEEEecCCCCceeeEE----ecCCCcceeeeeccCCcceec
Q 012721          403 SYSNLLRIFSHGVGSAGGITV----EAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       403 ~~dg~i~iw~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +.||.|++||+.++ +....+    .+|.+.|.+++|+|++...++
T Consensus       317 ~~dg~i~vwd~~~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  361 (380)
T 3iz6_a          317 YSNGDCYVWDTLLA-EMVLNLGTLQNSHEGRISCLGLSSDGSALCT  361 (380)
T ss_dssp             CTTSCEEEEETTTC-CEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred             ECCCCEEEEECCCC-ceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence            99999999999988 455555    689999999999999998877

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=272.89  Aligned_cols=288  Identities=15%  Similarity=0.212  Sum_probs=216.4

Q ss_pred             ceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEE--eecCCCceeeeeeccc
Q 012721           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK--EMDHFPFVSSENTLLA  169 (457)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~  169 (457)
                      +++.++.+|..           ..|.+++|  +|++++|++++.|++|++|++.++......  .......|.+++|++.
T Consensus         6 ~~~~~~~~h~~-----------~~v~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~   72 (345)
T 3fm0_A            6 VLLGRVPAHPD-----------SRCWFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC   72 (345)
T ss_dssp             EEEEEECCSTT-----------SCEEEEEE--CTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT
T ss_pred             EEeeeecCCCC-----------CcEEEEEE--CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC
Confidence            46678888881           38999999  789999999999999999999887644322  2234556888888764


Q ss_pred             cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC
Q 012721          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (457)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~  248 (457)
                      ...++...              .++.+++|+.+... .+++..+ .+|...|.+++|+|++++|++| .|+.|++||++.
T Consensus        73 g~~l~s~s--------------~D~~v~iw~~~~~~-~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           73 GNYLASAS--------------FDATTCIWKKNQDD-FECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             SSEEEEEE--------------TTSCEEEEEECCC--EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             CCEEEEEE--------------CCCcEEEEEccCCC-eEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            33333322              25689999986432 2344555 7999999999999999999999 999999999984


Q ss_pred             CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  328 (457)
                      ... ...+    ..+.+|...|.+++|+|++ .+|++++.|+.|++||++.++..    ..           ..+.+|..
T Consensus       137 ~~~-~~~~----~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~----~~-----------~~~~~h~~  195 (345)
T 3fm0_A          137 EDE-YECV----SVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWV----CC-----------ATLEGHES  195 (345)
T ss_dssp             TSC-EEEE----EEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEE----EE-----------EEECCCSS
T ss_pred             CCC-eEEE----EEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEE----EE-----------EEecCCCC
Confidence            332 2111    1257899999999999999 99999999999999999876421    00           12456788


Q ss_pred             ceEEEEEccCCCeEEEEec-CcEEEEeccCCCCc--------------eeEeee-ccccccccccccCCCCccccceEEE
Q 012721          329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP--------------VATFKI-HEHLRPKLCDLYNNDSIFDKFECSV  392 (457)
Q Consensus       329 ~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~  392 (457)
                      .|++++|+|+|++|++++. ++|++||....+..              +..+.+ |...               |++++|
T Consensus       196 ~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~v~~  260 (345)
T 3fm0_A          196 TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT---------------IYDIAW  260 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC---------------EEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc---------------EEEEEE
Confidence            9999999999999999875 99999997532211              112222 3322               378999


Q ss_pred             cCCCcEEEEEeCCCcEEEEecCCCCce--------eeEEecCCCcceeeeeccCCc-ceec
Q 012721          393 SGDGLHFATGSYSNLLRIFSHGVGSAG--------GITVEAGKNENRKPILQAAPR-ARRS  444 (457)
Q Consensus       393 s~d~~~l~s~~~dg~i~iw~~~~~~~~--------~~~~~~~~~~v~~~~~~p~~~-~~~~  444 (457)
                      +|++..|++++.|+.|++|+...+...        .....+|...|++++|+|+++ ..++
T Consensus       261 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS  321 (345)
T 3fm0_A          261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS  321 (345)
T ss_dssp             CTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred             ecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence            999999999999999999998765211        122358999999999999986 4444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.5e-35  Score=291.32  Aligned_cols=348  Identities=12%  Similarity=0.094  Sum_probs=264.1

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|.+++|+|+|++||+++ ++.|+||++.++..                       ..+....+.+|.       
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------~~~~~~~~~~h~-------   63 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------KVPPVVQFTGHG-------   63 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------SSCSEEEECTTT-------
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------ccccceEEecCC-------
Confidence            45889999999999999999998 78999999987621                       012456788898       


Q ss_pred             cccccCc-EEEEEEEecC--CCCEEEEeeCCCeEEEEEeccc------ceeEEEeec-CCCceeeeeeccccccccccCC
Q 012721          109 SLEIEEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKEMD-HFPFVSSENTLLAEKNFMNEHN  178 (457)
Q Consensus       109 ~~~~~~~-V~~v~~~~s~--~~~~l~s~s~d~~i~vw~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  178 (457)
                           +. |.+++|  +|  ++++|++++.|+.|++||+.++      .......+. ....+.+++|.+....++....
T Consensus        64 -----~~~v~~~~~--sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  136 (615)
T 1pgu_A           64 -----SSVVTTVKF--SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE  136 (615)
T ss_dssp             -----TSCEEEEEE--CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             -----CceEEEEEE--CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEecc
Confidence                 88 999999  68  9999999999999999999765      333332222 4556888888876544443322


Q ss_pred             C--------------------------CCceeccCCc--c---ccccceEEEeccCccccccceeeccCCCC---CeeEE
Q 012721          179 P--------------------------PSFAHGYHLE--W---TENMATKIANVGNSVHARCQKVYPHAHDF---NINSI  224 (457)
Q Consensus       179 ~--------------------------~~~~~~~~~~--~---~~~~~i~~~~~~~~~~~~~~~~~~~~h~~---~v~~~  224 (457)
                      .                          ....+.+++.  +   ..++.+++||...   .+++..+ .+|..   .|.++
T Consensus       137 ~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~-~~~~~~~~~v~~~  212 (615)
T 1pgu_A          137 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP---FKFSASD-RTHHKQGSFVRDV  212 (615)
T ss_dssp             CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT---BEEEEEE-CSSSCTTCCEEEE
T ss_pred             CCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---cceeeee-cccCCCCceEEEE
Confidence            1                          1233444543  2   2345899999764   3445555 77888   99999


Q ss_pred             EeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc---CCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721          225 SNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD---DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       225 ~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~  299 (457)
                      +|+|+ +++|+++ .|+.|++||++ .++....+      ..   .|...|.+++|+ ++ .+|++++.||.|++||+++
T Consensus       213 ~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~------~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          213 EFSPDSGEFVITVGSDRKISCFDGK-SGEFLKYI------EDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETT-TCCEEEEC------CBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTT
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECC-CCCEeEEe------cccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCC
Confidence            99999 9999999 99999999998 55555442      14   789999999999 88 9999999999999999986


Q ss_pred             Ceeeccc-----------------------------------------cccccccc------------------------
Q 012721          300 SALCDHS-----------------------------------------ARILRDAA------------------------  314 (457)
Q Consensus       300 ~~~~~~~-----------------------------------------~~~~~~~~------------------------  314 (457)
                      ++.....                                         ...+..|.                        
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~  363 (615)
T 1pgu_A          284 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWS  363 (615)
T ss_dssp             TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETT
T ss_pred             CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEE
Confidence            5432100                                         00000000                        


Q ss_pred             --------------------------------------c---------------------------------cc------
Q 012721          315 --------------------------------------E---------------------------------SH------  317 (457)
Q Consensus       315 --------------------------------------~---------------------------------~~------  317 (457)
                                                            .                                 ..      
T Consensus       364 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (615)
T 1pgu_A          364 SSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV  443 (615)
T ss_dssp             TTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             chhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec
Confidence                                                  0                                 00      


Q ss_pred             ----------------------Cc-----------c--cceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCc
Q 012721          318 ----------------------GS-----------K--SFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP  361 (457)
Q Consensus       318 ----------------------~~-----------~--~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~  361 (457)
                                            ..           .  ..+.+|...|.+++|+|++++|++++. +.|++||+.. ++.
T Consensus       444 ~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~  522 (615)
T 1pgu_A          444 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REV  522 (615)
T ss_dssp             ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEE
T ss_pred             ccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-Ccc
Confidence                                  00           0  234568889999999999999999875 9999999985 777


Q ss_pred             eeEeee-ccccccccccccCCCCccccceEEEcC----------CCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcc
Q 012721          362 VATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSG----------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  430 (457)
Q Consensus       362 ~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~----------d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v  430 (457)
                      +..+.+ |...+               ++++|+|          ++++|++++.||.|++||+.++.+....+.+|..+|
T Consensus       523 ~~~~~~~h~~~v---------------~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v  587 (615)
T 1pgu_A          523 KTSRWAFRTSKI---------------NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV  587 (615)
T ss_dssp             EECCSCCCSSCE---------------EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred             eeEeecCCCCce---------------eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccce
Confidence            777776 76654               7999999          999999999999999999999866788899999999


Q ss_pred             eeeeeccCCcceec
Q 012721          431 RKPILQAAPRARRS  444 (457)
Q Consensus       431 ~~~~~~p~~~~~~~  444 (457)
                      .+++|+|+++ ..+
T Consensus       588 ~~l~~s~~~~-l~s  600 (615)
T 1pgu_A          588 NNLLWETPST-LVS  600 (615)
T ss_dssp             EEEEEEETTE-EEE
T ss_pred             EEEEEcCCCC-eEE
Confidence            9999999999 555

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-36  Score=307.08  Aligned_cols=212  Identities=14%  Similarity=0.116  Sum_probs=159.5

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|++++||+|+.||+|+||+..+.+.                           ... ..|.       
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~---------------------------~~~-~~~~-------   58 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV---------------------------VIK-LEDR-------   58 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE---------------------------EEE-CSSC-------
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE---------------------------EEE-cCCC-------
Confidence            45899999999999999999999999999999765542                           122 2355       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           .+|.+++|  ++ +++|++++.|++|++||+.+++....+.  ....|.+++|++....++...           
T Consensus        59 -----~~V~~l~f--sp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs-----------  117 (902)
T 2oaj_A           59 -----SAIKEMRF--VK-GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGL-----------  117 (902)
T ss_dssp             -----CCEEEEEE--ET-TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEE-----------
T ss_pred             -----CCEEEEEE--cC-CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEc-----------
Confidence                 78999999  46 7799999999999999999987766554  345688888876444333322           


Q ss_pred             ccccccceEEEeccCccccccce-------eeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecC
Q 012721          189 EWTENMATKIANVGNSVHARCQK-------VYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  259 (457)
                         .++.+++||++.........       ....+|...|.+++|+|+ +..+++| .|+.| +||++ .++....+...
T Consensus       118 ---~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~~~~~  192 (902)
T 2oaj_A          118 ---QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQSFIYE  192 (902)
T ss_dssp             ---TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEEECCC
T ss_pred             ---CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEEEecc
Confidence               26689999997643210000       122679999999999996 4688888 99999 99999 55555554211


Q ss_pred             C-----------CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCee
Q 012721          260 P-----------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (457)
Q Consensus       260 ~-----------~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~  302 (457)
                      .           .....|...|.+++|+|+| .+|++++.||.|++||+++++.
T Consensus       193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             BCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCE
T ss_pred             cCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcE
Confidence            0           0123456789999999999 9999999999999999977553

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-35  Score=266.94  Aligned_cols=235  Identities=15%  Similarity=0.168  Sum_probs=196.7

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (457)
                      ...+|.+|.            +.|.+++|  +|++.+|++++.|++|++||+.++.....+                   
T Consensus         5 ~~~~~~~h~------------~~V~~~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-------------------   51 (304)
T 2ynn_A            5 IKKTFSNRS------------DRVKGIDF--HPTEPWVLTTLYSGRVELWNYETQVEVRSI-------------------   51 (304)
T ss_dssp             CEEEEEEEC------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEE-------------------
T ss_pred             eEEeecCCC------------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCceeEEe-------------------
Confidence            456788888            88999999  789999999999999999999887654332                   


Q ss_pred             ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc
Q 012721          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  251 (457)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~  251 (457)
                                                                ..|..+|.+++|+|++++|++| .|+.|++||++ .++
T Consensus        52 ------------------------------------------~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~-~~~   88 (304)
T 2ynn_A           52 ------------------------------------------QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TGE   88 (304)
T ss_dssp             ------------------------------------------ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-TCC
T ss_pred             ------------------------------------------eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC-CCc
Confidence                                                      4678899999999999999999 99999999998 555


Q ss_pred             eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  331 (457)
                      ....       +.+|...|.+++|+|++ .+|++|+.||+|++||++++...                ...+.+|...|.
T Consensus        89 ~~~~-------~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~----------------~~~~~~h~~~v~  144 (304)
T 2ynn_A           89 KVVD-------FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL----------------EQTFEGHEHFVM  144 (304)
T ss_dssp             EEEE-------EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE----------------EEEECCCCSCEE
T ss_pred             EEEE-------EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch----------------hhhhcccCCcEE
Confidence            5544       67899999999999999 99999999999999999875321                012456788999


Q ss_pred             EEEEcc-CCCeEEEEec-CcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcC--CCcEEEEEeCCC
Q 012721          332 DIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSN  406 (457)
Q Consensus       332 ~~~~s~-~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~~dg  406 (457)
                      +++|+| ++.+|++|+. +.|++||++. ..+...+. .|...+               ..+.|+|  ++.+|++|+.|+
T Consensus       145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~l~s~s~D~  208 (304)
T 2ynn_A          145 CVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGV---------------NYVDYYPLPDKPYMITASDDL  208 (304)
T ss_dssp             EEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTCE---------------EEEEECCSTTCCEEEEEETTS
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCcE---------------EEEEEEEcCCCCEEEEEcCCC
Confidence            999999 6788998874 9999999975 44444443 333332               4677776  788999999999


Q ss_pred             cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       407 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +|++||++++ .....+.+|...|..++|+|+++..++
T Consensus       209 ~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s  245 (304)
T 2ynn_A          209 TIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIIS  245 (304)
T ss_dssp             EEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             eEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEE
Confidence            9999999998 788999999999999999999987776

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=270.59  Aligned_cols=260  Identities=14%  Similarity=0.214  Sum_probs=187.7

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      |.+.|++++|+|++++||+|+.|++|+||++......                    ....+.+..+.+|.         
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~--------------------~~~~~~~~~~~~h~---------  107 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR--------------------TFEMDLLAIIEGHE---------  107 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------------------------CCCEEEEEEC------------
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--------------------cccceeEEEEcCCC---------
Confidence            8999999999999999999999999999998643210                    00223566788998         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         +.|.+++|  +|++++|++++.|++|++||+......                                        
T Consensus       108 ---~~V~~v~~--sp~g~~las~s~D~~v~iwd~~~~~~~----------------------------------------  142 (330)
T 2hes_X          108 ---NEVKGVAW--SNDGYYLATCSRDKSVWIWETDESGEE----------------------------------------  142 (330)
T ss_dssp             ----CEEEEEE--CTTSCEEEEEETTSCEEEEECCTTCCC----------------------------------------
T ss_pred             ---CcEEEEEE--CCCCCEEEEEeCCCEEEEEeccCCCCC----------------------------------------
Confidence               88999999  789999999999999999998532110                                        


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc-ceeeeeecCCCcccCCCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~  268 (457)
                                      .+++..+ .+|...|.+++|+|++.+|++| .|+.|++||..... +++..       +.+|..
T Consensus       143 ----------------~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~-------~~~h~~  198 (330)
T 2hes_X          143 ----------------YECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV-------LNGHEG  198 (330)
T ss_dssp             ----------------CEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE-------ECCCSS
T ss_pred             ----------------eEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE-------ccCCCC
Confidence                            0111122 6899999999999999999999 99999999987321 33333       678999


Q ss_pred             ceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee-ccccceEEEEEccCCCeEEEE
Q 012721          269 VITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       269 ~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      .|.+++|+|+  + .+|++++.|++|++||++.+.....  ..+.       ....+. .|...|.+++|++++ +|+++
T Consensus       199 ~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~--~~~~-------~~~~~~~~h~~~v~~v~~s~~~-~l~s~  267 (330)
T 2hes_X          199 TVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQ--QEWV-------CEAILPDVHKRQVYNVAWGFNG-LIASV  267 (330)
T ss_dssp             CEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSC--EEEE-------EEEECCSCCSSCEEEEEECTTS-CEEEE
T ss_pred             cEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCcccc--ceeE-------EeeecccccccceEEEEEcCCC-EEEEE
Confidence            9999999998  5 7899999999999999976421100  0000       001122 377899999999766 67766


Q ss_pred             e-cCcEEEEeccCCCC--ceeE-eeeccc-cccccccccCCCCccccceEEEcC--CCcEEEEEeCCCcEEEEecCC
Q 012721          346 D-YMNLKLWDIRMDST--PVAT-FKIHEH-LRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       346 ~-~~~i~~wd~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      + |+.|++||... +.  .... ..+|.. .+               .+++|+|  ++++|++|+.||+|+||++++
T Consensus       268 ~~dg~v~iw~~~~-~~~~~~~~~~~~h~~~~v---------------~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          268 GADGVLAVYEEVD-GEWKVFAKRALCHGVYEI---------------NVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ETTSCEEEEEEET-TEEEEEEEESCTTTTSCE---------------EEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             eCCCEEEEEEcCC-CceEEEeccccccccceE---------------EEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            5 59999999874 32  2222 234543 32               6899999  789999999999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-36  Score=281.63  Aligned_cols=254  Identities=12%  Similarity=0.098  Sum_probs=186.3

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      |.++|++++|+|++++||+|+.||.|+||++.++..                         +.+..+.+|.         
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-------------------------~~~~~~~~h~---------   55 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-------------------------KHARTFSDHD---------   55 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-------------------------EECCCBCCCS---------
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-------------------------EEEEEEecCC---------
Confidence            567999999999999999999999999999987631                         1456778888         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccc-eeEEEe-ecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKE-MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                         ..|.+++|  ++++++|++++.|+.|++||+.++. ...... ......+.+++|.+....++...           
T Consensus        56 ---~~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------  119 (377)
T 3dwl_C           56 ---KIVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS-----------  119 (377)
T ss_dssp             ---SCEEEEEE--CTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-----------
T ss_pred             ---ceEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe-----------
Confidence               88999999  7889999999999999999999876 222222 23445677888876433333222           


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc--------------ee
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--------------CF  253 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--------------~~  253 (457)
                         .++.+++|+++......+.+.+...|...|.+++|+|++++|+++ .|+.|++||++....              ..
T Consensus       120 ---~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  196 (377)
T 3dwl_C          120 ---GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN  196 (377)
T ss_dssp             ---SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEE
T ss_pred             ---cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchh
Confidence               256799999987654445566623399999999999999999999 999999999862110              01


Q ss_pred             eeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEE
Q 012721          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (457)
Q Consensus       254 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  333 (457)
                      ...    ..+ +|...|.+++|+|++ ++|++++.||.|++||+++++....             ....+.+|...|.++
T Consensus       197 ~~~----~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~v~~~  257 (377)
T 3dwl_C          197 TVC----AEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPR-------------ALITVKLSQLPLRSL  257 (377)
T ss_dssp             EEE----ECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEE-------------ECCCEECSSSCEEEE
T ss_pred             hhh----hcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcce-------------eeEeecCCCCceEEE
Confidence            110    124 799999999999999 9999999999999999998753100             012245677899999


Q ss_pred             EEccCCCeEEEEecCcEEEEecc
Q 012721          334 KFANDGQHLLSRDYMNLKLWDIR  356 (457)
Q Consensus       334 ~~s~~g~~l~s~~~~~i~~wd~~  356 (457)
                      +|+|++++|++++++.+.+|+..
T Consensus       258 ~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          258 LWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             EEEETTEEEEEESSSSEEEECCC
T ss_pred             EEcCCCCEEEEEcCCcEEEEEeC
Confidence            99999999999988666688775

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-36  Score=289.34  Aligned_cols=261  Identities=12%  Similarity=0.066  Sum_probs=192.6

Q ss_pred             ccccCCceEEEEECCCC---------CEEEEE-------------------eCCCeEEEEEecCCccCCCcccchhhhhh
Q 012721           28 ELQDVDIVSAIEFDKTG---------DYLAVG-------------------DRGGRVILFETVGGKNTPNQHISRSELEK   79 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~---------~~latg-------------------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   79 (457)
                      .+.+.+.|++|+|+|++         ++||+|                   +.|++|+||++.+++..            
T Consensus       129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------  196 (524)
T 2j04_B          129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------  196 (524)
T ss_dssp             EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC------------
T ss_pred             EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC------------
Confidence            34467899999999986         677764                   47789999999876531            


Q ss_pred             cccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEec----CCCCEEEEeeCCCeEEEEEecccceeEEEee
Q 012721           80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA----PNGSMFILSTNDKTIKLWKVRDQKVKKIKEM  155 (457)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s----~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~  155 (457)
                                 ......+.+|.            +.|.+++|+|.    +++.+||+++.|++|++||+.++........
T Consensus       197 -----------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~  253 (524)
T 2j04_B          197 -----------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK  253 (524)
T ss_dssp             -----------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred             -----------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence                       11223456666            78999999653    2367999999999999999986642100000


Q ss_pred             cCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE
Q 012721          156 DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS  235 (457)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~  235 (457)
                      .                                                 ...+...+ .+|...|++++|++++ .|++
T Consensus       254 ~-------------------------------------------------~~~p~~~l-~~h~~~v~sv~~s~~~-~las  282 (524)
T 2j04_B          254 M-------------------------------------------------CEKPSLTL-SLADSLITTFDFLSPT-TVVC  282 (524)
T ss_dssp             C-------------------------------------------------CCSCSEEE-CCTTTCEEEEEESSSS-EEEE
T ss_pred             e-------------------------------------------------ecCceEEE-EcCCCCEEEEEecCCC-eEEE
Confidence            0                                                 00111222 6889999999999864 7888


Q ss_pred             e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE--EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccc
Q 012721          236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (457)
Q Consensus       236 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v--~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~  312 (457)
                      | .||+|++||++........       +.+|...|.++  +|+|++..+|++++.|++|+|||+++++..    ..+. 
T Consensus       283 gs~DgtV~lWD~~~~~~~~~~-------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~----~~~~-  350 (524)
T 2j04_B          283 GFKNGFVAEFDLTDPEVPSFY-------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT----KTTV-  350 (524)
T ss_dssp             EETTSEEEEEETTBCSSCSEE-------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH----CEEE-
T ss_pred             EeCCCEEEEEECCCCCCceEE-------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc----cccc-
Confidence            8 9999999999843333222       57899999999  466764378999999999999999886432    2222 


Q ss_pred             cccccCcccceeccc--cceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccce
Q 012721          313 AAESHGSKSFFTEII--ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  389 (457)
Q Consensus       313 ~~~~~~~~~~~~~h~--~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  389 (457)
                                  +|.  ..|.+++|+|+++.++++++ ++|++||++. +.++..+.+|...+               ++
T Consensus       351 ------------~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V---------------~s  402 (524)
T 2j04_B          351 ------------SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTI---------------TA  402 (524)
T ss_dssp             ------------EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCE---------------EE
T ss_pred             ------------cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCce---------------EE
Confidence                        222  24789999999999998765 9999999986 67777888898865               79


Q ss_pred             EEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          390 CSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       390 ~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      ++|+|++++|++|+.||+|++||+.
T Consensus       403 va~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          403 IGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             EECCSSCCBCEEEETTTEEECCBSC
T ss_pred             EEeCCCCCeEEEEECCCEEEEEech
Confidence            9999999999999999999999853

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-34  Score=274.11  Aligned_cols=280  Identities=17%  Similarity=0.193  Sum_probs=221.1

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      |.+.|++++|+|++++||+|+.||.|++|+ .+++                           .+..+.+|.         
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~---------------------------~~~~~~~~~---------  149 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGA---------------------------LLNVLNFHR---------  149 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSC---------------------------EEEEECCCC---------
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC---------------------------eeeeccCCC---------
Confidence            678999999999999999999999999999 3222                           456778888         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCc--------------eeeeeecccccccccc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF--------------VSSENTLLAEKNFMNE  176 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~  176 (457)
                         ..|.+++|  ++++.+|++++.|+.|++||+.+++............              +.++.|.+. +.++..
T Consensus       150 ---~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  223 (425)
T 1r5m_A          150 ---APIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIP  223 (425)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET-TEEEEE
T ss_pred             ---ccEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEE
Confidence               88999999  7899999999999999999999887766554332211              333333321 111111


Q ss_pred             CCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeee
Q 012721          177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI  255 (457)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  255 (457)
                                    ..++.+++|++...   +.+..+ ..|...|.+++|+|++++|+++ .|+.|++||++ .++....
T Consensus       224 --------------~~~g~i~~~d~~~~---~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~  284 (425)
T 1r5m_A          224 --------------GPKGAIFVYQITEK---TPTGKL-IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG-NGNSQNC  284 (425)
T ss_dssp             --------------CGGGCEEEEETTCS---SCSEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS-SBSCSEE
T ss_pred             --------------cCCCeEEEEEcCCC---ceeeee-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-CCccceE
Confidence                          23558999999753   444444 6899999999999999999999 99999999998 4544443


Q ss_pred             eecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (457)
Q Consensus       256 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  335 (457)
                             +.+|...|.+++|+|++  ++++++.||.|++||+++++..    ..             +..|...|.+++|
T Consensus       285 -------~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~----~~-------------~~~~~~~i~~~~~  338 (425)
T 1r5m_A          285 -------FYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLL----AL-------------SIVDGVPIFAGRI  338 (425)
T ss_dssp             -------ECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEE----EE-------------EECTTCCEEEEEE
T ss_pred             -------ecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEe----Ee-------------cccCCccEEEEEE
Confidence                   56788999999999987  8999999999999999887543    22             2345678999999


Q ss_pred             ccCCCeEEEEec-CcEEEEeccCCCC--------------------ceeEeeeccc--cccccccccCCCCccccceEEE
Q 012721          336 ANDGQHLLSRDY-MNLKLWDIRMDST--------------------PVATFKIHEH--LRPKLCDLYNNDSIFDKFECSV  392 (457)
Q Consensus       336 s~~g~~l~s~~~-~~i~~wd~~~~~~--------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~  392 (457)
                      +|++++|++++. +.|++||++. .+                    ++..+..|..  .+               ++++|
T Consensus       339 s~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~  402 (425)
T 1r5m_A          339 SQDGQKYAVAFMDGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI---------------FDLSW  402 (425)
T ss_dssp             CTTSSEEEEEETTSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCCCE---------------EEEEE
T ss_pred             cCCCCEEEEEECCCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCCce---------------EEEEc
Confidence            999999999875 9999999975 44                    5667776644  33               69999


Q ss_pred             cCCCcEEEEEeCCCcEEEEecC
Q 012721          393 SGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       393 s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      +|++++|++++.||.|++|+++
T Consensus       403 s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          403 NCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CTTSSEEEEEESSSCCEEEECC
T ss_pred             cCCCceEEEEecCceEEEEeec
Confidence            9999999999999999999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-35  Score=271.47  Aligned_cols=258  Identities=16%  Similarity=0.235  Sum_probs=204.1

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ...|.+.|++++|+|++++||+|+.||.|+||++.....                         +.+..+.+|.      
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------~~~~~~~~h~------   55 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------------KLIDTLTGHE------   55 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCS------
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-------------------------eeeeEecCCC------
Confidence            345999999999999999999999999999999974432                         2566788898      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ..|.+++|.+..++.+|++++.|+.|++||+.+++......                                 
T Consensus        56 ------~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------------------------------   96 (379)
T 3jrp_A           56 ------GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV---------------------------------   96 (379)
T ss_dssp             ------SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE---------------------------------
T ss_pred             ------CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee---------------------------------
Confidence                  88999999433338999999999999999999876332211                                 


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                                ...|...|.+++|+|+  +.+|+++ .|+.|++||++........      .+.
T Consensus        97 --------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~  144 (379)
T 3jrp_A           97 --------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IID  144 (379)
T ss_dssp             --------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEE
T ss_pred             --------------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------Eec
Confidence                                      1568889999999999  9999999 9999999999843222211      256


Q ss_pred             CCCCceEEEEEec-------------CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721          265 DLTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (457)
Q Consensus       265 ~~~~~i~~v~~~p-------------~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  331 (457)
                      +|...|.+++|+|             ++ .+|++++.||.|++||++++.....   .          ...+.+|...|.
T Consensus       145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~---~----------~~~~~~h~~~v~  210 (379)
T 3jrp_A          145 AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYV---L----------ESTLEGHSDWVR  210 (379)
T ss_dssp             CCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEE---E----------EEEECCCSSCEE
T ss_pred             CCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCccee---e----------EEEEecccCcEe
Confidence            7899999999999             57 9999999999999999987542211   1          112456788999


Q ss_pred             EEEEccC---CCeEEEEec-CcEEEEeccCCCCce--eEee--eccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721          332 DIKFAND---GQHLLSRDY-MNLKLWDIRMDSTPV--ATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       332 ~~~~s~~---g~~l~s~~~-~~i~~wd~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                      +++|+|+   +++|++++. +.|++||++......  ..+.  .|...               +++++|+|++++|++++
T Consensus       211 ~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSG  275 (379)
T ss_dssp             EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEE
T ss_pred             EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc---------------EEEEEEcCCCCEEEEec
Confidence            9999999   899998874 999999998632221  1111  13332               26899999999999999


Q ss_pred             CCCcEEEEecCCC
Q 012721          404 YSNLLRIFSHGVG  416 (457)
Q Consensus       404 ~dg~i~iw~~~~~  416 (457)
                      .||.|++|++.++
T Consensus       276 ~dg~i~iw~~~~~  288 (379)
T 3jrp_A          276 GDNKVTLWKENLE  288 (379)
T ss_dssp             SSSSEEEEEEEET
T ss_pred             CCCcEEEEeCCCC
Confidence            9999999999865

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.1e-34  Score=298.21  Aligned_cols=270  Identities=18%  Similarity=0.193  Sum_probs=232.5

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|.+++|+|++++||+|+.||.|+|||+.+++                           .+..+.+|.       
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~---------------------------~~~~~~~~~-------   55 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV---------------------------EVRSIQVTE-------   55 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS-------
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc---------------------------eEEEEecCC-------
Confidence            3499999999999999999999999999999998765                           456778888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           .+|.+++|  ++++++|++++.|+.|++||+.+++.....                                   
T Consensus        56 -----~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-----------------------------------   93 (814)
T 3mkq_A           56 -----TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVVDF-----------------------------------   93 (814)
T ss_dssp             -----SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------
T ss_pred             -----CcEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence                 88999999  689999999999999999999887654332                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                .+|...|.+++|+|++++|+++ .|+.|++||++........       +.+|.
T Consensus        94 --------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-------~~~~~  140 (814)
T 3mkq_A           94 --------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHE  140 (814)
T ss_dssp             --------------------------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-------EECCS
T ss_pred             --------------------------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-------EcCCC
Confidence                                      5688899999999999999999 9999999999844344443       57799


Q ss_pred             CceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc--CCCeEEE
Q 012721          268 EVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLS  344 (457)
Q Consensus       268 ~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s  344 (457)
                      ..|.+++|+| ++ ..|++++.||.|++||+.++...    ..+.            ..|...+.+++|+|  ++.+|++
T Consensus       141 ~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~------------~~~~~~v~~~~~~~~~~~~~l~~  203 (814)
T 3mkq_A          141 HFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPN----FTLT------------TGQERGVNYVDYYPLPDKPYMIT  203 (814)
T ss_dssp             SCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSCS----EEEE------------CCCTTCCCEEEECCSTTCCEEEE
T ss_pred             CcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcce----eEEe------------cCCCCCEEEEEEEECCCCCEEEE
Confidence            9999999999 66 89999999999999999876422    1111            12336799999999  9999999


Q ss_pred             Eec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721          345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  423 (457)
Q Consensus       345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~  423 (457)
                      ++. +.|++||++. ++.+..+.+|...+               .+++|+|++.+|++++.||.|++||+.++ .....+
T Consensus       204 ~~~dg~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~  266 (814)
T 3mkq_A          204 ASDDLTIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL  266 (814)
T ss_dssp             ECTTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEE
T ss_pred             EeCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEe
Confidence            875 9999999986 77888888887654               68999999999999999999999999998 778889


Q ss_pred             ecCCCcceeeeeccCCcc
Q 012721          424 EAGKNENRKPILQAAPRA  441 (457)
Q Consensus       424 ~~~~~~v~~~~~~p~~~~  441 (457)
                      ..|..++.+++|+|++..
T Consensus       267 ~~~~~~v~~~~~~~~~~~  284 (814)
T 3mkq_A          267 NVGLERSWCIATHPTGRK  284 (814)
T ss_dssp             CCSSSSEEEEEECTTCGG
T ss_pred             ecCCCcEEEEEEccCCCc
Confidence            999999999999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.3e-35  Score=269.73  Aligned_cols=275  Identities=13%  Similarity=0.157  Sum_probs=213.7

Q ss_pred             ccCCceEEEEECCCCC-EEEEEeC---CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           30 QDVDIVSAIEFDKTGD-YLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~-~latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      .|.+.|.+++|+|++. ++++|+.   ||.|+||++.+++..                          .....+|.    
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~----   65 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------------------LLREIEKA----   65 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------------------EEEEEEES----
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--------------------------ceeeeccc----
Confidence            3899999999999995 4556665   899999999877631                          11222565    


Q ss_pred             ccccccccCcEEEEEEEecCC---CCEEEEeeCCCeEEEEEecccc-eeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721          106 YLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~---~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (457)
                              ..|.+++|  +++   +.+|++++.|+.|++||+.+++ ....                             
T Consensus        66 --------~~v~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------------------------  106 (357)
T 3i2n_A           66 --------KPIKCGTF--GATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS-----------------------------  106 (357)
T ss_dssp             --------SCEEEEEC--TTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE-----------------------------
T ss_pred             --------CcEEEEEE--cCCCCCCceEEEecCCCeEEEEeCCCCCccEEE-----------------------------
Confidence                    78999999  566   6899999999999999998765 2221                             


Q ss_pred             ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEE------eCCCCCEEEEe-CCCeEEEEEcCCCcceee
Q 012721          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSIS------NNSDCETFVSA-DDLRINLWNLEISDQCFN  254 (457)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  254 (457)
                                                     + .+|...|.+++      |+|++++|+++ .|+.|++||++.......
T Consensus       107 -------------------------------~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~  154 (357)
T 3i2n_A          107 -------------------------------V-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA  154 (357)
T ss_dssp             -------------------------------E-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred             -------------------------------E-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence                                           1 57888999994      57899999999 999999999994443444


Q ss_pred             eeecCCCcccCCCCceEEEE----EecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccce
Q 012721          255 IVDMKPSNMDDLTEVITSAE----FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (457)
Q Consensus       255 ~~~~~~~~~~~~~~~i~~v~----~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  330 (457)
                      .+...   ...+...+.+++    |+|++ .+|++++.||.|++||+++++..    .              ...|...|
T Consensus       155 ~~~~~---~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~--------------~~~~~~~v  212 (357)
T 3i2n_A          155 NMEPV---QGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR----W--------------ETNIKNGV  212 (357)
T ss_dssp             EECCC---TTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----E--------------EEECSSCE
T ss_pred             ecccc---CCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----e--------------ecCCCCce
Confidence            43111   111234788888    67888 99999999999999999987532    1              13356789


Q ss_pred             EEEEEcc---CCCeEEEEec-CcEEEEeccCCCCceeEee-----eccccccccccccCCCCccccceEEEcCCCc-EEE
Q 012721          331 SDIKFAN---DGQHLLSRDY-MNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFA  400 (457)
Q Consensus       331 ~~~~~s~---~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~  400 (457)
                      .+++|+|   ++.+|++++. +.|++||++. ++....+.     +|...+               ++++|+|++. +|+
T Consensus       213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~  276 (357)
T 3i2n_A          213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTV---------------WQVRHLPQNRELFL  276 (357)
T ss_dssp             EEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCE---------------EEEEEETTEEEEEE
T ss_pred             EEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCE---------------EEEEECCCCCcEEE
Confidence            9999999   8999998875 9999999975 45544443     666554               6899999998 899


Q ss_pred             EEeCCCcEEEEecCCCC------------------ceeeEEecCCCcceeeeeccCCccee
Q 012721          401 TGSYSNLLRIFSHGVGS------------------AGGITVEAGKNENRKPILQAAPRARR  443 (457)
Q Consensus       401 s~~~dg~i~iw~~~~~~------------------~~~~~~~~~~~~v~~~~~~p~~~~~~  443 (457)
                      +++.||.|++||+.++.                  .....+.+|..+|.+++|+|+++..+
T Consensus       277 ~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  337 (357)
T 3i2n_A          277 TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC  337 (357)
T ss_dssp             EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred             EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence            99999999999998753                  24667889999999999999998876

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-34  Score=275.59  Aligned_cols=303  Identities=13%  Similarity=0.141  Sum_probs=221.7

Q ss_pred             cccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..|.+.|++++|+| ++++||+|+.||+|+|||+.+.+..                     ...+....+ +|.      
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------~~~~~~~~~-~h~------  111 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG---------------------EVYSSSLTY-DCS------  111 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------CCCSCSEEE-ECS------
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC---------------------cccceeeec-cCC------
Confidence            34889999999999 9999999999999999998762210                     000111122 366      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEec---ccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                            ..|.+++|  ++++.+|++++.|+.|++||+.   .++........   .+..+.+.+                
T Consensus       112 ------~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~i~~~~~~~----------------  164 (437)
T 3gre_A          112 ------STVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---CIRKINLKN----------------  164 (437)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE---EEEEEEGGG----------------
T ss_pred             ------CCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc---eeEEEEccC----------------
Confidence                  88999999  6889999999999999999995   44443332211   111111110                


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEE--eCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                                                    .++...+.++.  +++++.+|+++ .|+.|++||++ .++....      
T Consensus       165 ------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~------  207 (437)
T 3gre_A          165 ------------------------------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-TLERLQI------  207 (437)
T ss_dssp             ------------------------------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-TCCEEEE------
T ss_pred             ------------------------------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeEE------
Confidence                                          11566788887  67899999999 99999999998 5555554      


Q ss_pred             cccC--CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc---
Q 012721          262 NMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA---  336 (457)
Q Consensus       262 ~~~~--~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---  336 (457)
                       +.+  |...|++++|+|++ .+|++|+.||.|++||+++++..    ..+.            ..|...|.+++|+   
T Consensus       208 -~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~------------~~~~~~v~~~~~~~~~  269 (437)
T 3gre_A          208 -IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI----RSWS------------FGDHAPITHVEVCQFY  269 (437)
T ss_dssp             -EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEEB------------CTTCEEEEEEEECTTT
T ss_pred             -EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE----EEEe------------cCCCCceEEEEecccc
Confidence             344  78999999999998 99999999999999999987543    2221            1345689999665   


Q ss_pred             -cCCCeEEEEec-CcEEEEeccCCCCceeEeeecccccccccc-----------ccCCCCccccceEEEcCCCcEEEEEe
Q 012721          337 -NDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD-----------LYNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       337 -~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                       |++++|++++. +.|++||++. ++.+..+.+|...+....-           +........|++++|+ ++++|++|+
T Consensus       270 s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~  347 (437)
T 3gre_A          270 GKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE  347 (437)
T ss_dssp             CTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred             CCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence             56889999875 9999999986 7888888877654432110           0001122346899999 889999999


Q ss_pred             CCCcEEEEecCCCCceeeEEec-------------------------------------CCCcceeeeeccC--Ccceec
Q 012721          404 YSNLLRIFSHGVGSAGGITVEA-------------------------------------GKNENRKPILQAA--PRARRS  444 (457)
Q Consensus       404 ~dg~i~iw~~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~~p~--~~~~~~  444 (457)
                      .|+.|++||+.++ +....+.+                                     |...|++++|+++  ++...+
T Consensus       348 ~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s  426 (437)
T 3gre_A          348 ATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA  426 (437)
T ss_dssp             GGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEE
T ss_pred             CCCeEEEEECCCc-ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEE
Confidence            9999999999998 45555554                                     8899999999988  444444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=8.1e-35  Score=267.90  Aligned_cols=279  Identities=10%  Similarity=0.023  Sum_probs=222.1

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|++++|+|++++|++|+.||.|+||++.++...                        .....+.+|.        
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~------------------------~~~~~~~~~~--------   56 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN------------------------VDLLQSLRYK--------   56 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE------------------------EEEEEEEECS--------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc------------------------ccceeeeecC--------
Confidence            58999999999999999999999999999999876520                        1223455777        


Q ss_pred             ccccCcEEEEEEEecCCCC-EEEEeeCCCeEEEEEe-cccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          110 LEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                          ..|.+++|  ++++. +|++++.|+.|++|++ .+++....                                   
T Consensus        57 ----~~v~~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-----------------------------------   95 (342)
T 1yfq_A           57 ----HPLLCCNF--IDNTDLQIYVGTVQGEILKVDLIGSPSFQAL-----------------------------------   95 (342)
T ss_dssp             ----SCEEEEEE--EESSSEEEEEEETTSCEEEECSSSSSSEEEC-----------------------------------
T ss_pred             ----CceEEEEE--CCCCCcEEEEEcCCCeEEEEEeccCCceEec-----------------------------------
Confidence                88999999  56899 9999999999999999 77654211                                   


Q ss_pred             CccccccceEEEeccCccccccceeeccC--CCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC--------cceeeee
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------DQCFNIV  256 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~--------~~~~~~~  256 (457)
                                                 .+  |...|.+++|+| +.+|+++ .|+.|++||++..        .+...  
T Consensus        96 ---------------------------~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--  145 (342)
T 1yfq_A           96 ---------------------------TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--  145 (342)
T ss_dssp             ---------------------------BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--
T ss_pred             ---------------------------cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--
Confidence                                       45  889999999999 9999999 9999999999831        22222  


Q ss_pred             ecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC-CeeeccccccccccccccCcccceeccccceEEEEE
Q 012721          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (457)
Q Consensus       257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  335 (457)
                           .+. |...+.+++|+|++   +++++.|+.|++||+++ +....   ..            ....|...+.+++|
T Consensus       146 -----~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~---~~------------~~~~~~~~i~~i~~  201 (342)
T 1yfq_A          146 -----NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG---TI------------EESGLKYQIRDVAL  201 (342)
T ss_dssp             -----SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC---EE------------EECSCSSCEEEEEE
T ss_pred             -----EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc---ee------------eecCCCCceeEEEE
Confidence                 133 88899999999875   99999999999999987 43210   00            11235678999999


Q ss_pred             cc-CCCeEEEEec-CcEEEEeccCC-----CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721          336 AN-DGQHLLSRDY-MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  408 (457)
Q Consensus       336 s~-~g~~l~s~~~-~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i  408 (457)
                      +| +++++++++. |.|++|+++..     .+....+..|.....      ..+....+.+++|+|++++|++++.||.|
T Consensus       202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  275 (342)
T 1yfq_A          202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSPRHKFLYTAGSDGII  275 (342)
T ss_dssp             CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred             CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcCCCCEEEEecCCceE
Confidence            99 9999999875 99999999864     277778887754110      00011123789999999999999999999


Q ss_pred             EEEecCCCCceeeEEecC-CCcceeeeeccCCcceec
Q 012721          409 RIFSHGVGSAGGITVEAG-KNENRKPILQAAPRARRS  444 (457)
Q Consensus       409 ~iw~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~  444 (457)
                      ++||+.++ +....+.+| ..+|.+++  |++...++
T Consensus       276 ~vwd~~~~-~~~~~~~~~h~~~v~~~~--~~~~~l~s  309 (342)
T 1yfq_A          276 SCWNLQTR-KKIKNFAKFNEDSVVKIA--CSDNILCL  309 (342)
T ss_dssp             EEEETTTT-EEEEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred             EEEcCccH-hHhhhhhcccCCCceEec--CCCCeEEE
Confidence            99999998 678888998 99999999  88887766

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.4e-34  Score=263.97  Aligned_cols=270  Identities=12%  Similarity=0.137  Sum_probs=207.3

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|++++||+|+.||.|+||++.++..                       ..+....+.+|.       
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~~~~~-------   57 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-----------------------NWELSDSWRAHD-------   57 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-----------------------CEEEEEEEECCS-------
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-----------------------cceecceeccCC-------
Confidence            35999999999999999999999999999999987653                       234667788898       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++|.|..++.+|++++.|+.|++||+..+......                                   
T Consensus        58 -----~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~-----------------------------------   97 (351)
T 3f3f_A           58 -----SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG-----------------------------------   97 (351)
T ss_dssp             -----SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS-----------------------------------
T ss_pred             -----CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc-----------------------------------
Confidence                 8899999953226899999999999999999876421000                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeec------C
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDM------K  259 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~------~  259 (457)
                                      ...+++..+ ..|...|.+++|+|+  +.+|+++ .|+.|++||++. ......+..      .
T Consensus        98 ----------------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           98 ----------------RRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE-PSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             ----------------CSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS-TTCTTCCEEEEEEESC
T ss_pred             ----------------cCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC-hHHhcccccccccccc
Confidence                            000112222 678999999999999  9999999 999999999983 333222111      1


Q ss_pred             CCcccCCCCceEEEEEecC---CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721          260 PSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  336 (457)
                      ......|...+.+++|+|+   + .++++++.|+.+.+|+...++..     ..          ..+.+|...|++++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~-----~~----------~~~~~h~~~i~~~~~~  223 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH-----VA----------AKLPGHKSLIRSISWA  223 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE-----EE----------EECCCCCSCEEEEEEC
T ss_pred             ccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee-----ee----------eecCCCCcceeEEEEC
Confidence            1112468889999999997   6 89999999999988887765421     11          1235678899999999


Q ss_pred             cCC----CeEEEEec-CcEEEEeccCCC---------------------------------------------CceeEee
Q 012721          337 NDG----QHLLSRDY-MNLKLWDIRMDS---------------------------------------------TPVATFK  366 (457)
Q Consensus       337 ~~g----~~l~s~~~-~~i~~wd~~~~~---------------------------------------------~~~~~~~  366 (457)
                      |++    ++|++++. +.|++||++...                                             +.+..+.
T Consensus       224 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (351)
T 3f3f_A          224 PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD  303 (351)
T ss_dssp             CCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred             CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence            998    78998875 999999997521                                             3344455


Q ss_pred             eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721          367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                      +|...+               ++++|+|++++|++++.||.|++|++.+++
T Consensus       304 ~h~~~v---------------~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          304 DHNGEV---------------WSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             TTSSCE---------------EEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             cccccE---------------EEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence            555543               799999999999999999999999999874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=281.32  Aligned_cols=311  Identities=12%  Similarity=0.095  Sum_probs=224.8

Q ss_pred             CCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      +...+.|...|.+++|+|++++||+|+.||.|+||++.....                       ....+..+.+|.   
T Consensus        60 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-----------------------~~~~~~~~~~h~---  113 (416)
T 2pm9_A           60 PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-----------------------AINSMARFSNHS---  113 (416)
T ss_dssp             CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-----------------------CCCEEEECCCSS---
T ss_pred             EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-----------------------cccchhhccCCc---
Confidence            344456899999999999999999999999999999986321                       112556788888   


Q ss_pred             cccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccc------eeEEE--eecCCCceeeeeeccccccccc
Q 012721          105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQK------VKKIK--EMDHFPFVSSENTLLAEKNFMN  175 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~  175 (457)
                               ..|.+++|  +++ +.+|++++.|+.|++||+.+++      .....  .......+.+++|.+..+..+.
T Consensus       114 ---------~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  182 (416)
T 2pm9_A          114 ---------SSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA  182 (416)
T ss_dssp             ---------SCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEE
T ss_pred             ---------cceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEE
Confidence                     88999999  676 8899999999999999998875      22111  1123345667777665333332


Q ss_pred             cCCCCCceeccCCccccccceEEEeccCccccccceeeccCC------CCCeeEEEeCCCC-CEEEEe-CCC---eEEEE
Q 012721          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH------DFNINSISNNSDC-ETFVSA-DDL---RINLW  244 (457)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~l~~~-~d~---~i~iw  244 (457)
                      ...             .++.+++||++..   +++..+ ..+      ...|.+++|+|++ .+++++ .|+   .|++|
T Consensus       183 ~~~-------------~dg~v~iwd~~~~---~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          183 SAG-------------SSNFASIWDLKAK---KEVIHL-SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             EES-------------SSSCEEEEETTTT---EEEEEE-CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             EEc-------------CCCCEEEEECCCC---CcceEE-eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            211             2568999999754   333333 333      7889999999997 688888 888   99999


Q ss_pred             EcCCCcceeeeeecCCCccc-CCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccc
Q 012721          245 NLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (457)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (457)
                      |++........       +. +|...|.+++|+| ++ .+|++++.||.|++||+++++..    ..             
T Consensus       246 d~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~~----~~-------------  300 (416)
T 2pm9_A          246 DLRNANTPLQT-------LNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQL----SQ-------------  300 (416)
T ss_dssp             ETTSTTSCSBC-------CCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCEE----EE-------------
T ss_pred             eCCCCCCCcEE-------eecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCccc----ee-------------
Confidence            99944344433       55 7999999999999 77 99999999999999999987533    22             


Q ss_pred             eeccccceEEEEEccCC-CeEEEEec-CcEEEEeccCCCCceeEeee--------------------ccccccccccccC
Q 012721          323 FTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIRMDSTPVATFKI--------------------HEHLRPKLCDLYN  380 (457)
Q Consensus       323 ~~~h~~~v~~~~~s~~g-~~l~s~~~-~~i~~wd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~  380 (457)
                      +.+|...|.+++|+|++ .+|++++. +.|++||+.. .........                    |...+... .+..
T Consensus       301 ~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  378 (416)
T 2pm9_A          301 FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN-LTNTLDEQETETKQQESETDFWNNVSREESKEKPSVF-HLQA  378 (416)
T ss_dssp             EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC-CCCSSCC----------------------CCSCCCSS-CCCC
T ss_pred             ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC-CCCCcccccccccccCCcccccccccccccccccccc-cccC
Confidence            34567889999999999 89998874 9999999975 322111100                    11100000 0000


Q ss_pred             CC-CccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          381 ND-SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       381 ~~-~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      .. ....+..++|+|||++|++++.|+.|+||++.+.
T Consensus       379 ~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          379 PTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             CccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence            00 1112358999999999999999999999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-33  Score=257.01  Aligned_cols=246  Identities=14%  Similarity=0.264  Sum_probs=201.5

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|...|.+++|+|++++|++|+.||.|++||+.+++                           .+..+.+|.       
T Consensus        62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---------------------------~~~~~~~~~-------  107 (312)
T 4ery_A           62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHS-------  107 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------------------------EEEEEECCS-------
T ss_pred             ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc---------------------------EEEEEcCCC-------
Confidence            3589999999999999999999999999999998765                           456788888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++|  ++++++|++++.|+.|++||+.+++....+                                   
T Consensus       108 -----~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------------------------------  145 (312)
T 4ery_A          108 -----NYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL-----------------------------------  145 (312)
T ss_dssp             -----SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTCCEEEEE-----------------------------------
T ss_pred             -----CCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCEEEEEe-----------------------------------
Confidence                 88999999  789999999999999999999887654321                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                ..|...|.+++|+|++++|+++ .|+.|++||++ .++....+      ...+.
T Consensus       146 --------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~------~~~~~  192 (312)
T 4ery_A          146 --------------------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTL------IDDDN  192 (312)
T ss_dssp             --------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEE------CCSSC
T ss_pred             --------------------------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeEE------eccCC
Confidence                                      5688899999999999999999 99999999998 45444432      34566


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      ..+.+++|+|++ ++|++++.||.|++||+++++..    ..+..|...          ...+......+++++|++|+.
T Consensus       193 ~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~  257 (312)
T 4ery_A          193 PPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCL----KTYTGHKNE----------KYCIFANFSVTGGKWIVSGSE  257 (312)
T ss_dssp             CCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEE----EEECSSCCS----------SSCCCEEEECSSSCEEEECCT
T ss_pred             CceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEEEecCCc----------eEEEEEEEEeCCCcEEEEECC
Confidence            789999999999 99999999999999999987643    333321100          011222333467889999875


Q ss_pred             -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe--CCCcEEEEecC
Q 012721          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG  414 (457)
Q Consensus       348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~iw~~~  414 (457)
                       +.|++||+.. ++.+..+.+|...+               .+++|+|++.+|++++  .|++|++|+.+
T Consensus       258 dg~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          258 DNLVYIWNLQT-KEIVQKLQGHTDVV---------------ISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             TSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             CCEEEEEECCC-chhhhhhhccCCcE---------------EEEeecCcCCceEEEEccCCccEEEecCC
Confidence             9999999986 78888999888765               6899999999999987  69999999964

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-34  Score=259.07  Aligned_cols=265  Identities=14%  Similarity=0.097  Sum_probs=217.9

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|++++| |++++||+|+.||.|++||+.+++                           ....+..|.        
T Consensus        16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---------------------------~~~~~~~~~--------   59 (313)
T 3odt_A           16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---------------------------LGTVVYTGQ--------   59 (313)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---------------------------EEEEEEECS--------
T ss_pred             CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---------------------------EEEEeecCC--------
Confidence            49999999999 999999999999999999997655                           345667777        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..|.+++|  ++++.+|++++.|+.|++|++......                                       
T Consensus        60 ----~~v~~~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~---------------------------------------   94 (313)
T 3odt_A           60 ----GFLNSVCY--DSEKELLLFGGKDTMINGVPLFATSGE---------------------------------------   94 (313)
T ss_dssp             ----SCEEEEEE--ETTTTEEEEEETTSCEEEEETTCCTTS---------------------------------------
T ss_pred             ----ccEEEEEE--CCCCCEEEEecCCCeEEEEEeeecCCC---------------------------------------
Confidence                88999999  689999999999999999998764211                                       


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                        +++..+ .+|...|.+++|  ++++++++ .|+.|++||.   ......       +..|..
T Consensus        95 ------------------~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~~-------~~~~~~  143 (313)
T 3odt_A           95 ------------------DPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVYN-------LQAHNA  143 (313)
T ss_dssp             ------------------CC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TEEEEE-------EECCSS
T ss_pred             ------------------Ccccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEEe-------cccCCC
Confidence                              111122 678999999999  57789998 9999999992   333332       567899


Q ss_pred             ceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721          269 VITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (457)
Q Consensus       269 ~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-  346 (457)
                      .+.+++|.| ++ .++++++.||.|++||.....      ..+..            .|...+.+++|+|++. +++++ 
T Consensus       144 ~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~------~~~~~------------~~~~~i~~~~~~~~~~-~~~~~~  203 (313)
T 3odt_A          144 SVWDAKVVSFSE-NKFLTASADKTIKLWQNDKVI------KTFSG------------IHNDVVRHLAVVDDGH-FISCSN  203 (313)
T ss_dssp             CEEEEEEEETTT-TEEEEEETTSCEEEEETTEEE------EEECS------------SCSSCEEEEEEEETTE-EEEEET
T ss_pred             ceeEEEEccCCC-CEEEEEECCCCEEEEecCceE------EEEec------------cCcccEEEEEEcCCCe-EEEccC
Confidence            999999999 66 999999999999999944321      11111            1567899999999998 66655 


Q ss_pred             cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      ++.|++||++. ++++..+..|...+               ++++|+|++ .|++++.||.|++||+.++ +....+..|
T Consensus       204 dg~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~~dg~v~iwd~~~~-~~~~~~~~~  265 (313)
T 3odt_A          204 DGLIKLVDMHT-GDVLRTYEGHESFV---------------YCIKLLPNG-DIVSCGEDRTVRIWSKENG-SLKQVITLP  265 (313)
T ss_dssp             TSEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTS-CEEEEETTSEEEEECTTTC-CEEEEEECS
T ss_pred             CCeEEEEECCc-hhhhhhhhcCCceE---------------EEEEEecCC-CEEEEecCCEEEEEECCCC-ceeEEEecc
Confidence            59999999986 78888888888765               689999999 5889999999999999999 778889999


Q ss_pred             CCcceeeeeccCCcceec
Q 012721          427 KNENRKPILQAAPRARRS  444 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~  444 (457)
                      ..++.+++|+|++.....
T Consensus       266 ~~~i~~~~~~~~~~~~~~  283 (313)
T 3odt_A          266 AISIWSVDCMSNGDIIVG  283 (313)
T ss_dssp             SSCEEEEEECTTSCEEEE
T ss_pred             CceEEEEEEccCCCEEEE
Confidence            999999999999985443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-34  Score=270.64  Aligned_cols=294  Identities=13%  Similarity=0.192  Sum_probs=213.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc-CCcccccccccccc
Q 012721           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIE  113 (457)
Q Consensus        35 V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~  113 (457)
                      +.+++|++  ..+++++.||.|++|++.+++.                           ...+.. |.            
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------------~~~~~~~~~------------  134 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------------SALAETDES------------  134 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------------EEEEECCTT------------
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------------eEeeecCCC------------
Confidence            45577774  5577888999999999987763                           223333 55            


Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|.+++|  ++++.+|++++.||.|++||+.+++....+. .....+.+++|.   +..+...             ..+
T Consensus       135 ~~v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~l~~~-------------~~d  195 (401)
T 4aez_A          135 TYVASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCLSWN---RHVLSSG-------------SRS  195 (401)
T ss_dssp             CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEEE---TTEEEEE-------------ETT
T ss_pred             CCEEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEEec-CCCCceEEEEEC---CCEEEEE-------------cCC
Confidence            78999999  7899999999999999999999887766554 334457777772   2222211             135


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                      +.+++||+....  .....+ .+|...|.+++|+|++.+|++| .|+.|++||++ .+.....       +..|...|.+
T Consensus       196 g~i~i~d~~~~~--~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~-------~~~~~~~v~~  264 (401)
T 4aez_A          196 GAIHHHDVRIAN--HQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFT-------KTNHNAAVKA  264 (401)
T ss_dssp             SEEEEEETTSSS--CEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEE-------ECCCSSCCCE
T ss_pred             CCEEEEecccCc--ceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEE-------ecCCcceEEE
Confidence            689999997432  233334 7899999999999999999999 99999999999 4444433       5678999999


Q ss_pred             EEEecCCccEEEEEc--cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---c
Q 012721          273 AEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y  347 (457)
Q Consensus       273 v~~~p~~~~~l~~~~--~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~  347 (457)
                      ++|+|++..++++++  .|+.|++||+++++..    ..+.              +...|.+++|+|++++|++++   +
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~--------------~~~~v~~~~~s~~~~~l~~~~g~~d  326 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVD--------------AGSQVTSLIWSPHSKEIMSTHGFPD  326 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEE--------------CSSCEEEEEECSSSSEEEEEECTTT
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEe--------------CCCcEEEEEECCCCCeEEEEeecCC
Confidence            999998867888866  8999999999987543    2222              246799999999999999843   5


Q ss_pred             CcEEEEeccCCCCcee--EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          348 MNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      |.|++||+.. ++...  .+.+|...+               ++++|+|++.+|++++.||.|++|++.+++........
T Consensus       327 g~i~v~~~~~-~~~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  390 (401)
T 4aez_A          327 NNLSIWSYSS-SGLTKQVDIPAHDTRV---------------LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPI  390 (401)
T ss_dssp             CEEEEEEEET-TEEEEEEEEECCSSCC---------------CEEEECTTSSEEEEECTTSEEEEEECCC----------
T ss_pred             CcEEEEecCC-ccceeEEEecCCCCCE---------------EEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccc
Confidence            9999999975 44433  355676654               68999999999999999999999999998544444444


Q ss_pred             CCCcceee
Q 012721          426 GKNENRKP  433 (457)
Q Consensus       426 ~~~~v~~~  433 (457)
                      +..+...+
T Consensus       391 ~~~~~~~i  398 (401)
T 4aez_A          391 TKTPSSSI  398 (401)
T ss_dssp             --------
T ss_pred             cCCCccce
Confidence            44444443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.2e-34  Score=265.48  Aligned_cols=297  Identities=13%  Similarity=0.154  Sum_probs=220.9

Q ss_pred             ccCCceEEEEECCC----CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        30 ~h~~~V~~~~~s~~----~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      .|.++|++++|+|+    ..++++++.++.|+||++.+++.                           +..+..|..   
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~---------------------------~~~~~~~~~---   65 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE---------------------------IRLLQSYVD---   65 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC---------------------------EEEEEEEEC---
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE---------------------------EEeeeeccc---
Confidence            48999999999984    45666666677999999986653                           122332210   


Q ss_pred             ccccccccCcEEEEEEEecCC--CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          106 YLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                          ..+...|.+++|.|...  +.+|++++.|+.|++||+.+++....+                              
T Consensus        66 ----~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------------------------------  111 (366)
T 3k26_A           66 ----ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY------------------------------  111 (366)
T ss_dssp             ----SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE------------------------------
T ss_pred             ----cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee------------------------------
Confidence                01227899999965322  679999999999999999887654331                              


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                                                     .+|...|.+++|+| ++.+|+++ .|+.|++||++ .++....+    .
T Consensus       112 -------------------------------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~----~  155 (366)
T 3k26_A          112 -------------------------------VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-TDTLVAIF----G  155 (366)
T ss_dssp             -------------------------------ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT-TTEEEEEE----C
T ss_pred             -------------------------------cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee-cCeEEEEe----c
Confidence                                           57889999999999 99999999 99999999998 55555442    1


Q ss_pred             cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccc-----------ccccCcccceeccccce
Q 012721          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA-----------AESHGSKSFFTEIIASI  330 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~h~~~v  330 (457)
                      .+.+|...|.+++|+|++ .+|++++.||.|++||+++++............           ...........+|...|
T Consensus       156 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  234 (366)
T 3k26_A          156 GVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV  234 (366)
T ss_dssp             STTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred             ccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence            136799999999999999 999999999999999999865331100000000           00000112234488999


Q ss_pred             EEEEEccCCCeEEEEec-CcEEEEeccCCCC-------------ceeEeeeccccccccccccCCCCccccceEEEcCC-
Q 012721          331 SDIKFANDGQHLLSRDY-MNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-  395 (457)
Q Consensus       331 ~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-  395 (457)
                      .+++|+  +++|++++. +.|++||++....             .+..+..|...+               .+++|+|+ 
T Consensus       235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~  297 (366)
T 3k26_A          235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI---------------WYMRFSMDF  297 (366)
T ss_dssp             CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS---------------SCCCCEECT
T ss_pred             EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE---------------EEEEEcCCC
Confidence            999999  778888864 9999999975322             245555555543               68999999 


Q ss_pred             -CcEEEEEeCCCcEEEEecCCCCc---eeeEEecC--CCcceeeeeccCCcceec
Q 012721          396 -GLHFATGSYSNLLRIFSHGVGSA---GGITVEAG--KNENRKPILQAAPRARRS  444 (457)
Q Consensus       396 -~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~--~~~v~~~~~~p~~~~~~~  444 (457)
                       +++|++|+.||.|++||+.+++.   ....+.+|  ..+|.+++|+|++....+
T Consensus       298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  352 (366)
T 3k26_A          298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIA  352 (366)
T ss_dssp             TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEE
Confidence             99999999999999999998742   33467787  799999999999987776

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-34  Score=309.30  Aligned_cols=359  Identities=14%  Similarity=0.175  Sum_probs=260.3

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|.+++|+|++++||+|+.||+|+|||+.+++                           .+..+.+|.        
T Consensus       655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---------------------------~~~~~~~~~--------  699 (1249)
T 3sfz_A          655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK---------------------------LVHTYDEHS--------  699 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------------------------EEEEEECCS--------
T ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc---------------------------eEEEEcCCC--------
Confidence            489999999999999999999999999999998776                           456788888        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCC---------
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP---------  180 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  180 (457)
                          ..|.+++|.|..++.++++++.|+.|++||+.+++....... ....+.+++|++....++......         
T Consensus       700 ----~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~  774 (1249)
T 3sfz_A          700 ----EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-HTNSVNHCRFSPDDELLASCSADGTLRLWDVRS  774 (1249)
T ss_dssp             ----SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC-CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG
T ss_pred             ----CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC-CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC
Confidence                889999995444677899999999999999999887665543 345588888877544333322211         


Q ss_pred             ----------------------------CceeccCCcc---ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC
Q 012721          181 ----------------------------SFAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD  229 (457)
Q Consensus       181 ----------------------------~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  229 (457)
                                                  ...+.+++..   ..++.+.+|+....   .....+..+|...|.+++|+|+
T Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v~~~~~sp~  851 (1249)
T 3sfz_A          775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTIQYCDFSPY  851 (1249)
T ss_dssp             TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCCCEEEECSS
T ss_pred             CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCceEEEEEcCC
Confidence                                        1122233331   22346777777543   2333343689999999999999


Q ss_pred             CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee-----
Q 012721          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-----  303 (457)
Q Consensus       230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~-----  303 (457)
                      +.+++++ .|+.|++||+. .+.....       +.+|...|.+++|+|++ .+|++++.||.|++||+.+....     
T Consensus       852 ~~~l~~~~~dg~v~vwd~~-~~~~~~~-------~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~  922 (1249)
T 3sfz_A          852 DHLAVIALSQYCVELWNID-SRLKVAD-------CRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVL  922 (1249)
T ss_dssp             TTEEEEECSSSCEEEEETT-TTEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSE
T ss_pred             CCEEEEEeCCCeEEEEEcC-CCceeee-------cCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecc
Confidence            9999999 99999999999 5555543       57899999999999999 99999999999999997642100     


Q ss_pred             -----------------------------------------------------------ccccccccccccccCccccee
Q 012721          304 -----------------------------------------------------------DHSARILRDAAESHGSKSFFT  324 (457)
Q Consensus       304 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~  324 (457)
                                                                                 ...+.++..  ........+.
T Consensus       923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~--~~~~~~~~~~ 1000 (1249)
T 3sfz_A          923 KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL--PNNRVFSSGV 1000 (1249)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEET--TTTSCEEECC
T ss_pred             cceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEc--CCCceeeecc
Confidence                                                                       000011111  0111223456


Q ss_pred             ccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccc-------------------cccC----
Q 012721          325 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC-------------------DLYN----  380 (457)
Q Consensus       325 ~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~----  380 (457)
                      +|...|.+++|+|+|++|++++. +.|++||+.. ++... ...|...+....                   +...    
T Consensus      1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A         1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp             CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT-TEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CceEE-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee
Confidence            78899999999999999998865 9999999864 33221 112221111000                   0000    


Q ss_pred             ---CCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          381 ---NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       381 ---~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                         ......+++++|+||+++|++++.|++|++||+.++ .....+.+|..+|.+++|+|++...++|
T Consensus      1079 ~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~-~~~~~l~~h~~~v~~~~~s~dg~~lat~ 1145 (1249)
T 3sfz_A         1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL-SPLHELKGHNGCVRCSAFSLDGILLATG 1145 (1249)
T ss_dssp             EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS-SCSBCCCCCSSCEEEEEECSSSSEEEEE
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc-ceeeeeccCCCcEEEEEECCCCCEEEEE
Confidence               001112478999999999999999999999999998 6788899999999999999999877773

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=290.69  Aligned_cols=160  Identities=11%  Similarity=0.146  Sum_probs=120.2

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|..+|.+++|+| |++||+++.|++|+|||+.+++.                           +..+. |.       
T Consensus        55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~---------------------------~~~~~-~~-------   98 (902)
T 2oaj_A           55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV---------------------------LTTVF-VP-------   98 (902)
T ss_dssp             CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE---------------------------EEEEE-CS-------
T ss_pred             cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE---------------------------EEEEc-CC-------
Confidence            34788999999999 88999999999999999987653                           33343 44       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEe----------ecCCCceeeeeeccccccccccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE----------MDHFPFVSSENTLLAEKNFMNEHN  178 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  178 (457)
                           +.|++++|  +|++++|++|+.||+|++||+.+++......          ......|.+++|++.++..+..+.
T Consensus        99 -----~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~  171 (902)
T 2oaj_A           99 -----GKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY  171 (902)
T ss_dssp             -----SCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred             -----CCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence                 67999999  7899999999999999999999886532111          112345778888875543332221


Q ss_pred             CCCceeccCCccccccceEEEeccCccccccceeec-----------------cCCCCCeeEEEeCCCCCEEEEe-CCCe
Q 012721          179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP-----------------HAHDFNINSISNNSDCETFVSA-DDLR  240 (457)
Q Consensus       179 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------~~h~~~v~~~~~~~~~~~l~~~-~d~~  240 (457)
                                   .++.+ +||++...   +++.+.                 ..|...|.+++|+|+|.+|+++ .|+.
T Consensus       172 -------------~dg~v-lWd~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~  234 (902)
T 2oaj_A          172 -------------EYVTL-TYSLVENE---IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS  234 (902)
T ss_dssp             -------------SSCEE-EEETTTTE---EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred             -------------CCCcE-EEECCCCc---eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence                         24578 99997542   333331                 2346789999999999999999 9999


Q ss_pred             EEEEEcCC
Q 012721          241 INLWNLEI  248 (457)
Q Consensus       241 i~iwd~~~  248 (457)
                      |++||++.
T Consensus       235 i~lWd~~~  242 (902)
T 2oaj_A          235 LVFWDANS  242 (902)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            99999973

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.9e-34  Score=262.53  Aligned_cols=293  Identities=10%  Similarity=0.089  Sum_probs=206.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCCC-------eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGG-------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      .-+|+|++|+||+++||+|+.+.       .|+||+++.....     ....+            .......|.+|.   
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~-----~~~~~------------~~~~~~~l~~~~---   73 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDT-----EKEQF------------HILSEFALEDND---   73 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSS-----HHHHE------------EEEEEEECCTTS---
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcc-----eeeee------------eeeeEEEccCCC---
Confidence            34899999999999999987533       5999999866531     00000            001122456666   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEe-----------eCCCeEEEEEecccceeE--EEeecC------CCceeeee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILS-----------TNDKTIKLWKVRDQKVKK--IKEMDH------FPFVSSEN  165 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~-----------s~d~~i~vw~~~~~~~~~--~~~~~~------~~~~~~~~  165 (457)
                               ..|.++++    +++.++++           +.|+.+++|++.......  ......      ...+..++
T Consensus        74 ---------~~v~s~~~----~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  140 (365)
T 4h5i_A           74 ---------DSPTAIDA----SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVY  140 (365)
T ss_dssp             ---------CCCCEEEE----ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEE
T ss_pred             ---------CceEEEEe----CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEE
Confidence                     67888877    23455554           467889999987653221  111111      01123334


Q ss_pred             eccccccccccCCCCCceeccCCcc------ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCC
Q 012721          166 TLLAEKNFMNEHNPPSFAHGYHLEW------TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDL  239 (457)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~  239 (457)
                      |                  +++|.+      ..++.+++||.++.   +++..+  .|...|.+++|+|+|++++++.++
T Consensus       141 f------------------SpDg~~la~as~~~d~~i~iwd~~~~---~~~~~~--~~~~~V~~v~fspdg~~l~s~s~~  197 (365)
T 4h5i_A          141 I------------------SREGTVAAIASSKVPAIMRIIDPSDL---TEKFEI--ETRGEVKDLHFSTDGKVVAYITGS  197 (365)
T ss_dssp             E------------------CTTSSCEEEEESCSSCEEEEEETTTT---EEEEEE--ECSSCCCEEEECTTSSEEEEECSS
T ss_pred             E------------------cCCCCEEEEEECCCCCEEEEeECCCC---cEEEEe--CCCCceEEEEEccCCceEEeccce
Confidence            3                  444442      12458999999753   334433  477889999999999999999555


Q ss_pred             eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC----eEEEEEccCCeeecccccccccccc
Q 012721          240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAE  315 (457)
Q Consensus       240 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg----~i~lwd~~~~~~~~~~~~~~~~~~~  315 (457)
                      .+.+|+..........      ....|...|.+++|+|++ .++++++.|+    .+++||+.........         
T Consensus       198 ~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~---------  261 (365)
T 4h5i_A          198 SLEVISTVTGSCIARK------TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLR---------  261 (365)
T ss_dssp             CEEEEETTTCCEEEEE------CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEE---------
T ss_pred             eEEEEEeccCcceeee------ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceeccee---------
Confidence            6667766633333322      246788999999999999 9999998887    6888998775432110         


Q ss_pred             ccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEe-eeccccccccccccCCCCccccceEEEc
Q 012721          316 SHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVS  393 (457)
Q Consensus       316 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s  393 (457)
                          ...+.+|...|++++|+|+|++||+|+. +.|+|||+++ ++++..+ .+|...+               ++++|+
T Consensus       262 ----~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V---------------~~v~fS  321 (365)
T 4h5i_A          262 ----SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAI---------------TEVTIS  321 (365)
T ss_dssp             ----EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSCE---------------EEEEEC
T ss_pred             ----eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCCE---------------EEEEEC
Confidence                1124567789999999999999999875 9999999986 7777775 6888865               799999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCC
Q 012721          394 GDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       394 ~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      |||++||+|+.|++|+||++...
T Consensus       322 pdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          322 PDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999999999765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-33  Score=271.80  Aligned_cols=303  Identities=13%  Similarity=0.266  Sum_probs=233.2

Q ss_pred             cccCCc-eEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           29 LQDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~~~-V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..|.+. +.++.|+  +++|++|+.||+|++||+.+++                           .+..+.+|.      
T Consensus       118 ~~h~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~~---------------------------~~~~~~~h~------  162 (464)
T 3v7d_B          118 RGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHD------  162 (464)
T ss_dssp             ECCSSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS------
T ss_pred             cCCCCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCCc---------------------------EEEEEeCCC------
Confidence            357777 4677775  7899999999999999988765                           557788998      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccc-cccccccCCCCCceecc
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA-EKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  186 (457)
                            +.|.+++|  ++++ +|++++.|++|++||+.+++....... ....+.+++|.+. ++..+.+.         
T Consensus       163 ------~~V~~l~~--~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~---------  223 (464)
T 3v7d_B          163 ------GGVWALKY--AHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTG---------  223 (464)
T ss_dssp             ------SCEEEEEE--CSTT-EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEEEEEE---------
T ss_pred             ------cCEEEEEE--cCCC-EEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCEEEEE---------
Confidence                  88999999  5666 999999999999999999876655542 3455777777752 22222211         


Q ss_pred             CCccccccceEEEeccCccccc--------------------cceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEE
Q 012721          187 HLEWTENMATKIANVGNSVHAR--------------------CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~--------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd  245 (457)
                          ..++.+++||+.......                    ....+ .+|...|.++  ++++++++++ .|+.|++||
T Consensus       224 ----s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd  296 (464)
T 3v7d_B          224 ----SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGHMASVRTV--SGHGNIVVSGSYDNTLIVWD  296 (464)
T ss_dssp             ----ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-CCCSSCEEEE--EEETTEEEEEETTSCEEEEE
T ss_pred             ----cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-cCccceEEEE--cCCCCEEEEEeCCCeEEEEE
Confidence                125689999987643221                    12333 7888888887  4678899999 999999999


Q ss_pred             cCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec
Q 012721          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (457)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (457)
                      ++ .++....       +.+|...|.+++|+|++ ++|++|+.||.|++||+++++..    ..             +.+
T Consensus       297 ~~-~~~~~~~-------~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~----~~-------------~~~  350 (464)
T 3v7d_B          297 VA-QMKCLYI-------LSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELM----YT-------------LQG  350 (464)
T ss_dssp             TT-TTEEEEE-------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEE----EE-------------ECC
T ss_pred             CC-CCcEEEE-------ecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEE----EE-------------EeC
Confidence            98 5555544       57899999999999999 99999999999999999987543    22             345


Q ss_pred             cccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721          326 IIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (457)
Q Consensus       326 h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  404 (457)
                      |...|.++.|+  +++|++++. |.|++||++. ........ +...+               ..++|+|++.+|++|+ 
T Consensus       351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~~---------------~~~~~~~~~~~l~~~~-  410 (464)
T 3v7d_B          351 HTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNLS---------------AITTFYVSDNILVSGS-  410 (464)
T ss_dssp             CSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTCC---------------CEEEEEECSSEEEEEE-
T ss_pred             CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCCc---------------cEEEEEeCCCEEEEec-
Confidence            67899999997  578888764 9999999985 44443332 33222               4689999999999999 


Q ss_pred             CCcEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721          405 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       405 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                      ||.|++||+.+++.....+..|..++.+++|++.
T Consensus       411 dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~  444 (464)
T 3v7d_B          411 ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK  444 (464)
T ss_dssp             TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETT
T ss_pred             CCeEEEEECCCCcEEehhhccCCCcEEEEEecCC
Confidence            8999999999994433347889999999999844

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-33  Score=267.11  Aligned_cols=268  Identities=15%  Similarity=0.216  Sum_probs=213.2

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      ..+....|++++++||+|+.||.|+|||+.+++                           ....+.+|.           
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~h~-----------  139 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL---------------------------QREIDQAHV-----------  139 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE---------------------------EEEETTSSS-----------
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc---------------------------eeeeccccc-----------
Confidence            556666889999999999999999999988665                           345667888           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                       +.|.+++|  ++++.+|++++.|+.|++||+.+++....+                                       
T Consensus       140 -~~v~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---------------------------------------  177 (420)
T 3vl1_A          140 -SEITKLKF--FPSGEALISSSQDMQLKIWSVKDGSNPRTL---------------------------------------  177 (420)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCCCEEE---------------------------------------
T ss_pred             -CccEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCceEE---------------------------------------
Confidence             88999999  789999999999999999999877543321                                       


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                                            .+|...|.+++|+|++++|+++ .|+.|++||++ .++....+...    ..+...+.
T Consensus       178 ----------------------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~----~~~~~~v~  230 (420)
T 3vl1_A          178 ----------------------IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNRK----ENPHDGVN  230 (420)
T ss_dssp             ----------------------ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECBT----TBTTCCEE
T ss_pred             ----------------------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeecC----CCCCCCcc
Confidence                                  5789999999999999999999 99999999998 55555554221    22334444


Q ss_pred             E---------------------EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccce
Q 012721          272 S---------------------AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (457)
Q Consensus       272 ~---------------------v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  330 (457)
                      +                     ++|+|++ ++|++++.||.|++||+++++...    .+            ...|...|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~------------~~~~~~~v  293 (420)
T 3vl1_A          231 SIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTI----QL------------PSKFTCSC  293 (420)
T ss_dssp             EEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEE----EE------------CCTTSSCE
T ss_pred             EEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeE----Ec------------ccccCCCc
Confidence            4                     4557888 899999999999999999875331    11            12456789


Q ss_pred             EEEEEccCCC-eEEEEec-CcEEEEeccCCCCceeEeeecc-ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc
Q 012721          331 SDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  407 (457)
Q Consensus       331 ~~~~~s~~g~-~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  407 (457)
                      .+++|+|+++ +|++++. |.|++||++....++..+..|. ..+               ..+ +.+++.+|++++.|+.
T Consensus       294 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v---------------~~~-~~~~~~~l~s~~~d~~  357 (420)
T 3vl1_A          294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPI---------------NNV-YFAAGALFVSSGFDTS  357 (420)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCE---------------EEE-EEETTEEEEEETTTEE
T ss_pred             eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCc---------------eEE-EeCCCCEEEEecCCcc
Confidence            9999999998 8888875 9999999987455677777744 332               344 5668899999999999


Q ss_pred             EEEEecCCCC--------ceeeEEecCCCcceeeeeccCCc
Q 012721          408 LRIFSHGVGS--------AGGITVEAGKNENRKPILQAAPR  440 (457)
Q Consensus       408 i~iw~~~~~~--------~~~~~~~~~~~~v~~~~~~p~~~  440 (457)
                      |++|++...+        .....+.+|...+..++|+|++.
T Consensus       358 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          358 IKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             EEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred             EEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence            9999998742        22445778999999999999998

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7.8e-35  Score=275.92  Aligned_cols=279  Identities=14%  Similarity=0.147  Sum_probs=212.8

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      +.+++++|+|++++|++|+.||.|++|++.+.+..                           ..+..|.           
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------------~~~~~~~-----------   98 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------------KMLKRAD-----------   98 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------------TTSCSCC-----------
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------------eEEecCC-----------
Confidence            44668999999999999999999999998866532                           1223332           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                         +..+.+. ++++++|++++.|+.|++||+.+++....                                        
T Consensus        99 ---~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------------  134 (420)
T 3vl1_A           99 ---YTAVDTA-KLQMRRFILGTTEGDIKVLDSNFNLQREI----------------------------------------  134 (420)
T ss_dssp             ---EEEEEEE-CSSSCEEEEEETTSCEEEECTTSCEEEEE----------------------------------------
T ss_pred             ---ceEEEEE-ecCCCEEEEEECCCCEEEEeCCCcceeee----------------------------------------
Confidence               4444333 68999999999999999999987654332                                        


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                                           +.+|...|.+++|+|++++|+++ .|+.|++||++ .++....       +.+|...|.
T Consensus       135 ---------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~-------~~~h~~~v~  185 (420)
T 3vl1_A          135 ---------------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRT-------LIGHRATVT  185 (420)
T ss_dssp             ---------------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCCCEE-------EECCSSCEE
T ss_pred             ---------------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC-CCcCceE-------EcCCCCcEE
Confidence                                 15799999999999999999999 99999999998 4544443       578999999


Q ss_pred             EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCc-----------ccceeccccceEEEEEccCCC
Q 012721          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-----------KSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~h~~~v~~~~~s~~g~  340 (457)
                      +++|+|++ .+|++++.||.|++||+++++..    ..+..+......           ......+...+.+++|+|+++
T Consensus       186 ~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (420)
T 3vl1_A          186 DIAIIDRG-RNVLSASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK  260 (420)
T ss_dssp             EEEEETTT-TEEEEEETTSCEEEEETTTTEEE----EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred             EEEEcCCC-CEEEEEcCCCcEEEeECCCCcee----EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence            99999999 99999999999999999987654    223221100000           001122446677778899999


Q ss_pred             eEEEEec-CcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEEecCCCC
Q 012721          341 HLLSRDY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       341 ~l~s~~~-~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw~~~~~~  417 (457)
                      +|++++. |.|++||++. ++.+..+. .|...+               .+++|+|++. +|++|+.||.|++||+.+++
T Consensus       261 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          261 YVIAGHVSGVITVHNVFS-KEQTIQLPSKFTCSC---------------NSLTVDGNNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             EEEEEETTSCEEEEETTT-CCEEEEECCTTSSCE---------------EEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             EEEEEcCCCeEEEEECCC-CceeEEcccccCCCc---------------eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            9999875 9999999986 55555543 344443               6899999998 99999999999999999986


Q ss_pred             ceeeEEec-CCCcceeeeeccCCcceec
Q 012721          418 AGGITVEA-GKNENRKPILQAAPRARRS  444 (457)
Q Consensus       418 ~~~~~~~~-~~~~v~~~~~~p~~~~~~~  444 (457)
                      .....+.+ |..++..+.++ ++....+
T Consensus       325 ~~~~~~~~~~~~~v~~~~~~-~~~~l~s  351 (420)
T 3vl1_A          325 CPVGEFLINEGTPINNVYFA-AGALFVS  351 (420)
T ss_dssp             SCSEEEEESTTSCEEEEEEE-TTEEEEE
T ss_pred             CchhhhhccCCCCceEEEeC-CCCEEEE
Confidence            65677776 67788888555 5544444

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.5e-33  Score=267.04  Aligned_cols=262  Identities=19%  Similarity=0.280  Sum_probs=204.4

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|+||+|+|+|++||+|+.||+|+|||+.+++                           .+..+.+|.        
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---------------------------~~~~~~~h~--------  189 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS--------  189 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc---------------------------EEEEEeCCC--------
Confidence            478899999999999999999999999999998776                           457788998        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..|.++.|    ++.+|++++.|+.+++|+.........                                     
T Consensus       190 ----~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~-------------------------------------  224 (420)
T 4gga_A          190 ----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVA-------------------------------------  224 (420)
T ss_dssp             ----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE-------------------------------------
T ss_pred             ----CceEEEee----CCCEEEEEeCCCceeEeeecccceeeE-------------------------------------
Confidence                78999887    356999999999999999876432211                                     


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                            . +.+|...+..+.++|++.+++++ .|+.+++|+..........+    .....|..
T Consensus       225 ----------------------~-~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~----~~~~~~~~  277 (420)
T 4gga_A          225 ----------------------T-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----QTFTQHQG  277 (420)
T ss_dssp             ----------------------E-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS----EEECCCSS
T ss_pred             ----------------------E-ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee----eeecccCC
Confidence                                  1 16788999999999999999999 99999999998433221110    12567889


Q ss_pred             ceEEEEEecCCccEEEEE--ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          269 VITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~--~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      .|.+++|+|.+..+++++  +.|++|++||+++++..    ..+..              ...+.++.|+|+++.+++++
T Consensus       278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----~~~~~--------------~~~v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVDA--------------HSQVCSILWSPHYKELISGH  339 (420)
T ss_dssp             CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEEETTTTEEEEEE
T ss_pred             ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc----eeecc--------------ccceeeeeecCCCCeEEEEE
Confidence            999999999886777664  58999999999998654    22222              35789999999999998753


Q ss_pred             ---cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721          347 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  423 (457)
Q Consensus       347 ---~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~  423 (457)
                         |+.|++||+.+ ++++..+.+|...+               ++++|+|||++|+||+.|++|+|||+... ......
T Consensus       340 g~~d~~I~iwd~~~-~~~v~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~tvriWdv~~~-~~~~~~  402 (420)
T 4gga_A          340 GFAQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL-DPARRR  402 (420)
T ss_dssp             CTTTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCS-SCC---
T ss_pred             ecCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC-Cccchh
Confidence               49999999986 88999999998876               79999999999999999999999999876 344444


Q ss_pred             ecCCCcceee
Q 012721          424 EAGKNENRKP  433 (457)
Q Consensus       424 ~~~~~~v~~~  433 (457)
                      +.+.......
T Consensus       403 ~~~~~~~~~~  412 (420)
T 4gga_A          403 EREKASAAKS  412 (420)
T ss_dssp             ----------
T ss_pred             hhccCCcccc
Confidence            5554444333

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-33  Score=303.10  Aligned_cols=283  Identities=17%  Similarity=0.222  Sum_probs=233.5

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|++++|+|+|++||+|+.||+|+|||+.+++                           .+..+.+|.        
T Consensus       613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~---------------------------~~~~~~~h~--------  657 (1249)
T 3sfz_A          613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE---------------------------KLLDIKAHE--------  657 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS--------
T ss_pred             cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEeccCC--------
Confidence            599999999999999999999999999999998776                           456788898        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          +.|.+++|  ++++++|++++.|+.|++||+.+++.....                                    
T Consensus       658 ----~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~------------------------------------  695 (1249)
T 3sfz_A          658 ----DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVHTY------------------------------------  695 (1249)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEE------------------------------------
T ss_pred             ----CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEE------------------------------------
Confidence                88999999  789999999999999999999988654432                                    


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                               .+|...|.+++|+|  ++.++++| .|+.|++||++ .+.....       +.+|
T Consensus       696 -------------------------~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~~~~~-------~~~h  742 (1249)
T 3sfz_A          696 -------------------------DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNT-------MFGH  742 (1249)
T ss_dssp             -------------------------ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT-SSSEEEE-------ECCC
T ss_pred             -------------------------cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC-Ccchhhe-------ecCC
Confidence                                     57888999999999  55688888 99999999999 5555544       5789


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ...|.+++|+|++ .+|++++.||.|++||+++++...    .+...............+...+.+++|+|+|+++++++
T Consensus       743 ~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~  817 (1249)
T 3sfz_A          743 TNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERK----SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA  817 (1249)
T ss_dssp             SSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEE----EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred             CCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccc----eecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence            9999999999999 999999999999999999875431    11110000000001122345788999999999999998


Q ss_pred             cCcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          347 YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       347 ~~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      ++.+.+||+.. +..+..+. +|...+               .+++|+|++.++++++.||.|++|++.++ .....+.+
T Consensus       818 ~~~v~~~d~~~-~~~~~~~~~~~~~~v---------------~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~  880 (1249)
T 3sfz_A          818 KNKVLLFDIHT-SGLLAEIHTGHHSTI---------------QYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRG  880 (1249)
T ss_dssp             TTEEEEEETTT-CCEEEEEECSSSSCC---------------CEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECC
T ss_pred             CCcEEEEEecC-CCceeEEcCCCCCce---------------EEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCC
Confidence            99999999986 55555554 555544               68999999999999999999999999998 77888999


Q ss_pred             CCCcceeeeeccCCcceec
Q 012721          426 GKNENRKPILQAAPRARRS  444 (457)
Q Consensus       426 ~~~~v~~~~~~p~~~~~~~  444 (457)
                      |..+|.+++|+|++....+
T Consensus       881 h~~~v~~v~~spdg~~l~s  899 (1249)
T 3sfz_A          881 HLSWVHGVMFSPDGSSFLT  899 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEE
T ss_pred             CccceEEEEECCCCCEEEE
Confidence            9999999999999987766

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.8e-33  Score=263.52  Aligned_cols=275  Identities=15%  Similarity=0.197  Sum_probs=221.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (457)
                      .++.|+||++ ++||+|. |++|+|||..+++..                         .+..+.+|.            
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------~~~~~~~~~------------  147 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------QLLQMEQPG------------  147 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence            4678999975 5888876 899999999988642                         223345566            


Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|++|+|  +++|++|++|+.|++|++||+.+++.....                                        
T Consensus       148 ~~V~sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~~----------------------------------------  185 (420)
T 4gga_A          148 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----------------------------------------  185 (420)
T ss_dssp             CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEE----------------------------------------
T ss_pred             CcEEEEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEEE----------------------------------------
Confidence            78999999  789999999999999999999988654432                                        


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                                           .+|...+.+++++  +.+|++| .|+.+++||..........       +.+|...+..
T Consensus       186 ---------------------~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~  235 (420)
T 4gga_A          186 ---------------------TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCG  235 (420)
T ss_dssp             ---------------------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEE
T ss_pred             ---------------------eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE-------ecccccceee
Confidence                                 5788899988874  6789999 9999999999855555443       6789999999


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-eEEEE--e-cC
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR--D-YM  348 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~--~-~~  348 (457)
                      +.++|++ .++++++.|+.+++||...++.....             ......|...|.+++|+|.+. +++++  + |+
T Consensus       236 ~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~-------------~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~  301 (420)
T 4gga_A          236 LRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVP-------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR  301 (420)
T ss_dssp             EEECTTS-SEEEEEETTSCEEEEESSCCSSCSCC-------------SEEECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred             eeecCCC-CeeeeeeccccceEEeecccccccee-------------eeeecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence            9999999 99999999999999999886432111             112345678999999999765 44443  3 49


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe--CCCcEEEEecCCCCceeeEEecC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      .|++||+.+ ++++..+..+...                .++.|+|++..+++++  .|+.|+|||+.++ +.+..+.+|
T Consensus       302 ~I~iwd~~t-~~~~~~~~~~~~v----------------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH  363 (420)
T 4gga_A          302 HIRIWNVCS-GACLSAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGH  363 (420)
T ss_dssp             EEEEEETTT-TEEEEEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCC
T ss_pred             EEEEEeCCc-cccceeeccccce----------------eeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcCC
Confidence            999999986 7777777766554                5899999999888765  7999999999999 788899999


Q ss_pred             CCcceeeeeccCCcceecccccccccc
Q 012721          427 KNENRKPILQAAPRARRSSLSNLTRGL  453 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~~~~~~~~~~  453 (457)
                      .++|.+++|+|++...++  ++.+...
T Consensus       364 ~~~V~~l~~spdg~~l~S--~s~D~tv  388 (420)
T 4gga_A          364 TSRVLSLTMSPDGATVAS--AAADETL  388 (420)
T ss_dssp             SSCEEEEEECTTSSCEEE--EETTTEE
T ss_pred             CCCEEEEEEcCCCCEEEE--EecCCeE
Confidence            999999999999988887  4444433

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.6e-33  Score=255.04  Aligned_cols=240  Identities=13%  Similarity=0.180  Sum_probs=196.7

Q ss_pred             cceeeeeccCCccccccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccc
Q 012721           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (457)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (457)
                      ..+..++.+|.            +.|.+++|  +++ +++|++++.|++|++|++........                 
T Consensus         7 ~~l~~~l~gH~------------~~V~~l~~--~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~-----------------   55 (319)
T 3frx_A            7 LVLRGTLEGHN------------GWVTSLAT--SAGQPNLLLSASRDKTLISWKLTGDDQKFG-----------------   55 (319)
T ss_dssp             EEEEEEECCCS------------SCEEEEEE--CSSCTTEEEEEETTSEEEEEEEEEETTEEE-----------------
T ss_pred             EEEEEEEcccc------------ceEEEEEc--cCCCccEEEEecCCccEEEecCCCCCcccc-----------------
Confidence            34667889999            88999999  554 47999999999999999875432110                 


Q ss_pred             cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC
Q 012721          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (457)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~  248 (457)
                                                            .+++.+ .+|...|.+++|+|++++|++| .|++|++||++ 
T Consensus        56 --------------------------------------~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~-   95 (319)
T 3frx_A           56 --------------------------------------VPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA-   95 (319)
T ss_dssp             --------------------------------------EEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred             --------------------------------------ccceEE-eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC-
Confidence                                                  112222 6899999999999999999999 99999999998 


Q ss_pred             CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  328 (457)
                      .++....       +.+|...|.+++|+|++ .+|++|+.|++|++||++....     .             .+.+|..
T Consensus        96 ~~~~~~~-------~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~-----~-------------~~~~h~~  149 (319)
T 3frx_A           96 TGETYQR-------FVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCL-----A-------------TLLGHND  149 (319)
T ss_dssp             TTEEEEE-------EECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEE-----E-------------EECCCSS
T ss_pred             CCCeeEE-------EccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeE-----E-------------EEeccCC
Confidence            5555544       67899999999999999 9999999999999999975321     1             1345778


Q ss_pred             ceEEEEEccCC------CeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721          329 SISDIKFANDG------QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (457)
Q Consensus       329 ~v~~~~~s~~g------~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  401 (457)
                      .|.++.|+|.+      .+|++++. +.|++||++. .+....+.+|...+               .+++|+|++++|++
T Consensus       150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v---------------~~~~~sp~g~~l~s  213 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSNI---------------NTLTASPDGTLIAS  213 (319)
T ss_dssp             CEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSCE---------------EEEEECTTSSEEEE
T ss_pred             cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCcE---------------EEEEEcCCCCEEEE
Confidence            99999999854      47888764 9999999985 67777888888765               68999999999999


Q ss_pred             EeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       402 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      |+.||.|++||+.++ +....+.. ..++.+++|+|++...+.+
T Consensus       214 ~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~sp~~~~la~~  255 (319)
T 3frx_A          214 AGKDGEIMLWNLAAK-KAMYTLSA-QDEVFSLAFSPNRYWLAAA  255 (319)
T ss_dssp             EETTCEEEEEETTTT-EEEEEEEC-CSCEEEEEECSSSSEEEEE
T ss_pred             EeCCCeEEEEECCCC-cEEEEecC-CCcEEEEEEcCCCCEEEEE
Confidence            999999999999988 56666665 4689999999999877654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.5e-33  Score=259.42  Aligned_cols=285  Identities=14%  Similarity=0.153  Sum_probs=216.9

Q ss_pred             cccCCceEEEEECCC---CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           29 LQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~---~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ..|.+.|++++|+|+   |++||+|+.||.|+||++.+....                         ....+.+|.    
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-------------------------~~~~~~~h~----   86 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-------------------------IPKAQQMHT----   86 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-------------------------EEEEEEECS----
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-------------------------eEEEecccc----
Confidence            359999999999999   699999999999999999873321                         335678888    


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                              ..|.+++|  ++++++|++++.|+.|++||+.+++....                                 
T Consensus        87 --------~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---------------------------------  123 (368)
T 3mmy_A           87 --------GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQI---------------------------------  123 (368)
T ss_dssp             --------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE---------------------------------
T ss_pred             --------CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceee---------------------------------
Confidence                    88999999  78999999999999999999998765432                                 


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEe--CCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCc
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN--NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                                                   ..|...|.+++|  +|++.+|+++ .|+.|++||++ .++....+      
T Consensus       124 -----------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~------  167 (368)
T 3mmy_A          124 -----------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR-SSNPMMVL------  167 (368)
T ss_dssp             -----------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS-CSSCSEEE------
T ss_pred             -----------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC-CCcEEEEE------
Confidence                                         468889999999  8999999999 99999999998 45555442      


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe-
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-  341 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-  341 (457)
                       ..+ ..+.++.+.+   ..+++++.++.+.+||++.......   ...            ..+...+.++.+.++... 
T Consensus       168 -~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~~~~~~~~~  227 (368)
T 3mmy_A          168 -QLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR---RIE------------SPLKHQHRCVAIFKDKQNK  227 (368)
T ss_dssp             -ECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE---ECC------------CSCSSCEEEEEEEECTTSC
T ss_pred             -ecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh---hcc------------ccccCCCceEEEcccCCCC
Confidence             323 3566666664   5688888999999999987643211   111            111234566666665544 


Q ss_pred             ---EEEEec-CcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721          342 ---LLSRDY-MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       342 ---l~s~~~-~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                         +++++. +.|++||++...  ..+..+..|........   .......+++++|+|++++|++++.||.|++||+.+
T Consensus       228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS---APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C---CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             CCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc---ccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence               777764 999999998522  45667777664210000   000001237999999999999999999999999999


Q ss_pred             CCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          416 GSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       416 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      + +....+.+|..++.+++|+|++...++|
T Consensus       305 ~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          305 R-TKLKTSEQLDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             T-EEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred             C-cEEEEecCCCCCceEEEECCCCCeEEEE
Confidence            8 7788899999999999999999887774

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-32  Score=253.39  Aligned_cols=285  Identities=15%  Similarity=0.222  Sum_probs=208.9

Q ss_pred             ccceeeeeccCCccccccccccccCcEEEEEEEe----cCCCCEEEEeeCCCeEEEEEecccce-----eEEEee-cCCC
Q 012721           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQKV-----KKIKEM-DHFP  159 (457)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~----s~~~~~l~s~s~d~~i~vw~~~~~~~-----~~~~~~-~~~~  159 (457)
                      .......+++|.            +.|++++|.+    .+++.+|++|+.|++|++||+..++.     .....+ ....
T Consensus        10 ~~~~~~~l~gH~------------~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~   77 (343)
T 2xzm_R           10 QVVKRGILEGHS------------DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH   77 (343)
T ss_dssp             EEEEEEEEECCS------------SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS
T ss_pred             Eeeeeeeeccch------------hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC
Confidence            344667889999            8899999922    24788999999999999999975431     111122 2334


Q ss_pred             ceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC
Q 012721          160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD  238 (457)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d  238 (457)
                      .|.+++|.+....++...              .++.+++||++..   +++..+ .+|...|.+++|+|++++|+++ .|
T Consensus        78 ~V~~~~~~~~~~~l~s~s--------------~D~~v~lwd~~~~---~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d  139 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSS--------------WDKTLRLWDLRTG---TTYKRF-VGHQSEVYSVAFSPDNRQILSAGAE  139 (343)
T ss_dssp             CEEEEEECSSTTEEEEEE--------------TTSEEEEEETTSS---CEEEEE-ECCCSCEEEEEECSSTTEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEc--------------CCCcEEEEECCCC---cEEEEE-cCCCCcEEEEEECCCCCEEEEEcCC
Confidence            577777765433222221              2668999999753   445555 7899999999999999999999 99


Q ss_pred             CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc---------cEEEEEccCCeEEEEEccCCeeecccccc
Q 012721          239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---------NLLAYSSSRGFVRLVDMRQSALCDHSARI  309 (457)
Q Consensus       239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~---------~~l~~~~~dg~i~lwd~~~~~~~~~~~~~  309 (457)
                      +.|++||+. .......     ....+|...|.+++|+|++.         .+|++++.||.|++||... +..    . 
T Consensus       140 ~~i~~wd~~-~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~----~-  207 (343)
T 2xzm_R          140 REIKLWNIL-GECKFSS-----AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIR----Y-  207 (343)
T ss_dssp             SCEEEEESS-SCEEEEC-----CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEE----E-
T ss_pred             CEEEEEecc-CCceeee-----ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-cee----E-
Confidence            999999998 3332221     12357889999999999852         5899999999999999443 111    1 


Q ss_pred             ccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccc
Q 012721          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  388 (457)
Q Consensus       310 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  388 (457)
                                  .+.+|...|.+++|+|+|++|++|+. +.|++||+.....+...+. +...+               .
T Consensus       208 ------------~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v---------------~  259 (343)
T 2xzm_R          208 ------------TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTI---------------N  259 (343)
T ss_dssp             ------------EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCE---------------E
T ss_pred             ------------EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcE---------------E
Confidence                        23567789999999999999999875 9999999954344444443 22222               6


Q ss_pred             eEEEcCCCcEEEEEeCCCcEEEEecCCCCcee-eEEe-----------cCCCcceeeeeccCCcceecc
Q 012721          389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVE-----------AGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       389 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~-----------~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      +++|+|++.+++++ .|+.|++|++.+++... ..+.           +|...+.+++|+|++...++|
T Consensus       260 ~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg  327 (343)
T 2xzm_R          260 QIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG  327 (343)
T ss_dssp             EEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred             EEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence            89999999988755 57889999998873321 1333           788899999999999888773

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.4e-33  Score=260.31  Aligned_cols=300  Identities=17%  Similarity=0.254  Sum_probs=219.6

Q ss_pred             cccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCcccee-----eeeccCCc
Q 012721           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK-----TEFQSHEP  102 (457)
Q Consensus        29 ~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~  102 (457)
                      ..|.+.|++++|+| ++++||+|+.||.|+||++.+++.....                   .....     ....+|. 
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~-   99 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY-------------------TCKAVCSIGRDHPDVHR-   99 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE-------------------EECEEEEECTTCTTCCS-
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE-------------------eccccccccccccccCC-
Confidence            34999999999999 9999999999999999999887643000                   00000     0112455 


Q ss_pred             cccccccccccCcEEEEEEEecC-CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721          103 EFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (457)
Q Consensus       103 ~~~~~~~~~~~~~V~~v~~~~s~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (457)
                                 ..|.+++|  ++ ++.+|++++.|+.|++||+.+++.....                            
T Consensus       100 -----------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------  138 (408)
T 4a11_B          100 -----------YSVETVQW--YPHDTGMFTSSSFDKTLKVWDTNTLQTADVF----------------------------  138 (408)
T ss_dssp             -----------SCEEEEEE--CTTCTTCEEEEETTSEEEEEETTTTEEEEEE----------------------------
T ss_pred             -----------CcEEEEEE--ccCCCcEEEEEeCCCeEEEeeCCCCccceec----------------------------
Confidence                       88999999  56 7779999999999999999987655432                            


Q ss_pred             ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCEEEEe-CCCeEEEEEcCCCcceeeeee
Q 012721          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVD  257 (457)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  257 (457)
                                                        .+...+.++.++|   ++.+++++ .|+.|++||++ .+.....  
T Consensus       139 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~--  181 (408)
T 4a11_B          139 ----------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK-SGSCSHI--  181 (408)
T ss_dssp             ----------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS-SSCCCEE--
T ss_pred             ----------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC-Ccceeee--
Confidence                                              2455788888887   45589998 99999999998 4544443  


Q ss_pred             cCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (457)
Q Consensus       258 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  337 (457)
                           +.+|...|.+++|+|++..+|++++.||.|++||++++............ ...........+|...|.+++|+|
T Consensus       182 -----~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~  255 (408)
T 4a11_B          182 -----LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG-KKSQAVESANTAHNGKVNGLCFTS  255 (408)
T ss_dssp             -----ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT-CSCCCTTTSSCSCSSCEEEEEECT
T ss_pred             -----ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc-ccceeeccccccccCceeEEEEcC
Confidence                 57799999999999999347999999999999999886532211111111 111222334467889999999999


Q ss_pred             CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          338 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       338 ~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      ++++|++++. +.|++||++. ++....+..+.......       ..   ........+..+++++.|+.|++||+.++
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~i~v~d~~~~  324 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNSKK-------GL---KFTVSCGCSSEFVFVPYGSTIAVYTVYSG  324 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCCSS-------CC---CCEECCSSSSCEEEEEETTEEEEEETTTC
T ss_pred             CCCEEEEecCCCeEEEEECCC-Cccceeccccccccccc-------cc---eeEEecCCCceEEEEecCCEEEEEECcCC
Confidence            9999999875 9999999986 45444333222111000       00   11222334556777788999999999998


Q ss_pred             CceeeEEecCCCcceeeeeccCCcceec
Q 012721          417 SAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       417 ~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                       .....+.+|..+|.+++|+|++....+
T Consensus       325 -~~~~~~~~~~~~v~~~~~s~~~~~l~s  351 (408)
T 4a11_B          325 -EQITMLKGHYKTVDCCVFQSNFQELYS  351 (408)
T ss_dssp             -CEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             -cceeeeccCCCeEEEEEEcCCCCEEEE
Confidence             778899999999999999999987776

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.6e-34  Score=265.22  Aligned_cols=263  Identities=15%  Similarity=0.193  Sum_probs=203.9

Q ss_pred             cCCceEEEEECCC----CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           31 DVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        31 h~~~V~~~~~s~~----~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      |...|++++|+|+    +++|++|+.||.|++||+.+++                           .+..+.+|.     
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------------------------~~~~~~~~~-----  115 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ---------------------------CIKHYVGHG-----  115 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC---------------------------EEEEEESCC-----
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce---------------------------EeeeecCCC-----
Confidence            6788999999998    6799999999999999988765                           456778888     


Q ss_pred             cccccccCcEEEEEEEecC-CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          107 LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                             ..|.+++|  ++ ++.+|++++.|+.|++||+.+++.......                              
T Consensus       116 -------~~i~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------  156 (366)
T 3k26_A          116 -------NAINELKF--HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG------------------------------  156 (366)
T ss_dssp             -------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTTTEEEEEECS------------------------------
T ss_pred             -------CcEEEEEE--CCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc------------------------------
Confidence                   88999999  67 889999999999999999988765443210                              


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeec------
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM------  258 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~------  258 (457)
                                                  +.+|...|.+++|+|++++|+++ .|+.|++||++ .++....+..      
T Consensus       157 ----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~  207 (366)
T 3k26_A          157 ----------------------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN-SKRMMNAIKESYDYNP  207 (366)
T ss_dssp             ----------------------------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC-SHHHHHHHHHHHTCCG
T ss_pred             ----------------------------cccccCceeEEEECCCCCEEEEecCCCCEEEEECC-CCccccccceeEEecC
Confidence                                        14788899999999999999999 99999999998 3332221100      


Q ss_pred             ---------------CCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccce
Q 012721          259 ---------------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (457)
Q Consensus       259 ---------------~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (457)
                                     .......|...|.+++|+  + .+|++++.||.|++||+++.....   ..+..+.........+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~  281 (366)
T 3k26_A          208 NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDI---DKIKPSESNVTILGRF  281 (366)
T ss_dssp             GGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCG---GGCCTTCCCEEEEEEE
T ss_pred             CCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccc---cccccCCcchheeccc
Confidence                           001123488999999999  5 799999999999999998865321   1111111111223456


Q ss_pred             eccccceEEEEEccC--CCeEEEEec-CcEEEEeccCCCCc----eeEeeec--cccccccccccCCCCccccceEEEcC
Q 012721          324 TEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDSTP----VATFKIH--EHLRPKLCDLYNNDSIFDKFECSVSG  394 (457)
Q Consensus       324 ~~h~~~v~~~~~s~~--g~~l~s~~~-~~i~~wd~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~  394 (457)
                      ..|...|++++|+|+  +++|++++. |.|++||+.. +++    ...+..|  ...+               ++++|+|
T Consensus       282 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~  345 (366)
T 3k26_A          282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAI---------------RQTSFSR  345 (366)
T ss_dssp             ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSCE---------------EEEEECT
T ss_pred             cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC-CCCccccceEEcccccCCce---------------EEEEeCC
Confidence            778889999999999  999999875 9999999985 443    3356666  3333               6999999


Q ss_pred             CCcEEEEEeCCCcEEEEecCC
Q 012721          395 DGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       395 d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      ++++|++++.||.|++||+.+
T Consensus       346 ~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          346 DSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             TSSEEEEEETTSEEEEEEC--
T ss_pred             CCCeEEEEeCCCEEEEEEecC
Confidence            999999999999999999863

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.2e-32  Score=261.10  Aligned_cols=301  Identities=15%  Similarity=0.225  Sum_probs=234.0

Q ss_pred             ccccCCce-EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V-~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ...|.+.| .|+.+  +|++|++|+.||+|++||+.+++                           .+..+.+|.     
T Consensus       114 l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~---------------------------~~~~~~~h~-----  159 (445)
T 2ovr_B          114 LKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGK---------------------------CLRTLVGHT-----  159 (445)
T ss_dssp             EECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC---------------------------EEEECCCCS-----
T ss_pred             ecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCc---------------------------EEEEEcCCC-----
Confidence            34588765 65555  58999999999999999998765                           456788898     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             +.|.+++|  +  ++++++++.|++|++||+.+++....... ....+.++.+..  ..++..          
T Consensus       160 -------~~v~~~~~--~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~--~~l~s~----------  215 (445)
T 2ovr_B          160 -------GGVWSSQM--R--DNIIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMHLHE--KRVVSG----------  215 (445)
T ss_dssp             -------SCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEET--TEEEEE----------
T ss_pred             -------CCEEEEEe--c--CCEEEEEeCCCeEEEEECCcCcEEEEECC-CCCcEEEEEecC--CEEEEE----------
Confidence                   88999999  3  56999999999999999999877655543 234466666631  111111          


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                          ..++.+++||+...   +++..+ .+|...|.++++  ++.++++| .|+.|++||++ .+.....       +.+
T Consensus       216 ----s~dg~i~~wd~~~~---~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~-------~~~  277 (445)
T 2ovr_B          216 ----SRDATLRVWDIETG---QCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE-TETCLHT-------LQG  277 (445)
T ss_dssp             ----ETTSEEEEEESSSC---CEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG-GTEEEEE-------ECC
T ss_pred             ----eCCCEEEEEECCCC---cEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC-CCcEeEE-------ecC
Confidence                12568999998753   444555 689999999999  68889998 99999999998 5555544       567


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      |...|.+++|  ++ .++++++.||.|++||+++++..    ..             +.+|...+.++.++  +++|+++
T Consensus       278 ~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~----~~-------------~~~~~~~v~~~~~~--~~~l~~~  335 (445)
T 2ovr_B          278 HTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCI----HT-------------LTGHQSLTSGMELK--DNILVSG  335 (445)
T ss_dssp             CSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEE----EE-------------ECCCCSCEEEEEEE--TTEEEEE
T ss_pred             CCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEE----EE-------------EcCCcccEEEEEEe--CCEEEEE
Confidence            9999999999  66 89999999999999999987543    22             23456778887764  6788888


Q ss_pred             e-cCcEEEEeccCCCCceeEeee---ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceee
Q 012721          346 D-YMNLKLWDIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  421 (457)
Q Consensus       346 ~-~~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~  421 (457)
                      + ||.|++||++. ++.+..+..   |...+               ++++|+  +.+|++|+.||.|++||+.++ +...
T Consensus       336 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v~iwd~~~~-~~~~  396 (445)
T 2ovr_B          336 NADSTVKIWDIKT-GQCLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTVKLWDLKTG-EFIR  396 (445)
T ss_dssp             ETTSCEEEEETTT-CCEEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTC-CEEE
T ss_pred             eCCCeEEEEECCC-CcEEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeEEEEECCCC-ceee
Confidence            7 49999999986 788888876   43332               578884  689999999999999999999 5555


Q ss_pred             EE-----ecCCCcceeeeeccCCcceecc
Q 012721          422 TV-----EAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       422 ~~-----~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      .+     .+|.+++.+++|+|++...+.|
T Consensus       397 ~~~~~~~~~~~~~v~~~~~s~~~~~la~~  425 (445)
T 2ovr_B          397 NLVTLESGGSGGVVWRIRASNTKLVCAVG  425 (445)
T ss_dssp             EEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred             eeeccccCCCCceEEEEEecCCEEEEEEc
Confidence            55     5788999999999998877663

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.5e-32  Score=246.85  Aligned_cols=276  Identities=14%  Similarity=0.183  Sum_probs=213.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (457)
                      .+++|+||+++ +||+|. |++|+|||+.+++..                         ....+.+|.            
T Consensus        27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~-------------------------~~~~~~~~~------------   67 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL-------------------------QLLQMEQPG------------   67 (318)
T ss_dssp             TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred             cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence            45789999876 788765 899999999987642                         122344565            


Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|++++|  ++++++|++|+.|++|++|++.+++.....                                        
T Consensus        68 ~~V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~----------------------------------------  105 (318)
T 4ggc_A           68 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNM----------------------------------------  105 (318)
T ss_dssp             CCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEE----------------------------------------
T ss_pred             CeEEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEEe----------------------------------------
Confidence            78999999  789999999999999999999988655432                                        


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                                           .+|...+.++.+  ++..++++ .++.+++|+..........       +.+|...+..
T Consensus       106 ---------------------~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  155 (318)
T 4ggc_A          106 ---------------------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCG  155 (318)
T ss_dssp             ---------------------ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEE
T ss_pred             ---------------------cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE-------EcCccCceEE
Confidence                                 467777776655  56789999 9999999999855555443       5789999999


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE---EEec-C
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL---SRDY-M  348 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~---s~~~-~  348 (457)
                      +.+.+++ ++|++++.||.|++||+++++......             .....|...|.++.++|++..++   +++. +
T Consensus       156 ~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  221 (318)
T 4ggc_A          156 LRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPL-------------QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR  221 (318)
T ss_dssp             EEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCS-------------EEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred             EEEcCCC-CEEEEEecCcceeEEECCCCcccccce-------------eeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence            9999999 999999999999999998865321111             11234567899999999876544   3343 9


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe--CCCcEEEEecCCCCceeeEEecC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      .|++||... ........ +...+               ..+.|+|++..+++++  .|+.|++||+.++ +....+.+|
T Consensus       222 ~i~lwd~~~-~~~~~~~~-~~~~v---------------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH  283 (318)
T 4ggc_A          222 HIRIWNVCS-GACLSAVD-AHSQV---------------CSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGH  283 (318)
T ss_dssp             EEEEEETTT-CCEEEEEE-CSSCE---------------EEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCC
T ss_pred             EEEEEeccc-cccccccc-ceeee---------------eeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcCC
Confidence            999999975 44444433 33322               5899999999887655  7999999999999 788899999


Q ss_pred             CCcceeeeeccCCcceeccccccccccc
Q 012721          427 KNENRKPILQAAPRARRSSLSNLTRGLY  454 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~  454 (457)
                      .++|++++|+|++...++  ++.+...|
T Consensus       284 ~~~V~~l~~spdg~~l~S--~s~D~~v~  309 (318)
T 4ggc_A          284 TSRVLSLTMSPDGATVAS--AAADETLR  309 (318)
T ss_dssp             SSCEEEEEECTTSSCEEE--EETTTEEE
T ss_pred             CCCEEEEEEcCCCCEEEE--EecCCeEE
Confidence            999999999999998887  44444433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.2e-32  Score=249.04  Aligned_cols=240  Identities=16%  Similarity=0.240  Sum_probs=200.4

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|...|.+++|+|++++|++++.||.|++|++.+++..                         ....+.+|.        
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-------------------------~~~~~~~~~--------  141 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-------------------------IKAELTSSA--------  141 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-------------------------EEEEEECSS--------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-------------------------eeeecccCC--------
Confidence            58899999999999999999999999999999876531                         445677777        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..|.+++|  +++++++++++.|+.|++||+.+++.....                                    
T Consensus       142 ----~~i~~~~~--~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~------------------------------------  179 (337)
T 1gxr_A          142 ----PACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQTLVRQF------------------------------------  179 (337)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------------------------
T ss_pred             ----CceEEEEE--CCCCCEEEEEeCCCcEEEEeCCCCceeeee------------------------------------
Confidence                78999999  789999999999999999999887544321                                    


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                               ..|...|.+++|+|++++|+++ .|+.|++||++ .++....+        .+..
T Consensus       180 -------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~--------~~~~  225 (337)
T 1gxr_A          180 -------------------------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQH--------DFTS  225 (337)
T ss_dssp             -------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE--------ECSS
T ss_pred             -------------------------ecccCceEEEEECCCCCEEEEEecCCcEEEEECC-CCceEeee--------cCCC
Confidence                                     5688899999999999999999 99999999998 45554432        3667


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-  347 (457)
                      .+.+++|+|++ .+|++++.|+.|++||+++++..     .             +..|...|.+++|+|++++|++++. 
T Consensus       226 ~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~~-----~-------------~~~~~~~v~~~~~~~~~~~l~~~~~d  286 (337)
T 1gxr_A          226 QIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKY-----Q-------------LHLHESCVLSLKFAYCGKWFVSTGKD  286 (337)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEE-----E-------------ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCeE-----E-------------EcCCccceeEEEECCCCCEEEEecCC
Confidence            89999999999 99999999999999999886421     1             2446788999999999999999875 


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      +.|++||+.. ++.+... .|...+               .+++|+|++++|++++.||.|++|++.
T Consensus       287 g~i~~~~~~~-~~~~~~~-~~~~~v---------------~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          287 NLLNAWRTPY-GASIFQS-KESSSV---------------LSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             SEEEEEETTT-CCEEEEE-ECSSCE---------------EEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             CcEEEEECCC-CeEEEEe-cCCCcE---------------EEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            9999999986 5555443 344433               689999999999999999999999973

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.2e-32  Score=248.01  Aligned_cols=239  Identities=14%  Similarity=0.143  Sum_probs=188.9

Q ss_pred             eeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccccc
Q 012721           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (457)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (457)
                      ..+.+|.            +.|.+++|  +++|++|++++.|++|++|++.++..                         
T Consensus         3 ~~~~~h~------------~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~-------------------------   43 (297)
T 2pm7_B            3 VIANAHN------------EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETH-------------------------   43 (297)
T ss_dssp             EECCSCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCB-------------------------
T ss_pred             eeccCCc------------CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCc-------------------------
Confidence            3567787            88999999  79999999999999999999875321                         


Q ss_pred             ccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcc
Q 012721          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQ  251 (457)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~  251 (457)
                                                       +++..+ .+|...|.+++|++  ++++|++| .|++|++||++. +.
T Consensus        44 ---------------------------------~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~-~~   88 (297)
T 2pm7_B           44 ---------------------------------KLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN-GR   88 (297)
T ss_dssp             ---------------------------------CCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS-SC
T ss_pred             ---------------------------------EEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC-Cc
Confidence                                             111222 68999999999986  38999999 999999999983 32


Q ss_pred             eeeeeecCCCcccCCCCceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721          252 CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      ...+     ..+.+|...|.+++|+|+  + .+|++++.|+.|++||++.+...    .           ...+.+|...
T Consensus        89 ~~~~-----~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~----~-----------~~~~~~h~~~  147 (297)
T 2pm7_B           89 WSQI-----AVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTT----S-----------PIIIDAHAIG  147 (297)
T ss_dssp             BCCC-----EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCB----C-----------CEEEECCSSC
T ss_pred             eEEE-----EEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCce----e-----------eeeeecccCc
Confidence            1111     125679999999999997  6 89999999999999999875311    0           1124567889


Q ss_pred             eEEEEEccC-------------CCeEEEEe-cCcEEEEeccCCCC----ceeEeeeccccccccccccCCCCccccceEE
Q 012721          330 ISDIKFAND-------------GQHLLSRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECS  391 (457)
Q Consensus       330 v~~~~~s~~-------------g~~l~s~~-~~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  391 (457)
                      |.+++|+|+             +++|++|+ |+.|++||++. ++    ....+.+|...+               .+++
T Consensus       148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~V---------------~~v~  211 (297)
T 2pm7_B          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDWV---------------RDVA  211 (297)
T ss_dssp             EEEEEECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSCE---------------EEEE
T ss_pred             cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCce---------------EEEE
Confidence            999999997             57899887 49999999975 33    456777888765               6999


Q ss_pred             EcCCC---cEEEEEeCCCcEEEEecCCCCc--eeeEE--ecCCCcceeeeeccCCcceec
Q 012721          392 VSGDG---LHFATGSYSNLLRIFSHGVGSA--GGITV--EAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       392 ~s~d~---~~l~s~~~dg~i~iw~~~~~~~--~~~~~--~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      |+|++   .+|++++.|++|+|||+.++..  ....+  ..|...+.+++|+|++...++
T Consensus       212 ~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las  271 (297)
T 2pm7_B          212 WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  271 (297)
T ss_dssp             ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred             ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEE
Confidence            99984   8999999999999999987521  12233  578899999999999988776

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.6e-32  Score=261.13  Aligned_cols=292  Identities=17%  Similarity=0.266  Sum_probs=214.4

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|...|.|++|  ++++|++|+.||.|++||+.+++                           ....+.+|.        
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~---------------------------~~~~~~~h~--------  173 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHT--------  173 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCS--------
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe---------------------------EEEEEcCCC--------
Confidence            36678999988  69999999999999999988765                           456788898        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          +.|.+++|    ++++|++|+.||.|++||+.+++....... ....+.++.|..  +.++..             
T Consensus       174 ----~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~-------------  229 (435)
T 1p22_A          174 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRFNN--GMMVTC-------------  229 (435)
T ss_dssp             ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEECC-CCSCEEEEECCT--TEEEEE-------------
T ss_pred             ----CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCcEEEEEEcC--CEEEEe-------------
Confidence                88999988    567999999999999999999887665543 234466666641  111111             


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                       ..++.+++||+...........+ .+|...|.+++|  +++++++| .|+.|++||++ .++....       +.+|..
T Consensus       230 -s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~-~~~~~~~-------~~~~~~  297 (435)
T 1p22_A          230 -SKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS-TCEFVRT-------LNGHKR  297 (435)
T ss_dssp             -ETTSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-TCCEEEE-------EECCSS
T ss_pred             -eCCCcEEEEeCCCCCCceeeeEe-cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC-cCcEEEE-------EcCCCC
Confidence             13568999999865444333444 789999999999  78899999 99999999998 5555544       567899


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-  347 (457)
                      .|.+++++  + .++++|+.||.|++||+++++..    ..             +.+|...|.+++|  ++++|++|+. 
T Consensus       298 ~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~~----~~-------------~~~h~~~v~~~~~--~~~~l~sg~~d  355 (435)
T 1p22_A          298 GIACLQYR--D-RLVVSGSSDNTIRLWDIECGACL----RV-------------LEGHEELVRCIRF--DNKRIVSGAYD  355 (435)
T ss_dssp             CEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEE----EE-------------ECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred             cEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCEE----EE-------------EeCCcCcEEEEEe--cCCEEEEEeCC
Confidence            99999984  4 78999999999999999987533    22             3456788999999  6889998875 


Q ss_pred             CcEEEEeccCCCC---------ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721          348 MNLKLWDIRMDST---------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  418 (457)
Q Consensus       348 ~~i~~wd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~  418 (457)
                      |.|++||+.. +.         .+..+.+|...+               ++++|  ++.+|++++.||.|++||+.+...
T Consensus       356 g~i~vwd~~~-~~~~~~~~~~~~~~~~~~h~~~v---------------~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          356 GKIKVWDLVA-ALDPRAPAGTLCLRTLVEHSGRV---------------FRLQF--DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             SCEEEEEHHH-HTSTTSCTTTTEEEEECCCSSCC---------------CCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred             CcEEEEECCC-CCCccccccchheeeccCCCCCe---------------EEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence            9999999964 33         577777887765               67888  788999999999999999988732


Q ss_pred             eeeEEecCCCcceeeeec
Q 012721          419 GGITVEAGKNENRKPILQ  436 (457)
Q Consensus       419 ~~~~~~~~~~~v~~~~~~  436 (457)
                      . . ......+...+.|.
T Consensus       418 ~-~-~~~~~~~~~~~~~~  433 (435)
T 1p22_A          418 A-Q-AEPPRSPSRTYTYI  433 (435)
T ss_dssp             ------------------
T ss_pred             c-c-cCCCCCCccceeee
Confidence            2 2 22233444444443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-32  Score=258.84  Aligned_cols=282  Identities=13%  Similarity=0.125  Sum_probs=213.1

Q ss_pred             ceEEEEECCCCCEE-EEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        34 ~V~~~~~s~~~~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      ....++++|+...+ ++++.||.|+||++......                       ...+..+.+|.           
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~-----------   81 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHT-----------   81 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCS-----------
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCC-----------
Confidence            44568899877544 45788999999998654321                       11334577888           


Q ss_pred             cCcEEEEEEEecC-CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          113 EEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       113 ~~~V~~v~~~~s~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                       +.|.+++|  ++ ++.+|++++.|+.|++|++.++.....                                       
T Consensus        82 -~~V~~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~---------------------------------------  119 (402)
T 2aq5_A           82 -APVLDIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLP---------------------------------------  119 (402)
T ss_dssp             -SCEEEEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSC---------------------------------------
T ss_pred             -CCEEEEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCccc---------------------------------------
Confidence             88999999  67 889999999999999999987643210                                       


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                    ..+++..+ .+|...|.+++|+|++ .+|+++ .|+.|++||++ .++....+.     ..+|...
T Consensus       120 --------------~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-----~~~~~~~  178 (402)
T 2aq5_A          120 --------------LREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG-TGAAVLTLG-----PDVHPDT  178 (402)
T ss_dssp             --------------BCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT-TTEEEEEEC-----TTTCCSC
T ss_pred             --------------cCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC-CCCccEEEe-----cCCCCCc
Confidence                          00122222 6899999999999998 689998 99999999999 555554420     1679999


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc-eEEEEEccCCCeEEEE---
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS-ISDIKFANDGQHLLSR---  345 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~s~---  345 (457)
                      |.+++|+|++ .+|++++.||.|++||+++++..    ..+.            .+|.+. +.++.|+|++++|++|   
T Consensus       179 v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~l~~g~~~  241 (402)
T 2aq5_A          179 IYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVV----AEKD------------RPHEGTRPVHAVFVSEGKILTTGFSR  241 (402)
T ss_dssp             EEEEEECTTS-SCEEEEETTSEEEEEETTTTEEE----EEEE------------CSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred             eEEEEECCCC-CEEEEEecCCcEEEEeCCCCcee----eeec------------cCCCCCcceEEEEcCCCcEEEEeccC
Confidence            9999999999 99999999999999999987643    2220            223343 8899999999999998   


Q ss_pred             e-cCcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcCCCcEEEE-EeCCCcEEEEecCCCCceeeE
Q 012721          346 D-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGSAGGIT  422 (457)
Q Consensus       346 ~-~~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~~~dg~i~iw~~~~~~~~~~~  422 (457)
                      + ++.|++||++....++.... .+...+               ..++|+|++++|++ |+.||.|++|++.+++.....
T Consensus       242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~  306 (402)
T 2aq5_A          242 MSERQVALWDTKHLEEPLSLQELDTSSGV---------------LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY  306 (402)
T ss_dssp             TCCEEEEEEETTBCSSCSEEEECCCCSSC---------------EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred             CCCceEEEEcCccccCCceEEeccCCCce---------------eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence            3 59999999986444344433 233322               68999999999975 557999999999998543555


Q ss_pred             Eec--CCCcceeeeeccCCcceec
Q 012721          423 VEA--GKNENRKPILQAAPRARRS  444 (457)
Q Consensus       423 ~~~--~~~~v~~~~~~p~~~~~~~  444 (457)
                      +..  |..++.+++|+|++....+
T Consensus       307 l~~~~~~~~v~~~~~sp~~~~~~s  330 (402)
T 2aq5_A          307 LSMFSSKESQRGMGYMPKRGLEVN  330 (402)
T ss_dssp             EEEECCSSCCSEEEECCGGGSCGG
T ss_pred             ecccccCCcccceEEeccccccee
Confidence            554  4599999999999877665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-33  Score=281.84  Aligned_cols=257  Identities=15%  Similarity=0.215  Sum_probs=203.9

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|++++|++|+.||.|+||++.++..                         ..+..+.+|.       
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-------------------------~~~~~l~~h~-------   53 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------------KLIDTLTGHE-------   53 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-------------------------EEEEEECCCS-------
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-------------------------ccceeccCCc-------
Confidence            35999999999999999999999999999999985432                         3567788998       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ++|.+++|.|..++++|++++.||.|++||+.+++......                                  
T Consensus        54 -----~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~----------------------------------   94 (753)
T 3jro_A           54 -----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV----------------------------------   94 (753)
T ss_dssp             -----SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE----------------------------------
T ss_pred             -----CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc----------------------------------
Confidence                 88999999533338999999999999999998875332211                                  


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                               ..+|...|.+++|+|+  +..+++| .|+.|++||++........      .+.+
T Consensus        95 -------------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~------~~~~  143 (753)
T 3jro_A           95 -------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDA  143 (753)
T ss_dssp             -------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE------EEEC
T ss_pred             -------------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee------Eeec
Confidence                                     1578899999999999  9999999 9999999999843222211      2567


Q ss_pred             CCCceEEEEEec-------------CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721          266 LTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (457)
Q Consensus       266 ~~~~i~~v~~~p-------------~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  332 (457)
                      |...|.+++|+|             ++ .+|++|+.||.|++||++++......             ...+.+|...|++
T Consensus       144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~-------------~~~~~~h~~~V~~  209 (753)
T 3jro_A          144 HAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVL-------------ESTLEGHSDWVRD  209 (753)
T ss_dssp             CSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEE-------------EEEECCCSSCEEE
T ss_pred             CCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCccccee-------------eeeecCCCCcEEE
Confidence            899999999999             46 89999999999999999876321111             1224567899999


Q ss_pred             EEEccC---CCeEEEEec-CcEEEEeccCCCC----ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721          333 IKFAND---GQHLLSRDY-MNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (457)
Q Consensus       333 ~~~s~~---g~~l~s~~~-~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  404 (457)
                      ++|+|+   +++|++++. |.|++||++....    .......|...+               ++++|+|++.+|++++.
T Consensus       210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~l~~spdg~~l~s~s~  274 (753)
T 3jro_A          210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGG  274 (753)
T ss_dssp             EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC---------------CCEEECTTTCCEEEECS
T ss_pred             EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce---------------EEEEEcCCCCEEEEEcC
Confidence            999999   899999875 9999999976221    122222343332               68999999999999999


Q ss_pred             CCcEEEEecCCC
Q 012721          405 SNLLRIFSHGVG  416 (457)
Q Consensus       405 dg~i~iw~~~~~  416 (457)
                      ||.|++|++.++
T Consensus       275 Dg~I~vwd~~~~  286 (753)
T 3jro_A          275 DNKVTLWKENLE  286 (753)
T ss_dssp             SSCEECCBCCSS
T ss_pred             CCEEEEEecCCC
Confidence            999999999865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=253.35  Aligned_cols=256  Identities=16%  Similarity=0.208  Sum_probs=200.2

Q ss_pred             cccCCceEEEEECCC---CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           29 LQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~---~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ..|.+.|.+++|+|+   +++|++|+.||.|++|++.+++.                          .+..+.+|.    
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~----  111 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM--------------------------PVYSVKGHK----  111 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS--------------------------CSEEECCCS----
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc--------------------------cEEEEEecc----
Confidence            368999999999998   69999999999999999987662                          345678888    


Q ss_pred             ccccccccCcEEEEEEEe----cCCCCEEEEeeCCCeEEEEEecccc-eeEEEeecCCCceeeeeeccccccccccCCCC
Q 012721          106 YLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~----s~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (457)
                              ..|.++.|.+    ++++++|++++.|+.|++||+.++. .........                       
T Consensus       112 --------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----------------------  160 (357)
T 3i2n_A          112 --------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ-----------------------  160 (357)
T ss_dssp             --------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT-----------------------
T ss_pred             --------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC-----------------------
Confidence                    8899998754    5789999999999999999998865 222211000                       


Q ss_pred             CceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEE----eCCCCCEEEEe-CCCeEEEEEcCCCcceeee
Q 012721          181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSIS----NNSDCETFVSA-DDLRINLWNLEISDQCFNI  255 (457)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~----~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  255 (457)
                                                        ..+...+.+++    |+|++++|+++ .|+.|++||++ .++... 
T Consensus       161 ----------------------------------~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-  204 (357)
T 3i2n_A          161 ----------------------------------GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR-NMALRW-  204 (357)
T ss_dssp             ----------------------------------TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT-TTEEEE-
T ss_pred             ----------------------------------CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc-cCceee-
Confidence                                              12244788888    78999999999 99999999998 444432 


Q ss_pred             eecCCCcccCCCCceEEEEEec---CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721          256 VDMKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (457)
Q Consensus       256 ~~~~~~~~~~~~~~i~~v~~~p---~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  332 (457)
                             ...|...|.+++|+|   ++ .+|++++.||.|++||+++++..    ..+..        ..+.+|...|++
T Consensus       205 -------~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~--------~~~~~~~~~v~~  264 (357)
T 3i2n_A          205 -------ETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPT----KGFAS--------VSEKAHKSTVWQ  264 (357)
T ss_dssp             -------EEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETT----TEEEE--------EEEECCSSCEEE
T ss_pred             -------ecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcc----cceee--------eccCCCcCCEEE
Confidence                   345778999999999   88 99999999999999999886432    11111        013467889999


Q ss_pred             EEEccCCC-eEEEEec-CcEEEEeccCCC------------------CceeEeeeccccccccccccCCCCccccceEEE
Q 012721          333 IKFANDGQ-HLLSRDY-MNLKLWDIRMDS------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  392 (457)
Q Consensus       333 ~~~s~~g~-~l~s~~~-~~i~~wd~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  392 (457)
                      ++|+|+++ +|++++. |.|++||++...                  +.+..+..|...+               ++++|
T Consensus       265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~  329 (357)
T 3i2n_A          265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI---------------SSLDW  329 (357)
T ss_dssp             EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE---------------EEEEE
T ss_pred             EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe---------------eEEEE
Confidence            99999998 7888765 999999997522                  2355566666654               79999


Q ss_pred             cCCCcEEE-EEeCCCcEEEEecCCC
Q 012721          393 SGDGLHFA-TGSYSNLLRIFSHGVG  416 (457)
Q Consensus       393 s~d~~~l~-s~~~dg~i~iw~~~~~  416 (457)
                      +|++++|+ +++.||.|++||+.+.
T Consensus       330 s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          330 SPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             CSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             cCCCCeEEEEecCCCcEEEEECCCc
Confidence            99999998 8999999999999876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.6e-33  Score=253.06  Aligned_cols=234  Identities=13%  Similarity=0.130  Sum_probs=185.5

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      +.|++++|  ++++++|++++.|++|++||+.++.......                                       
T Consensus        14 ~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~---------------------------------------   52 (316)
T 3bg1_A           14 DMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQILIAD---------------------------------------   52 (316)
T ss_dssp             CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEEEEEEE---------------------------------------
T ss_pred             CeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCcEEEEE---------------------------------------
Confidence            88999999  7899999999999999999998764322111                                       


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                          +.+|...|.+++|++  ++++|++| .|++|++||++ .+.....     ..+.+|...|
T Consensus        53 --------------------l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~-~~~~~~~-----~~~~~h~~~V  106 (316)
T 3bg1_A           53 --------------------LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE-NGTWEKS-----HEHAGHDSSV  106 (316)
T ss_dssp             --------------------EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS-SSCCCEE-----EEECCCSSCC
T ss_pred             --------------------EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC-CCcceEE-----EEccCCCCce
Confidence                                168999999999986  48899999 99999999998 3321111     1257899999


Q ss_pred             EEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC----------
Q 012721          271 TSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----------  338 (457)
Q Consensus       271 ~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----------  338 (457)
                      .+++|+|+  + .+|++|+.|++|++||++.+...    ..          ...+.+|...|.+++|+|+          
T Consensus       107 ~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~----~~----------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  171 (316)
T 3bg1_A          107 NSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW----EV----------KKINNAHTIGCNAVSWAPAVVPGSLIDHP  171 (316)
T ss_dssp             CEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE----EE----------CCBTTSSSSCBCCCEECCCCCC------C
T ss_pred             EEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc----ce----------eeeeccccCCcceEEEccccCCccccccc
Confidence            99999998  6 89999999999999999875211    00          0113456778999999997          


Q ss_pred             -------CCeEEEEe-cCcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEEcCCC----cEEEEEeC
Q 012721          339 -------GQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG----LHFATGSY  404 (457)
Q Consensus       339 -------g~~l~s~~-~~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~----~~l~s~~~  404 (457)
                             +++|++|+ |+.|++||++...  +++..+.+|...+               .+++|+|++    .+|++++.
T Consensus       172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V---------------~~v~~sp~~~~~~~~las~s~  236 (316)
T 3bg1_A          172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV---------------RDVAWAPSIGLPTSTIASCSQ  236 (316)
T ss_dssp             CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE---------------EEEECCCCSSCSCCEEEEEET
T ss_pred             cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce---------------EEEEecCCCCCCCceEEEEcC
Confidence                   46889887 4999999996422  3566777887765               699999986    89999999


Q ss_pred             CCcEEEEecCCC---CceeeEEecCCCcceeeeeccCCcceec
Q 012721          405 SNLLRIFSHGVG---SAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       405 dg~i~iw~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      |++|++|++.+.   ......+..|..+|.+++|+|++...++
T Consensus       237 D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las  279 (316)
T 3bg1_A          237 DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAV  279 (316)
T ss_dssp             TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEE
T ss_pred             CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEE
Confidence            999999999873   1234566789999999999999987776

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.1e-32  Score=268.74  Aligned_cols=299  Identities=11%  Similarity=0.132  Sum_probs=210.4

Q ss_pred             ccCC---ceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee-c---cCC
Q 012721           30 QDVD---IVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-Q---SHE  101 (457)
Q Consensus        30 ~h~~---~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~  101 (457)
                      .|.+   .|.+++|+|+ +++|++++.||.|++||+.+++.                           +..+ .   +|.
T Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~~~~~~~  253 (615)
T 1pgu_A          201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF---------------------------LKYIEDDQEPVQ  253 (615)
T ss_dssp             SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE---------------------------EEECCBTTBCCC
T ss_pred             ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE---------------------------eEEecccccccC
Confidence            3777   9999999999 99999999999999999987663                           3455 4   677


Q ss_pred             ccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecC---CCceeeeeeccccccccccCC
Q 012721          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH---FPFVSSENTLLAEKNFMNEHN  178 (457)
Q Consensus       102 ~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  178 (457)
                                  ..|.+++|  + ++.+|++++.|+.|++||+.+++.........   ...+.++.+. ....++....
T Consensus       254 ------------~~v~~~~~--~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~  317 (615)
T 1pgu_A          254 ------------GGIFALSW--L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSL  317 (615)
T ss_dssp             ------------SCEEEEEE--S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEET
T ss_pred             ------------CceEEEEE--c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEEC
Confidence                        88999999  7 89999999999999999999887766665442   2334444443 2222222111


Q ss_pred             CCCceec-----------------------cC-CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE
Q 012721          179 PPSFAHG-----------------------YH-LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV  234 (457)
Q Consensus       179 ~~~~~~~-----------------------~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  234 (457)
                      .....+.                       ++ ..-..++.+++|+..      ++.   .+|...|.+++| +++..|+
T Consensus       318 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~------~~~---~~~~~~v~~~~~-~~~~~l~  387 (615)
T 1pgu_A          318 DGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS------SMH---QDHSNLIVSLDN-SKAQEYS  387 (615)
T ss_dssp             TSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT------EEE---CCCCSCEEEEEC-CSTTCCE
T ss_pred             CCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch------hhc---CcccCceEEEEE-CCCcEEE
Confidence            1100000                       00 000123355555543      111   345666666666 3355555


Q ss_pred             Ee-CCCeEEEEEcCCC--------------------------------------------------------------cc
Q 012721          235 SA-DDLRINLWNLEIS--------------------------------------------------------------DQ  251 (457)
Q Consensus       235 ~~-~d~~i~iwd~~~~--------------------------------------------------------------~~  251 (457)
                      ++ .|+.|++||+...                                                              ..
T Consensus       388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~  467 (615)
T 1pgu_A          388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN  467 (615)
T ss_dssp             EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred             EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence            55 6666666665420                                                              01


Q ss_pred             eeeeeecCC-----CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec-
Q 012721          252 CFNIVDMKP-----SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-  325 (457)
Q Consensus       252 ~~~~~~~~~-----~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  325 (457)
                      .+.+++...     ..+.+|...|++++|+|++ ++|++++.||.|++||+.+++..    ..             +.+ 
T Consensus       468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~----~~-------------~~~~  529 (615)
T 1pgu_A          468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVK----TS-------------RWAF  529 (615)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EC-------------CSCC
T ss_pred             eEEEEECCCccccccccCCccCceEEEEECCCC-CEEEEcCCCCeEEEeeCCCCcce----eE-------------eecC
Confidence            111111111     2356789999999999999 99999999999999999987643    11             223 


Q ss_pred             cccceEEEEEcc----------CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC
Q 012721          326 IIASISDIKFAN----------DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (457)
Q Consensus       326 h~~~v~~~~~s~----------~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  394 (457)
                      |...|++++|+|          ++++|++++. +.|++||+....+++..+.+|...+               ++++|+|
T Consensus       530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v---------------~~l~~s~  594 (615)
T 1pgu_A          530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV---------------NNLLWET  594 (615)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE---------------EEEEEEE
T ss_pred             CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccce---------------EEEEEcC
Confidence            678999999999          9999999875 9999999986447888888887765               7999999


Q ss_pred             CCcEEEEEeCCCcEEEEecCC
Q 012721          395 DGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       395 d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      +++ |++++.||.|++|++.+
T Consensus       595 ~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          595 PST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             TTE-EEEEETTSCEEEEEEC-
T ss_pred             CCC-eEEecCCceEEEEeeec
Confidence            999 99999999999999875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-33  Score=266.38  Aligned_cols=299  Identities=9%  Similarity=0.074  Sum_probs=200.5

Q ss_pred             ccCCceEEEEECCC------CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcc
Q 012721           30 QDVDIVSAIEFDKT------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (457)
Q Consensus        30 ~h~~~V~~~~~s~~------~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (457)
                      .|.+.|.+++|+|+      +.+||+|+.||+|+|||+..+.....  .+              .........+.+|.  
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~--~~--------------~~~~~p~~~l~~h~--  266 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH--VF--------------KMCEKPSLTLSLAD--  266 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS--EE--------------ECCCSCSEEECCTT--
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc--cc--------------eeecCceEEEEcCC--
Confidence            36789999999997      57999999999999999976642100  00              00011234577887  


Q ss_pred             ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccccee-EEEeecCCCceeeee-eccccc-cccccCCCC
Q 012721          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSEN-TLLAEK-NFMNEHNPP  180 (457)
Q Consensus       104 ~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~  180 (457)
                                ..|.+++|  +++ ..|++|+.||+|++||+.++... .... .....|.+++ ...+++ .++.+..  
T Consensus       267 ----------~~v~sv~~--s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~laS~S--  330 (524)
T 2j04_B          267 ----------SLITTFDF--LSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTVVSTVA--  330 (524)
T ss_dssp             ----------TCEEEEEE--SSS-SEEEEEETTSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCEEEEEE--
T ss_pred             ----------CCEEEEEe--cCC-CeEEEEeCCCEEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeEEEEec--
Confidence                      88999999  454 48999999999999999876432 2222 2344577774 223333 3332221  


Q ss_pred             CceeccCCccccccceEEEeccCccccccceeeccCCCC--CeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeee
Q 012721          181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD  257 (457)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  257 (457)
                                 .++.+++||+...   ++...+ .+|..  .|.+++|+|+++.++++ .|++|++||++ .+.+...  
T Consensus       331 -----------~D~tvklWD~~~~---~~~~~~-~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~-~~~~~~~--  392 (524)
T 2j04_B          331 -----------VDGYFYIFNPKDI---ATTKTT-VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR-AAFAVHP--  392 (524)
T ss_dssp             -----------TTSEEEEECGGGH---HHHCEE-EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT-CTTCCEE--
T ss_pred             -----------cCCeEEEEECCCC---Cccccc-ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc-cccccee--
Confidence                       3668999999743   333333 34543  58899999999999998 99999999998 4544433  


Q ss_pred             cCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (457)
Q Consensus       258 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  337 (457)
                           +.+|...|++++|+|++ ++|++|+.||+|++||+..+        ++..+.....     ..+...+++++|+|
T Consensus       393 -----l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~--------~~~~~~~~~~-----~~~~~~v~~v~~sp  453 (524)
T 2j04_B          393 -----LVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARR--------LLHGIKNSSA-----TQKSLRLWKWDYSI  453 (524)
T ss_dssp             -----EEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSS--------TTTCC-----------CCCCEEEECBCCS
T ss_pred             -----eecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHh--------hccccccCcc-----ceeeeEEEEeccCC
Confidence                 56799999999999999 99999999999999998653        1111000000     00123578999999


Q ss_pred             CCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc---EEEEEeCCCcEEEEecC
Q 012721          338 DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL---HFATGSYSNLLRIFSHG  414 (457)
Q Consensus       338 ~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---~l~s~~~dg~i~iw~~~  414 (457)
                      +++.+.. .+ .+++|+....+..+..+.+|...+               .+++|+|++.   +||+|+.||.|+||++.
T Consensus       454 ~g~~~~~-~~-~~~~~~~~~~g~~~~~l~gh~~~V---------------~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          454 KDDKYRI-DS-SYEVYPLTVNDVSKAKIDAHGINI---------------TCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             SSCEEEE-CC-CCCCCC-------------CCCSC---------------CCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             CCCeEEc-cC-CceecccccCCcceeeecCCCceE---------------EEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence            9986533 22 233443322256777888888765               6899999954   99999999999999987


Q ss_pred             CC
Q 012721          415 VG  416 (457)
Q Consensus       415 ~~  416 (457)
                      -.
T Consensus       517 ~~  518 (524)
T 2j04_B          517 LE  518 (524)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.8e-31  Score=271.05  Aligned_cols=324  Identities=15%  Similarity=0.171  Sum_probs=238.3

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|.+++|+|++++||+|+.||.|+||++.+++                           .+..+.+|.        
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---------------------------~~~~~~~~~--------   97 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE---------------------------KVVDFEAHP--------   97 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC---------------------------EEEEEECCS--------
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEecCC--------
Confidence            489999999999999999999999999999998776                           456778888        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          +.|.+++|  ++++.+|++++.|+.|++|++.++.............+.+++|++.++..+....           
T Consensus        98 ----~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-----------  160 (814)
T 3mkq_A           98 ----DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-----------  160 (814)
T ss_dssp             ----SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE-----------
T ss_pred             ----CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe-----------
Confidence                88999999  7899999999999999999999874333333334556888888874444333221           


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                        .++.+++|++...   .....+...+...+.+++|+|  ++.+|+++ .|+.|++||+. .+.....       +.+|
T Consensus       161 --~dg~v~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~-------~~~~  227 (814)
T 3mkq_A          161 --LDRTVKVWSLGQS---TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVAT-------LEGH  227 (814)
T ss_dssp             --TTSEEEEEETTCS---SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT-TTEEEEE-------EECC
T ss_pred             --CCCeEEEEECCCC---cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC-CCcEEEE-------EcCC
Confidence              2568999998653   233333345668999999999  99999999 99999999998 5555544       5678


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC--eEEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLS  344 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s  344 (457)
                      ...|.+++|+|++ .+|++++.||.|++||+.+++..    ..+             ..|...+.+++|+|++.  ++++
T Consensus       228 ~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~-------------~~~~~~v~~~~~~~~~~~~~~~~  289 (814)
T 3mkq_A          228 MSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVE----KTL-------------NVGLERSWCIATHPTGRKNYIAS  289 (814)
T ss_dssp             SSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEE----EEE-------------CCSSSSEEEEEECTTCGGGEEEE
T ss_pred             CCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEe-------------ecCCCcEEEEEEccCCCceEEEE
Confidence            8999999999999 99999999999999999886533    222             33457899999999987  5777


Q ss_pred             EecCcEEEEeccCCCCceeEeeeccccccc-----------------ccc------c-----cCCCCccccceEEEcCCC
Q 012721          345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPK-----------------LCD------L-----YNNDSIFDKFECSVSGDG  396 (457)
Q Consensus       345 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~-----------------~~~------~-----~~~~~~~~v~~~~~s~d~  396 (457)
                      +.++.+.+|++.. ......+......+..                 ...      .     ........+.+++|+|+|
T Consensus       290 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  368 (814)
T 3mkq_A          290 GFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG  368 (814)
T ss_dssp             EETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS
T ss_pred             EeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC
Confidence            8888899999864 3322222111000000                 000      0     000011124689999999


Q ss_pred             cEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          397 LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       397 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ++|++++ |+.+.+|++... .     ..+.+++.+++|+|++...+.
T Consensus       369 ~~la~~~-~~~~~i~~~~~~-~-----~~~~~~i~~~~~spdg~~la~  409 (814)
T 3mkq_A          369 RFVTVVG-DGEYVIYTALAW-R-----NKAFGKCQDFVWGPDSNSYAL  409 (814)
T ss_dssp             SEEEEEE-TTEEEEEETTTT-E-----EEEEEECSEEEECTTSSCEEE
T ss_pred             CEEEEec-CCEEEEEECccc-c-----ccCCCceEEEEEeCCCCeEEE
Confidence            9999988 899999997644 1     122456778888888776655

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.1e-31  Score=251.01  Aligned_cols=253  Identities=13%  Similarity=0.090  Sum_probs=190.1

Q ss_pred             ccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        30 ~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .|.+.|.+++|+| ++++|++++.|+.|++||+.+...                         ..+....+|.       
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------------------~~~~~~~~~~-------  163 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-------------------------QVFAKTDSWD-------  163 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-------------------------EEEECCCCSS-------
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-------------------------EEEeccCCCC-------
Confidence            4899999999999 789999999999999999985332                         1112223333       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++|  ++++.+|++++.|+.|++||+. ++....                                    
T Consensus       164 -----~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~-~~~~~~------------------------------------  199 (383)
T 3ei3_B          164 -----YWYCCVDV--SVSRQMLATGDSTGRLLLLGLD-GHEIFK------------------------------------  199 (383)
T ss_dssp             -----CCEEEEEE--ETTTTEEEEEETTSEEEEEETT-SCEEEE------------------------------------
T ss_pred             -----CCeEEEEE--CCCCCEEEEECCCCCEEEEECC-CCEEEE------------------------------------
Confidence                 77999999  6899999999999999999984 332221                                    


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCC---cceeeeeecCCCcc
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEIS---DQCFNIVDMKPSNM  263 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~  263 (457)
                                              + .+|...|.+++|+|+++ +|+++ .|+.|++||++..   ......        
T Consensus       200 ------------------------~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------  246 (383)
T 3ei3_B          200 ------------------------E-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE--------  246 (383)
T ss_dssp             ------------------------E-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE--------
T ss_pred             ------------------------e-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE--------
Confidence                                    1 57889999999999998 88998 9999999999842   233332        


Q ss_pred             cCCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeecccccccccccccc----CcccceeccccceEEEEEccC
Q 012721          264 DDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEIIASISDIKFAND  338 (457)
Q Consensus       264 ~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~s~~  338 (457)
                      .+|...|.+++|+| ++ .+|++++.|+.|++||+++++..    ..+..|....    ............+..++|+|+
T Consensus       247 ~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d  321 (383)
T 3ei3_B          247 MPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD  321 (383)
T ss_dssp             EECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC
T ss_pred             ecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEeccCCCCceEEEecCC
Confidence            25889999999999 98 99999999999999999987543    2222211000    000000111245666788888


Q ss_pred             CCeEEEEe-cCcEEEEeccCCCCceeEeeecc--ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721          339 GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       339 g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      +++  +++ |+.|++||+.+ ++.+..+.++.  ..+               ..++|+|++++|++|+ |+.|++||+++
T Consensus       322 g~~--s~s~d~~i~iwd~~~-~~~~~~l~~~~~~~~~---------------~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          322 DQL--LLNDKRTIDIYDANS-GGLVHQLRDPNAAGII---------------SLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TTT--CTTCCCCEEEEETTT-CCEEEEECBTTBCSCC---------------CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ccc--ccCCCCeEEEEecCC-CceeeeecCCCCCceE---------------EEEEEecCccEEEEec-CCcEEEEecCC
Confidence            887  544 59999999986 78888887743  322               4569999999999997 99999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-31  Score=252.93  Aligned_cols=240  Identities=15%  Similarity=0.089  Sum_probs=181.7

Q ss_pred             CcEEEEEEEecCCCCEE-EEeeCCCeEEEEEec--ccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l-~s~s~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      +.|.+++|  ++++++| ++++.|+.|++|++.  +++....+..                                   
T Consensus       103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-----------------------------------  145 (450)
T 2vdu_B          103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-----------------------------------  145 (450)
T ss_dssp             CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-----------------------------------
T ss_pred             CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-----------------------------------
Confidence            67999999  7899986 889999999999998  6654433220                                   


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceee-eeecCCCcccCCCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN-IVDMKPSNMDDLTE  268 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~  268 (457)
                                              ..|...|.+++|+|++++|+++ .++.|++|++.. ..... ..    ..+.+|..
T Consensus       146 ------------------------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~-~~~~~~~~----~~~~~h~~  196 (450)
T 2vdu_B          146 ------------------------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS-IPEEKFTQ----EPILGHVS  196 (450)
T ss_dssp             ------------------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CCCSSCCC----CCSEECSS
T ss_pred             ------------------------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC-cccccccc----eeeecccC
Confidence                                    2566789999999999999999 999999999983 33221 00    13577999


Q ss_pred             ceEEEEEecC---CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          269 VITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       269 ~i~~v~~~p~---~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      .|++++|+|+   + .+|++++.|+.|++||+++++..    ..            .+.+|...|.+++|+ ++++|+++
T Consensus       197 ~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~----~~------------~~~~h~~~v~~~~~s-d~~~l~s~  258 (450)
T 2vdu_B          197 MLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV----DK------------WLFGHKHFVSSICCG-KDYLLLSA  258 (450)
T ss_dssp             CEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE----EE------------ECCCCSSCEEEEEEC-STTEEEEE
T ss_pred             ceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee----ee------------eecCCCCceEEEEEC-CCCEEEEE
Confidence            9999999999   8 99999999999999999876432    11            123577899999999 99999998


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccccccccc----------cCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEec
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL----------YNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSH  413 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~  413 (457)
                      +. +.|++||+++ ++.+..+..+..........          .....-..+..++|+|++++|++++ .|+.|++|++
T Consensus       259 ~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          259 GGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             ESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             eCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            75 9999999986 77777776443110000000          0001112347899999999999999 8999999999


Q ss_pred             --CCCC--ceeeEEecCCCcceeeeeccCC
Q 012721          414 --GVGS--AGGITVEAGKNENRKPILQAAP  439 (457)
Q Consensus       414 --~~~~--~~~~~~~~~~~~v~~~~~~p~~  439 (457)
                        .++.  .....+.+| .++.+++|+|++
T Consensus       338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~  366 (450)
T 2vdu_B          338 SEKQKGDLALKQIITFP-YNVISLSAHNDE  366 (450)
T ss_dssp             CSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred             ccCCCCceeeccEeccC-CceEEEEecCCc
Confidence              4431  345667777 899999999964

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.6e-32  Score=255.93  Aligned_cols=266  Identities=17%  Similarity=0.259  Sum_probs=203.4

Q ss_pred             ccccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      .+.|.+.|++++|+|+ +.+||+|+.+|.|+||++......+                 ........+..+.+|.     
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~-----------------~~~~~~~~~~~~~~h~-----  181 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP-----------------EPSGECQPDLRLRGHQ-----  181 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC-----------------CTTCCCCCSEEEECCS-----
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc-----------------CccccCCCcEEecCCC-----
Confidence            4569999999999997 6899999999999999997632110                 0000123556778888     


Q ss_pred             cccccccCcEEEEEEEecCCCC-EEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          107 LKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                             ..|.+++|  ++++. +|++++.||.|++|++..+.....                                 
T Consensus       182 -------~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---------------------------------  219 (430)
T 2xyi_A          182 -------KEGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKEHR---------------------------------  219 (430)
T ss_dssp             -------SCCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBGGG---------------------------------
T ss_pred             -------CCeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCCCc---------------------------------
Confidence                   88999999  67777 999999999999999987421100                                 


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCc--ceeeeeecCCC
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPS  261 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~  261 (457)
                                          .......+ .+|...|.+++|+| ++.+|+++ .|+.|++||++...  .....      
T Consensus       220 --------------------~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~------  272 (430)
T 2xyi_A          220 --------------------VIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT------  272 (430)
T ss_dssp             --------------------EEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE------
T ss_pred             --------------------eeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE------
Confidence                                00111112 57899999999999 67888888 99999999998432  23322      


Q ss_pred             cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-
Q 012721          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-  340 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-  340 (457)
                       +..|...|++++|+|++..+|++|+.||.|++||+++....                ...+..|...|.+++|+|+++ 
T Consensus       273 -~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~----------------~~~~~~h~~~v~~i~~sp~~~~  335 (430)
T 2xyi_A          273 -VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK----------------LHSFESHKDEIFQVQWSPHNET  335 (430)
T ss_dssp             -EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------------SEEEECCSSCEEEEEECSSCTT
T ss_pred             -eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC----------------eEEeecCCCCEEEEEECCCCCC
Confidence             46788999999999998458999999999999999874211                112345778999999999996 


Q ss_pred             eEEEEe-cCcEEEEeccCCC-------------CceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCC
Q 012721          341 HLLSRD-YMNLKLWDIRMDS-------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYS  405 (457)
Q Consensus       341 ~l~s~~-~~~i~~wd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~d  405 (457)
                      +|++++ ++.|++||+...+             .++..+.+|...+               .+++|+|++. +|++++.|
T Consensus       336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~l~s~s~d  400 (430)
T 2xyi_A          336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------------SDFSWNPNEPWIICSVSED  400 (430)
T ss_dssp             EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------------EEEEECSSSTTEEEEEETT
T ss_pred             EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc---------------eEEEECCCCCCEEEEEECC
Confidence            467765 5999999997522             4455566666544               6999999999 99999999


Q ss_pred             CcEEEEecCCC
Q 012721          406 NLLRIFSHGVG  416 (457)
Q Consensus       406 g~i~iw~~~~~  416 (457)
                      |.|+||++...
T Consensus       401 g~i~iw~~~~~  411 (430)
T 2xyi_A          401 NIMQVWQMAEN  411 (430)
T ss_dssp             SEEEEEEECHH
T ss_pred             CCEEEeEcccc
Confidence            99999999754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1e-32  Score=262.39  Aligned_cols=261  Identities=11%  Similarity=0.049  Sum_probs=181.5

Q ss_pred             cccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..|.+.|++|+|+| ++++|++|+.||+|+|||+++....                           .....|..     
T Consensus       161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~---------------------------~~~~~~~~-----  208 (435)
T 4e54_B          161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR---------------------------VFASSDTI-----  208 (435)
T ss_dssp             CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE---------------------------EEECCSSC-----
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee---------------------------EEeccCCC-----
Confidence            46999999999998 6899999999999999998765421                           11122221     


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                           ...+.+++|  ++++.+|++|+.||.|++||++......                                    
T Consensus       209 -----~~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~~~~~~------------------------------------  245 (435)
T 4e54_B          209 -----NIWFCSLDV--SASSRMVVTGDNVGNVILLNMDGKELWN------------------------------------  245 (435)
T ss_dssp             -----SCCCCCEEE--ETTTTEEEEECSSSBEEEEESSSCBCCC------------------------------------
T ss_pred             -----CccEEEEEE--CCCCCEEEEEeCCCcEeeeccCcceeEE------------------------------------
Confidence                 156788999  6899999999999999999986532211                                    


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                +.+|...|.+++|+|++. +|++| .|+.|++||++........     ....+
T Consensus       246 --------------------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-----~~~~~  294 (435)
T 4e54_B          246 --------------------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-----LYSLP  294 (435)
T ss_dssp             --------------------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-----SBCCB
T ss_pred             --------------------------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-----EEeee
Confidence                                      167999999999999876 67778 9999999999843322211     12467


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccC----cccceeccccceEEEEEccCCCe
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG----SKSFFTEIIASISDIKFANDGQH  341 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~s~~g~~  341 (457)
                      |...|++++|+|++ .+|++++.||.|++||+++++...    .+..|.....    ...........+..+.+++++.+
T Consensus       295 h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  369 (435)
T 4e54_B          295 HRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPL----GLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNF  369 (435)
T ss_dssp             CSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEE----EECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred             ccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccce----EEecccccccccceeEEEEEcCCCCEEEEEEcCCCCe
Confidence            99999999999999 999999999999999999875431    1111110000    00000011122333444444444


Q ss_pred             EEEE-ec-CcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceE-EEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721          342 LLSR-DY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       342 l~s~-~~-~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                      ++++ .+ +.|++||..+ ++.+..+. +|...+               .++ +|+|+|.+|++|+ |+.|+||++++++
T Consensus       370 ~~~~~~~~~~i~iwd~~~-g~~~~~l~~~~~~~v---------------~s~~~fspdg~~lasg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          370 KSCTPYELRTIDVFDGNS-GKMMCQLYDPESSGI---------------SSLNEFNPMGDTLASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             CCSSTTCCCCEEEECSSS-CCEEEEECCSSCCCC---------------CCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred             EEEEecCCCEEEEEECCC-CcEEEEEeCCCCCcE---------------EEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence            4432 23 6799999986 67776654 444443               455 7999999999876 7899999999883

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-31  Score=254.51  Aligned_cols=276  Identities=15%  Similarity=0.192  Sum_probs=200.7

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEec---CCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETV---GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ..|.+.|++++|+|++++|++|+.||+|++||++   .++.                           ...+.+|.    
T Consensus       108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---------------------------~~~~~~~~----  156 (437)
T 3gre_A          108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE---------------------------VKFLNCEC----  156 (437)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE---------------------------EEEEEEEE----
T ss_pred             ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce---------------------------eeccccce----
Confidence            3689999999999999999999999999999995   3321                           12222221    


Q ss_pred             cccccc-----ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCC
Q 012721          106 YLKSLE-----IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (457)
Q Consensus       106 ~~~~~~-----~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (457)
                       +..+.     +...+.++.+..++++.+|++++.|+.|++||+.+++....+..                         
T Consensus       157 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------------------  210 (437)
T 3gre_A          157 -IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN-------------------------  210 (437)
T ss_dssp             -EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC-------------------------
T ss_pred             -eEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc-------------------------
Confidence             11110     33779999977688999999999999999999998766544320                         


Q ss_pred             CceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecC
Q 012721          181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (457)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  259 (457)
                                                        ..|...|++++|+|++++|++| .|+.|++||++ .++.+..+.  
T Consensus       211 ----------------------------------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~--  253 (437)
T 3gre_A          211 ----------------------------------SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR-FNVLIRSWS--  253 (437)
T ss_dssp             ----------------------------------CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT-TTEEEEEEB--
T ss_pred             ----------------------------------CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC-CccEEEEEe--
Confidence                                              1277899999999999999999 99999999999 566655431  


Q ss_pred             CCcccCCCCceEEEEEec----CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccC-----------ccccee
Q 012721          260 PSNMDDLTEVITSAEFHP----IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG-----------SKSFFT  324 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p----~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~  324 (457)
                          ..|...|.+++|+|    ++ .+|++++.||.|++||+++++..    ..+..|.....           ....+.
T Consensus       254 ----~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (437)
T 3gre_A          254 ----FGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQ----YAFINSDEQPSMEHFLPIEKGLEELNFC  324 (437)
T ss_dssp             ----CTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEE----EEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred             ----cCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEE----EEEEcCCCCCccceecccccccccceec
Confidence                25777899996665    56 79999999999999999987654    22322111100           011233


Q ss_pred             c--cccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccc-------------------------
Q 012721          325 E--IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLC-------------------------  376 (457)
Q Consensus       325 ~--h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-------------------------  376 (457)
                      +  |...|++++|+ ++++|++++ |+.|++||+.. ++....+.+|........                         
T Consensus       325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (437)
T 3gre_A          325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDD  402 (437)
T ss_dssp             CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---------
T ss_pred             ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-cccceEEecccccCceEEEEEeecceEEEEEecccccccccCc
Confidence            4  88899999999 788999887 59999999985 677777766421110000                         


Q ss_pred             cccCCCCccccceEEEcCC--CcEEEEEeCCCcEEEEe
Q 012721          377 DLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFS  412 (457)
Q Consensus       377 ~~~~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~iw~  412 (457)
                      .....+   .|++++|+++  +.+|++|+.||.|+||+
T Consensus       403 ~~~h~~---~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          403 SLYHHD---IINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ----CC---CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccccc---ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            000111   2378999988  88999999999999995

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.5e-30  Score=236.83  Aligned_cols=246  Identities=19%  Similarity=0.291  Sum_probs=198.8

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|...|++++|+|++++||+|+.||+|+||++.+++                           .+..+.+|.        
T Consensus        65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~---------------------------~~~~~~~h~--------  109 (318)
T 4ggc_A           65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS--------  109 (318)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS--------
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce---------------------------eEEEecCcc--------
Confidence            478899999999999999999999999999998776                           456788888        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..+.++.+    ++..+++++.++.+++|+...+.....                                     
T Consensus       110 ----~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~-------------------------------------  144 (318)
T 4ggc_A          110 ----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVA-------------------------------------  144 (318)
T ss_dssp             ----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE-------------------------------------
T ss_pred             ----ceEEEeec----CCCEEEEEecCCceEeeecCCCceeEE-------------------------------------
Confidence                66777665    456999999999999999876533211                                     


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                            . +.+|...+.++.+++++++|+++ .|+.|++||++.........    .....+..
T Consensus       145 ----------------------~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~  197 (318)
T 4ggc_A          145 ----------------------T-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----QTFTQHQG  197 (318)
T ss_dssp             ----------------------E-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----EEECCCCS
T ss_pred             ----------------------E-EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----eeecccCC
Confidence                                  1 15788899999999999999999 99999999998433221110    12456778


Q ss_pred             ceEEEEEecCCccEE--EEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          269 VITSAEFHPIYCNLL--AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l--~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      .|.+++++|+++..+  ++++.++.|++||.+.....    ..              ..+...+..+.|+|++..+++++
T Consensus       198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~--------------~~~~~~v~~~~~~~~~~~~~~~s  259 (318)
T 4ggc_A          198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SA--------------VDAHSQVCSILWSPHYKELISGH  259 (318)
T ss_dssp             CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EE--------------EECSSCEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----cc--------------ccceeeeeeeeecccccceEEEE
Confidence            899999999885554  45678999999999886432    11              22346799999999999888653


Q ss_pred             ---cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          347 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       347 ---~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                         |+.|++||+++ ++++..+.+|...+               ++++|+||+++|+||+.||+|+|||+...
T Consensus       260 g~~d~~i~iwd~~~-~~~~~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          260 GFAQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CTTTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EcCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence               49999999986 88999999998876               79999999999999999999999999765

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.1e-30  Score=238.15  Aligned_cols=278  Identities=14%  Similarity=0.189  Sum_probs=208.5

Q ss_pred             ceeeeeccCCccccccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEeccccee---EEEeec-CCCceeeeee
Q 012721           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVK---KIKEMD-HFPFVSSENT  166 (457)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~---~~~~~~-~~~~~~~~~~  166 (457)
                      .+..+|+||.            +.|++|+|  +|+ +++|+||+.|++|++||+..++..   ....+. ....|.++.|
T Consensus        29 ~l~~tL~GH~------------~~V~~v~~--sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~   94 (340)
T 4aow_A           29 TLRGTLKGHN------------GWVTQIAT--TPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI   94 (340)
T ss_dssp             EEEEEECCCS------------SCEEEEEE--CTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEECCcc------------CCEEEEEE--eCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE
Confidence            3566899999            89999999  565 679999999999999999875432   122222 2345777777


Q ss_pred             ccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEE
Q 012721          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (457)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd  245 (457)
                      .+....++...              .++.+++|+.......   ... ..+...+..+.+++++.+|+++ .|+.+++||
T Consensus        95 s~dg~~l~s~~--------------~d~~i~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d  156 (340)
T 4aow_A           95 SSDGQFALSGS--------------WDGTLRLWDLTTGTTT---RRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN  156 (340)
T ss_dssp             CTTSSEEEEEE--------------TTSEEEEEETTTTEEE---EEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEc--------------ccccceEEeeccccee---eee-cCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence            65433222222              2557889988754322   222 4677788899999999999999 999999999


Q ss_pred             cCCCcceeeeeecCCCcccCCCCceEEEEEecCCc-cEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (457)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (457)
                      +.. ......      ...+|...+..++|++++. .++++++.|+.|++||+++++..    ..             +.
T Consensus       157 ~~~-~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~----~~-------------~~  212 (340)
T 4aow_A          157 TLG-VCKYTV------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK----TN-------------HI  212 (340)
T ss_dssp             TTS-CEEEEE------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE----EE-------------EC
T ss_pred             eCC-CceEEE------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee----eE-------------ec
Confidence            883 332222      2577899999999988752 47889999999999999987543    22             34


Q ss_pred             ccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721          325 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       325 ~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                      +|...|++++|+|++++|++++. +.|++||++. .+.+..+..+...                ..++|+|++.++ +++
T Consensus       213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~v----------------~~~~~~~~~~~~-~~~  274 (340)
T 4aow_A          213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDII----------------NALCFSPNRYWL-CAA  274 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECSSCE----------------EEEEECSSSSEE-EEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecCCceE----------------EeeecCCCCcee-ecc
Confidence            57789999999999999999875 9999999986 7777777665432                589999988655 566


Q ss_pred             CCCcEEEEecCCCCceeeE---------EecCCCcceeeeeccCCcceec
Q 012721          404 YSNLLRIFSHGVGSAGGIT---------VEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       404 ~dg~i~iw~~~~~~~~~~~---------~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      .|+.|++||++++ .....         ..+|...|.+++|+|++...++
T Consensus       275 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  323 (340)
T 4aow_A          275 TGPSIKIWDLEGK-IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA  323 (340)
T ss_dssp             ETTEEEEEETTTT-EEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred             CCCEEEEEECCCC-eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence            7899999999876 33332         3578999999999999987776

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-32  Score=254.20  Aligned_cols=257  Identities=7%  Similarity=-0.004  Sum_probs=193.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...|.+++|+|||+++|+++.|++|+  |...++                              .+.+|.          
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------------~l~gh~----------   52 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------------------------------DINCNS----------   52 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------------------------------CCSSBG----------
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccc------------------------------eecCCC----------
Confidence            57999999999999999999999999  644332                              346788          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        ..|.+++|  +|+|       .++.+.+|+.+.....                                         
T Consensus        53 --~~v~~V~F--sPdg-------~~~~~~~~~~~~~~~~-----------------------------------------   80 (588)
T 2j04_A           53 --KNLFHVKE--FPLE-------FENKLDFELAQQNGLL-----------------------------------------   80 (588)
T ss_dssp             --GGTEEEEE--ECCC-------CCCTTTTSCCCSSCSS-----------------------------------------
T ss_pred             --ccEEEEEE--CCCC-------CcceEEEEeCCCceEe-----------------------------------------
Confidence              78999999  5777       4555555554322111                                         


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC--
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE--  268 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--  268 (457)
                                            ...|...|.+++|+|+|+.||++ .||.|++||.+ .  .+..       +. |..  
T Consensus        81 ----------------------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~-~--~l~~-------l~-~~~~~  127 (588)
T 2j04_A           81 ----------------------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN-K--MLTN-------LD-SKGNL  127 (588)
T ss_dssp             ----------------------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-E--EEEE-------CC-CSSCS
T ss_pred             ----------------------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-c--eeee-------cc-CCCcc
Confidence                                  02457789999999999999999 99999999965 2  4333       34 443  


Q ss_pred             ---ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc---ccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721          269 ---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (457)
Q Consensus       269 ---~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l  342 (457)
                         .+.+++|+|+| ++|++|+.||+|++||+.+++....   ....+..         ...+|...|.+++|+|+| ++
T Consensus       128 ~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~---------~~~gh~~~V~sVawSPdg-La  196 (588)
T 2j04_A          128 SSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL---------SDAGSKDWVTHIVWYEDV-LV  196 (588)
T ss_dssp             TTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC---------SCTTCCCCEEEEEEETTE-EE
T ss_pred             ccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeec---------ccccccccEEEEEEcCCc-EE
Confidence               59999999999 9999999999999999988642100   0122211         124577899999999999 55


Q ss_pred             EEEecCcEEEEeccCCCCc---eeEee-eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721          343 LSRDYMNLKLWDIRMDSTP---VATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  418 (457)
Q Consensus       343 ~s~~~~~i~~wd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~  418 (457)
                      +++.|+.|++||+.. +..   ..++. +|...+               .+++|+  ++.||+++ +++|++||+.++ +
T Consensus       197 ass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~V---------------~svaFs--g~~LASa~-~~tIkLWd~~~~-~  256 (588)
T 2j04_A          197 AALSNNSVFSMTVSA-SSHQPVSRMIQNASRRKI---------------TDLKIV--DYKVVLTC-PGYVHKIDLKNY-S  256 (588)
T ss_dssp             EEETTCCEEEECCCS-SSSCCCEEEEECCCSSCC---------------CCEEEE--TTEEEEEC-SSEEEEEETTTT-E
T ss_pred             EEeCCCeEEEEECCC-CccccceeeecccccCcE---------------EEEEEE--CCEEEEEe-CCeEEEEECCCC-e
Confidence            556679999999975 342   24553 565544               689999  68999987 699999999988 3


Q ss_pred             eeeEEecCCCcceeeee--ccCCcceeccc
Q 012721          419 GGITVEAGKNENRKPIL--QAAPRARRSSL  446 (457)
Q Consensus       419 ~~~~~~~~~~~v~~~~~--~p~~~~~~~~~  446 (457)
                      ......+|.+.+..++|  +|++...+++.
T Consensus       257 ~~~~~~gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          257 ISSLKTGSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             EEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred             EEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence            33334489999999999  99997777755

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-31  Score=246.28  Aligned_cols=260  Identities=16%  Similarity=0.137  Sum_probs=188.3

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEE
Q 012721           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (457)
Q Consensus        38 ~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~  117 (457)
                      ..+.+++.+||+|+.||+|++||+.+++..                           ..+.  .            ..|.
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~---------------------------~~~~--~------------~~v~   80 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI---------------------------TTIT--T------------PNPR   80 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCE---------------------------EEEE--E------------ECCC
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEE---------------------------EEEe--c------------CCce
Confidence            344567899999999999999999887642                           2222  2            4577


Q ss_pred             EEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceE
Q 012721          118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  197 (457)
Q Consensus       118 ~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  197 (457)
                      ++.|+  |+   +++++.|++|++|+....                                                +.
T Consensus        81 ~~~~~--~~---~~s~s~D~~i~~w~~~~~------------------------------------------------~~  107 (343)
T 3lrv_A           81 TGGEH--PA---IISRGPCNRLLLLYPGNQ------------------------------------------------IT  107 (343)
T ss_dssp             TTCCC--CS---EEEECSTTEEEEEETTTE------------------------------------------------EE
T ss_pred             eeeeC--Cc---eEEecCCCeEEEEEccCc------------------------------------------------eE
Confidence            77784  44   999999999999998653                                                22


Q ss_pred             EEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEE
Q 012721          198 IANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  274 (457)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  274 (457)
                      +|+....   +.++....+|...|.+++|+|  ++++++++ .|+.|++||++ .++.....      ...+...+.+++
T Consensus       108 ~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~------~~~~~~~i~~~~  177 (343)
T 3lrv_A          108 ILDSKTN---KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDSQYIVH------SAKSDVEYSSGV  177 (343)
T ss_dssp             EEETTTC---CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS-SSCEEEEE------CCCSSCCCCEEE
T ss_pred             EeecCCc---ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEE------ecCCCCceEEEE
Confidence            3333221   222333257788999999999  99999999 99999999999 55554432      234566799999


Q ss_pred             EecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec-cccceEEEEEccCCCeEEEEecCcEEEE
Q 012721          275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRDYMNLKLW  353 (457)
Q Consensus       275 ~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~~~i~~w  353 (457)
                      |+|++ .+|++|+.||.|++||+++++...      .          .+.. |...|++++|+|+|.+|++++++.|++|
T Consensus       178 ~~pdg-~~lasg~~dg~i~iwd~~~~~~~~------~----------~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iw  240 (343)
T 3lrv_A          178 LHKDS-LLLALYSPDGILDVYNLSSPDQAS------S----------RFPVDEEAKIKEVKFADNGYWMVVECDQTVVCF  240 (343)
T ss_dssp             ECTTS-CEEEEECTTSCEEEEESSCTTSCC------E----------ECCCCTTSCEEEEEECTTSSEEEEEESSBEEEE
T ss_pred             ECCCC-CEEEEEcCCCEEEEEECCCCCCCc------c----------EEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEE
Confidence            99999 999999999999999999874220      0          1233 7789999999999999999988899999


Q ss_pred             eccCCCCceeEeee---ccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCCceeeEEecCCCc
Q 012721          354 DIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKNE  429 (457)
Q Consensus       354 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~  429 (457)
                      |++. .+.+..+..   |...+..             .+++|+|++++|++++. |+.|++|++..+.+....     .+
T Consensus       241 d~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~  301 (343)
T 3lrv_A          241 DLRK-DVGTLAYPTYTIPEFKTGT-------------VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DE  301 (343)
T ss_dssp             ETTS-STTCBSSCCCBC-----CC-------------EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EE
T ss_pred             EcCC-CCcceeecccccccccccc-------------eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cC
Confidence            9986 555444433   2222100             25999999999999998 999999999766332221     44


Q ss_pred             ceeeeecc
Q 012721          430 NRKPILQA  437 (457)
Q Consensus       430 v~~~~~~p  437 (457)
                      +..+.|+|
T Consensus       302 ~~~~~~~~  309 (343)
T 3lrv_A          302 ESALCLQS  309 (343)
T ss_dssp             EEECCC--
T ss_pred             ceeEecCc
Confidence            55555555

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.8e-30  Score=249.23  Aligned_cols=291  Identities=14%  Similarity=0.156  Sum_probs=211.1

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|++++|+|++ +|++|+.||+|++||+.+++                           .+..+.+|.        
T Consensus       160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~---------------------------~~~~~~~h~--------  203 (464)
T 3v7d_B          160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC---------------------------CTHVFEGHN--------  203 (464)
T ss_dssp             CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred             CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc---------------------------EEEEECCCC--------
Confidence            499999999999988 99999999999999998765                           456788888        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc----ccccCCCCCceec
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN----FMNEHNPPSFAHG  185 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  185 (457)
                          +.|.+++|.+.+++.++++++.|+.|++||+.++............  ..+.+.+....    .+..+......+.
T Consensus       204 ----~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~  277 (464)
T 3v7d_B          204 ----STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY--PLVFHTPEENPYFVGVLRGHMASVRTVS  277 (464)
T ss_dssp             ----SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS--SEEESCGGGCTTEEEEECCCSSCEEEEE
T ss_pred             ----CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc--ceEeeccCCCeEEEEEccCccceEEEEc
Confidence                8899999987788899999999999999999877544322111110  00001110000    0011111111222


Q ss_pred             cCCcc----ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721          186 YHLEW----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       186 ~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                      +++.+    ..++.+++||+..   .+++..+ .+|...|.+++|+|+++++++| .|+.|++||++ .++....     
T Consensus       278 ~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~-----  347 (464)
T 3v7d_B          278 GHGNIVVSGSYDNTLIVWDVAQ---MKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE-NGELMYT-----  347 (464)
T ss_dssp             EETTEEEEEETTSCEEEEETTT---TEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEE-----
T ss_pred             CCCCEEEEEeCCCeEEEEECCC---CcEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEE-----
Confidence            23321    2356899999964   3455555 7899999999999999999999 99999999998 5665554     


Q ss_pred             CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                        +.+|...|.+++|+  + .+|++++.||.|++||+++....      +..            .|...+..++|+|+++
T Consensus       348 --~~~h~~~v~~~~~~--~-~~l~s~s~dg~v~vwd~~~~~~~------~~~------------~~~~~~~~~~~~~~~~  404 (464)
T 3v7d_B          348 --LQGHTALVGLLRLS--D-KFLVSAAADGSIRGWDANDYSRK------FSY------------HHTNLSAITTFYVSDN  404 (464)
T ss_dssp             --ECCCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCEE------EEE------------ECTTCCCEEEEEECSS
T ss_pred             --EeCCCCcEEEEEEc--C-CEEEEEeCCCcEEEEECCCCcee------eee------------cCCCCccEEEEEeCCC
Confidence              57899999999997  3 78999999999999999886422      111            1245678889999999


Q ss_pred             eEEEEecCcEEEEeccCCCCceeE-eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          341 HLLSRDYMNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       341 ~l~s~~~~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      +|++++++.|++||+++ ++.+.. +..|...+               .+++|+ +..++++++.||.+.+|-
T Consensus       405 ~l~~~~dg~i~iwd~~~-g~~~~~~~~~~~~~v---------------~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          405 ILVSGSENQFNIYNLRS-GKLVHANILKDADQI---------------WSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEEEEETTEEEEEETTT-CCEEESCTTTTCSEE---------------EEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             EEEEecCCeEEEEECCC-CcEEehhhccCCCcE---------------EEEEec-CCEEEEEEEeCCeEEEEE
Confidence            99999999999999986 677664 44454443               688997 445666667777666554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.9e-31  Score=245.76  Aligned_cols=282  Identities=11%  Similarity=0.088  Sum_probs=211.6

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccc------eeEEEeecCCCceeeeee
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK------VKKIKEMDHFPFVSSENT  166 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~  166 (457)
                      ....+.+|.            +.|++++|  ++  .+|++++.|+.|++|++.+++      ...... .....|.++.|
T Consensus         8 ~~~~~~~h~------------~~i~~~~~--~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~   70 (397)
T 1sq9_A            8 TANAGKAHD------------ADIFSVSA--CN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDV   70 (397)
T ss_dssp             EEEESSCSS------------SCEEEEEE--CS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEE
T ss_pred             hhhhhhhhh------------cCeEEEEe--cC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEE
Confidence            445678888            89999999  45  699999999999999999887      333333 34456888888


Q ss_pred             ccc----c---ccccccCCCCCceeccCCccccccceEEEeccCcccc-cc-ceeeccCC-----CCCeeEEEeC----C
Q 012721          167 LLA----E---KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA-RC-QKVYPHAH-----DFNINSISNN----S  228 (457)
Q Consensus       167 ~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~-~~~~~~~h-----~~~v~~~~~~----~  228 (457)
                      .+.    .   ..++...              .++.+++|+++..... .. +..+ ..|     ...|.+++|+    |
T Consensus        71 ~~~~~~~g~~~~~l~s~~--------------~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  135 (397)
T 1sq9_A           71 LQAIERDAFELCLVATTS--------------FSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDR  135 (397)
T ss_dssp             EEEEETTTEEEEEEEEEE--------------TTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC--
T ss_pred             ecccccCCccccEEEEEc--------------CCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCC
Confidence            866    2   2222221              2568999999754321 11 3333 667     5899999999    9


Q ss_pred             CCCE-EEEe-CCCeEEEEEcCCC-----cceee-----eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          229 DCET-FVSA-DDLRINLWNLEIS-----DQCFN-----IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       229 ~~~~-l~~~-~d~~i~iwd~~~~-----~~~~~-----~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      ++++ |+++ .|+.|++||++..     ...+.     .+.........|...|.+++|+|++  +|++++.||.|++||
T Consensus       136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISE  213 (397)
T ss_dssp             --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEE
T ss_pred             CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEE
Confidence            9999 9999 9999999999840     33332     2100000014578899999999997  899999999999999


Q ss_pred             ccCCeeeccccccccccccccCcccceecc---ccceEEEEEccCCCeEEEEe-c---CcEEEEeccCCCCceeEeee--
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEI---IASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKI--  367 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~g~~l~s~~-~---~~i~~wd~~~~~~~~~~~~~--  367 (457)
                      +++++..    ..+..          ..+|   ...|.+++|+|++++|++++ +   +.|++||++. ++.+..+..  
T Consensus       214 ~~~~~~~----~~~~~----------~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~  278 (397)
T 1sq9_A          214 LSTLRPL----YNFES----------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPT  278 (397)
T ss_dssp             TTTTEEE----EEEEC----------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC-
T ss_pred             CCCCcee----EEEec----------cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCc
Confidence            9986533    22211          0126   68899999999999999875 6   8999999986 788888877  


Q ss_pred             -----------ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe------cC----
Q 012721          368 -----------HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE------AG----  426 (457)
Q Consensus       368 -----------~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~------~~----  426 (457)
                                 |...+               .+++|+|++++|++++.||.|++||+.++ +....+.      +|    
T Consensus       279 ~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~  342 (397)
T 1sq9_A          279 HSSQASLGEFAHSSWV---------------MSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDI  342 (397)
T ss_dssp             -------CCBSBSSCE---------------EEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGC
T ss_pred             ccccccccccccCCcE---------------EEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhh
Confidence                       66544               68999999999999999999999999998 6778888      88    


Q ss_pred             -----------CCcceeeeeccCC
Q 012721          427 -----------KNENRKPILQAAP  439 (457)
Q Consensus       427 -----------~~~v~~~~~~p~~  439 (457)
                                 ..+|.+++|+|++
T Consensus       343 ~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          343 LAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             CCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             hccccccccccCCceeEEEecccc
Confidence                       9999999999998

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=8.4e-31  Score=246.72  Aligned_cols=256  Identities=14%  Similarity=0.148  Sum_probs=200.7

Q ss_pred             ccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ...|.+.|++++|+| ++++||+|+.||+|+||++.++...                    ....+.+..+.+|.     
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~--------------------~~~~~~~~~~~~h~-----  131 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV--------------------LPLREPVITLEGHT-----  131 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS--------------------SCBCSCSEEEECCS-----
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc--------------------cccCCceEEecCCC-----
Confidence            446999999999999 9999999999999999999876431                    00112456788888     


Q ss_pred             cccccccCcEEEEEEEecCCC-CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          107 LKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                             ..|.+++|  ++++ .+|++++.|+.|++||+.+++....+.                               
T Consensus       132 -------~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------------  171 (402)
T 2aq5_A          132 -------KRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-------------------------------  171 (402)
T ss_dssp             -------SCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-------------------------------
T ss_pred             -------CeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-------------------------------
Confidence                   88999999  6776 699999999999999999876543321                               


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                                  ..+|...|.+++|+|++++|+++ .|+.|++||++ .++....+      ..
T Consensus       172 ----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~------~~  216 (402)
T 2aq5_A          172 ----------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR-KGTVVAEK------DR  216 (402)
T ss_dssp             ----------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEE------EC
T ss_pred             ----------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC-CCceeeee------cc
Confidence                                        04688899999999999999999 99999999998 55555442      14


Q ss_pred             CCCCc-eEEEEEecCCccEEEEE---ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          265 DLTEV-ITSAEFHPIYCNLLAYS---SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       265 ~~~~~-i~~v~~~p~~~~~l~~~---~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                      .|... +.++.|+|++ .+|++|   +.|+.|++||+++.+...   ....            ..|...+.+++|+|+++
T Consensus       217 ~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~---~~~~------------~~~~~~v~~~~~s~~~~  280 (402)
T 2aq5_A          217 PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPL---SLQE------------LDTSSGVLLPFFDPDTN  280 (402)
T ss_dssp             SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCS---EEEE------------CCCCSSCEEEEEETTTT
T ss_pred             CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCc---eEEe------------ccCCCceeEEEEcCCCC
Confidence            56655 8999999998 999999   799999999998864210   1111            12456799999999999


Q ss_pred             eEE-EEe-cCcEEEEeccCCCCc-eeEeeecc--ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721          341 HLL-SRD-YMNLKLWDIRMDSTP-VATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       341 ~l~-s~~-~~~i~~wd~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      +|+ +++ |+.|++||+.. +++ +..+..+.  ..+               .+++|+|++.++++  .++.+++|++.+
T Consensus       281 ~l~~~g~~dg~i~i~d~~~-~~~~~~~l~~~~~~~~v---------------~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          281 IVYLCGKGDSSIRYFEITS-EAPFLHYLSMFSSKESQ---------------RGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             EEEEEETTCSCEEEEEECS-STTCEEEEEEECCSSCC---------------SEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             EEEEEEcCCCeEEEEEecC-CCcceEeecccccCCcc---------------cceEEeccccccee--cceeEEEEEcCC
Confidence            997 454 59999999986 443 55665554  332               69999999998865  566999999998


Q ss_pred             CC
Q 012721          416 GS  417 (457)
Q Consensus       416 ~~  417 (457)
                      +.
T Consensus       343 ~~  344 (402)
T 2aq5_A          343 RK  344 (402)
T ss_dssp             TE
T ss_pred             Cc
Confidence            73

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-30  Score=236.78  Aligned_cols=282  Identities=12%  Similarity=0.145  Sum_probs=220.1

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (457)
                      ....+.+|.            +.|++++|  ++++++|++++.|+.|++||+.+++....+.. ....+.+++|.+....
T Consensus        24 ~~~~l~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~   88 (369)
T 3zwl_B           24 KAIKLTGHE------------RPLTQVKY--NKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKY   88 (369)
T ss_dssp             EEEEEECCS------------SCEEEEEE--CTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSE
T ss_pred             ccEEEEEee------------ceEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCE
Confidence            445678888            89999999  78999999999999999999998877665543 3345778888764333


Q ss_pred             ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC-----CeEEEEEc
Q 012721          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNL  246 (457)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-----~~i~iwd~  246 (457)
                      ++...              .++.+++||+...   +++..+  .+...|.+++|+|++++++++ .+     +.|++||+
T Consensus        89 l~s~~--------------~dg~i~iwd~~~~---~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~  149 (369)
T 3zwl_B           89 CVTGS--------------ADYSIKLWDVSNG---QCVATW--KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI  149 (369)
T ss_dssp             EEEEE--------------TTTEEEEEETTTC---CEEEEE--ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred             EEEEe--------------CCCeEEEEECCCC---cEEEEe--ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence            33222              2568999999753   344444  278899999999999999998 88     99999999


Q ss_pred             CCCcceeeeeec---CCCcccCCCC--ceEEEEEecCCccEEEEEccCCeEEEEEccCC-eeeccccccccccccccCcc
Q 012721          247 EISDQCFNIVDM---KPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSK  320 (457)
Q Consensus       247 ~~~~~~~~~~~~---~~~~~~~~~~--~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~  320 (457)
                      ............   ....+..|..  .+.+++|+|++ ++|++++.||.|++||+++. +..    ..           
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~-----------  213 (369)
T 3zwl_B          150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV----DS-----------  213 (369)
T ss_dssp             EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE----EE-----------
T ss_pred             cCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE----EE-----------
Confidence            843321111100   0012344555  89999999999 99999999999999999873 221    12           


Q ss_pred             cceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEE
Q 012721          321 SFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  399 (457)
Q Consensus       321 ~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  399 (457)
                        +..|...|.+++|+|++++|++++. +.|++||++. ++.+..+.. ...+               ..++|+|+++++
T Consensus       214 --~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~-~~~~---------------~~~~~~~~~~~l  274 (369)
T 3zwl_B          214 --IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYET-DCPL---------------NTAVITPLKEFI  274 (369)
T ss_dssp             --EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-SSCE---------------EEEEECSSSSEE
T ss_pred             --EecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-CceeeeecC-CCCc---------------eeEEecCCCceE
Confidence              3446788999999999999999875 9999999986 777777763 3322               689999999999


Q ss_pred             EEEeCCC--------------cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          400 ATGSYSN--------------LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       400 ~s~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ++++.++              .+++||+.++ +....+.+|..+|.+++|+|++...++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s  332 (369)
T 3zwl_B          275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQGTSYAS  332 (369)
T ss_dssp             EEEECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEeecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCCCEEEE
Confidence            9999988              8999999999 778889999999999999999987776

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-30  Score=233.78  Aligned_cols=238  Identities=18%  Similarity=0.288  Sum_probs=194.0

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|...|.+++|+|++++|++|+.||.|++|++.....                        .+.+..+.+|.       
T Consensus        56 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------------------------~~~~~~~~~~~-------  104 (313)
T 3odt_A           56 YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG------------------------EDPLYTLIGHQ-------  104 (313)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT------------------------SCC-CEECCCS-------
T ss_pred             ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC------------------------CCcccchhhcc-------
Confidence            34889999999999999999999999999999876542                        22455677888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.++.|    ++.++++++.|+.|++||  .++....                                    
T Consensus       105 -----~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~------------------------------------  137 (313)
T 3odt_A          105 -----GNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYN------------------------------------  137 (313)
T ss_dssp             -----SCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEE------------------------------------
T ss_pred             -----cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEe------------------------------------
Confidence                 88999999    356999999999999999  3322221                                    


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC-
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-  265 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-  265 (457)
                                               +..|...+.+++|.| +++.++++ .|+.|++||..   .....       +.. 
T Consensus       138 -------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~-------~~~~  182 (313)
T 3odt_A          138 -------------------------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKT-------FSGI  182 (313)
T ss_dssp             -------------------------EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEE-------ECSS
T ss_pred             -------------------------cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEE-------Eecc
Confidence                                     156888999999988 89999999 99999999944   23332       233 


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      |...+.+++|+|++ . +++++.||.|++||+++++..    ..             +.+|...|++++|+|++. |+++
T Consensus       183 ~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~----~~-------------~~~~~~~i~~~~~~~~~~-l~~~  242 (313)
T 3odt_A          183 HNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVL----RT-------------YEGHESFVYCIKLLPNGD-IVSC  242 (313)
T ss_dssp             CSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCEE----EE-------------EECCSSCEEEEEECTTSC-EEEE
T ss_pred             CcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhhh----hh-------------hhcCCceEEEEEEecCCC-EEEE
Confidence            88999999999998 6 999999999999999987533    22             345678999999999995 5555


Q ss_pred             e-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       346 ~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      + ++.|++||++. ++++..+..|...+               .+++|+|+++ +++++.||.|++|++.++
T Consensus       243 ~~dg~v~iwd~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          243 GEDRTVRIWSKEN-GSLKQVITLPAISI---------------WSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             ETTSEEEEECTTT-CCEEEEEECSSSCE---------------EEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             ecCCEEEEEECCC-CceeEEEeccCceE---------------EEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            4 69999999986 78888888887654               6899999998 567999999999999987

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.2e-30  Score=258.94  Aligned_cols=285  Identities=14%  Similarity=0.165  Sum_probs=210.6

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccce-----eEEEeecCCCceeeeee
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKV-----KKIKEMDHFPFVSSENT  166 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~  166 (457)
                      ....+++|.            +.|++++|  +++ +++|++|+.|++|++|++..+..     ...+ ......|.+++|
T Consensus       374 ~~~~l~~H~------------~~V~~v~~--~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~  438 (694)
T 3dm0_A          374 LKGTMRAHT------------DMVTAIAT--PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVL  438 (694)
T ss_dssp             EEEEEECCS------------SCEEEEEC--CTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEE
T ss_pred             hhhhcccCC------------ceeEEEEe--cCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEE
Confidence            334567777            89999999  444 57999999999999999876421     1122 223445777777


Q ss_pred             ccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEE
Q 012721          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (457)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd  245 (457)
                      ++....++...              .++.+++||+...   ++.+.+ .+|...|.+++|+|++++|++| .|++|++||
T Consensus       439 s~~g~~l~sgs--------------~Dg~v~vwd~~~~---~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          439 SSDGQFALSGS--------------WDGELRLWDLAAG---VSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             CTTSSEEEEEE--------------TTSEEEEEETTTT---EEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEe--------------CCCcEEEEECCCC---cceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            65433333222              2568999999643   444555 7899999999999999999999 999999999


Q ss_pred             cCCCcceeeeeecCCCcccCCCCceEEEEEecCCc-cEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (457)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (457)
                      .. ......+.    ....+|...|.+++|+|++. ..|++++.|++|++||+++++..    ..             +.
T Consensus       501 ~~-~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~----~~-------------~~  558 (694)
T 3dm0_A          501 TL-GECKYTIS----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR----ST-------------LA  558 (694)
T ss_dssp             TT-SCEEEEEC----SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE----EE-------------EC
T ss_pred             CC-CCcceeec----cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE----EE-------------Ec
Confidence            87 33332221    12467899999999999862 48999999999999999886432    12             35


Q ss_pred             ccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721          325 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       325 ~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                      +|...|++++|+|++++|++++. +.|++||++. ++.+..+..+.. +               .+++|+|++.+|++++
T Consensus       559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~~~~-v---------------~~~~~sp~~~~l~~~~  621 (694)
T 3dm0_A          559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEANSV-I---------------HALCFSPNRYWLCAAT  621 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT-TEEEECCBCSSC-E---------------EEEEECSSSSEEEEEE
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEecCCCc-E---------------EEEEEcCCCcEEEEEc
Confidence            67889999999999999999875 9999999986 666666554332 2               6899999999888776


Q ss_pred             CCCcEEEEecCCCCceeeEEecCC-------------------CcceeeeeccCCcceecccccccccc
Q 012721          404 YSNLLRIFSHGVGSAGGITVEAGK-------------------NENRKPILQAAPRARRSSLSNLTRGL  453 (457)
Q Consensus       404 ~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~v~~~~~~p~~~~~~~~~~~~~~~~  453 (457)
                      . +.|++||+.++ .....+..+.                   ..+.+++|+|++....+  ++.+...
T Consensus       622 ~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s--gs~Dg~i  686 (694)
T 3dm0_A          622 E-HGIKIWDLESK-SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS--GYTDGVI  686 (694)
T ss_dssp             T-TEEEEEETTTT-EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE--EETTSEE
T ss_pred             C-CCEEEEECCCC-CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE--EcCCCeE
Confidence            4 56999999988 4444443321                   23678999999998888  4444333

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-29  Score=240.89  Aligned_cols=276  Identities=14%  Similarity=0.259  Sum_probs=216.3

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|.+++|+  +++|++|+.||+|++||+.+++                           .+..+.+|.        
T Consensus       157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~--------  199 (445)
T 2ovr_B          157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE---------------------------CIHTLYGHT--------  199 (445)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred             CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc---------------------------EEEEECCCC--------
Confidence            489999999998  6799999999999999998765                           456788888        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..|.++.|.    ++.+++++.|+.|++||+.+++.......+ ...+.++++   ++..+.+.            
T Consensus       200 ----~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~---~~~~l~~~------------  255 (445)
T 2ovr_B          200 ----STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQY---DGRRVVSG------------  255 (445)
T ss_dssp             ----SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEEEEE---CSSCEEEE------------
T ss_pred             ----CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCC-cccEEEEEE---CCCEEEEE------------
Confidence                889999992    458999999999999999998776655432 344666666   22222211            


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                       ..++.+++||.+.   .+++..+ .+|...|.+++|  ++.+++++ .|+.|++||++ .++....       +.+|..
T Consensus       256 -~~dg~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~-------~~~~~~  320 (445)
T 2ovr_B          256 -AYDFMVKVWDPET---ETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE-TGNCIHT-------LTGHQS  320 (445)
T ss_dssp             -ETTSCEEEEEGGG---TEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCCS
T ss_pred             -cCCCEEEEEECCC---CcEeEEe-cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC-CCCEEEE-------EcCCcc
Confidence             1256899999864   3455555 789999999999  78899999 99999999998 5555544       567888


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-  347 (457)
                      .+.++.++  + .++++|+.||.|++||+++++..    ..+..          ...|...|.+++|+  +++|++++. 
T Consensus       321 ~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~----------~~~~~~~v~~~~~~--~~~l~s~~~d  381 (445)
T 2ovr_B          321 LTSGMELK--D-NILVSGNADSTVKIWDIKTGQCL----QTLQG----------PNKHQSAVTCLQFN--KNFVITSSDD  381 (445)
T ss_dssp             CEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEE----EEECS----------TTSCSSCEEEEEEC--SSEEEEEETT
T ss_pred             cEEEEEEe--C-CEEEEEeCCCeEEEEECCCCcEE----EEEcc----------CCCCCCCEEEEEEC--CCEEEEEeCC
Confidence            88888874  4 78999999999999999887543    22222          12366889999996  678998875 


Q ss_pred             CcEEEEeccCCCCceeEee-----eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc----EEEEecCCC
Q 012721          348 MNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL----LRIFSHGVG  416 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~----i~iw~~~~~  416 (457)
                      |.|++||+.+ ++.+..+.     .+...+               .+++|+|++.+|++|+.||+    |.+||+...
T Consensus       382 g~v~iwd~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          382 GTVKLWDLKT-GEFIRNLVTLESGGSGGVV---------------WRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             SEEEEEETTT-CCEEEEEEECTTGGGTCEE---------------EEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CeEEEEECCC-CceeeeeeccccCCCCceE---------------EEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            9999999986 77777763     333333               78999999999999999998    999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.98  E-value=5e-30  Score=238.68  Aligned_cols=260  Identities=12%  Similarity=0.100  Sum_probs=192.9

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEee-cCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                      ++|.+++|  ++++++|++++.|+.|++||+.+++......+ .....+.+++|.+....++...              .
T Consensus         9 ~~i~~~~~--s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--------------~   72 (372)
T 1k8k_C            9 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG--------------T   72 (372)
T ss_dssp             SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE--------------T
T ss_pred             CCeEEEEE--CCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc--------------C
Confidence            88999999  78999999999999999999998863333333 2345678888876433332222              2


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce--eeeeecCCCcccCCCCc
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC--FNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~  269 (457)
                      ++.+++|+++...... ... ...|...|.+++|+|++++|+++ .|+.|++||++.....  ...      ...+|...
T Consensus        73 dg~i~vwd~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~~~~~  144 (372)
T 1k8k_C           73 DRNAYVWTLKGRTWKP-TLV-ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH------IKKPIRST  144 (372)
T ss_dssp             TSCEEEEEEETTEEEE-EEE-CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE------ECTTCCSC
T ss_pred             CCeEEEEECCCCeeee-eEE-eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee------eecccCCC
Confidence            5689999996543211 111 25789999999999999999999 9999999999843321  111      13668899


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc-ccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-  347 (457)
                      |.+++|+|++ .+|++++.||.|++||++......... ..+............+.+|...|.+++|+|++++|++++. 
T Consensus       145 i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  223 (372)
T 1k8k_C          145 VLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  223 (372)
T ss_dssp             EEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             eeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence            9999999999 999999999999999986432110000 0000000011112334577889999999999999999875 


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      +.|++||++. ++++..+..|...+               .+++|+|++.+|++| .|+.|++|++.+
T Consensus       224 ~~i~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          224 STVCLADADK-KMAVATLASETLPL---------------LAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             TEEEEEEGGG-TTEEEEEECSSCCE---------------EEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CEEEEEECCC-CceeEEEccCCCCe---------------EEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999999986 78888888887654               689999999988888 899999999987

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=2.9e-30  Score=239.24  Aligned_cols=290  Identities=8%  Similarity=-0.027  Sum_probs=193.3

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCC-------CeEEEEEeccccee------EE--EeecC-CCceeeeeeccccccccccC
Q 012721          114 EKINRVRWCAAPNGSMFILSTND-------KTIKLWKVRDQKVK------KI--KEMDH-FPFVSSENTLLAEKNFMNEH  177 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d-------~~i~vw~~~~~~~~------~~--~~~~~-~~~~~~~~~~~~~~~~~~~~  177 (457)
                      -+|.+++|  +|++.+|++|+.|       +.|++|++..+...      ..  ..+.. ...+.++++.   +..+...
T Consensus        15 ~PV~sv~f--s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g   89 (365)
T 4h5i_A           15 YPAYGAKF--LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVG   89 (365)
T ss_dssp             SCEEEEEE--EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEE
T ss_pred             CCEEEEEE--eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEE
Confidence            58999999  5799999998753       35999998754321      11  11111 1123333332   2222111


Q ss_pred             CCCCceeccCCccccccceEEEeccCcccc-cccee----eccCCCCCeeEEEeCCCCCEEEE--e-CCCeEEEEEcCCC
Q 012721          178 NPPSFAHGYHLEWTENMATKIANVGNSVHA-RCQKV----YPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEIS  249 (457)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~----~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~  249 (457)
                      .......+..+  ..+..+++|+++..... +....    ....+...+.+++|+|||+++++  + .|++|+|||++ .
T Consensus        90 ~~~~~~~l~s~--~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~-~  166 (365)
T 4h5i_A           90 CNENSTKITQG--KGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS-D  166 (365)
T ss_dssp             CCCCHHHHHHT--SCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT-T
T ss_pred             ECCCccEEEEe--cCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC-C
Confidence            11111111111  23457999998653221 11111    11345567899999999999764  4 78999999999 5


Q ss_pred             cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      .+....       + .|...|.+++|+|+| ++|++++.++ +.+|+..+++...    .           ....+|...
T Consensus       167 ~~~~~~-------~-~~~~~V~~v~fspdg-~~l~s~s~~~-~~~~~~~~~~~~~----~-----------~~~~~~~~~  221 (365)
T 4h5i_A          167 LTEKFE-------I-ETRGEVKDLHFSTDG-KVVAYITGSS-LEVISTVTGSCIA----R-----------KTDFDKNWS  221 (365)
T ss_dssp             TEEEEE-------E-ECSSCCCEEEECTTS-SEEEEECSSC-EEEEETTTCCEEE----E-----------ECCCCTTEE
T ss_pred             CcEEEE-------e-CCCCceEEEEEccCC-ceEEecccee-EEEEEeccCccee----e-----------eecCCCCCC
Confidence            555443       2 366789999999999 9999998655 6666666654321    0           012346678


Q ss_pred             eEEEEEccCCCeEEEEe-cC----cEEEEeccCCCCc---eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721          330 ISDIKFANDGQHLLSRD-YM----NLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (457)
Q Consensus       330 v~~~~~s~~g~~l~s~~-~~----~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  401 (457)
                      |.+++|+|+++++++++ ++    .+++|++......   ...+.+|...+               ++++|+|||++||+
T Consensus       222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V---------------~~~~~Spdg~~las  286 (365)
T 4h5i_A          222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI---------------TSMDVDMKGELAVL  286 (365)
T ss_dssp             EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE---------------EEEEECTTSCEEEE
T ss_pred             EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe---------------EeEEECCCCCceEE
Confidence            99999999999999875 33    5788888642211   23445555544               79999999999999


Q ss_pred             EeCCCcEEEEecCCCCceeeE-EecCCCcceeeeeccCCcceeccccccccccc
Q 012721          402 GSYSNLLRIFSHGVGSAGGIT-VEAGKNENRKPILQAAPRARRSSLSNLTRGLY  454 (457)
Q Consensus       402 ~~~dg~i~iw~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~  454 (457)
                      |+.|++|+|||+.++ +.+.. +.+|..+|++++|+||+...++  ++.+...|
T Consensus       287 gs~D~~V~iwd~~~~-~~~~~~~~gH~~~V~~v~fSpdg~~laS--~S~D~tvr  337 (365)
T 4h5i_A          287 ASNDNSIALVKLKDL-SMSKIFKQAHSFAITEVTISPDSTYVAS--VSAANTIH  337 (365)
T ss_dssp             EETTSCEEEEETTTT-EEEEEETTSSSSCEEEEEECTTSCEEEE--EETTSEEE
T ss_pred             EcCCCEEEEEECCCC-cEEEEecCcccCCEEEEEECCCCCEEEE--EeCCCeEE
Confidence            999999999999999 55554 5899999999999999998887  55555444

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.98  E-value=4.9e-32  Score=252.89  Aligned_cols=235  Identities=11%  Similarity=0.088  Sum_probs=180.1

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ++|++++|  ++++++|++++.|+.|++|++.++.....                                         
T Consensus        12 ~~v~~~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~~~-----------------------------------------   48 (377)
T 3dwl_C           12 KPSYEHAF--NSQRTEFVTTTATNQVELYEQDGNGWKHA-----------------------------------------   48 (377)
T ss_dssp             SCCSCCEE--CSSSSEEECCCSSSCBCEEEEETTEEEEC-----------------------------------------
T ss_pred             CcEEEEEE--CCCCCEEEEecCCCEEEEEEccCCceEEE-----------------------------------------
Confidence            77999999  78999999999999999999987632111                                         


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                                       .. +.+|...|.+++|+|++++|+++ .|+.|++||+.........     ..+.+|...|.+
T Consensus        49 -----------------~~-~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-----~~~~~~~~~v~~  105 (377)
T 3dwl_C           49 -----------------RT-FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT-----LVLLRLNRAATF  105 (377)
T ss_dssp             -----------------CC-BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE-----EECCCCSSCEEE
T ss_pred             -----------------EE-EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee-----eEecccCCceEE
Confidence                             11 16799999999999999999999 9999999999843301111     125679999999


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec-cccceEEEEEccCCCeEEEEec-CcE
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRDY-MNL  350 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~-~~i  350 (457)
                      ++|+|++ ++|++++.|+.|++||+++++..    ...          ..+.+ |...|.+++|+|++++|++++. +.|
T Consensus       106 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~----------~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i  170 (377)
T 3dwl_C          106 VRWSPNE-DKFAVGSGARVISVCYFEQENDW----WVS----------KHLKRPLRSTILSLDWHPNNVLLAAGCADRKA  170 (377)
T ss_dssp             EECCTTS-SCCEEEESSSCEEECCC-----C----CCC----------EEECSSCCSCEEEEEECTTSSEEEEEESSSCE
T ss_pred             EEECCCC-CEEEEEecCCeEEEEEECCcccc----eee----------eEeecccCCCeEEEEEcCCCCEEEEEeCCCEE
Confidence            9999999 99999999999999999886421    011          11233 7789999999999999999875 999


Q ss_pred             EEEeccCC-----------------CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          351 KLWDIRMD-----------------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       351 ~~wd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                      ++||++..                 ++++..+ .|...+               .+++|+|++++|++++.||.|++||+
T Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v---------------~~~~~sp~~~~l~~~~~d~~i~iwd~  234 (377)
T 3dwl_C          171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV---------------HAVGFSPSGNALAYAGHDSSVTIAYP  234 (377)
T ss_dssp             EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE---------------EEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred             EEEEEEecccCCCccccccccccchhhhhhcc-cCCceE---------------EEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            99998521                 2233333 454433               79999999999999999999999999


Q ss_pred             CCCCce---eeEEecCCCcceeeeeccCCcceecc
Q 012721          414 GVGSAG---GITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       414 ~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      .+++..   ...+.+|..++.+++|+|++...++|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  269 (377)
T 3dwl_C          235 SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG  269 (377)
T ss_dssp             CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred             CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence            998431   67889999999999999999877764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.2e-30  Score=239.65  Aligned_cols=242  Identities=16%  Similarity=0.167  Sum_probs=191.2

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (457)
                      .+..+.+|.            +.|.+++|  ++++++|++++.|+.|++|++..+......                   
T Consensus         3 ~~~~~~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------   49 (379)
T 3jrp_A            3 MVVIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLID-------------------   49 (379)
T ss_dssp             --CCEEECC------------CCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEE-------------------
T ss_pred             ccEEecCCc------------ccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcceeee-------------------
Confidence            445678888            89999999  789999999999999999999854322211                   


Q ss_pred             ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCC
Q 012721          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEIS  249 (457)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~  249 (457)
                                                             .+ .+|...|.+++|+++  +++|+++ .|+.|++||++ .
T Consensus        50 ---------------------------------------~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~   88 (379)
T 3jrp_A           50 ---------------------------------------TL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE-N   88 (379)
T ss_dssp             ---------------------------------------EE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE-T
T ss_pred             ---------------------------------------Ee-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC-C
Confidence                                                   11 679999999999987  8999999 99999999998 4


Q ss_pred             cceeeeeecCCCcccCCCCceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  327 (457)
                      +.....     ..+..|...|.+++|+|+  + .+|++++.||.|++||++.....    ..           ..+.+|.
T Consensus        89 ~~~~~~-----~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~----~~-----------~~~~~~~  147 (379)
T 3jrp_A           89 GRWSQI-----AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT----SP-----------IIIDAHA  147 (379)
T ss_dssp             TEEEEE-----EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCC----CE-----------EEEECCT
T ss_pred             CceeEe-----eeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCce----ee-----------EEecCCC
Confidence            432111     125678999999999999  7 99999999999999999876321    11           1134577


Q ss_pred             cceEEEEEcc-------------CCCeEEEEec-CcEEEEeccCCCC---ceeEeeeccccccccccccCCCCccccceE
Q 012721          328 ASISDIKFAN-------------DGQHLLSRDY-MNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFEC  390 (457)
Q Consensus       328 ~~v~~~~~s~-------------~g~~l~s~~~-~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  390 (457)
                      ..|.+++|+|             ++.+|++++. +.|++||++....   ....+.+|...+               .++
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v---------------~~~  212 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDV  212 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEE
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE---------------eEE
Confidence            8999999999             6899998875 9999999985322   334566676654               699


Q ss_pred             EEcCC---CcEEEEEeCCCcEEEEecCCCCc----eeeEEecCCCcceeeeeccCCcceec
Q 012721          391 SVSGD---GLHFATGSYSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       391 ~~s~d---~~~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +|+|+   +.+|++++.||.|++||+.++..    .......|..++.+++|+|++....+
T Consensus       213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  273 (379)
T 3jrp_A          213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  273 (379)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred             EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEE
Confidence            99999   89999999999999999998732    22223448899999999999987766

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=1.8e-30  Score=243.29  Aligned_cols=256  Identities=12%  Similarity=0.066  Sum_probs=168.9

Q ss_pred             cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccC
Q 012721          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (457)
Q Consensus       124 s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  203 (457)
                      ++++.++++++.|++|++||..++........                                                
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~------------------------------------------------  129 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVL------------------------------------------------  129 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEE------------------------------------------------
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeee------------------------------------------------
Confidence            35667899999999999999998765432211                                                


Q ss_pred             ccccccceeeccCCCCCeeEEEeCC--------CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEE
Q 012721          204 SVHARCQKVYPHAHDFNINSISNNS--------DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  274 (457)
Q Consensus       204 ~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  274 (457)
                             .. +.+|...|++++|+|        ++++|++| .|++|+|||++.......        +.+|...+.+++
T Consensus       130 -------~~-~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------~~~~~~~v~~v~  193 (393)
T 4gq1_A          130 -------GG-KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------GYPLSSPGISVQ  193 (393)
T ss_dssp             -------CT-TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------EEECSSCEEEEE
T ss_pred             -------cc-cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------ecCCCCCcEEEE
Confidence                   11 278999999999987        78999999 999999999984443333        356888999999


Q ss_pred             EecCCccEEEEEccCCeEEEEEccCCeeeccccccc--------cccccccCcccceeccccceEEEEEc-cCCCeEEEE
Q 012721          275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL--------RDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSR  345 (457)
Q Consensus       275 ~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~  345 (457)
                      |+|+++.+|++++.||+|++||+++++.........        ..............+|...+.++.|+ |+++.|+++
T Consensus       194 ~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~  273 (393)
T 4gq1_A          194 FRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM  273 (393)
T ss_dssp             EETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE
T ss_pred             ECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE
Confidence            999985689999999999999999875432111100        00000011112345788899999987 799999998


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccccccccccC---CCCccccceEEEcC--CCcEEEEEeCCCcEEEEecCCCCce
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN---NDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAG  419 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~--d~~~l~s~~~dg~i~iw~~~~~~~~  419 (457)
                      +. +.+++||+.. ++....+..|...+........   .........+.|+|  ++.++++|+.||+|++||+.++ ..
T Consensus       274 s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~-~~  351 (393)
T 4gq1_A          274 CKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK-DS  351 (393)
T ss_dssp             CTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT-TC
T ss_pred             eCCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC-cE
Confidence            75 9999999975 5555555444433221100000   00000012345554  4567888999999999999998 56


Q ss_pred             eeEEecCCCcceeeeeccCCcceecc
Q 012721          420 GITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       420 ~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      ...+.+|..+|++++|+|+++..+++
T Consensus       352 ~~~~~~~~~~V~svafspdG~~LA~a  377 (393)
T 4gq1_A          352 NSIPIQLGMPIVDFCWHQDGSHLAIA  377 (393)
T ss_dssp             CEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             EEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            67778899999999999999988774

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=7.8e-30  Score=235.57  Aligned_cols=300  Identities=12%  Similarity=0.095  Sum_probs=195.7

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|||++||+|+.++ ++||++++.+..                             ...+.       
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-----------------------------~~~~~-------   58 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-----------------------------MSQEM-------   58 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-----------------------------EEEEC-------
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-----------------------------eeeec-------
Confidence            34899999999999999999998775 789998765431                             11111       


Q ss_pred             cccccCcEEEEEEEecCCCCEE-EEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                           ..+..+++  .++++.+ ++++.|++|++||..+++....+.  ....+.++.+.+.. ..              
T Consensus        59 -----~~~~~~~~--~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~-~~--------------  114 (355)
T 3vu4_A           59 -----RHLSKVRM--LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF-IV--------------  114 (355)
T ss_dssp             -----SCCCEEEE--CTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE-EE--------------
T ss_pred             -----CCeEEEEE--cCCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE-EE--------------
Confidence                 23667777  4555566 567888999999999988776554  34467777665321 00              


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE--e-CCCeEEEEEcCCCcceee------eeec
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFN------IVDM  258 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~------~~~~  258 (457)
                        ...++.+++|++....  +.+..+ ..   +...+++++  .++++  | .||.|++||++.......      ....
T Consensus       115 --~~~~~~i~i~d~~~~~--~~~~~~-~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~  184 (355)
T 3vu4_A          115 --VSYGDVISVFKFGNPW--KRITDD-IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI  184 (355)
T ss_dssp             --EEETTEEEEEESSTTC--CBSSCC-EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC----------------
T ss_pred             --EEEcCEEEEEECCCCc--eeeEEe-cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence              0124579999997541  222222 11   344455666  45554  6 899999999984320000      0000


Q ss_pred             C--CCcccCCCCceEEEEEecCCccEEEEEccCCe-EEEEEccCCeeeccccccccccccccCcccceec-cccceEEEE
Q 012721          259 K--PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIK  334 (457)
Q Consensus       259 ~--~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~  334 (457)
                      .  ...+.+|...|.+++|+|++ .+|++|+.||+ |++||+++++..    ..+.            .+ |...|.+++
T Consensus       185 ~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~----~~~~------------~g~h~~~v~~~~  247 (355)
T 3vu4_A          185 LGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLV----REFR------------RGLDRADVVDMK  247 (355)
T ss_dssp             --CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEE----EEEE------------CTTCCSCEEEEE
T ss_pred             CcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEE------------cCCCCCcEEEEE
Confidence            0  02368899999999999999 99999999998 999999987543    2222            13 678999999


Q ss_pred             EccCCCeEEEEec-CcEEEEeccCCCC-ceeEeee-----ccccccccccc-cCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          335 FANDGQHLLSRDY-MNLKLWDIRMDST-PVATFKI-----HEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       335 ~s~~g~~l~s~~~-~~i~~wd~~~~~~-~~~~~~~-----~~~~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                      |+|+|++|+++++ +.|++||++.... ....+..     +.......+.+ ...........++|++|+++|++++.||
T Consensus       248 ~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg  327 (355)
T 3vu4_A          248 WSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR  327 (355)
T ss_dssp             ECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred             ECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence            9999999999875 9999999974211 1111111     00000000000 0000111114689999999999999999


Q ss_pred             cEEEEecCCC
Q 012721          407 LLRIFSHGVG  416 (457)
Q Consensus       407 ~i~iw~~~~~  416 (457)
                      .+++|++..+
T Consensus       328 ~~~~~~~~~~  337 (355)
T 3vu4_A          328 MIETFKVVFD  337 (355)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEEcC
Confidence            9999998765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.4e-29  Score=233.01  Aligned_cols=250  Identities=18%  Similarity=0.113  Sum_probs=193.6

Q ss_pred             eeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccc
Q 012721           96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (457)
Q Consensus        96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (457)
                      .+.+|.            +.|++++|  ++++.+|++++.|+.|++|++.++.....                       
T Consensus         6 ~~~gH~------------~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----------------------   48 (351)
T 3f3f_A            6 FDSGHD------------DLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSNWE-----------------------   48 (351)
T ss_dssp             EECCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCCEE-----------------------
T ss_pred             cCcccc------------cceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCcce-----------------------
Confidence            467788            88999999  78999999999999999999987532211                       


Q ss_pred             cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCc--
Q 012721          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD--  250 (457)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~--  250 (457)
                                                       ....+ .+|...|.+++|+|  ++++|+++ .|+.|++||++...  
T Consensus        49 ---------------------------------~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~   94 (351)
T 3f3f_A           49 ---------------------------------LSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE   94 (351)
T ss_dssp             ---------------------------------EEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCT
T ss_pred             ---------------------------------eccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccc
Confidence                                             11111 57999999999999  69999999 99999999998432  


Q ss_pred             ------ceeeeeecCCCcccCCCCceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccc
Q 012721          251 ------QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (457)
Q Consensus       251 ------~~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (457)
                            ....       .+.+|...|.+++|+|+  + .+|++++.||.|++||+++++..    ..+............
T Consensus        95 ~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           95 CSGRRWNKLC-------TLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDL----RSWTLTSEMKVLSIP  162 (351)
T ss_dssp             TSSCSEEEEE-------EECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCT----TCCEEEEEEESCSCC
T ss_pred             ccccCcceee-------eecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHh----ccccccccccccccc
Confidence                  2222       25789999999999999  8 99999999999999999987543    222110111111112


Q ss_pred             eeccccceEEEEEccC---CCeEEEEec-CcEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721          323 FTEIIASISDIKFAND---GQHLLSRDY-MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (457)
Q Consensus       323 ~~~h~~~v~~~~~s~~---g~~l~s~~~-~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~  396 (457)
                      ...|...+.+++|+|+   +.++++++. +.+.+|+... ++.  +..+.+|...+               ++++|+|++
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i---------------~~~~~~p~~  226 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLI---------------RSISWAPSI  226 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCE---------------EEEEECCCS
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcce---------------eEEEECCCC
Confidence            2357788999999997   889998875 7787776653 443  55666776654               699999998


Q ss_pred             ----cEEEEEeCCCcEEEEecCCCC---------------------------------------------ceeeEEecCC
Q 012721          397 ----LHFATGSYSNLLRIFSHGVGS---------------------------------------------AGGITVEAGK  427 (457)
Q Consensus       397 ----~~l~s~~~dg~i~iw~~~~~~---------------------------------------------~~~~~~~~~~  427 (457)
                          .+|++++.||.|++||+.++.                                             .....+.+|.
T Consensus       227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  306 (351)
T 3f3f_A          227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN  306 (351)
T ss_dssp             SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred             CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence                899999999999999998742                                             4566778999


Q ss_pred             CcceeeeeccCCcceec
Q 012721          428 NENRKPILQAAPRARRS  444 (457)
Q Consensus       428 ~~v~~~~~~p~~~~~~~  444 (457)
                      .+|.+++|+|++...++
T Consensus       307 ~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          307 GEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             SCEEEEEECSSSCCEEE
T ss_pred             ccEEEEEEcCCCCEEEE
Confidence            99999999999987776

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=4.3e-29  Score=235.24  Aligned_cols=259  Identities=11%  Similarity=0.120  Sum_probs=194.6

Q ss_pred             ccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        30 ~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .|...|.+++|+| ++.+|++++.||.|++||+.+++.                           ...+. +.       
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------------------~~~~~-~~-------  141 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT---------------------------ADVFN-FE-------  141 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE---------------------------EEEEE-CS-------
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc---------------------------ceecc-CC-------
Confidence            3899999999999 778999999999999999987653                           22222 33       


Q ss_pred             cccccCcEEEEEEEec-CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          109 SLEIEEKINRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s-~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                           ..+.++.|.|. +++.++++++.|+.|++||+.+++....+                                  
T Consensus       142 -----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~----------------------------------  182 (408)
T 4a11_B          142 -----ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL----------------------------------  182 (408)
T ss_dssp             -----SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE----------------------------------
T ss_pred             -----CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee----------------------------------
Confidence                 67899999542 24559999999999999999877543321                                  


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecC------
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMK------  259 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~------  259 (457)
                                                 .+|...|.+++|+|++. +|+++ .|+.|++||++........+...      
T Consensus       183 ---------------------------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  235 (408)
T 4a11_B          183 ---------------------------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ  235 (408)
T ss_dssp             ---------------------------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred             ---------------------------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence                                       57888999999999998 47888 99999999998544344332110      


Q ss_pred             --CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721          260 --PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (457)
Q Consensus       260 --~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  337 (457)
                        .....+|...|.+++|+|++ .+|++++.||.|++||+++++...    ....+...       .........+...+
T Consensus       236 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~  303 (408)
T 4a11_B          236 AVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTL----VNYGKVCN-------NSKKGLKFTVSCGC  303 (408)
T ss_dssp             CTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCC----CCCCCCCC-------CCSSCCCCEECCSS
T ss_pred             eeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccce----eccccccc-------cccccceeEEecCC
Confidence              01236788999999999999 999999999999999999875431    11110000       00011122233334


Q ss_pred             CCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721          338 DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       338 ~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                      ...+++++.++.|++||+.. ++++..+.+|...+               ++++|+|++++|++++.||.|++|++.+++
T Consensus       304 ~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          304 SSEFVFVPYGSTIAVYTVYS-GEQITMLKGHYKTV---------------DCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             SSCEEEEEETTEEEEEETTT-CCEEEEECCCSSCE---------------EEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             CceEEEEecCCEEEEEECcC-CcceeeeccCCCeE---------------EEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence            45555566679999999986 88899999888765               689999999999999999999999999883

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.2e-29  Score=238.92  Aligned_cols=254  Identities=15%  Similarity=0.186  Sum_probs=191.4

Q ss_pred             ccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          108 KSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                      ..+.|.+.|++++|+  ++ +.+|++++.||.|++|++........                                  
T Consensus       123 ~~~~h~~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~----------------------------------  166 (430)
T 2xyi_A          123 IKINHEGEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPE----------------------------------  166 (430)
T ss_dssp             EEEEESSCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCC----------------------------------
T ss_pred             EEEcCCCcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccC----------------------------------
Confidence            334455899999995  55 67899999999999999976311100                                  


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                      ......++..+ .+|...|.+++|+|++. +|++| .||.|++||+.........+. ....+.
T Consensus       167 ----------------~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~  228 (430)
T 2xyi_A          167 ----------------PSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFT  228 (430)
T ss_dssp             ----------------TTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE-CSEEEC
T ss_pred             ----------------ccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec-cceeec
Confidence                            00001222223 68999999999999988 99999 999999999984222111110 012356


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-eEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL  343 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~  343 (457)
                      +|...|.+++|+|+++.+|++++.||.|++||++++...    ..          ...+..|...|++++|+|+++ +|+
T Consensus       229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~----~~----------~~~~~~~~~~v~~i~~~p~~~~~l~  294 (430)
T 2xyi_A          229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS----KP----------SHTVDAHTAEVNCLSFNPYSEFILA  294 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS----SC----------SEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC----cc----------eeEeecCCCCeEEEEeCCCCCCEEE
Confidence            899999999999955489999999999999999976311    01          112345778999999999997 577


Q ss_pred             EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEEecCCCC----
Q 012721          344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGS----  417 (457)
Q Consensus       344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw~~~~~~----  417 (457)
                      +|+. |.|++||++....++..+..|...+               ++++|+|++. +|++++.|+.|+|||+....    
T Consensus       295 tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v---------------~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          295 TGSADKTVALWDLRNLKLKLHSFESHKDEI---------------FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             EEETTSEEEEEETTCTTSCSEEEECCSSCE---------------EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             EEeCCCeEEEEeCCCCCCCeEEeecCCCCE---------------EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            7765 9999999986567788888887765               6999999985 79999999999999998732    


Q ss_pred             ---------ceeeEEecCCCcceeeeeccCCc-ceec
Q 012721          418 ---------AGGITVEAGKNENRKPILQAAPR-ARRS  444 (457)
Q Consensus       418 ---------~~~~~~~~~~~~v~~~~~~p~~~-~~~~  444 (457)
                               .......+|...+.+++|+|+++ ...+
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s  396 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS  396 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred             ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence                     45677789999999999999998 4443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.7e-30  Score=242.07  Aligned_cols=265  Identities=8%  Similarity=-0.048  Sum_probs=173.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...+....+++++.+||+|+.|++|+|||+.+++..                      ....+..+.||.          
T Consensus        89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------------~~~~~~~~~gH~----------  136 (393)
T 4gq1_A           89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII----------------------TQHVLGGKSGHH----------  136 (393)
T ss_dssp             --------CCEEEEEEEEEETTSCEEEEEEETTEEE----------------------EEEEECTTTSCS----------
T ss_pred             CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccc----------------------eeeeecccCCCC----------
Confidence            334444455556778999999999999999887642                      223456688999          


Q ss_pred             ccCcEEEEEEEec------CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          112 IEEKINRVRWCAA------PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       112 ~~~~V~~v~~~~s------~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                        +.|++|+|.|.      .++++|++++.|++|+|||+.++......                                
T Consensus       137 --~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~--------------------------------  182 (393)
T 4gq1_A          137 --NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG--------------------------------  182 (393)
T ss_dssp             --SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE--------------------------------
T ss_pred             --CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee--------------------------------
Confidence              88999999651      26889999999999999999876543221                                


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeee------
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVD------  257 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~------  257 (457)
                                                   ..|...|.+++|+|++. +|+++ .|++|++||++..........      
T Consensus       183 -----------------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~  233 (393)
T 4gq1_A          183 -----------------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN  233 (393)
T ss_dssp             -----------------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred             -----------------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence                                         46778999999999874 78888 999999999984332211100      


Q ss_pred             -------cC----CCcccCCCCceEEEEEe-cCCccEEEEEccCCeEEEEEccCCeeecccccccccccccc-----C-c
Q 012721          258 -------MK----PSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH-----G-S  319 (457)
Q Consensus       258 -------~~----~~~~~~~~~~i~~v~~~-p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~-----~-~  319 (457)
                             ..    .....+|...+.++.|. |++ ..|++++.|+++++||+..++..    ..+..+....     . .
T Consensus       234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~~~~  308 (393)
T 4gq1_A          234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNLLPN  308 (393)
T ss_dssp             CCSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCS
T ss_pred             ceEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEEccc
Confidence                   00    01135678889999997 687 99999999999999999876533    1111100000     0 0


Q ss_pred             ccceeccccceEEEEEcc--CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721          320 KSFFTEIIASISDIKFAN--DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (457)
Q Consensus       320 ~~~~~~h~~~v~~~~~s~--~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~  396 (457)
                      ......+...+ ...|+|  ++.++++|++ +.|++||+.. ++.......|...+               .+++|+|||
T Consensus       309 ~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V---------------~svafspdG  371 (393)
T 4gq1_A          309 VQGISLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPI---------------VDFCWHQDG  371 (393)
T ss_dssp             EEEECSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCE---------------EEEEECTTS
T ss_pred             cccccccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcE---------------EEEEEcCCC
Confidence            00111112222 334444  3445667764 9999999986 67777777777654               699999999


Q ss_pred             cEEEEEeCCCcEEEEecC
Q 012721          397 LHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       397 ~~l~s~~~dg~i~iw~~~  414 (457)
                      ++||+++++| +.+|.+.
T Consensus       372 ~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          372 SHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             SEEEEEESSE-EEEEEEG
T ss_pred             CEEEEEeCCC-eEEEEEe
Confidence            9999999876 5566653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.9e-30  Score=239.73  Aligned_cols=262  Identities=7%  Similarity=-0.045  Sum_probs=191.3

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|...|++++|+|+|       .++.+.+|+.+.....                            .+ .|.       
T Consensus        49 ~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~----------------------------~~-~~~-------   85 (588)
T 2j04_A           49 NCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL----------------------------NS-QPV-------   85 (588)
T ss_dssp             SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS----------------------------TT-SCS-------
T ss_pred             cCCCccEEEEEECCCC-------CcceEEEEeCCCceEe----------------------------ec-CCC-------
Confidence            3699999999999999       4666666654433221                            11 334       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++|  +|+|++||+++.||.|++|+...  .....                                   
T Consensus        86 -----~~V~~vaw--SPdG~~LAs~s~dg~V~iwd~~~--~l~~l-----------------------------------  121 (588)
T 2j04_A           86 -----CYPRVCKP--SPIDDWMAVLSNNGNVSVFKDNK--MLTNL-----------------------------------  121 (588)
T ss_dssp             -----CCEEEEEE--CSSSSCEEEEETTSCEEEEETTE--EEEEC-----------------------------------
T ss_pred             -----CcEEEEEE--CCCCCEEEEEeCCCcEEEEeCCc--eeeec-----------------------------------
Confidence                 78999999  89999999999999999999543  11111                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCC-----CCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce-------eee
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHD-----FNINSISNNSDCETFVSA-DDLRINLWNLEISDQC-------FNI  255 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-------~~~  255 (457)
                                                . |.     ..|.+++|+|||++|++| .||+|++||+.. +..       +..
T Consensus       122 --------------------------~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-~~l~~~~~i~l~t  173 (588)
T 2j04_A          122 --------------------------D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-NSENTPEFYFESS  173 (588)
T ss_dssp             --------------------------C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC-CTTTCCCCEEEEE
T ss_pred             --------------------------c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC-Cccccccceeeee
Confidence                                      2 33     259999999999999999 999999999984 432       233


Q ss_pred             eecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (457)
Q Consensus       256 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  335 (457)
                      +..   ...+|...|.+++|+|+|   +++++.|++|++||+.+++.. .....+.            .+|...|.+++|
T Consensus       174 i~~---~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL~------------~~h~~~V~svaF  234 (588)
T 2j04_A          174 IRL---SDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMIQ------------NASRRKITDLKI  234 (588)
T ss_dssp             EEC---SCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEEE------------CCCSSCCCCEEE
T ss_pred             eec---ccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeeec------------ccccCcEEEEEE
Confidence            211   136788999999999997   888899999999999876421 0001111            245678999999


Q ss_pred             ccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE--cCCCcEEEEEeCCCcEEEEec
Q 012721          336 ANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV--SGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       336 s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~d~~~l~s~~~dg~i~iw~~  413 (457)
                      +  |++||+++++.|++||+.. ++......+|...+               ..++|  +||+..|+++++||+ ++|..
T Consensus       235 s--g~~LASa~~~tIkLWd~~~-~~~~~~~~gh~~~V---------------~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          235 V--DYKVVLTCPGYVHKIDLKN-YSISSLKTGSLENF---------------HIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             E--TTEEEEECSSEEEEEETTT-TEEEEEECSCCSCC---------------CEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             E--CCEEEEEeCCeEEEEECCC-CeEEEEEcCCCceE---------------EEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            9  6899988889999999974 44423332677765               68999  999999999999999 88886


Q ss_pred             CC-----CC-----------------ceeeEEecCCCcceeeeeccCCcceec
Q 012721          414 GV-----GS-----------------AGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       414 ~~-----~~-----------------~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +.     +.                 .....+++ ...|.+++|+|+|...+.
T Consensus       296 d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~  347 (588)
T 2j04_A          296 DELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAI  347 (588)
T ss_dssp             SSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEE
T ss_pred             ccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEE
Confidence            31     10                 11222333 456899999999977665

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=8.6e-29  Score=232.82  Aligned_cols=265  Identities=14%  Similarity=0.133  Sum_probs=208.0

Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      .+.++.|  ++  ..+++++.|+.|++|++.+++............+.+++|++....++...              .++
T Consensus        95 ~~~~~~~--s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------------~dg  156 (401)
T 4aez_A           95 YLNLLDW--SN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL--------------GNG  156 (401)
T ss_dssp             TCBCEEE--CT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE--------------TTS
T ss_pred             eEEEEee--cC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC--------------CCC
Confidence            3566777  43  45888899999999999999888877776677789999887433333322              256


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v  273 (457)
                      .+++|+++..   +.+..+ .+|...|.+++|  ++.+|+++ .|+.|++||++........       +.+|...|.++
T Consensus       157 ~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~  223 (401)
T 4aez_A          157 LVDIYDVESQ---TKLRTM-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT-------LQGHSSEVCGL  223 (401)
T ss_dssp             CEEEEETTTC---CEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEE
T ss_pred             eEEEEECcCC---eEEEEe-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE-------EcCCCCCeeEE
Confidence            8999998753   445555 689999999999  46799998 9999999999854544443       57899999999


Q ss_pred             EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-eEEEEe---cCc
Q 012721          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD---YMN  349 (457)
Q Consensus       274 ~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~---~~~  349 (457)
                      +|+|++ .+|++++.||.|++||+++++..    ..             +..|...|.+++|+|++. ++++++   ++.
T Consensus       224 ~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~-------------~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~  285 (401)
T 4aez_A          224 AWRSDG-LQLASGGNDNVVQIWDARSSIPK----FT-------------KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ  285 (401)
T ss_dssp             EECTTS-SEEEEEETTSCEEEEETTCSSEE----EE-------------ECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred             EEcCCC-CEEEEEeCCCeEEEccCCCCCcc----EE-------------ecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence            999999 99999999999999999986432    11             234678899999999775 555654   599


Q ss_pred             EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE--eCCCcEEEEecCCCCc-eeeEEecC
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVGSA-GGITVEAG  426 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~--~~dg~i~iw~~~~~~~-~~~~~~~~  426 (457)
                      |++||++. ++++..+..+.. +               .+++|+|++++|+++  +.||.|++|++.+++. ....+.+|
T Consensus       286 i~i~d~~~-~~~~~~~~~~~~-v---------------~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h  348 (401)
T 4aez_A          286 IHFWNAAT-GARVNTVDAGSQ-V---------------TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH  348 (401)
T ss_dssp             EEEEETTT-CCEEEEEECSSC-E---------------EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEECCC-CCEEEEEeCCCc-E---------------EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC
Confidence            99999986 777777754332 2               689999999999994  4899999999998632 23447799


Q ss_pred             CCcceeeeeccCCcceecc
Q 012721          427 KNENRKPILQAAPRARRSS  445 (457)
Q Consensus       427 ~~~v~~~~~~p~~~~~~~~  445 (457)
                      ..++.+++|+|+++...++
T Consensus       349 ~~~v~~~~~s~dg~~l~s~  367 (401)
T 4aez_A          349 DTRVLYSALSPDGRILSTA  367 (401)
T ss_dssp             SSCCCEEEECTTSSEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEE
Confidence            9999999999999877763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=5.6e-29  Score=228.84  Aligned_cols=258  Identities=14%  Similarity=0.110  Sum_probs=192.4

Q ss_pred             ccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEe-cCCccCCCcccchhhhhhcccccccCCCccceeeeecc--CCcc
Q 012721           28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET-VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS--HEPE  103 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~  103 (457)
                      ...|...|.+++|+|+++ +|++|+.||.|++|++ .+++.                            ..+.+  |.  
T Consensus        52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----------------------------~~~~~~~~~--  101 (342)
T 1yfq_A           52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF----------------------------QALTNNEAN--  101 (342)
T ss_dssp             EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE----------------------------EECBSCCCC--
T ss_pred             eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce----------------------------EeccccCCC--
Confidence            346899999999999999 9999999999999998 76642                            35666  77  


Q ss_pred             ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       104 ~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                                ..|.+++|.  + +.+|++++.|+.|++||+.+........                             
T Consensus       102 ----------~~v~~l~~~--~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------  139 (342)
T 1yfq_A          102 ----------LGICRICKY--G-DDKLIAASWDGLIEVIDPRNYGDGVIAV-----------------------------  139 (342)
T ss_dssp             ----------SCEEEEEEE--T-TTEEEEEETTSEEEEECHHHHTTBCEEE-----------------------------
T ss_pred             ----------CceEEEEeC--C-CCEEEEEcCCCeEEEEcccccccccccc-----------------------------
Confidence                      889999994  6 8899999999999999987611000000                             


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC-CcceeeeeecCCC
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-SDQCFNIVDMKPS  261 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~  261 (457)
                                            ..+++..  ..|...|.+++|+|++  ++++ .|+.|++||++. ........     
T Consensus       140 ----------------------~~~~~~~--~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~-----  188 (342)
T 1yfq_A          140 ----------------------KNLNSNN--TKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE-----  188 (342)
T ss_dssp             ----------------------EESCSSS--SSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE-----
T ss_pred             ----------------------cCCeeeE--EeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee-----
Confidence                                  0011111  2377899999999887  7777 999999999984 22222221     


Q ss_pred             cccCCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCC--eeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721          262 NMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  338 (457)
                       ...|...+.+++|+| ++ .+|++++.||.|++||++..  .........+..|....    .-.+|...|.+++|+|+
T Consensus       189 -~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~~  262 (342)
T 1yfq_A          189 -ESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL----KDTNLAYPVNSIEFSPR  262 (342)
T ss_dssp             -ECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT----TCCSSCCCEEEEEECTT
T ss_pred             -ecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc----cccccceeEEEEEEcCC
Confidence             346778999999999 98 99999999999999999875  10011112333211100    01134558999999999


Q ss_pred             CCeEEEEec-CcEEEEeccCCCCceeEeeec-cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc-EEEEe
Q 012721          339 GQHLLSRDY-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL-LRIFS  412 (457)
Q Consensus       339 g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~-i~iw~  412 (457)
                      +++|++++. |.|++||+.. ++.+..+..| ...+               .+++  |++++|++++.||. .+.|.
T Consensus       263 ~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~h~~~v---------------~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          263 HKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDSV---------------VKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             TCCEEEEETTSCEEEEETTT-TEEEEECCCCSSSEE---------------EEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             CCEEEEecCCceEEEEcCcc-HhHhhhhhcccCCCc---------------eEec--CCCCeEEEEecCCccccccc
Confidence            999999875 9999999986 7888888887 6654               5677  99999999999998 55555

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=6.4e-28  Score=213.16  Aligned_cols=275  Identities=9%  Similarity=0.070  Sum_probs=184.3

Q ss_pred             ceEEEEECCCCC---EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           34 IVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        34 ~V~~~~~s~~~~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      .+.++-|-..|-   .++++++. .|++|+..+..                        .++.+.+++.|+...--+.-+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~------------------------~~~~~~~~~~~~~~v~~~~~~   95 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACED-VVSLWKALDAW------------------------QWEKLYTWHFAEVPVLQIVPV   95 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEESS-EEEEEEESSSS------------------------BEEEEEEEECCSSCEEEECCC
T ss_pred             EEeeeeeccCCCCccEEEEeccc-eEEEcccCCCc------------------------cceeeEEEeccCceeEEEEEc
Confidence            356666655443   67788764 89999998863                        445666777776221111000


Q ss_pred             c-------------ccCcEEEEEEEecCC----CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccc
Q 012721          111 E-------------IEEKINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (457)
Q Consensus       111 ~-------------~~~~V~~v~~~~s~~----~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (457)
                      .             +...|..+++  +|+    ++.+++++.+  +++|++.+++........                 
T Consensus        96 ~~~~~~~~~~~~~~~~~~v~sla~--spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g-----------------  154 (356)
T 2w18_A           96 PDVYNLVCVALGNLEIREIRALFC--SSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTL-----------------  154 (356)
T ss_dssp             TTCCSCEEEEECSSSEEEEEEECC--------CCEEEEEEEEE--EEEEEETTTEEEEEESSS-----------------
T ss_pred             CcccceeeeeeccccccceEEEEE--CCCccccccEEEeCCCe--EEEEecCCCcEEEecccC-----------------
Confidence            0             1136778888  678    8888887744  788998776654432111                 


Q ss_pred             cccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCEEEEe-CCCeEEEEEcCCC
Q 012721          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEIS  249 (457)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~  249 (457)
                                        .++.|++|++...  ++.+..+ ..|...++.++|++   ++.+|+++ .|++|+|||++ .
T Consensus       155 ------------------~d~~V~~~~~s~d--G~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~-T  212 (356)
T 2w18_A          155 ------------------SDQQVEVMTFAED--GGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK-T  212 (356)
T ss_dssp             ------------------TTCEEEEEEECTT--SCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-T
T ss_pred             ------------------CCCcEEEEEECCC--Cceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-C
Confidence                              1446888888532  3344443 67888999999998   78999998 99999999999 6


Q ss_pred             cceeeeeecCCCcccCC---CCceEEEEEecCCccEE------------EEEccCCeEEEEEccCCeeeccccccccccc
Q 012721          250 DQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLL------------AYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~---~~~i~~v~~~p~~~~~l------------~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.+..+       .+|   ...+.+++|+|+| .++            ++|+.|++|++||..+++..    .++.. .
T Consensus       213 Gk~l~tL-------~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~-~  279 (356)
T 2w18_A          213 GQLLKKM-------HIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLY-C  279 (356)
T ss_dssp             CCEEEEE-------ECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEE-C
T ss_pred             CcEEEEE-------cCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEe-e
Confidence            7777664       332   3467888999998 765            56788999999999988654    22110 0


Q ss_pred             cccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc
Q 012721          315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  393 (457)
Q Consensus       315 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  393 (457)
                             ...+|...+.+..++  +.++++++ |++|+|||+.+ ++++.++.+|...+.              ..++|+
T Consensus       280 -------~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vv--------------s~vafS  335 (356)
T 2w18_A          280 -------LPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHW--------------SFVKWS  335 (356)
T ss_dssp             -------CCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCC--------------CEEEEC
T ss_pred             -------ccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeE--------------EEEEEC
Confidence                   002344444444444  88899987 59999999986 899999998876431              358999


Q ss_pred             CCCcEEEEEeCCCcEEEEec
Q 012721          394 GDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       394 ~d~~~l~s~~~dg~i~iw~~  413 (457)
                      |||++|++|+.|++|+|||+
T Consensus       336 PDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          336 GTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEECCCcEEEecC
Confidence            99999999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.4e-28  Score=228.27  Aligned_cols=260  Identities=15%  Similarity=0.162  Sum_probs=191.4

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++++|+|++++|++|+.||.|++||+.+++.                            ..+.+|.       
T Consensus        83 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----------------------------~~~~~~~-------  127 (368)
T 3mmy_A           83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA----------------------------IQIAQHD-------  127 (368)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------------------------EEEEECS-------
T ss_pred             ccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc----------------------------eeecccc-------
Confidence            34899999999999999999999999999999987653                            2345677       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++|++++++.+|++++.|+.|++||+.+++....+.                                  
T Consensus       128 -----~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------------------------------  168 (368)
T 3mmy_A          128 -----APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ----------------------------------  168 (368)
T ss_dssp             -----SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE----------------------------------
T ss_pred             -----CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe----------------------------------
Confidence                 88999999888899999999999999999998876544322                                  


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                 .+ ..+.++.+.+  ..++++ .++.+++|+++.........      ...+.
T Consensus       169 ---------------------------~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~  212 (368)
T 3mmy_A          169 ---------------------------LP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRI------ESPLK  212 (368)
T ss_dssp             ---------------------------CS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEEC------CCSCS
T ss_pred             ---------------------------cC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhc------ccccc
Confidence                                       12 2455666653  466677 99999999998544443332      12344


Q ss_pred             CceEEEEEecCC---ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          268 EVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       268 ~~i~~v~~~p~~---~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      ..+.++++.++.   +..+++++.||.|++||++..... .....+..|. .........+|...|++++|+|++++|++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  290 (368)
T 3mmy_A          213 HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHR-SNGTNTSAPQDIYAVNGIAFHPVHGTLAT  290 (368)
T ss_dssp             SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSE-EC----CCCEEECCEEEEEECTTTCCEEE
T ss_pred             CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeee-cccccccccccccceEEEEEecCCCEEEE
Confidence            555666666554   123999999999999999876321 1112223211 11111222344458999999999999999


Q ss_pred             Eec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      ++. |.|++||++. ++++..+..|...+               .+++|+|++++|++++.|+..+.|++.+.
T Consensus       291 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          291 VGSDGRFSFWDKDA-RTKLKTSEQLDQPI---------------SACCFNHNGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             EETTSCEEEEETTT-TEEEEECCCCSSCE---------------EEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred             EccCCeEEEEECCC-CcEEEEecCCCCCc---------------eEEEECCCCCeEEEEecccccccccccCC
Confidence            874 9999999985 78888888887765               69999999999999999987666665443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.9e-28  Score=231.88  Aligned_cols=259  Identities=9%  Similarity=0.035  Sum_probs=191.6

Q ss_pred             ccCCceEEEEECCCCCEE-EEEeCCCeEEEEEec--CCccCCCcccchhhhhhcccccccCCCccceeeeec--cCCccc
Q 012721           30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEF  104 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l-atg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~  104 (457)
                      .|.+.|++++|+|++++| |+|+.||.|+||++.  +++.                           +..+.  .|.   
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------------~~~~~~~~~~---  149 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------------LKLRKRFCFS---  149 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------------EEEEEEEECS---
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------------eeeeecccCC---
Confidence            467789999999999996 899999999999998  5542                           23443  444   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                               ..|.+++|  ++++.+|++++.|+.|++|++.++.....                                
T Consensus       150 ---------~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~--------------------------------  186 (450)
T 2vdu_B          150 ---------KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKF--------------------------------  186 (450)
T ss_dssp             ---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSC--------------------------------
T ss_pred             ---------CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCcccccc--------------------------------
Confidence                     78999999  78999999999999999999887643210                                


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC---CCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                                              +...+ .+|...|.+++|+|+   +++|++| .|+.|++||++ .+.....+    
T Consensus       187 ------------------------~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~----  236 (450)
T 2vdu_B          187 ------------------------TQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP-QCFIVDKW----  236 (450)
T ss_dssp             ------------------------CCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES-CTTCEEEE----
T ss_pred             ------------------------cceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC-CCceeeee----
Confidence                                    01111 578899999999999   9999999 99999999998 45444332    


Q ss_pred             CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccccc----------ccCc--ccceecccc
Q 012721          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE----------SHGS--KSFFTEIIA  328 (457)
Q Consensus       261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~h~~  328 (457)
                        +.+|...|.+++|+ ++ .+|++++.|+.|++||+++++..    ..+..+..          .+..  .........
T Consensus       237 --~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (450)
T 2vdu_B          237 --LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF  308 (450)
T ss_dssp             --CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred             --ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccccccccccccceE
Confidence              46799999999999 88 99999999999999999988654    22221000          0000  000012345


Q ss_pred             ceEEEEEccCCCeEEEEe--cCcEEEEec--cCCC---CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721          329 SISDIKFANDGQHLLSRD--YMNLKLWDI--RMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (457)
Q Consensus       329 ~v~~~~~s~~g~~l~s~~--~~~i~~wd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  401 (457)
                      .|.+++|+|++++|++++  ++.|++|++  .. +   +.+..+..+ ..+               .+++|+|++.++++
T Consensus       309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~v---------------~~~~~~~~~~~v~~  371 (450)
T 2vdu_B          309 AVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP-YNV---------------ISLSAHNDEFQVTL  371 (450)
T ss_dssp             CEEEEEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS-SCE---------------EEEEEETTEEEEEE
T ss_pred             EEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC-Cce---------------EEEEecCCcEEEEE
Confidence            799999999999999876  499999999  43 4   455566666 322               68999996554544


Q ss_pred             EeC------CCcEEEEecCCC
Q 012721          402 GSY------SNLLRIFSHGVG  416 (457)
Q Consensus       402 ~~~------dg~i~iw~~~~~  416 (457)
                      ++.      +..|.+|.+...
T Consensus       372 ~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          372 DNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             CCTTCCSSCCCSEEEEEEETT
T ss_pred             ecccCCCCCCcceEEEEEEcC
Confidence            443      556899987644

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=2.1e-28  Score=233.68  Aligned_cols=265  Identities=13%  Similarity=0.149  Sum_probs=183.5

Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                      +.+.|.+++|  ++++++|++|+.||.|++|++.+++.......                                    
T Consensus        27 ~~~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~------------------------------------   68 (447)
T 3dw8_B           27 EADIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSR------------------------------------   68 (447)
T ss_dssp             GGGSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCC------------------------------------
T ss_pred             ccCcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccc------------------------------------
Confidence            3488999999  78999999999999999999987652110000                                    


Q ss_pred             cccceEEEeccCccccccceeeccCCC------------CCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeee
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHD------------FNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIV  256 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~  256 (457)
                                   ...++...+ .+|.            ..|.+++|+|++  ..|+++ .|+.|++||+.........+
T Consensus        69 -------------~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~  134 (447)
T 3dw8_B           69 -------------GEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGY  134 (447)
T ss_dssp             -------------CCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred             -------------cceeEeccc-ccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCccee
Confidence                         000111122 4666            789999999998  788888 99999999997322110000


Q ss_pred             ecCC--------------------------------CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeec
Q 012721          257 DMKP--------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD  304 (457)
Q Consensus       257 ~~~~--------------------------------~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~  304 (457)
                      ....                                ....+|...|.+++|+|++ ++|++| .|+.|++||++......
T Consensus       135 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~  212 (447)
T 3dw8_B          135 NLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSF  212 (447)
T ss_dssp             SCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEE
T ss_pred             cccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCcee
Confidence            0000                                0136799999999999999 999998 79999999998543221


Q ss_pred             cccccccccccccCcccceeccccceEEEEEccCC-CeEEEEec-CcEEEEeccCCCCc----eeEeeeccccccccccc
Q 012721          305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIRMDSTP----VATFKIHEHLRPKLCDL  378 (457)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~-~~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~  378 (457)
                         ..+..      ....+.+|...|.+++|+|++ ++|++++. +.|++||++. ++.    +..+..|........  
T Consensus       213 ---~~~~~------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~--  280 (447)
T 3dw8_B          213 ---NIVDI------KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEEPEDPSNRSF--  280 (447)
T ss_dssp             ---EEEEC------CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECCC-----CCH--
T ss_pred             ---eeeec------ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEeccCCCcccccc--
Confidence               11111      011346788899999999998 89998875 9999999986 554    677777764100000  


Q ss_pred             cCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcce---------------eeeeccCCccee
Q 012721          379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR---------------KPILQAAPRARR  443 (457)
Q Consensus       379 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~---------------~~~~~p~~~~~~  443 (457)
                       .......+.+++|+|++++|++++. +.|++||+.+.......+.+|...+.               .++|+|++...+
T Consensus       281 -~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~  358 (447)
T 3dw8_B          281 -FSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVM  358 (447)
T ss_dssp             -HHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEE
T ss_pred             -ccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEE
Confidence             0000001269999999999999999 99999999984477888888865333               389999998776


Q ss_pred             c
Q 012721          444 S  444 (457)
Q Consensus       444 ~  444 (457)
                      +
T Consensus       359 s  359 (447)
T 3dw8_B          359 T  359 (447)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=5.3e-27  Score=219.87  Aligned_cols=288  Identities=10%  Similarity=0.085  Sum_probs=213.0

Q ss_pred             CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEe
Q 012721           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (457)
Q Consensus        44 ~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~  123 (457)
                      +.++++++.|+.|++||+.+++                           .+..+.+|.             .+.+++|  
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~---------------------------~~~~~~~~~-------------~~~~~~~--   39 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNK---------------------------VTATIPVGS-------------NPMGAVI--   39 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTE---------------------------EEEEEECSS-------------SEEEEEE--
T ss_pred             CEEEEEcCCCCEEEEEECCCCe---------------------------EEEEeecCC-------------CcceEEE--
Confidence            3467889999999999998765                           334555554             4899999  


Q ss_pred             cCCCCEE-EEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEecc
Q 012721          124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG  202 (457)
Q Consensus       124 s~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  202 (457)
                      ++++.++ ++++.|+.|++||+.+++....+....  .+.+++|.+....++....             .++.+++||..
T Consensus        40 s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~-------------~~~~v~v~d~~  104 (391)
T 1l0q_A           40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNM-------------ASSTLSVIDTT  104 (391)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEET-------------TTTEEEEEETT
T ss_pred             CCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEEC-------------CCCEEEEEECC
Confidence            7899876 567799999999999988776655433  6777777765443433221             13579999987


Q ss_pred             CccccccceeeccCCCCCeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc
Q 012721          203 NSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (457)
Q Consensus       203 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~  280 (457)
                      ..   +.+..+  .+...+.+++|+|+++.+ +++ .|+.|++||+. .++....+       ..+ ..+.+++|+|++ 
T Consensus       105 ~~---~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~-------~~~-~~~~~~~~~~dg-  169 (391)
T 1l0q_A          105 SN---TVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTV-------SVG-RSPKGIAVTPDG-  169 (391)
T ss_dssp             TT---EEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------ECC-SSEEEEEECTTS-
T ss_pred             CC---eEEEEE--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEE-------ecC-CCcceEEECCCC-
Confidence            54   333333  234578999999999977 567 89999999998 55555442       323 456899999999 


Q ss_pred             cEE-EEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe----cCcEEEEec
Q 012721          281 NLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDI  355 (457)
Q Consensus       281 ~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~~~i~~wd~  355 (457)
                      +.| ++++.++.|++||+++++..    ..+.              +...+.+++|+|++++|++++    ++.|++||+
T Consensus       170 ~~l~~~~~~~~~v~~~d~~~~~~~----~~~~--------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          170 TKVYVANFDSMSISVIDTVTNSVI----DTVK--------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEE----EEEE--------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEE----EEEe--------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence            655 77889999999999987543    2222              235688999999999988764    499999999


Q ss_pred             cCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEE-EEEeCCCcEEEEecCCCCceeeEEecCCCcce---
Q 012721          356 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSAGGITVEAGKNENR---  431 (457)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~---  431 (457)
                      +. ++.+..+..+...                .+++|+|++++| ++++.|+.|++||+.++ +....+..+..+..   
T Consensus       232 ~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~~~~~~~~~~  293 (391)
T 1l0q_A          232 GT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAVGKNPYASGQ  293 (391)
T ss_dssp             TT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSSSEECCSS
T ss_pred             CC-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEECCcCCCccce
Confidence            85 6777777766543                589999999987 57788999999999998 67777887776643   


Q ss_pred             eeeeccCC
Q 012721          432 KPILQAAP  439 (457)
Q Consensus       432 ~~~~~p~~  439 (457)
                      .+.+.|++
T Consensus       294 ~~~~~~~~  301 (391)
T 1l0q_A          294 FIGSIPVQ  301 (391)
T ss_dssp             CEEECSSC
T ss_pred             eeeccccc
Confidence            24444443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-28  Score=248.41  Aligned_cols=241  Identities=16%  Similarity=0.173  Sum_probs=190.1

Q ss_pred             eeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccccc
Q 012721           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (457)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (457)
                      ..+.+|.            ++|++++|  ++++++|++|+.||.|++|++.++......                     
T Consensus         3 ~~l~gH~------------~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~~~~~---------------------   47 (753)
T 3jro_A            3 VIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLID---------------------   47 (753)
T ss_dssp             -----CC------------CCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEEEEEE---------------------
T ss_pred             eecccCc------------ceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCCccce---------------------
Confidence            3567888            89999999  789999999999999999999854322211                     


Q ss_pred             ccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcc
Q 012721          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ  251 (457)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~  251 (457)
                                                           .+ .+|...|.+++|+|+  +++|++| .||.|++||+. .+.
T Consensus        48 -------------------------------------~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~-~~~   88 (753)
T 3jro_A           48 -------------------------------------TL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE-NGR   88 (753)
T ss_dssp             -------------------------------------EE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE-TTE
T ss_pred             -------------------------------------ec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC-CCc
Confidence                                                 11 689999999999987  9999999 99999999998 443


Q ss_pred             eeeeeecCCCcccCCCCceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721          252 CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      ....     ..+.+|...|.+++|+|+  + .++++|+.||.|++||++++...    ..           ..+.+|...
T Consensus        89 ~~~~-----~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~----~~-----------~~~~~~~~~  147 (753)
T 3jro_A           89 WSQI-----AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT----SP-----------IIIDAHAIG  147 (753)
T ss_dssp             EEEE-----EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCC----CC-----------EEEECCSSC
T ss_pred             cccc-----ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCc----ce-----------eEeecCCCc
Confidence            2111     125779999999999999  7 99999999999999999886321    11           123567789


Q ss_pred             eEEEEEcc-------------CCCeEEEEec-CcEEEEeccCCC---CceeEeeeccccccccccccCCCCccccceEEE
Q 012721          330 ISDIKFAN-------------DGQHLLSRDY-MNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  392 (457)
Q Consensus       330 v~~~~~s~-------------~g~~l~s~~~-~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  392 (457)
                      |.+++|+|             ++.+|++|+. |.|++||++...   .....+.+|...+               ++++|
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V---------------~~l~~  212 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVAW  212 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEEE
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE---------------EEEEe
Confidence            99999999             5889998875 999999998632   3445666777654               79999


Q ss_pred             cCC---CcEEEEEeCCCcEEEEecCCCCc----eeeEEecCCCcceeeeeccCCcceecc
Q 012721          393 SGD---GLHFATGSYSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       393 s~d---~~~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      +|+   +.+|++++.||.|++||+.++..    .......|...+.+++|+|++....+|
T Consensus       213 sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  272 (753)
T 3jro_A          213 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (753)
T ss_dssp             CCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred             ccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence            999   99999999999999999998731    334446689999999999999877763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=4.1e-27  Score=223.73  Aligned_cols=270  Identities=8%  Similarity=0.017  Sum_probs=206.8

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      ....+.+++|+|++.++++++.++.|++||+.+++..                      .......+.+|.         
T Consensus       121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~----------------------~~~~~~~~~~~~---------  169 (433)
T 3bws_A          121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV----------------------RLSPPEKYKKKL---------  169 (433)
T ss_dssp             CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE----------------------EECCCHHHHTTC---------
T ss_pred             CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe----------------------eecCcccccccC---------
Confidence            4556779999998888888889999999999877642                      000011345666         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         +.|.+++|  ++++.++++++.|+.|++||+.+++.....                                     
T Consensus       170 ---~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~-------------------------------------  207 (433)
T 3bws_A          170 ---GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATV-------------------------------------  207 (433)
T ss_dssp             ---CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEE-------------------------------------
T ss_pred             ---CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEE-------------------------------------
Confidence               78999999  688999999999999999999887654332                                     


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                              ..|...+.+++|+|+++.++ ++ .|+.|++||++ .++....       +. +..
T Consensus       208 ------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~~~~-------~~-~~~  254 (433)
T 3bws_A          208 ------------------------DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK-TKLEIRK-------TD-KIG  254 (433)
T ss_dssp             ------------------------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEE-------CC-CCS
T ss_pred             ------------------------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC-CCcEEEE-------ec-CCC
Confidence                                    35677899999999999885 56 79999999998 5555543       22 234


Q ss_pred             ceEEEEEecCCccEEEEEc--------cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          269 VITSAEFHPIYCNLLAYSS--------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~--------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                      .+.+++|+|++ +.|++++        .||.|++||+++++..    ...              .|...+.+++|+|+++
T Consensus       255 ~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~--------------~~~~~~~~~~~~~~g~  315 (433)
T 3bws_A          255 LPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLI----DTI--------------GPPGNKRHIVSGNTEN  315 (433)
T ss_dssp             EEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EEE--------------EEEECEEEEEECSSTT
T ss_pred             CceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEE----eec--------------cCCCCcceEEECCCCC
Confidence            58999999999 8888887        4889999999987543    111              2235788999999998


Q ss_pred             eEE-EEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC--------------
Q 012721          341 HLL-SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY--------------  404 (457)
Q Consensus       341 ~l~-s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~--------------  404 (457)
                      +++ +++ ++.|++||+.. ++.+..+.. ...+               .+++|+|++++|++++.              
T Consensus       316 ~l~~~~~~~~~v~v~d~~~-~~~~~~~~~-~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~  378 (433)
T 3bws_A          316 KIYVSDMCCSKIEVYDLKE-KKVQKSIPV-FDKP---------------NTIALSPDGKYLYVSCRGPNHPTEGYLKKGL  378 (433)
T ss_dssp             EEEEEETTTTEEEEEETTT-TEEEEEEEC-SSSE---------------EEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred             EEEEEecCCCEEEEEECCC-CcEEEEecC-CCCC---------------CeEEEcCCCCEEEEEecCCCccccccccccc
Confidence            665 444 49999999985 666666653 2222               58999999999988876              


Q ss_pred             -CCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          405 -SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       405 -dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                       ||.|++||+.++ +....+.. ...+..++|+|++.....
T Consensus       379 ~dg~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~  417 (433)
T 3bws_A          379 VLGKVYVIDTTTD-TVKEFWEA-GNQPTGLDVSPDNRYLVI  417 (433)
T ss_dssp             SCCEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred             cceEEEEEECCCC-cEEEEecC-CCCCceEEEcCCCCEEEE
Confidence             579999999998 55666665 457899999999987654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.1e-27  Score=215.91  Aligned_cols=246  Identities=11%  Similarity=0.029  Sum_probs=174.9

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee-ccCCccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKSL  110 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~  110 (457)
                      ...|.++.|+|+   +++|+.|++|++|+.......       ..+           ...+.+..+ .+|.         
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~-------~~~-----------~~~~~~~~~~~~~~---------  125 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI-------LDS-----------KTNKVLREIEVDSA---------  125 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE-------EET-----------TTCCEEEEEECCCS---------
T ss_pred             cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE-------eec-----------CCcceeEEeecCCC---------
Confidence            357788888887   999999999999987643210       000           011112222 2444         


Q ss_pred             cccCcEEEEEEEecC--CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          111 EIEEKINRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~--~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                         +.|.+++|  +|  ++++|++++.|++|++||+.+++......                                  
T Consensus       126 ---~~v~~~~~--~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~----------------------------------  166 (343)
T 3lrv_A          126 ---NEIIYMYG--HNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS----------------------------------  166 (343)
T ss_dssp             ---SCEEEEEC--CC---CCEEEEEETTCCEEEEESSSSCEEEEEC----------------------------------
T ss_pred             ---CCEEEEEc--CCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe----------------------------------
Confidence               78999999  67  89999999999999999999886643221                                  


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCccee-eeeecCCCcccC-
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDD-  265 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~-  265 (457)
                                                ..|...|.+++|+|++.+|++| .|+.|++||++. +... ..       +.. 
T Consensus       167 --------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~-~~~~~~~-------~~~~  212 (343)
T 3lrv_A          167 --------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS-PDQASSR-------FPVD  212 (343)
T ss_dssp             --------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-TTSCCEE-------CCCC
T ss_pred             --------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CCCCccE-------Eecc
Confidence                                      3455679999999999999999 999999999994 4433 33       455 


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccce--EEEEEccCCCeEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI--SDIKFANDGQHLL  343 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~s~~g~~l~  343 (457)
                      |...|++++|+|++ .+|++++ |+.|++||+++.+..    ..+..          +..|...+  .+++|+|+|++|+
T Consensus       213 h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          213 EEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGT----LAYPT----------YTIPEFKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             TTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTC----BSSCC----------CBC-----CCEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcc----eeecc----------cccccccccceEEEECCCCCEEE
Confidence            99999999999999 9999999 559999999987532    11111          11122233  4799999999999


Q ss_pred             EEe--cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC---CCcEEEEEeCCCcEEEEecCCC
Q 012721          344 SRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       344 s~~--~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      +++  ++.|++|++....+....     ..+               ..+.|++   +...|++++.|+.+.++-....
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~~~~-----~~~---------------~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  334 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKNWTK-----DEE---------------SALCLQSDTADFTDMDVVCGDGGIAAILKTND  334 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCSEEE-----EEE---------------EECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred             EecCCCCcEEEEEEcccccceEe-----cCc---------------eeEecCccccccceeEEEecCCceEEEEecCC
Confidence            854  699999999653332222     111               4678888   8899999999999998865433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=4.1e-26  Score=216.98  Aligned_cols=257  Identities=12%  Similarity=0.192  Sum_probs=198.1

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|.++.+    +++++++|+.||.|++||+.+++.......+ ...|.+++|   ++..+.++             ..+
T Consensus       134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~---~~~~l~sg-------------~~d  192 (435)
T 1p22_A          134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQY---DERVIITG-------------SSD  192 (435)
T ss_dssp             CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEECCC-SSCEEEEEC---CSSEEEEE-------------ETT
T ss_pred             CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC-CCcEEEEEE---CCCEEEEE-------------cCC
Confidence            67888876    6789999999999999999998876665432 344666666   22222211             135


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                      +.+++||++..   +++..+ .+|...|.+++|++  ..+++| .|+.|++||++. +......    ..+.+|...|.+
T Consensus       193 g~i~vwd~~~~---~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~-~~~~~~~----~~~~~~~~~v~~  261 (435)
T 1p22_A          193 STVRVWDVNTG---EMLNTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMAS-PTDITLR----RVLVGHRAAVNV  261 (435)
T ss_dssp             SCEEEEESSSC---CEEEEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSS-SSCCEEE----EEECCCSSCEEE
T ss_pred             CeEEEEECCCC---cEEEEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCC-CCCceee----eEecCCCCcEEE
Confidence            68999999753   455555 78999999999974  588888 999999999984 3333111    125789999999


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEE
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  351 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~  351 (457)
                      ++|  ++ ++|++|+.||.|++||+++++..    ..             +.+|...|.++.|+  ++++++|+. +.|+
T Consensus       262 ~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~----~~-------------~~~~~~~v~~~~~~--~~~l~~g~~dg~i~  319 (435)
T 1p22_A          262 VDF--DD-KYIVSASGDRTIKVWNTSTCEFV----RT-------------LNGHKRGIACLQYR--DRLVVSGSSDNTIR  319 (435)
T ss_dssp             EEE--ET-TEEEEEETTSEEEEEETTTCCEE----EE-------------EECCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             EEe--CC-CEEEEEeCCCeEEEEECCcCcEE----EE-------------EcCCCCcEEEEEeC--CCEEEEEeCCCeEE
Confidence            999  55 89999999999999999987533    22             34567889999984  678888874 9999


Q ss_pred             EEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc--------eeeEE
Q 012721          352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--------GGITV  423 (457)
Q Consensus       352 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~--------~~~~~  423 (457)
                      +||+++ ++.+..+.+|...+               .+++|  ++.+|++|+.||.|++||+.++..        ....+
T Consensus       320 iwd~~~-~~~~~~~~~h~~~v---------------~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  381 (435)
T 1p22_A          320 LWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL  381 (435)
T ss_dssp             EEETTT-CCEEEEECCCSSCE---------------EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred             EEECCC-CCEEEEEeCCcCcE---------------EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec
Confidence            999986 78888998888765               57777  889999999999999999977631        67788


Q ss_pred             ecCCCcceeeeeccCCcceec
Q 012721          424 EAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       424 ~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      .+|.++|.+++|  ++....+
T Consensus       382 ~~h~~~v~~l~~--~~~~l~s  400 (435)
T 1p22_A          382 VEHSGRVFRLQF--DEFQIVS  400 (435)
T ss_dssp             CCCSSCCCCEEE--CSSCEEE
T ss_pred             cCCCCCeEEEEe--CCCEEEE
Confidence            999999999999  4444444

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=6.5e-26  Score=209.28  Aligned_cols=276  Identities=12%  Similarity=0.058  Sum_probs=182.2

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|.+++|  +++|++|++|+.|+ +++|++..++........   .+..+.+......+....             ..+
T Consensus        20 ~~V~~v~f--s~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------------~~d   80 (355)
T 3vu4_A           20 NPVTDYEF--NQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR---HLSKVRMLHRTNYVAFVT-------------GVK   80 (355)
T ss_dssp             CCCCEEEE--CTTSSEEEEECSSE-EEEEEETTEEEEEEEECS---CCCEEEECTTSSEEEEEC-------------SST
T ss_pred             CceEEEEE--CCCCCEEEEEcCCE-EEEEecCCcceeeeeecC---CeEEEEEcCCCCEEEEEE-------------CCc
Confidence            88999999  79999999888775 789999887655443322   233344333222111110             013


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v  273 (457)
                      +.+++||..+.   +++..+  .+...|.+++++++  .++++.|+.|++||+....+.+..       +..   ....+
T Consensus        81 ~~v~iWd~~~~---~~~~~~--~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~-------~~~---~~~~~  143 (355)
T 3vu4_A           81 EVVHIWDDVKK---QDVSRI--KVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITD-------DIR---FGGVC  143 (355)
T ss_dssp             TEEEEEETTTT---EEEEEE--ECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSC-------CEE---EEEEE
T ss_pred             cEEEEEECCCC---cEEEEE--ECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEE-------ecc---CCceE
Confidence            48999998653   344444  36679999999875  455567889999999843244332       222   34455


Q ss_pred             EEecCCccEEEE--EccCCeEEEEEccCCeeeccccccccccccccCc-ccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721          274 EFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (457)
Q Consensus       274 ~~~p~~~~~l~~--~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~  349 (457)
                      ++++   .++++  |+.||.|++||+++++...........  ....+ ...+.+|...|++++|+|+|++|++++. ++
T Consensus       144 ~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~--~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~  218 (355)
T 3vu4_A          144 EFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ--KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT  218 (355)
T ss_dssp             EEET---TEEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred             EEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccc--cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence            6676   34444  689999999999876421000000000  00011 3446789999999999999999999875 98


Q ss_pred             -EEEEeccCCCCceeEee-e-ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee-eEEe-
Q 012721          350 -LKLWDIRMDSTPVATFK-I-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVE-  424 (457)
Q Consensus       350 -i~~wd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~-  424 (457)
                       |++||+++ ++.+..+. + |...+               .+++|+||+++|++++.|++|++||+..+.... ..+. 
T Consensus       219 ~v~iwd~~~-~~~~~~~~~g~h~~~v---------------~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~  282 (355)
T 3vu4_A          219 IIRVFKTED-GVLVREFRRGLDRADV---------------VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG  282 (355)
T ss_dssp             EEEEEETTT-CCEEEEEECTTCCSCE---------------EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT
T ss_pred             EEEEEECCC-CcEEEEEEcCCCCCcE---------------EEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc
Confidence             99999986 78888887 4 76654               699999999999999999999999998663211 1111 


Q ss_pred             --------------------cCCCcceeeeeccCCcceeccc
Q 012721          425 --------------------AGKNENRKPILQAAPRARRSSL  446 (457)
Q Consensus       425 --------------------~~~~~v~~~~~~p~~~~~~~~~  446 (457)
                                          .+..+...++|+|++.....+-
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~  324 (355)
T 3vu4_A          283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP  324 (355)
T ss_dssp             TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEET
T ss_pred             eeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEe
Confidence                                1122346788999987777643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=7.3e-26  Score=215.12  Aligned_cols=239  Identities=9%  Similarity=0.099  Sum_probs=187.6

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|.+++|++++.++++++.|+.|++||+++++                           .+..+..|.        
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~---------------------------~~~~~~~~~--------  211 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA---------------------------YKATVDLTG--------  211 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC---------------------------EEEEEECSS--------
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce---------------------------EEEEEcCCC--------
Confidence            578899999999999999999999999999998765                           345566776        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          110 LEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                          ..+.+++|  ++++..+++ ++.|+.|++||+.+++.....                                   
T Consensus       212 ----~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-----------------------------------  250 (433)
T 3bws_A          212 ----KWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRKT-----------------------------------  250 (433)
T ss_dssp             ----SSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEEC-----------------------------------
T ss_pred             ----CCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEEe-----------------------------------
Confidence                77999999  678887755 558999999999887654321                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C--------CCeEEEEEcCCCcceeeeeecC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--------DLRINLWNLEISDQCFNIVDMK  259 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--------d~~i~iwd~~~~~~~~~~~~~~  259 (457)
                                                 .+...+.+++|+|+++.++++ .        |+.|++||+. .++....+   
T Consensus       251 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~~---  299 (433)
T 3bws_A          251 ---------------------------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLIDTI---  299 (433)
T ss_dssp             ---------------------------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEEEE---
T ss_pred             ---------------------------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEEeec---
Confidence                                       123358899999999998886 3        7899999998 45544432   


Q ss_pred             CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g  339 (457)
                           .|...+.+++|+|++..++++++.|+.|++||+.+++..    ..+.              +...+.+++|+|+|
T Consensus       300 -----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~--------------~~~~~~~~~~s~dg  356 (433)
T 3bws_A          300 -----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIP--------------VFDKPNTIALSPDG  356 (433)
T ss_dssp             -----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEE--------------CSSSEEEEEECTTS
T ss_pred             -----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEec--------------CCCCCCeEEEcCCC
Confidence                 344578899999999446677799999999999987543    2221              24578999999999


Q ss_pred             CeEEEEec----------------CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721          340 QHLLSRDY----------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       340 ~~l~s~~~----------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                      ++|++++.                |.|++||+.+ ++.+..+..+...                ..++|+||+++|++++
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~  419 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQP----------------TGLDVSPDNRYLVISD  419 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEECSSSE----------------EEEEECTTSCEEEEEE
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCC-CcEEEEecCCCCC----------------ceEEEcCCCCEEEEEE
Confidence            98887653                4899999975 7777777654332                5899999999999887


Q ss_pred             C-CCcEEEEecCC
Q 012721          404 Y-SNLLRIFSHGV  415 (457)
Q Consensus       404 ~-dg~i~iw~~~~  415 (457)
                      . |+.|++|+++.
T Consensus       420 ~~d~~i~v~~~~~  432 (433)
T 3bws_A          420 FLDHQIRVYRRDG  432 (433)
T ss_dssp             TTTTEEEEEEETT
T ss_pred             CCCCeEEEEEecC
Confidence            5 99999999863

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.6e-24  Score=204.13  Aligned_cols=244  Identities=14%  Similarity=0.117  Sum_probs=185.2

Q ss_pred             CCEEEEEeCC------CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEE
Q 012721           44 GDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (457)
Q Consensus        44 ~~~latg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~  117 (457)
                      +..++.++.+      +.|++||+++...                            ..+.+|.            ..|.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~----------------------------~~l~~~~------------~~v~  182 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ----------------------------FVVHRSP------------QPLM  182 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSC----------------------------EEEEEES------------SCEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCC----------------------------EEEeCCC------------Ccce
Confidence            5566666554      7999999875432                            3566677            7899


Q ss_pred             EEEEEecCCCCEEEEeeCCC---eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          118 RVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       118 ~v~~~~s~~~~~l~s~s~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      +++|  +|+|+.|++++.|+   .|++||+.+++...+                                          
T Consensus       183 ~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l------------------------------------------  218 (415)
T 2hqs_A          183 SPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQV------------------------------------------  218 (415)
T ss_dssp             EEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE------------------------------------------
T ss_pred             eeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEEe------------------------------------------
Confidence            9999  79999999999875   999999998765432                                          


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCC--eEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                          ..|...+.+++|+|||+.|+ ++ .++  .|++||+. .++...        +..|...+
T Consensus       219 --------------------~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~-~~~~~~--------l~~~~~~~  269 (415)
T 2hqs_A          219 --------------------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQ--------VTDGRSNN  269 (415)
T ss_dssp             --------------------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEEE--------CCCCSSCE
T ss_pred             --------------------ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC-CCCEEe--------CcCCCCcc
Confidence                                34566899999999999888 55 544  59999998 444432        45677889


Q ss_pred             EEEEEecCCccEEEEEcc-CC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721          271 TSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-  346 (457)
                      .+++|+|+| +.|++++. ++  .|.+||+.+++..     .+             ..|...+.+++|+|+|++|++++ 
T Consensus       270 ~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-----~l-------------~~~~~~~~~~~~spdG~~l~~~~~  330 (415)
T 2hqs_A          270 TEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-----RI-------------TWEGSQNQDADVSSDGKFMVMVSS  330 (415)
T ss_dssp             EEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-----EC-------------CCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             cceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-----EE-------------ecCCCcccCeEECCCCCEEEEEEC
Confidence            999999999 87877775 45  6777888876421     11             12235688999999999999764 


Q ss_pred             c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC---cEEEEecCCCCcee
Q 012721          347 Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGG  420 (457)
Q Consensus       347 ~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~iw~~~~~~~~~  420 (457)
                      +   ..|++||+.. ++. ..+..+. .+               .+++|+|||++|++++.++   .|++||+..+  ..
T Consensus       331 ~~g~~~i~~~d~~~-~~~-~~l~~~~-~~---------------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~  390 (415)
T 2hqs_A          331 NGGQQHIAKQDLAT-GGV-QVLSSTF-LD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FK  390 (415)
T ss_dssp             CSSCEEEEEEETTT-CCE-EECCCSS-SC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CE
T ss_pred             cCCceEEEEEECCC-CCE-EEecCCC-Cc---------------CCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cE
Confidence            2   5899999975 443 3444443 22               5899999999999988877   7999999744  56


Q ss_pred             eEEecCCCcceeeeeccCC
Q 012721          421 ITVEAGKNENRKPILQAAP  439 (457)
Q Consensus       421 ~~~~~~~~~v~~~~~~p~~  439 (457)
                      ..+.+|.+.|.+++|+|.-
T Consensus       391 ~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          391 ARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             EECCCSSSEEEEEEECCCC
T ss_pred             EEeeCCCCCCcCCcccccc
Confidence            7789999999999999974

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=5e-25  Score=194.76  Aligned_cols=278  Identities=10%  Similarity=0.050  Sum_probs=171.4

Q ss_pred             EEEEEEEecCCCC---EEEEeeCCCeEEEEEeccc-ceeEEEeecCCC-ceeeeeeccccccccccCCCC-CceeccCCc
Q 012721          116 INRVRWCAAPNGS---MFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFP-FVSSENTLLAEKNFMNEHNPP-SFAHGYHLE  189 (457)
Q Consensus       116 V~~v~~~~s~~~~---~l~s~s~d~~i~vw~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  189 (457)
                      +.++.|  ...+.   .++++++ ..|++|+..++ +........+.. .|..+.+.+..-.+++..... ....+....
T Consensus        42 ~~~~~~--~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla  118 (356)
T 2w18_A           42 VSAMFW--ERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF  118 (356)
T ss_dssp             EEEEEE--C----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred             Eeeeee--ccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence            455666  23332   4556665 67999999987 223444444443 477777776655555433211 000000000


Q ss_pred             cccc-cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          190 WTEN-MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       190 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                      +.++ .....+..            ..+|...|..+   ++++++.++   .|+.|++|++...++....       +..
T Consensus       119 ~spd~~~~~~~l~------------s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s-------~~~  176 (356)
T 2w18_A          119 CSSDDESEKQVLL------------KSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN-------QFL  176 (356)
T ss_dssp             C------CCEEEE------------EEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEE-------EEE
T ss_pred             ECCCccccccEEE------------eCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeee-------ecc
Confidence            1111 00000000            02333334333   456666663   4999999999645655543       456


Q ss_pred             CCCceEEEEEec---CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721          266 LTEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (457)
Q Consensus       266 ~~~~i~~v~~~p---~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l  342 (457)
                      |...+..++|+|   ++ .+|++++.|++|+|||+++++..    +.+..|.          .+...+.+++|+|+|+++
T Consensus       177 ~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~l----~tL~g~~----------~~v~~v~~vafSpdG~~l  241 (356)
T 2w18_A          177 MPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQLL----KKMHIDD----------SYQASVCHKAYSEMGLLF  241 (356)
T ss_dssp             CCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCEE----EEEECCC-------------CCCEEEEEEETTEEE
T ss_pred             CCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcEE----EEEcCCC----------cceeeeEEEEECCCCCEE
Confidence            888888888888   66 89999999999999999998755    4443310          112468888999999987


Q ss_pred             E------------EEe-cCcEEEEeccCCCCceeEee-----eccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721          343 L------------SRD-YMNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (457)
Q Consensus       343 ~------------s~~-~~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  404 (457)
                      +            +|+ |++|++||..+ ++.+..+.     +|...                 .+..+.++.++++++.
T Consensus       242 vs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~-----------------~lsg~~sg~~lASgS~  303 (356)
T 2w18_A          242 IVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGR-----------------FLEGDVKDHCAAAILT  303 (356)
T ss_dssp             EEEC------------CCEEEEEEETTT-TEEEEEEEECCCTTCCCC-----------------EEEEEEETTEEEEEET
T ss_pred             EEeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeeccCCCcce-----------------eEccccCCCEEEEEcC
Confidence            4            454 38999999975 66665542     33221                 1233334789999999


Q ss_pred             CCcEEEEecCCCCceeeEEecCCCcce-eeeeccCCcceeccccccccccc
Q 012721          405 SNLLRIFSHGVGSAGGITVEAGKNENR-KPILQAAPRARRSSLSNLTRGLY  454 (457)
Q Consensus       405 dg~i~iw~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~~~~~~~~~~~~~  454 (457)
                      |++|+|||+.++ +...++.+|...+. .++|+|+++..++  ++.++..|
T Consensus       304 DgTIkIWDl~tG-k~l~tL~gH~~~vvs~vafSPDG~~LaS--GS~D~TIk  351 (356)
T 2w18_A          304 SGTIAIWDLLLG-QCTALLPPVSDQHWSFVKWSGTDSHLLA--GQKDGNIF  351 (356)
T ss_dssp             TSCEEEEETTTC-SEEEEECCC--CCCCEEEECSSSSEEEE--ECTTSCEE
T ss_pred             CCcEEEEECCCC-cEEEEecCCCCCeEEEEEECCCCCEEEE--EECCCcEE
Confidence            999999999999 78889999988765 5899999998888  56665554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=2.6e-23  Score=201.81  Aligned_cols=303  Identities=12%  Similarity=0.055  Sum_probs=207.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEe--cCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           34 IVSAIEFDKTGDYLAVGDRGGRVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      .+.+++|+|||++|++++.|++|++||+  .+++                           .+.++..+           
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~---------------------------~~~~i~~g-----------  221 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT---------------------------KVAEIKIG-----------  221 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE---------------------------EEEEEECC-----------
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc---------------------------EEEEEecC-----------
Confidence            3889999999999999999999999999  5443                           33444432           


Q ss_pred             ccCcEEEEEEEecC----CCCEEEEee-CCCeEEEEEecccceeEEEeecC----------CCceeeeeecccccccccc
Q 012721          112 IEEKINRVRWCAAP----NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDH----------FPFVSSENTLLAEKNFMNE  176 (457)
Q Consensus       112 ~~~~V~~v~~~~s~----~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  176 (457)
                        ..+..++|  +|    +|+++++++ .+++|.+||..+++....+....          ...+..+.+++..+.++..
T Consensus       222 --~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs  297 (543)
T 1nir_A          222 --IEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  297 (543)
T ss_dssp             --SEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             --CCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence              45789999  78    999999887 58999999999988777665321          1133444444333222211


Q ss_pred             CCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceee
Q 012721          177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN  254 (457)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~  254 (457)
                      .             ..++.+.+||........ +..  ..+...+..+.|+|++++|+++  .++.|.+||.. .++...
T Consensus       298 ~-------------~~~g~i~vvd~~~~~~l~-~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~-tg~l~~  360 (543)
T 1nir_A          298 V-------------KETGKVLLVNYKDIDNLT-VTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK-DRRLSA  360 (543)
T ss_dssp             E-------------TTTTEEEEEECTTSSSCE-EEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEE
T ss_pred             E-------------CCCCeEEEEEecCCCcce-eEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECC-CCeEEE
Confidence            1             124578888886532211 111  2356678899999999987654  78999999999 566666


Q ss_pred             eeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEE
Q 012721          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (457)
Q Consensus       255 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  333 (457)
                      .+...   ...|.+....+ ++|++..+++++. .|++|.+||+.+.+....          .......+..|...+..+
T Consensus       361 ~i~~g---~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~----------~~~~v~~l~~~g~~~~~v  426 (543)
T 1nir_A          361 LVDVG---KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY----------AWKKVAELQGQGGGSLFI  426 (543)
T ss_dssp             EEECS---SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT----------BTSEEEEEECSCSCCCCE
T ss_pred             eeccC---CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh----------cCeEEEEEEcCCCCceEE
Confidence            65432   12355443333 5787437778776 689999999987311000          001122345566778899


Q ss_pred             EEccCCCeEEEEe--------cCcEEEEeccCCCCce-eEee--------eccccccccccccCCCCccccceEEEcCCC
Q 012721          334 KFANDGQHLLSRD--------YMNLKLWDIRMDSTPV-ATFK--------IHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (457)
Q Consensus       334 ~~s~~g~~l~s~~--------~~~i~~wd~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~  396 (457)
                      +++|+|++|++++        +++|.+||+.+ .+.. ..+.        .+...               +..+.|+|||
T Consensus       427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~v~~~~~~~~~~~~---------------~~~~~~~~~g  490 (543)
T 1nir_A          427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWADLGEGAKR---------------VVQPEYNKRG  490 (543)
T ss_dssp             ECCTTCCEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHCCCSSCCE---------------EEEEEECSSS
T ss_pred             EcCCCCCcEEEecCCCCCcccCceEEEEECCC-CCCCeEEeechhhcccCCCCCc---------------eEeccCCCCC
Confidence            9999999999976        47999999986 4444 4432        11221               2689999999


Q ss_pred             cEEEEEe-----CCCcEEEEecCCCCceeeEEecC
Q 012721          397 LHFATGS-----YSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       397 ~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      +.|+++.     .|+.|.|||.+++ ++..+++..
T Consensus       491 ~~~~~s~~~~~~~~~~i~v~D~~t~-~~~~~i~~~  524 (543)
T 1nir_A          491 DEVWFSVWNGKNDSSALVVVDDKTL-KLKAVVKDP  524 (543)
T ss_dssp             SEEEEEEECCTTSCCEEEEEETTTT-EEEEEECCT
T ss_pred             CEEEEEeecCCCCCCeEEEEECCCc-eEEEeecCC
Confidence            9988763     4799999999999 667777654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=3.8e-23  Score=193.63  Aligned_cols=297  Identities=10%  Similarity=0.088  Sum_probs=200.8

Q ss_pred             cccCCceEEEEECCCCCEE-EEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      +.+...+.+++|+|++++| ++++.|+.|++||+.+++.                           +..+..+       
T Consensus        28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~---------------------------~~~~~~~-------   73 (391)
T 1l0q_A           28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------------------IATVPAG-------   73 (391)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------------EEEEECS-------
T ss_pred             eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE---------------------------EEEEECC-------
Confidence            3345679999999999976 6777899999999987663                           2333333       


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                            ..+.+++|  ++++++++. ++.|+.|++||+.+++.......  ...+.+++|.+....++....        
T Consensus        74 ------~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~--------  135 (391)
T 1l0q_A           74 ------SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNN--------  135 (391)
T ss_dssp             ------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEET--------
T ss_pred             ------CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeC--------
Confidence                  46999999  789887765 45679999999999877665543  344666776654433322111        


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                           .++.+++||....   +.+..+ .. ...+.+++|+|+++.+ +++ .++.|++||++ .++....+        
T Consensus       136 -----~~~~v~~~d~~~~---~~~~~~-~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~--------  196 (391)
T 1l0q_A          136 -----GDKTVSVINTVTK---AVINTV-SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-TNSVIDTV--------  196 (391)
T ss_dssp             -----TTTEEEEEETTTT---EEEEEE-EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE--------
T ss_pred             -----CCCEEEEEECCCC---cEEEEE-ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCeEEEEE--------
Confidence                 2458999998643   333333 23 3467999999999887 566 89999999998 55555442        


Q ss_pred             CCCCceEEEEEecCCccEEEEEc---cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~  341 (457)
                      .+...+.+++|+|++ ++|++++   .++.|++||+++++..    ..+..              ...+.+++|+|++++
T Consensus       197 ~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~  257 (391)
T 1l0q_A          197 KVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPV--------------GPDPAGIAVTPDGKK  257 (391)
T ss_dssp             ECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEE----EEEEC--------------CSSEEEEEECTTSSE
T ss_pred             ecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEE----EEEec--------------CCCccEEEEccCCCE
Confidence            245678999999999 8787777   6899999999987543    22222              135789999999998


Q ss_pred             EE-EEe-cCcEEEEeccCCCCceeEeeecccccccc--ccccCCCCccccceEEEcCC------C--cEEEEEeCCCcEE
Q 012721          342 LL-SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL--CDLYNNDSIFDKFECSVSGD------G--LHFATGSYSNLLR  409 (457)
Q Consensus       342 l~-s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~d------~--~~l~s~~~dg~i~  409 (457)
                      |+ +++ ++.|++||+.+ ++.+..+..+.......  .........+.+......+.      .  ..+...+.|..++
T Consensus       258 l~~s~~~d~~v~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (391)
T 1l0q_A          258 VYVALSFXNTVSVIDTAT-NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEW  336 (391)
T ss_dssp             EEEEETTTTEEEEEETTT-TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEE
T ss_pred             EEEEcCCCCEEEEEECCC-CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEE
Confidence            85 555 49999999986 77777776665432100  00000001111111222211      1  3466667789999


Q ss_pred             EEecCCC
Q 012721          410 IFSHGVG  416 (457)
Q Consensus       410 iw~~~~~  416 (457)
                      +|++.++
T Consensus       337 ~W~~~~g  343 (391)
T 1l0q_A          337 KWDFGDG  343 (391)
T ss_dssp             EEECSSS
T ss_pred             EEECCCC
Confidence            9999887

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=5.1e-25  Score=207.47  Aligned_cols=182  Identities=13%  Similarity=0.065  Sum_probs=136.6

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEe-CCC---eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE-EEccC
Q 012721          215 HAHDFNINSISNNSDCETFVSA-DDL---RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR  289 (457)
Q Consensus       215 ~~h~~~v~~~~~~~~~~~l~~~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~d  289 (457)
                      .+|...+.+++|+|+|+.|+++ .++   .|++||+. .++...        +..|...+.+++|+|+| +.|+ +++.+
T Consensus       175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~-tg~~~~--------l~~~~~~~~~~~~spdg-~~la~~~~~~  244 (415)
T 2hqs_A          175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVRQ--------VASFPRHNGAPAFSPDG-SKLAFALSKT  244 (415)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEEE--------EECCSSCEEEEEECTTS-SEEEEEECTT
T ss_pred             eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCcEEE--------eecCCCcccCEEEcCCC-CEEEEEEecC
Confidence            4577789999999999999988 664   99999998 454443        34567789999999999 7666 66665


Q ss_pred             C--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--C--cEEEEeccCCCCcee
Q 012721          290 G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVA  363 (457)
Q Consensus       290 g--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~--~i~~wd~~~~~~~~~  363 (457)
                      +  .|++||+.+++..     .             +..|...+.+++|+|+|++|+.+++  +  .|++||+.. ++ ..
T Consensus       245 g~~~i~~~d~~~~~~~-----~-------------l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~  304 (415)
T 2hqs_A          245 GSLNLYVMDLASGQIR-----Q-------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQ  304 (415)
T ss_dssp             SSCEEEEEETTTCCEE-----E-------------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CE
T ss_pred             CCceEEEEECCCCCEE-----e-------------CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EE
Confidence            5  4999999886432     1             1234567999999999999987653  4  677778764 33 33


Q ss_pred             EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC---CcEEEEecCCCCceeeEEecCCCcceeeeeccCCc
Q 012721          364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  440 (457)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  440 (457)
                      .+..+...+               .+++|+|||++|++++.+   ..|++||+.+++ . ..+..+. .+..++|+|++.
T Consensus       305 ~l~~~~~~~---------------~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~-~-~~l~~~~-~~~~~~~spdg~  366 (415)
T 2hqs_A          305 RITWEGSQN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-V-QVLSSTF-LDETPSLAPNGT  366 (415)
T ss_dssp             ECCCSSSEE---------------EEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-E-EECCCSS-SCEEEEECTTSS
T ss_pred             EEecCCCcc---------------cCeEECCCCCEEEEEECcCCceEEEEEECCCCC-E-EEecCCC-CcCCeEEcCCCC
Confidence            444343322               579999999999988864   589999999883 3 4455554 899999999998


Q ss_pred             ceec
Q 012721          441 ARRS  444 (457)
Q Consensus       441 ~~~~  444 (457)
                      ...+
T Consensus       367 ~l~~  370 (415)
T 2hqs_A          367 MVIY  370 (415)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7666

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=1.9e-23  Score=202.67  Aligned_cols=267  Identities=9%  Similarity=0.059  Sum_probs=200.6

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEE
Q 012721           39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  118 (457)
Q Consensus        39 ~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~  118 (457)
                      +|+|++.++++++.|++|.+||..+++.                           +.++..+.            . +..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~---------------------------~~~i~~g~------------~-~~~  183 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKI---------------------------VKVIDTGY------------A-VHI  183 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECST------------T-EEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceE---------------------------EEEEecCc------------c-cce
Confidence            3889999999999999999999887763                           34555332            2 788


Q ss_pred             EEEEecCCCCEEEEeeCCCeEEEEEe--cccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccce
Q 012721          119 VRWCAAPNGSMFILSTNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  196 (457)
Q Consensus       119 v~~~~s~~~~~l~s~s~d~~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  196 (457)
                      ++|  +|+|++|++++.|+.|++||+  .+++....+.                                          
T Consensus       184 v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~------------------------------------------  219 (543)
T 1nir_A          184 SRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK------------------------------------------  219 (543)
T ss_dssp             EEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE------------------------------------------
T ss_pred             EEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe------------------------------------------
Confidence            999  899999999999999999999  6655433221                                          


Q ss_pred             EEEeccCccccccceeeccCCCCCeeEEEeCC----CCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCccc---CCC
Q 012721          197 KIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLT  267 (457)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~  267 (457)
                                          +...+..++|+|    +|++++++  .+++|.+||.. ..+.++.+........   -|.
T Consensus       220 --------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~  278 (543)
T 1nir_A          220 --------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHP  278 (543)
T ss_dssp             --------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEES
T ss_pred             --------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCcccccc
Confidence                                233578999999    99999887  58999999998 5666666543211111   122


Q ss_pred             -CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          268 -EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       268 -~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                       ..+..+.++|+++.++++...++.|.+||+.+.+...  ...+              .+...+..+.|+|+|+++++++
T Consensus       279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i--------------~~~~~~~~~~~spdg~~l~va~  342 (543)
T 1nir_A          279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSI--------------GAAPFLHDGGWDSSHRYFMTAA  342 (543)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEE--------------ECCSSCCCEEECTTSCEEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEe--------------ccCcCccCceECCCCCEEEEEe
Confidence             3788999999886788888899999999998764221  0011              1234577899999999887653


Q ss_pred             --cCcEEEEeccCCCCceeEeee----ccccccccccccCCCCccccceEE-EcCC-CcEEEEEe-CCCcEEEEecCC--
Q 012721          347 --YMNLKLWDIRMDSTPVATFKI----HEHLRPKLCDLYNNDSIFDKFECS-VSGD-GLHFATGS-YSNLLRIFSHGV--  415 (457)
Q Consensus       347 --~~~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~-~s~d-~~~l~s~~-~dg~i~iw~~~~--  415 (457)
                        +++|.+||+.+ ++++..+..    |.+.                 .+. ++|+ +..++++. .|++|.+||+.+  
T Consensus       343 ~~~~~v~v~D~~t-g~l~~~i~~g~~ph~g~-----------------g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~  404 (543)
T 1nir_A          343 NNSNKVAVIDSKD-RRLSALVDVGKTPHPGR-----------------GANFVHPKYGPVWSTSHLGDGSISLIGTDPKN  404 (543)
T ss_dssp             GGGTEEEEEETTT-TEEEEEEECSSSBCCTT-----------------CEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             cCCCeEEEEECCC-CeEEEeeccCCCCCCCC-----------------CcccCCCCCccEEEeccCCCceEEEEEeCCCC
Confidence              39999999986 777777764    3221                 223 4677 66677765 589999999998  


Q ss_pred             -----CCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          416 -----GSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       416 -----~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                           . +.+.++.+|...+..+++||+++...++
T Consensus       405 ~~~~~~-~~v~~l~~~g~~~~~v~~~pdg~~l~v~  438 (543)
T 1nir_A          405 HPQYAW-KKVAELQGQGGGSLFIKTHPKSSHLYVD  438 (543)
T ss_dssp             CTTTBT-SEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred             CchhcC-eEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence                 4 7789999999999999999999888874

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.4e-23  Score=213.31  Aligned_cols=282  Identities=9%  Similarity=0.072  Sum_probs=196.9

Q ss_pred             CCceEEEEECCCCCEEEEEeC-CC-----eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCc---
Q 012721           32 VDIVSAIEFDKTGDYLAVGDR-GG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP---  102 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---  102 (457)
                      ...|.+++|||||++||+++. |+     .|++||+.+++..                           ..+..+..   
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~---------------------------~~~~~~~~~~~   88 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR---------------------------LLVDSKVVLPG   88 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE---------------------------EEECGGGTC--
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee---------------------------Eccchhhcccc
Confidence            557999999999999999988 88     8999999887642                           11111110   


Q ss_pred             ---------cccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccc---ceeEEEeecCCCceeeeeecccc
Q 012721          103 ---------EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAE  170 (457)
Q Consensus       103 ---------~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  170 (457)
                               .......+.....|.+++|  +|||++|++++. +.|++||+.++   ....+                  
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l------------------  147 (741)
T 2ecf_A           89 TETLSDEEKARRERQRIAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL------------------  147 (741)
T ss_dssp             ------------------CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBC------------------
T ss_pred             cccccchhhhhhhhhhhccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEc------------------
Confidence                     0000000000023788999  899999999886 89999999876   33211                  


Q ss_pred             ccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCc
Q 012721          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD  250 (457)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~  250 (457)
                                                                  ..|...+.+++|+|||++|+++.++.|++||+. .+
T Consensus       148 --------------------------------------------~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~-~g  182 (741)
T 2ecf_A          148 --------------------------------------------THGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA-SG  182 (741)
T ss_dssp             --------------------------------------------CCSSSCEEEEEECTTSSEEEEEETTEEEEEETT-TT
T ss_pred             --------------------------------------------ccCCcccccccCCCCCCEEEEEeCCcEEEEecC-CC
Confidence                                                        456678999999999999999866799999998 45


Q ss_pred             ceeeeeecCCCcccCCCC----------------ceEEEEEecCCccEEEEEccCC------------------------
Q 012721          251 QCFNIVDMKPSNMDDLTE----------------VITSAEFHPIYCNLLAYSSSRG------------------------  290 (457)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~----------------~i~~v~~~p~~~~~l~~~~~dg------------------------  290 (457)
                      ....+.       ..+..                .+.+++|+||| +.|++++.|+                        
T Consensus       183 ~~~~~~-------~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~  254 (741)
T 2ecf_A          183 RQMQLT-------ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP  254 (741)
T ss_dssp             EEEECC-------CCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred             CEEEec-------cCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence            544432       11211                14779999999 8888887665                        


Q ss_pred             ---------eEEEEEccC-CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe------cCcEEEEe
Q 012721          291 ---------FVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------YMNLKLWD  354 (457)
Q Consensus       291 ---------~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~------~~~i~~wd  354 (457)
                               .|.+||+.+ ++..    .+...           ..|...+..++| |||++|+.+.      +..|++||
T Consensus       255 ~~g~~~~~~~l~~~d~~~~~~~~----~~~~~-----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d  318 (741)
T 2ecf_A          255 AAGDANVQVKLGVISPAEQAQTQ----WIDLG-----------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT  318 (741)
T ss_dssp             BTTSCCCEEEEEEECSSTTCCCE----EECCC-----------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred             CCCCCCCeeEEEEEECCCCCceE----EecCC-----------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence                     788888877 6432    11100           134567999999 9999998642      26799999


Q ss_pred             ccCCCCceeEeeecccc-ccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceee
Q 012721          355 IRMDSTPVATFKIHEHL-RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP  433 (457)
Q Consensus       355 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~  433 (457)
                      +.+ ++....+..+... +.            .+..++|+|||+++++++.||.++||.+..... ...+..+...+..+
T Consensus       319 ~~~-g~~~~~~~~~~~~~~~------------~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~  384 (741)
T 2ecf_A          319 LAS-NQQRVLAHETSPTWVP------------LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDEL  384 (741)
T ss_dssp             TTT-CCEEEEEEEECSSCCC------------CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEE
T ss_pred             CCC-CceEEEEEcCCCCcCC------------cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeE
Confidence            975 6666555554421 10            014789999999999999999888888763324 67777888888887


Q ss_pred             -eeccCCcceec
Q 012721          434 -ILQAAPRARRS  444 (457)
Q Consensus       434 -~~~p~~~~~~~  444 (457)
                       .|+|++.....
T Consensus       385 ~~~s~dg~~l~~  396 (741)
T 2ecf_A          385 LAVDEKAGLAYF  396 (741)
T ss_dssp             EEEETTTTEEEE
T ss_pred             eEEeCCCCEEEE
Confidence             59999975543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=4.2e-23  Score=185.12  Aligned_cols=253  Identities=11%  Similarity=0.115  Sum_probs=179.5

Q ss_pred             EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCC
Q 012721           49 VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS  128 (457)
Q Consensus        49 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~  128 (457)
                      .++.++.|++||+.+++.                            ..+..|.            ..|.+++|  +|+++
T Consensus        17 ~~~~~~~i~~~d~~~~~~----------------------------~~~~~~~------------~~v~~~~~--spdg~   54 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM----------------------------RVVWQTP------------ELFEAPNW--SPDGK   54 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE----------------------------EEEEEES------------SCCEEEEE--CTTSS
T ss_pred             CCCcceeEEEEeCCCCce----------------------------eeeccCC------------cceEeeEE--CCCCC
Confidence            346789999999987653                            2344455            78999999  78999


Q ss_pred             EEEEeeCCCeEEEEEecc-cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCcccc
Q 012721          129 MFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  207 (457)
Q Consensus       129 ~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  207 (457)
                      +|++++ ++.|.+||+.+ ++......                                                     
T Consensus        55 ~l~~~~-~~~i~~~d~~~~~~~~~~~~-----------------------------------------------------   80 (297)
T 2ojh_A           55 YLLLNS-EGLLYRLSLAGDPSPEKVDT-----------------------------------------------------   80 (297)
T ss_dssp             EEEEEE-TTEEEEEESSSCCSCEECCC-----------------------------------------------------
T ss_pred             EEEEEc-CCeEEEEeCCCCCCceEecc-----------------------------------------------------
Confidence            999876 78999999988 65443210                                                     


Q ss_pred             ccceeeccCCCCCeeEEEeCCCCCEEEEe-CC--CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721          208 RCQKVYPHAHDFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (457)
Q Consensus       208 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~  284 (457)
                             ..+...+.+++|+|++++|+++ .+  +...||.++........       +..+ ..+..++|+|++ +.|+
T Consensus        81 -------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~-~~~~~~~~spdg-~~l~  144 (297)
T 2ojh_A           81 -------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------MTKN-LPSYWHGWSPDG-KSFT  144 (297)
T ss_dssp             -------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------CCSS-SSEEEEEECTTS-SEEE
T ss_pred             -------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------eecC-CCccceEECCCC-CEEE
Confidence                   1224578899999999999887 33  44555554322222222       2222 348899999999 6665


Q ss_pred             -EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cCcEEEEeccCCCCc
Q 012721          285 -YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP  361 (457)
Q Consensus       285 -~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~~~~  361 (457)
                       +++.++.+++|++......   ...             +..|...+.+++|+|+|++|+.++  ++.+++|+++..+..
T Consensus       145 ~~~~~~~~~~l~~~~~~~~~---~~~-------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~  208 (297)
T 2ojh_A          145 YCGIRDQVFDIYSMDIDSGV---ETR-------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS  208 (297)
T ss_dssp             EEEEETTEEEEEEEETTTCC---EEE-------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             EEECCCCceEEEEEECCCCc---ceE-------------cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC
Confidence             7888999999996532100   011             123456789999999999888654  489999998744566


Q ss_pred             eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-----------CcEEEEecCCCCce-eeEEecCCCc
Q 012721          362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----------NLLRIFSHGVGSAG-GITVEAGKNE  429 (457)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----------g~i~iw~~~~~~~~-~~~~~~~~~~  429 (457)
                      +..+..+...+               ..++|+|++++|++++.+           +.|++||+.+++.. +..+.+|...
T Consensus       209 ~~~~~~~~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  273 (297)
T 2ojh_A          209 VERITDSAYGD---------------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGT  273 (297)
T ss_dssp             EEECCCCSEEE---------------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTT
T ss_pred             cEEEecCCccc---------------CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcc
Confidence            66666555432               579999999999988876           56999999988432 3344588999


Q ss_pred             ceeeeeccCCcceec
Q 012721          430 NRKPILQAAPRARRS  444 (457)
Q Consensus       430 v~~~~~~p~~~~~~~  444 (457)
                      +..+.|+|++....+
T Consensus       274 ~~~~~~spdg~~l~~  288 (297)
T 2ojh_A          274 MNSPNWSPDGDEFAY  288 (297)
T ss_dssp             SCSCCBCTTSSEEEE
T ss_pred             cccceECCCCCEEEE
Confidence            999999999987665

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=1.5e-21  Score=179.03  Aligned_cols=277  Identities=10%  Similarity=0.058  Sum_probs=171.7

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCC-CeEEEEEec--ccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d-~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      ..+.+++|  ++++++|++++.+ +.|.+|++.  ++.............+..++|++....++....            
T Consensus        38 ~~~~~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------------  103 (343)
T 1ri6_A           38 GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------------  103 (343)
T ss_dssp             SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------------
T ss_pred             CCCceEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEec------------
Confidence            56888999  7899988888876 999999998  666554444333334555666543332222111            


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeee--ecCCCcccCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--DMKPSNMDDL  266 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~  266 (457)
                       .++.+.+|+++.....+....+ . ....+.+++|+|++++++++  .++.|++||+...+......  ..    ....
T Consensus       104 -~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~~~  176 (343)
T 1ri6_A          104 -NAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV----TTVE  176 (343)
T ss_dssp             -TTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE----ECST
T ss_pred             -CCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc----ccCC
Confidence             1457999998522223333333 2 33458899999999877765  79999999998424333211  00    1112


Q ss_pred             CCceEEEEEecCCccEE-EEEccCCeEEEEEccC--CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          267 TEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l-~~~~~dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      ...+..++|+|++ +++ +++..++.|.+||+..  ++...  ......   .+..    ......+..++|+|+|++|+
T Consensus       177 ~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~~--~~~~~~---~~~~----~~~~~~~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          177 GAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIEC--VQTLDM---MPEN----FSDTRWAADIHITPDGRHLY  246 (343)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCEE--EEEEEC---SCTT----CCSCCCEEEEEECTTSSEEE
T ss_pred             CCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEEE--Eeeccc---cCcc----ccccCCccceEECCCCCEEE
Confidence            3567889999999 655 5555899999999954  32110  011110   0000    01123577899999999887


Q ss_pred             EEe--cCcEEEEeccCCC---CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecC--C
Q 012721          344 SRD--YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG--V  415 (457)
Q Consensus       344 s~~--~~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~--~  415 (457)
                      ++.  ++.|.+||+....   +.+..+..+...                ..++|+|++++|++++ .++.|.+|+++  +
T Consensus       247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          247 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQP----------------RGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSC----------------CCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred             EEecCCCEEEEEEEcCCCCceEEeeeecCCCcc----------------ceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence            543  4999999997312   223333333321                5899999999888887 58999999554  5


Q ss_pred             CCc-eeeEEecCCCcceeeeeccC
Q 012721          416 GSA-GGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       416 ~~~-~~~~~~~~~~~v~~~~~~p~  438 (457)
                      ++. ....+.. .....+++|.|+
T Consensus       311 g~~~~~~~~~~-g~~p~~i~~~~~  333 (343)
T 1ri6_A          311 GLLHEKGRYAV-GQGPMWVVVNAH  333 (343)
T ss_dssp             TEEEEEEEEEC-SSSCCEEEEEEE
T ss_pred             ceeeEcccccc-CCCCeeEEEEcc
Confidence            521 1222333 244566677664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=1.3e-21  Score=180.34  Aligned_cols=279  Identities=10%  Similarity=0.019  Sum_probs=197.5

Q ss_pred             ccCCceEEEEECCCCCEEEEEeC-------CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP  102 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  102 (457)
                      .....+..++|+|+|++|++++.       ++.|.+||..+++.                           +..+...  
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~--   88 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV---------------------------TQAIHND--   88 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE---------------------------EEEEEES--
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------------EEEEecC--
Confidence            35678899999999998888774       56899999887763                           2222221  


Q ss_pred             cccccccccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (457)
Q Consensus       103 ~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (457)
                                 ..+..++|  ++++++++. ...++.|.+||..+++....+......                      
T Consensus        89 -----------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------------------  133 (353)
T 3vgz_A           89 -----------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK----------------------  133 (353)
T ss_dssp             -----------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCC----------------------
T ss_pred             -----------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCc----------------------
Confidence                       34667888  688885554 556799999999988765544321100                      


Q ss_pred             ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCcceeeeeec
Q 012721          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDM  258 (457)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~  258 (457)
                                                ..    .......+.+++|+|+++.++++   .++.|.+||.. .++....+  
T Consensus       134 --------------------------~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~~--  180 (353)
T 3vgz_A          134 --------------------------RT----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTAI--  180 (353)
T ss_dssp             --------------------------CC----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEEE--
T ss_pred             --------------------------cc----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEEe--
Confidence                                      00    00111136789999999977765   37899999998 55555442  


Q ss_pred             CCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (457)
Q Consensus       259 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  338 (457)
                           ..+...+.+++|+|++ +.+++++.++.|.+||+.+++..    ..+.. .        ..++...+..++|+|+
T Consensus       181 -----~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~-~--------~~~~~~~~~~~~~s~d  241 (353)
T 3vgz_A          181 -----QNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKL-L--------DDGKEHFFINISLDTA  241 (353)
T ss_dssp             -----CCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEEC-C--------CSSSCCCEEEEEEETT
T ss_pred             -----cCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEc-C--------CCCCCcccceEEECCC
Confidence                 3234457789999999 88888999999999999987644    12111 0        0122356788999999


Q ss_pred             CCeEEEEe-c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCC
Q 012721          339 GQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV  415 (457)
Q Consensus       339 g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~  415 (457)
                      |++++.++ + +.|.+||+.+ ++.+..+.....                 ..++|+||+++++.++ .++.|.+||+.+
T Consensus       242 g~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          242 RQRAFITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             TTEEEEEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            99887654 3 8999999975 677766664432                 3799999999766655 689999999998


Q ss_pred             CCceeeEEecCCCcceeeeeccCCcceec
Q 012721          416 GSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       416 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      + +....+... ..+..++|+|++.....
T Consensus       304 ~-~~~~~~~~~-~~~~~~~~s~dg~~l~v  330 (353)
T 3vgz_A          304 Y-KVVKTFDTP-THPNSLALSADGKTLYV  330 (353)
T ss_dssp             T-EEEEEEECC-SEEEEEEECTTSCEEEE
T ss_pred             C-eEEEEEecC-CCCCeEEEcCCCCEEEE
Confidence            8 555555543 46789999999985544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=8.9e-22  Score=206.83  Aligned_cols=181  Identities=8%  Similarity=0.060  Sum_probs=144.1

Q ss_pred             CCCCeeEEEeC-CCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCC-ceEEEEEecCCccEEEEEccCCeEE-
Q 012721          217 HDFNINSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-VITSAEFHPIYCNLLAYSSSRGFVR-  293 (457)
Q Consensus       217 h~~~v~~~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~i~~v~~~p~~~~~l~~~~~dg~i~-  293 (457)
                      |...+.+++|+ |+|+.|+++.++.|++|++. .+....        +..|.. .+..++|+ +| +.|++++.++.+. 
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~-~~~~~~--------~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~  362 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVS-GTYVLK--------VPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLG  362 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEETTEEEEECTT-SSBEEE--------CSCCSCEEEEEECSS-SE-EEEEEEETTEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEEcCEEEEEcCC-CCceEE--------ccCCCcceEEeeeEc-CC-CeEEEEECCCceEE
Confidence            34468999999 99999998878899999988 444332        345666 89999999 98 8888888888888 


Q ss_pred             EEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccc
Q 012721          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  372 (457)
Q Consensus       294 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~  372 (457)
                      +||+.+++..    .+              .+|...+..++|+|||++|++++. +.|++||+.+ ++.......|...+
T Consensus       363 ~~d~~~~~~~----~l--------------~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v  423 (1045)
T 1k32_A          363 IYDYRTGKAE----KF--------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERSREAMI  423 (1045)
T ss_dssp             EEETTTCCEE----EC--------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCC
T ss_pred             EEECCCCCce----Ee--------------cCCccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccCCCCCc
Confidence            8998875422    11              134567999999999999998875 8999999975 66666665666543


Q ss_pred             cccccccCCCCccccceEEEcCCCcEEEEEeCCC----------cEEEEecCCCCceeeEEecCCCcceeeeeccCCcce
Q 012721          373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN----------LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR  442 (457)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg----------~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  442 (457)
                                     ..++|+|||++|++++.++          .|++||+.++ + ...+..|...+..++|+|++...
T Consensus       424 ---------------~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~-~~~l~~~~~~~~~~~~spdG~~l  486 (1045)
T 1k32_A          424 ---------------TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-K-IFAATTENSHDYAPAFDADSKNL  486 (1045)
T ss_dssp             ---------------CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-E-EEECSCSSSBEEEEEECTTSCEE
T ss_pred             ---------------cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-c-EEEeeCCCcccCCceEcCCCCEE
Confidence                           5899999999999887654          8999999988 3 66778888889999999999866


Q ss_pred             ec
Q 012721          443 RS  444 (457)
Q Consensus       443 ~~  444 (457)
                      .+
T Consensus       487 ~~  488 (1045)
T 1k32_A          487 YY  488 (1045)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=2.5e-21  Score=176.92  Aligned_cols=276  Identities=10%  Similarity=0.072  Sum_probs=178.9

Q ss_pred             CCceEEEEECCCCCEEEEEeC-CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      ...+ +++|+|+|++|++++. ++.|.+||..+++.                          ....+..+.         
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--------------------------~~~~~~~~~---------   83 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--------------------------KVVAIQEGQ---------   83 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------------------------EEEEEEECS---------
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------------------------eEEecccCC---------
Confidence            4556 9999999997766655 88999999987763                          123444444         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCC---eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                         .+..+++|  ++++++++++..++   .|.+||+.+++......                                 
T Consensus        84 ---~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~---------------------------------  125 (331)
T 3u4y_A           84 ---SSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP---------------------------------  125 (331)
T ss_dssp             ---SCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE---------------------------------
T ss_pred             ---CCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE---------------------------------
Confidence               44555899  78999988655553   89999998876654321                                 


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCe-EEEEEcCCCcceeeeeecCCCccc
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR-INLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~-i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                                   ......+++|+|+|++++++  .++. |.+|++...+...... .   ...
T Consensus       126 -----------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~---~~~  172 (331)
T 3u4y_A          126 -----------------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q---EFI  172 (331)
T ss_dssp             -----------------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E---EEE
T ss_pred             -----------------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C---ccc
Confidence                                         12245799999999866554  6677 9999998444332210 0   011


Q ss_pred             CCCCceEEEEEecCCcc-EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          265 DLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      .....+..++|+|+| + +++++..++.|.+||+.+++... ....+..              ...+..++|+|+|++|+
T Consensus       173 ~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~--------------~~~~~~~~~spdg~~l~  236 (331)
T 3u4y_A          173 SGGTRPFNITFTPDG-NFAFVANLIGNSIGILETQNPENIT-LLNAVGT--------------NNLPGTIVVSRDGSTVY  236 (331)
T ss_dssp             CSSSSEEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSCE-EEEEEEC--------------SSCCCCEEECTTSSEEE
T ss_pred             cCCCCccceEECCCC-CEEEEEeCCCCeEEEEECCCCcccc-eeeeccC--------------CCCCceEEECCCCCEEE
Confidence            233557899999999 6 55666678999999998875410 0112221              24577899999999887


Q ss_pred             EEe--cCcEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCCc
Q 012721          344 SRD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSA  418 (457)
Q Consensus       344 s~~--~~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~  418 (457)
                      .++  ++.|.+||+.+ ++.  +..+..+-..-        .........++|+||+++|++++. ++.|.+||+...  
T Consensus       237 v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~--  305 (331)
T 3u4y_A          237 VLTESTVDVFNFNQLS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANISRELKVFTISGK--  305 (331)
T ss_dssp             EECSSEEEEEEEETTT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC--
T ss_pred             EEEcCCCEEEEEECCC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC--
Confidence            654  38899999975 544  33222220000        001111135899999998876655 569999999865  


Q ss_pred             eeeEEecCCCcceeeeeccCCcc
Q 012721          419 GGITVEAGKNENRKPILQAAPRA  441 (457)
Q Consensus       419 ~~~~~~~~~~~v~~~~~~p~~~~  441 (457)
                      ......+....-....++|++..
T Consensus       306 ~~~~~~~~~~~g~~~~~~~~~~~  328 (331)
T 3u4y_A          306 VVGYVAGIEANGGIAICHPDKHN  328 (331)
T ss_dssp             EEEECTTCCCBSCEEECCCC---
T ss_pred             cccceecccccCCeEEECCcccc
Confidence            33444455555556667777654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=1.2e-22  Score=205.68  Aligned_cols=318  Identities=9%  Similarity=-0.010  Sum_probs=200.3

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      ..+.+++|+|||+++++ +.||+|++||+.+++.                           ...+.+|...         
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~---------------------------~~~~~~~~~~---------   59 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS---------------------------TVLIEGKKIE---------   59 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC---------------------------EEEECTTTTT---------
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcE---------------------------EEEecccccc---------
Confidence            34788999999998876 7899999999988764                           2334444410         


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCC---------CeEEEEEecccceeEEEeecCC-CceeeeeeccccccccccCCCCCc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHF-PFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d---------~~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                      ...|.+++|  +|||++|++++.+         +.|.+||+.+++...+...... ..+..++|                
T Consensus        60 ~~~v~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~----------------  121 (723)
T 1xfd_A           60 SLRAIRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGW----------------  121 (723)
T ss_dssp             TTTCSEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCB----------------
T ss_pred             ccccceEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEE----------------
Confidence            014899999  8999999998764         7888999998876332211111 11333333                


Q ss_pred             eeccCCcc---ccccceEEEeccCccccccceeeccCCCC------------------CeeEEEeCCCCCEEEEe-CCC-
Q 012721          183 AHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDF------------------NINSISNNSDCETFVSA-DDL-  239 (457)
Q Consensus       183 ~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~~~l~~~-~d~-  239 (457)
                        +++|..   ...+.+++|+.....   ..+.. ..+..                  .+.+++|+|||+.|+++ .|+ 
T Consensus       122 --SPdG~~la~~~~~~i~~~~~~~g~---~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~  195 (723)
T 1xfd_A          122 --GPKGQQLIFIFENNIYYCAHVGKQ---AIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS  195 (723)
T ss_dssp             --CSSTTCEEEEETTEEEEESSSSSC---CEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred             --CCCCCEEEEEECCeEEEEECCCCc---eEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC
Confidence              444431   223578888886532   22222 22222                  23789999999999887 442 


Q ss_pred             ---------------------------------eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEE
Q 012721          240 ---------------------------------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  286 (457)
Q Consensus       240 ---------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~  286 (457)
                                                       .|++||+. .+.....+... ..+..+...+..++|+||| ++|++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~SpDg-~~l~~~  272 (723)
T 1xfd_A          196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN-GPTHDLEMMPP-DDPRMREYYITMVKWATST-KVAVTW  272 (723)
T ss_dssp             TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS-SSCCCEECCCC-CCGGGSSEEEEEEEESSSS-EEEEEE
T ss_pred             ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC-CCceeEEeeCC-ccCCCccceeEEEEEeCCC-eEEEEE
Confidence                                             78899988 44432222110 1122346789999999999 888766


Q ss_pred             cc----CCeEEEEEccCCeeeccccccccccccccCcccceeccccce----EEEEEccCCCeEEEE-e--cC------c
Q 012721          287 SS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI----SDIKFANDGQHLLSR-D--YM------N  349 (457)
Q Consensus       287 ~~----dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~~~~s~~g~~l~s~-~--~~------~  349 (457)
                      +.    +..|.+||+.+++..    .+...            .+...+    ..++|+|||+.|+.. +  ++      .
T Consensus       273 ~~~~~~~~~i~~~d~~~g~~~----~~~~~------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  336 (723)
T 1xfd_A          273 LNRAQNVSILTLCDATTGVCT----KKHED------------ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH  336 (723)
T ss_dssp             EETTSCEEEEEEEETTTCCEE----EEEEE------------ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred             EcCCCCeEEEEEEeCCCCcce----EEEEe------------ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence            43    357999999887543    22221            011222    378999999988753 3  25      4


Q ss_pred             EEEEeccCCCCc--eeEeeeccccccccccccCCCCccccce-EEEcCCCcEEEEEeCC---CcEEEEecCCCCc-eeeE
Q 012721          350 LKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFE-CSVSGDGLHFATGSYS---NLLRIFSHGVGSA-GGIT  422 (457)
Q Consensus       350 i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~d~~~l~s~~~d---g~i~iw~~~~~~~-~~~~  422 (457)
                      |++||+...+..  ...+..+...+               .. ++|+|||+.|+..+.+   +.++||++..... ....
T Consensus       337 l~~~d~~~~~~~~~~~~l~~~~~~~---------------~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  401 (723)
T 1xfd_A          337 ITVSSSQPNSSNDNIQSITSGDWDV---------------TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC  401 (723)
T ss_dssp             EEEECSSCCSSSCCCCBSCCSSSCE---------------EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBC
T ss_pred             EEEEeccCCCCccceeEeecCCeEE---------------EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcce
Confidence            666773222331  33443222211               23 6899999999876655   7899999875422 2333


Q ss_pred             Eec---CCCcceeeeeccCCcceecc
Q 012721          423 VEA---GKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       423 ~~~---~~~~v~~~~~~p~~~~~~~~  445 (457)
                      +..   |...+..++|+|++...+..
T Consensus       402 l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          402 LSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             SSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             ecccccCCCCeEEEEECCCCCEEEEE
Confidence            443   67778999999998766653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=6.2e-21  Score=175.51  Aligned_cols=268  Identities=11%  Similarity=0.120  Sum_probs=170.8

Q ss_pred             ccCCceEEEEECCCCCEEEEEeC---CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      .+...+..++|+|||+ |++++.   ++.|.+|++.++..                         +.+..+..+.     
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------------------~~~~~~~~~~-----   85 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------------------HKLNTVVAPG-----   85 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------------------EEEEEEEEES-----
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------------------EEeeeeecCC-----
Confidence            3567788899999999 554443   68999999976653                         1333334444     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEEec-ccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                             ..+..++|  ++++++|++++ .++.|.+|++. ++............                         
T Consensus        86 -------~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-------------------------  131 (347)
T 3hfq_A           86 -------TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG-------------------------  131 (347)
T ss_dssp             -------CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC-------------------------
T ss_pred             -------CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC-------------------------
Confidence                   56888999  78999888887 78999999995 33333222111000                         


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                                           . .+.   ...+...+.+++|+|+++++++. .++.|.+|++...+........    .
T Consensus       132 ---------------------~-~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~----~  182 (347)
T 3hfq_A          132 ---------------------H-GPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL----T  182 (347)
T ss_dssp             ---------------------C-CSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE----E
T ss_pred             ---------------------C-CCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE----E
Confidence                                 0 000   01234468899999999966666 7899999999843433222110    0


Q ss_pred             cCCCCceEEEEEecCCcc-EEEEEccCCeEEEEEccC--CeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          264 DDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                      ......+..++|+|+| + +++++..++.|.+|++..  ++...  ...+..   .+..   + .....+..++|+|+|+
T Consensus       183 ~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~--~~~~~~---~~~~---~-~~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          183 MEAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFTQ--LGIVKT---IPAD---Y-TAHNGAAAIRLSHDGH  252 (347)
T ss_dssp             CCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEEE--EEEEES---SCTT---C-CSCCEEEEEEECTTSC
T ss_pred             cCCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceEE--eeeeee---cCCC---C-CCCCcceeEEECCCCC
Confidence            1122357789999999 7 455567889999999874  33210  011111   0000   0 0113588999999999


Q ss_pred             eEEEE-e-cCcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-CcEEEEe--c
Q 012721          341 HLLSR-D-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFS--H  413 (457)
Q Consensus       341 ~l~s~-~-~~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~i~iw~--~  413 (457)
                      +|+++ . ++.|.+|++...+  +.+..+..+....               ..++|+|||++|++++.+ +.|.+|+  .
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP---------------RDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC---------------CEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc---------------CeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            88644 4 4999999996322  2333333332221               589999999999888765 8999995  4


Q ss_pred             CCC
Q 012721          414 GVG  416 (457)
Q Consensus       414 ~~~  416 (457)
                      .++
T Consensus       318 ~tg  320 (347)
T 3hfq_A          318 TSG  320 (347)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            556

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=5.3e-22  Score=201.60  Aligned_cols=288  Identities=10%  Similarity=0.060  Sum_probs=193.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEecCC---ccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGG---KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      .|.+++|||||++|++++. +.|++||+.++   +.                            ..+..|.         
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~----------------------------~~l~~~~---------  151 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV----------------------------RQLTHGE---------  151 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC----------------------------CBCCCSS---------
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE----------------------------EEcccCC---------
Confidence            4889999999999999886 89999999877   32                            2345555         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ..+..++|  +|||++|++++. +.|++||+.+++...+....... +.                        .+  
T Consensus       152 ---~~~~~~~~--SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~-~~------------------------~g--  198 (741)
T 2ecf_A          152 ---GFATDAKL--SPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTT-IG------------------------NG--  198 (741)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSS-EE------------------------ES--
T ss_pred             ---cccccccC--CCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccc-ee------------------------cc--
Confidence               67999999  899999998874 68999999887654432110000 00                        00  


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCC------------------------------
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL------------------------------  239 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~------------------------------  239 (457)
                                .       ..... ......+..++|+|||++|+++ .|+                              
T Consensus       199 ----------~-------~~~v~-~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          199 ----------I-------AEFVA-DEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             ----------C-------CCHHH-HHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             ----------c-------cceee-eeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence                      0       00000 0011235789999999999887 554                              


Q ss_pred             ---eEEEEEcCCC-cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc-----CCeEEEEEccCCeeeccccccc
Q 012721          240 ---RINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARIL  310 (457)
Q Consensus       240 ---~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----dg~i~lwd~~~~~~~~~~~~~~  310 (457)
                         .|++||+. . ++...+. .    ...|...+..++| |+| +.|++++.     +..|.+||+.+++..    .++
T Consensus       261 ~~~~l~~~d~~-~~~~~~~~~-~----~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~----~~~  328 (741)
T 2ecf_A          261 VQVKLGVISPA-EQAQTQWID-L----GKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQR----VLA  328 (741)
T ss_dssp             CEEEEEEECSS-TTCCCEEEC-C----CSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEE----EEE
T ss_pred             CeeEEEEEECC-CCCceEEec-C----CCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceE----EEE
Confidence               78889988 4 4443321 0    1247788999999 999 87776653     578999999987543    222


Q ss_pred             cccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccce
Q 012721          311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  389 (457)
Q Consensus       311 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  389 (457)
                      ..+..         .....+..++|+|||+++++++. +.++||.++..++ ...+..+...+               ..
T Consensus       329 ~~~~~---------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v---------------~~  383 (741)
T 2ecf_A          329 HETSP---------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSV---------------DE  383 (741)
T ss_dssp             EEECS---------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCE---------------EE
T ss_pred             EcCCC---------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEE---------------Ee
Confidence            22000         00013467899999998887765 8788887764345 66666554432               35


Q ss_pred             E-EEcCCCcEEEE-EeCCC--cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccc
Q 012721          390 C-SVSGDGLHFAT-GSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       390 ~-~~s~d~~~l~s-~~~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~  448 (457)
                      + .|+||++.|+. ++.++  .++||++.........+.. ...+..+.|+|++...+...++
T Consensus       384 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          384 LLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             EEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred             EeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecC
Confidence            5 59999987764 55555  8999998753344555555 6667899999999877664443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=1.6e-20  Score=171.60  Aligned_cols=264  Identities=10%  Similarity=0.055  Sum_probs=175.4

Q ss_pred             EEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcE
Q 012721           38 IEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (457)
Q Consensus        38 ~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V  116 (457)
                      ..|.++++ .+++++.++.|.+||..+++.                           +..+..+.            ..+
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~------------~~~   43 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI---------------------------LNQITLGY------------DFV   43 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECCC------------CEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccce---------------------------eeeEEccC------------Ccc
Confidence            34566554 467788899999999987763                           23333333            456


Q ss_pred             EEEEEEecCCCCEEEEeeC-CCeEEEEEecccce-eEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          117 NRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       117 ~~v~~~~s~~~~~l~s~s~-d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                       .++|  +++++++++++. ++.|.+||..+++. ....                                         
T Consensus        44 -~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-----------------------------------------   79 (331)
T 3u4y_A           44 -DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-----------------------------------------   79 (331)
T ss_dssp             -EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-----------------------------------------
T ss_pred             -eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEec-----------------------------------------
Confidence             8999  789987776655 89999999988765 2221                                         


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC-C--eEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-L--RINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                          ..+..+..+++|+|++++++++ .+ +  .|.+||+. .++....+       . ....+
T Consensus        80 --------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~-------~-~~~~~  130 (331)
T 3u4y_A           80 --------------------QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTI-------P-IPYDA  130 (331)
T ss_dssp             --------------------EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEE-------E-CCTTE
T ss_pred             --------------------ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC-CCCeEEEE-------E-CCCCc
Confidence                                2233445559999999999976 44 3  99999998 55555443       2 22446


Q ss_pred             EEEEEecCCccEEEEEccCCe-EEEEEccCCeeeccc-cccccccccccCcccceeccccceEEEEEccCCCeEEEEe--
Q 012721          271 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  346 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~-i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--  346 (457)
                      .+++|+|+|..++++...++. |.+|++......... ...+              ........++|+|+|++++.++  
T Consensus       131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~spdg~~l~v~~~~  196 (331)
T 3u4y_A          131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI--------------SGGTRPFNITFTPDGNFAFVANLI  196 (331)
T ss_dssp             EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE--------------CSSSSEEEEEECTTSSEEEEEETT
T ss_pred             cceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc--------------cCCCCccceEECCCCCEEEEEeCC
Confidence            899999999335555556688 999998864321100 0111              1134578999999999776554  


Q ss_pred             cCcEEEEeccCCCCc---eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCCCce-ee
Q 012721          347 YMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAG-GI  421 (457)
Q Consensus       347 ~~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~~~~-~~  421 (457)
                      ++.|++||+.. ++.   +..+..+...                ..++|+|||++|+.++ .++.|.+||+.+++.. ..
T Consensus       197 ~~~v~v~d~~~-~~~~~~~~~~~~~~~~----------------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~  259 (331)
T 3u4y_A          197 GNSIGILETQN-PENITLLNAVGTNNLP----------------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK  259 (331)
T ss_dssp             TTEEEEEECSS-TTSCEEEEEEECSSCC----------------CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCC-CcccceeeeccCCCCC----------------ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeec
Confidence            38999999975 666   5555544332                5799999999776655 4788999999988321 22


Q ss_pred             EEecC----CCcc---eeeeeccCCcceec
Q 012721          422 TVEAG----KNEN---RKPILQAAPRARRS  444 (457)
Q Consensus       422 ~~~~~----~~~v---~~~~~~p~~~~~~~  444 (457)
                      .+..+    ..+.   ..++|+|++.....
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  289 (331)
T 3u4y_A          260 SFGHGLLIDPRPLFGANQMALNKTETKLFI  289 (331)
T ss_dssp             EEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred             ccccccccCCCCcccccceEECCCCCEEEE
Confidence            22222    2222   45899999986543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=5.2e-21  Score=171.44  Aligned_cols=234  Identities=13%  Similarity=0.142  Sum_probs=165.2

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecC-CccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ...|...|.+++|+|+|++|++++ ++.|++||+.+ ++.                           ...+.++.     
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------------------------~~~~~~~~-----   83 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------------------------EKVDTGFA-----   83 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------------------------EECCCTTC-----
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------------------------eEeccccc-----
Confidence            455889999999999999999987 77999999987 653                           12233332     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEee--CCCeEEEEEec--ccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s--~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                            ...|.+++|  ++++++|++++  .++...+|.+.  ++....                               
T Consensus        84 ------~~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------------------------------  124 (297)
T 2ojh_A           84 ------TICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------------------------------  124 (297)
T ss_dssp             ------CCBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------------------------------
T ss_pred             ------cccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------------------------------
Confidence                  156888999  78999999988  44566666654  332111                               


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                                                      ..+...+..++|+|+++.|+ ++ .++.+++|+++........     
T Consensus       125 --------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~-----  167 (297)
T 2ojh_A          125 --------------------------------MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR-----  167 (297)
T ss_dssp             --------------------------------CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE-----
T ss_pred             --------------------------------eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE-----
Confidence                                            11222488899999999887 56 8999999997533322222     


Q ss_pred             CcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEccC-CeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721          261 SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (457)
Q Consensus       261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  338 (457)
                        +..+...+.+++|+|++ +.|++++ .++.+++|++.. +...    ..             +..|...+..++|+|+
T Consensus       168 --~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~----~~-------------~~~~~~~~~~~~~s~d  227 (297)
T 2ojh_A          168 --LTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSV----ER-------------ITDSAYGDWFPHPSPS  227 (297)
T ss_dssp             --CCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCE----EE-------------CCCCSEEEEEEEECTT
T ss_pred             --cccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCc----EE-------------EecCCcccCCeEECCC
Confidence              45577889999999999 7666555 689999998863 2111    11             1234467889999999


Q ss_pred             CCeEEEEec------------CcEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721          339 GQHLLSRDY------------MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (457)
Q Consensus       339 g~~l~s~~~------------~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  404 (457)
                      |++|++++.            +.|++||+.. ++.  +..+..|...+               ..++|+||+++|++++.
T Consensus       228 g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          228 GDKVVFVSYDADVFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTM---------------NSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             SSEEEEEEEETTCCSCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTS---------------CSCCBCTTSSEEEEEEE
T ss_pred             CCEEEEEEcCCCCCcccccCceEEEEEecCC-CCceeeeccCCCCccc---------------ccceECCCCCEEEEEEe
Confidence            999987642            4599999975 444  33333555443               57999999999998876


Q ss_pred             CC
Q 012721          405 SN  406 (457)
Q Consensus       405 dg  406 (457)
                      |.
T Consensus       292 ~~  293 (297)
T 2ojh_A          292 FP  293 (297)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=4.3e-21  Score=193.79  Aligned_cols=284  Identities=8%  Similarity=0.054  Sum_probs=190.2

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      ..|.+++|||| +.++.+. ++.|++||+.+++.                            ..+..+.           
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~----------------------------~~l~~~~-----------  120 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKV----------------------------TYLFDTN-----------  120 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEE----------------------------EEEECCT-----------
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCce----------------------------EEccCCc-----------
Confidence            57999999999 6665554 58999999987653                            1233344           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc-----cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                       ..+.+++|  +|+|+.|+++ .|+.|++|++.+     ++...+....... +                          
T Consensus       121 -~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~-~--------------------------  169 (706)
T 2z3z_A          121 -EETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET-L--------------------------  169 (706)
T ss_dssp             -TCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT-E--------------------------
T ss_pred             -ccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC-e--------------------------
Confidence             56788999  7999999885 689999999988     6544322111000 0                          


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-----------------------------
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----------------------------  237 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-----------------------------  237 (457)
                                .+-       ..  .. ..+...+.+++|+|||++|+++ .                             
T Consensus       170 ----------~~g-------~~--~~-~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g  229 (706)
T 2z3z_A          170 ----------VYG-------QA--VH-QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG  229 (706)
T ss_dssp             ----------EES-------SC--CG-GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred             ----------Ecc-------cc--hh-hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence                      000       00  00 2233457889999999999886 3                             


Q ss_pred             ----CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC-----eEEEEEccCCeeeccccc
Q 012721          238 ----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSAR  308 (457)
Q Consensus       238 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-----~i~lwd~~~~~~~~~~~~  308 (457)
                          +..|++||+. .+....+.     ....|...+.+++|+|+| +.|++++.++     .|.+||+.+++...   .
T Consensus       230 ~~~~~~~l~~~d~~-~~~~~~~~-----~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~  299 (706)
T 2z3z_A          230 TPSHHVTVGIYHLA-TGKTVYLQ-----TGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVR---T  299 (706)
T ss_dssp             SCCCEEEEEEEETT-TTEEEECC-----CCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEE---E
T ss_pred             CCCCeeEEEEEECC-CCceEeec-----cCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceee---E
Confidence                2579999998 45443321     112467789999999999 8888887765     89999999873221   1


Q ss_pred             cccccccccCcccceeccccceEEEEEcc--CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCcc
Q 012721          309 ILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF  385 (457)
Q Consensus       309 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (457)
                      +... .. .       .....+..++|+|  +|+++++++. +.+++|+++..+..+..+..+...+             
T Consensus       300 ~~~~-~~-~-------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v-------------  357 (706)
T 2z3z_A          300 LFVE-TD-K-------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV-------------  357 (706)
T ss_dssp             EEEE-EC-S-------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE-------------
T ss_pred             EEEc-cC-C-------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE-------------
Confidence            1111 00 0       0011246789999  9999888764 8899998874466666666554432             


Q ss_pred             ccce-EEEcCCCcEEEEEeC-CC----cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          386 DKFE-CSVSGDGLHFATGSY-SN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       386 ~v~~-~~~s~d~~~l~s~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                        .. ++|+||++.|+.++. ++    .|+.||+.+++  ...+ .+...+..++|+|++...+.+
T Consensus       358 --~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l-~~~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          358 --TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDL-TPESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             --EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEES-CCSSSEEEEEECTTSSEEEEE
T ss_pred             --EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceec-cCCCceEEEEECCCCCEEEEE
Confidence              34 799999998876554 44    67777777763  2333 367778999999999876654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.5e-19  Score=170.63  Aligned_cols=178  Identities=11%  Similarity=0.140  Sum_probs=127.4

Q ss_pred             cccCCceEEEEECCCCCEEE----EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLA----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~la----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      +.|...|++++|+|+|++||    +|+.|+.|+|||+.+......                ........+..+.+|.   
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~h~---  149 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK----------------QQKRPFAYHKLLKDAG---  149 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC----------------SSCCCSEEEECCCSGG---
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc----------------CCcceeeeeeccCCCC---
Confidence            44667899999999999999    788999999999876410000                0000111245566777   


Q ss_pred             cccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                               ..|.+++|  +|+ +.+|++++.||+|++||+.++......                              
T Consensus       150 ---------~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~------------------------------  188 (434)
T 2oit_A          150 ---------GMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVKVCAT------------------------------  188 (434)
T ss_dssp             ---------GSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEEEEEE------------------------------
T ss_pred             ---------CceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCcceeec------------------------------
Confidence                     88999999  565 789999999999999999887432110                              


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCc
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                                                     .+|...|.+++|+|+|++|++| .|+.|++||++ . .....+......
T Consensus       189 -------------------------------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~  235 (434)
T 2oit_A          189 -------------------------------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFY  235 (434)
T ss_dssp             -------------------------------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTC
T ss_pred             -------------------------------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C-cccccccCCccc
Confidence                                           3577899999999999999999 99999999998 3 333332211111


Q ss_pred             ccCCCCceEEEEEecCCccEEEE-EccCC------eEEEEEccCC
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAY-SSSRG------FVRLVDMRQS  300 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~-~~~dg------~i~lwd~~~~  300 (457)
                      ...|...+.+++|++++ .++++ +..+|      .+++||+++.
T Consensus       236 ~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          236 ESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccC
Confidence            11345589999999987 66544 33443      3899999865

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=1.1e-20  Score=186.26  Aligned_cols=256  Identities=14%  Similarity=0.060  Sum_probs=175.4

Q ss_pred             cCCceEEEEECCCCCEEEEEeC-CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      +..+|++++|+|||++||+++. ||+++||++++++.                            ..+..|..       
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~----------------------------~~lt~~~~-------   64 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET----------------------------VKLNREPI-------   64 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE----------------------------EECCSSCC-------
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc----------------------------Eeeecccc-------
Confidence            3568999999999999999876 99999999876553                            22333320       


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeC---CCeEEEEEecc--cceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~---d~~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                          ..+..+.|  +|+ +++++++.   +...++|.+..  ......+                               
T Consensus        65 ----~~~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l-------------------------------  106 (582)
T 3o4h_A           65 ----NSVLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL-------------------------------  106 (582)
T ss_dssp             ----SEECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC-------------------------------
T ss_pred             ----cccccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCccccc-------------------------------
Confidence                46889999  677 67776664   45567766543  2111100                               


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC--EEEEeCCCeEEEEEcCCCcceeeeeecCCCc
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                                                    . ....+...+|+|+++  .++++.++.+.+||+. .++...+.      
T Consensus       107 ------------------------------~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~~~l~------  148 (582)
T 3o4h_A          107 ------------------------------E-AVKPMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELA------  148 (582)
T ss_dssp             ------------------------------T-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEE------
T ss_pred             ------------------------------c-CCCCceeeeeCCCCCeEEEEecCCCCceEEEcc-CCcEEEee------
Confidence                                          0 111233556777765  4444555555599998 55544432      


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEccC----CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~~d----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  338 (457)
                        .+..  .+++|+||| ++|++++.+    +.|++||+.+++..     .             +..|...+..++||||
T Consensus       149 --~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-----~-------------l~~~~~~~~~~~~SpD  205 (582)
T 3o4h_A          149 --RLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-----V-------------FDSGEGSFSSASISPG  205 (582)
T ss_dssp             --EESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-----E-------------ECCSSCEEEEEEECTT
T ss_pred             --cCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-----E-------------eecCCCccccceECCC
Confidence              1222  789999999 999988776    78999999887532     1             2334567899999999


Q ss_pred             CCeEEEEec-C--cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEE--------EcCCCcEEEEEeCCCc
Q 012721          339 GQHLLSRDY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--------VSGDGLHFATGSYSNL  407 (457)
Q Consensus       339 g~~l~s~~~-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~d~~~l~s~~~dg~  407 (457)
                      |++|++++. +  .|++||+.. ++.. .+..+...+               ..++        |+|||.++++++.|++
T Consensus       206 G~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~---------------~~~~~~~~~~~~~spdg~~~~~~~~~g~  268 (582)
T 3o4h_A          206 MKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDF---------------SSYRPTAITWLGYLPDGRLAVVARREGR  268 (582)
T ss_dssp             SCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHH---------------HHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred             CCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcCh---------------hhhhhccccceeEcCCCcEEEEEEcCCc
Confidence            999996654 6  899999975 5555 555555433               2445        9999999999999999


Q ss_pred             EEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          408 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       408 i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +++|++  + +...   ...+.+..++|+ ++....+
T Consensus       269 ~~l~~~--g-~~~~---~~~~~v~~~~~s-dg~~l~~  298 (582)
T 3o4h_A          269 SAVFID--G-ERVE---APQGNHGRVVLW-RGKLVTS  298 (582)
T ss_dssp             EEEEET--T-EEEC---CCSSEEEEEEEE-TTEEEEE
T ss_pred             EEEEEE--C-Ceec---cCCCceEEEEec-CCEEEEE
Confidence            999999  5 3332   344678889999 7765543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.8e-20  Score=177.00  Aligned_cols=229  Identities=10%  Similarity=-0.017  Sum_probs=152.7

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...++.+++++++.++++|+.++ ++||+.........          .+       .....+...       .....+.
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~----------~~-------~~~~~~~~~-------~~~~~~~   90 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK----------PG-------DDPNKIVDK-------VQGLLVP   90 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC----------TT-------CCTTCEEEC-------CCCEEEC
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc----------cc-------cCccccccc-------Ccccccc
Confidence            45689999999999999999887 99998653221000          00       000000000       0011223


Q ss_pred             ccCcEEEEEEEecCCCCEEE----EeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          112 IEEKINRVRWCAAPNGSMFI----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~----s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                      +...|.+++|  ++++++|+    +++.|+.|++||+.++.....   ....                            
T Consensus        91 ~~~~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~---~~~~----------------------------  137 (434)
T 2oit_A           91 MKFPIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK---QQKR----------------------------  137 (434)
T ss_dssp             CSSCEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC---SSCC----------------------------
T ss_pred             CCCcccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCc---CCcc----------------------------
Confidence            3478999999  78999999    788999999999876510000   0000                            


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                        ....+.. +.+|...|.+++|+|+ +.+|+++ .|+.|++||++. +.....       ..+
T Consensus       138 ------------------~~~~~~~-~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-~~~~~~-------~~~  190 (434)
T 2oit_A          138 ------------------PFAYHKL-LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-TVKVCA-------TLP  190 (434)
T ss_dssp             ------------------CSEEEEC-CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS-SEEEEE-------EEC
T ss_pred             ------------------eeeeeec-cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC-Ccceee-------ccC
Confidence                              0000111 2678999999999997 7899998 999999999984 333321       345


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      |...|.+++|+|+| ++|++|+.||.|++||++ ++..    ..+..+.      ..-..|...|.+++|++++.++++.
T Consensus       191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~------~~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPP------FYESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             GGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEE----EEECCCT------TCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cccc----ccccCCc------ccCCCCceeEEEEEEecCceEEEEE
Confidence            88899999999999 999999999999999998 3221    1121100      0001244579999999999888754


Q ss_pred             e--cC------cEEEEeccC
Q 012721          346 D--YM------NLKLWDIRM  357 (457)
Q Consensus       346 ~--~~------~i~~wd~~~  357 (457)
                      +  +|      .+++|+++.
T Consensus       259 ~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          259 AAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EETTCCSSSCCEEEEEECCC
T ss_pred             ccCCCccCCCCceEEEEecc
Confidence            3  22      389999975

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1.1e-20  Score=190.73  Aligned_cols=236  Identities=8%  Similarity=0.007  Sum_probs=162.7

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|.+++|  +++ ..++.+ .++.|++||+.+++....                                         
T Consensus        82 ~~v~~~~~--spd-~~~~~~-~~~~i~~~d~~~~~~~~l-----------------------------------------  116 (706)
T 2z3z_A           82 FPSFRTLD--AGR-GLVVLF-TQGGLVGFDMLARKVTYL-----------------------------------------  116 (706)
T ss_dssp             CCCEEEEE--TTT-TEEEEE-ETTEEEEEETTTTEEEEE-----------------------------------------
T ss_pred             cCceeEEE--CCC-CeEEEE-ECCEEEEEECCCCceEEc-----------------------------------------
Confidence            46899999  788 566555 459999999988765433                                         


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCC----cceeeeeecCCCc-------
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS----DQCFNIVDMKPSN-------  262 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~-------  262 (457)
                                           ..+...+.+++|+|||+.|+++.|+.|++||+...    ++...+.......       
T Consensus       117 ---------------------~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  175 (706)
T 2z3z_A          117 ---------------------FDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV  175 (706)
T ss_dssp             ---------------------ECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred             ---------------------cCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence                                 23445678899999999999998899999999831    4444331100000       


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEc---------------------------------cCCeEEEEEccCCeeecccccc
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSS---------------------------------SRGFVRLVDMRQSALCDHSARI  309 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~---------------------------------~dg~i~lwd~~~~~~~~~~~~~  309 (457)
                      .+.+...+.+++|+||| ++|++++                                 .+..|.+||+.+++..    .+
T Consensus       176 ~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~----~~  250 (706)
T 2z3z_A          176 HQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV----YL  250 (706)
T ss_dssp             GGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE----EC
T ss_pred             hhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE----ee
Confidence            00011225789999999 8888887                                 4467999999887532    11


Q ss_pred             ccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC-----cEEEEeccCCCCceeEeeec-c-ccccccccccCC
Q 012721          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM-----NLKLWDIRMDSTPVATFKIH-E-HLRPKLCDLYNN  381 (457)
Q Consensus       310 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~-----~i~~wd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~  381 (457)
                      ...           ..|...+.+++|+|||++|++++ ++     .|++||+.+ ++....+... . ..+.        
T Consensus       251 ~~~-----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~~--------  310 (706)
T 2z3z_A          251 QTG-----------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKHYVE--------  310 (706)
T ss_dssp             CCC-----------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSSCCC--------
T ss_pred             ccC-----------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCCeEC--------
Confidence            111           12456799999999999988754 33     899999975 5333333221 1 1110        


Q ss_pred             CCccccceEEEcC--CCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCccee-eeeccCCcceec
Q 012721          382 DSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-PILQAAPRARRS  444 (457)
Q Consensus       382 ~~~~~v~~~~~s~--d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~~~  444 (457)
                          .+..++|+|  ||++|++++.|+.++||.+.........+..+...+.. ++|+|++.....
T Consensus       311 ----~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~  372 (706)
T 2z3z_A          311 ----PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYF  372 (706)
T ss_dssp             ----CCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEE
T ss_pred             ----ccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEE
Confidence                014689999  99999999999999999887322566677778888876 799999976654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=1.3e-19  Score=165.61  Aligned_cols=250  Identities=11%  Similarity=0.060  Sum_probs=172.6

Q ss_pred             CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec-cCCccccccccccccC-cEEEEEEE
Q 012721           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEE-KINRVRWC  122 (457)
Q Consensus        45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~V~~v~~~  122 (457)
                      ++|++++.++.|.+||..+++.                           +..+. ++.            . .+..++| 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~------------~~~~~~~~~-   41 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV---------------------------DKVITIADA------------GPTPMVPMV-   41 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE---------------------------EEEEECTTC------------TTCCCCEEE-
T ss_pred             cEEEEcCCCCeEEEEECCCCcE---------------------------EEEEEcCCC------------CCCccceEE-
Confidence            5789999999999999987653                           22232 121            1 3778999 


Q ss_pred             ecCCCCEEE-EeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEec
Q 012721          123 AAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV  201 (457)
Q Consensus       123 ~s~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  201 (457)
                       +++++.++ ++..++.|.+||+.+++....+.....                                           
T Consensus        42 -s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------------------------------   77 (337)
T 1pby_B           42 -APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP-------------------------------------------   77 (337)
T ss_dssp             -CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT-------------------------------------------
T ss_pred             -cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc-------------------------------------------
Confidence             78887654 556688999999988876544321100                                           


Q ss_pred             cCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-------------CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          202 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       202 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                   ..|...+..++|+|++++++++             .++.|.+||+. .++....+.        ...
T Consensus        78 -------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~--------~~~  135 (337)
T 1pby_B           78 -------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAFE--------APR  135 (337)
T ss_dssp             -------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEEE--------CCS
T ss_pred             -------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC-CCcEEEEEe--------CCC
Confidence                         0122356689999999988877             36999999998 555554432        124


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccc------cccCc-----------------------
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA------ESHGS-----------------------  319 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~------~~~~~-----------------------  319 (457)
                      .+.+++|+|++ ++|+++  ++.|.+||+.+++....    +....      ..+..                       
T Consensus       136 ~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  208 (337)
T 1pby_B          136 QITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVED----KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKD  208 (337)
T ss_dssp             SCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEE----ECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred             CcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeee----eeccccCCCceeCCCccEEeeeccCCCceeeeeeccccc
Confidence            46788999999 777776  68899999998765411    10000      00000                       


Q ss_pred             ------------------------ccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccc
Q 012721          320 ------------------------KSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL  375 (457)
Q Consensus       320 ------------------------~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~  375 (457)
                                              ...+..+...+.+++|+|+|++++++ ++.|++||+.. ++.+..+..+...    
T Consensus       209 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~----  282 (337)
T 1pby_B          209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY----  282 (337)
T ss_dssp             SCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----
T ss_pred             cccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCce----
Confidence                                    00122333456789999999999988 69999999975 6666666544332    


Q ss_pred             ccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                                  .+++|+||+++|++++.++.|++||+.++ +....+..+
T Consensus       283 ------------~~~~~s~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~~~  320 (337)
T 1pby_B          283 ------------YSVNVSTDGSTVWLGGALGDLAAYDAETL-EKKGQVDLP  320 (337)
T ss_dssp             ------------CEEEECTTSCEEEEESBSSEEEEEETTTC-CEEEEEECG
T ss_pred             ------------eeEEECCCCCEEEEEcCCCcEEEEECcCC-cEEEEEEcC
Confidence                        58999999999999999999999999998 555555544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=6.1e-19  Score=163.11  Aligned_cols=289  Identities=11%  Similarity=0.046  Sum_probs=174.6

Q ss_pred             cCCceEEEEECCCCCEEEEEeCC----CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRG----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      +...+..++|+|||++|++++.+    +.|.+|+++...-                       ..+.+.....+.     
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-----------------------~~~~~~~~~~~~-----   99 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-----------------------TLHLLNTQKTMG-----   99 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-----------------------EEEEEEEEECSS-----
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-----------------------cEEEeeEeccCC-----
Confidence            56778889999999999998875    7999999876311                       111233333333     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                             .....+++    +++++++++ .++.|.+|++...........                              
T Consensus       100 -------~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~------------------------------  138 (361)
T 3scy_A          100 -------ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASD------------------------------  138 (361)
T ss_dssp             -------SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE------------------------------
T ss_pred             -------CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccce------------------------------
Confidence                   34566665    667777765 688999999875422110000                              


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcc----e-eeee-e
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ----C-FNIV-D  257 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~----~-~~~~-~  257 (457)
                                  ........ ...    ...+...+.+++|+|+|++++++  .++.|.+|++.....    . +... .
T Consensus       139 ------------~~~~~g~~-~~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          139 ------------VIEFKGSG-PDK----ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             ------------EEECCCCC-SCT----TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             ------------eEEccCCC-CCc----cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence                        00000000 000    01234457899999999976654  689999999874331    1 1100 0


Q ss_pred             cCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (457)
Q Consensus       258 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  336 (457)
                      .. .....+...+..++|+|+| +++++++ .++.|.+||+.+++...  ...+..          ...+......++|+
T Consensus       202 ~~-~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~----------~~~~~~~~~~i~~s  267 (361)
T 3scy_A          202 PE-AFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA----------DTVNAQGSGDIHLS  267 (361)
T ss_dssp             EE-EEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES----------CSSCCCCEEEEEEC
T ss_pred             cc-ceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec----------CCCCCCCcccEEEC
Confidence            00 0012234557899999999 7666655 78999999998764321  011111          11122456899999


Q ss_pred             cCCCeEEEEe---cCcEEEEeccCC-CC--ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEE
Q 012721          337 NDGQHLLSRD---YMNLKLWDIRMD-ST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLR  409 (457)
Q Consensus       337 ~~g~~l~s~~---~~~i~~wd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~  409 (457)
                      |||++|+++.   ++.|.+|++... ++  .+..+.. ....               ..++|+|||++|++++ .++.|.
T Consensus       268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~---------------~~~~~spdg~~l~~~~~~~~~v~  331 (361)
T 3scy_A          268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHP---------------RNFIITPNGKYLLVACRDTNVIQ  331 (361)
T ss_dssp             TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCC---------------CEEEECTTSCEEEEEETTTTEEE
T ss_pred             CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCC---------------ceEEECCCCCEEEEEECCCCCEE
Confidence            9999987643   378999999631 33  2223332 1111               5899999999998888 578999


Q ss_pred             EEecC--CCCceeeEE-ecCCCcceeeeec
Q 012721          410 IFSHG--VGSAGGITV-EAGKNENRKPILQ  436 (457)
Q Consensus       410 iw~~~--~~~~~~~~~-~~~~~~v~~~~~~  436 (457)
                      +|+++  ++ +...+. ..+...+.++.|.
T Consensus       332 v~~~d~~~g-~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          332 IFERDQATG-LLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEECTTTC-CEEECSCCEECSSEEEEEEE
T ss_pred             EEEEECCCC-cEeecceeeeCCCCeEEEEc
Confidence            96554  56 222222 2344567777775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=5.7e-20  Score=169.02  Aligned_cols=261  Identities=9%  Similarity=0.054  Sum_probs=173.9

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcE
Q 012721           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (457)
Q Consensus        37 ~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V  116 (457)
                      .+++++++.++++++.++.|.+||+.+++.                           +..+..+..           ..+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~-----------~~~   45 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------YKSCVMPDK-----------FGP   45 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSSC-----------CSS
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------------EEEEecCCC-----------CCC
Confidence            456888999999999999999999987653                           223332210           246


Q ss_pred             EEEEEEecCCCCEEE-EeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721          117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (457)
Q Consensus       117 ~~v~~~~s~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (457)
                      ..++|  ++++++++ +...++.|.+||+.+++...........                                    
T Consensus        46 ~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~------------------------------------   87 (349)
T 1jmx_B           46 GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP------------------------------------   87 (349)
T ss_dssp             CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST------------------------------------
T ss_pred             ceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc------------------------------------
Confidence            78899  78888655 4557899999999888765443211000                                    


Q ss_pred             eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC------------CeEEEEEcCCCcceeeeeecCCCc
Q 012721          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------------LRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d------------~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                                         ......+..++|+|+|++++++ .+            +.|.+||+. .++....+.     
T Consensus        88 -------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~-----  142 (349)
T 1jmx_B           88 -------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGLEAKPVR-----  142 (349)
T ss_dssp             -------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGGGBCCSE-----
T ss_pred             -------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECC-Cccccceee-----
Confidence                               0002246789999999999988 54            999999998 332222110     


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccc-ccc--------------Cc--------
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESH--------------GS--------  319 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~-~~~--------------~~--------  319 (457)
                      ...+...+.+++|+|+| + +++++.  .|.+||+.+++...    .+.... ..+              ..        
T Consensus       143 ~~~~~~~~~~~~~s~dg-~-l~~~~~--~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (349)
T 1jmx_B          143 TFPMPRQVYLMRAADDG-S-LYVAGP--DIYKMDVKTGKYTV----ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY  214 (349)
T ss_dssp             EEECCSSCCCEEECTTS-C-EEEESS--SEEEECTTTCCEEE----EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             eccCCCcccceeECCCC-c-EEEccC--cEEEEeCCCCceec----cccccccCCccccCccceeeecCCCcceeEEeee
Confidence            11123457889999999 7 444443  49999998876432    111100 000              00        


Q ss_pred             --------------------------------ccceeccccceEEEEEcc-CCCeEEEEecCcEEEEeccCCCCceeEee
Q 012721          320 --------------------------------KSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFK  366 (457)
Q Consensus       320 --------------------------------~~~~~~h~~~v~~~~~s~-~g~~l~s~~~~~i~~wd~~~~~~~~~~~~  366 (457)
                                                      ...+..+...+..++|+| +|++++++ ++.|.+||+.+ ++.+..+.
T Consensus       215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~  292 (349)
T 1jmx_B          215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAAN  292 (349)
T ss_dssp             EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEE
T ss_pred             eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEc
Confidence                                            000011223567889999 99999988 89999999975 66666665


Q ss_pred             eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      .....                ..++|+||+++|++++.++.|++||+.++ +....+..
T Consensus       293 ~~~~~----------------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~~~  334 (349)
T 1jmx_B          293 LDHTY----------------YCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIKL  334 (349)
T ss_dssp             CSSCC----------------CEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEEC
T ss_pred             CCCCc----------------cceEECCCCCEEEEecCCCeEEEEecccc-ceeeeeec
Confidence            43322                58999999999988888999999999988 45555543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=6.9e-20  Score=192.49  Aligned_cols=277  Identities=10%  Similarity=0.065  Sum_probs=191.8

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|...+.++.|+++ .++++++.++.+.||.++....                          ....+..|.       
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--------------------------~~~~l~~~~-------  245 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--------------------------DLRKHTSFT-------  245 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--------------------------SCEECCCCC-------
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--------------------------cceEecCCC-------
Confidence            358889999999988 6777888899999998764221                          112333343       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeec----------CCCceeeeeeccccccccccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD----------HFPFVSSENTLLAEKNFMNEHN  178 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  178 (457)
                            .+..++|  +++|+.|+++ .++.|.+|++...... .+...          ....+.+++|++++|..+..  
T Consensus       246 ------~~~~~~~--SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~--  313 (1045)
T 1k32_A          246 ------DYYPRHL--NTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF--  313 (1045)
T ss_dssp             ------SSCEEEE--EESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE--
T ss_pred             ------CcceeeE--cCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEE--
Confidence                  2456688  6789888887 4899999998544333 21110          01124445554122221111  


Q ss_pred             CCCceeccCCccccccceEEEeccCccccccceeeccCCCC-CeeEEEeCCCCCEEEEe-CCCeEE-EEEcCCCcceeee
Q 012721          179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNI  255 (457)
Q Consensus       179 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~-~d~~i~-iwd~~~~~~~~~~  255 (457)
                                  ...+.+.+|+.....   . ..+ ..|.. .+..++|+ +|+.|+++ .+..+. +||+. .+.... 
T Consensus       314 ------------~~~~~i~~~~~~~~~---~-~~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~~~~-  373 (1045)
T 1k32_A          314 ------------VSRGQAFIQDVSGTY---V-LKV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGKAEK-  373 (1045)
T ss_dssp             ------------EETTEEEEECTTSSB---E-EEC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCCEEE-
T ss_pred             ------------EEcCEEEEEcCCCCc---e-EEc-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCCceE-
Confidence                        124467778775432   1 112 45666 89999999 99999998 888888 99987 444332 


Q ss_pred             eecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (457)
Q Consensus       256 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  335 (457)
                             +.+|...+..++|+|+| ++|++++.++.|++||+.+++..    .+.             .+|...+.+++|
T Consensus       374 -------l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~-------------~~~~~~v~~~~~  428 (1045)
T 1k32_A          374 -------FEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIE-------------RSREAMITDFTI  428 (1045)
T ss_dssp             -------CCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEE-------------ECSSSCCCCEEE
T ss_pred             -------ecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceE----Eec-------------cCCCCCccceEE
Confidence                   33677889999999999 99999999999999999887543    222             235567899999


Q ss_pred             ccCCCeEEEEec-C----------cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721          336 ANDGQHLLSRDY-M----------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (457)
Q Consensus       336 s~~g~~l~s~~~-~----------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  404 (457)
                      +|||++|++++. +          .|++||+.. ++ ...+..|....               ..++|+|||++|++++.
T Consensus       429 SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~---------------~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          429 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSHD---------------YAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBE---------------EEEEECTTSCEEEEEES
T ss_pred             CCCCCeEEEEecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCccc---------------CCceEcCCCCEEEEEec
Confidence            999999987643 3          899999975 44 55555554432               57899999999999998


Q ss_pred             CCcEEEEec
Q 012721          405 SNLLRIFSH  413 (457)
Q Consensus       405 dg~i~iw~~  413 (457)
                      ++...+|+.
T Consensus       492 ~~~~~~~~~  500 (1045)
T 1k32_A          492 RSLDPSPDR  500 (1045)
T ss_dssp             CCCCCEECS
T ss_pred             ccCCcCcch
Confidence            877777764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=2e-18  Score=158.19  Aligned_cols=258  Identities=12%  Similarity=0.156  Sum_probs=160.1

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCC-CeEEEEEec--CCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRG-GRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      +.|...+.+++|+|+|++|++++.+ +.|.+|+++  ++..                         +.+..+..+     
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~~-----   83 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-------------------------TFAAESALP-----   83 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------------------------EEEEEEECS-----
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------------------------eeccccccC-----
Confidence            4577889999999999999888876 899999997  3332                         122223222     


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEEeccccee-EEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                              ..+..++|  +++++++++++ .++.|.+|++..+... ..........+.+++|.+....++...      
T Consensus        84 --------~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~------  147 (343)
T 1ri6_A           84 --------GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA------  147 (343)
T ss_dssp             --------SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE------
T ss_pred             --------CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEec------
Confidence                    35788999  78999887766 4889999999533221 122222223344444443322222111      


Q ss_pred             eccCCccccccceEEEeccCccccccce--eeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCC-Ccce--eeee
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEI-SDQC--FNIV  256 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~-~~~~--~~~~  256 (457)
                             ..++.+.+|++..........  .........+..++|+|+++++++ + .++.|.+|+++. .+..  ...+
T Consensus       148 -------~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~  220 (343)
T 1ri6_A          148 -------LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL  220 (343)
T ss_dssp             -------GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             -------CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence                   124579999987522222211  221234457889999999997654 5 899999999963 2222  2221


Q ss_pred             ecCCCcccCCCCceEEEEEecCCccEEE-EEccCCeEEEEEccC--CeeeccccccccccccccCcccceeccccceEEE
Q 012721          257 DMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (457)
Q Consensus       257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  333 (457)
                      ...+.. ......+..++|+|++ ++|+ ++..++.|.+||+..  +...  ....+.             .+ ..+..+
T Consensus       221 ~~~~~~-~~~~~~~~~i~~s~dg-~~l~v~~~~~~~i~v~d~~~~~~~~~--~~~~~~-------------~~-~~~~~~  282 (343)
T 1ri6_A          221 DMMPEN-FSDTRWAADIHITPDG-RHLYACDRTASLITVFSVSEDGSVLS--KEGFQP-------------TE-TQPRGF  282 (343)
T ss_dssp             ECSCTT-CCSCCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCCEE--EEEEEE-------------CS-SSCCCE
T ss_pred             cccCcc-ccccCCccceEECCCC-CEEEEEecCCCEEEEEEEcCCCCceE--Eeeeec-------------CC-CccceE
Confidence            111000 0113467789999999 6555 566899999999983  2111  011111             11 237889


Q ss_pred             EEccCCCeEEEEe-c-CcEEEEeccC
Q 012721          334 KFANDGQHLLSRD-Y-MNLKLWDIRM  357 (457)
Q Consensus       334 ~~s~~g~~l~s~~-~-~~i~~wd~~~  357 (457)
                      +|+|+|++|++++ + +.|.+|+++.
T Consensus       283 ~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          283 NVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEcC
Confidence            9999999888775 3 9999997653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=1.8e-18  Score=158.94  Aligned_cols=245  Identities=11%  Similarity=0.066  Sum_probs=156.5

Q ss_pred             CcEEEEEEEecCCCCEEEEeeC---CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                      ..+..++|  +|+|+ +++++.   ++.|.+|++.++........                                   
T Consensus        40 ~~p~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-----------------------------------   81 (347)
T 3hfq_A           40 QNPTYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-----------------------------------   81 (347)
T ss_dssp             SCCCCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-----------------------------------
T ss_pred             CCcceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-----------------------------------
Confidence            45677999  78998 555543   68999999987654332110                                   


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCc----cc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN----MD  264 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~----~~  264 (457)
                                              ..+...+..++|+|++++|+++  .++.|.+|++...+....+.......    ..
T Consensus        82 ------------------------~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~  137 (347)
T 3hfq_A           82 ------------------------VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPE  137 (347)
T ss_dssp             ------------------------EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTT
T ss_pred             ------------------------ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcc
Confidence                                    2344567889999999987776  68999999996443322221110000    00


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEcc-CCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~  343 (457)
                      .....+.+++|+|+| +++++...++.|.+||+. .++....  ..+..            ........++|+|+|++|+
T Consensus       138 ~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~--~~~~~------------~~g~~p~~~~~spdg~~l~  202 (347)
T 3hfq_A          138 QDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQ--SVLTM------------EAGFGPRHLVFSPDGQYAF  202 (347)
T ss_dssp             CSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEE--EEEEC------------CTTCCEEEEEECTTSSEEE
T ss_pred             ccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEe--eeEEc------------CCCCCCceEEECCCCCEEE
Confidence            123458899999999 677777789999999998 4432110  00010            0113567899999999877


Q ss_pred             EEe-c-CcEEEEeccCC-CCc--eeEeeeccccccccccccCCCCccccceEEEcCCCcEEE-EEeCCCcEEEEecCCCC
Q 012721          344 SRD-Y-MNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       344 s~~-~-~~i~~wd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~iw~~~~~~  417 (457)
                      +++ . +.|.+|+++.. ++.  +..+.......         ........++|+|||++|+ +...++.|.+|++....
T Consensus       203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g  273 (347)
T 3hfq_A          203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY---------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG  273 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC---------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred             EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC---------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence            654 3 89999998742 222  11222111100         0000125799999999874 55668999999997331


Q ss_pred             --ceeeEEecCCCcceeeeeccCCcceec
Q 012721          418 --AGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       418 --~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                        .....+..+...+..++|+|++.....
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          274 HLTLIQQISTEGDFPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             CEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred             cEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence              334455666677899999999985544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=6.5e-20  Score=185.58  Aligned_cols=282  Identities=12%  Similarity=0.080  Sum_probs=176.6

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (457)
Q Consensus        36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (457)
                      .+++|+|+|++++++ .|++|++||+.+++..                           ..+.+|...         ...
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------------------~~~~~~~~~---------~~~   61 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------------------TILSNRTMK---------SVN   61 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------------------EEECHHHHH---------TTT
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------------------EEEcccccc---------ccc
Confidence            378999999766655 6899999999887632                           223333200         013


Q ss_pred             EEEEEEEecCCCCEEEEeeC---------CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          116 INRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       116 V~~v~~~~s~~~~~l~s~s~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                      |.+++|  +|||++|++++.         ++.|++||+.+++....                                  
T Consensus        62 ~~~~~~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~----------------------------------  105 (719)
T 1z68_A           62 ASNYGL--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG----------------------------------  105 (719)
T ss_dssp             CSEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS----------------------------------
T ss_pred             eeeEEE--CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc----------------------------------
Confidence            889999  899999998876         78999999988764110                                  


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCC--ccc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS--NMD  264 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~  264 (457)
                                                  ......+..++|+|||+.|+.+.++.|++||+. .+...++......  .+.
T Consensus       106 ----------------------------~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~-~g~~~~l~~~~~~~~v~~  156 (719)
T 1z68_A          106 ----------------------------NELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP-GDPPFQITFNGRENKIFN  156 (719)
T ss_dssp             ----------------------------SCCCSSBCCEEECSSTTCEEEEETTEEEEESST-TSCCEECCCCCBTTTEEE
T ss_pred             ----------------------------eecCcccccceECCCCCEEEEEECCeEEEEeCC-CCCcEEEecCCCcCCeEc
Confidence                                        001135778999999999999978899999998 4444433110000  011


Q ss_pred             CCCCc---------eEEEEEecCCccEEEEEccCC----------------------------------eEEEEEccCCe
Q 012721          265 DLTEV---------ITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMRQSA  301 (457)
Q Consensus       265 ~~~~~---------i~~v~~~p~~~~~l~~~~~dg----------------------------------~i~lwd~~~~~  301 (457)
                      ++...         ..+++|+||| +.|++++.|.                                  .|++||+.+++
T Consensus       157 g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~  235 (719)
T 1z68_A          157 GIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA  235 (719)
T ss_dssp             SSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred             ccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence            22211         1489999999 9999887552                                  78889988764


Q ss_pred             eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-----CcEEEEe----ccCCCCceeEe----eec
Q 012721          302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWD----IRMDSTPVATF----KIH  368 (457)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-----~~i~~wd----~~~~~~~~~~~----~~~  368 (457)
                      ... ...+..        ...+.+|...+..++|+||++++++..+     ..|.+||    +.+ ++....+    ..|
T Consensus       236 ~~~-~~~~~~--------~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~  305 (719)
T 1z68_A          236 YVG-PQEVPV--------PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESR  305 (719)
T ss_dssp             HHC-CEECCC--------CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECS
T ss_pred             ccc-eeEccC--------CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccC
Confidence            210 000000        0112346678999999999988777432     3488889    654 4443333    244


Q ss_pred             cccccccccccCCCCccccceEEEcCCCcEEEE--EeCCC--cEEEEecCCCCceeeEEecCCCcceeeeeccCCccee
Q 012721          369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  443 (457)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s--~~~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~  443 (457)
                      ...+...          ....+.|+|||+.|+.  ...+|  .|++|++.+++  ...+..+...+..+.++ ++....
T Consensus       306 ~~~~~~~----------~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~  371 (719)
T 1z68_A          306 TGWAGGF----------FVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLF  371 (719)
T ss_dssp             SSCSSSS----------SCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEE
T ss_pred             CceEccc----------cCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEE
Confidence            4432100          0016899999996554  44555  57777877663  34455555566666666 544433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=2.6e-18  Score=158.15  Aligned_cols=242  Identities=11%  Similarity=0.042  Sum_probs=166.5

Q ss_pred             cCCceEEEEECCCCCEEE-EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~la-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      ....+..++|+|+|++++ ++..++.|.+||..+++.                           +..+..+....   ..
T Consensus        87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~~~---~~  136 (353)
T 3vgz_A           87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV---------------------------KGRLVLDDRKR---TE  136 (353)
T ss_dssp             ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE---------------------------EEEEESCCCCC---CS
T ss_pred             cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee---------------------------EEEEecCCCcc---cc
Confidence            345678899999999555 455679999999987763                           22333222000   00


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEee--CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                      ......+.++.|  +++++++++++  .++.|.+||..+++....+                                  
T Consensus       137 ~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~----------------------------------  180 (353)
T 3vgz_A          137 EVRPLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIKLKTAI----------------------------------  180 (353)
T ss_dssp             SCCCCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTEEEEEE----------------------------------
T ss_pred             ccCCCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCceEEEe----------------------------------
Confidence            000012688999  68888777765  5788999999887655432                                  


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                 ..+...+.+++|+|+++.++++ .++.|.+||+. .++....+...   ..++
T Consensus       181 ---------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~---~~~~  229 (353)
T 3vgz_A          181 ---------------------------QNTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLL---DDGK  229 (353)
T ss_dssp             ---------------------------CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECC---CSSS
T ss_pred             ---------------------------cCCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcC---CCCC
Confidence                                       1133346788999999999998 99999999998 55555544321   1235


Q ss_pred             CCceEEEEEecCCccEEEEE-ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          267 TEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~-~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      ...+..++|+|++ +.++++ ..++.|.+||+.+++..    ..+..               .....++|+|+|++++.+
T Consensus       230 ~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~---------------~~~~~~~~s~dg~~l~v~  289 (353)
T 3vgz_A          230 EHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNIL----AKVAA---------------PESLAVLFNPARNEAYVT  289 (353)
T ss_dssp             CCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCEE----EEEEC---------------SSCCCEEEETTTTEEEEE
T ss_pred             CcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEEc---------------CCCceEEECCCCCEEEEE
Confidence            5678899999999 655554 45699999999887543    22222               112468999999977655


Q ss_pred             e--cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          346 D--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       346 ~--~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                      +  ++.|.+||..+ ++.+..+......                ..++|+|||++|+.+..++
T Consensus       290 ~~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          290 HRQAGKVSVIDAKS-YKVVKTFDTPTHP----------------NSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             ETTTTEEEEEETTT-TEEEEEEECCSEE----------------EEEEECTTSCEEEEEEECC
T ss_pred             ECCCCeEEEEECCC-CeEEEEEecCCCC----------------CeEEEcCCCCEEEEEEccc
Confidence            4  49999999975 6777666654432                5899999999887776654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=1.3e-18  Score=161.10  Aligned_cols=258  Identities=11%  Similarity=0.013  Sum_probs=164.5

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEec-CCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV-GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ..+..++|+|+|++|++++.+ .|.+|++. +++..                         .+.....+           
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------------------------~~~~~~~~-----------   82 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------------------------HEASHPIG-----------   82 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-------------------------EEEEEECC-----------
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-------------------------EeeEeecC-----------
Confidence            468899999999999999887 89999987 55421                         11111111           


Q ss_pred             ccCcEEEEEEEecCCCCE--EEEee-------------CCCeEEEEEec-ccceeEEEeecCCCceeeeeeccccccccc
Q 012721          112 IEEKINRVRWCAAPNGSM--FILST-------------NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~--l~s~s-------------~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (457)
                        +.+.+++|  +|+|++  ++++.             .++.+.+|++. +++.......                    
T Consensus        83 --g~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~--------------------  138 (365)
T 1jof_A           83 --GHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN--------------------  138 (365)
T ss_dssp             --SSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE--------------------
T ss_pred             --CCCccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee--------------------
Confidence              11334677  788884  44553             68899999987 3543322110                    


Q ss_pred             cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCccee
Q 012721          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF  253 (457)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~  253 (457)
                                                           +...+...+.+++|+|+|++++++  .++.|++||++..++..
T Consensus       139 -------------------------------------~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~  181 (365)
T 1jof_A          139 -------------------------------------YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE  181 (365)
T ss_dssp             -------------------------------------EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             -------------------------------------EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence                                                 001244578899999999988876  57899999997223222


Q ss_pred             eeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEcc--CCeeec--cccccccccccccCcccceecccc
Q 012721          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMR--QSALCD--HSARILRDAAESHGSKSFFTEIIA  328 (457)
Q Consensus       254 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~  328 (457)
                      .+...   ....|...+..++|+|+| +++++++ .++.|.+|++.  +++...  .....+..         .+.+|..
T Consensus       182 ~~~~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---------~~~g~~~  248 (365)
T 1jof_A          182 LVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP---------GIPDRDP  248 (365)
T ss_dssp             EEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT---------TCCCBCT
T ss_pred             EeeeE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC---------CcCCccc
Confidence            11100   011234668999999999 7777665 57899999875  343210  00111111         0112222


Q ss_pred             ------ceEEEE-EccCCCeEEEEec--C-----cEEEEeccCCCCceeE---eeeccccccccccccCCCCccccceEE
Q 012721          329 ------SISDIK-FANDGQHLLSRDY--M-----NLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECS  391 (457)
Q Consensus       329 ------~v~~~~-~s~~g~~l~s~~~--~-----~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~  391 (457)
                            .+..++ |+|||++|++++.  +     .|.+|++...++....   ...+....               ..++
T Consensus       249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---------------~~~a  313 (365)
T 1jof_A          249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---------------HSNA  313 (365)
T ss_dssp             TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---------------TCCC
T ss_pred             ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---------------ccce
Confidence                  578999 9999999886542  3     8999999633444321   22222111               4789


Q ss_pred             EcC---CCcEEEEEeCC-CcEEEEecCCC
Q 012721          392 VSG---DGLHFATGSYS-NLLRIFSHGVG  416 (457)
Q Consensus       392 ~s~---d~~~l~s~~~d-g~i~iw~~~~~  416 (457)
                      |+|   ||++|++++.+ +.|.+|+++..
T Consensus       314 ~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          314 VSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            999   89999998875 89999999765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=2.2e-19  Score=181.90  Aligned_cols=295  Identities=10%  Similarity=0.035  Sum_probs=179.9

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCC--ceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP--FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                      ..+.+++|  +++|+++++ +.|++|++||+.+++...........  .+.+++|++....++........     ....
T Consensus        17 ~~~~~~~~--spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~-----~~~~   88 (723)
T 1xfd_A           17 IHDPEAKW--ISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI-----YQHS   88 (723)
T ss_dssp             CCCCCCCB--SSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC-----SSSC
T ss_pred             ccccccEE--cCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccc-----eeec
Confidence            34677899  789987665 78999999999999876665432211  36677776654333332211000     0011


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCc--ccCCC--
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN--MDDLT--  267 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~--  267 (457)
                      ..+.+.+||+++... +.+... .+|...+..++|+|||+.|+.+.++.|++||+. .++..++.......  +.++.  
T Consensus        89 ~~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~g~~~~~~~~~~~~~~~~g~~~~  165 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDP-QSLDPP-EVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSDW  165 (723)
T ss_dssp             CCSEEEEEESSSCCC-EECCCT-TCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEECCCBTTTEEEEECCH
T ss_pred             ceeeEEEEECCCCce-EeccCC-ccccccccccEECCCCCEEEEEECCeEEEEECC-CCceEEEecCCCCCceECcccce
Confidence            235788999875432 122211 345556899999999999999955899999998 45555442110000  00011  


Q ss_pred             -------CceEEEEEecCCccEEEEEccCC----------------------------------eEEEEEccCCeeeccc
Q 012721          268 -------EVITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMRQSALCDHS  306 (457)
Q Consensus       268 -------~~i~~v~~~p~~~~~l~~~~~dg----------------------------------~i~lwd~~~~~~~~~~  306 (457)
                             ..+.+++|+||| +.|++++.|+                                  .|++||+.+++..   
T Consensus       166 v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~---  241 (723)
T 1xfd_A          166 LYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD---  241 (723)
T ss_dssp             HHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC---
T ss_pred             eEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee---
Confidence                   123789999999 8888887543                                  7888888776421   


Q ss_pred             cccccccccccCcccceeccccceEEEEEccCCCeEEEEe----c-CcEEEEeccCCCCceeEeeec-cccccccccccC
Q 012721          307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYN  380 (457)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~-~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~  380 (457)
                       ..+..+       ..+..+...+..++|+|||++|++..    . ..|++||+.+ ++....+..+ ...+...     
T Consensus       242 -~~l~~~-------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~-----  307 (723)
T 1xfd_A          242 -LEMMPP-------DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQ-----  307 (723)
T ss_dssp             -EECCCC-------CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCC-----
T ss_pred             -EEeeCC-------ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEecc-----
Confidence             111110       00122356789999999999987653    2 5799999975 5655554433 2221000     


Q ss_pred             CCCccccceEEEcCCCcEEEE--EeCCC------cEEEEec-CCCCc--eeeEEecCCCcce-eeeeccCCcceec
Q 012721          381 NDSIFDKFECSVSGDGLHFAT--GSYSN------LLRIFSH-GVGSA--GGITVEAGKNENR-KPILQAAPRARRS  444 (457)
Q Consensus       381 ~~~~~~v~~~~~s~d~~~l~s--~~~dg------~i~iw~~-~~~~~--~~~~~~~~~~~v~-~~~~~p~~~~~~~  444 (457)
                            ...++|+|||+.|+.  +..++      .|++||+ .++ .  ....+..+...+. .++|+|++....+
T Consensus       308 ------~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~l~~~~~~~~~~~~~spdg~~l~~  376 (723)
T 1xfd_A          308 ------NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS-SNDNIQSITSGDWDVTKILAYDEKGNKIYF  376 (723)
T ss_dssp             ------CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS-SSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred             ------CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC-CccceeEeecCCeEEEeeeEEcCCCCEEEE
Confidence                  026899999997775  45666      5777773 444 3  1333433334444 4689999987654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=2.2e-18  Score=160.95  Aligned_cols=264  Identities=13%  Similarity=0.132  Sum_probs=170.2

Q ss_pred             EEECCCCCEEEEEeC-CCe--EEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccC
Q 012721           38 IEFDKTGDYLAVGDR-GGR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (457)
Q Consensus        38 ~~~s~~~~~latg~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (457)
                      .+|||||++||.++. +|.  |.+||+.+++.                           .....++.            .
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~---------------------------~~lt~~~~------------~   81 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA---------------------------TQLTEGRG------------D   81 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE---------------------------EECCCSSC------------B
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce---------------------------EEeeeCCC------------C
Confidence            889999999998887 674  77778776653                           12233443            3


Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      .+..+.|  +|+++.|+.++.++.|++||+.+++...+...                                       
T Consensus        82 ~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~---------------------------------------  120 (388)
T 3pe7_A           82 NTFGGFL--SPDDDALFYVKDGRNLMRVDLATLEENVVYQV---------------------------------------  120 (388)
T ss_dssp             CSSSCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEEC---------------------------------------
T ss_pred             CccceEE--cCCCCEEEEEeCCCeEEEEECCCCcceeeeec---------------------------------------
Confidence            3445678  79999999999999999999998876544321                                       


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeE--EEeCCCCCEEEE----------------------e-CCCeEEEEEcCCC
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINS--ISNNSDCETFVS----------------------A-DDLRINLWNLEIS  249 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~--~~~~~~~~~l~~----------------------~-~d~~i~iwd~~~~  249 (457)
                                            +...+..  ..++|++..++.                      . .+..|++||+. .
T Consensus       121 ----------------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~  177 (388)
T 3pe7_A          121 ----------------------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK-T  177 (388)
T ss_dssp             ----------------------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT-T
T ss_pred             ----------------------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC-C
Confidence                                  1112222  234777777763                      2 44789999998 4


Q ss_pred             cceeeeeecCCCcccCCCCceEEEEEec-CCccEEEEEccC------CeEEEEEccCCeeeccccccccccccccCcccc
Q 012721          250 DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~d------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (457)
                      ++...+        ..+...+..++|+| +| +.|+....+      ..|.++|+..++..    .+... .        
T Consensus       178 g~~~~l--------~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~-~--------  235 (388)
T 3pe7_A          178 GESTVI--------LQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTH-A--------  235 (388)
T ss_dssp             CCEEEE--------EEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCC-C--------
T ss_pred             CceEEe--------ecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeC-C--------
Confidence            544433        33456789999999 98 878776653      36778887654321    11111 0        


Q ss_pred             eeccccceEEEEEccCCCeEEEEe--c-C---cEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcC
Q 012721          323 FTEIIASISDIKFANDGQHLLSRD--Y-M---NLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (457)
Q Consensus       323 ~~~h~~~v~~~~~s~~g~~l~s~~--~-~---~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  394 (457)
                         ....+..+.|+|||+.|+..+  + +   .|++||+.+ ++.  +..+.++.....            ......|+|
T Consensus       236 ---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~------------~~~~~~~sp  299 (388)
T 3pe7_A          236 ---EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS------------NYDGSLMVG  299 (388)
T ss_dssp             ---TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE------------CTTSSEEEE
T ss_pred             ---CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee------------cCCCCeEcc
Confidence               012477889999999887543  2 2   399999975 443  222222110000            002458999


Q ss_pred             CCcEEEEE---------eCCCcEEEEecCCCCceeeEEecCCC-----------cceeeeeccCCcceec
Q 012721          395 DGLHFATG---------SYSNLLRIFSHGVGSAGGITVEAGKN-----------ENRKPILQAAPRARRS  444 (457)
Q Consensus       395 d~~~l~s~---------~~dg~i~iw~~~~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~~~~  444 (457)
                      ||+.|+..         ..+..|++||+.++ + ...+..+..           .+..++|+||+....+
T Consensus       300 dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~  367 (388)
T 3pe7_A          300 DGSDAPVDVQDDSGYKIENDPFLYVFNMKNG-T-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF  367 (388)
T ss_dssp             EECCC------------CCCCEEEEEETTTT-E-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             CCCcceeEeeeccccccCCCCEEEEEeccCC-c-eEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence            99988854         45668999999987 3 345555655           5788999999976665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=2.7e-18  Score=173.89  Aligned_cols=271  Identities=12%  Similarity=0.086  Sum_probs=170.0

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      ....+++|+|||++|+++  ||+|++|++.+++.                           ...+.+|...     .  .
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---------------------------~~~~~~~~~~-----~--~   60 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---------------------------SVFLENSTFD-----E--F   60 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---------------------------EEEECTTTTT-----T--C
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCce---------------------------EEEEechhhh-----h--h
Confidence            346689999999999986  89999999988763                           2345555511     0  0


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCC---------CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          113 EEKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                      ......+.|  ||||++|+.++.+         +.+.+||+.+++...+                               
T Consensus        61 ~~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l-------------------------------  107 (740)
T 4a5s_A           61 GHSINDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-------------------------------  107 (740)
T ss_dssp             CSCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------------------------------
T ss_pred             cccccceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc-------------------------------
Confidence            022345788  8999999998876         4556888877754321                               


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                                                     ..|...+...+|+|||+.||.+.|+.|++|++. .+...++.      .
T Consensus       108 -------------------------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~~~~~~lt------~  149 (740)
T 4a5s_A          108 -------------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRIT------W  149 (740)
T ss_dssp             -------------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECC------S
T ss_pred             -------------------------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECC-CCceEEEc------C
Confidence                                           455667999999999999999988999999998 44444331      1


Q ss_pred             cCCCCce-----------------EEEEEecCCccEEEEEccCC------------------------------------
Q 012721          264 DDLTEVI-----------------TSAEFHPIYCNLLAYSSSRG------------------------------------  290 (457)
Q Consensus       264 ~~~~~~i-----------------~~v~~~p~~~~~l~~~~~dg------------------------------------  290 (457)
                      .++...+                 ..+.|+||| +.|+.++.|.                                    
T Consensus       150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~  228 (740)
T 4a5s_A          150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV  228 (740)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred             CCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence            2222222                 348999999 8888876432                                    


Q ss_pred             eEEEEEccC---CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe----c-CcEEEEeccCCCC--
Q 012721          291 FVRLVDMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDST--  360 (457)
Q Consensus       291 ~i~lwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~-~~i~~wd~~~~~~--  360 (457)
                      .|++||+.+   ++...  ...+..       ...+.+|...+..++|+|||+.++...    + ..|++||+.+ ++  
T Consensus       229 ~l~v~d~~~~~~~~~~~--~~~l~~-------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~  298 (740)
T 4a5s_A          229 KFFVVNTDSLSSVTNAT--SIQITA-------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGR  298 (740)
T ss_dssp             EEEEEETTSCCSSSCCC--EEEECC-------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTE
T ss_pred             EEEEEECCCCCCCCcce--EEEecC-------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-Cccc
Confidence            244455444   31000  000000       000113667899999999999777542    1 4799999986 44  


Q ss_pred             --c--eeEe--eeccccccccccccCCCCccccceEEEcCCCcEEE-EEeC-CC--cEEEEecCCCCceeeEEecCCCcc
Q 012721          361 --P--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY-SN--LLRIFSHGVGSAGGITVEAGKNEN  430 (457)
Q Consensus       361 --~--~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~v  430 (457)
                        +  +..+  ..+...+..          .......|+|||+.|+ ..+. +|  .|++|++.++ .......+ ...+
T Consensus       299 ~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~-~~~~lT~g-~~~v  366 (740)
T 4a5s_A          299 WNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK-DCTFITKG-TWEV  366 (740)
T ss_dssp             EEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS-SCEESCCS-SSCE
T ss_pred             cceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC-ceEecccC-CEEE
Confidence              1  2222  334443310          0013688999999877 6654 33  5888898876 33333333 4444


Q ss_pred             eee
Q 012721          431 RKP  433 (457)
Q Consensus       431 ~~~  433 (457)
                      ..+
T Consensus       367 ~~~  369 (740)
T 4a5s_A          367 IGI  369 (740)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=1.1e-16  Score=148.04  Aligned_cols=241  Identities=9%  Similarity=0.059  Sum_probs=151.2

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCC----CeEEEEEecc--cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          114 EKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d----~~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                      ..+..++|  +|++++|++++.+    +.|.+|++..  ++...+...                                
T Consensus        50 ~~p~~l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~--------------------------------   95 (361)
T 3scy_A           50 ANPSYLIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ--------------------------------   95 (361)
T ss_dssp             SCCCSEEE--CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE--------------------------------
T ss_pred             CCCceEEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe--------------------------------
Confidence            55778999  7999999998875    7999999876  443322111                                


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeee---eecC---
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI---VDMK---  259 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~---~~~~---  259 (457)
                                                 ..+......+++  ++++|+++  .++.|.+|++...+.....   ....   
T Consensus        96 ---------------------------~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~  146 (361)
T 3scy_A           96 ---------------------------KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG  146 (361)
T ss_dssp             ---------------------------ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred             ---------------------------ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence                                       123345666777  77777665  7899999999743322111   0000   


Q ss_pred             CCcccCCCCceEEEEEecCCccEE-EEEccCCeEEEEEccCCee------e-cc-ccccccccccccCcccceeccccce
Q 012721          260 PSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSAL------C-DH-SARILRDAAESHGSKSFFTEIIASI  330 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~dg~i~lwd~~~~~~------~-~~-~~~~~~~~~~~~~~~~~~~~h~~~v  330 (457)
                      +.....+...+.+++|+|+| ++| ++...++.|.+|++.....      . .. ......            ..+....
T Consensus       147 ~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~  213 (361)
T 3scy_A          147 PDKERQTMPHLHCVRITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK------------VAPGSGP  213 (361)
T ss_dssp             SCTTTCSSCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE------------CCTTCCE
T ss_pred             CCccccCCCcceEEEECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee------------cCCCCCC
Confidence            00011223446889999999 755 5555689999999876431      1 00 000000            1113457


Q ss_pred             EEEEEccCCCeEEEEe--cCcEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-
Q 012721          331 SDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-  405 (457)
Q Consensus       331 ~~~~~s~~g~~l~s~~--~~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-  405 (457)
                      ..++|+|+|+++++++  ++.|.+|++.. ++.  +..+.......            .....++|+|||++|++++.+ 
T Consensus       214 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~------------~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          214 RHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNA------------QGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCC------------CCEEEEEECTTSSEEEEEECSS
T ss_pred             eEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCC------------CCcccEEECCCCCEEEEECCCC
Confidence            8899999999888765  39999999974 433  22222111100            011479999999999776654 


Q ss_pred             -CcEEEEecC--CCCc-eeeEEecCCCcceeeeeccCCcceec
Q 012721          406 -NLLRIFSHG--VGSA-GGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       406 -g~i~iw~~~--~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                       +.|.+|++.  +++. ....+.. ...+..++|+|++.....
T Consensus       281 ~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~  322 (361)
T 3scy_A          281 ADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLV  322 (361)
T ss_dssp             SCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEE
T ss_pred             CCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEE
Confidence             899999996  4421 2333344 567889999999985554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=3.6e-18  Score=172.74  Aligned_cols=281  Identities=9%  Similarity=0.023  Sum_probs=177.4

Q ss_pred             ceEEEEECCCCCEEEEEeC---------CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           34 IVSAIEFDKTGDYLAVGDR---------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      .|.+++|||||++||+++.         ++.|++||+.+++..                         ....+   .   
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~-------------------------~~~~l---~---  109 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV-------------------------RGNEL---P---  109 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-------------------------CSSCC---C---
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc-------------------------cceec---C---
Confidence            3899999999999999876         689999999887631                         00011   1   


Q ss_pred             cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                               ..+..++|  +|||+.|+.+. |+.|++|++.+++...+.......                         
T Consensus       110 ---------~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~-------------------------  152 (719)
T 1z68_A          110 ---------RPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN-------------------------  152 (719)
T ss_dssp             ---------SSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT-------------------------
T ss_pred             ---------cccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC-------------------------
Confidence                     34788999  89999999886 789999999887654321100000                         


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCC---------CCeeEEEeCCCCCEEEEe-CCC---------------
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHD---------FNINSISNNSDCETFVSA-DDL---------------  239 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~~~-~d~---------------  239 (457)
                                                .++ .++.         ....+++|+|||+.|+++ .|.               
T Consensus       153 --------------------------~v~-~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~  205 (719)
T 1z68_A          153 --------------------------KIF-NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQ  205 (719)
T ss_dssp             --------------------------TEE-ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSS
T ss_pred             --------------------------CeE-cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCC
Confidence                                      000 1222         123589999999999987 442               


Q ss_pred             -------------------eEEEEEcCCCccee---eeeecCCCcccCCCCceEEEEEecCCccEEEEEccC----CeEE
Q 012721          240 -------------------RINLWNLEISDQCF---NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVR  293 (457)
Q Consensus       240 -------------------~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d----g~i~  293 (457)
                                         .|++||+. .+...   .+.  .+..+.+|...+..++|+||+ +++++....    ..|.
T Consensus       206 ~~~~~~~~yp~~g~~~~~~~l~~~d~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~  281 (719)
T 1z68_A          206 YPRTINIPYPKAGAKNPVVRIFIIDTT-YPAYVGPQEVP--VPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLS  281 (719)
T ss_dssp             SCEEEEEECCBTTSCCCEEEEEEEESS-CHHHHCCEECC--CCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEE
T ss_pred             CccceeecCCCCCCCCCeeEEEEEECC-CCCccceeEcc--CCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEE
Confidence                               78899998 44432   210  112245688889999999998 877774432    3488


Q ss_pred             EEE----ccCCeeeccccccccccccccCcccceeccccceE-----EEEEccCCCeEEE--Ee-cC--cEEEEeccCCC
Q 012721          294 LVD----MRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-----DIKFANDGQHLLS--RD-YM--NLKLWDIRMDS  359 (457)
Q Consensus       294 lwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~~~~s~~g~~l~s--~~-~~--~i~~wd~~~~~  359 (457)
                      +||    +.+++..    .+...         ...+|...+.     .+.|+|||+.|+.  .. ++  .|.+||+.. +
T Consensus       282 ~~d~~~~~~~g~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~-~  347 (719)
T 1z68_A          282 ICDFREDWQTWDCP----KTQEH---------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV-E  347 (719)
T ss_dssp             EEEECSSSSSEECC----GGGEE---------EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS-T
T ss_pred             EEcccCCCCCCceE----EEEec---------ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC-C
Confidence            889    7665432    22210         0012334455     7899999997654  32 23  577777753 3


Q ss_pred             CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-----CcEEEEecCC--CCceeeEEe----cCCC
Q 012721          360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGV--GSAGGITVE----AGKN  428 (457)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g~i~iw~~~~--~~~~~~~~~----~~~~  428 (457)
                      + ...+..+...+               ..+.++ +++.|+..+.+     +.+++|.+..  +......+.    +|..
T Consensus       348 ~-~~~lt~~~~~v---------------~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~  410 (719)
T 1z68_A          348 N-AIQITSGKWEA---------------INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERC  410 (719)
T ss_dssp             T-CEECSCSSSCE---------------EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTB
T ss_pred             c-eEecccCceEE---------------EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCC
Confidence            3 44444333222               356666 77777766654     8899998765  311122222    2566


Q ss_pred             cceeeeeccCCcceec
Q 012721          429 ENRKPILQAAPRARRS  444 (457)
Q Consensus       429 ~v~~~~~~p~~~~~~~  444 (457)
                      .+..+.|+|++...+.
T Consensus       411 ~~~~~~~s~dg~~l~~  426 (719)
T 1z68_A          411 QYYTASFSDYAKYYAL  426 (719)
T ss_dssp             CBEEEEECGGGSSEEE
T ss_pred             ceEEEEECCCCCEEEE
Confidence            7788999998876554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=3.1e-16  Score=139.83  Aligned_cols=260  Identities=12%  Similarity=0.153  Sum_probs=176.8

Q ss_pred             hhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccc
Q 012721           13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR   92 (457)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (457)
                      .|.+...|+.  ......+...+.+++++++|+++++...++.|.+|+.+...                           
T Consensus        12 ~~~~~~~~g~--~g~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~---------------------------   62 (286)
T 1q7f_A           12 RMIYHCKFGE--FGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF---------------------------   62 (286)
T ss_dssp             EECEEEEECC--BSSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE---------------------------
T ss_pred             eeEEEEeccC--CCCCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE---------------------------
Confidence            3444444554  23334467789999999999999988889999999976322                           


Q ss_pred             eeeeec------cCCccccccccccccCcEEEEEEEecCCCCEEEEeeC-CCeEEEEEecccceeEEEeecCCCceeeee
Q 012721           93 YKTEFQ------SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (457)
Q Consensus        93 ~~~~~~------~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  165 (457)
                       +..+.      ++.            ..+..+++. .+++.++++... ++.|.+|+ .+++....+.           
T Consensus        63 -~~~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~-----------  116 (286)
T 1q7f_A           63 -KFQFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYN-QYGQFVRKFG-----------  116 (286)
T ss_dssp             -EEEECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEEC-TTSCEEEEEC-----------
T ss_pred             -EEEecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEEC-CCCcEEEEec-----------
Confidence             11221      122            457888884 256655555533 78999999 4444332211           


Q ss_pred             eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEE
Q 012721          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (457)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iw  244 (457)
                                                                       ..+...+..++++|+++++++. .++.|.+|
T Consensus       117 -------------------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  147 (286)
T 1q7f_A          117 -------------------------------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIF  147 (286)
T ss_dssp             -------------------------------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             -------------------------------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence                                                             1233467899999999988887 88999999


Q ss_pred             EcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (457)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (457)
                      |..  +.....+.     ...+...+..++++|+| +++++...++.|++||..... .    ..+..           .
T Consensus       148 ~~~--g~~~~~~~-----~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~-~----~~~~~-----------~  203 (286)
T 1q7f_A          148 DQN--GNVLHKFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY-L----RQIGG-----------E  203 (286)
T ss_dssp             CTT--SCEEEEEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE-E----EEESC-----------T
T ss_pred             cCC--CCEEEEeC-----CCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCCE-E----EEEcc-----------C
Confidence            976  33443321     12344568999999999 888888889999999975432 1    12211           1


Q ss_pred             ccccceEEEEEccCCCeEEEEec-C-cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721          325 EIIASISDIKFANDGQHLLSRDY-M-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (457)
Q Consensus       325 ~h~~~v~~~~~s~~g~~l~s~~~-~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  402 (457)
                      ++...+..++++++|+++++... + .|.+||..  ++.+..+..+.....             ...++++|+|+++++ 
T Consensus       204 g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~-------------~~~i~~~~~g~l~vs-  267 (286)
T 1q7f_A          204 GITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHAQ-------------CFDVALMDDGSVVLA-  267 (286)
T ss_dssp             TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCSC-------------EEEEEEETTTEEEEE-
T ss_pred             CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCCc-------------ceeEEECCCCcEEEE-
Confidence            11246789999999988887754 5 99999964  666766665433210             147999999987777 


Q ss_pred             eCCCcEEEEecCCC
Q 012721          403 SYSNLLRIFSHGVG  416 (457)
Q Consensus       403 ~~dg~i~iw~~~~~  416 (457)
                      +.|++|++|++...
T Consensus       268 ~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          268 SKDYRLYIYRYVQL  281 (286)
T ss_dssp             ETTTEEEEEECSCC
T ss_pred             CCCCeEEEEEcccc
Confidence            67999999998654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=8.6e-18  Score=165.67  Aligned_cols=217  Identities=8%  Similarity=-0.009  Sum_probs=152.0

Q ss_pred             CcEEEEEEEecCCCCEEEEeeC-CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                      .+|.+++|  ++||+.|++++. |++++||++.+++...+.                                       
T Consensus        22 ~~~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt---------------------------------------   60 (582)
T 3o4h_A           22 VEKYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETVKLN---------------------------------------   60 (582)
T ss_dssp             SCEEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------------
T ss_pred             cchheeec--CCCCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------------
Confidence            57999999  689999999886 999999998766543321                                       


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C---CCeEEEEEcCC--CcceeeeeecCCCcccCC
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEI--SDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~  266 (457)
                                            ..+...+..++|+|| ++++++ .   +....+|.++.  .+....+        ...
T Consensus        61 ----------------------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l--------~~~  109 (582)
T 3o4h_A           61 ----------------------REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL--------EAV  109 (582)
T ss_dssp             ----------------------SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC--------TTS
T ss_pred             ----------------------cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccc--------cCC
Confidence                                  223357889999999 777766 4   45566665543  2332222        111


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                       ..+...+|+|++...+++...++.+.+||+.+++..    .+...              ..  .+++|+|||++|++++
T Consensus       110 -~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~~--------------~~--~~~~~spDG~~la~~~  168 (582)
T 3o4h_A          110 -KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELARL--------------PG--FGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             -CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEEE--------------SS--CEEEEEEETTEEEEEE
T ss_pred             -CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----EeecC--------------CC--ceEEECCCCCEEEEEE
Confidence             123356888887444444444455569999887532    22222              12  7899999999999653


Q ss_pred             -c----CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC--cEEEEecCCCCce
Q 012721          347 -Y----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAG  419 (457)
Q Consensus       347 -~----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg--~i~iw~~~~~~~~  419 (457)
                       +    +.|++||+.. ++. ..+..+...+               ..++|||||++|+++..++  .|++||+.++ +.
T Consensus       169 ~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~~---------------~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~-~~  230 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSS-GGL-RVFDSGEGSF---------------SSASISPGMKVTAGLETAREARLVTVDPRDG-SV  230 (582)
T ss_dssp             EEETTEEEEEEEETTT-CCC-EEECCSSCEE---------------EEEEECTTSCEEEEEECSSCEEEEEECTTTC-CE
T ss_pred             EcCCCCeEEEEEcCCC-CCc-eEeecCCCcc---------------ccceECCCCCEEEEccCCCeeEEEEEcCCCC-cE
Confidence             3    5799999874 443 4566665543               5899999999999888888  8999999988 44


Q ss_pred             eeEEecCCCcceeee--------eccCCcce
Q 012721          420 GITVEAGKNENRKPI--------LQAAPRAR  442 (457)
Q Consensus       420 ~~~~~~~~~~v~~~~--------~~p~~~~~  442 (457)
                      . .+.+|...+..+.        |+||+...
T Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~  260 (582)
T 3o4h_A          231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLA  260 (582)
T ss_dssp             E-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred             E-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence            4 7788888899899        99999433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.76  E-value=1e-15  Score=141.53  Aligned_cols=245  Identities=9%  Similarity=-0.003  Sum_probs=152.3

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEec-ccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                      ..+..++|  ++++++|++++.+ .|.+|++. +++.......                                     
T Consensus        40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~-------------------------------------   79 (365)
T 1jof_A           40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH-------------------------------------   79 (365)
T ss_dssp             CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-------------------------------------
T ss_pred             CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-------------------------------------
Confidence            35778999  7899999998888 89999997 6654332111                                     


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCE--EEEe--------------CCCeEEEEEcCCCcceeeee
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET--FVSA--------------DDLRINLWNLEISDQCFNIV  256 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~--------------~d~~i~iwd~~~~~~~~~~~  256 (457)
                                            ..+ +...+++|+|+|++  ++++              .++.+.+|++...+.....+
T Consensus        80 ----------------------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~  136 (365)
T 1jof_A           80 ----------------------PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV  136 (365)
T ss_dssp             ----------------------ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE
T ss_pred             ----------------------ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE
Confidence                                  001 12445788999984  3333              47899999997444443322


Q ss_pred             ecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEcc-CCeeeccccccccccccccCcccceeccccceEEEE
Q 012721          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (457)
Q Consensus       257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  334 (457)
                      ...   ...+...+.+++|+|+| ++|++++ .++.|++||+. +++...  ...+..           ..|...+..++
T Consensus       137 ~~~---~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~--~~~~~~-----------~~~g~~p~~~~  199 (365)
T 1jof_A          137 QNY---EYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVEL--VGSVDA-----------PDPGDHPRWVA  199 (365)
T ss_dssp             EEE---ECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEE--EEEEEC-----------SSTTCCEEEEE
T ss_pred             eeE---EeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEE--eeeEec-----------CCCCCCCCEeE
Confidence            110   01244678999999999 7777665 46899999998 554321  011110           01235688999


Q ss_pred             EccCCCeEEEEec--CcEEEEeccC-CCCcee---EeeeccccccccccccCCC---CccccceEE-EcCCCcEEEEEeC
Q 012721          335 FANDGQHLLSRDY--MNLKLWDIRM-DSTPVA---TFKIHEHLRPKLCDLYNND---SIFDKFECS-VSGDGLHFATGSY  404 (457)
Q Consensus       335 ~s~~g~~l~s~~~--~~i~~wd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~v~~~~-~s~d~~~l~s~~~  404 (457)
                      |+|+|++|++++.  +.|.+|+++. .++...   .+.........     ...   ....+..++ |+|||++|++++.
T Consensus       200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPD-----RDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCC-----BCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCC-----cccccccccccccEEEECCCCCEEEEECC
Confidence            9999999987653  8999998753 133321   12111000000     000   000125799 9999999887664


Q ss_pred             CC------cEEEEecC-CCCceee---EEecCCCcceeeeecc---CCcceec
Q 012721          405 SN------LLRIFSHG-VGSAGGI---TVEAGKNENRKPILQA---APRARRS  444 (457)
Q Consensus       405 dg------~i~iw~~~-~~~~~~~---~~~~~~~~v~~~~~~p---~~~~~~~  444 (457)
                      +.      +|.+|++. ++ +...   ....+......++|+|   ++.....
T Consensus       275 ~~~~~~~~~i~v~~~~~~g-~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v  326 (365)
T 1jof_A          275 ANKFELQGYIAGFKLRDCG-SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAI  326 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTS-CEEEEEEEEECSSCCTTCCCEEECTTCTTEEEE
T ss_pred             CCCCCCCCeEEEEEECCCC-CEEEeeeeeecCCCCcccceecCCCcCCCEEEE
Confidence            32      89999996 55 3332   2334566678899999   7766555

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=2.1e-16  Score=158.26  Aligned_cols=183  Identities=10%  Similarity=0.023  Sum_probs=120.0

Q ss_pred             CCCCeeEEEeCCCCCEEEEe-CC----------CeEEEEEcCCC-----cceeeeeecCCCccc-CCCCceEEEEEecCC
Q 012721          217 HDFNINSISNNSDCETFVSA-DD----------LRINLWNLEIS-----DQCFNIVDMKPSNMD-DLTEVITSAEFHPIY  279 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~-~d----------~~i~iwd~~~~-----~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~~  279 (457)
                      |...+..++|+|||+.|+++ .+          ..|++||+...     +....        +. .+...+..++|+|||
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~SpDG  199 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE--------LSDDAHRFVTGPRLSPDG  199 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE--------SSCSCSSEECCCEECTTS
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE--------EEecCCCcccCceECCCC
Confidence            56678899999999999987 65          58999999831     33332        33 455678889999999


Q ss_pred             ccEEEEEccC--------CeEEEEEcc-CCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C-
Q 012721          280 CNLLAYSSSR--------GFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M-  348 (457)
Q Consensus       280 ~~~l~~~~~d--------g~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~-  348 (457)
                       +.|+.++.+        ..|.+||+. ++... ....+.             .+|...+..+.|+|||+++++++. + 
T Consensus       200 -~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~~~~l~-------------~~~~~~~~~~~~spdg~l~~~~~~~~~  264 (662)
T 3azo_A          200 -RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-DTRTLL-------------GGPEEAIAQAEWAPDGSLIVATDRTGW  264 (662)
T ss_dssp             -SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-EEEEEE-------------EETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred             -CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-ccEEeC-------------CCCCceEcceEECCCCeEEEEECCCCC
Confidence             888877754        379999998 45110 000111             123467899999999997766654 6 


Q ss_pred             -cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE--ecCCCCceeeEEec
Q 012721          349 -NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF--SHGVGSAGGITVEA  425 (457)
Q Consensus       349 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw--~~~~~~~~~~~~~~  425 (457)
                       .|.+||+.. ++.......+....       .+.-..++..++|+|+++++++++. +.++||  |+.++  ....+..
T Consensus       265 ~~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~--~~~~l~~  333 (662)
T 3azo_A          265 WNLHRVDPAT-GAATQLCRREEEFA-------GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG--ELVDAAG  333 (662)
T ss_dssp             CEEEEECTTT-CCEEESSCCSSBSS-------CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT--EEEECCS
T ss_pred             eEEEEEECCC-Cceeeccccccccc-------CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC--cEEEecC
Confidence             566666543 44332222222110       0011111257899999999999999 999999  54444  3566777


Q ss_pred             CCCcceee
Q 012721          426 GKNENRKP  433 (457)
Q Consensus       426 ~~~~v~~~  433 (457)
                      +...+..+
T Consensus       334 ~~~~~~~~  341 (662)
T 3azo_A          334 PWTEWAAT  341 (662)
T ss_dssp             SCCEEEEE
T ss_pred             CCCeEEEE
Confidence            77777766

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.75  E-value=4.3e-16  Score=142.21  Aligned_cols=229  Identities=13%  Similarity=0.056  Sum_probs=152.9

Q ss_pred             CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCcccc
Q 012721          128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  207 (457)
Q Consensus       128 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  207 (457)
                      +++++++.++.|.+||..+++....+.                                                     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~-----------------------------------------------------   28 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVIT-----------------------------------------------------   28 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEE-----------------------------------------------------
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEE-----------------------------------------------------
Confidence            478899999999999998886654432                                                     


Q ss_pred             ccceeeccCCCC-CeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721          208 RCQKVYPHAHDF-NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (457)
Q Consensus       208 ~~~~~~~~~h~~-~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~  284 (457)
                             .++.. .+..++|+|+++.+++ + .++.|.+||+. .++....+....  ...+...+.+++|+|+| +.|+
T Consensus        29 -------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg-~~l~   97 (337)
T 1pby_B           29 -------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLST--PEERVKSLFGAALSPDG-KTLA   97 (337)
T ss_dssp             -------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECCB--TTEEEECTTCEEECTTS-SEEE
T ss_pred             -------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC-CCCeEeeEEcCC--cccccccccceEECCCC-CEEE
Confidence                   12211 3678999999987654 5 78999999998 455554432210  00012256789999999 8888


Q ss_pred             EEc------------cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEE
Q 012721          285 YSS------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL  352 (457)
Q Consensus       285 ~~~------------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~  352 (457)
                      +++            .++.|.+||+.+++..    ..+..              ...+..++|+|+|++|+++ ++.|++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~-~~~i~~  158 (337)
T 1pby_B           98 IYESPVRLELTHFEVQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGL-GRDLHV  158 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEE-SSSEEE
T ss_pred             EEecccccccccccccCceEEEEECCCCcEE----EEEeC--------------CCCcceeEECCCCCEEEEe-CCeEEE
Confidence            775            5799999999887543    22221              2356788999999988887 589999


Q ss_pred             EeccCCCCceeEeeeccccccccc-----cc-----------------------------------cCCC----------
Q 012721          353 WDIRMDSTPVATFKIHEHLRPKLC-----DL-----------------------------------YNND----------  382 (457)
Q Consensus       353 wd~~~~~~~~~~~~~~~~~~~~~~-----~~-----------------------------------~~~~----------  382 (457)
                      ||+.. ++....+..+........     .+                                   ++..          
T Consensus       159 ~d~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  237 (337)
T 1pby_B          159 MDPEA-GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR  237 (337)
T ss_dssp             EETTT-TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred             EECCC-CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence            99975 555554443320000000     00                                   0000          


Q ss_pred             -CccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          383 -SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       383 -~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                       ....+..++|+||+++|+++  ++.|++||+.++ +....+.. ...+..++|+|++.....
T Consensus       238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~  296 (337)
T 1pby_B          238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPL-PHSYYSVNVSTDGSTVWL  296 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEEC-SSCCCEEEECTTSCEEEE
T ss_pred             CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecC-CCceeeEEECCCCCEEEE
Confidence             00012358999999999988  799999999988 44555543 356789999999985554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.75  E-value=3.5e-15  Score=137.40  Aligned_cols=270  Identities=9%  Similarity=0.046  Sum_probs=166.8

Q ss_pred             CCCEEEEEe------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcE
Q 012721           43 TGDYLAVGD------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (457)
Q Consensus        43 ~~~~latg~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V  116 (457)
                      +++++++..      .|+.|.+||..+++.                           +..+..+.            .+ 
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~---------------------------~~~i~~g~------------~p-   53 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF---------------------------LGMVPTAF------------NG-   53 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCE---------------------------EEEEECCE------------EE-
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeE---------------------------EEEecCCC------------CC-
Confidence            556666543      367999999877653                           23344333            33 


Q ss_pred             EEEEEEecCCCCEEEEee----------CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       117 ~~v~~~~s~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                       .++|  ++++++++++.          .++.|.+||..+++....+......                           
T Consensus        54 -~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~---------------------------  103 (361)
T 2oiz_A           54 -HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR---------------------------  103 (361)
T ss_dssp             -EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---------------------------
T ss_pred             -ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---------------------------
Confidence             7888  79999999876          3678999999887765544321100                           


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C--CCeEEEEEcCCCcceeee-eecCCCc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSN  262 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~  262 (457)
                                                  ..+......++++|+|++|+++ .  ++.|.+||+. .++.+.. +...   
T Consensus       104 ----------------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~~~---  151 (361)
T 2oiz_A          104 ----------------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA-KGDYVEDVTAAA---  151 (361)
T ss_dssp             ----------------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT-TTEEEEEEGGGT---
T ss_pred             ----------------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC-CCcEEEEEecCC---
Confidence                                        1123456689999999999887 3  6899999999 4554443 3211   


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC-Ceeeccc--ccccccccccc-------Cc-----------cc
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHS--ARILRDAAESH-------GS-----------KS  321 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~-~~~~~~~--~~~~~~~~~~~-------~~-----------~~  321 (457)
                            ....+.+.|++...+++.+.||.+.+|++.. ++.....  ...+.. ...+       ..           ..
T Consensus       152 ------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~v~  224 (361)
T 2oiz_A          152 ------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV-KDDPIFIAPALDKDKAHFVSYYGNVY  224 (361)
T ss_dssp             ------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT-TTSCBCSCCEECSSEEEEEBTTSEEE
T ss_pred             ------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC-CCCceEEEecccCCEEEEEeCCCeEE
Confidence                  1122345555434555556666666666543 2211000  000000 0000       00           00


Q ss_pred             -------------cee------cc----ccceEEEEEccCCCeEEEEe------------cCcEEEEeccCCCCceeEee
Q 012721          322 -------------FFT------EI----IASISDIKFANDGQHLLSRD------------YMNLKLWDIRMDSTPVATFK  366 (457)
Q Consensus       322 -------------~~~------~h----~~~v~~~~~s~~g~~l~s~~------------~~~i~~wd~~~~~~~~~~~~  366 (457)
                                   .+.      .+    ......++|+|+++.++.+.            .+.|.+||+.+ .+.+..+.
T Consensus       225 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~  303 (361)
T 2oiz_A          225 SADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIP  303 (361)
T ss_dssp             EEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEE
T ss_pred             EEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEe
Confidence                         000      00    01111268899988777542            14799999986 78888887


Q ss_pred             eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC-ceeeEEecCCCcceeeeeccCCc
Q 012721          367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGITVEAGKNENRKPILQAAPR  440 (457)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~  440 (457)
                      .+. .                ..++|+|||++|++++. +.|.+||..+++ +....+..+......++++|+|.
T Consensus       304 ~~~-p----------------~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          304 GRD-A----------------LSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CTT-C----------------CEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             cCC-e----------------eEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            766 3                58999999999998887 999999999872 23344456677778899999975

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=3.1e-16  Score=143.90  Aligned_cols=236  Identities=10%  Similarity=0.016  Sum_probs=152.0

Q ss_pred             cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccC
Q 012721          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (457)
Q Consensus       124 s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  203 (457)
                      ++++.++++++.++.|.+||..+++....+..                                                
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------------------------------------   39 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM------------------------------------------------   39 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEEC------------------------------------------------
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcEEEEEec------------------------------------------------
Confidence            56788899999999999999998876544321                                                


Q ss_pred             ccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCcc
Q 012721          204 SVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  281 (457)
Q Consensus       204 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~  281 (457)
                                  +....+..++|+|+++.++ ++ .++.|.+||+. .++....+..... -......+..++|+|+| +
T Consensus        40 ------------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~~~~~~~~~~~~-~~~~~~~~~~~~~spdg-~  104 (349)
T 1jmx_B           40 ------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKNTFHANLSSV-PGEVGRSMYSFAISPDG-K  104 (349)
T ss_dssp             ------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEESCCS-TTEEEECSSCEEECTTS-S
T ss_pred             ------------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-CCcEEEEEEcccc-cccccccccceEECCCC-C
Confidence                        1112466899999998665 45 78999999998 4555444321100 00002336789999999 8


Q ss_pred             EEEEEccC------------CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCc
Q 012721          282 LLAYSSSR------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  349 (457)
Q Consensus       282 ~l~~~~~d------------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~  349 (457)
                      +|++++.+            +.|.+||+.+++..    .....           ..+...+.+++|+|+|+ +++++ +.
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~-----------~~~~~~~~~~~~s~dg~-l~~~~-~~  167 (349)
T 1jmx_B          105 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRT-----------FPMPRQVYLMRAADDGS-LYVAG-PD  167 (349)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEE-----------EECCSSCCCEEECTTSC-EEEES-SS
T ss_pred             EEEEEcccccccccccccCCCeEEEEECCCcccc----ceeee-----------ccCCCcccceeECCCCc-EEEcc-Cc
Confidence            88888765            89999999875422    11111           11123578899999999 55443 45


Q ss_pred             EEEEeccCCCCceeEeeeccccccc--------------------c---ccccC---------------------CCC--
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPK--------------------L---CDLYN---------------------NDS--  383 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~--------------------~---~~~~~---------------------~~~--  383 (457)
                      |++||+.+ ++....+..+......                    .   ..+..                     ...  
T Consensus       168 i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  246 (349)
T 1jmx_B          168 IYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH  246 (349)
T ss_dssp             EEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred             EEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE
Confidence            99999975 6655555433200000                    0   00000                     000  


Q ss_pred             -------ccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          384 -------IFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       384 -------~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                             -.....++|+| |+++|+++  ++.|++||+.++ +....+.. ...+..++|+|++.....
T Consensus       247 ~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~  311 (349)
T 1jmx_B          247 TQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR-KLIKAANL-DHTYYCVAFDKKGDKLYL  311 (349)
T ss_dssp             EEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT-EEEEEEEC-SSCCCEEEECSSSSCEEE
T ss_pred             ecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC-eEEEEEcC-CCCccceEECCCCCEEEE
Confidence                   00124678899 99999988  889999999988 44455543 345678999999876554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=1.7e-16  Score=160.75  Aligned_cols=241  Identities=11%  Similarity=0.092  Sum_probs=150.4

Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      ...++.|  ++++.+++++  |++|++||+.+++...++.....                                    
T Consensus        18 ~~~~~~w--~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~------------------------------------   57 (740)
T 4a5s_A           18 KLYSLRW--ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF------------------------------------   57 (740)
T ss_dssp             CCCCEEE--CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT------------------------------------
T ss_pred             cccccEE--CCCCcEEEEc--CCcEEEEECCCCceEEEEechhh------------------------------------
Confidence            4567999  7899888876  99999999999876544321100                                    


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC---------CeEEEEEcCCCcceeeeeecCCCccc
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                          ..+......++|+|||++|+.+ .+         +.+++||+. .++...        +.
T Consensus        58 --------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~-~~~~~~--------l~  108 (740)
T 4a5s_A           58 --------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-KRQLIT--------EE  108 (740)
T ss_dssp             --------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEECC--------SS
T ss_pred             --------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC-CCcEEE--------cc
Confidence                                1112233458899999999988 54         667899998 555432        45


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc---------cceEEEEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII---------ASISDIKF  335 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~  335 (457)
                      .+...+..++|+||| +.||.+ .++.|++||+.+++..    ++...    ......+.++.         +....+.|
T Consensus       109 ~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~----~lt~~----g~~~~~~~g~~~~v~~ee~~~~~~~~~w  178 (740)
T 4a5s_A          109 RIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSY----RITWT----GKEDIIYNGITDWVYEEEVFSAYSALWW  178 (740)
T ss_dssp             CCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCE----ECCSC----CBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred             cCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceE----EEcCC----CCccceecCcccccccchhcCCCcceEE
Confidence            567789999999999 888887 5789999999887532    11110    00001122222         22345899


Q ss_pred             ccCCCeEEEEe-c-CcEE-----------------------------------EEeccC---CCC-ceeEeeeccccccc
Q 012721          336 ANDGQHLLSRD-Y-MNLK-----------------------------------LWDIRM---DST-PVATFKIHEHLRPK  374 (457)
Q Consensus       336 s~~g~~l~s~~-~-~~i~-----------------------------------~wd~~~---~~~-~~~~~~~~~~~~~~  374 (457)
                      ||||++||..+ | ..+.                                   +||+..   ... ....+.....    
T Consensus       179 SpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~----  254 (740)
T 4a5s_A          179 SPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS----  254 (740)
T ss_dssp             CTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH----
T ss_pred             CCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc----
Confidence            99999999763 2 4344                                   444432   100 1111111000    


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEeC----CCcEEEEecCCCC-------ceeeEEecCCCcce-----eeeeccC
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGS-------AGGITVEAGKNENR-----KPILQAA  438 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~----dg~i~iw~~~~~~-------~~~~~~~~~~~~v~-----~~~~~p~  438 (457)
                         +.  ....-+..++|+|||+.++....    +..|++||+.+++       .....-++|...+.     .+.|+||
T Consensus       255 ---~~--~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          255 ---ML--IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             ---HH--TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred             ---CC--CCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence               00  00011268899999997765543    3479999999984       11222266776665     7899999


Q ss_pred             Cccee
Q 012721          439 PRARR  443 (457)
Q Consensus       439 ~~~~~  443 (457)
                      +....
T Consensus       330 G~~l~  334 (740)
T 4a5s_A          330 GNSFY  334 (740)
T ss_dssp             SSEEE
T ss_pred             CCEEE
Confidence            98654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=3e-15  Score=136.22  Aligned_cols=260  Identities=11%  Similarity=0.074  Sum_probs=171.7

Q ss_pred             CCceEEEEECCCCCEEEEEeCC------------------------CeEEEEEecCCccCCCcccchhhhhhcccccccC
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRG------------------------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTS   87 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (457)
                      .+.|.+++++|+|+++++...+                        ++|.+||..+++.                     
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------   81 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------   81 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---------------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---------------------
Confidence            4689999999999999988777                        3688888766553                     


Q ss_pred             CCccceeeeec-cCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccc-eeEEEeecCCCceeeee
Q 012721           88 HPEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSEN  165 (457)
Q Consensus        88 ~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~  165 (457)
                            +..+. ++-            .....+++  +++|+++++...++.|++|+..... ....+......      
T Consensus        82 ------~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~------  135 (329)
T 3fvz_A           82 ------LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP------  135 (329)
T ss_dssp             ------EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC------
T ss_pred             ------EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC------
Confidence                  12222 222            46889999  7899888888889999999976542 22211100000      


Q ss_pred             eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe--CCCeEE
Q 012721          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA--DDLRIN  242 (457)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~--~d~~i~  242 (457)
                           +                                         ...++......++++| ++.++++.  .++.|+
T Consensus       136 -----g-----------------------------------------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A          136 -----G-----------------------------------------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             -----C-----------------------------------------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred             -----C-----------------------------------------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence                 0                                         0023445678999999 78888876  489999


Q ss_pred             EEEcCCCcceeeeeecCCC---cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCc
Q 012721          243 LWNLEISDQCFNIVDMKPS---NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS  319 (457)
Q Consensus       243 iwd~~~~~~~~~~~~~~~~---~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      +||..  +.....+.....   ...++......++++|++..++++...++.|++||..+++..    ..+..       
T Consensus       170 ~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~----~~~~~-------  236 (329)
T 3fvz_A          170 QFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV----REIKH-------  236 (329)
T ss_dssp             EECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EEECC-------
T ss_pred             EEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE----EEEec-------
Confidence            99955  444444311100   001233458999999983288888889999999999866543    22221       


Q ss_pred             ccceeccccceEEEEEccCCCeEEEE-------ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEE
Q 012721          320 KSFFTEIIASISDIKFANDGQHLLSR-------DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS  391 (457)
Q Consensus       320 ~~~~~~h~~~v~~~~~s~~g~~l~s~-------~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  391 (457)
                          ..+...+..++|+| +..+++.       .. ..|++||... ++.+..+.......            .....++
T Consensus       237 ----~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~------------~~p~~ia  298 (329)
T 3fvz_A          237 ----ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKHF------------DMPHDIV  298 (329)
T ss_dssp             ----TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSCC------------SSEEEEE
T ss_pred             ----cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCcc------------CCeeEEE
Confidence                12235678899999 4333332       22 5899999875 77777664211110            0115899


Q ss_pred             EcCCCcEEEEEeCCCcEEEEecCC
Q 012721          392 VSGDGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       392 ~s~d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      ++|+|.++++...+++|++|++..
T Consensus       299 ~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          299 ASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             ECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             ECCCCCEEEEECCCCEEEEEeCCc
Confidence            999998888888899999999864

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=7.2e-16  Score=144.15  Aligned_cols=298  Identities=11%  Similarity=0.030  Sum_probs=172.0

Q ss_pred             cCCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      |...+.+++|||||++||.....   ..|.+|++.+++..                            .+..+..     
T Consensus        34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----------------------------~l~~~~~-----   80 (396)
T 3c5m_A           34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----------------------------QLTEGKG-----   80 (396)
T ss_dssp             ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----------------------------ECCCSSC-----
T ss_pred             cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----------------------------EeecCCC-----
Confidence            33447889999999998876543   36778887766531                            1222220     


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCC-------
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-------  180 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  180 (457)
                            .....+.|  +|+|+.|+.++.++.|.+|++.+++...+......       +.+....++......       
T Consensus        81 ------~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~~~~g~~l~~~~~~~~~~~~~~  145 (396)
T 3c5m_A           81 ------DNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE-------WKGYGTWVANSDCTKLVGIEIL  145 (396)
T ss_dssp             ------BCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-------EEEEEEEEECTTSSEEEEEEEE
T ss_pred             ------CccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc-------cCCCCCEEEeccCCcccccccc
Confidence                  11223678  79999999999999999999998876655443221       111111111110000       


Q ss_pred             CceeccCCcc---------ccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CC------CeEEE
Q 012721          181 SFAHGYHLEW---------TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINL  243 (457)
Q Consensus       181 ~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d------~~i~i  243 (457)
                      ...+.+++..         .....+.+||+....   ....  ..+...+..+.|+| ++..|+.. .+      ..|.+
T Consensus       146 ~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~~--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (396)
T 3c5m_A          146 KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE---LEVI--HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL  220 (396)
T ss_dssp             GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC---EEEE--EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred             ccccCCCCcceeeeeeccCCCcceEEEEECCCCc---EEee--ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence            0123334432         123367788876422   2221  24566788999999 78877664 32      46888


Q ss_pred             EEcCCCcceeeeeecCCCcccCC-CCceEEEEEecCCccEEEEEccC-----CeEEEEEccCCeeecccccccccccccc
Q 012721          244 WNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESH  317 (457)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~~d-----g~i~lwd~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ||+. .+....+       .... ...+..++|+|+| +.|+.++.+     +.|.+||+.+++..    .+...     
T Consensus       221 ~d~~-~~~~~~l-------~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~-----  282 (396)
T 3c5m_A          221 VNED-GSNVRKI-------KEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENE----EVMVM-----  282 (396)
T ss_dssp             EETT-SCCCEES-------SCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEE----EEEEC-----
T ss_pred             EECC-CCceeEe-------eccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeE----EeeeC-----
Confidence            8887 3333222       1111 2357889999999 766666543     45999999876532    11111     


Q ss_pred             CcccceeccccceEEEEEcc-CCCeEEEEe-----------------cCcEEEEeccCCCCceeEeeecccccccccccc
Q 012721          318 GSKSFFTEIIASISDIKFAN-DGQHLLSRD-----------------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  379 (457)
Q Consensus       318 ~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~-----------------~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  379 (457)
                                .... +.|+| +|++++.+.                 +..|++||+.. ++. ..+..+......    +
T Consensus       283 ----------~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~----~  345 (396)
T 3c5m_A          283 ----------PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDV----L  345 (396)
T ss_dssp             ----------CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCC----B
T ss_pred             ----------CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCcccc----c
Confidence                      1123 88999 999888642                 27899999874 443 344444321000    0


Q ss_pred             CCCCccccceEEEcCCCcEEEEEeC-CCcEEEE--ecCCC
Q 012721          380 NNDSIFDKFECSVSGDGLHFATGSY-SNLLRIF--SHGVG  416 (457)
Q Consensus       380 ~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw--~~~~~  416 (457)
                      ..+....+..++|+|||+.|+.++. ++...||  ++.++
T Consensus       346 ~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          346 DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             cccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence            0000000146899999998887765 4554454  55555

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=5.6e-15  Score=134.79  Aligned_cols=272  Identities=13%  Similarity=0.080  Sum_probs=178.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...|.+++|++++..++..+.++.++.|...                              ....+..+.          
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~----------   44 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTITAE------------------------------PWLEISKKG----------   44 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEEECE------------------------------EEEEEESSC----------
T ss_pred             ccccceeeecCCccceeEEeecccCcccccc------------------------------eeEEEeccC----------
Confidence            3457889999998888777778889998321                              122344444          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        ..+.+++|  ++++.+++++..++.|.+||..+++.....                                      
T Consensus        45 --~~~~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~--------------------------------------   82 (333)
T 2dg1_A           45 --LQLEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF--------------------------------------   82 (333)
T ss_dssp             --CCEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE--------------------------------------
T ss_pred             --ccccCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe--------------------------------------
Confidence              55789999  688887778888999999998877654321                                      


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC----CeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                             ..+...+.+++++|+++++++. .+    +.|.+||.+ .+.....+.     ...+
T Consensus        83 -----------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~-~~~~~~~~~-----~~~~  133 (333)
T 2dg1_A           83 -----------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIE-----DLST  133 (333)
T ss_dssp             -----------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEEC-----SSSS
T ss_pred             -----------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC-CCEEEEEEc-----cCcc
Confidence                                   1234578999999999988887 65    699999988 443332221     0123


Q ss_pred             CCceEEEEEecCCccEEEEEcc------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          267 TEVITSAEFHPIYCNLLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                      ...+.+++++|+| +++++...      .+.|..||..+++..    ....              +...+..++|+|+|+
T Consensus       134 ~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~--------------~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          134 AYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQ--------------NISVANGIALSTDEK  194 (333)
T ss_dssp             CCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEE--------------EESSEEEEEECTTSS
T ss_pred             CCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE----Eeec--------------CCCcccceEECCCCC
Confidence            4578999999999 87776653      355666665543321    1111              123578899999998


Q ss_pred             eEEEE-e-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721          341 HLLSR-D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  418 (457)
Q Consensus       341 ~l~s~-~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~  418 (457)
                      +|+.+ + ++.|.+||+...+..+..+......     .+.   .......++++++|+++++...++.|.+||.. + .
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~---~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g-~  264 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFT---GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G-Y  264 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECC---SSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-S-C
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecC---CCCCCCceEECCCCCEEEEEcCCCEEEEECCC-C-C
Confidence            76654 3 3899999996434433322100000     000   00011479999999988888888999999984 4 3


Q ss_pred             eeeEEecCCC------cceeeeeccCCccee
Q 012721          419 GGITVEAGKN------ENRKPILQAAPRARR  443 (457)
Q Consensus       419 ~~~~~~~~~~------~v~~~~~~p~~~~~~  443 (457)
                      ....+..+..      .+..++|+|++....
T Consensus       265 ~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~  295 (333)
T 2dg1_A          265 PIGQILIPGRDEGHMLRSTHPQFIPGTNQLI  295 (333)
T ss_dssp             EEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             EEEEEEcCCCccccccCcceEEECCCCCEEE
Confidence            4455544432      688999999975443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=7.1e-16  Score=143.89  Aligned_cols=253  Identities=13%  Similarity=0.077  Sum_probs=148.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...+..++|+|||+.|+.++.++.|++||+.+++..                           ..+..+.          
T Consensus        80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~---------------------------~~~~~~~----------  122 (388)
T 3pe7_A           80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN---------------------------VVYQVPA----------  122 (388)
T ss_dssp             CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE---------------------------EEEECCT----------
T ss_pred             CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcce---------------------------eeeechh----------
Confidence            344456789999999999999999999999887642                           1223333          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEee----------------------CCCeEEEEEecccceeEEEeecCCCceeeeeeccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILST----------------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s----------------------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (457)
                        ..+....|..++++.+++...                      .+..|.+||+.+++...+                 
T Consensus       123 --~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-----------------  183 (388)
T 3pe7_A          123 --EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI-----------------  183 (388)
T ss_dssp             --TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-----------------
T ss_pred             --hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-----------------
Confidence              334445554478888776421                      223455555544433222                 


Q ss_pred             cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-C------CCeE
Q 012721          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-D------DLRI  241 (457)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~------d~~i  241 (457)
                                                                   ..+...+..++|+| +|+.|+.+ .      ...|
T Consensus       184 ---------------------------------------------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l  218 (388)
T 3pe7_A          184 ---------------------------------------------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARM  218 (388)
T ss_dssp             ---------------------------------------------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSE
T ss_pred             ---------------------------------------------ecCCccccccEECCCCCCEEEEEEecCCCCCcceE
Confidence                                                         23445688999999 99988876 4      3378


Q ss_pred             EEEEcCCCcceeeeeecCCCcccCCC--CceEEEEEecCCccEEEEEc-cCC----eEEEEEccCCeeeccccccccccc
Q 012721          242 NLWNLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAYSS-SRG----FVRLVDMRQSALCDHSARILRDAA  314 (457)
Q Consensus       242 ~iwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~v~~~p~~~~~l~~~~-~dg----~i~lwd~~~~~~~~~~~~~~~~~~  314 (457)
                      .++|.. .+....        +..+.  ..+..++|+|+| +.|+..+ .++    .|.+||+.+++..    .+...  
T Consensus       219 ~~~d~~-~~~~~~--------l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~--  282 (388)
T 3pe7_A          219 WLINED-GTNMRK--------VKTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENR----QLTSM--  282 (388)
T ss_dssp             EEEETT-SCCCEE--------SCCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEE----EEEEE--
T ss_pred             EEEeCC-CCceEE--------eeeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceE----EEEcC--
Confidence            888876 333332        22233  357788999999 7565443 222    4999999987532    11111  


Q ss_pred             cccCcccceeccc-cceEEEEEccCCCeEEEE---------e-cCcEEEEeccCCCCceeEeeeccccccccccccCCCC
Q 012721          315 ESHGSKSFFTEII-ASISDIKFANDGQHLLSR---------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS  383 (457)
Q Consensus       315 ~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~---------~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (457)
                        +.     ..|. .....+.|+|||+.|+..         . +..|++||+.. + .+..+..+......+    ..+.
T Consensus       283 --~~-----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~~~~~~----~~~~  349 (388)
T 3pe7_A          283 --PA-----CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-G-TQHRVARHDTSWKVF----EGDR  349 (388)
T ss_dssp             --CC-----EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT-T-EEEEEEECCCCCCCB----TTBS
T ss_pred             --CC-----ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC-C-ceEEeccccCccccc----cccc
Confidence              00     0000 001123799999988842         2 37899999974 3 344555444310000    0000


Q ss_pred             ccccceEEEcCCCcEEEEEe-CCCcEEEEecC
Q 012721          384 IFDKFECSVSGDGLHFATGS-YSNLLRIFSHG  414 (457)
Q Consensus       384 ~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~  414 (457)
                      ...+..++|+|||+.|+..+ .+|...||.+.
T Consensus       350 ~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          350 QVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             STTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            00115789999999888766 46766666554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=2.8e-15  Score=150.15  Aligned_cols=177  Identities=14%  Similarity=0.006  Sum_probs=105.0

Q ss_pred             CCCCeeEEEeCCCCCEEEEe-CC--------CeEEEEEcCCCc---ceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721          217 HDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~-~d--------~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~  284 (457)
                      +...+..++|+|||++|+.+ .+        ..|++||+...+   ....+       ..++...+..++|+|+| ++++
T Consensus       186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-------~~~~~~~~~~~~~spdg-~l~~  257 (662)
T 3azo_A          186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL-------LGGPEEAIAQAEWAPDG-SLIV  257 (662)
T ss_dssp             CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE-------EEETTBCEEEEEECTTS-CEEE
T ss_pred             CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe-------CCCCCceEcceEECCCC-eEEE
Confidence            34567788999999999876 44        379999998323   33332       23456788999999999 7888


Q ss_pred             EEccCC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCce
Q 012721          285 YSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV  362 (457)
Q Consensus       285 ~~~~dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~  362 (457)
                      +++.++  .|.+||+.+++..    .+...+.....     ..-...+..++|+|+++++++++.+.++||.++..+..+
T Consensus       258 ~~~~~~~~~l~~~~~~~~~~~----~l~~~~~~~~~-----p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  328 (662)
T 3azo_A          258 ATDRTGWWNLHRVDPATGAAT----QLCRREEEFAG-----PLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGEL  328 (662)
T ss_dssp             EECTTSSCEEEEECTTTCCEE----ESSCCSSBSSC-----CCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEE
T ss_pred             EECCCCCeEEEEEECCCCcee----ecccccccccC-----ccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcE
Confidence            888888  6666666555432    12111000000     000011456899999999888755888888554333446


Q ss_pred             eEeeeccccccccccccCCCCccccceE-EEcCCCcEEEEEeCCC--cEEEEecCCCCceeeEEecC
Q 012721          363 ATFKIHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSN--LLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~  426 (457)
                      ..+..+...+               ..+ +++++.-++++++.+.  .|++||+.++ +.......+
T Consensus       329 ~~l~~~~~~~---------------~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~l~~~~  379 (662)
T 3azo_A          329 VDAAGPWTEW---------------AATLTVSGTRAVGVAASPRTAYEVVELDTVTG-RARTIGARH  379 (662)
T ss_dssp             EECCSSCCEE---------------EEEEEEETTEEEEEEEETTEEEEEEEEETTTC-CEEEEESCC
T ss_pred             EEecCCCCeE---------------EEEEecCCCEEEEEEcCCCCCCEEEEEECCCC-ceEEeecCC
Confidence            6666554432               234 3333333344455554  4666677677 333333344

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.68  E-value=2.6e-14  Score=128.07  Aligned_cols=240  Identities=8%  Similarity=-0.011  Sum_probs=166.5

Q ss_pred             cCCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        31 h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      +.....+++|+|+|+ +++++..++.|..|+..++ .                            ..+..+.        
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----------------------------~~~~~~~--------   68 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----------------------------SPEMHPS--------   68 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----------------------------EEEESSC--------
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----------------------------EEEECCC--------
Confidence            566788999999998 7888888999999998765 2                            2333344        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..+.++++  +++|.++++...++.|.+||..+++.........                                
T Consensus        69 ----~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--------------------------------  110 (296)
T 3e5z_A           69 ----HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSFE--------------------------------  110 (296)
T ss_dssp             ----SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEET--------------------------------
T ss_pred             ----CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC--------------------------------
Confidence                56899999  7899887777777899999998776543321100                                


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE----e-C-------------CCeEEEEEcCCCcc
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQ  251 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~-~-------------d~~i~iwd~~~~~~  251 (457)
                                               ......+..++++|+|+++++    | .             .+.|..++..  +.
T Consensus       111 -------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~  163 (296)
T 3e5z_A          111 -------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT  163 (296)
T ss_dssp             -------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC
T ss_pred             -------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CC
Confidence                                     111234678999999998887    3 1             2455555544  33


Q ss_pred             eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEcc-CCee-eccccccccccccccCcccceeccccc
Q 012721          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSAL-CDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      ...        +..+......++|+|++ +.+++.+.++.|.+||+. .++. ..  ...+ .            .+...
T Consensus       164 ~~~--------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~-~------------~~~~~  219 (296)
T 3e5z_A          164 LSA--------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHF-T------------VEPGK  219 (296)
T ss_dssp             EEE--------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEE-C------------CSSSC
T ss_pred             EEE--------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEe-e------------CCCCC
Confidence            222        23345567899999999 777778888999999987 3332 10  0122 1            12245


Q ss_pred             eEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE-cCCCcEEEEEeCCCcE
Q 012721          330 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLL  408 (457)
Q Consensus       330 v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~s~~~dg~i  408 (457)
                      +..++++++|++.++. ++.|.+||..  ++.+..+..+.. +               .+++| +|+++.|++++.++ +
T Consensus       220 p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~~L~v~t~~~-l  279 (296)
T 3e5z_A          220 TDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGRTLYMTVSTE-F  279 (296)
T ss_dssp             CCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSCEEEEEETTE-E
T ss_pred             CCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCCEEEEEcCCe-E
Confidence            6789999999977777 7899999985  677777766654 3               58899 58999898888764 4


Q ss_pred             EEEecCCC
Q 012721          409 RIFSHGVG  416 (457)
Q Consensus       409 ~iw~~~~~  416 (457)
                      .-++.++.
T Consensus       280 ~~~~~~~~  287 (296)
T 3e5z_A          280 WSIETNVR  287 (296)
T ss_dssp             EEEECSCC
T ss_pred             EEEEcccc
Confidence            45555554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.66  E-value=5.1e-14  Score=141.93  Aligned_cols=248  Identities=9%  Similarity=0.060  Sum_probs=157.1

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCC-----eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      |...+..++|||||++||.+..++     .|++||+.+++..                         . ..+..      
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~-------------------------~-~~~~~------  170 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL-------------------------P-DVLER------  170 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-------------------------E-EEEEE------
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------c-ccccC------
Confidence            344689999999999999775433     8999999887642                         0 01111      


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCe----------------EEEEEecccceeEEEeecCCCceeeeeeccc
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT----------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~----------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (457)
                              ..+..++|  +|||+.|+.++.++.                |++|++.++.......               
T Consensus       171 --------~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v---------------  225 (710)
T 2xdw_A          171 --------VKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC---------------  225 (710)
T ss_dssp             --------ECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE---------------
T ss_pred             --------cccceEEE--EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEE---------------
Confidence                    22567899  789999999887765                6666665543211000               


Q ss_pred             cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-----CCeEEE
Q 012721          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINL  243 (457)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-----d~~i~i  243 (457)
                                                               .. ...|...+..+.|+|||++|+.+ .     +..|++
T Consensus       226 -----------------------------------------~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~  263 (710)
T 2xdw_A          226 -----------------------------------------AE-FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY  263 (710)
T ss_dssp             -----------------------------------------EC-CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred             -----------------------------------------ec-cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence                                                     00 02345567889999999998875 3     678999


Q ss_pred             EEcCC------CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc----CCeEEEEEccCCeeecccccccccc
Q 012721          244 WNLEI------SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDA  313 (457)
Q Consensus       244 wd~~~------~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~----dg~i~lwd~~~~~~~~~~~~~~~~~  313 (457)
                      ||+..      .......       +..+...+.. .|+|+| ..|+..+.    .+.|.+||+.++...  ..+.    
T Consensus       264 ~d~~~~~~~~~~~~~~~~-------l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~----  328 (710)
T 2xdw_A          264 CDLQQESNGITGILKWVK-------LIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES--KWKV----  328 (710)
T ss_dssp             EEGGGSSSSSCSSCCCEE-------EECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG--GCEE----
T ss_pred             EECcccccccCCccceEE-------eeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc--ccee----
Confidence            99984      2112222       2334444444 488888 65555443    346999998775310  0011    


Q ss_pred             ccccCcccceeccc--cceEEEEEccCCCeEEEEec-C--cEEEEeccCCCCceeEeeeccccccccccccCCCCccccc
Q 012721          314 AESHGSKSFFTEII--ASISDIKFANDGQHLLSRDY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  388 (457)
Q Consensus       314 ~~~~~~~~~~~~h~--~~v~~~~~s~~g~~l~s~~~-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  388 (457)
                               +..|.  ..+..+.|++++.++++..+ +  .|.+||+.. ++.+..+..+...+               .
T Consensus       329 ---------l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v---------------~  383 (710)
T 2xdw_A          329 ---------LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV---------------V  383 (710)
T ss_dssp             ---------EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE---------------E
T ss_pred             ---------ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE---------------E
Confidence                     11122  25778899877777777653 5  466677643 66666666554332               4


Q ss_pred             eEEEcCCCcEEEEE-e---CCCcEEEEecCCCC
Q 012721          389 ECSVSGDGLHFATG-S---YSNLLRIFSHGVGS  417 (457)
Q Consensus       389 ~~~~s~d~~~l~s~-~---~dg~i~iw~~~~~~  417 (457)
                      .++++|++..|+.. +   ..++|++||+.+++
T Consensus       384 ~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          384 GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            68889998766533 2   35789999999884

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=1.9e-14  Score=144.68  Aligned_cols=249  Identities=10%  Similarity=-0.003  Sum_probs=154.5

Q ss_pred             cCCceEEEEECCCCCEEE-----EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           31 DVDIVSAIEFDKTGDYLA-----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~la-----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      |...+.+++|||||++||     .|+.+..|++||+.+++..                           .  ..+...  
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~---------------------------~--~~~~~~--  167 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS---------------------------K--VDVIEG--  167 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC---------------------------S--SCCBSC--
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc---------------------------C--CcccCc--
Confidence            445799999999999998     4445578999999988641                           0  111100  


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCe-------------EEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~-------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (457)
                              .....++|  ++||+.|+.++.|..             |++|++.++.......+.                
T Consensus       168 --------~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~----------------  221 (695)
T 2bkl_A          168 --------GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE----------------  221 (695)
T ss_dssp             --------CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC----------------
T ss_pred             --------ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe----------------
Confidence                    11256889  799999999988765             788877665421110000                


Q ss_pred             ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCC----eEEEEEcC
Q 012721          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLE  247 (457)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~----~i~iwd~~  247 (457)
                                                               ...+...+..+.|+|||++|+.+ .++    .|++|+..
T Consensus       222 -----------------------------------------~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~  260 (695)
T 2bkl_A          222 -----------------------------------------RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG  260 (695)
T ss_dssp             -----------------------------------------CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred             -----------------------------------------cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence                                                     03455678899999999998886 554    67777654


Q ss_pred             CCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc---cCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (457)
                       .+....+        ..+...+....+ ++| .+++.+.   .++.|.+||+.+++... ...++..            
T Consensus       261 -~~~~~~l--------~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~------------  316 (695)
T 2bkl_A          261 -EKDFRLL--------VKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPE------------  316 (695)
T ss_dssp             -CSSCEEE--------EECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGG-CEEEECC------------
T ss_pred             -CCceEEe--------ecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccC-CeEEecC------------
Confidence             2333322        234444555556 777 5444444   25889999987753100 0011111            


Q ss_pred             ccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeec-cccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721          325 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (457)
Q Consensus       325 ~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  402 (457)
                      .....+..++|+ ++.++++.. ++..++|.+...++....+..+ ...+               ..++++||+..|+..
T Consensus       317 ~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~~s~d~~~l~~~  380 (695)
T 2bkl_A          317 DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA---------------SNLMGLEDLDDAYYV  380 (695)
T ss_dssp             CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE---------------CCCBSCTTCSEEEEE
T ss_pred             CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE---------------EEeecCCCCCEEEEE
Confidence            002357788888 666777665 4777777665335555555443 2221               467888998777632


Q ss_pred             ----eCCCcEEEEecCCCC
Q 012721          403 ----SYSNLLRIFSHGVGS  417 (457)
Q Consensus       403 ----~~dg~i~iw~~~~~~  417 (457)
                          ...++|++||+.+++
T Consensus       381 ~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          381 FTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEETTEEEEEEEEETTTCC
T ss_pred             EcCCCCCCEEEEEECCCCc
Confidence                235789999999884

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.64  E-value=2e-12  Score=125.12  Aligned_cols=310  Identities=13%  Similarity=0.075  Sum_probs=184.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEec--CCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      ...+..+.|+|||+++++++.++.|.+||+.  +.+                           .+.++...         
T Consensus       196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~---------------------------~v~~i~~G---------  239 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT---------------------------TVAEIKIG---------  239 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC---------------------------EEEEEECC---------
T ss_pred             CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc---------------------------EeEEEecC---------
Confidence            4467799999999999999999999999985  443                           22333322         


Q ss_pred             ccccCcEEEEEEEec----CCCCEEEEee-CCCeEEEEEecccceeEEEeecC----------CCceeeeeecccccccc
Q 012721          110 LEIEEKINRVRWCAA----PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDH----------FPFVSSENTLLAEKNFM  174 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s----~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  174 (457)
                          .....++|  +    |+|++++++. .+++|.++|..+.+....+....          ...+..+..+......+
T Consensus       240 ----~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v  313 (567)
T 1qks_A          240 ----SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI  313 (567)
T ss_dssp             ----SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred             ----CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence                23578888  6    5998888766 56999999998887776654321          11122222211111000


Q ss_pred             ccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcce
Q 012721          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQC  252 (457)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~  252 (457)
                                 .+  ....+.+.++|........ +..  .........+.|+|++++++++  .++.|.++|+. .++.
T Consensus       314 -----------v~--~~~~g~v~~vd~~~~~~~~-v~~--i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~-t~kl  376 (567)
T 1qks_A          314 -----------VN--VKETGKILLVDYTDLNNLK-TTE--ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKL  376 (567)
T ss_dssp             -----------EE--ETTTTEEEEEETTCSSEEE-EEE--EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEE
T ss_pred             -----------EE--ecCCCeEEEEecCCCccce-eee--eeccccccCceECCCCCEEEEEeCCCCeEEEEECC-CCcE
Confidence                       00  0123456666654332111 111  1233456788999999998765  78999999999 5666


Q ss_pred             eeeeec-CCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeec---cccccccccccccCcccceeccc
Q 012721          253 FNIVDM-KPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCD---HSARILRDAAESHGSKSFFTEII  327 (457)
Q Consensus       253 ~~~~~~-~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~  327 (457)
                      ...+.+ .   ...|.+.-..+ ++|++...++++. .++.|.++|....+...   +.++.+..             ..
T Consensus       377 ~~~i~vgg---~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-------------~g  439 (567)
T 1qks_A          377 VAIEDTGG---QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-------------LG  439 (567)
T ss_dssp             EEEEECSS---SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-------------SC
T ss_pred             EEEEeccC---cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-------------CC
Confidence            665544 2   12344322222 6887536666654 56899999988732110   00111111             11


Q ss_pred             cceEEEEEccCCCeEEEEe--------cCcEEEEeccCC-----CCceeEeeeccccccccccccCCCCccccceEEEcC
Q 012721          328 ASISDIKFANDGQHLLSRD--------YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~--------~~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  394 (457)
                      ..-..+..+|+++++.+..        .+.|.++|+.+.     .+.+..+...+-.     .+  .+.-..+..+.|+|
T Consensus       440 ~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~  512 (567)
T 1qks_A          440 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA-----GI--TEGQPRVVQGEFNK  512 (567)
T ss_dssp             SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH-----TC--CSSCCEEEEEEECT
T ss_pred             CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc-----cc--CCCCcceEeeeECC
Confidence            2224577899999998754        259999999863     2222333211000     00  00000125899999


Q ss_pred             CCcEEEEEe-----CCCcEEEEecCCCCceeeEEec
Q 012721          395 DGLHFATGS-----YSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       395 d~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      +|+++..+.     .++.|.|+|.+++ +...++..
T Consensus       513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~-~~~~~i~~  547 (567)
T 1qks_A          513 DGTEVWFSVWNGKDQESALVVVDDKTL-ELKHVIKD  547 (567)
T ss_dssp             TSSEEEEEEECCTTSCCEEEEEETTTT-EEEEEECC
T ss_pred             CCCEEEEEeecCCCCCCcEEEEECCCc-eEEEEeCC
Confidence            999877663     3789999999998 55666654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.64  E-value=5.7e-13  Score=121.38  Aligned_cols=245  Identities=10%  Similarity=0.088  Sum_probs=156.1

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      +...+.+++|+++|++++++..++.|.+|+.++++..                           .....+.         
T Consensus        43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---------------------------~~~~~~~---------   86 (333)
T 2dg1_A           43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------------RPFVSHK---------   86 (333)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------------EEEECSS---------
T ss_pred             cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE---------------------------EEeeCCC---------
Confidence            4567899999999998888888999999998766531                           1111233         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCC----CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                         ..+.++++  ++++.++++...+    +.|.+||..++........                               
T Consensus        87 ---~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------------------------  130 (333)
T 2dg1_A           87 ---ANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-------------------------------  130 (333)
T ss_dssp             ---SSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-------------------------------
T ss_pred             ---CCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-------------------------------
Confidence               56999999  7888887777666    6899999877654322110                               


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C------CCeEEEEEcCCCcceeeeeecC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMK  259 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~  259 (457)
                                                  ..+...+..++++|+++++++. .      .+.|..+|.. .++....    
T Consensus       131 ----------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-~~~~~~~----  177 (333)
T 2dg1_A          131 ----------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPI----  177 (333)
T ss_dssp             ----------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEE----
T ss_pred             ----------------------------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-CCEEEEe----
Confidence                                        1233468899999999888876 3      2556666655 2333222    


Q ss_pred             CCcccCCCCceEEEEEecCCcc-EEEEEccCCeEEEEEccC-CeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721          260 PSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  337 (457)
                          ......+..++|+|++ + ++++.+.++.|.+||+.+ +...    ..+.. .    ....+.++ ..+..+++++
T Consensus       178 ----~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~-~----~~~~~~~~-~~~~~i~~d~  242 (333)
T 2dg1_A          178 ----IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGA-T----IPYYFTGH-EGPDSCCIDS  242 (333)
T ss_dssp             ----EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEE-E----EEEECCSS-SEEEEEEEBT
T ss_pred             ----ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccc-e----EEEecCCC-CCCCceEECC
Confidence                1122457889999998 6 445556789999999864 2211    00000 0    00000111 3567899999


Q ss_pred             CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          338 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       338 ~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                      +|+++++... +.|.+||..  ++.+..+..+.....         ....+.+++|+||+..|+.++.++
T Consensus       243 ~G~l~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~g---------~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          243 DDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGRDEG---------HMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TCCEEEEEETTTEEEEECTT--SCEEEEEECTTGGGT---------CSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCEEEEEcCCCEEEEECCC--CCEEEEEEcCCCccc---------cccCcceEEECCCCCEEEEEeCcc
Confidence            9988777654 899999984  566666654432000         000015899999987776655553

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=1.5e-13  Score=125.02  Aligned_cols=269  Identities=9%  Similarity=0.006  Sum_probs=161.0

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      +.+.+|++  +++|+++++...++.+.+++.........   ..                              ......
T Consensus        24 ~~v~~va~--d~~G~l~v~~~~~~~~~~~~~~~~~~~~~---~~------------------------------~~~~~~   68 (329)
T 3fvz_A           24 GQVSGVAL--DSKNNLVIFHRGDHVWDGNSFDSKFVYQQ---RG------------------------------LGPIEE   68 (329)
T ss_dssp             SCEEEEEE--CTTCCEEEEECTTCCCCTTSBCTTSCBSC---GG------------------------------GCSCCS
T ss_pred             CCceEEEE--CCCCCEEEEeCCCCeEEeeccCcceeecc---cc------------------------------cccccC
Confidence            67999999  78998888888775443332221110000   00                              000012


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecC--CCcccCCCCce
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVI  270 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~i  270 (457)
                      +.+.+||.++.   +.+.....++......++++|+|+++++. .++.|++||.......+..+...  +..-.++...+
T Consensus        69 ~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P  145 (329)
T 3fvz_A           69 DTILVIDPNNA---EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQP  145 (329)
T ss_dssp             CCEEEECTTTC---CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSE
T ss_pred             CcEEEEECCCC---eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCC
Confidence            34555554321   11222213445578899999999988888 89999999987221133332110  00013445578


Q ss_pred             EEEEEec-CCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEec
Q 012721          271 TSAEFHP-IYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY  347 (457)
Q Consensus       271 ~~v~~~p-~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~  347 (457)
                      ..++++| ++ .++++.+ .++.|++||. .++..    ..+.......   ....++-.....++++|+ +.++++...
T Consensus       146 ~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~~~----~~~~~~g~~~---~~~~~~~~~p~gia~d~~~g~l~v~d~~  216 (329)
T 3fvz_A          146 TDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGKFV----TQWGEESSGS---SPRPGQFSVPHSLALVPHLDQLCVADRE  216 (329)
T ss_dssp             EEEEECTTTC-CEEEEECSSCCEEEEECT-TSCEE----EEECEECCSS---SCCTTEESCEEEEEEETTTTEEEEEETT
T ss_pred             cEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCCEE----EEeccCCCCC---CCCCcccCCCcEEEEECCCCEEEEEECC
Confidence            9999999 67 8888886 6999999994 44322    2222100000   000112245789999999 665556544


Q ss_pred             -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC------CCcEEEEEeCCCcEEEEecCCCCcee
Q 012721          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVGSAGG  420 (457)
Q Consensus       348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------d~~~l~s~~~dg~i~iw~~~~~~~~~  420 (457)
                       +.|++||..+ ++.+..+.......             .+..++|+|      +++..++...+.+|++|++.++ +..
T Consensus       217 ~~~I~~~~~~~-G~~~~~~~~~~~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g-~~~  281 (329)
T 3fvz_A          217 NGRIQCFKTDT-KEFVREIKHASFGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG-EII  281 (329)
T ss_dssp             TTEEEEEETTT-CCEEEEECCTTTTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC-CEE
T ss_pred             CCEEEEEECCC-CcEEEEEeccccCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC-eEE
Confidence             8999999974 77777765332111             115788888      3333333334568999999998 556


Q ss_pred             eEE---ecCCCcceeeeeccCCcceec
Q 012721          421 ITV---EAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       421 ~~~---~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ..+   .++......++++|++....+
T Consensus       282 ~~~~~~~~~~~~p~~ia~~~dG~lyva  308 (329)
T 3fvz_A          282 DVFKPVRKHFDMPHDIVASEDGTVYIG  308 (329)
T ss_dssp             EEECCSSSCCSSEEEEEECTTSEEEEE
T ss_pred             EEEcCCCCccCCeeEEEECCCCCEEEE
Confidence            665   467778899999999965555

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.62  E-value=1.3e-13  Score=126.33  Aligned_cols=241  Identities=14%  Similarity=0.107  Sum_probs=153.9

Q ss_pred             ccCCceEEEEECCCCCEEEEEe---------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccC
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH  100 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  100 (457)
                      .....+..+++  ||+++|...         .++.|.+|++.+++..                            .+   
T Consensus        12 ~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------------------------~l---   58 (347)
T 2gop_A           12 AKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----------------------------FI---   58 (347)
T ss_dssp             CCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----------------------------EE---
T ss_pred             eeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----------------------------Ec---
Confidence            34567888889  898887642         2567889998776531                            11   


Q ss_pred             CccccccccccccCcEEEEEEEecCCCCEEEEeeCC---C--eEEEEEecccceeEEEeecCCCceeeeeeccccccccc
Q 012721          101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (457)
Q Consensus       101 ~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d---~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (457)
                                   ..+..++|  +|+|+.|+.++.+   +  .|.+|++.+++...+..                     
T Consensus        59 -------------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~---------------------  102 (347)
T 2gop_A           59 -------------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE---------------------  102 (347)
T ss_dssp             -------------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE---------------------
T ss_pred             -------------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc---------------------
Confidence                         13678899  8999999887643   3  36667777665443321                     


Q ss_pred             cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC----------------
Q 012721          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----------------  238 (457)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d----------------  238 (457)
                                                               +.. +..++|+||++.|+.+ .+                
T Consensus       103 -----------------------------------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~  140 (347)
T 2gop_A          103 -----------------------------------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAW  140 (347)
T ss_dssp             -----------------------------------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC
T ss_pred             -----------------------------------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccccee
Confidence                                                     122 7889999999988876 32                


Q ss_pred             -----------CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC-------eEEEEEccCC
Q 012721          239 -----------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQS  300 (457)
Q Consensus       239 -----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-------~i~lwd~~~~  300 (457)
                                 ..|++||+. .++....+       .. . .+..++|+|+|  +++++..++       ...||.+.++
T Consensus       141 ~~g~~~~~~~~~~l~~~d~~-~~~~~~~l-------~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~  208 (347)
T 2gop_A          141 FDDLGFFDGEKTTFWIFDTE-SEEVIEEF-------EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG  208 (347)
T ss_dssp             ---------CEEEEEEEETT-TTEEEEEE-------EE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred             ecCcccccCccceEEEEECC-CCeEEeee-------cC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC
Confidence                       578999998 45442222       22 2 57789999998  566555432       3455544443


Q ss_pred             eeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec---------CcEEEEeccCCCCceeEeeecccc
Q 012721          301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---------MNLKLWDIRMDSTPVATFKIHEHL  371 (457)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---------~~i~~wd~~~~~~~~~~~~~~~~~  371 (457)
                      +.     ..+.             .+ ..+..+  +|+|++|+..+.         ..|.+||  . ++.......+...
T Consensus       209 ~~-----~~l~-------------~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~  264 (347)
T 2gop_A          209 KE-----EKMF-------------EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRG  264 (347)
T ss_dssp             EE-----EEEE-------------EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSE
T ss_pred             ce-----EEec-------------cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcc
Confidence            21     1111             11 234444  999999886542         3577777  2 4433333333332


Q ss_pred             ccccccccCCCCccccce-EEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeecc
Q 012721          372 RPKLCDLYNNDSIFDKFE-CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  437 (457)
Q Consensus       372 ~~~~~~~~~~~~~~~v~~-~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p  437 (457)
                      +               .. +.|+ |+ ++++++.++.++|| +.++ +. ..+..+...+..+.|+|
T Consensus       265 ~---------------~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          265 V---------------GQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             E---------------EEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS
T ss_pred             c---------------CCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC
Confidence            2               34 8899 88 88999999999999 8855 44 33444577889999998

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.62  E-value=9.3e-13  Score=117.20  Aligned_cols=231  Identities=10%  Similarity=0.077  Sum_probs=158.3

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..+.++++  ++++.++++...++.|.+|+.. ++....+.....                                   
T Consensus        30 ~~p~~v~~--~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~-----------------------------------   71 (286)
T 1q7f_A           30 TEPSGVAV--NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK-----------------------------------   71 (286)
T ss_dssp             SCEEEEEE--CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS-----------------------------------
T ss_pred             CCCceEEE--CCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC-----------------------------------
Confidence            56889999  6888888888889999999977 433322110000                                   


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEe-CCCCCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                          ..++...+..+++ .+++.++++. . ++.|.+||..  +.....+.      ..+...+
T Consensus        72 --------------------~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~~~~~~~------~~~~~~~  123 (286)
T 1q7f_A           72 --------------------RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKFG------ATILQHP  123 (286)
T ss_dssp             --------------------STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEEC------TTTCSCE
T ss_pred             --------------------CcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--CcEEEEec------CccCCCc
Confidence                                0234556889999 5778777776 4 8999999954  44444331      2244568


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~  349 (457)
                      .+++++|+| +++++...++.|.+||.... ..    ..+..           ..+...+..++++|+|+++++... +.
T Consensus       124 ~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~----~~~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~~~~  186 (286)
T 1q7f_A          124 RGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHC  186 (286)
T ss_dssp             EEEEECTTS-CEEEEETTTTEEEEECTTSC-EE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             eEEEEeCCC-CEEEEECCCCEEEEEcCCCC-EE----EEeCC-----------CCccCCcEEEEECCCCCEEEEECCCCE
Confidence            999999999 88888888899999996542 21    11211           012345889999999997777654 99


Q ss_pred             EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC-cEEEEecCCCCceeeEEecCCC
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKN  428 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~  428 (457)
                      |++||..  ++.+..+..+....             ....++++++|+++++...++ .|.+|+.. + .....+..+..
T Consensus       187 i~~~~~~--g~~~~~~~~~g~~~-------------~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g-~~~~~~~~~~~  249 (286)
T 1q7f_A          187 VKVFNYE--GQYLRQIGGEGITN-------------YPIGVGINSNGEILIADNHNNFNLTIFTQD-G-QLISALESKVK  249 (286)
T ss_dssp             EEEEETT--CCEEEEESCTTTSC-------------SEEEEEECTTCCEEEEECSSSCEEEEECTT-S-CEEEEEEESSC
T ss_pred             EEEEcCC--CCEEEEEccCCccC-------------CCcEEEECCCCCEEEEeCCCCEEEEEECCC-C-CEEEEEcccCC
Confidence            9999974  55565554332110             115899999999888888776 99999954 4 44555555443


Q ss_pred             --cceeeeeccCCcceec
Q 012721          429 --ENRKPILQAAPRARRS  444 (457)
Q Consensus       429 --~v~~~~~~p~~~~~~~  444 (457)
                        .+..++++|++....+
T Consensus       250 ~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          250 HAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             CSCEEEEEEETTTEEEEE
T ss_pred             CCcceeEEECCCCcEEEE
Confidence              3668999999976655

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=3.1e-13  Score=119.19  Aligned_cols=237  Identities=8%  Similarity=0.001  Sum_probs=157.2

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        34 ~V~~~~~s~~~~~la-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      ...+++++++|++++ +...++.|.+|+..+....                           .....+.           
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------------~~~~~~~-----------   66 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------VLPFNGL-----------   66 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------ECCCCSC-----------
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------eEeeCCc-----------
Confidence            789999999999777 5467788999986554321                           0001111           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                       ..+.++++  ++++.++++.. ++.|.+|+..++..... .                                      
T Consensus        67 -~~p~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~-~--------------------------------------  103 (270)
T 1rwi_B           67 -YQPQGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVL-P--------------------------------------  103 (270)
T ss_dssp             -CSCCCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEEC-C--------------------------------------
T ss_pred             -CCcceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeee-e--------------------------------------
Confidence             34677888  67887666655 88899998765432211 0                                      


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                                            ......+..++++++++++++. .++.|.+|+.. .......       .......+.
T Consensus       104 ----------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~~~~-------~~~~~~~p~  153 (270)
T 1rwi_B          104 ----------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG-SKTQTVL-------PFTGLNDPD  153 (270)
T ss_dssp             ----------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTT-CCSCEEC-------CCCSCCSCC
T ss_pred             ----------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECC-CceeEee-------ccccCCCce
Confidence                                  1122457899999999988877 78999999765 2222111       112234577


Q ss_pred             EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcE
Q 012721          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  350 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i  350 (457)
                      +++++++| +++++...++.|.+||........    ...             .+...+..++++++|.++++... +.|
T Consensus       154 ~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~----~~~-------------~~~~~p~~i~~d~~g~l~v~~~~~~~v  215 (270)
T 1rwi_B          154 GVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVV----LPF-------------TDITAPWGIAVDEAGTVYVTEHNTNQV  215 (270)
T ss_dssp             CEEECTTC-CEEEEEGGGTEEEEECTTTCCEEE----CCC-------------SSCCSEEEEEECTTCCEEEEETTTSCE
T ss_pred             eEEEeCCC-CEEEEECCCCEEEEEecCCCceEe----ecc-------------cCCCCceEEEECCCCCEEEEECCCCcE
Confidence            89999999 888877788999999987653221    000             11145789999999976666544 899


Q ss_pred             EEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          351 KLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       351 ~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      .+||...  ....... .+...               ...++++++|+++++...+++|+++++...
T Consensus       216 ~~~~~~~--~~~~~~~~~~~~~---------------p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          216 VKLLAGS--TTSTVLPFTGLNT---------------PLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEECTTC--SCCEECCCCSCSC---------------EEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             EEEcCCC--CcceeeccCCCCC---------------ceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            9999863  2222221 11111               158999999998888889999999998865

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.61  E-value=2.5e-12  Score=124.50  Aligned_cols=268  Identities=10%  Similarity=0.003  Sum_probs=177.8

Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEE
Q 012721           42 KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW  121 (457)
Q Consensus        42 ~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~  121 (457)
                      +.+.++++...+++|.++|..+++.                           +.++...             ..+..+.|
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v---------------------------~~~i~~g-------------~~p~~v~~  204 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEI---------------------------KTVLDTG-------------YAVHISRL  204 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCE---------------------------EEEEECS-------------SCEEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeE---------------------------EEEEeCC-------------CCccceEE
Confidence            4455677778889999999988764                           2333322             34678888


Q ss_pred             EecCCCCEEEEeeCCCeEEEEEec--ccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEE
Q 012721          122 CAAPNGSMFILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA  199 (457)
Q Consensus       122 ~~s~~~~~l~s~s~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  199 (457)
                        +++|+++++++.|+.|.+||+.  +++....+.                                             
T Consensus       205 --SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---------------------------------------------  237 (567)
T 1qks_A          205 --SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---------------------------------------------  237 (567)
T ss_dssp             --CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE---------------------------------------------
T ss_pred             --CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe---------------------------------------------
Confidence              8999999999999999999995  554433221                                             


Q ss_pred             eccCccccccceeeccCCCCCeeEEEeC----CCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCccc---CCCC-c
Q 012721          200 NVGNSVHARCQKVYPHAHDFNINSISNN----SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLTE-V  269 (457)
Q Consensus       200 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~-~  269 (457)
                                     .  ......++|+    |||++++++  .++.|.++|.. ..+.++.+.+......   .|.. .
T Consensus       238 ---------------~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~r  299 (567)
T 1qks_A          238 ---------------I--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPR  299 (567)
T ss_dssp             ---------------C--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCC
T ss_pred             ---------------c--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCc
Confidence                           1  1134688999    699998886  78999999988 5666665543221111   1222 5


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-  347 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-  347 (457)
                      +..+..+++++.+++....+|.|.++|....+...  +..+..              ......+.|+|+|++++++. . 
T Consensus       300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~--------------~~~~~d~~~~pdgr~~~va~~~s  363 (567)
T 1qks_A          300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA--------------ERFLHDGGLDGSHRYFITAANAR  363 (567)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC--------------CSSEEEEEECTTSCEEEEEEGGG
T ss_pred             eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec--------------cccccCceECCCCCEEEEEeCCC
Confidence            77888899886677777788999999987643210  011111              23466789999999988765 3 


Q ss_pred             CcEEEEeccCCCCceeEeee-ccccccccccccCCCCccccceEE-EcCCCc-EEEEEe-CCCcEEEEecCCCC------
Q 012721          348 MNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECS-VSGDGL-HFATGS-YSNLLRIFSHGVGS------  417 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~s~d~~-~l~s~~-~dg~i~iw~~~~~~------  417 (457)
                      +.|.++|+.+ ++.+..+.. ....-..             ..+. ++|++. ..+++. .++.|.++|..+++      
T Consensus       364 n~V~ViD~~t-~kl~~~i~vgg~~Phpg-------------~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~  429 (567)
T 1qks_A          364 NKLVVIDTKE-GKLVAIEDTGGQTPHPG-------------RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW  429 (567)
T ss_dssp             TEEEEEETTT-TEEEEEEECSSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             CeEEEEECCC-CcEEEEEeccCcCCCCc-------------cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence            9999999986 666665543 2111000             1233 588754 444443 46899999998732      


Q ss_pred             ceeeEEecCCCcceeeeeccCCcceec
Q 012721          418 AGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       418 ~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +...++......-..+..||+++....
T Consensus       430 kvv~~i~~~g~g~~~i~~~p~~~~l~v  456 (567)
T 1qks_A          430 KILDSFPALGGGSLFIKTHPNSQYLYV  456 (567)
T ss_dssp             SEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             EEEEEEecCCCCCEEEEeCCCCCeEEE
Confidence            455666655444456778998875554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.61  E-value=9e-12  Score=111.34  Aligned_cols=268  Identities=9%  Similarity=0.020  Sum_probs=178.2

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      +...+.+++++++|+++++...++.|.+|+.. ++..                         . ..+..+.         
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-------------------------~-~~~~~~~---------   56 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-------------------------E-YPLPTPD---------   56 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-------------------------E-EECSSTT---------
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-------------------------E-ecCCccc---------
Confidence            34689999999999988877667889999977 4321                         0 0111122         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ..+.++++  ++++.++++...++.|..|+.. ++.... ..                                   
T Consensus        57 ---~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~~-----------------------------------   94 (299)
T 2z2n_A           57 ---AKVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEY-TL-----------------------------------   94 (299)
T ss_dssp             ---CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC-----------------------------------
T ss_pred             ---CceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEE-eC-----------------------------------
Confidence               56888998  6888877777778889999875 332211 10                                   


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                              ......+..+++.+++.++++. .++.|..||.. . ......      .......
T Consensus        95 ------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~~~~------~~~~~~~  142 (299)
T 2z2n_A           95 ------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-G-KIREYE------LPNKGSY  142 (299)
T ss_dssp             ------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEEEEE------CSSTTCC
T ss_pred             ------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECCC-C-CEEEec------CCCCCCC
Confidence                                    1123467889999999888887 78999999984 3 222211      2223456


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~  348 (457)
                      +..+++.++| .++++...++.|..||. +++..     .+..           ......+..++++++|++.++... +
T Consensus       143 ~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~  204 (299)
T 2z2n_A          143 PSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKI-----------PTPASGPVGITKGNDDALWFVEIIGN  204 (299)
T ss_dssp             EEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             CceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeC-----------CCCCCcceeEEECCCCCEEEEccCCc
Confidence            8999999998 88887777889999998 54322     1111           011245789999999987776643 8


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  428 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  428 (457)
                      .|.+||. . ++.. .+......             ..+..++++++|+++++...++.|..||. ++......+..+..
T Consensus       205 ~i~~~~~-~-g~~~-~~~~~~~~-------------~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~  267 (299)
T 2z2n_A          205 KIGRITT-S-GEIT-EFKIPTPN-------------ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSA  267 (299)
T ss_dssp             EEEEECT-T-CCEE-EEECSSTT-------------CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSC
T ss_pred             eEEEECC-C-CcEE-EEECCCCC-------------CCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCC
Confidence            8999998 4 4432 23211110             01158999999997776667889999998 45222222344556


Q ss_pred             cceeeeeccCCcceec
Q 012721          429 ENRKPILQAAPRARRS  444 (457)
Q Consensus       429 ~v~~~~~~p~~~~~~~  444 (457)
                      .+.++++ +++....+
T Consensus       268 ~~~~i~~-~~g~l~v~  282 (299)
T 2z2n_A          268 EPHGICF-DGETIWFA  282 (299)
T ss_dssp             CEEEEEE-CSSCEEEE
T ss_pred             ccceEEe-cCCCEEEE
Confidence            7888888 88776555

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.60  E-value=4.5e-13  Score=135.00  Aligned_cols=234  Identities=12%  Similarity=-0.010  Sum_probs=153.8

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCC-----eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                      ..+..++|  ||||++|+.++.++     .|++||+.+++......                                  
T Consensus       125 ~~~~~~~~--SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~----------------------------------  168 (710)
T 2xdw_A          125 VALRGYAF--SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL----------------------------------  168 (710)
T ss_dssp             EEEEEEEE--CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE----------------------------------
T ss_pred             EEEEEEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc----------------------------------
Confidence            35788999  79999998765433     89999999887654211                                  


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCe----------------EEEEEcCCCcc
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR----------------INLWNLEISDQ  251 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~----------------i~iwd~~~~~~  251 (457)
                                                ..  ..+..++|+|||+.|+.+ .++.                |++|++.+...
T Consensus       169 --------------------------~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~  220 (710)
T 2xdw_A          169 --------------------------ER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS  220 (710)
T ss_dssp             --------------------------EE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG
T ss_pred             --------------------------cC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc
Confidence                                      01  125678999999999887 6655                99999984332


Q ss_pred             e-eeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc-----CCeEEEEEccC------CeeeccccccccccccccCc
Q 012721          252 C-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQ------SALCDHSARILRDAAESHGS  319 (457)
Q Consensus       252 ~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----dg~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~  319 (457)
                      . ..++     ....+...+..+.|+|+| ++|+.++.     +..|.+||+.+      +...   ...+         
T Consensus       221 ~~~~v~-----~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~l---------  282 (710)
T 2xdw_A          221 EDILCA-----EFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGILK---WVKL---------  282 (710)
T ss_dssp             GCEEEE-----CCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC---CEEE---------
T ss_pred             cceEEe-----ccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCccc---eEEe---------
Confidence            1 1221     122345667899999999 87777654     57899999876      3210   0111         


Q ss_pred             ccceeccccceEEEEEccCCCeEEEEec-----CcEEEEeccCCCC-ceeEeeeccccccccccccCCCCccccceEEEc
Q 012721          320 KSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWDIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  393 (457)
Q Consensus       320 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~-----~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  393 (457)
                          ..+...+.. .|+|+|+.|+..++     +.|.+||+..... ....+..+....             .+..++|+
T Consensus       283 ----~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~  344 (710)
T 2xdw_A          283 ----IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD-------------VLEWVACV  344 (710)
T ss_dssp             ----ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC-------------EEEEEEEE
T ss_pred             ----eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC-------------eEEEEEEE
Confidence                122233433 48899988775432     4689999875221 234444443310             01468888


Q ss_pred             CCCcEEEEEeCCCc--EEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccc
Q 012721          394 GDGLHFATGSYSNL--LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       394 ~d~~~l~s~~~dg~--i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~  448 (457)
                      +++.++++...|+.  |++|++.++ .....+..+.+.+..+.++|++...+.+.++
T Consensus       345 ~~~~lv~~~~~~g~~~l~~~~~~~g-~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss  400 (710)
T 2xdw_A          345 RSNFLVLCYLHDVKNTLQLHDLATG-ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTS  400 (710)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTTC-CEEEEECCCSSEEEEEECCTTCSEEEEEEEC
T ss_pred             cCCEEEEEEEECCEEEEEEEECCCC-CEEEecCCCCceEEEEecCCCCCEEEEEEeC
Confidence            88888889988885  566777677 4556677777788889999988766654444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=2.9e-13  Score=124.12  Aligned_cols=152  Identities=11%  Similarity=0.044  Sum_probs=92.4

Q ss_pred             CeeEEEeCCCCCEEEEe-CC------C-eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC--
Q 012721          220 NINSISNNSDCETFVSA-DD------L-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--  289 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-~d------~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--  289 (457)
                      .+..++|+|+| +++++ .+      . ...||.++ .++...+        ..+ ..+..+  +|+| +.|+.++.+  
T Consensus       172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l--------~~~-~~~~~~--spdg-~~l~~~~~~~~  237 (347)
T 2gop_A          172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM--------FEK-VSFYAV--DSDG-ERILLYGKPEK  237 (347)
T ss_dssp             TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE--------EEE-ESEEEE--EECS-SCEEEEECCSS
T ss_pred             CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEe--------ccC-cceeeE--CCCC-CEEEEEEcccc
Confidence            67789999999 77776 43      2 44555554 4444332        222 344444  9999 777666543  


Q ss_pred             ------CeEEEEEccCCeeeccccccccccccccCcccceeccccceEE-EEEccCCCeEEEEec-CcEEEEeccCCCCc
Q 012721          290 ------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLSRDY-MNLKLWDIRMDSTP  361 (457)
Q Consensus       290 ------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~  361 (457)
                            ..|.+||  +++..    .+..             +|...+.. +.|+ ++ +++++++ +.++|| +. .++.
T Consensus       238 ~~~~~~~~l~~~d--~~~~~----~l~~-------------~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g~~  294 (347)
T 2gop_A          238 KYMSEHNKLYIYD--GKEVM----GILD-------------EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-DGEI  294 (347)
T ss_dssp             SCCCSSCEEEEEC--SSCEE----ESST-------------TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-SSSE
T ss_pred             CCccccceEEEEC--CCceE----eccc-------------cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-CCce
Confidence                  4678887  43221    1111             22346775 8999 88 7777654 899999 87 3554


Q ss_pred             eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE-EEEecCCCCceeeEEecCCCc
Q 012721          362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL-RIFSHGVGSAGGITVEAGKNE  429 (457)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i-~iw~~~~~~~~~~~~~~~~~~  429 (457)
                      . .+..+...+               .+++|+|  .++++++.++.. .||.+. + + ...+..|...
T Consensus       295 ~-~~~~~~~~v---------------~~~~~s~--~~~~~~~~~~~~~~l~~~~-g-~-~~~lt~~n~~  342 (347)
T 2gop_A          295 K-PIAKGRHWI---------------MGFDVDE--IVVYLKETATRLRELFTWD-G-E-EKQLTDYNDP  342 (347)
T ss_dssp             E-EEECSSSEE---------------EEEEESS--SEEEEEECSSSCCEEEEES-S-S-EEECCCTTST
T ss_pred             E-EEecCCCeE---------------EeeeeeC--cEEEEEcCCCChHHheEeC-C-c-EEEeccccHh
Confidence            3 333333332               5789999  677777777665 777776 5 3 3445555543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=2.1e-12  Score=113.83  Aligned_cols=246  Identities=10%  Similarity=0.033  Sum_probs=162.9

Q ss_pred             CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEE
Q 012721           43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  122 (457)
Q Consensus        43 ~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~  122 (457)
                      .+++|++++.++.|.+||.++++.                           +.++..+..           ..+.++.+ 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~---------------------------~w~~~~~~~-----------~~~~~~~~-   44 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEI---------------------------VWEYPLEKG-----------WECNSVAA-   44 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEE---------------------------EEEEECCTT-----------CCCCEEEE-
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeE---------------------------EEEeCCCcc-----------CCCcCeEE-
Confidence            468999999999999999887774                           344544431           24678888 


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEecc
Q 012721          123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG  202 (457)
Q Consensus       123 ~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  202 (457)
                       .++|++++  +.++.|..||. +++.+..+.                                                
T Consensus        45 -~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~------------------------------------------------   72 (276)
T 3no2_A           45 -TKAGEILF--SYSKGAKMITR-DGRELWNIA------------------------------------------------   72 (276)
T ss_dssp             -CTTSCEEE--ECBSEEEEECT-TSCEEEEEE------------------------------------------------
T ss_pred             -CCCCCEEE--eCCCCEEEECC-CCCEEEEEc------------------------------------------------
Confidence             68998888  45778999998 666543322                                                


Q ss_pred             CccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc
Q 012721          203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (457)
Q Consensus       203 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~  280 (457)
                                  .+....+.++.+.++|+++++. . ++.|..+|..  ++.+..+.... ....+......+++.++| 
T Consensus        73 ------------~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~-~~~~~~~~~~~v~~~~~G-  136 (276)
T 3no2_A           73 ------------APAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFET-GIERPHAQFRQINKNKKG-  136 (276)
T ss_dssp             ------------CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECC-SCSSGGGSCSCCEECTTS-
T ss_pred             ------------CCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccC-CCCcccccccCceECCCC-
Confidence                        1122357788999999999987 6 7788888764  55444443321 111222334556788999 


Q ss_pred             cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCC
Q 012721          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS  359 (457)
Q Consensus       281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~  359 (457)
                      +++++...++.|..||.. ++..    ..+..              .....++...++|++++++.+ +.|..+|..+ +
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~~----w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t-G  196 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQLL----NSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES-N  196 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEE----EEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT-C
T ss_pred             CEEEEecCCCEEEEECCC-CCEE----EEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC-C
Confidence            999999999999999988 6543    22222              123556778899999998876 7899999875 8


Q ss_pred             CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC--------CcEEEEecCCCCceeeEEe
Q 012721          360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d--------g~i~iw~~~~~~~~~~~~~  424 (457)
                      +.+.++........         ....+..+...++|.++++....        +..+++++...++.+-.+.
T Consensus       197 ~~~w~~~~~~~~~~---------~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          197 RIVRRVNANDIEGV---------QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             CEEEEEEGGGSBSC---------CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             cEEEEecCCCCCCc---------cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence            88887764431100         11123578888999988876421        2345666643334444443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.57  E-value=2.9e-12  Score=114.63  Aligned_cols=222  Identities=11%  Similarity=0.045  Sum_probs=147.5

Q ss_pred             CcEEEEEEEecCCCC-EEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                      ....+++|  +++++ +++++..++.|..|+..++ ....                                        
T Consensus        28 ~~~eg~~~--d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~----------------------------------------   64 (296)
T 3e5z_A           28 TWTEGPVY--VPARSAVIFSDVRQNRTWAWSDDGQ-LSPE----------------------------------------   64 (296)
T ss_dssp             SSEEEEEE--EGGGTEEEEEEGGGTEEEEEETTSC-EEEE----------------------------------------
T ss_pred             ccccCCeE--eCCCCEEEEEeCCCCEEEEEECCCC-eEEE----------------------------------------
Confidence            45788999  67887 7778888999999998876 3221                                        


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                                            ..+...+.+++++|+|+++++. .++.|.+||.. .++........   .......+.
T Consensus        65 ----------------------~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~-~g~~~~~~~~~---~~~~~~~~~  118 (296)
T 3e5z_A           65 ----------------------MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP-GGEWESIADSF---EGKKLNSPN  118 (296)
T ss_dssp             ----------------------ESSCSSEEEEEECTTCCEEEEETTTTEEEEECST-TCCEEEEECEE---TTEECCCCC
T ss_pred             ----------------------ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC-CCcEEEEeecc---CCCCCCCCC
Confidence                                  2234568899999999988887 77999999986 34433321100   011123467


Q ss_pred             EEEEecCCccEEEE----Ecc-------------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEE
Q 012721          272 SAEFHPIYCNLLAY----SSS-------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (457)
Q Consensus       272 ~v~~~p~~~~~l~~----~~~-------------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  334 (457)
                      .++++|+| +++++    |..             .+.|..+|.. ++..     .+             ..+......++
T Consensus       119 ~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-----~~-------------~~~~~~~~gi~  178 (296)
T 3e5z_A          119 DVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-----AP-------------IRDRVKPNGLA  178 (296)
T ss_dssp             CEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-----EE-------------ECCCSSEEEEE
T ss_pred             CEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-----Ee-------------ecCCCCCccEE
Confidence            89999999 88887    331             3455555554 3211     11             11234568899


Q ss_pred             EccCCCeEEEEec-CcEEEEeccCCCCc---eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721          335 FANDGQHLLSRDY-MNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  410 (457)
Q Consensus       335 ~s~~g~~l~s~~~-~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i  410 (457)
                      |+|+|+++++.+. +.|++|++...++.   ...+..+....               ..++++++|+++++.  ++.|.+
T Consensus       179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p---------------~~i~~d~~G~l~v~~--~~~v~~  241 (296)
T 3e5z_A          179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKT---------------DGLRVDAGGLIWASA--GDGVHV  241 (296)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCC---------------CSEEEBTTSCEEEEE--TTEEEE
T ss_pred             ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCC---------------CeEEECCCCCEEEEc--CCeEEE
Confidence            9999999865554 89999999632443   22221111111               479999999977666  789999


Q ss_pred             EecCCCCceeeEEecCCCcceeeee-ccCCcceec
Q 012721          411 FSHGVGSAGGITVEAGKNENRKPIL-QAAPRARRS  444 (457)
Q Consensus       411 w~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~~~~  444 (457)
                      |+.. + +....+..+.. +.+++| .|++.....
T Consensus       242 ~~~~-g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v  273 (296)
T 3e5z_A          242 LTPD-G-DELGRVLTPQT-TSNLCFGGPEGRTLYM  273 (296)
T ss_dssp             ECTT-S-CEEEEEECSSC-CCEEEEESTTSCEEEE
T ss_pred             ECCC-C-CEEEEEECCCC-ceeEEEECCCCCEEEE
Confidence            9986 5 56667777777 899999 577764443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=1.5e-12  Score=130.84  Aligned_cols=230  Identities=9%  Similarity=-0.020  Sum_probs=145.4

Q ss_pred             CcEEEEEEEecCCCCEEEE-----eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          114 EKINRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s-----~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                      ..+..++|  ||||++|+.     |+.+..|++||+.+++......                                  
T Consensus       121 ~~~~~~~~--SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~----------------------------------  164 (695)
T 2bkl_A          121 VSLGTWAV--SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV----------------------------------  164 (695)
T ss_dssp             EEEEEEEE--CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC----------------------------------
T ss_pred             EEEEEEEE--CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc----------------------------------
Confidence            46889999  799999984     4456789999999886430000                                  


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCe-------------EEEEEcCCCcce-e
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR-------------INLWNLEISDQC-F  253 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~-------------i~iwd~~~~~~~-~  253 (457)
                                               +..  .....++|+|||+.|+.+ .|..             |++|++.+.... .
T Consensus       165 -------------------------~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~  217 (695)
T 2bkl_A          165 -------------------------IEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT  217 (695)
T ss_dssp             -------------------------BSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE
T ss_pred             -------------------------cCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce
Confidence                                     011  112578999999999887 7665             999999843321 2


Q ss_pred             eeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC----eEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       254 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      .++     ....+...+..+.|+|+| ++|+.++.++    .|.+||..+++.     ..+             ..+...
T Consensus       218 lv~-----~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~l-------------~~~~~~  273 (695)
T 2bkl_A          218 VVH-----ERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF-----RLL-------------VKGVGA  273 (695)
T ss_dssp             EEE-----CCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC-----EEE-------------EECSSC
T ss_pred             EEE-----ecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce-----EEe-------------ecCCCc
Confidence            221     123455678899999999 7777766555    566665544321     111             112234


Q ss_pred             eEEEEEccCCCeEEEEe----cCcEEEEeccCCCCc--eeEeeecc-ccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721          330 ISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP--VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (457)
Q Consensus       330 v~~~~~s~~g~~l~s~~----~~~i~~wd~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  402 (457)
                      +....+ ++|.+++..+    ++.|.+||+.. +..  ...+..+. ..              .+..++|+ ++.++++.
T Consensus       274 ~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~--------------~l~~~~~~-~~~lv~~~  336 (695)
T 2bkl_A          274 KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK-PARASWKEIVPEDSSA--------------SLLSVSIV-GGHLSLEY  336 (695)
T ss_dssp             CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB-CSGGGCEEEECCCSSC--------------EEEEEEEE-TTEEEEEE
T ss_pred             eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC-CCccCCeEEecCCCCC--------------eEEEEEEE-CCEEEEEE
Confidence            555555 6666444443    27899999865 332  23333332 21              01467787 77888999


Q ss_pred             eCCCcEEEEecC-CCCceeeEEecC-CCcceeeeeccCCcceeccccc
Q 012721          403 SYSNLLRIFSHG-VGSAGGITVEAG-KNENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       403 ~~dg~i~iw~~~-~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~  448 (457)
                      ..|+..+||.+. ++ .....+..+ .+.+..+.++|++...+...++
T Consensus       337 ~~dg~~~l~~~~~~g-~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  383 (695)
T 2bkl_A          337 LKDATSEVRVATLKG-KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS  383 (695)
T ss_dssp             EETTEEEEEEEETTC-CEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred             EECCEEEEEEEeCCC-CeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence            999998888765 34 344445544 6677888899988777654443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.53  E-value=1.1e-10  Score=104.34  Aligned_cols=269  Identities=9%  Similarity=0.035  Sum_probs=178.8

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...+.+++++++|++.++...++.|.+|+.. ++..                         . ..+..+.          
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-------------------------~-~~~~~~~----------   61 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-------------------------E-FEVPTPD----------   61 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-------------------------E-EECCCCC----------
Confidence            4578999999999988887778899999976 4321                         0 0111122          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        ..+..+++  .+++.++++...++.|..||.. ++.... ..                                    
T Consensus        62 --~~~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~~------------------------------------   99 (300)
T 2qc5_A           62 --AKVMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEY-PL------------------------------------   99 (300)
T ss_dssp             --CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC------------------------------------
T ss_pred             --CcceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEe-cC------------------------------------
Confidence              45888988  6788777776667889999877 543221 10                                    


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                             ......+.++++.+++.++++. .++.|..||..  +..... .     +......+
T Consensus       100 -----------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~-~-----~~~~~~~~  148 (300)
T 2qc5_A          100 -----------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIYEY-D-----LPNKGSYP  148 (300)
T ss_dssp             -----------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEEEE-E-----CSSTTCCE
T ss_pred             -----------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEEEc-c-----CCCCCCCc
Confidence                                   1123467899999999988888 78999999987  332221 1     22234568


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~  349 (457)
                      ..+++.+++ +++++...++.|..||. .++..     .+..           ..+...+..++++++|++.++... +.
T Consensus       149 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~  210 (300)
T 2qc5_A          149 AFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPL-----------PTNAAAPVGITSGNDGALWFVEIMGNK  210 (300)
T ss_dssp             EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             eeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeC-----------CCCCCCcceEEECCCCCEEEEccCCCE
Confidence            899999999 87777777889999998 44322     1111           111246789999999987776654 78


Q ss_pred             EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCc
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  429 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~  429 (457)
                      |.+||..  ++... +.......             .+..++++++|++.++...++.|..|+. ++......+......
T Consensus       211 i~~~~~~--g~~~~-~~~~~~~~-------------~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~  273 (300)
T 2qc5_A          211 IGRITTT--GEISE-YDIPTPNA-------------RPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAE  273 (300)
T ss_dssp             EEEECTT--CCEEE-EECSSTTC-------------CEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCC
T ss_pred             EEEEcCC--CcEEE-EECCCCCC-------------CceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCc
Confidence            9999983  44332 21111100             1158999999997777666789999998 452232333434566


Q ss_pred             ceeeeeccCCcceecc
Q 012721          430 NRKPILQAAPRARRSS  445 (457)
Q Consensus       430 v~~~~~~p~~~~~~~~  445 (457)
                      +.++++.+++....++
T Consensus       274 ~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          274 PHGITFGKDGSVWFAL  289 (300)
T ss_dssp             CCCEEECTTSCEEEEC
T ss_pred             cceeEeCCCCCEEEEc
Confidence            8889999998766553

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=8.5e-12  Score=113.21  Aligned_cols=249  Identities=9%  Similarity=0.067  Sum_probs=158.1

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      .....+++. +++++++...++.|.+||..+++.                           +.++.. .           
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---------------------------~~~i~~-~-----------   83 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---------------------------VGRITG-F-----------   83 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEEC-C-----------
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---------------------------EEEcCC-C-----------
Confidence            456778885 355566666778999999987764                           233322 1           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                       .....+++  ++++..+++...++.|.+||..+++....+.....                                  
T Consensus        84 -~~p~~i~~--~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~----------------------------------  126 (328)
T 3dsm_A           84 -TSPRYIHF--LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM----------------------------------  126 (328)
T ss_dssp             -SSEEEEEE--EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC----------------------------------
T ss_pred             -CCCcEEEE--eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc----------------------------------
Confidence             45788888  46775444444899999999998876654332110                                  


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                            .+.......+++ .++.++++. . ++.|.++|+. .++....+...        ...
T Consensus       127 ----------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~-t~~~~~~i~~g--------~~p  174 (328)
T 3dsm_A          127 ----------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE-TDKVVDELTIG--------IQP  174 (328)
T ss_dssp             ----------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT-TTEEEEEEECS--------SCB
T ss_pred             ----------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC-CCeEEEEEEcC--------CCc
Confidence                                  011123345566 345555555 3 8999999998 45555443221        234


Q ss_pred             EEEEEecCCccEEEEEccC----------CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          271 TSAEFHPIYCNLLAYSSSR----------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~d----------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                      ..+.++|+| ++++++..+          +.|.++|..+++..    ..+..            ........++|+|+++
T Consensus       175 ~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~------------~~g~~p~~la~~~d~~  237 (328)
T 3dsm_A          175 TSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKF------------KLGDWPSEVQLNGTRD  237 (328)
T ss_dssp             CCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEEC------------CTTCCCEEEEECTTSC
T ss_pred             cceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEec------------CCCCCceeEEEecCCC
Confidence            678899999 777776654          78999999887643    12211            0013578999999999


Q ss_pred             eEEEEecCcEEEEeccCCCCcee-EeeeccccccccccccCCCCccccceEEEcC-CCcEEEEE----eCCCcEEEEecC
Q 012721          341 HLLSRDYMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATG----SYSNLLRIFSHG  414 (457)
Q Consensus       341 ~l~s~~~~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~----~~dg~i~iw~~~  414 (457)
                      +|..++. .|.+||..+ ++... .+.......              ...++++| ++.+.++.    ..++.|.+||..
T Consensus       238 ~lyv~~~-~v~~~d~~t-~~~~~~~~~~~~~~~--------------p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          238 TLYWINN-DIWRMPVEA-DRVPVRPFLEFRDTK--------------YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             EEEEESS-SEEEEETTC-SSCCSSCSBCCCSSC--------------EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             EEEEEcc-EEEEEECCC-CceeeeeeecCCCCc--------------eEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            9988764 899999875 44321 111110110              15799999 45555665    568899999998


Q ss_pred             CCCceeeEEec
Q 012721          415 VGSAGGITVEA  425 (457)
Q Consensus       415 ~~~~~~~~~~~  425 (457)
                       + +.+..+..
T Consensus       302 -g-~~~~~i~~  310 (328)
T 3dsm_A          302 -G-KLIDEFYV  310 (328)
T ss_dssp             -C-CEEEEEEE
T ss_pred             -C-CEEEEEEe
Confidence             6 55555543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=9.1e-12  Score=112.30  Aligned_cols=248  Identities=11%  Similarity=0.127  Sum_probs=156.3

Q ss_pred             CCceEEEEECCCCCEEEE-------EeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeee--eccCCc
Q 012721           32 VDIVSAIEFDKTGDYLAV-------GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEP  102 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~lat-------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~  102 (457)
                      -....+++|+++|.++++       +..++.|.+|+..+++..                         .+..  ..++. 
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------------------~~~~~~~~~~~-   70 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-------------------------VICKPEVNGYG-   70 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-------------------------EEECCEETTEE-
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-------------------------EEEecccCCCC-
Confidence            345689999999998888       677889999997766531                         0000  01122 


Q ss_pred             cccccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEE-EeecCCCceeeeeeccccccccccCCCC
Q 012721          103 EFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (457)
Q Consensus       103 ~~~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (457)
                                 ..+.++++  +++ +.++++ +..+.|.+|+.. ++.... ....  .                     
T Consensus        71 -----------~~~~~i~~--~~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~--~---------------------  112 (314)
T 1pjx_A           71 -----------GIPAGCQC--DRDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDS--E---------------------  112 (314)
T ss_dssp             -----------CCEEEEEE--CSSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCT--T---------------------
T ss_pred             -----------CCCceEEE--ecCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccC--C---------------------
Confidence                       56888998  677 654444 444478889987 654321 1100  0                     


Q ss_pred             CceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC---------------CeEEEE
Q 012721          181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------------LRINLW  244 (457)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------------~~i~iw  244 (457)
                                                        ......+.+++++++|+++++. .+               +.|..|
T Consensus       113 ----------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~  158 (314)
T 1pjx_A          113 ----------------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             ----------------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             ----------------------------------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence                                              1122357889999999888877 54               567777


Q ss_pred             EcCCCcceeeeeecCCCcccCCCCceEEEEEe----cCCccEE-EEEccCCeEEEEEcc-CCeeeccccccccccccccC
Q 012721          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFH----PIYCNLL-AYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHG  318 (457)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~----p~~~~~l-~~~~~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~  318 (457)
                      |..  +.....        ..+......++++    |++ +.| ++...++.|.+||+. .++...  ...+..      
T Consensus       159 ~~~--g~~~~~--------~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~------  219 (314)
T 1pjx_A          159 TTD--GQMIQV--------DTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH------  219 (314)
T ss_dssp             CTT--SCEEEE--------EEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE------
T ss_pred             CCC--CCEEEe--------ccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE------
Confidence            654  333222        1122446789999    998 655 444578999999986 332210  011111      


Q ss_pred             cccceeccc-cceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721          319 SKSFFTEII-ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (457)
Q Consensus       319 ~~~~~~~h~-~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~  396 (457)
                          +.++. .....++++++|+++++.. ++.|.+||.++ ++.+..+..+...+               .+++|+|++
T Consensus       220 ----~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~---------------~~i~~~~dg  279 (314)
T 1pjx_A          220 ----IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKP---------------SNLHFKPQT  279 (314)
T ss_dssp             ----CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCE---------------EEEEECTTS
T ss_pred             ----CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCc---------------eeEEECCCC
Confidence                11122 4567899999998888764 48999999864 55555555443222               589999999


Q ss_pred             cEEE-EEeCCCcEEEEecCCC
Q 012721          397 LHFA-TGSYSNLLRIFSHGVG  416 (457)
Q Consensus       397 ~~l~-s~~~dg~i~iw~~~~~  416 (457)
                      +.|+ +...++.|..|++...
T Consensus       280 ~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          280 KTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             SEEEEEETTTTEEEEEECSSC
T ss_pred             CEEEEEeCCCCeEEEEeCCCC
Confidence            9555 4455688999998753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.52  E-value=1.1e-12  Score=132.65  Aligned_cols=160  Identities=9%  Similarity=-0.012  Sum_probs=95.4

Q ss_pred             CCCCeeEEEeCCCCCEEEEe-CC-----CeEEEEEcCCCc-ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc-
Q 012721          217 HDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-  288 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~-~d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-  288 (457)
                      +...+..+.|+|||++|+.. .+     ..|++||+.... .....       +..+...+... +.|+| ..|+..+. 
T Consensus       266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-------l~~~~~~~~~~-~~~dg-~~l~~~s~~  336 (741)
T 1yr2_A          266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA-------LIPDLKAQWDF-VDGVG-DQLWFVSGD  336 (741)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE-------EECSSSSCEEE-EEEET-TEEEEEECT
T ss_pred             CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE-------ecCCCCceEEE-EeccC-CEEEEEECC
Confidence            33457899999999988876 44     389999998331 20222       22233334444 34888 66666654 


Q ss_pred             ---CCeEEEEEccCCe-eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCcee
Q 012721          289 ---RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  363 (457)
Q Consensus       289 ---dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~  363 (457)
                         ++.|.+||+.++. ..   ..++..             +...+..+.++ ++.++++.. ++..+||.+...++...
T Consensus       337 ~~~~~~l~~~d~~~~~~~~---~~l~~~-------------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~  399 (741)
T 1yr2_A          337 GAPLKKIVRVDLSGSTPRF---DTVVPE-------------SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG  399 (741)
T ss_dssp             TCTTCEEEEEECSSSSCEE---EEEECC-------------CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred             CCCCCEEEEEeCCCCcccc---EEEecC-------------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence               4569999987741 11   012211             22346677777 455666654 47766666543355555


Q ss_pred             Eeeec-cccccccccccCCCCccccceEEEcCCCcEEEE-E---eCCCcEEEEecCCCC
Q 012721          364 TFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-G---SYSNLLRIFSHGVGS  417 (457)
Q Consensus       364 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~---~~dg~i~iw~~~~~~  417 (457)
                      .+..+ ...+               ..++++||+..|+. .   ...++|++||+.+++
T Consensus       400 ~l~~~~~~~v---------------~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          400 AVSLPGIGSA---------------SGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             ECBCSSSCEE---------------EEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             eccCCCCeEE---------------EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            55432 2221               46889999876652 2   235789999998873

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.51  E-value=5.4e-12  Score=116.03  Aligned_cols=269  Identities=9%  Similarity=0.013  Sum_probs=149.9

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        37 ~~~~s~~~~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      .++|+|||++|++++          .++.|.+||..+.+.                           +.++......   
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---------------------------~~~i~~~~~~---  103 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF---------------------------EKEISLPPKR---  103 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE---------------------------EEEEEECTTB---
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE---------------------------EEEEEcCccc---
Confidence            899999999999886          367899999876653                           2222211000   


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEE-EeecCCCceeeeeeccccccccccCCCCCce
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                         .........+++  +++|++|+++..  +++|.+||+.+++.... +.....   ..+.+.+.....+       . 
T Consensus       104 ---~~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~---~~v~~~p~~~~~~-------~-  167 (361)
T 2oiz_A          104 ---VQGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC---WSVIPQPNRPRSF-------M-  167 (361)
T ss_dssp             ---CCBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE---EEEEECTTSSSEE-------E-
T ss_pred             ---cccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc---ceeEEcCCCCeeE-------E-
Confidence               000023556888  799999998864  68999999998866543 221110   0011111000000       0 


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeE-------EEeCCCCCEEEEe-CCCeEEEEEcCCCcc-eee
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS-------ISNNSDCETFVSA-DDLRINLWNLEISDQ-CFN  254 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~-------~~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~  254 (457)
                           ....++.+.+++.+...  +.....   +...+..       +.+++++..++.. .++.|.++|+..... ...
T Consensus       168 -----~~~~dg~~~~v~~~~~g--~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~  237 (361)
T 2oiz_A          168 -----TICGDGGLLTINLGEDG--KVASQS---RSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG  237 (361)
T ss_dssp             -----EEETTSSEEEEEECTTS--SEEEEE---ECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred             -----EECCCCcEEEEEECCCC--cEeeec---cccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence                 11223456666653211  111000   1001100       1123455566655 788999999873221 111


Q ss_pred             eeecCCCc-ccC--CCCceEEEEEecCCccEEEEEcc-----------CCeEEEEEccCCeeeccccccccccccccCcc
Q 012721          255 IVDMKPSN-MDD--LTEVITSAEFHPIYCNLLAYSSS-----------RGFVRLVDMRQSALCDHSARILRDAAESHGSK  320 (457)
Q Consensus       255 ~~~~~~~~-~~~--~~~~i~~v~~~p~~~~~l~~~~~-----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  320 (457)
                      .+...... ...  .......++|+|++ ..++++..           ++.|.+||+.+++..    ..+..        
T Consensus       238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg-~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v----~~i~~--------  304 (361)
T 2oiz_A          238 PWSLLNDEDKAKNWVPGGYNLVGLHRAS-GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV----ARIPG--------  304 (361)
T ss_dssp             EEESCCHHHHHTTCEECCSSCEEEETTT-TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE----EEEEC--------
T ss_pred             cccccCccccccccccCCeeEEEEecCC-CeEEEEEccCCCcccccCCCceEEEEECCCCcEE----EEEec--------
Confidence            11111000 000  00111236899998 55554432           358999999998654    33333        


Q ss_pred             cceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEEcCCCc
Q 012721          321 SFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  397 (457)
Q Consensus       321 ~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~  397 (457)
                           + . ..+++|+|+|++|++++++.|.+||..+ +  +.+..+.......               ..++++|||.
T Consensus       305 -----~-~-p~~ia~spdg~~l~v~n~~~v~v~D~~t-~~l~~~~~i~~~G~~P---------------~~~~~~p~G~  360 (361)
T 2oiz_A          305 -----R-D-ALSMTIDQQRNLMLTLDGGNVNVYDISQ-PEPKLLRTIEGAAEAS---------------LQVQFHPVGG  360 (361)
T ss_dssp             -----T-T-CCEEEEETTTTEEEEECSSCEEEEECSS-SSCEEEEEETTSCSSE---------------EEEEECCCSC
T ss_pred             -----C-C-eeEEEECCCCCEEEEeCCCeEEEEECCC-CcceeeEEeccCCCCc---------------EEEEecCCCC
Confidence                 2 2 8899999999999987679999999986 7  7777763322211               4799999985

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.49  E-value=2.8e-13  Score=126.49  Aligned_cols=176  Identities=14%  Similarity=0.011  Sum_probs=108.2

Q ss_pred             EEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE-------------------EEEecCCccE
Q 012721          223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-------------------AEFHPIYCNL  282 (457)
Q Consensus       223 ~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------v~~~p~~~~~  282 (457)
                      .+.|+|||+.|+.+ .++.|++||+. .++...+..       .+......                   +.|+|++ +.
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~-~~~~~~~~~-------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~  155 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLE-TLEEQVIYT-------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SW  155 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETT-TCCEEEEEE-------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECC-CCCcEEEEe-------cccccCCCCCEEEeccCCccccccccccccCCCC-cc
Confidence            47899999999887 88899999998 454444422       12221111                   2456666 44


Q ss_pred             EEEE-----ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEec-------Cc
Q 012721          283 LAYS-----SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-------MN  349 (457)
Q Consensus       283 l~~~-----~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~-------~~  349 (457)
                      ++..     ..+..|.+||+.+++..    .+.              .+...+..+.|+| +++.|+..++       ..
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~--------------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~  217 (396)
T 3c5m_A          156 EKFAEFYHTNPTCRLIKVDIETGELE----VIH--------------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDAR  217 (396)
T ss_dssp             HHHHHHHHTCCCEEEEEEETTTCCEE----EEE--------------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCC
T ss_pred             eeeeeeccCCCcceEEEEECCCCcEE----eec--------------cCCcccccceECCCCCCEEEEEecCCCCCCCce
Confidence            4433     35567899998876432    111              1245688999999 7887775432       35


Q ss_pred             EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-----CcEEEEecCCCCceeeEEe
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~  424 (457)
                      |.+||+.. ++ ...+..+....             .+..++|+|||++|+.++.+     +.|++||+.+++ ......
T Consensus       218 l~~~d~~~-~~-~~~l~~~~~~~-------------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~  281 (396)
T 3c5m_A          218 MWLVNEDG-SN-VRKIKEHAEGE-------------SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE-NEEVMV  281 (396)
T ss_dssp             CEEEETTS-CC-CEESSCCCTTE-------------EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC-EEEEEE
T ss_pred             EEEEECCC-Cc-eeEeeccCCCc-------------cccceEECCCCCEEEEEecCCCCccceEEEEECCCCC-eEEeee
Confidence            78888753 33 22332221110             11478999999988877654     449999999883 322222


Q ss_pred             cCCCcceeeeecc-CCcceec
Q 012721          425 AGKNENRKPILQA-APRARRS  444 (457)
Q Consensus       425 ~~~~~v~~~~~~p-~~~~~~~  444 (457)
                      . .. .. +.|+| ++.....
T Consensus       282 ~-~~-~~-~~~s~~dg~~l~~  299 (396)
T 3c5m_A          282 M-PP-CS-HLMSNFDGSLMVG  299 (396)
T ss_dssp             C-CS-EE-EEEECSSSSEEEE
T ss_pred             C-CC-CC-CCccCCCCceEEE
Confidence            1 11 22 88999 9885554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.47  E-value=2.7e-11  Score=106.75  Aligned_cols=220  Identities=9%  Similarity=0.004  Sum_probs=152.3

Q ss_pred             CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCc
Q 012721          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (457)
Q Consensus       125 ~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  204 (457)
                      ..+++|++++.|+.|.+||.++|+.+..+.                                                  
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--------------------------------------------------   32 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYP--------------------------------------------------   32 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEE--------------------------------------------------
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeC--------------------------------------------------
Confidence            346789999999999999998887654432                                                  


Q ss_pred             cccccceeeccCCC-CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEE
Q 012721          205 VHARCQKVYPHAHD-FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  283 (457)
Q Consensus       205 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l  283 (457)
                                 .+. ..+.++.+.|+|++++ +.++.|..||.. .+ .+..+..      +....+.++.+.++| +++
T Consensus        33 -----------~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~-G~-~~W~~~~------~~~~~~~~~~~~~dG-~~l   91 (276)
T 3no2_A           33 -----------LEKGWECNSVAATKAGEILF-SYSKGAKMITRD-GR-ELWNIAA------PAGCEMQTARILPDG-NAL   91 (276)
T ss_dssp             -----------CCTTCCCCEEEECTTSCEEE-ECBSEEEEECTT-SC-EEEEEEC------CTTCEEEEEEECTTS-CEE
T ss_pred             -----------CCccCCCcCeEECCCCCEEE-eCCCCEEEECCC-CC-EEEEEcC------CCCccccccEECCCC-CEE
Confidence                       121 3577889999999888 556789999984 44 4433211      123467889999999 888


Q ss_pred             EEEcc-CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCc
Q 012721          284 AYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP  361 (457)
Q Consensus       284 ~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~  361 (457)
                      ++.+. ++.|..+|. .++..    ..+..   ...    ...+......+++.++|+++++... +.|..||.+  ++.
T Consensus        92 v~~~~~~~~v~~vd~-~Gk~l----~~~~~---~~~----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~  157 (276)
T 3no2_A           92 VAWCGHPSTILEVNM-KGEVL----SKTEF---ETG----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQL  157 (276)
T ss_dssp             EEEESTTEEEEEECT-TSCEE----EEEEE---CCS----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCE
T ss_pred             EEecCCCCEEEEEeC-CCCEE----EEEec---cCC----CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCE
Confidence            88776 788888886 44432    11111   000    0111123445678899999998865 999999985  788


Q ss_pred             eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC------Ccceeeee
Q 012721          362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK------NENRKPIL  435 (457)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~------~~v~~~~~  435 (457)
                      +.++......                ..+.+.++|+++++++.+++|..+|..+| +.+..+..+.      ..+..+..
T Consensus       158 ~w~~~~~~~~----------------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~l~~~~~~~~  220 (276)
T 3no2_A          158 LNSVKLSGTP----------------FSSAFLDNGDCLVACGDAHCFVQLNLESN-RIVRRVNANDIEGVQLFFVAQLFP  220 (276)
T ss_dssp             EEEEECSSCC----------------CEEEECTTSCEEEECBTTSEEEEECTTTC-CEEEEEEGGGSBSCCCSEEEEEEE
T ss_pred             EEEEECCCCc----------------cceeEcCCCCEEEEeCCCCeEEEEeCcCC-cEEEEecCCCCCCccccccccceE
Confidence            8887765332                47888899999999998889999999999 5555554332      12566666


Q ss_pred             ccCCcceeccc
Q 012721          436 QAAPRARRSSL  446 (457)
Q Consensus       436 ~p~~~~~~~~~  446 (457)
                      .+++.......
T Consensus       221 ~~~G~i~v~~~  231 (276)
T 3no2_A          221 LQNGGLYICNW  231 (276)
T ss_dssp             CTTSCEEEEEE
T ss_pred             cCCCCEEEEec
Confidence            77776666643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.46  E-value=3.4e-11  Score=109.25  Aligned_cols=225  Identities=12%  Similarity=-0.034  Sum_probs=146.1

Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      ....+.+   .++.++++...++.|.+||..+++....+.                                        
T Consensus        45 ~~~~i~~---~~~~lyv~~~~~~~v~viD~~t~~~~~~i~----------------------------------------   81 (328)
T 3dsm_A           45 VAQSMVI---RDGIGWIVVNNSHVIFAIDINTFKEVGRIT----------------------------------------   81 (328)
T ss_dssp             CEEEEEE---ETTEEEEEEGGGTEEEEEETTTCCEEEEEE----------------------------------------
T ss_pred             cceEEEE---ECCEEEEEEcCCCEEEEEECcccEEEEEcC----------------------------------------
Confidence            3567777   245566666678999999999887654431                                        


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v  273 (457)
                                            .......++++++++.+++. .++.|.+||.. ..+....+....  ..+.......+
T Consensus        82 ----------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~--~~~~~~~p~~i  136 (328)
T 3dsm_A           82 ----------------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK-TYEITGYIECPD--MDMESGSTEQM  136 (328)
T ss_dssp             ----------------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETT-TTEEEEEEECTT--CCTTTCBCCCE
T ss_pred             ----------------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECC-CCeEEEEEEcCC--ccccCCCcceE
Confidence                                  12356788898888766666 89999999998 555554443221  01111244566


Q ss_pred             EEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c----
Q 012721          274 EFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y----  347 (457)
Q Consensus       274 ~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~----  347 (457)
                      ++ .++ .++++.. .++.|.++|+.+++..    ..+..              ......+.++|+|++++++. +    
T Consensus       137 ~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~----~~i~~--------------g~~p~~i~~~~dG~l~v~~~~~~~~~  196 (328)
T 3dsm_A          137 VQ-YGK-YVYVNCWSYQNRILKIDTETDKVV----DELTI--------------GIQPTSLVMDKYNKMWTITDGGYEGS  196 (328)
T ss_dssp             EE-ETT-EEEEEECTTCCEEEEEETTTTEEE----EEEEC--------------SSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred             EE-ECC-EEEEEcCCCCCEEEEEECCCCeEE----EEEEc--------------CCCccceEEcCCCCEEEEECCCccCC
Confidence            66 444 5555554 5899999999987644    22221              12346788999999777653 2    


Q ss_pred             ------CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee-
Q 012721          348 ------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-  420 (457)
Q Consensus       348 ------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~-  420 (457)
                            +.|.++|..+ ++....+....+..+              ..++|+||+++|+.+..  .|.+||..+++... 
T Consensus       197 ~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p--------------~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~  259 (328)
T 3dsm_A          197 PYGYEAPSLYRIDAET-FTVEKQFKFKLGDWP--------------SEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR  259 (328)
T ss_dssp             SSCBCCCEEEEEETTT-TEEEEEEECCTTCCC--------------EEEEECTTSCEEEEESS--SEEEEETTCSSCCSS
T ss_pred             ccccCCceEEEEECCC-CeEEEEEecCCCCCc--------------eeEEEecCCCEEEEEcc--EEEEEECCCCceeee
Confidence                  5799999875 666655543321111              58999999999888765  89999998884321 


Q ss_pred             eEEecCCCcceeeeeccC-Ccceec
Q 012721          421 ITVEAGKNENRKPILQAA-PRARRS  444 (457)
Q Consensus       421 ~~~~~~~~~v~~~~~~p~-~~~~~~  444 (457)
                      ..+.........++++|+ +....+
T Consensus       260 ~~~~~~~~~p~gi~vdp~~g~lyva  284 (328)
T 3dsm_A          260 PFLEFRDTKYYGLTVNPNNGEVYVA  284 (328)
T ss_dssp             CSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred             eeecCCCCceEEEEEcCCCCeEEEE
Confidence            112222456788999994 444444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.46  E-value=1.1e-10  Score=104.34  Aligned_cols=233  Identities=9%  Similarity=0.056  Sum_probs=147.7

Q ss_pred             ceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           34 IVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        34 ~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      -.-+..|+++ +.++++...++.|..|+..+++..                            .+. ..           
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----------------------------~~~-~~-----------   53 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----------------------------RVT-MD-----------   53 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----------------------------EEE-CS-----------
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----------------------------EEe-CC-----------
Confidence            4567889995 456667677889999998766421                            111 12           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                       ..+.++++  +++|+++++ . ++.|.+||..+++...+.....                                   
T Consensus        54 -~~~~~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~-----------------------------------   93 (297)
T 3g4e_A           54 -APVSSVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN-----------------------------------   93 (297)
T ss_dssp             -SCEEEEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT-----------------------------------
T ss_pred             -CceEEEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC-----------------------------------
Confidence             56889999  688885554 4 5679999988876544322110                                   


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC---------CeEEEEEcCCCcceeeeeecCCCc
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                                            ......++.++++|+|+++++. .+         ..-.+|.+...+.....       
T Consensus        94 ----------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-------  144 (297)
T 3g4e_A           94 ----------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY-------  144 (297)
T ss_dssp             ----------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-------
T ss_pred             ----------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-------
Confidence                                  0112357889999999977765 32         33455555433333222       


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEcc--CCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                       .........++|+|++..++++.+.++.|.+||+.  ++....  .+.+..          +..+......++++++|+
T Consensus       145 -~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~----------~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          145 -FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK----------LEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             -EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE----------CCGGGCEEEEEEEBTTSC
T ss_pred             -eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE----------CCCCCCCCCeeEECCCCC
Confidence             11234567899999993344666678999999973  443211  011111          111234578899999998


Q ss_pred             eEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc-CCCcEEEEEeC
Q 012721          341 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY  404 (457)
Q Consensus       341 ~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~~~  404 (457)
                      +.++... +.|..||..+ ++.+..+..+...+               ++++|. ||++.|+..+.
T Consensus       212 lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~~---------------t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          212 LWVACYNGGRVIRLDPVT-GKRLQTVKLPVDKT---------------TSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEETTTEEEEECTTT-CCEEEEEECSSSBE---------------EEEEEESGGGCEEEEEEB
T ss_pred             EEEEEcCCCEEEEEcCCC-ceEEEEEECCCCCc---------------eEEEEeCCCCCEEEEEcC
Confidence            7777654 8899999875 77777777654332               689998 88776655543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.43  E-value=7e-11  Score=103.93  Aligned_cols=224  Identities=8%  Similarity=0.008  Sum_probs=145.0

Q ss_pred             cEEEEEEEecCCCCEEE-EeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          115 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ...++++  ++++.+++ +...++.|.+|+..++......                                        
T Consensus        25 ~p~~i~~--~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~----------------------------------------   62 (270)
T 1rwi_B           25 SPSGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTTVLP----------------------------------------   62 (270)
T ss_dssp             CEEEEEE--CTTCCEEEEECSSSCEEEEECC-----EECC----------------------------------------
T ss_pred             CccceEE--CCCCCEEEEccCCCCcEEEecCCCcccceEe----------------------------------------
Confidence            5788998  68888777 5467889999986554321100                                        


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v  273 (457)
                                           ..+...+.+++++++++++++..++.|.+||.. ..... .+      .......+..+
T Consensus        63 ---------------------~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~-~~~~~-~~------~~~~~~~p~~i  113 (270)
T 1rwi_B           63 ---------------------FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG-SNNQT-VL------PFDGLNYPEGL  113 (270)
T ss_dssp             ---------------------CCSCCSCCCEEECTTCCEEEEETTTEEEEECTT-CSCCE-EC------CCCSCSSEEEE
T ss_pred             ---------------------eCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC-CceEe-ee------ecCCcCCCcce
Confidence                                 122235678999999986555578899999987 33222 21      11223568899


Q ss_pred             EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEE
Q 012721          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL  352 (457)
Q Consensus       274 ~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~  352 (457)
                      +++++| +++++...++.|.+|+..+....      ...           ......+..++++++|+++++... +.|.+
T Consensus       114 ~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~------~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~  175 (270)
T 1rwi_B          114 AVDTQG-AVYVADRGNNRVVKLAAGSKTQT------VLP-----------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVK  175 (270)
T ss_dssp             EECTTC-CEEEEEGGGTEEEEECTTCCSCE------ECC-----------CCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred             EECCCC-CEEEEECCCCEEEEEECCCceeE------eec-----------cccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence            999998 88887778899999976543211      000           001235678999999987766654 89999


Q ss_pred             EeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCccee
Q 012721          353 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  432 (457)
Q Consensus       353 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~  432 (457)
                      ||... .........+...               ...++++++|.++++...++.|.+|+.... ........+...+..
T Consensus       176 ~~~~~-~~~~~~~~~~~~~---------------p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~p~~  238 (270)
T 1rwi_B          176 LEAES-NNQVVLPFTDITA---------------PWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TSTVLPFTGLNTPLA  238 (270)
T ss_dssp             ECTTT-CCEEECCCSSCCS---------------EEEEEECTTCCEEEEETTTSCEEEECTTCS-CCEECCCCSCSCEEE
T ss_pred             EecCC-CceEeecccCCCC---------------ceEEEECCCCCEEEEECCCCcEEEEcCCCC-cceeeccCCCCCcee
Confidence            99864 3322111111111               158999999987777777899999998765 322222234456789


Q ss_pred             eeeccCCcceec
Q 012721          433 PILQAAPRARRS  444 (457)
Q Consensus       433 ~~~~p~~~~~~~  444 (457)
                      +++.|++....+
T Consensus       239 i~~~~~g~l~v~  250 (270)
T 1rwi_B          239 VAVDSDRTVYVA  250 (270)
T ss_dssp             EEECTTCCEEEE
T ss_pred             EEECCCCCEEEE
Confidence            999999875555

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.43  E-value=7.6e-10  Score=101.82  Aligned_cols=255  Identities=11%  Similarity=0.043  Sum_probs=152.4

Q ss_pred             EECCCCCEEEEEeC--CC---eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721           39 EFDKTGDYLAVGDR--GG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (457)
Q Consensus        39 ~~s~~~~~latg~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  113 (457)
                      ...|+++++.+...  ..   +|.+||..+++.                           +..+....            
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~---------------------------~~~i~~g~------------   67 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---------------------------LGHVNGGF------------   67 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE---------------------------EEEecCCC------------
Confidence            44578887777653  22   789999887663                           22232222            


Q ss_pred             CcEEEEEEEecCCCCEEEEee----------CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          114 EKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                      .+  .+.+  +|++++++.+.          .++.|.+||..+.+....+......                        
T Consensus        68 ~p--~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~------------------------  119 (373)
T 2mad_H           68 LP--NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP------------------------  119 (373)
T ss_pred             CC--CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc------------------------
Confidence            22  7888  79999988875          3678999999877665543321000                        


Q ss_pred             eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C--CCeEEEEEcCCCcceeee-eecC
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMK  259 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~  259 (457)
                                                 +   ..+...-..+.++|||++|+.+ .  ++.|.++| . .++.... +...
T Consensus       120 ---------------------------~---~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~-t~~~~~~~i~~~  167 (373)
T 2mad_H          120 ---------------------------R---FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q-GGSSDDQLLSSP  167 (373)
T ss_pred             ---------------------------c---cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C-CCCEEeEEcCCC
Confidence                                       0   0011233478999999999887 3  58899999 7 5555544 3221


Q ss_pred             CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc--ccccc------cc----ccc----------
Q 012721          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA--RILRD------AA----ESH----------  317 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~--~~~~~------~~----~~~----------  317 (457)
                                 .++.+.|++...+++.+.||.+.++|. +++......  ..+..      +.    ...          
T Consensus       168 -----------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  235 (373)
T 2mad_H          168 -----------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK  235 (373)
T ss_pred             -----------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce
Confidence                       124455555455566667777777777 543321000  00000      00    000          


Q ss_pred             -----------Cccccee----------ccccceEEEEEccCCCeEEEEe-----------cCcEEEEeccCCCCceeEe
Q 012721          318 -----------GSKSFFT----------EIIASISDIKFANDGQHLLSRD-----------YMNLKLWDIRMDSTPVATF  365 (457)
Q Consensus       318 -----------~~~~~~~----------~h~~~v~~~~~s~~g~~l~s~~-----------~~~i~~wd~~~~~~~~~~~  365 (457)
                                 .....+.          -.......+.++|+++.+..+.           .+.|.++|+.+ .+.+..+
T Consensus       236 v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i  314 (373)
T 2mad_H          236 ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQI  314 (373)
T ss_pred             EEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEE
Confidence                       0000000          0012233477899988777642           15799999986 7777777


Q ss_pred             eeccccccccccccCCCCccccceEEEcCCCc-EEEEEe-CCCcEEEEecCCCCceeeE
Q 012721          366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVGSAGGIT  422 (457)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~-~dg~i~iw~~~~~~~~~~~  422 (457)
                      ......                ..+.|+|||+ .++++. .++.|.+||+.++ +....
T Consensus       315 ~~g~~p----------------~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~  356 (373)
T 2mad_H          315 SLGHDV----------------DAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQS  356 (373)
T ss_pred             ECCCCc----------------CeEEECCCCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence            644433                5899999999 777777 4899999999999 44444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=3.8e-11  Score=121.53  Aligned_cols=232  Identities=13%  Similarity=0.075  Sum_probs=142.5

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCC-----CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          114 EKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                      ..+..++|  ||||++|+.++.+     ..|++||+.+++......                                  
T Consensus       163 ~~~~~~~~--SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~----------------------------------  206 (741)
T 1yr2_A          163 TALDAWAA--SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL----------------------------------  206 (741)
T ss_dssp             EEEEEEEE--CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----------------------------------
T ss_pred             EEEEeEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----------------------------------
Confidence            35788999  7999999887543     469999999887643210                                  


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCC--------------eEEEEEcCCCcce-
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--------------RINLWNLEISDQC-  252 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~--------------~i~iwd~~~~~~~-  252 (457)
                                                  +...+..++|+|| +.|+.+ .++              .|++|++.+.... 
T Consensus       207 ----------------------------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~  257 (741)
T 1yr2_A          207 ----------------------------KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD  257 (741)
T ss_dssp             ----------------------------EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC
T ss_pred             ----------------------------CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC
Confidence                                        0112346789999 888776 544              3899998733221 


Q ss_pred             eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC-----eEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (457)
Q Consensus       253 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  327 (457)
                      ..++.     ...+...+..+.|+|+| ++|+..+.++     .|.+||+.++...  ....+..             +.
T Consensus       258 ~lv~~-----~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~l~~-------------~~  316 (741)
T 1yr2_A          258 QPVFA-----TPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIG--PVTALIP-------------DL  316 (741)
T ss_dssp             EEEEC-----CTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEEC--CCEEEEC-------------SS
T ss_pred             EEEec-----cCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCc--ccEEecC-------------CC
Confidence            22211     12333458899999999 8777776543     8999998775210  0011111             12


Q ss_pred             cceEEEEEccCCCeEEEEec-----CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721          328 ASISDIKFANDGQHLLSRDY-----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~~-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  402 (457)
                      ..+... ++|+|+.|+..++     +.|.+||+.........+..+....              +..++|+ ++.++++.
T Consensus       317 ~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~--------------l~~~~~~-~~~lv~~~  380 (741)
T 1yr2_A          317 KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN--------------LESVGIA-GNRLFASY  380 (741)
T ss_dssp             SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE--------------EEEEEEE-BTEEEEEE
T ss_pred             CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe--------------EEEEEEE-CCEEEEEE
Confidence            233333 3488888876542     5588999864212223332222211              1356776 66788888


Q ss_pred             eCCCcEEEEecC-CCCceeeEEec-CCCcceeeeeccCCcceeccccc
Q 012721          403 SYSNLLRIFSHG-VGSAGGITVEA-GKNENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       403 ~~dg~i~iw~~~-~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~  448 (457)
                      ..|+..+||.+. ++ .....+.. +.+.+..+.++|++...+...++
T Consensus       381 ~~dg~~~l~~~~~~g-~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  427 (741)
T 1yr2_A          381 IHDAKSQVLAFDLDG-KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSS  427 (741)
T ss_dssp             EETTEEEEEEEETTS-CEEEECBCSSSCEEEEEECCBTCSCEEEEEEE
T ss_pred             EECCEEEEEEEeCCC-CceeeccCCCCeEEEEeecCCCCCEEEEEEcC
Confidence            999988777665 34 34444543 36678888999998776654443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.42  E-value=9.3e-10  Score=98.13  Aligned_cols=239  Identities=8%  Similarity=-0.002  Sum_probs=157.1

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...+.+++++++|.++++...++.|..|+.+ ++..                         . ..+....          
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-------------------------~-~~~~~~~----------   98 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIK-------------------------E-YTLPNPD----------   98 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE-------------------------E-EeCCCcC----------
Confidence            4678999999999988887778889999865 2210                         0 0111122          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        ..+..+++  .+++.++++...++.|.+|+. +++......                                     
T Consensus        99 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-------------------------------------  136 (299)
T 2z2n_A           99 --SAPYGITE--GPNGDIWFTEMNGNRIGRITD-DGKIREYEL-------------------------------------  136 (299)
T ss_dssp             --CCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEEC-------------------------------------
T ss_pred             --CCceeeEE--CCCCCEEEEecCCceEEEECC-CCCEEEecC-------------------------------------
Confidence              45888998  678877777777888999987 554332110                                     


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                             ......+..+++.+++.++++. .++.|..||..  +..... .     .......+
T Consensus       137 -----------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~-~-----~~~~~~~~  185 (299)
T 2z2n_A          137 -----------------------PNKGSYPSFITLGSDNALWFTENQNNAIGRITES--GDITEF-K-----IPTPASGP  185 (299)
T ss_dssp             -----------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEE-E-----CSSTTCCE
T ss_pred             -----------------------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCC--CcEEEe-e-----CCCCCCcc
Confidence                                   1233467899999999888887 78999999983  333222 1     22334568


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCc
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN  349 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~  349 (457)
                      ..++++++| .++++...++.|.+||. +++..     .+..           ..+...+.+++++++|++.++.. ++.
T Consensus       186 ~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~  247 (299)
T 2z2n_A          186 VGITKGNDD-ALWFVEIIGNKIGRITT-SGEIT-----EFKI-----------PTPNARPHAITAGAGIDLWFTEWGANK  247 (299)
T ss_dssp             EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred             eeEEECCCC-CEEEEccCCceEEEECC-CCcEE-----EEEC-----------CCCCCCceeEEECCCCCEEEeccCCce
Confidence            899999998 87777777889999998 55322     1111           11235688999999998766653 489


Q ss_pred             EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      |..||..  ++ +..+.......             .+.++++ +++.+.++.. .+.|..++.+++
T Consensus       248 i~~~d~~--g~-~~~~~~~~~~~-------------~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          248 IGRLTSN--NI-IEEYPIQIKSA-------------EPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEEEETT--TE-EEEEECSSSSC-------------CEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             EEEECCC--Cc-eEEEeCCCCCC-------------ccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            9999983  33 33332211110             1157888 8888776655 567777887765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.40  E-value=1.8e-10  Score=103.35  Aligned_cols=239  Identities=9%  Similarity=-0.008  Sum_probs=152.3

Q ss_pred             ccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      ............|+|+|+ +++++..++.|..|+.. ++.                            ..+..+.     
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~----------------------------~~~~~~~-----   85 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV----------------------------DVLLDAT-----   85 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE----------------------------EEEEESC-----
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE----------------------------EEEeCCC-----
Confidence            334566778899999998 66777788899999863 321                            1233333     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                             ..+..+++  +++|+++++...++.|.+|+.. ++.........                             
T Consensus        86 -------~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~-----------------------------  126 (305)
T 3dr2_A           86 -------AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA-----------------------------  126 (305)
T ss_dssp             -------SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECEET-----------------------------
T ss_pred             -------CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC-----------------------------
Confidence                   55888999  7889876665566889999875 54332211000                             


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE----e-C-------------CCeEEEEEcCC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEI  248 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~-~-------------d~~i~iwd~~~  248 (457)
                                                  ......++.++++|+|+++++    | .             .+.|+.||.. 
T Consensus       127 ----------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-  177 (305)
T 3dr2_A          127 ----------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-  177 (305)
T ss_dssp             ----------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-
T ss_pred             ----------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-
Confidence                                        011234678899999998886    3 2             2567777765 


Q ss_pred             CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC------CeEEEEEccCCeeeccccccccccccccCcccc
Q 012721          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (457)
                      .++...+        . .......++|+|++ +.|+.+...      +.|.+||+..+.+.  ..+.+..          
T Consensus       178 ~g~~~~~--------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~--~~~~~~~----------  235 (305)
T 3dr2_A          178 GSPLQRM--------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALH--DRRHFAS----------  235 (305)
T ss_dssp             SCCCEEE--------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEE--EEEEEEC----------
T ss_pred             CCcEEEE--------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCcc--CCeEEEE----------
Confidence            3333322        1 22456789999999 766666554      78999998765311  0111111          


Q ss_pred             eeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721          323 FTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (457)
Q Consensus       323 ~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  402 (457)
                        ........++++++|++.++. .+.|.+|+..  ++.+..+..+...                .+++|+++++.|..+
T Consensus       236 --~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~----------------~~~~f~~d~~~L~it  294 (305)
T 3dr2_A          236 --VPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTA----------------SNCTFDQAQQRLFIT  294 (305)
T ss_dssp             --CSSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEEE
T ss_pred             --CCCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCce----------------eEEEEeCCCCEEEEE
Confidence              011334568899999955554 4559999984  6777777655432                589999999888888


Q ss_pred             eCCCcEEEEe
Q 012721          403 SYSNLLRIFS  412 (457)
Q Consensus       403 ~~dg~i~iw~  412 (457)
                      +.++ ++.++
T Consensus       295 ~~~~-l~~~~  303 (305)
T 3dr2_A          295 GGPC-LWMLP  303 (305)
T ss_dssp             ETTE-EEEEE
T ss_pred             cCCe-EEEEE
Confidence            7764 43333

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.40  E-value=4.2e-11  Score=120.05  Aligned_cols=246  Identities=11%  Similarity=0.085  Sum_probs=147.1

Q ss_pred             cCCceEEEEECCCCCEEEEE-----eCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVG-----DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      |...+..++|||||++||.+     +....|++||+.+++..                          ...+.+      
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------------------------~~~~~~------  174 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL--------------------------ETPLKD------  174 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE--------------------------EEEEEE------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC--------------------------ccccCC------
Confidence            55679999999999999853     33357999999988742                          001111      


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCe-------------EEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~-------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (457)
                              .....++|  + |++.|+.++.+..             |++|++.++.....                    
T Consensus       175 --------~k~~~~~W--s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--------------------  223 (693)
T 3iuj_A          175 --------VKFSGISW--L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR--------------------  223 (693)
T ss_dssp             --------EESCCCEE--E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE--------------------
T ss_pred             --------ceeccEEE--e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccce--------------------
Confidence                    11246789  7 8888888877643             66666554321110                    


Q ss_pred             ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccC-CCCCeeEEEeCCCCCEEEEe-----CCCeEEEEEc
Q 012721          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-----DDLRINLWNL  246 (457)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-----~d~~i~iwd~  246 (457)
                                                          .+... .. |...+..+.|+|||++|+..     .++.|+++|+
T Consensus       224 ------------------------------------~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  266 (693)
T 3iuj_A          224 ------------------------------------LVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDL  266 (693)
T ss_dssp             ------------------------------------EEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEET
T ss_pred             ------------------------------------EEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEEC
Confidence                                                00000 22 44457789999999988653     2358999999


Q ss_pred             CCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---CeEEEEEccCCeeeccccccccccccccCcccce
Q 012721          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (457)
                      .........       +..+....... ++++|..+++....+   +.|..+|+.++...  ..+.             +
T Consensus       267 ~~~~~~~~~-------l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--~~~~-------------l  323 (693)
T 3iuj_A          267 SQENAPLLT-------VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--HWRD-------------L  323 (693)
T ss_dssp             TSTTCCCEE-------EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEE-------------E
T ss_pred             CCCCCceEE-------EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--ccEE-------------E
Confidence            743322322       23344444444 666663555555543   67899998875321  0011             1


Q ss_pred             eccccceEEEEEccCCCeEEEEe--c--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEE
Q 012721          324 TEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  399 (457)
Q Consensus       324 ~~h~~~v~~~~~s~~g~~l~s~~--~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  399 (457)
                      ..|...+.  .|++++++|+...  +  ..|++||+.  +.....+......              .+..+.+++++..|
T Consensus       324 ~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l~~p~~~--------------~~~~~~~~~d~~~l  385 (693)
T 3iuj_A          324 IPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREVALPGLG--------------SVSGFNGKHDDPAL  385 (693)
T ss_dssp             ECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEECCSSSS--------------EEEECCCCTTCSCE
T ss_pred             ecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEeecCCCc--------------eEEeeecCCCCCEE
Confidence            22233443  8899999888653  3  378889886  4444444322211              01356677888766


Q ss_pred             EEEeCC----CcEEEEecCCCC
Q 012721          400 ATGSYS----NLLRIFSHGVGS  417 (457)
Q Consensus       400 ~s~~~d----g~i~iw~~~~~~  417 (457)
                      +....+    ++|+.||+.+++
T Consensus       386 ~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          386 YFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEecCCCCCCEEEEEECCCCe
Confidence            655444    789999998873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.40  E-value=1.4e-10  Score=104.53  Aligned_cols=227  Identities=11%  Similarity=0.041  Sum_probs=148.0

Q ss_pred             CcEEEEEEEecCCCCEEEE-------eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          114 EKINRVRWCAAPNGSMFIL-------STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s-------~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                      ....+++|  ++++.++++       ...++.|.+|+..+++...... .  .                           
T Consensus        18 ~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~--~---------------------------   65 (314)
T 1pjx_A           18 PGAEGPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-P--E---------------------------   65 (314)
T ss_dssp             TTCEEEEE--CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-C--E---------------------------
T ss_pred             CCccCceE--CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-c--c---------------------------
Confidence            34678999  678877777       5778899999987776543210 0  0                           


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEeCCCeEEEEEcCCCcceeee-eecCCCccc
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSADDLRINLWNLEISDQCFNI-VDMKPSNMD  264 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~  264 (457)
                                                 ..++...+.+++++++ ++++++..++.|.+||.+  ++.... ....   ..
T Consensus        66 ---------------------------~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~--g~~~~~~~~~~---~~  113 (314)
T 1pjx_A           66 ---------------------------VNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD--GTFEEIAKKDS---EG  113 (314)
T ss_dssp             ---------------------------ETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT--SCEEECCSBCT---TS
T ss_pred             ---------------------------cCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC--CCEEEEEeccC---CC
Confidence                                       0123446889999999 776666655589999987  333222 1100   01


Q ss_pred             CCCCceEEEEEecCCccEEEEEccC---------------CeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSR---------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~d---------------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      .....+.+++++++| +++++...+               +.|..||.. ++..    ....              +...
T Consensus       114 ~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~----~~~~--------------~~~~  173 (314)
T 1pjx_A          114 RRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI----QVDT--------------AFQF  173 (314)
T ss_dssp             CBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE----EEEE--------------EESS
T ss_pred             ccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE----Eecc--------------CCCC
Confidence            122457899999999 877776655               567777755 3221    1111              1234


Q ss_pred             eEEEEEc----cCCCeEEEE-e-cCcEEEEeccCCCCc-----eeEeeecc-ccccccccccCCCCccccceEEEcCCCc
Q 012721          330 ISDIKFA----NDGQHLLSR-D-YMNLKLWDIRMDSTP-----VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGL  397 (457)
Q Consensus       330 v~~~~~s----~~g~~l~s~-~-~~~i~~wd~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~  397 (457)
                      ...++|+    |+++.|+.+ . ++.|.+||....++.     ...+..+. ..               ...++++++|+
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------p~~i~~d~~G~  238 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG---------------ADGMDFDEDNN  238 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE---------------EEEEEEBTTCC
T ss_pred             cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC---------------CCceEECCCCC
Confidence            6788999    999766654 3 389999998622321     11121111 11               14789999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCc
Q 012721          398 HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  440 (457)
Q Consensus       398 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  440 (457)
                      ++++...++.|.+||..++ +....+..+...+.+++++|++.
T Consensus       239 l~v~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~i~~~~dg~  280 (314)
T 1pjx_A          239 LLVANWGSSHIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             EEEEEETTTEEEEECTTCB-SCSEEEECSSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCEEEEEcCCCC-cEeEEEeCCCCCceeEEECCCCC
Confidence            8888888899999999877 44555666667889999999987

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.39  E-value=1.1e-09  Score=102.17  Aligned_cols=269  Identities=10%  Similarity=0.052  Sum_probs=159.1

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      -.....|+|+++++++++...++.|++||.+++...                           ..... .          
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------------~~~~~-~----------  171 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------------TVHPG-F----------  171 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------EEEET-C----------
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------Eeecc-C----------
Confidence            357889999999998888777889999998866531                           11111 1          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                        .... ++|  +++++.|+++..++  .|.+|+...+........                                  
T Consensus       172 --~~~~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~----------------------------------  212 (409)
T 3hrp_A          172 --KGGK-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ----------------------------------  212 (409)
T ss_dssp             --CBCB-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE----------------------------------
T ss_pred             --CCCc-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEeee----------------------------------
Confidence              2233 888  78888888887765  687777765543221100                                  


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                             ........+.+++++|++..|+.+ .++.|+.||.. .+.. ..+...  ...+...
T Consensus       213 -----------------------~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~-~~~~-~~~~~~--~~~g~~~  265 (409)
T 3hrp_A          213 -----------------------LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK-TQEV-TLIKQL--ELSGSLG  265 (409)
T ss_dssp             -----------------------CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT-TCCE-EEEEEC--CCCSCCC
T ss_pred             -----------------------ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC-CCCE-EEEecc--cccCCCC
Confidence                                   001133456789999955555557 88999999998 3332 222000  0111212


Q ss_pred             ce-E-EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcc--cceeccccceEEEEEccCCCeEEE
Q 012721          269 VI-T-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK--SFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       269 ~i-~-~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      .- . .++|+|++..++++-..++.|+.|+.....      ..+..+.......  ......-.....++++|+|+++++
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva  339 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV  339 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence            22 3 899999542777777788999999976531      1111100000000  000001134789999999997777


Q ss_pred             Ee-c-CcEEEEeccCCCCceeEeeeccccccccccccCC-CCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          345 RD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN-DSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       345 ~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                      -. . +.|+.|++.. +. +..+.++....... +.... ........+++++++.++++-..+++|+.+++
T Consensus       340 d~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~-~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          340 DGFKGYCLRKLDILD-GY-VSTVAGQVDVASQI-DGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ETTTTCEEEEEETTT-TE-EEEEEECTTCBSCC-CBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCEEEEEECCC-CE-EEEEeCCCCCCCcC-CCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            66 5 8999999753 43 44444441110000 00000 00111258999999888888888888988775

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=1.9e-11  Score=111.63  Aligned_cols=192  Identities=9%  Similarity=0.064  Sum_probs=126.2

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      ..++.+++++...++++|+.++ +++|+++.....         +..                    -..+|......++
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~---------~~~--------------------~~~~~~~~~~~~l   87 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDH---------ITS--------------------DSTPLTFKWEKEI   87 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHH---------HHS--------------------SSCCCCCSEEEEC
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhh---------hcc--------------------ccccccceEEeeC
Confidence            3799999999999999999985 777998754410         000                    0000111111222


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                      .. |+.|+|    ++..|+++ .++.|++||+.........                                       
T Consensus        88 p~-V~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~~---------------------------------------  122 (388)
T 1xip_A           88 PD-VIFVCF----HGDQVLVS-TRNALYSLDLEELSEFRTV---------------------------------------  122 (388)
T ss_dssp             TT-EEEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEEE---------------------------------------
T ss_pred             CC-eeEEEE----CCCEEEEE-cCCcEEEEEchhhhccCcc---------------------------------------
Confidence            26 999999    67788888 8899999998765422111                                       


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                                            ..|...+.++.+.+..  ++++ .||.|.+||+. .+....           +...|+
T Consensus       123 ----------------------~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~-~~~~~~-----------~~~~Vs  166 (388)
T 1xip_A          123 ----------------------TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR-TKSTKQ-----------LAQNVT  166 (388)
T ss_dssp             ----------------------EECSSCEEEEEECSSE--EEEEETTSEEEEEETT-TCCEEE-----------EEESEE
T ss_pred             ----------------------ceeecceeeEEecCCC--EEEEECCCCEEEEEcc-CCcccc-----------ccCCce
Confidence                                  2344456777665442  7777 99999999998 444332           235799


Q ss_pred             EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      |++|+|+|   ++.|..||++++|+....+...+  +.+..   .+.. ..-.+|...|.++.|.++++++++
T Consensus       167 ~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k--~~I~~---Pp~~-~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          167 SFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQ--FEFSL---PSEL-EELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEECSSE---EEEEETTSCEEEEEEETTEEEEE--EEECC---CHHH-HTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEEcCCc---eEEEEcCCcEEEEcCCCcccccc--ceecC---Cccc-ccccCCCeeEEEEEEecCCeEEEE
Confidence            99999998   67788999999998877652100  11111   0000 000135678999999999999986

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.38  E-value=1.3e-09  Score=99.19  Aligned_cols=273  Identities=12%  Similarity=0.047  Sum_probs=163.6

Q ss_pred             EEECCCCCEEEEEeC-----CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           38 IEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        38 ~~~s~~~~~latg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      ....|+++.+++...     ++.|.++|..+.+.                           +.++..-.           
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------------~~~I~vG~-----------   79 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------------IGMIDGGF-----------   79 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------------EEEEEECS-----------
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------------EEEEECCC-----------
Confidence            456799988888765     67899999887763                           23333222           


Q ss_pred             cCcEEEEEEEecCCCCEEEEee----------CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          113 EEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                       .+ . +.+  +|+|++++++.          .++.|.+||..+++....+.......                      
T Consensus        80 -~P-~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r----------------------  132 (386)
T 3sjl_D           80 -LP-N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR----------------------  132 (386)
T ss_dssp             -SC-E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC----------------------
T ss_pred             -CC-c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc----------------------
Confidence             33 3 888  89999887765          36789999999988766554321000                      


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C--CCeEEEEEcCCCcceeeeeecC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMK  259 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~  259 (457)
                                                      ......-..++++|||++++.+ .  ++.|.++|+. ..+.+..+.+.
T Consensus       133 --------------------------------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~-t~~vv~tI~v~  179 (386)
T 3sjl_D          133 --------------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDVP  179 (386)
T ss_dssp             --------------------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECC
T ss_pred             --------------------------------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC-CCcEEEEEECC
Confidence                                            0011234578999999998876 3  6899999999 56666654322


Q ss_pred             CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC-Ceeeccccccccc-------cc--cccCcccc-------
Q 012721          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRD-------AA--ESHGSKSF-------  322 (457)
Q Consensus       260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~-------~~--~~~~~~~~-------  322 (457)
                           +      +....|.+...+++.+.||.+.+.++.. ++........+..       +.  ..+..+..       
T Consensus       180 -----g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~  248 (386)
T 3sjl_D          180 -----D------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGK  248 (386)
T ss_dssp             -----S------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSE
T ss_pred             -----C------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCE
Confidence                 1      1122343334555666666666666654 3321100001100       00  00000000       


Q ss_pred             ---eec-----------------------cccceEEEEEccCCCeEEEEe-----------cCcEEEEeccCCCCceeEe
Q 012721          323 ---FTE-----------------------IIASISDIKFANDGQHLLSRD-----------YMNLKLWDIRMDSTPVATF  365 (457)
Q Consensus       323 ---~~~-----------------------h~~~v~~~~~s~~g~~l~s~~-----------~~~i~~wd~~~~~~~~~~~  365 (457)
                         +..                       .......++++++++.++...           .+.|.+.|+.+ .+.+..+
T Consensus       249 V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i  327 (386)
T 3sjl_D          249 IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKF  327 (386)
T ss_dssp             EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEE
T ss_pred             EEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEE
Confidence               000                       011222366677777666542           14688888876 6777776


Q ss_pred             eeccccccccccccCCCCccccceEEEcCCCc-EEEEEe-CCCcEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721          366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                      ......                .++.+++|++ +|++.. .++.|.++|..++ +....+.. .+.-+.+.+++|
T Consensus       328 ~vg~~~----------------~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~~-~~~p~~l~~s~d  384 (386)
T 3sjl_D          328 EMGHEI----------------DSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQ-LGHGPQVITTAD  384 (386)
T ss_dssp             EEEEEE----------------CEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEECC-CCSSCCEEEECC
T ss_pred             ECCCCc----------------ceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEecC-CCCCceeEECCc
Confidence            654332                5899999996 666654 4899999999999 55555543 455667777777

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.35  E-value=6.9e-10  Score=99.10  Aligned_cols=184  Identities=7%  Similarity=0.047  Sum_probs=117.2

Q ss_pred             CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---------
Q 012721          219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---------  289 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---------  289 (457)
                      ..+.+++++++++++++. ++.|.+||.+ .+....+....   .......+..++++|+| +++++....         
T Consensus        54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~-~g~~~~~~~~~---~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~  127 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI-GTKFCALNWK-EQSAVVLATVD---NDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLER  127 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE-TTEEEEEETT-TTEEEEEEECC---TTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCT
T ss_pred             CceEEEEECCCCCEEEEE-CCeEEEEECC-CCcEEEEEecC---CCCCCCCCCCEEECCCC-CEEEecCCcccccccccC
Confidence            468899999999955544 5689999987 44433322111   01123457899999999 766654321         


Q ss_pred             CeEEEEEccCC-eeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ec-CcEEEEecc-CCCCce--e
Q 012721          290 GFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIR-MDSTPV--A  363 (457)
Q Consensus       290 g~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~-~~i~~wd~~-~~~~~~--~  363 (457)
                      ..-.||.+... +..    ....              +......++|+|+++.|+.+ +. +.|.+|++. ..+...  .
T Consensus       128 ~~~~l~~~d~~g~~~----~~~~--------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~  189 (297)
T 3g4e_A          128 HQGALYSLFPDHHVK----KYFD--------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR  189 (297)
T ss_dssp             TCEEEEEECTTSCEE----EEEE--------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE
T ss_pred             CCcEEEEEECCCCEE----EEee--------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE
Confidence            22344444322 111    1111              12346789999999987655 33 899999974 223321  1


Q ss_pred             Ee---eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec-cCC
Q 012721          364 TF---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ-AAP  439 (457)
Q Consensus       364 ~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~-p~~  439 (457)
                      .+   ..+....               ..+++.++|++.++....+.|.+||..++ +....+..+...+.+++|. |++
T Consensus       190 ~~~~~~~~~~~p---------------~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~~p~~~~t~~~f~g~d~  253 (297)
T 3g4e_A          190 SVYKLEKEEQIP---------------DGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVKLPVDKTTSCCFGGKNY  253 (297)
T ss_dssp             EEEECCGGGCEE---------------EEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEECSSSBEEEEEEESGGG
T ss_pred             EEEECCCCCCCC---------------CeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEECCCCCceEEEEeCCCC
Confidence            11   1111111               47899999998888878889999999988 6677777777789999998 776


Q ss_pred             cce
Q 012721          440 RAR  442 (457)
Q Consensus       440 ~~~  442 (457)
                      ...
T Consensus       254 ~~L  256 (297)
T 3g4e_A          254 SEM  256 (297)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.34  E-value=2.2e-09  Score=99.34  Aligned_cols=88  Identities=11%  Similarity=0.114  Sum_probs=64.1

Q ss_pred             EEEEccCCCeEEEEe-----------cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EE
Q 012721          332 DIKFANDGQHLLSRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HF  399 (457)
Q Consensus       332 ~~~~s~~g~~l~s~~-----------~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l  399 (457)
                      .++++|+++.++...           .+.|.++|..+ .+.+..+......                ..+.|+||++ ++
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~~l  385 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEPLL  385 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEE
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCEEE
Confidence            468999988776542           24799999986 7888887655433                5899999999 88


Q ss_pred             EEEe-CCCcEEEEecCCCCceeeEE-ecCCCcceeeeeccCC
Q 012721          400 ATGS-YSNLLRIFSHGVGSAGGITV-EAGKNENRKPILQAAP  439 (457)
Q Consensus       400 ~s~~-~dg~i~iw~~~~~~~~~~~~-~~~~~~v~~~~~~p~~  439 (457)
                      ++.. .++.|.++|+.++ +....+ ..-..|  .+..+||.
T Consensus       386 yv~n~~s~~VsVID~~t~-kvv~tI~~vG~~P--~~i~~~~~  424 (426)
T 3c75_H          386 YALSAGTQTLHIYDAATG-EELRSVDQLGRGP--QIITTHDM  424 (426)
T ss_dssp             EEEETTTTEEEEEETTTC-CEEEEECCCSSSC--CEEECCCC
T ss_pred             EEEcCCCCeEEEEECCCC-CEEEEecCCCCCC--cEEEcCCC
Confidence            8888 4899999999999 555554 222222  25666653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.33  E-value=4.6e-10  Score=102.45  Aligned_cols=266  Identities=7%  Similarity=-0.001  Sum_probs=160.1

Q ss_pred             CceEEEEECCCCCEEEEEe--CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      ..+..++++++|+++++..  .++.++||.+++++..                   .-|...  ....+|.         
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-------------------~~p~~~--~~~~~~~---------   66 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-------------------PFPPQS--GNAIITF---------   66 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-------------------ESCCCC--SSCCCCC---------
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-------------------cCCCcc--cCcccce---------
Confidence            5789999999999998864  2343677777633321                   000000  0111222         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeC-----CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                         ..+..+++  ++++.++++-..     ++.|.+||+.+++....+......                          
T Consensus        67 ---~~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~--------------------------  115 (343)
T 2qe8_A           67 ---DTVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI--------------------------  115 (343)
T ss_dssp             ---SCEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT--------------------------
T ss_pred             ---eEeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh--------------------------
Confidence               57899999  678866555433     578999999888765544322100                          


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-----CCCeEEEEEcCCCcceeeeeecCC
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                                                   ..+...+..+++++++..++.+     .++.|.+||+. .++..+.+    
T Consensus       116 -----------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~-~g~~~r~~----  161 (343)
T 2qe8_A          116 -----------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ-TGLAARVL----  161 (343)
T ss_dssp             -----------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT-TCCEEEEC----
T ss_pred             -----------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC-CCCEEEEe----
Confidence                                         1233456789998865555444     36899999998 55555442    


Q ss_pred             CcccCCCCceE-EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721          261 SNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (457)
Q Consensus       261 ~~~~~~~~~i~-~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g  339 (457)
                         .+|..... ...+.++| ..+.+.+.+|.++.|.                               ..+..++|+|+|
T Consensus       162 ---~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~-------------------------------~~~~gia~s~dg  206 (343)
T 2qe8_A          162 ---QGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH-------------------------------LGVNGIVLDAEN  206 (343)
T ss_dssp             ---TTCTTTSCCSCCCEETT-EECBEECTTSCEECCC-------------------------------CCEEEEEECTTS
T ss_pred             ---cCCCcccccccceeECC-EEEEeccCCCceecee-------------------------------cccceeEeccCC
Confidence               22211100 13455677 6777777777765542                               135779999999


Q ss_pred             CeEEEEec--CcEEEEeccC--CCC-----cee--EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721          340 QHLLSRDY--MNLKLWDIRM--DST-----PVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  408 (457)
Q Consensus       340 ~~l~s~~~--~~i~~wd~~~--~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i  408 (457)
                      +.|+.++.  ..+..++...  .+.     ...  ...++....               ..++++++|.++++...++.|
T Consensus       207 ~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p---------------dgia~d~~G~l~va~~~~~~V  271 (343)
T 2qe8_A          207 EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC---------------DGISIDKDHNIYVGDLAHSAI  271 (343)
T ss_dssp             CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC---------------SCEEECTTCCEEEEEGGGTEE
T ss_pred             CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC---------------ceEEECCCCCEEEEccCCCeE
Confidence            98887754  4555554321  011     000  111121111               369999999999998889999


Q ss_pred             EEEecCCCCceeeEEec-CCCcceeeeeccCCcceec
Q 012721          409 RIFSHGVGSAGGITVEA-GKNENRKPILQAAPRARRS  444 (457)
Q Consensus       409 ~iw~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~  444 (457)
                      .+||..++ +....... +......+++.|++.....
T Consensus       272 ~~~d~~~G-~~~~~~~~~~~~~p~~va~~~~g~l~v~  307 (343)
T 2qe8_A          272 GVITSADR-AYKLLVTDEKLSWTDSFNFGSDGYLYFD  307 (343)
T ss_dssp             EEEETTTT-EEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred             EEEECCCC-CEEEEEECCceecCCeeEECCCCcEEEE
Confidence            99998566 33333322 2455788999988765554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.32  E-value=6.7e-11  Score=107.98  Aligned_cols=145  Identities=8%  Similarity=0.021  Sum_probs=96.9

Q ss_pred             CCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721          216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (457)
Q Consensus       216 ~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw  295 (457)
                      .+.. |+.++|  ++.+|+++.++.|++||+....+.. .       ...|...+.++.+.+.   .++++..||.|.+|
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~-~-------~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~  151 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFR-T-------VTSFEKPVFQLKNVNN---TLVILNSVNDLSAL  151 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEE-E-------EEECSSCEEEEEECSS---EEEEEETTSEEEEE
T ss_pred             eCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccC-c-------cceeecceeeEEecCC---CEEEEECCCCEEEE
Confidence            3455 999999  8999999988999999998433222 1       2345566777766543   38888999999999


Q ss_pred             EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCc--eeEeeecccccc
Q 012721          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP--VATFKIHEHLRP  373 (457)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~--~~~~~~~~~~~~  373 (457)
                      |+..+...    .                 +...|++++|||+| +.+...+|.+++|+... ...  ...+........
T Consensus       152 dl~~~~~~----~-----------------~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~-~~~~~k~~I~~Pp~~~~  208 (388)
T 1xip_A          152 DLRTKSTK----Q-----------------LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRN-GEMEKQFEFSLPSELEE  208 (388)
T ss_dssp             ETTTCCEE----E-----------------EEESEEEEEECSSE-EEEEETTSCEEEEEEET-TEEEEEEEECCCHHHHT
T ss_pred             EccCCccc----c-----------------ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCC-ccccccceecCCccccc
Confidence            99976432    1                 12579999999999 33344569999998864 332  334422110000


Q ss_pred             ccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721          374 KLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                            +.+.-+.|.++.|.+++.++++-.
T Consensus       209 ------~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          209 ------LPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             ------SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             ------ccCCCeeEEEEEEecCCeEEEEEc
Confidence                  000112347999999999998743

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.31  E-value=9.1e-09  Score=91.68  Aligned_cols=237  Identities=8%  Similarity=-0.005  Sum_probs=154.4

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...+.+++++++|++.++...++.|..|+.. ++..                          ...+....          
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~--------------------------~~~~~~~~----------  103 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT--------------------------EYPLPQPD----------  103 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--------------------------EEECSSTT----------
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE--------------------------EecCCCCC----------
Confidence            3678999999999988877767889999876 3320                          01111112          


Q ss_pred             ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (457)
                        ..+.++++  .+++.++++...++.|..|+.. ++..... .                                    
T Consensus       104 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~------------------------------------  141 (300)
T 2qc5_A          104 --SGPYGITE--GLNGDIWFTQLNGDRIGKLTAD-GTIYEYD-L------------------------------------  141 (300)
T ss_dssp             --CCEEEEEE--CSTTCEEEEETTTTEEEEECTT-SCEEEEE-C------------------------------------
T ss_pred             --CCCccceE--CCCCCEEEEccCCCeEEEECCC-CCEEEcc-C------------------------------------
Confidence              45788988  6788877777667889888876 5433211 0                                    


Q ss_pred             cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                             ......+..+++.++++++++. .++.|..||..  +..... .     .......+
T Consensus       142 -----------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~~-~-----~~~~~~~~  190 (300)
T 2qc5_A          142 -----------------------PNKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLEEY-P-----LPTNAAAP  190 (300)
T ss_dssp             -----------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEEE-E-----CSSTTCCE
T ss_pred             -----------------------CCCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEEEe-e-----CCCCCCCc
Confidence                                   1223467889999999977777 68899999984  333222 1     22344568


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  349 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~  349 (457)
                      ..++++++| .++++....+.|.+||. .++..     .+..           ..+...+.+++++++|++.++... +.
T Consensus       191 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~  252 (300)
T 2qc5_A          191 VGITSGNDG-ALWFVEIMGNKIGRITT-TGEIS-----EYDI-----------PTPNARPHAITAGKNSEIWFTEWGANQ  252 (300)
T ss_dssp             EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred             ceEEECCCC-CEEEEccCCCEEEEEcC-CCcEE-----EEEC-----------CCCCCCceEEEECCCCCEEEeccCCCe
Confidence            899999998 88877777888999998 33221     1111           011346789999999986666644 89


Q ss_pred             EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      |..||..  ++.. .+.......             .+.++++.++|.+.++.. . .|..++.+
T Consensus       253 i~~~~~~--g~~~-~~~~~~~~~-------------~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          253 IGRITND--NTIQ-EYQLQTENA-------------EPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEEECTT--SCEE-EEECCSTTC-------------CCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             EEEECCC--CcEE-EEECCccCC-------------ccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            9999973  3322 332211100             115799999998666555 4 67777653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=2.6e-09  Score=96.72  Aligned_cols=228  Identities=11%  Similarity=0.017  Sum_probs=141.1

Q ss_pred             ceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           34 IVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        34 ~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      -.....|+|++ .++++...++.|..|+..+++..                            .+. ..           
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----------------------------~~~-~~-----------   89 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT----------------------------VHA-LP-----------   89 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----------------------------EEE-CS-----------
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----------------------------EEE-CC-----------
Confidence            34678999974 56666667889999998765421                            111 12           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                       ..+.++.|  +++|.++++. .+ .|.+||..+++.........                                   
T Consensus        90 -~~v~~i~~--~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~-----------------------------------  129 (326)
T 2ghs_A           90 -FMGSALAK--ISDSKQLIAS-DD-GLFLRDTATGVLTLHAELES-----------------------------------  129 (326)
T ss_dssp             -SCEEEEEE--EETTEEEEEE-TT-EEEEEETTTCCEEEEECSST-----------------------------------
T ss_pred             -CcceEEEE--eCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCC-----------------------------------
Confidence             45889999  5678666654 44 48899988776543321000                                   


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC------CeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                            ......++.++++|+|+++++. .+      +.|..++   .++....        ..
T Consensus       130 ----------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~---~g~~~~~--------~~  176 (326)
T 2ghs_A          130 ----------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA---KGKVTKL--------FA  176 (326)
T ss_dssp             ----------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE---TTEEEEE--------EE
T ss_pred             ----------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe---CCcEEEe--------eC
Confidence                                  0112357889999999977765 32      4555555   3433222        11


Q ss_pred             CCCceEEEEEecCCccEE-EEEccCCeEEEEEcc--CC-eeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721          266 LTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMR--QS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l-~~~~~dg~i~lwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~  341 (457)
                      .......++|+|++ +.| ++.+.++.|.+||+.  ++ +...  .+.+..          +.........++++++|.+
T Consensus       177 ~~~~~~~i~~s~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~--~~~~~~----------~~~~~~~p~gi~~d~~G~l  243 (326)
T 2ghs_A          177 DISIPNSICFSPDG-TTGYFVDTKVNRLMRVPLDARTGLPTGK--AEVFID----------STGIKGGMDGSVCDAEGHI  243 (326)
T ss_dssp             EESSEEEEEECTTS-CEEEEEETTTCEEEEEEBCTTTCCBSSC--CEEEEE----------CTTSSSEEEEEEECTTSCE
T ss_pred             CCcccCCeEEcCCC-CEEEEEECCCCEEEEEEcccccCCcccC--ceEEEE----------CCCCCCCCCeeEECCCCCE
Confidence            22346789999999 655 455567899999986  44 2111  011111          0111234678999999987


Q ss_pred             EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc-CCCcEEEEEeC
Q 012721          342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY  404 (457)
Q Consensus       342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~~~  404 (457)
                      .++... +.|..||..  ++.+..+..+...+               ++++|+ +++..|+.++.
T Consensus       244 wva~~~~~~v~~~d~~--g~~~~~i~~~~~~~---------------~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          244 WNARWGEGAVDRYDTD--GNHIARYEVPGKQT---------------TCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEETTTEEEEECTT--CCEEEEEECSCSBE---------------EEEEEESTTSCEEEEEEB
T ss_pred             EEEEeCCCEEEEECCC--CCEEEEEECCCCCc---------------EEEEEecCCCCEEEEEec
Confidence            776644 889999983  66666665544322               689998 88876655544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=2e-09  Score=100.46  Aligned_cols=242  Identities=10%  Similarity=0.036  Sum_probs=145.6

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      .....|+|  +++++++++...++.|++||..++.......                                       
T Consensus       131 ~~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~---------------------------------------  169 (409)
T 3hrp_A          131 KYMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHP---------------------------------------  169 (409)
T ss_dssp             CCEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------------------------------------
T ss_pred             CCceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeec---------------------------------------
Confidence            45788999  6888877777778999999998776554321                                       


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCC--eEEEEEcCCCcceeeeeecCCCcccC-CCCc
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDD-LTEV  269 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~  269 (457)
                                            . ..... ++|+++++.|+++ .++  .|.+|+... +.....+.    .+.. ....
T Consensus       170 ----------------------~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~-~~~~~~~g----~~~~~~~~~  220 (409)
T 3hrp_A          170 ----------------------G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS-GWAPTRIG----QLGSTFSGK  220 (409)
T ss_dssp             ----------------------T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG-TTCEEEEE----ECCTTSCSC
T ss_pred             ----------------------c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC-CceeEEee----eccchhcCC
Confidence                                  1 11223 8899999988887 544  899998873 32222210    0111 3456


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc--eEEEEEccCCCeEE-EEe
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS--ISDIKFANDGQHLL-SRD  346 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~s~~g~~l~-s~~  346 (457)
                      +.+++++|++ ..|+++..++.|+.||..++..     ..+.. ...       .++...  ...++|+|++..|. +..
T Consensus       221 p~~iav~p~~-g~lyv~d~~~~I~~~d~~~~~~-----~~~~~-~~~-------~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          221 IGAVALDETE-EWLYFVDSNKNFGRFNVKTQEV-----TLIKQ-LEL-------SGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             CCBCEECTTS-SEEEEECTTCEEEEEETTTCCE-----EEEEE-CCC-------CSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             cEEEEEeCCC-CeEEEEECCCcEEEEECCCCCE-----EEEec-ccc-------cCCCCCCccccEEEeCCCCEEEEEeC
Confidence            7889999954 3444477789999999987642     12211 000       001111  23899999644554 444


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCCCceeeEEe
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      . +.|+.|+..  +. +..+.++.....................++++|+|+++++-. .+++|+.|++.++ . ..++.
T Consensus       287 ~~~~I~~~~~~--g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G-~-v~~~~  361 (409)
T 3hrp_A          287 NLSSVYKITPD--GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG-Y-VSTVA  361 (409)
T ss_dssp             TTTEEEEECTT--CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT-E-EEEEE
T ss_pred             CCCEEEEEecC--CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC-E-EEEEe
Confidence            4 889999875  33 333433320000000000000000125899999999877777 7899999998877 2 44455


Q ss_pred             cC---------------CCcceeeeeccCCcceec
Q 012721          425 AG---------------KNENRKPILQAAPRARRS  444 (457)
Q Consensus       425 ~~---------------~~~v~~~~~~p~~~~~~~  444 (457)
                      ++               ......+++.|++.....
T Consensus       362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa  396 (409)
T 3hrp_A          362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA  396 (409)
T ss_dssp             ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred             CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence            44               245678888888766555

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.27  E-value=1.3e-09  Score=99.20  Aligned_cols=263  Identities=12%  Similarity=0.118  Sum_probs=146.1

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        37 ~~~~s~~~~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      .++++|||++|++++          .++.|.+||..+.+..                           .++.-...    
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~---------------------------~~I~v~~g----  130 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------------------------ADIELPDA----  130 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTC----
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE---------------------------EEEECCCc----
Confidence            499999999887765          3578999999887642                           22210000    


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                       +.......-..+.|  +++|++++++..  ++.|.++|+.+++....+.....    ...+......++        ..
T Consensus       131 -~r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----~~~~P~g~~~~~--------~~  195 (386)
T 3sjl_D          131 -PRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----YHIFPTAPDTFF--------MH  195 (386)
T ss_dssp             -CCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEE--------EE
T ss_pred             -cccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----ceeecCCCceeE--------EE
Confidence             00000012345788  799999888764  68999999999988777654321    011110000011        11


Q ss_pred             ccCCccccccceEEEeccCccccccce-eeccCCCCCee-EEEe-CCCCCEEEEeCCCeEEEEEcCCCcc-eeeeeec-C
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQK-VYPHAHDFNIN-SISN-NSDCETFVSADDLRINLWNLEISDQ-CFNIVDM-K  259 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~h~~~v~-~~~~-~~~~~~l~~~~d~~i~iwd~~~~~~-~~~~~~~-~  259 (457)
                      .      .++.+.+.+........... ..+.....++. ...| .++|++++.+.++.|++.|+..... ....+.+ .
T Consensus       196 ~------~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~  269 (386)
T 3sjl_D          196 C------RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT  269 (386)
T ss_dssp             E------TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred             C------CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccc
Confidence            1      12233333332211100000 01011112222 2355 4688777766889999999973221 1211110 0


Q ss_pred             CCcc-cC-CCCceEEEEEecCCccEEEEEcc----------CCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721          260 PSNM-DD-LTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (457)
Q Consensus       260 ~~~~-~~-~~~~i~~v~~~p~~~~~l~~~~~----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  327 (457)
                      .... .+ ..+....+++++++ +.++....          .+.|.++|+.+++..    +.+..              .
T Consensus       270 ~~~~~~g~~p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~----~~i~v--------------g  330 (386)
T 3sjl_D          270 EAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL----AKFEM--------------G  330 (386)
T ss_dssp             HHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----EEEEE--------------E
T ss_pred             cccccccccCCCcceeeECCCC-CeEEEEeccccccccCCCCCEEEEEECCCCeEE----EEEEC--------------C
Confidence            0000 00 11223356778988 65555432          257999999998755    33332              2


Q ss_pred             cceEEEEEccCCC-eEEEEe--cCcEEEEeccCCCCceeEeeecccc
Q 012721          328 ASISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATFKIHEHL  371 (457)
Q Consensus       328 ~~v~~~~~s~~g~-~l~s~~--~~~i~~wd~~~~~~~~~~~~~~~~~  371 (457)
                      ..++.|.+++|++ +|++.+  ++.|.++|..+ ++.+.++......
T Consensus       331 ~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t-~k~~~~i~~~~~p  376 (386)
T 3sjl_D          331 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEELRSVNQLGHG  376 (386)
T ss_dssp             EEECEEEECSSSSCEEEEEETTTTEEEEEETTT-CCEEEEECCCCSS
T ss_pred             CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC-CcEEEEecCCCCC
Confidence            3688999999997 666654  49999999986 8888888765554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.25  E-value=5.6e-09  Score=94.48  Aligned_cols=181  Identities=14%  Similarity=0.100  Sum_probs=114.1

Q ss_pred             CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc------CCeE
Q 012721          219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS------RGFV  292 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~------dg~i  292 (457)
                      ..+.+++++++++++++..+ .|.+||.. .+....+....   .......+.+++++|+| +++++...      .+.|
T Consensus        90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~-~g~~~~~~~~~---~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l  163 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIASDD-GLFLRDTA-TGVLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSI  163 (326)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETT-TCCEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEE
T ss_pred             CcceEEEEeCCCeEEEEECC-CEEEEECC-CCcEEEEeeCC---CCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEE
Confidence            36888999999988776644 49999987 44433322111   01122468899999999 76665432      2455


Q ss_pred             EEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEecc-CCC-Cce--eEee
Q 012721          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR-MDS-TPV--ATFK  366 (457)
Q Consensus       293 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~-~~~-~~~--~~~~  366 (457)
                      ..+|  .++..    .....              ......++|+|+|+.|+.++ . +.|.+||+. ..+ ...  ..+.
T Consensus       164 ~~~~--~g~~~----~~~~~--------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~  223 (326)
T 2ghs_A          164 YHVA--KGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI  223 (326)
T ss_dssp             EEEE--TTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred             EEEe--CCcEE----EeeCC--------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE
Confidence            5555  33321    11111              23467899999998776554 3 899999985 113 211  1121


Q ss_pred             e---ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec-cCCcce
Q 012721          367 I---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ-AAPRAR  442 (457)
Q Consensus       367 ~---~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~  442 (457)
                      .   ....               ...+++.++|.+.++...++.|.+|+. ++ +....+..+...+.+++|. |++...
T Consensus       224 ~~~~~~~~---------------p~gi~~d~~G~lwva~~~~~~v~~~d~-~g-~~~~~i~~~~~~~~~~af~g~d~~~L  286 (326)
T 2ghs_A          224 DSTGIKGG---------------MDGSVCDAEGHIWNARWGEGAVDRYDT-DG-NHIARYEVPGKQTTCPAFIGPDASRL  286 (326)
T ss_dssp             ECTTSSSE---------------EEEEEECTTSCEEEEEETTTEEEEECT-TC-CEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred             ECCCCCCC---------------CCeeEECCCCCEEEEEeCCCEEEEECC-CC-CEEEEEECCCCCcEEEEEecCCCCEE
Confidence            1   1111               147899999998877777789999998 45 4556666666778999998 776543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.13  E-value=8.5e-08  Score=87.87  Aligned_cols=171  Identities=12%  Similarity=0.088  Sum_probs=95.9

Q ss_pred             eEEEeCCCCCEEEEeC--------------------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE--ecCC
Q 012721          222 NSISNNSDCETFVSAD--------------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIY  279 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~  279 (457)
                      +.+-|+|+++.++++.                    +..|.+||+. .++..+.+++.     ........+.|  +|++
T Consensus       191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~~~tI~vg-----~~g~~P~~i~f~~~Pdg  264 (462)
T 2ece_A          191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKRIHSLTLG-----EENRMALELRPLHDPTK  264 (462)
T ss_dssp             CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEEEEEEESC-----TTEEEEEEEEECSSTTC
T ss_pred             ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcEeeEEecC-----CCCCccceeEeeECCCC
Confidence            4577899999888873                    7999999998 45666655432     11223455656  9999


Q ss_pred             ccEEEEEc------cCCeEEEEEccCCeeeccccccccccccccCcc------cceeccccceEEEEEccCCCeEEEEec
Q 012721          280 CNLLAYSS------SRGFVRLVDMRQSALCDHSARILRDAAESHGSK------SFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       280 ~~~l~~~~------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                       +++.+++      .+++|.+|....++...  .+++.. ...+...      ..+.+-......+.+||||++|.++..
T Consensus       265 -~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~--~~vIdi-~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr  340 (462)
T 2ece_A          265 -LMGFINMVVSLKDLSSSIWLWFYEDGKWNA--EKVIEI-PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW  340 (462)
T ss_dssp             -CEEEEEEEEETTTCCEEEEEEEEETTEEEE--EEEEEE-CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred             -CEEEEEEeeeccCCCceEEEEEecCCceeE--EEEEeC-CCccccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence             6555554      67788887766543211  111111 0000000      000111235788999999999998763


Q ss_pred             --CcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721          348 --MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       348 --~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                        +.|.+||+....  +.+..+..... +..............-..+.++|||++|+++.
T Consensus       341 g~d~VavfdV~d~~~~~lv~~I~tGG~-~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          341 GIGEVRQYDISNPFKPVLTGKVKLGGI-FHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTTEEEEEECSSTTSCEEEEEEECBTT-TTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEEecCCCCcEEEEEEEeCCe-eccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence              999999985322  33333332210 00000000000000004799999999999888

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.13  E-value=3.7e-09  Score=105.94  Aligned_cols=228  Identities=12%  Similarity=0.052  Sum_probs=138.0

Q ss_pred             CcEEEEEEEecCCCCEEEEe-----eCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          114 EKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~-----s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                      ..+..++|  ||||++|+.+     +.+..|++||+.+++......                                  
T Consensus       129 ~~l~~~~~--SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~----------------------------------  172 (693)
T 3iuj_A          129 TALDQLSF--SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL----------------------------------  172 (693)
T ss_dssp             CEEEEEEE--CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE----------------------------------
T ss_pred             EEEEEEEE--CCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc----------------------------------
Confidence            56888888  8999988853     334679999999987543210                                  


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCC-------------eEEEEEcCCCcce-e
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-------------RINLWNLEISDQC-F  253 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~-------------~i~iwd~~~~~~~-~  253 (457)
                                                .+  .....++|+ |++.|+.+ .+.             .|++|++.+.... .
T Consensus       173 --------------------------~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~  223 (693)
T 3iuj_A          173 --------------------------KD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR  223 (693)
T ss_dssp             --------------------------EE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE
T ss_pred             --------------------------CC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccce
Confidence                                      00  012456799 99888877 553             4999998743321 2


Q ss_pred             eeeecCCCcccC-CCCceEEEEEecCCccEEEEEc----cCCeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721          254 NIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (457)
Q Consensus       254 ~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~----~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  328 (457)
                      .++.     ... |......+.|+|+| ++|+...    .+..|.++|+.++...   ...+.             .+..
T Consensus       224 ~v~~-----~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~~~~~---~~~l~-------------~~~~  281 (693)
T 3iuj_A          224 LVFG-----AIPAQHHRYVGATVTEDD-RFLLISAANSTSGNRLYVKDLSQENAP---LLTVQ-------------GDLD  281 (693)
T ss_dssp             EEES-----CSGGGCCSEEEEEECTTS-CEEEEEEESSSSCCEEEEEETTSTTCC---CEEEE-------------CSSS
T ss_pred             EEEe-----cCCCCCeEEEEEEEcCCC-CEEEEEEccCCCCcEEEEEECCCCCCc---eEEEe-------------CCCC
Confidence            2211     222 44557889999999 7665443    2358999998765311   01111             1223


Q ss_pred             ceEEEEEccCCCeEE-EEe-c---CcEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721          329 SISDIKFANDGQHLL-SRD-Y---MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  401 (457)
Q Consensus       329 ~v~~~~~s~~g~~l~-s~~-~---~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  401 (457)
                      ..... ++++|..|+ ... +   +.|..+|+.. +..  ...+..+...+               .  .|++++++|+.
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~---------------~--~~s~~g~~lv~  342 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN-PGPAHWRDLIPERQQV---------------L--TVHSGSGYLFA  342 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS-CCGGGCEEEECCCSSC---------------E--EEEEETTEEEE
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC-CCccccEEEecCCCCE---------------E--EEEEECCEEEE
Confidence            33343 666666555 332 2   6788888875 332  34455554432               2  89999988876


Q ss_pred             EeC-CC--cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccc
Q 012721          402 GSY-SN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       402 ~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~  448 (457)
                      ... ++  .|++|++..+ ..........+.+..+.++|++...+...++
T Consensus       343 ~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss  391 (693)
T 3iuj_A          343 EYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFEN  391 (693)
T ss_dssp             EEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred             EEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecC
Confidence            655 43  6899998855 3222222344556777778888777665443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.09  E-value=2.1e-08  Score=91.33  Aligned_cols=86  Identities=12%  Similarity=0.041  Sum_probs=61.1

Q ss_pred             EEEccCCCeEEEE-e---------cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEE
Q 012721          333 IKFANDGQHLLSR-D---------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFAT  401 (457)
Q Consensus       333 ~~~s~~g~~l~s~-~---------~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s  401 (457)
                      ++++|+++.++.+ .         .+.+.++|+.+ .+.+..+......                ..++|+|||+ .+++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~s~Dg~~l~va  331 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASDNYA  331 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCEEEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCEEEEE
Confidence            6899999887754 2         22566999986 7777777655543                5899999998 4555


Q ss_pred             Ee-CCCcEEEEecCCCCceeeEEecCCCcceeeeecc
Q 012721          402 GS-YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  437 (457)
Q Consensus       402 ~~-~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p  437 (457)
                      .. .++.|.++|+.++ +....+.....| ..+++++
T Consensus       332 ~~~~~~~VsVID~~t~-kvv~~I~vg~~P-~~i~~~~  366 (368)
T 1mda_H          332 NSAGTEVLDIYDAASD-QDQSSVELDKGP-ESLSVQN  366 (368)
T ss_dssp             EETTTTEEEEEESSSC-EEEEECCCCSCC-CEEECCC
T ss_pred             ccCCCCeEEEEECCCC-cEEEEEECCCCC-CEEEeec
Confidence            55 5899999999999 666666654443 3444443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.09  E-value=1.2e-07  Score=87.09  Aligned_cols=252  Identities=10%  Similarity=0.004  Sum_probs=138.0

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccC-Ccccc
Q 012721           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD  105 (457)
Q Consensus        37 ~~~~s~~~~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~  105 (457)
                      .++|+|||++|+++.          .++.|.+||..+.+..                           .++.-. ...+ 
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~---------------------------~~i~~~~~~~~-  121 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRF-  121 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE---------------------------EEEECCCcccc-
Confidence            899999999998885          3678999999876532                           111100 0000 


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEE-EeecCCCceeeeeeccccccccccCCCCCc
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                           ........+.|  +|+|++|+++..  ++.|.++| .+++.... +....     ++.+.+.....+.       
T Consensus       122 -----~~g~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-----~~~~~~~~~~~~~-------  181 (373)
T 2mad_H          122 -----DVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-----CYHIHPGAPSTFY-------  181 (373)
T ss_pred             -----ccCCCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-----eEEEEeCCCceEE-------
Confidence                 00012346788  799999998874  57899999 88877654 33211     0111111111000       


Q ss_pred             eeccCCccccccceEEEeccCccccccce--eeccCCCCCe-eEEEeCCCCCEEEE-eCCCeEEEEEcCCCc-ceeeeee
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQK--VYPHAHDFNI-NSISNNSDCETFVS-ADDLRINLWNLEISD-QCFNIVD  257 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~h~~~v-~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~-~~~~~~~  257 (457)
                            ....++.+.+++. .........  .. .....++ ....+.+++..++. ...+.+.+.|+.... .....+.
T Consensus       182 ------~~~~dg~~~~vd~-~g~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~  253 (373)
T 2mad_H          182 ------LLCAQGGLAKTDH-AGGAAGAGLVGAM-LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID  253 (373)
T ss_pred             ------EEcCCCCEEEEEC-CCcEEEEEecccc-ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence                  0112334555555 211110000  00 0111121 23445555554444 477899999986322 1122221


Q ss_pred             cCCCc---ccCCCCceEEEEEecCCccEEEEEcc----------CCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721          258 MKPSN---MDDLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (457)
Q Consensus       258 ~~~~~---~~~~~~~i~~v~~~p~~~~~l~~~~~----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (457)
                      .....   ..-.......+.++|++ ..+.++..          ++.|.++|+.+.+..    ..+..            
T Consensus       254 ~~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv----~~i~~------------  316 (373)
T 2mad_H          254 ALSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS----SQISL------------  316 (373)
T ss_pred             ecCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCCCEEE----EEEEC------------
Confidence            11000   00012234457889998 55555432          468999999987654    22222            


Q ss_pred             ccccceEEEEEccCCC-eEEEEe--cCcEEEEeccCCCCceeE
Q 012721          325 EIIASISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVAT  364 (457)
Q Consensus       325 ~h~~~v~~~~~s~~g~-~l~s~~--~~~i~~wd~~~~~~~~~~  364 (457)
                        ......++|+|||+ +++++.  ++.|.++|+.+ .+.+..
T Consensus       317 --g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t-~~vv~~  356 (373)
T 2mad_H          317 --GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA-GDQDQS  356 (373)
T ss_pred             --CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC-CCEEee
Confidence              23578999999999 677665  49999999986 677766

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.09  E-value=6.9e-08  Score=86.41  Aligned_cols=183  Identities=11%  Similarity=0.017  Sum_probs=111.9

Q ss_pred             CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC-CCCceEEEEEecCCccEEEE----Ecc---
Q 012721          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAY----SSS---  288 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~----~~~---  288 (457)
                      ...+..++++++|+++++. .++.|.+|+.+  +........    ..+ ....+..++++|+| .++++    |..   
T Consensus        85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~~~~~~~----~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~  157 (305)
T 3dr2_A           85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQAHLLVGR----YAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPS  157 (305)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEECE----ETTEECSCCCCEEECTTS-CEEEECCSGGGSCGG
T ss_pred             CCccceeeECCCCCEEEEECCCCEEEEECCC--CCEEEEEec----cCCCccCCCCCEEECCCC-CEEEeCcCCCccccc
Confidence            3457889999999977777 67899999976  332222110    111 12346789999999 87776    332   


Q ss_pred             ----------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c------CcEE
Q 012721          289 ----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y------MNLK  351 (457)
Q Consensus       289 ----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~------~~i~  351 (457)
                                .+.|..||..+++..    ... .              ......++|+|+++.|+.++ .      +.|.
T Consensus       158 ~~~~~~~~~~~~~v~~~d~~~g~~~----~~~-~--------------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~  218 (305)
T 3dr2_A          158 QGCPADPELAHHSVYRLPPDGSPLQ----RMA-D--------------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEIT  218 (305)
T ss_dssp             GSCCCCCSSSCEEEEEECSSSCCCE----EEE-E--------------ESSEEEEEECTTSSEEEEEECCC---CCCEEE
T ss_pred             cccccccccCCCeEEEEcCCCCcEE----EEe-c--------------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEE
Confidence                      256777777655432    111 1              13467899999999777653 2      5799


Q ss_pred             EEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcce
Q 012721          352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  431 (457)
Q Consensus       352 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~  431 (457)
                      +|++.. .. +...........         .  ....+++.++|++.++ +.+| |.+|+.. + +....+.... .+.
T Consensus       219 ~~~~~~-~~-l~~~~~~~~~~~---------~--~pdgi~~d~~G~lwv~-~~~g-v~~~~~~-g-~~~~~~~~~~-~~~  280 (305)
T 3dr2_A          219 AFAWRD-GA-LHDRRHFASVPD---------G--LPDGFCVDRGGWLWSS-SGTG-VCVFDSD-G-QLLGHIPTPG-TAS  280 (305)
T ss_dssp             EEEEET-TE-EEEEEEEECCSS---------S--CCCSEEECTTSCEEEC-CSSE-EEEECTT-S-CEEEEEECSS-CCC
T ss_pred             EEEecC-CC-ccCCeEEEECCC---------C--CCCeEEECCCCCEEEe-cCCc-EEEECCC-C-CEEEEEECCC-cee
Confidence            999864 22 221111100000         0  0036899999995544 4444 9999984 4 4555555544 588


Q ss_pred             eeeeccCCcceec
Q 012721          432 KPILQAAPRARRS  444 (457)
Q Consensus       432 ~~~~~p~~~~~~~  444 (457)
                      .++|.|++.....
T Consensus       281 ~~~f~~d~~~L~i  293 (305)
T 3dr2_A          281 NCTFDQAQQRLFI  293 (305)
T ss_dssp             EEEECTTSCEEEE
T ss_pred             EEEEeCCCCEEEE
Confidence            8999988764443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.05  E-value=9.5e-07  Score=77.23  Aligned_cols=176  Identities=12%  Similarity=0.005  Sum_probs=105.4

Q ss_pred             CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc--CCeEEEE
Q 012721          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLV  295 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~--dg~i~lw  295 (457)
                      ....+++++++..|+.+  ..+.|.+++++ ......+.       .........++++|++..++++...  .+.|..+
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVLF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEEEEE-------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence            56789999876555554  78899999987 32222221       1112456899999965244444433  4688888


Q ss_pred             EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeEeeecccccc
Q 012721          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP  373 (457)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~  373 (457)
                      ++.....     ..+..            ........++++|++..|..++ . +.|.++|... ......+.....+  
T Consensus       152 ~~dg~~~-----~~~~~------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~P--  211 (267)
T 1npe_A          152 HMDGTNR-----RILAQ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQYP--  211 (267)
T ss_dssp             ETTSCCC-----EEEEC------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCSE--
T ss_pred             ecCCCCc-----EEEEE------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCCc--
Confidence            8764321     11110            0013467899999887777654 3 8999999863 2222222211111  


Q ss_pred             ccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCCCceeeEEecCC-CcceeeeeccCCc
Q 012721          374 KLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPR  440 (457)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~  440 (457)
                                    ..++..  +..|+.+. ..+.|.++|..++ +....+.... .....+++.|++-
T Consensus       212 --------------~gi~~d--~~~lyva~~~~~~v~~~d~~~g-~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          212 --------------FAVTSY--GKNLYYTDWKTNSVIAMDLAIS-KEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             --------------EEEEEE--TTEEEEEETTTTEEEEEETTTT-EEEEEECCSSCCCCCCEEEECSCC
T ss_pred             --------------eEEEEe--CCEEEEEECCCCeEEEEeCCCC-CceEEEccccccccceeeecCccC
Confidence                          355553  44555444 5689999999988 5555554333 3477888888864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.00  E-value=1.4e-07  Score=93.92  Aligned_cols=202  Identities=10%  Similarity=0.048  Sum_probs=116.2

Q ss_pred             eEEEeCCCCCEEEEe-CCC-------------------eEEEEEcCCCcceeeeeecCCCccc--CCCCceEEEEEecCC
Q 012721          222 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPIY  279 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~p~~  279 (457)
                      ..++++|++..++.+ .++                   .|..+|.+ .++..-.+...+...-  ........+....+|
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~-TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD-TGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT-TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC-CCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            467788888888877 553                   59999998 4444433322211000  001222333444455


Q ss_pred             c--cEEEEEccCCeEEEEEccCCeeecccccc---cccccc---ccC--------cc--cce---eccccceEEEEEccC
Q 012721          280 C--NLLAYSSSRGFVRLVDMRQSALCDHSARI---LRDAAE---SHG--------SK--SFF---TEIIASISDIKFAND  338 (457)
Q Consensus       280 ~--~~l~~~~~dg~i~lwd~~~~~~~~~~~~~---~~~~~~---~~~--------~~--~~~---~~h~~~v~~~~~s~~  338 (457)
                      .  ..++.++.+|.|+++|.++++..-.....   +...-+   .+.        ..  ..+   .+.. .-..++++|+
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~-~w~~~a~dp~  403 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH-NWHPMSFNPQ  403 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS-CSSCCEEETT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc-CCCCceEcCC
Confidence            2  47888999999999999999764211000   000000   000        00  000   0000 0125788898


Q ss_pred             CCeEEEEe--------------------------------------------cCcEEEEeccCCCCceeEeeeccccccc
Q 012721          339 GQHLLSRD--------------------------------------------YMNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       339 g~~l~s~~--------------------------------------------~~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      +.++++..                                            .+.|..||+.+ ++.+-.+......   
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~~---  479 (677)
T 1kb0_A          404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVSPW---  479 (677)
T ss_dssp             TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESSSC---
T ss_pred             CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCCCC---
Confidence            87776532                                            16788999986 6766665533221   


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe-cCCCcceeeeeccCCccee
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNENRKPILQAAPRARR  443 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~  443 (457)
                                   ....+..++..++.++.||.+++||..++ +.+..+. ++......+.+.+++....
T Consensus       480 -------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          480 -------------NGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             -------------CCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             -------------cCcceEeCCCEEEEECCCCcEEEEECCCC-ceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence                         24556677888899999999999999999 5555554 4434445566667775444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.00  E-value=4.3e-10  Score=103.61  Aligned_cols=203  Identities=8%  Similarity=0.012  Sum_probs=105.1

Q ss_pred             CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCcc
Q 012721          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  205 (457)
Q Consensus       126 ~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  205 (457)
                      ++..+++++.|+.|..||..+|+.......                                                  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--------------------------------------------------   37 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--------------------------------------------------   37 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence            567899999999999999999976544321                                                  


Q ss_pred             ccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721          206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (457)
Q Consensus       206 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~  284 (457)
                                   ..+.+..+..++..++++ .|+.|+.||.+ .++....+........ ...+    .+. .+ ..++
T Consensus        38 -------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~-tG~~~w~~~~~~~~~~-~~sp----~~~-~~-~~v~   96 (369)
T 2hz6_A           38 -------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK-NNEGLTKLPFTIPELV-QASP----CRS-SD-GILY   96 (369)
T ss_dssp             -------------CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHH-TTCS----CC-------CC
T ss_pred             -------------CCceecceEcCCCEEEEeCCCCEEEEEECC-CCceeeeeeccCcccc-ccCc----eEe-cC-CEEE
Confidence                         122223334567778877 99999999997 3443322211000000 0111    111 23 5677


Q ss_pred             EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCcee
Q 012721          285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  363 (457)
Q Consensus       285 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~  363 (457)
                      +++.|+.|..||.++++..    ..+..             + .   ...++|++..+++++ ++.|+.||.++ ++.+.
T Consensus        97 ~g~~dg~v~a~D~~tG~~~----w~~~~-------------~-~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W  154 (369)
T 2hz6_A           97 MGKKQDIWYVIDLLTGEKQ----QTLSS-------------A-F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRW  154 (369)
T ss_dssp             CCEEEEEEEEECCC-------------------------------------------EEEEEEEEEEECCCSSS-SSCCC
T ss_pred             EEeCCCEEEEEECCCCcEE----EEecC-------------C-C---cccccccCCEEEEEecCCEEEEEECCC-CCEEE
Confidence            8888999999999998643    11111             0 0   134456777787765 49999999986 66655


Q ss_pred             EeeeccccccccccccCCCCccccceEEEcCCC---cEEEEEeCCCcEEEEecCCCCceeeEEecCCCcce-eeeeccCC
Q 012721          364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR-KPILQAAP  439 (457)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~-~~~~~p~~  439 (457)
                      .+..+...                 ...+.++.   ..+++++.||.|+.||..+| +..-... ..+++. ...+++++
T Consensus       155 ~~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~-~~~pv~~~~~~~~dg  215 (369)
T 2hz6_A          155 NATYFDYA-----------------ASLPEDDVDYKMSHFVSNGDGLVVTVDSESG-DVLWIQN-YASPVVAFYVWQREG  215 (369)
T ss_dssp             EEEEEEEC-----------------CBCCCCCTTCCCCEEEEETSCEEEEECTTTC-CEEEEEE-CSSCEEEEEECTTSS
T ss_pred             eEeccccc-----------------CccccCCccccceEEEECCCCEEEEEECCCC-cEEEEec-CCCceEEEEEecCCc
Confidence            55432211                 23333332   45777889999999999999 4444444 334443 33445555


Q ss_pred             c
Q 012721          440 R  440 (457)
Q Consensus       440 ~  440 (457)
                      .
T Consensus       216 ~  216 (369)
T 2hz6_A          216 L  216 (369)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.98  E-value=9.1e-08  Score=88.61  Aligned_cols=255  Identities=10%  Similarity=0.115  Sum_probs=140.8

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccC-Ccccc
Q 012721           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD  105 (457)
Q Consensus        37 ~~~~s~~~~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~  105 (457)
                      .++++|||++|+++.          .++.|.++|..+.+..                           ..+.-- ...| 
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv---------------------------~~I~v~g~~r~-  173 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRF-  173 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTCCCC-
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE---------------------------EEEECCCcccc-
Confidence            899999999888875          3678999999887642                           221100 0000 


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (457)
                           ........+.|  +++|++++++..  ++.|.+.|+.+++....+.....     ....+.....+       ..
T Consensus       174 -----~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~~~p~g~~~~-------v~  234 (426)
T 3c75_H          174 -----LVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YHIFPASPTVF-------YM  234 (426)
T ss_dssp             -----CBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEE-------EE
T ss_pred             -----ccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----eeeccCCCcEE-------EE
Confidence                 00011234677  799999998874  58899999999988766554211     00000000000       00


Q ss_pred             eccCCccccccceEEEeccCccccccc-eeeccCCCCCe-eEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce-eeeeecC
Q 012721          184 HGYHLEWTENMATKIANVGNSVHARCQ-KVYPHAHDFNI-NSISNNSDCETFVSA-DDLRINLWNLEISDQC-FNIVDMK  259 (457)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~h~~~v-~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~~  259 (457)
                      +      ..++.+.+.+.......... ..+ .....++ ..+.+.+++..++.. ..+.|.+.|+...... ...+.+.
T Consensus       235 ~------~~dG~~~~V~~~~~~v~~~~~~~~-~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~  307 (426)
T 3c75_H          235 N------CRDGSLARVDFADGETKVTNTEVF-HTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL  307 (426)
T ss_dssp             E------ETTSSEEEEECCTTCCEEEECCCC-SCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred             E------cCCCCEEEEECCCCcEEEEeeeee-ccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence            1      11222222222110000000 011 1111121 235678888877766 7889999998632211 1111110


Q ss_pred             C-Cccc--CCCCceEEEEEecCCccEEEEEcc----------CCeEEEEEccCCeeeccccccccccccccCcccceecc
Q 012721          260 P-SNMD--DLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (457)
Q Consensus       260 ~-~~~~--~~~~~i~~v~~~p~~~~~l~~~~~----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  326 (457)
                      . ....  ........++++|++ ..+++...          ++.|.++|+.+.+..    ..+..              
T Consensus       308 ~~~~i~~g~~p~g~~~va~s~dg-~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv----~~I~v--------------  368 (426)
T 3c75_H          308 TEAERADDWRPGGWQQTAYHRQS-DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI----NKIEL--------------  368 (426)
T ss_dssp             CTTTGGGTEEECSSSCEEEEGGG-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----EEEEE--------------
T ss_pred             cccccccccccCCceeeEEcCCC-CEEEEEecccccccccCCCCEEEEEECCCCeEE----EEEEC--------------
Confidence            0 0000  001112236899998 55444431          357999999998655    33332              


Q ss_pred             ccceEEEEEccCCC-eEEEEe--cCcEEEEeccCCCCceeEe
Q 012721          327 IASISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF  365 (457)
Q Consensus       327 ~~~v~~~~~s~~g~-~l~s~~--~~~i~~wd~~~~~~~~~~~  365 (457)
                      ......+.|+|||+ ++++..  ++.|.++|+.+ .+.+.++
T Consensus       369 g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t-~kvv~tI  409 (426)
T 3c75_H          369 GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT-GEELRSV  409 (426)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCEEEEE
T ss_pred             CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC-CCEEEEe
Confidence            13478999999999 788775  49999999986 7888776

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.95  E-value=3.7e-07  Score=90.98  Aligned_cols=202  Identities=12%  Similarity=0.062  Sum_probs=117.0

Q ss_pred             eEEEeCCCCCEEEEe-CCC-------------------eEEEEEcCCCcceeeeeecCCCcccC--CCCceEEEEEecCC
Q 012721          222 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIY  279 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~~p~~  279 (457)
                      ..++++|+..+++.+ .++                   .|..+|.++ ++..-.+...+.....  ............+|
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT-GEYVWHYQTTPGDAWDYTATQHMILAELPIDG  316 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC-CceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence            367888888888888 665                   499999994 4444333221110000  11222222333355


Q ss_pred             cc---EEEEEccCCeEEEEEccCCeeeccccc---ccccccc----c-----------cCccc--ceeccc--cceEEEE
Q 012721          280 CN---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE----S-----------HGSKS--FFTEII--ASISDIK  334 (457)
Q Consensus       280 ~~---~l~~~~~dg~i~lwd~~~~~~~~~~~~---~~~~~~~----~-----------~~~~~--~~~~h~--~~v~~~~  334 (457)
                       .   .++.++.+|.++++|.++++.......   .+..+.+    .           +....  .+.+..  ..-..++
T Consensus       317 -~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a  395 (689)
T 1yiq_A          317 -KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMS  395 (689)
T ss_dssp             -EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCE
T ss_pred             -cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcce
Confidence             4   788999999999999999976521000   0000000    0           00000  000000  0122378


Q ss_pred             EccCCCeEEEEe----------------------------------------------cCcEEEEeccCCCCceeEeeec
Q 012721          335 FANDGQHLLSRD----------------------------------------------YMNLKLWDIRMDSTPVATFKIH  368 (457)
Q Consensus       335 ~s~~g~~l~s~~----------------------------------------------~~~i~~wd~~~~~~~~~~~~~~  368 (457)
                      |+|+..++++..                                              +|.|+.||+.+ ++.+-.+..+
T Consensus       396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~  474 (689)
T 1yiq_A          396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYV  474 (689)
T ss_dssp             EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEES
T ss_pred             ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCC
Confidence            888877776531                                              26688899986 7776666554


Q ss_pred             cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC-CCcceeeeeccCCccee
Q 012721          369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQAAPRARR  443 (457)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~  443 (457)
                      ...                ..-.+...+.+++.|+.||.|+.||.++| +.+..++.. ......+.+..+|....
T Consensus       475 ~~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          475 TIF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTG-EKLWEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             SSC----------------CCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCc----------------cCccceECCCEEEEECCCCcEEEEECCCC-ccceeeeCCCCcccCceEEEECCEEEE
Confidence            432                23456667889999999999999999999 555555533 33345677777776553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.83  E-value=2.3e-07  Score=84.45  Aligned_cols=241  Identities=9%  Similarity=-0.035  Sum_probs=134.3

Q ss_pred             ccCCceEEEEECCCCCEEEEEeC-----CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  104 (457)
                      .|...+..++++++|+++++-..     ++.|.+||+.+++..                           ..+.....  
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~---------------------------~~~~~~~~--  114 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLS---------------------------RVIYLPPP--  114 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEE---------------------------EEEECCTT--
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEE---------------------------EEEECChh--
Confidence            35678999999999987776543     578999998877631                           12211110  


Q ss_pred             cccccccccCcEEEEEEEecCC-CCEEEEee---CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCC
Q 012721          105 DYLKSLEIEEKINRVRWCAAPN-GSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (457)
Q Consensus       105 ~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (457)
                          .......+..+++  +++ +..+++-.   .++.|.+||..+++......                          
T Consensus       115 ----~~~~~~~~~~v~v--d~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~--------------------------  162 (343)
T 2qe8_A          115 ----ITLSNSFVNDLAV--DLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ--------------------------  162 (343)
T ss_dssp             ----TSCTTCCCCEEEE--ETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT--------------------------
T ss_pred             ----hcccccccceEEE--ecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec--------------------------
Confidence                0000134688898  454 44445544   67899999998876544321                          


Q ss_pred             CceeccCCccccccceEEEeccCccccccceeeccCCCCCee-EEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeec
Q 012721          181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN-SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM  258 (457)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~  258 (457)
                                                         +|..... ...+.+++..+.+. .++.++.|.             
T Consensus       163 -----------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------  194 (343)
T 2qe8_A          163 -----------------------------------GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------------  194 (343)
T ss_dssp             -----------------------------------TCTTTSCCSCCCEETTEECBEECTTSCEECCC-------------
T ss_pred             -----------------------------------CCCcccccccceeECCEEEEeccCCCceecee-------------
Confidence                                               1100000 02233356555555 566554432             


Q ss_pred             CCCcccCCCCceEEEEEecCCccEEEEEccCC-eEEEEEccCCeee-ccccccccccccccCcccceeccccceEEEEEc
Q 012721          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (457)
Q Consensus       259 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  336 (457)
                               ..+..|+|+|++ +.|+++..++ .+..++....... ......+..        ....++......++++
T Consensus       195 ---------~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~g~pdgia~d  256 (343)
T 2qe8_A          195 ---------LGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK--------IERYSEKPICDGISID  256 (343)
T ss_dssp             ---------CCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT--------CEEEEECCSCSCEEEC
T ss_pred             ---------cccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc--------eEecccCCCCceEEEC
Confidence                     125679999999 8777776655 4444443210000 000000000        0011223456679999


Q ss_pred             cCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          337 NDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       337 ~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      ++|.++++... +.|.+||... ++.. .+.......             ...+++|.+++.++++.+..+.+.+|.
T Consensus       257 ~~G~l~va~~~~~~V~~~d~~~-G~~~-~~~~~~~~~-------------~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          257 KDHNIYVGDLAHSAIGVITSAD-RAYK-LLVTDEKLS-------------WTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             TTCCEEEEEGGGTEEEEEETTT-TEEE-EEEECGGGS-------------CEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             CCCCEEEEccCCCeEEEEECCC-CCEE-EEEECCcee-------------cCCeeEECCCCcEEEEeCccccccccc
Confidence            99988887765 9999999832 4432 222211110             015899999998888877655554443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.75  E-value=5.9e-09  Score=95.96  Aligned_cols=188  Identities=10%  Similarity=-0.001  Sum_probs=94.4

Q ss_pred             CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEE
Q 012721           43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  122 (457)
Q Consensus        43 ~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~  122 (457)
                      ++..|++++.||.|+.||..+++..                           ..+.. .             .+.+..+ 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~---------------------------W~~~~-~-------------~~~s~p~-   45 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIK---------------------------WTLKE-D-------------PVLQVPT-   45 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEE---------------------------EEEEC-C-------------CSCCCC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEecC-C-------------Cceecce-
Confidence            5788999999999999999988752                           22222 1             1222223 


Q ss_pred             ecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEecc
Q 012721          123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG  202 (457)
Q Consensus       123 ~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  202 (457)
                       ..++..+++++.|+.|+.||..+|+...........                                           
T Consensus        46 -~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~-------------------------------------------   81 (369)
T 2hz6_A           46 -HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE-------------------------------------------   81 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-----CCSEECSCCHHH-------------------------------------------
T ss_pred             -EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-------------------------------------------
Confidence             245667888889999999999888654332110000                                           


Q ss_pred             CccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCcc
Q 012721          203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  281 (457)
Q Consensus       203 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~  281 (457)
                                  .....++    +. ++..++++ .|+.|+.||.+ .++....+       ..+.    ...++|++ .
T Consensus        82 ------------~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~-tG~~~w~~-------~~~~----~~~~~p~~-~  131 (369)
T 2hz6_A           82 ------------LVQASPC----RS-SDGILYMGKKQDIWYVIDLL-TGEKQQTL-------SSAF----ADSLSPST-S  131 (369)
T ss_dssp             ------------HHTTCSC----C------CCCCEEEEEEEEECCC----------------------------------
T ss_pred             ------------ccccCce----Ee-cCCEEEEEeCCCEEEEEECC-CCcEEEEe-------cCCC----cccccccC-C
Confidence                        0000111    11 23456666 89999999998 44443221       2121    23455676 7


Q ss_pred             EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC----CCeEEEEecCcEEEEeccC
Q 012721          282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----GQHLLSRDYMNLKLWDIRM  357 (457)
Q Consensus       282 ~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----g~~l~s~~~~~i~~wd~~~  357 (457)
                      .+++++.|+.|+.||.++++..-    .+..               .......++++    +.+++...+|.|+.||.++
T Consensus       132 ~v~~~~~dg~v~a~d~~tG~~~W----~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          132 LLYLGRTEYTITMYDTKTRELRW----NATY---------------FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             -EEEEEEEEEEECCCSSSSSCCC----EEEE---------------EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             EEEEEecCCEEEEEECCCCCEEE----eEec---------------ccccCccccCCccccceEEEECCCCEEEEEECCC
Confidence            88899999999999999886331    1111               01112223332    4444444459999999986


Q ss_pred             CCCceeEee
Q 012721          358 DSTPVATFK  366 (457)
Q Consensus       358 ~~~~~~~~~  366 (457)
                       ++.+-.+.
T Consensus       193 -G~~~W~~~  200 (369)
T 2hz6_A          193 -GDVLWIQN  200 (369)
T ss_dssp             -CCEEEEEE
T ss_pred             -CcEEEEec
Confidence             67666555

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.74  E-value=3.4e-06  Score=80.22  Aligned_cols=148  Identities=7%  Similarity=0.040  Sum_probs=86.2

Q ss_pred             CeEEEEEcCCC-cce-eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeec-c----cccccc
Q 012721          239 LRINLWNLEIS-DQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-H----SARILR  311 (457)
Q Consensus       239 ~~i~iwd~~~~-~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~-~----~~~~~~  311 (457)
                      +.|.+.|..+. +.. ...+..        .....++.++|||...++++..+.+|.++|+.+.+... .    ...+..
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipv--------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~  325 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPI--------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA  325 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEE--------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred             CcEEEEeCcccCCceeEEEEec--------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence            45888888841 222 333221        13456889999993345555588999999999653100 0    000000


Q ss_pred             ccccccCcccceeccccceEEEEEccCCCeEEEEe--cCcEEEEeccCC---------CCceeEeeeccccccccccccC
Q 012721          312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD---------STPVATFKIHEHLRPKLCDLYN  380 (457)
Q Consensus       312 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~  380 (457)
                      .           ..-...-..++|+|+| ++.+..  ++.|.+||+...         .+.+..+..|-....       
T Consensus       326 ~-----------v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh-------  386 (595)
T 1fwx_A          326 E-----------PELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH-------  386 (595)
T ss_dssp             C-----------CBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE-------
T ss_pred             E-----------cCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccc-------
Confidence            0           0112457889999999 666654  499999999641         344555555432100       


Q ss_pred             CCCccccceEEEcCCCcEEEEEeC---CCc----------EEEEecCCC
Q 012721          381 NDSIFDKFECSVSGDGLHFATGSY---SNL----------LRIFSHGVG  416 (457)
Q Consensus       381 ~~~~~~v~~~~~s~d~~~l~s~~~---dg~----------i~iw~~~~~  416 (457)
                         ...-....++|||++|++...   |+.          -.++|+..+
T Consensus       387 ---~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          387 ---LKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             ---EEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred             ---ceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence               000023466899999998764   432          188999655

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.72  E-value=3.2e-06  Score=77.55  Aligned_cols=199  Identities=10%  Similarity=-0.002  Sum_probs=115.9

Q ss_pred             eeEEEeCCCCCEEEEe-CC------CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc------
Q 012721          221 INSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS------  287 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~------  287 (457)
                      -..+...|+| +++++ .+      +.|.++|.+ ..+.+..+...    .+.......+-|+|++ +.+++..      
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~-T~~v~~~~~~~----~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~  212 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY-SFEPLGKWEID----RGDQYLAYDFWWNLPN-EVLVSSEWAVPNT  212 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT-TCCEEEECCSB----CTTCCCCCCEEEETTT-TEEEECBCCCHHH
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC-CCeEEEEEccC----CCCccccceEEECCCC-CEEEEccCcCccc
Confidence            3456778999 66665 44      789999998 56666654321    1112234468889999 8887774      


Q ss_pred             -------------cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE--ccCCCeEEEEe------
Q 012721          288 -------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQHLLSRD------  346 (457)
Q Consensus       288 -------------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~~g~~l~s~~------  346 (457)
                                   .+.+|.+||+.+++..    ..+.. .          ........+.|  +|+++++..++      
T Consensus       213 ~~~g~~~~~~~~~~~d~V~v~D~~~~k~~----~tI~v-g----------~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~  277 (462)
T 2ece_A          213 IEDGLKLEHLKDRYGNRIHFWDLRKRKRI----HSLTL-G----------EENRMALELRPLHDPTKLMGFINMVVSLKD  277 (462)
T ss_dssp             HTTCCCTTTHHHHSCCEEEEEETTTTEEE----EEEES-C----------TTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred             cccccchhhhhhccCCEEEEEECCCCcEe----eEEec-C----------CCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence                         4789999999987543    22222 0          00122344545  99999887543      


Q ss_pred             c-CcEEEEeccCCCCce--eEeeeccccc-ccccccc----CCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCC
Q 012721          347 Y-MNLKLWDIRMDSTPV--ATFKIHEHLR-PKLCDLY----NNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGS  417 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~--~~~~~~~~~~-~~~~~~~----~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~  417 (457)
                      . ++|.+|..+. ++..  ..+......+ ..+..+.    ....  ....+.+|+||++|.++.. .+.|.+||+....
T Consensus       278 Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~--~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~  354 (462)
T 2ece_A          278 LSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP--LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF  354 (462)
T ss_dssp             CCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECC--CCCCEEECTTSCEEEEEETTTTEEEEEECSSTT
T ss_pred             CCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCC--ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence            3 7888777653 3211  1111111000 0000000    0000  1158999999999998876 6799999986432


Q ss_pred             ceeeEEecCCC----------------cceeeeeccCCcceec
Q 012721          418 AGGITVEAGKN----------------ENRKPILQAAPRARRS  444 (457)
Q Consensus       418 ~~~~~~~~~~~----------------~v~~~~~~p~~~~~~~  444 (457)
                      ....+-....+                .-..+.++||+.-...
T Consensus       355 ~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyV  397 (462)
T 2ece_A          355 KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYV  397 (462)
T ss_dssp             SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEE
T ss_pred             CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEE
Confidence            22222111111                3588899999987766

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.72  E-value=7e-07  Score=81.26  Aligned_cols=254  Identities=9%  Similarity=0.005  Sum_probs=134.1

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccC-Ccccc
Q 012721           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD  105 (457)
Q Consensus        37 ~~~~s~~~~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~  105 (457)
                      .+.++||+++++++.          .++.|.+||+.+.+..                           .++... ...|-
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv---------------------------~~I~v~~~~~~~  121 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRFS  121 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---------------------------EEEEETTSCSCC
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE---------------------------EEEECCCccccc
Confidence            799999999988886          3678999999988742                           232211 00000


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeC--CCeEEE--EEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKL--WKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (457)
                            .......+.+  +|||++++++..  +..+.+  +|..+   ...+.....     +...+.....+..     
T Consensus       122 ------~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-----~~~~p~g~~~~~~-----  180 (368)
T 1mda_H          122 ------VGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-----FHIHPGAAATHYL-----  180 (368)
T ss_dssp             ------BSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-----CCCEEEETTEEEC-----
T ss_pred             ------cCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-----eEEccCCCeEEEE-----
Confidence                  0011345788  799999998864  467888  88877   222221110     0011110000000     


Q ss_pred             ceeccCCccccccceEEEeccCccc--cccce---eeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc-ceee
Q 012721          182 FAHGYHLEWTENMATKIANVGNSVH--ARCQK---VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFN  254 (457)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~---~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~  254 (457)
                              ...++.+.+.+.+....  .+...   ....-...+.   . .+++..++.. . +.|.+.|+.... ....
T Consensus       181 --------~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~  247 (368)
T 1mda_H          181 --------GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA  247 (368)
T ss_dssp             --------CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC
T ss_pred             --------EcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE
Confidence                    01122333344432000  00000   0001112233   3 4455555554 8 999999986322 1222


Q ss_pred             eeecCCCcccCC---CCceEEEEEecCCccEEEEEcc---------CCeEEEEEccCCeeeccccccccccccccCcccc
Q 012721          255 IVDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (457)
Q Consensus       255 ~~~~~~~~~~~~---~~~i~~v~~~p~~~~~l~~~~~---------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (457)
                      .+.+.......+   ......++++|++ ..++++..         ++.+.++|+.+.+..    ..+..          
T Consensus       248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v----------  312 (368)
T 1mda_H          248 AIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN----------  312 (368)
T ss_dssp             CCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE----------
T ss_pred             EEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC----------
Confidence            211110000000   1111226799998 65554432         235669999998654    33322          


Q ss_pred             eeccccceEEEEEccCCCe-EEEEe--cCcEEEEeccCCCCceeEeeecccc
Q 012721          323 FTEIIASISDIKFANDGQH-LLSRD--YMNLKLWDIRMDSTPVATFKIHEHL  371 (457)
Q Consensus       323 ~~~h~~~v~~~~~s~~g~~-l~s~~--~~~i~~wd~~~~~~~~~~~~~~~~~  371 (457)
                          ......++|+|||++ +++..  ++.|.++|+.+ .+.+..+.....+
T Consensus       313 ----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P  359 (368)
T 1mda_H          313 ----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP  359 (368)
T ss_dssp             ----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred             ----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence                135789999999985 44544  49999999986 8888888766554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.69  E-value=1.4e-05  Score=71.96  Aligned_cols=157  Identities=11%  Similarity=0.030  Sum_probs=91.8

Q ss_pred             CeeEEEeCC-CCCEEEEe-C-----------------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc
Q 012721          220 NINSISNNS-DCETFVSA-D-----------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (457)
Q Consensus       220 ~v~~~~~~~-~~~~l~~~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~  280 (457)
                      ....+++.+ +|.++++. .                 ++.|..||.. .+......        ........++++|++ 
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~--------~~~~~p~gia~~~dg-  196 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-TKETTLLL--------KELHVPGGAEVSADS-  196 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT-TTEEEEEE--------EEESCCCEEEECTTS-
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC-CCEEEEec--------cCCccCcceEECCCC-
Confidence            456788888 88777764 2                 3678888876 33322211        011234678999998 


Q ss_pred             cEEE-EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-----------cC
Q 012721          281 NLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----------YM  348 (457)
Q Consensus       281 ~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----------~~  348 (457)
                      +.|. +-...+.|..|++......  ....+..             ..+ ...++++++|++.++..           .+
T Consensus       197 ~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~-------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~  260 (322)
T 2fp8_A          197 SFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK-------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDP  260 (322)
T ss_dssp             SEEEEEEGGGTEEEEEESSSTTTT--CEEEEEE-------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcCC--ccceEEe-------------CCC-CCCeEECCCCCEEEEecCcccccccCCCcc
Confidence            6554 4466789999998753210  0011110             012 56789999998776643           25


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      .|..+|..  ++.+..+....+..           ...+..+++ .++.+.++...++.|..+++...
T Consensus       261 ~v~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          261 KGIKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEEEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             EEEEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            57777763  67676665443210           000145655 46666666667788999998644

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.69  E-value=7.3e-05  Score=65.08  Aligned_cols=135  Identities=13%  Similarity=0.150  Sum_probs=81.2

Q ss_pred             CeeEEEeCCCCCEEEEe--C--CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721          220 NINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw  295 (457)
                      ....++++|++..|+.+  .  .+.|..++++ .. ....+      ..........++++|++..++++-...+.|.++
T Consensus       123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~-~~~~~------~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GT-NRRIL------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SC-CCEEE------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CC-CcEEE------EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            45789999966555544  3  4789888887 22 22221      111224578999999873555666677899999


Q ss_pred             EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeEeeecccccc
Q 012721          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP  373 (457)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~  373 (457)
                      |+......    .....              ......++..  +..|..++ . +.|..+|..+ ++.+..+.......+
T Consensus       195 ~~~g~~~~----~~~~~--------------~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~-g~~~~~i~~g~~~~p  253 (267)
T 1npe_A          195 NPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI-SKEMDTFHPHKQTRL  253 (267)
T ss_dssp             ETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEEEETTTTEEEEEETTT-TEEEEEECCSSCCCC
T ss_pred             ecCCCceE----EEecC--------------CCCceEEEEe--CCEEEEEECCCCeEEEEeCCC-CCceEEEcccccccc
Confidence            98764321    11111              1123455554  45555443 3 8999999875 677777654321100


Q ss_pred             ccccccCCCCccccceEEEcCCCc
Q 012721          374 KLCDLYNNDSIFDKFECSVSGDGL  397 (457)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~s~d~~  397 (457)
                                    ..+++.|++.
T Consensus       254 --------------~gi~~~~~~~  263 (267)
T 1npe_A          254 --------------YGITIALSQC  263 (267)
T ss_dssp             --------------CCEEEECSCC
T ss_pred             --------------ceeeecCccC
Confidence                          4788888865

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.68  E-value=4e-05  Score=68.29  Aligned_cols=238  Identities=11%  Similarity=0.114  Sum_probs=130.1

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      .....++|+++|+++++-..++.|..|+.++...                            ..+. ..           
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~----------------------------~~~~-~~-----------   71 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ----------------------------IHAT-VE-----------   71 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE----------------------------EEEE-CS-----------
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE----------------------------EEEe-CC-----------
Confidence            5678899999999777776788888888654321                            1111 11           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCC-C-eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTND-K-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d-~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                       .....+++  .++++++++.... + .|..++..+++........                                  
T Consensus        72 -~~p~gia~--~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~----------------------------------  114 (306)
T 2p4o_A           72 -GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP----------------------------------  114 (306)
T ss_dssp             -SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT----------------------------------
T ss_pred             -CCceeEEE--cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC----------------------------------
Confidence             45788898  6888866654432 2 3555666666554332210                                  


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeec--CCCcccCCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLT  267 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~  267 (457)
                                                .......++..+++..+++. .++.|+.+|.......+.....  .........
T Consensus       115 --------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~  168 (306)
T 2p4o_A          115 --------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  168 (306)
T ss_dssp             --------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             --------------------------CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence                                      01112233444455455555 6888888887621111110000  000011111


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccC-CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      .....+  +|++..++++-...+.|..||+.. ++..  ....+..              ......++++++|++.++..
T Consensus       169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~--------------~~~P~gi~vd~dG~l~va~~  230 (306)
T 2p4o_A          169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVE--------------QTNIDDFAFDVEGNLYGATH  230 (306)
T ss_dssp             CSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEEEE--------------SCCCSSEEEBTTCCEEEECB
T ss_pred             CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEec--------------cCCCCCeEECCCCCEEEEeC
Confidence            234555  788734555566788999999875 3211  0111111              12356689999998766654


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc---CCCcEEEEEeCCC
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS---GDGLHFATGSYSN  406 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~d~~~l~s~~~dg  406 (457)
                      . +.|.++|..  ++............             ..++++|.   ||+..|+..+..+
T Consensus       231 ~~~~V~~~~~~--G~~~~~~~~~~~~~-------------~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          231 IYNSVVRIAPD--RSTTIIAQAEQGVI-------------GSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TTCCEEEECTT--CCEEEEECGGGTCT-------------TEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCCeEEEECCC--CCEEEEeecccccC-------------CceEEEEecccCCCCEEEEECCCC
Confidence            4 889999874  44432211111100             01589998   8877777665543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.67  E-value=5.8e-05  Score=69.43  Aligned_cols=151  Identities=13%  Similarity=0.088  Sum_probs=84.7

Q ss_pred             CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC--Cc---e-EEEEEecCCccEEEEEccCCeEEEEEccCCee
Q 012721          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (457)
Q Consensus       230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~---i-~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~  302 (457)
                      +..++.+ .++.|..+|.. .++..-.......  .+..  ..   + .....  .+ ..++.++.++.+..+|.++++.
T Consensus       188 ~~~v~~g~~~g~l~~~d~~-tG~~~w~~~~~~~--~~~~~~~~~~~~~~~p~~--~~-~~v~~~~~~g~l~~~d~~tG~~  261 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLME-QGQMIWQQRISQA--TGSTEIDRLSDVDTTPVV--VN-GVVFALAYNGNLTALDLRSGQI  261 (376)
T ss_dssp             TTEEEECCTTTEEEEEETT-TCCEEEEEECCC-------------CCCCCCEE--ET-TEEEEECTTSCEEEEETTTCCE
T ss_pred             CCEEEEEcCCCEEEEEECC-CCcEEEEEecccC--CCCcccccccccCCCcEE--EC-CEEEEEecCcEEEEEECCCCcE
Confidence            3466677 89999999998 4444322211100  0000  00   0 01111  13 4677778899999999998864


Q ss_pred             eccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCC
Q 012721          303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN  381 (457)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (457)
                      .      +.. .            ......+...  +..|+.++ ++.|..+|..+ ++.+...........        
T Consensus       262 ~------w~~-~------------~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~--------  311 (376)
T 3q7m_A          262 M------WKR-E------------LGSVNDFIVD--GNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRLL--------  311 (376)
T ss_dssp             E------EEE-C------------CCCEEEEEEE--TTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSCC--------
T ss_pred             E------eec-c------------CCCCCCceEE--CCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCcc--------
Confidence            3      221 0            0123334333  44555554 58999999976 666554431111100        


Q ss_pred             CCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          382 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       382 ~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                            .....  .+..|+.++.+|.|+.+|..++ +.......
T Consensus       312 ------~~~~~--~~~~l~v~~~~g~l~~~d~~tG-~~~~~~~~  346 (376)
T 3q7m_A          312 ------TSPVL--YNGNLVVGDSEGYLHWINVEDG-RFVAQQKV  346 (376)
T ss_dssp             ------CCCEE--ETTEEEEECTTSEEEEEETTTC-CEEEEEEC
T ss_pred             ------cCCEE--ECCEEEEEeCCCeEEEEECCCC-cEEEEEec
Confidence                  12233  3467888999999999999999 45554544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.64  E-value=2.9e-06  Score=80.65  Aligned_cols=181  Identities=8%  Similarity=-0.008  Sum_probs=103.4

Q ss_pred             CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---------------CeEEEEEccCCe
Q 012721          237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---------------GFVRLVDMRQSA  301 (457)
Q Consensus       237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---------------g~i~lwd~~~~~  301 (457)
                      .++.+.+.|.++ .+....+.+     .+   ....++++|+| +++++.+.+               ..|.+.|....+
T Consensus       173 ~~~~vtvID~~t-~~v~~qI~V-----gg---~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~  242 (595)
T 1fwx_A          173 YVNVFTAVDADK-WEVAWQVLV-----SG---NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  242 (595)
T ss_dssp             EEEEEEEEETTT-TEEEEEEEE-----SS---CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             cCceEEEEECCC-CeEEEEEEe-----CC---CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence            356899999984 444433221     12   23456789998 777666644               235666654321


Q ss_pred             ee--------ccccccccccccccCc-ccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCC----------
Q 012721          302 LC--------DHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST----------  360 (457)
Q Consensus       302 ~~--------~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~----------  360 (457)
                      ..        ...+.+++........ ...+. -.....++.++|||+++++++.  .+|.++|+.+ .+          
T Consensus       243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~  320 (595)
T 1fwx_A          243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPR  320 (595)
T ss_dssp             HHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGG
T ss_pred             EeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcc
Confidence            10        0112222220000000 00111 1234568999999999998763  9999999974 21          


Q ss_pred             --ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC---------CceeeEEecCCCc
Q 012721          361 --PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SAGGITVEAGKNE  429 (457)
Q Consensus       361 --~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~---------~~~~~~~~~~~~~  429 (457)
                        .........++                ..++|+|||...++.--|+.|.+||+.++         .+.+.++..|-.|
T Consensus       321 ~~v~~~v~vG~gP----------------~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp  384 (595)
T 1fwx_A          321 SAVVAEPELGLGP----------------LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP  384 (595)
T ss_dssp             GGEEECCBCCSCE----------------EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred             cceEEEcCCCCCc----------------ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence              12222222222                58999999943344556999999999872         1456666666544


Q ss_pred             -----ceeeeeccCCcceecc
Q 012721          430 -----NRKPILQAAPRARRSS  445 (457)
Q Consensus       430 -----v~~~~~~p~~~~~~~~  445 (457)
                           .....++|||.-..++
T Consensus       385 Gh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          385 GHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             EEEEETTTTSTTCCSSEEEEE
T ss_pred             ccceeccceEeCCCCCEEEEc
Confidence                 2445678888877763

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.63  E-value=3.1e-05  Score=66.52  Aligned_cols=211  Identities=9%  Similarity=0.023  Sum_probs=123.9

Q ss_pred             EEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          116 INRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       116 V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ...+.|  ++++.++++.+.  ++.|.+.|..+++....+....                                    
T Consensus        23 ~~Gl~~--~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~------------------------------------   64 (266)
T 2iwa_A           23 TQGLVY--AENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD------------------------------------   64 (266)
T ss_dssp             EEEEEE--CSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT------------------------------------
T ss_pred             cccEEE--eCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC------------------------------------
Confidence            678999  676655555443  6899999999998776544211                                    


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                                             + .....+++. .+...++. .++.+.++|.. ..+.+..+...    .+  .   .
T Consensus        65 -----------------------~-~fgeGi~~~-g~~lyv~t~~~~~v~viD~~-t~~v~~~i~~g----~~--~---g  109 (266)
T 2iwa_A           65 -----------------------S-YFGEGLTLL-NEKLYQVVWLKNIGFIYDRR-TLSNIKNFTHQ----MK--D---G  109 (266)
T ss_dssp             -----------------------T-CCEEEEEEE-TTEEEEEETTCSEEEEEETT-TTEEEEEEECC----SS--S---C
T ss_pred             -----------------------C-cceEEEEEe-CCEEEEEEecCCEEEEEECC-CCcEEEEEECC----CC--C---e
Confidence                                   0 111234454 23344445 89999999998 55566554322    01  1   1


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEE
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  351 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~  351 (457)
                      ..++++| ..++++..++.|.++|..+.+..    ..+.. ...+       ..-...+.+.|. +|+..+.... +.|.
T Consensus       110 ~glt~Dg-~~l~vs~gs~~l~viD~~t~~v~----~~I~V-g~~~-------~p~~~~nele~~-dg~lyvn~~~~~~V~  175 (266)
T 2iwa_A          110 WGLATDG-KILYGSDGTSILYEIDPHTFKLI----KKHNV-KYNG-------HRVIRLNELEYI-NGEVWANIWQTDCIA  175 (266)
T ss_dssp             CEEEECS-SSEEEECSSSEEEEECTTTCCEE----EEEEC-EETT-------EECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEEECC-CEEEEECCCCeEEEEECCCCcEE----EEEEE-CCCC-------cccccceeEEEE-CCEEEEecCCCCeEE
Confidence            2355677 54555567899999999886544    22221 0000       001236778887 6754444433 8999


Q ss_pred             EEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEEecCCC
Q 012721          352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       352 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw~~~~~  416 (457)
                      +.|..+ ++.+..+..................  ....++|+|+++ +++++...+.+++-++...
T Consensus       176 vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~--v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          176 RISAKD-GTLLGWILLPNLRKKLIDEGFRDID--VLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEETTT-CCEEEEEECHHHHHHHHHTTCTTCC--CEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEECCC-CcEEEEEECCCcccccccccccccC--ceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999986 7888777643110000000000000  015899999976 5556667889999888765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.63  E-value=2.2e-05  Score=67.54  Aligned_cols=215  Identities=7%  Similarity=-0.015  Sum_probs=126.8

Q ss_pred             ccCC--ceEEEEECCCCCEEEEEeC--CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           30 QDVD--IVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        30 ~h~~--~V~~~~~s~~~~~latg~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      .|..  ....++|++++.+.++.+.  ++.|.++|+.+++..                           ..+.-...   
T Consensus        16 p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~---------------------------~~i~l~~~---   65 (266)
T 2iwa_A           16 PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE---------------------------NIHKMDDS---   65 (266)
T ss_dssp             ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE---------------------------EEEECCTT---
T ss_pred             ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE---------------------------EEEecCCC---
Confidence            3543  3678999998765555443  578999999988752                           22211110   


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                              .-...+.+  . .+.+.++.-.++.+.++|..+.+....+... .                           
T Consensus        66 --------~fgeGi~~--~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~---------------------------  106 (266)
T 2iwa_A           66 --------YFGEGLTL--L-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M---------------------------  106 (266)
T ss_dssp             --------CCEEEEEE--E-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-S---------------------------
T ss_pred             --------cceEEEEE--e-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-C---------------------------
Confidence                    11234555  2 2334444557899999999988766554321 0                           


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                                                    +   .  ...+++|++.++.+ .++.|.++|.. ..+....+.+..  -.
T Consensus       107 ------------------------------~---~--g~glt~Dg~~l~vs~gs~~l~viD~~-t~~v~~~I~Vg~--~~  148 (266)
T 2iwa_A          107 ------------------------------K---D--GWGLATDGKILYGSDGTSILYEIDPH-TFKLIKKHNVKY--NG  148 (266)
T ss_dssp             ------------------------------S---S--CCEEEECSSSEEEECSSSEEEEECTT-TCCEEEEEECEE--TT
T ss_pred             ------------------------------C---C--eEEEEECCCEEEEECCCCeEEEEECC-CCcEEEEEEECC--CC
Confidence                                          0   1  12244578888888 88999999998 445554443220  00


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      ..-..+..+.|. ++ .+.+....++.|.+.|..+++...    .+......+.....-..-....+.++|+|+++.++.
T Consensus       149 ~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~----~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV  222 (266)
T 2iwa_A          149 HRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLG----WILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV  222 (266)
T ss_dssp             EECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEE----EEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred             cccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEE----EEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence            111236778888 66 777777778999999999987542    221100000000000000135689999999876665


Q ss_pred             -Eec-CcEEEEeccC
Q 012721          345 -RDY-MNLKLWDIRM  357 (457)
Q Consensus       345 -~~~-~~i~~wd~~~  357 (457)
                       +.. +.+...++..
T Consensus       223 Tgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          223 TGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EETTCSEEEEEEEEE
T ss_pred             ECCCCCeEEEEEEec
Confidence             444 8888888864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.56  E-value=0.00033  Score=64.48  Aligned_cols=176  Identities=10%  Similarity=0.025  Sum_probs=100.1

Q ss_pred             eeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-CeEEEEEc
Q 012721          221 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDM  297 (457)
Q Consensus       221 v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~lwd~  297 (457)
                      ...+++.+.+..|+. - ..+.|.+.+++ ......+       +.........++++|.+..++++-... +.|..+++
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~~~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBTT-SCSCEEE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCceEEe-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence            356778775555544 4 67889988887 3322222       122335578999998763455554445 78888887


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeecccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKL  375 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~  375 (457)
                      ......    .+...             ....-..|+++|++..|..++.  +.|..+|+.  +.....+.......+  
T Consensus       233 dG~~~~----~~~~~-------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~P--  291 (386)
T 3v65_B          233 DGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPHP--  291 (386)
T ss_dssp             TSCSCE----EEECS-------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCSSE--
T ss_pred             CCCCcE----EEEEC-------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCCCc--
Confidence            653211    11111             0134678999988777776653  889889886  333222221111000  


Q ss_pred             ccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceee-eeccCC
Q 012721          376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-ILQAAP  439 (457)
Q Consensus       376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~-~~~p~~  439 (457)
                                  ..+++. ++..+++-...+.|..++..+|+. ..++.........+ .++|..
T Consensus       292 ------------~giav~-~~~ly~td~~~~~V~~~~~~~G~~-~~~i~~~~~~p~gi~v~~~~~  342 (386)
T 3v65_B          292 ------------FAITVF-EDSLYWTDWHTKSINSANKFTGKN-QEIIRNKLHFPMDIHTLHPQR  342 (386)
T ss_dssp             ------------EEEEEE-TTEEEEEETTTTEEEEEETTTCCS-CEEEECSCSCCCCEEEESGGG
T ss_pred             ------------eEEEEE-CCEEEEeeCCCCeEEEEECCCCcc-eEEEccCCCCCceEEEEchhc
Confidence                        367773 445555666678899999777743 44444333333334 445544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.54  E-value=0.00049  Score=62.42  Aligned_cols=177  Identities=11%  Similarity=0.031  Sum_probs=101.3

Q ss_pred             eeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-CeEEEEEc
Q 012721          221 INSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDM  297 (457)
Q Consensus       221 v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~lwd~  297 (457)
                      ...+++.+.+..|+ +- ..+.|.+.+++ ......+       ..........++++|.+..++++-... +.|..+++
T Consensus       118 p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~  189 (349)
T 3v64_C          118 PGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  189 (349)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEEE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence            45788887555554 44 77899999988 3322222       122334578999999663555555555 78888887


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeecccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKL  375 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~  375 (457)
                      ......    .+...             ....-..++++|++..|..++.  +.|..+|+.  +.....+.......+  
T Consensus       190 dG~~~~----~~~~~-------------~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~P--  248 (349)
T 3v64_C          190 DGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPHP--  248 (349)
T ss_dssp             TSCSCE----ESCCS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSSE--
T ss_pred             CCCCcE----EEEEC-------------CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCCCc--
Confidence            653211    11111             0134688999998877776653  889999986  333222221111000  


Q ss_pred             ccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCC
Q 012721          376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  439 (457)
Q Consensus       376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~  439 (457)
                                  ..+++. ++...++-...+.|..++..+|+........-..|.--..++|..
T Consensus       249 ------------~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~  299 (349)
T 3v64_C          249 ------------FAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQR  299 (349)
T ss_dssp             ------------EEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGG
T ss_pred             ------------eEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEcccc
Confidence                        367773 455555555678898888777744333333333344334455554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.52  E-value=8.8e-06  Score=73.30  Aligned_cols=176  Identities=12%  Similarity=0.034  Sum_probs=105.7

Q ss_pred             CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721          220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~  299 (457)
                      .+.++...+++.+++...++.|..+|.. .. ....+       ......+.++...+++ .+++ ++  +.|..+| .+
T Consensus       138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~-~~~~~-------~~~~~~~~~~~~d~~g-~l~v-~t--~~l~~~d-~~  203 (330)
T 3hxj_A          138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GT-EKWRF-------KTNDAITSAASIGKDG-TIYF-GS--DKVYAIN-PD  203 (330)
T ss_dssp             CCSCCEECTTSCEEEECTTSEEEEECTT-SC-EEEEE-------ECSSCCCSCCEECTTC-CEEE-ES--SSEEEEC-TT
T ss_pred             eeeeeEEcCCCEEEEEcCCCEEEEECCC-CC-EeEEE-------ecCCCceeeeEEcCCC-EEEE-Ee--CEEEEEC-CC
Confidence            3455666767775554488999999987 33 33222       1123445666777777 5444 44  7789999 55


Q ss_pred             CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccccccc
Q 012721          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  379 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  379 (457)
                      ++..      +..           ......+.++...++|.+.+...++.|..+|..  ++.+..+.......       
T Consensus       204 g~~~------~~~-----------~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~~~~~~~~-------  257 (330)
T 3hxj_A          204 GTEK------WNF-----------YAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRFKTGKRIE-------  257 (330)
T ss_dssp             SCEE------EEE-----------CCSSCCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEEECSSCCC-------
T ss_pred             CcEE------EEE-----------ccCCcceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEeeCCCCcc-------
Confidence            5322      111           001235777888888876665556888888753  55555554333221       


Q ss_pred             CCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccc
Q 012721          380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  446 (457)
Q Consensus       380 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~  446 (457)
                              ..+.+.+++ .|..++.+|.|..+|. ++ +...........+.++...+++.....+.
T Consensus       258 --------~~~~~~~~g-~l~v~t~~ggl~~~d~-~g-~~~~~~~~~~~~~~~~~~d~~g~l~~gt~  313 (330)
T 3hxj_A          258 --------SSPVIGNTD-TIYFGSYDGHLYAINP-DG-TEKWNFETGSWIIATPVIDENGTIYFGTR  313 (330)
T ss_dssp             --------SCCEECTTS-CEEEECTTCEEEEECT-TS-CEEEEEECSSCCCSCCEECTTCCEEEECT
T ss_pred             --------ccceEcCCC-eEEEecCCCCEEEECC-CC-cEEEEEEcCCccccceEEcCCCEEEEEcC
Confidence                    245555555 4666888888999995 56 44455554555667777767776655533

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.49  E-value=4.5e-05  Score=75.83  Aligned_cols=92  Identities=9%  Similarity=0.022  Sum_probs=59.8

Q ss_pred             CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeec
Q 012721          290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH  368 (457)
Q Consensus       290 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~  368 (457)
                      |.|..||+.+++..      +.. .           +..++....+..++.+++.++ ++.+++||.++ ++.+..+...
T Consensus       457 g~l~A~D~~tG~~~------W~~-~-----------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~  517 (677)
T 1kb0_A          457 GRLLAWDPVAQKAA------WSV-E-----------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTG  517 (677)
T ss_dssp             EEEEEEETTTTEEE------EEE-E-----------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             cEEEEEeCCCCcEE------eec-C-----------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCC
Confidence            78999999988643      222 0           112334445666777887776 49999999987 8888888765


Q ss_pred             cccccccccccCCCCccccceEEEcCCCcEEE-EEeC----------------CCcEEEEecC
Q 012721          369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY----------------SNLLRIFSHG  414 (457)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~----------------dg~i~iw~~~  414 (457)
                      .....              .-+.|..+|+.++ ..+.                .+.+..|.+.
T Consensus       518 ~~~~~--------------~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          518 TGVVA--------------APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             SCCCS--------------CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             CCccc--------------CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence            54321              2467777886444 3222                3577778776

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.48  E-value=0.00043  Score=59.06  Aligned_cols=220  Identities=11%  Similarity=0.138  Sum_probs=124.5

Q ss_pred             CcEEEEEEEecCCCC-EEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                      ..+..++|.  +++. ++++...++.|...|.. ++....+.+.                                    
T Consensus        27 ~~lSGla~~--~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~------------------------------------   67 (255)
T 3qqz_A           27 NNISSLTWS--AQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD------------------------------------   67 (255)
T ss_dssp             SCEEEEEEE--TTTTEEEEEEETTEEEEEEETT-CCEEEEEECS------------------------------------
T ss_pred             cCcceeEEe--CCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC------------------------------------
Confidence            569999995  5544 55557778888888887 6655443211                                    


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc--eeeeeecCCCcccCCCCc
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~  269 (457)
                                              -....-.+++.+++.++++. .++.+.++++.....  .......... .......
T Consensus        68 ------------------------g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~-~~~~N~g  122 (255)
T 3qqz_A           68 ------------------------FVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQ-ESPTNCG  122 (255)
T ss_dssp             ------------------------SCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCS-SCCCSSC
T ss_pred             ------------------------CCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccc-cccccCC
Confidence                                    11346678888888877777 889999999874443  1222221100 1123455


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-  347 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-  347 (457)
                      ...++|+|.+ +.|.++.+.....+|.+.. ........+... ..   ...  ..+...+.+++++|....|..-+ . 
T Consensus       123 ~EGLA~d~~~-~~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~-~~---~~~--~~~~~d~S~l~~dp~tg~lliLS~~s  194 (255)
T 3qqz_A          123 FEGLAYSRQD-HTFWFFKEKNPIEVYKVNG-LLSSNELHISKD-KA---LQR--QFTLDDVSGAEFNQQKNTLLVLSHES  194 (255)
T ss_dssp             CEEEEEETTT-TEEEEEEESSSEEEEEEES-TTCSSCCEEEEC-HH---HHH--TCCSSCCCEEEEETTTTEEEEEETTT
T ss_pred             cceEEEeCCC-CEEEEEECcCCceEEEEcc-cccCCceeeecc-hh---hcc--ccccCCceeEEEcCCCCeEEEEECCC
Confidence            7899999998 6666666554555655541 100001111110 00   000  00123578999999755555443 3 


Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      ..+..+|..  ++.+..+.-..+.-...      ..+-.--.++|.++|+ |+..++-+.++.+.-.
T Consensus       195 ~~L~~~d~~--g~~~~~~~L~~g~~~l~------~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          195 RALQEVTLV--GEVIGEMSLTKGSRGLS------HNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             TEEEEECTT--CCEEEEEECSTTGGGCS------SCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred             CeEEEEcCC--CCEEEEEEcCCccCCcc------cccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence            888888875  56665554332210000      0000014799999998 5555887877777543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.48  E-value=0.00032  Score=62.37  Aligned_cols=187  Identities=11%  Similarity=0.076  Sum_probs=102.9

Q ss_pred             CeeEEEeCCCCCEEEEe-CCC--eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          220 NINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      ....+++.++++++++. ...  .|..+|.. .+....+...     . .......++..+++ ..+++-..++.|..+|
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~~~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d  144 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTVETLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLID  144 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCEEEEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeEEEEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence            46789999999977765 332  46667765 4443333221     1 11223445555555 5566555689999999


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCc--eeEeeeccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTP--VATFKIHEHLR  372 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~--~~~~~~~~~~~  372 (457)
                      ...++...   .....  ...  .......-.....+  +|++++|..++ . +.|..+++...++.  ...+...... 
T Consensus       145 ~~~~~~~v---~~~~~--~~~--~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P-  214 (306)
T 2p4o_A          145 VVQPSGSI---WLEHP--MLA--RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-  214 (306)
T ss_dssp             TTTTEEEE---EEECG--GGS--CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC-
T ss_pred             CCCCcEeE---EEECC--ccc--cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC-
Confidence            87542100   00000  000  00000001223445  78888777664 3 89999998632221  1111111111 


Q ss_pred             cccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeE--EecCCCcceeeeec---cCCcc
Q 012721          373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT--VEAGKNENRKPILQ---AAPRA  441 (457)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~v~~~~~~---p~~~~  441 (457)
                                     ..++++++|+++++....+.|.+++.. + +....  +........+++|.   |++..
T Consensus       215 ---------------~gi~vd~dG~l~va~~~~~~V~~~~~~-G-~~~~~~~~~~~~~~p~~~a~~g~~~d~~~  271 (306)
T 2p4o_A          215 ---------------DDFAFDVEGNLYGATHIYNSVVRIAPD-R-STTIIAQAEQGVIGSTAVAFGQTEGDCTA  271 (306)
T ss_dssp             ---------------SSEEEBTTCCEEEECBTTCCEEEECTT-C-CEEEEECGGGTCTTEEEEEECCSTTTTTE
T ss_pred             ---------------CCeEECCCCCEEEEeCCCCeEEEECCC-C-CEEEEeecccccCCceEEEEecccCCCCE
Confidence                           479999999987777778899999975 5 33222  22223457888998   77543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.46  E-value=5e-05  Score=64.52  Aligned_cols=193  Identities=8%  Similarity=0.096  Sum_probs=114.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCC--eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           34 IVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      -...+.|+ ++.++.+.+.+|  .|+++|+++++..                           ..+.-.           
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~---------------------------~~~~l~-----------   84 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL---------------------------QQIELG-----------   84 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE---------------------------EEEECC-----------
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE---------------------------EEEecC-----------
Confidence            34789998 677777777766  8999999988752                           222111           


Q ss_pred             ccCcE--EEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          112 IEEKI--NRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       112 ~~~~V--~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                        ...  -.+..    .++.|.. .-.++.+.+||..+.+....+....                               
T Consensus        85 --~~~FgeGit~----~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-------------------------------  127 (262)
T 3nol_A           85 --KRYFGEGISD----WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-------------------------------  127 (262)
T ss_dssp             --TTCCEEEEEE----ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-------------------------------
T ss_pred             --CccceeEEEE----eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-------------------------------
Confidence              122  23444    2334444 4468899999999887776554221                               


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                     .=..++  ++++.|+.+ .++.|.++|.. ..+....+.+.   ..+..
T Consensus       128 -------------------------------eG~glt--~dg~~L~~SdGs~~i~~iDp~-T~~v~~~I~V~---~~g~~  170 (262)
T 3nol_A          128 -------------------------------EGWGLT--HNDQYLIMSDGTPVLRFLDPE-SLTPVRTITVT---AHGEE  170 (262)
T ss_dssp             -------------------------------CCCCEE--ECSSCEEECCSSSEEEEECTT-TCSEEEEEECE---ETTEE
T ss_pred             -------------------------------CceEEe--cCCCEEEEECCCCeEEEEcCC-CCeEEEEEEec---cCCcc
Confidence                                           112233  467777777 78899999998 45555544321   11111


Q ss_pred             -CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          268 -EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       268 -~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                       ..+..+.|. +| .+.+..-.++.|.+.|.++++..    ..+....-.+... ....-....+.++|+|+++.|+..+
T Consensus       171 ~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~----~~Id~~~L~~~~~-~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          171 LPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVT----GIIDLNGILAEAG-PLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEE----EEEECTTGGGGSC-SCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEE----EEEECCcCccccc-cccCcCCceEEEEEcCCCCEEEEEC
Confidence             334567776 66 77777778899999999998765    2222100000000 0001123578999999877666544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.39  E-value=0.0014  Score=66.74  Aligned_cols=198  Identities=11%  Similarity=0.055  Sum_probs=111.7

Q ss_pred             CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCC-cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      ..|.++...++|.+.+...+ .|.+||.. .+.... +...+. ...-....|.++...++| . |..|+.++-|..|+.
T Consensus       263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~-~~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~~  337 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEG-TDSFAS-YSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYHP  337 (795)
T ss_dssp             SBEEEEEECTTSCEEEEESS-CEEEEETT-TTEEEE-ECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEECG
T ss_pred             CeEEEEEEcCCCCEEEEeCC-hhheEcCC-CCeEEE-EecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeCC
Confidence            46899999888877666555 68889977 333322 211110 011134679999999988 5 455667777888987


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecc-ccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE-HLRPKLC  376 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~  376 (457)
                      .+....     .+..   .+. ..  .-....|.++...++|.+.+...++-|..||..+ + ....+.... .....  
T Consensus       338 ~~~~~~-----~~~~---~~~-~~--~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~-~~~~~~~~~~~~~~~--  402 (795)
T 4a2l_A          338 IRNRFK-----NIRN---IPY-KN--SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-Q-RFTSYTLQEDESARG--  402 (795)
T ss_dssp             GGGSSE-----EECC---CTT-SS--SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-C-CEEEECCC------C--
T ss_pred             Ccccce-----EEcC---CCC-CC--CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-C-cEEEEecCCCCcccC--
Confidence            654311     1110   000 00  0013569999999988766644457889998764 2 233332111 00000  


Q ss_pred             cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe-----cCCCcceeeeeccCCccee
Q 012721          377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-----AGKNENRKPILQAAPRARR  443 (457)
Q Consensus       377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~~  443 (457)
                        ....   .|.++...+++..|..|+.++-|.+||..+++ . ..+.     .....|.++...+++..-.
T Consensus       403 --l~~~---~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~-~-~~~~~~~~~l~~~~v~~i~~d~~g~lwi  467 (795)
T 4a2l_A          403 --IGSN---NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ-V-ENFNQRNSQLVNENVYAILPDGEGNLWL  467 (795)
T ss_dssp             --CSCS---CEEEEEEETTTTEEEEEETTTEEEEEETTTCC-E-EEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred             --CCCc---cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc-E-EEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence              0001   12578888888856667777779999988772 2 2222     1234566666666555433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.39  E-value=0.00014  Score=72.12  Aligned_cols=185  Identities=14%  Similarity=0.129  Sum_probs=102.1

Q ss_pred             eEEEeCCCCCEEEEe-CCC-------------------eEEEEEcCCCcceeeeeecCCCcccC--CCCceEEEEEecCC
Q 012721          222 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIY  279 (457)
Q Consensus       222 ~~~~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~~p~~  279 (457)
                      ..++++|+...++.+ .++                   .|..+|.+ .++..-.+...+.....  ...+.....+..+|
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~-tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G  311 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD-TGKLAWHYQVTPGDSWDFTATQQITLAELNIDG  311 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC-CCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence            457788877788777 655                   48999998 44444333221110000  11233333344466


Q ss_pred             cc---EEEEEccCCeEEEEEccCCeeeccccc---cccccc----ccc--------Cccc--ceecccc--ceEEEEEcc
Q 012721          280 CN---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAA----ESH--------GSKS--FFTEIIA--SISDIKFAN  337 (457)
Q Consensus       280 ~~---~l~~~~~dg~i~lwd~~~~~~~~~~~~---~~~~~~----~~~--------~~~~--~~~~h~~--~v~~~~~s~  337 (457)
                       +   .++.++.+|.+.++|..+++.......   .+....    ..+        ..+.  .+.+..+  .-..++++|
T Consensus       312 -~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp  390 (668)
T 1kv9_A          312 -KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP  390 (668)
T ss_dssp             -EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             -cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC
Confidence             4   688999999999999999976521000   000000    000        0000  0000000  011256777


Q ss_pred             CCCeEEEE------------------------------------ec-CcEEEEeccCCCCceeEeeeccccccccccccC
Q 012721          338 DGQHLLSR------------------------------------DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN  380 (457)
Q Consensus       338 ~g~~l~s~------------------------------------~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (457)
                      +..+++..                                    .. |.|..||+.+ ++.+-........         
T Consensus       391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~---------  460 (668)
T 1kv9_A          391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW---------  460 (668)
T ss_dssp             TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC---------
T ss_pred             CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC---------
Confidence            65554431                                    12 7788999976 6766555543322         


Q ss_pred             CCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          381 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       381 ~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                             ....+...+.+++.++.|+.++.||.++| +.+..++..
T Consensus       461 -------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG-~~l~~~~~~  498 (668)
T 1kv9_A          461 -------NGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQFEAQ  498 (668)
T ss_dssp             -------CCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECS
T ss_pred             -------cCceeEeCCCEEEEECCcccchhhhhhcC-hhheEecCC
Confidence                   23445557788999999999999999999 555555443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.38  E-value=5.2e-05  Score=64.40  Aligned_cols=178  Identities=13%  Similarity=0.074  Sum_probs=108.5

Q ss_pred             CeeEEEeCCCCCEEEEe-CCC--eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          220 NINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      ....+.|+ ++.++.+. .+|  .|+.+|++ .++....+.+.        .........+++..+.+..-.++.+.+||
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~--------~~~FgeGit~~g~~ly~ltw~~~~v~v~D  113 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIE-SGKTLQQIELG--------KRYFGEGISDWKDKIVGLTWKNGLGFVWN  113 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTT-TCCEEEEEECC--------TTCCEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECC-CCcEEEEEecC--------CccceeEEEEeCCEEEEEEeeCCEEEEEE
Confidence            34788998 66555554 554  99999999 56666554332        12222222333425555556799999999


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeecccccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL  375 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~  375 (457)
                      ..+.+..    ..+..              ..  ....++++++.|+.++. +.|.++|..+ .+.+..+........  
T Consensus       114 ~~t~~~~----~ti~~--------------~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~--  170 (262)
T 3nol_A          114 IRNLRQV----RSFNY--------------DG--EGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEE--  170 (262)
T ss_dssp             TTTCCEE----EEEEC--------------SS--CCCCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEE--
T ss_pred             CccCcEE----EEEEC--------------CC--CceEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCcc--
Confidence            9987654    33322              01  11233466777776653 8899999986 677777665332110  


Q ss_pred             ccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC------------CCcceeeeeccCCc
Q 012721          376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG------------KNENRKPILQAAPR  440 (457)
Q Consensus       376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~------------~~~v~~~~~~p~~~  440 (457)
                              +.....+.|. +|...+..-.++.|.+.|.+++ +....+...            ....+.+++.|+..
T Consensus       171 --------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~  237 (262)
T 3nol_A          171 --------LPELNELEWV-DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH  237 (262)
T ss_dssp             --------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred             --------ccccceeEEE-CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence                    0000246676 7765555556889999999999 555555432            12458889998754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.37  E-value=0.00015  Score=73.19  Aligned_cols=73  Identities=14%  Similarity=0.123  Sum_probs=42.2

Q ss_pred             CeeEEEeCCCCCEEEEe----CCCeEEEEEcCCCccee--eeeecCCCcccCCCCceEEEEEecCCccEEEEEccC----
Q 012721          220 NINSISNNSDCETFVSA----DDLRINLWNLEISDQCF--NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----  289 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d----  289 (457)
                      ....+.|+|||++|+..    ....|+++|+.......  ..+      .........++.|+..+ .+++....+    
T Consensus       272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l------~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~  344 (751)
T 2xe4_A          272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV------RPREKGVRYDVQMHGTS-HLVILTNEGGAVN  344 (751)
T ss_dssp             CEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES------SCCCTTCCEEEEEETTT-EEEEEECTTTCTT
T ss_pred             eEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe------ecCCCCceEEEeeeeCC-EEEEEeCCCCCCC
Confidence            45678999999988764    34578888987431112  221      22233455666655444 555555444    


Q ss_pred             CeEEEEEccC
Q 012721          290 GFVRLVDMRQ  299 (457)
Q Consensus       290 g~i~lwd~~~  299 (457)
                      ..|..+|+.+
T Consensus       345 ~~L~~~d~~~  354 (751)
T 2xe4_A          345 HKLLIAPRGQ  354 (751)
T ss_dssp             CEEEEEETTS
T ss_pred             cEEEEEcCCC
Confidence            3566666654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.36  E-value=5.8e-05  Score=67.83  Aligned_cols=219  Identities=8%  Similarity=-0.054  Sum_probs=116.0

Q ss_pred             CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCcc
Q 012721          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  205 (457)
Q Consensus       126 ~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  205 (457)
                      ++ .+..++.++.|..+|.. ++.......... .+.++.. ..++.++....              ++.+..++.+   
T Consensus       107 ~~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~-~~~g~l~vgt~--------------~~~l~~~d~~---  165 (330)
T 3hxj_A          107 ED-ILYVTSMDGHLYAINTD-GTEKWRFKTKKA-IYATPIV-SEDGTIYVGSN--------------DNYLYAINPD---  165 (330)
T ss_dssp             TT-EEEEECTTSEEEEECTT-SCEEEEEECSSC-CCSCCEE-CTTSCEEEECT--------------TSEEEEECTT---
T ss_pred             CC-EEEEEecCCEEEEEcCC-CCEEEEEcCCCc-eeeeeEE-cCCCEEEEEcC--------------CCEEEEECCC---
Confidence            55 45667777888888888 665555543221 1111111 11122211111              1234444443   


Q ss_pred             ccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEE
Q 012721          206 HARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  285 (457)
Q Consensus       206 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~  285 (457)
                       .+.+..+ ......+.++...+++.+++.+  +.|..+| . .+......       ......+.++...++| . |..
T Consensus       166 -g~~~~~~-~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~-~g~~~~~~-------~~~~~~~~~~~~~~~g-~-l~v  230 (330)
T 3hxj_A          166 -GTEKWRF-KTNDAITSAASIGKDGTIYFGS--DKVYAIN-P-DGTEKWNF-------YAGYWTVTRPAISEDG-T-IYV  230 (330)
T ss_dssp             -SCEEEEE-ECSSCCCSCCEECTTCCEEEES--SSEEEEC-T-TSCEEEEE-------CCSSCCCSCCEECTTS-C-EEE
T ss_pred             -CCEeEEE-ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-C-CCcEEEEE-------ccCCcceeceEECCCC-e-EEE
Confidence             1111111 1223456677777788766655  8899999 4 33333221       2233457777888876 4 455


Q ss_pred             EccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEe
Q 012721          286 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF  365 (457)
Q Consensus       286 ~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~  365 (457)
                      ++.++.|..+|... +..    ..+..             ....+..+.+.+++.+.+...++.|..+|. . ++.+..+
T Consensus       231 ~t~~~gl~~~~~~g-~~~----~~~~~-------------~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~-g~~~~~~  290 (330)
T 3hxj_A          231 TSLDGHLYAINPDG-TEK----WRFKT-------------GKRIESSPVIGNTDTIYFGSYDGHLYAINP-D-GTEKWNF  290 (330)
T ss_dssp             EETTTEEEEECTTS-CEE----EEEEC-------------SSCCCSCCEECTTSCEEEECTTCEEEEECT-T-SCEEEEE
T ss_pred             EcCCCeEEEECCCC-CEe----EEeeC-------------CCCccccceEcCCCeEEEecCCCCEEEECC-C-CcEEEEE
Confidence            66678888887533 221    11111             011233455566675555444578999986 3 5666555


Q ss_pred             eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      ......+               .++...+++. |..++.+|.+++...+..
T Consensus       291 ~~~~~~~---------------~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          291 ETGSWII---------------ATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             ECSSCCC---------------SCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             EcCCccc---------------cceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence            4433222               4566767776 556888999998887644

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.35  E-value=0.0004  Score=58.45  Aligned_cols=209  Identities=8%  Similarity=0.047  Sum_probs=118.4

Q ss_pred             cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCC--CeEEEEEecccceeEEEeecCCCceeeeeecc
Q 012721           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  168 (457)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (457)
                      ++.+.++ .|++.          .-...+.|.  . +.++.+.+.+  ..|+.+|+.+++...........         
T Consensus         9 ~~v~~~~-phd~~----------~ftqGL~~~--~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---------   65 (243)
T 3mbr_X            9 YRVVKRY-PHDTT----------AFTEGLFYL--R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---------   65 (243)
T ss_dssp             EEEEEEE-ECCTT----------CCEEEEEEE--T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC---------
T ss_pred             eEEEEEc-CCCCc----------cccccEEEE--C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc---------
Confidence            4455555 66643          557889993  3 5566666665  48999999999887665432110         


Q ss_pred             ccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcC
Q 012721          169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  247 (457)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~  247 (457)
                                                                         .--.+++. ++++++.. .++.+.+||.+
T Consensus        66 ---------------------------------------------------fgeGi~~~-~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           66 ---------------------------------------------------FGAGIVAW-RDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             ---------------------------------------------------CEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred             ---------------------------------------------------ceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence                                                               01123333 23344445 89999999998


Q ss_pred             CCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  327 (457)
                       ..+.+..+...     +. +  ..+  .+++ ..|+.+..++.|.++|..+.+..    +.+.. ...+.       .-
T Consensus        94 -tl~~~~ti~~~-----~~-G--wgl--t~dg-~~L~vSdgs~~l~~iDp~t~~~~----~~I~V-~~~g~-------~~  149 (243)
T 3mbr_X           94 -TLTPRARFRYP-----GE-G--WAL--TSDD-SHLYMSDGTAVIRKLDPDTLQQV----GSIKV-TAGGR-------PL  149 (243)
T ss_dssp             -TTEEEEEEECS-----SC-C--CEE--EECS-SCEEEECSSSEEEEECTTTCCEE----EEEEC-EETTE-------EC
T ss_pred             -cCcEEEEEeCC-----CC-c--eEE--eeCC-CEEEEECCCCeEEEEeCCCCeEE----EEEEE-ccCCc-------cc
Confidence             56666654322     11 1  233  3566 55555566899999999987654    22221 00000       01


Q ss_pred             cceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccc-cCCCCccccceEEEcCCCcEEEEEe
Q 012721          328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                      ..++.+.+. +|+..+..- ...|.+.|..+ ++.+..+....-.-.. ... .....+.  ..++++|+++.|+..+
T Consensus       150 ~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~~-~~~~~~~~~vl--NGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          150 DNLNELEWV-NGELLANVWLTSRIARIDPAS-GKVVAWIDLQALVPDA-DALTDSTNDVL--NGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEEECTTT-CBEEEEEECGGGSTTT-TSCCCTTSSCE--EEEEEETTTTEEEEEE
T ss_pred             ccceeeEEe-CCEEEEEECCCCeEEEEECCC-CCEEEEEECCcCcccc-ccccCCcCCce--EEEEEcCCCCEEEEEC
Confidence            245566665 566444432 38999999986 7887777644211000 000 0001111  6899999866555444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.35  E-value=8.1e-05  Score=74.17  Aligned_cols=81  Identities=7%  Similarity=-0.028  Sum_probs=52.0

Q ss_pred             CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeee
Q 012721          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI  367 (457)
Q Consensus       289 dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~  367 (457)
                      +|.|..||+.+++..      +.. .           +..++....+...+.+++.++ |+.++.||.++ ++.+.++..
T Consensus       454 ~g~l~A~D~~tG~~~------W~~-~-----------~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t-G~~lw~~~~  514 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAA------WEV-P-----------YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADT-GEKLWEQPA  514 (689)
T ss_dssp             EEEEEEEETTTTEEE------EEE-E-----------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             ceeEEEEECCCCCeE------eEc-c-----------CCCCccCccceECCCEEEEECCCCcEEEEECCC-CccceeeeC
Confidence            377899999888643      221 0           011222334555677888876 49999999987 888888876


Q ss_pred             ccccccccccccCCCCccccceEEEcCCCc-EEEEE
Q 012721          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG  402 (457)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~  402 (457)
                      ......              .-+.|..||+ |+++.
T Consensus       515 ~~~~~~--------------~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          515 ASGVMA--------------APVTYSVDGEQYVTFM  536 (689)
T ss_dssp             SSCCCS--------------CCEEEEETTEEEEEEE
T ss_pred             CCCccc--------------CceEEEECCEEEEEEE
Confidence            654321              2467778887 44443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.34  E-value=0.00022  Score=65.47  Aligned_cols=135  Identities=9%  Similarity=-0.032  Sum_probs=79.5

Q ss_pred             CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (457)
Q Consensus       230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~  308 (457)
                      +..++.+ .++.+..+|.+ .++..-...         ......+...  + ..++.++.++.|..+|..+++..     
T Consensus       239 ~~~v~~~~~~g~l~~~d~~-tG~~~w~~~---------~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~~-----  300 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLR-SGQIMWKRE---------LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVTL-----  300 (376)
T ss_dssp             TTEEEEECTTSCEEEEETT-TCCEEEEEC---------CCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCEE-----
T ss_pred             CCEEEEEecCcEEEEEECC-CCcEEeecc---------CCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcEE-----
Confidence            4556666 89999999998 444332211         1223344433  4 56777788999999999988643     


Q ss_pred             cccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCcccc
Q 012721          309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  387 (457)
Q Consensus       309 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  387 (457)
                       +.. ....         ...+......  +..|+.++ +|.|.++|..+ ++.+.........+.              
T Consensus       301 -w~~-~~~~---------~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~t-G~~~~~~~~~~~~~~--------------  352 (376)
T 3q7m_A          301 -WTQ-SDLL---------HRLLTSPVLY--NGNLVVGDSEGYLHWINVED-GRFVAQQKVDSSGFQ--------------  352 (376)
T ss_dssp             -EEE-CTTT---------TSCCCCCEEE--TTEEEEECTTSEEEEEETTT-CCEEEEEECCTTCBC--------------
T ss_pred             -Eee-cccC---------CCcccCCEEE--CCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCcce--------------
Confidence             221 0000         0112222222  44566665 49999999986 777766654332211              


Q ss_pred             ceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          388 FECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       388 ~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      .....  .+..|+.++.+|.|+.|+
T Consensus       353 ~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          353 TEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             SCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             eCCEE--ECCEEEEEeCCCEEEEEe
Confidence            12222  245678899999999987

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.31  E-value=0.00028  Score=68.59  Aligned_cols=77  Identities=6%  Similarity=-0.042  Sum_probs=45.7

Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  427 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  427 (457)
                      +.|..||+.+ ++.+-++......                ....+...+..++.++.||.|+.||.++| +.+..++...
T Consensus       444 g~l~a~D~~t-G~~~W~~~~~~~~----------------~~~~~~t~gg~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~  505 (571)
T 2ad6_A          444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDG-KELWNFKMPS  505 (571)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred             CeEEEEECCC-CCEEEEecCCCCc----------------cceeEEECCCEEEEEcCCCeEEEEECCCC-CEEEEEeCCC
Confidence            6788888875 6666555433221                12223334567778999999999999999 4555554332


Q ss_pred             C-cceeeeeccCCcce
Q 012721          428 N-ENRKPILQAAPRAR  442 (457)
Q Consensus       428 ~-~v~~~~~~p~~~~~  442 (457)
                      . ....+.+.+++...
T Consensus       506 ~~~~~p~~~~~~G~~y  521 (571)
T 2ad6_A          506 GGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             CCCSCCEEEEETTEEE
T ss_pred             CcEeeeEEEEECCEEE
Confidence            2 12233344555433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.30  E-value=0.00094  Score=56.98  Aligned_cols=217  Identities=11%  Similarity=0.142  Sum_probs=120.7

Q ss_pred             CceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeee--eccCCcccccccc
Q 012721           33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYLKS  109 (457)
Q Consensus        33 ~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~~  109 (457)
                      +.+..++|+|+++ ++++...++.|...|.. ++.                           +..  +.+.         
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v---------------------------~~~i~l~g~---------   69 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL---------------------------IRTIPLDFV---------   69 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---------------------------EEEEECSSC---------
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---------------------------EEEEecCCC---------
Confidence            4799999999765 55557778888888876 432                           122  2221         


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEE-eecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                          ...-.|++  .+++.++++.-.++.+.++++......... ....                               
T Consensus        70 ----~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~-------------------------------  112 (255)
T 3qqz_A           70 ----KDLETIEY--IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKI-------------------------------  112 (255)
T ss_dssp             ----SSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEEC-------------------------------
T ss_pred             ----CChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecc-------------------------------
Confidence                23667888  567766666556788888887654321111 0000                               


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC--CcceeeeeecCCCcccC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~  265 (457)
                                          .+.  ..........++|+|+++.|.++ ......+|.++.  ....+.+.+.+...-..
T Consensus       113 --------------------~~~--~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~  170 (255)
T 3qqz_A          113 --------------------PLQ--ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF  170 (255)
T ss_dssp             --------------------CCS--SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred             --------------------ccc--cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence                                000  01234557899999988777766 433344444431  11122222110000011


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      +...+.+++++|....+++.+..+..|..+|.... ..    ..+.. ...   ..-+..--..-..|+|.++|++.+++
T Consensus       171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~----~~~~L-~~g---~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VI----GEMSL-TKG---SRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             CSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EE----EEEEC-STT---GGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EE----EEEEc-CCc---cCCcccccCCCCeeEECCCCCEEEEc
Confidence            23457899999987578888888999999997754 22    11111 000   00000001356789999999865564


Q ss_pred             ecCcEEEEe
Q 012721          346 DYMNLKLWD  354 (457)
Q Consensus       346 ~~~~i~~wd  354 (457)
                      .-+.++.+.
T Consensus       242 E~n~~y~f~  250 (255)
T 3qqz_A          242 EPNRFYRFT  250 (255)
T ss_dssp             TTTEEEEEE
T ss_pred             CCceEEEEE
Confidence            336555554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.27  E-value=0.00085  Score=60.08  Aligned_cols=182  Identities=9%  Similarity=-0.001  Sum_probs=102.7

Q ss_pred             CeeEEEeCC-CCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccC-CCCceEEEEEec-CCccEEEEEcc--------
Q 012721          220 NINSISNNS-DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHP-IYCNLLAYSSS--------  288 (457)
Q Consensus       220 ~v~~~~~~~-~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p-~~~~~l~~~~~--------  288 (457)
                      ....+++.+ +++++++...+.|..+|.. .+.. ..+..   ...+ .......+++.+ +| ++.++-..        
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~-~g~~-~~~~~---~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSE-GGHA-TQLAT---SVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTT-CEEC-EEEES---EETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCC-CCEE-EEecc---cCCCCcccccceEEEecCCC-EEEEECCccccccccc
Confidence            467889987 6655555455568888876 3322 22110   0111 123467899999 88 76665432        


Q ss_pred             ---------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccC
Q 012721          289 ---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRM  357 (457)
Q Consensus       289 ---------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~  357 (457)
                               ++.|..||..+++..    .....              ......++++|+|++|..++ . +.|..|++..
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~~~~----~~~~~--------------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTKETT----LLLKE--------------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTTEEE----EEEEE--------------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             ceehcccCCCceEEEEeCCCCEEE----EeccC--------------CccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence                     367888887665422    11111              12346799999998776653 3 8999999863


Q ss_pred             CC-CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC----------CCcEEEEecCCCCceeeEEecC
Q 012721          358 DS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       358 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~----------dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                      .. .....+....++                ..+++.++|++.++...          .+.|..+|.. + +....+...
T Consensus       217 ~~~~~~~~~~~~~gP----------------~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G-~~~~~~~~~  278 (322)
T 2fp8_A          217 PKKGTAEVLVKIPNP----------------GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-G-NILEVIPLP  278 (322)
T ss_dssp             TTTTCEEEEEECSSE----------------EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-S-CEEEEEECC
T ss_pred             CcCCccceEEeCCCC----------------CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-C-CEEEEEECC
Confidence            11 111122111111                47899999987766544          4667788764 4 444444433


Q ss_pred             C----CcceeeeeccCCcceec
Q 012721          427 K----NENRKPILQAAPRARRS  444 (457)
Q Consensus       427 ~----~~v~~~~~~p~~~~~~~  444 (457)
                      .    ..+..+.+ .++.....
T Consensus       279 ~g~~~~~~~~~~~-~~g~L~v~  299 (322)
T 2fp8_A          279 PPFAGEHFEQIQE-HDGLLYIG  299 (322)
T ss_dssp             TTTTTSCCCEEEE-ETTEEEEE
T ss_pred             CCCccccceEEEE-eCCEEEEe
Confidence            2    33455555 34444443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.26  E-value=0.0059  Score=62.13  Aligned_cols=286  Identities=10%  Similarity=0.078  Sum_probs=160.6

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec-cCCccccccc-c
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLK-S  109 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~-~  109 (457)
                      ...|.++...++|++-+ |+.++-|..|+..++...                            .+. ....    .. .
T Consensus       356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~----------------------------~~~~~~~~----~~~~  402 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFT----------------------------SYTLQEDE----SARG  402 (795)
T ss_dssp             CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEE----------------------------EECCC----------C
T ss_pred             CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEE----------------------------EEecCCCC----cccC
Confidence            45799999999887654 666656888887654321                            110 0000    00 0


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                      + ....|.++..  ..++..|..|+.++-|.+|+..+++........  .                              
T Consensus       403 l-~~~~v~~i~~--d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~--~------------------------------  447 (795)
T 4a2l_A          403 I-GSNNIKAVYV--DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN--S------------------------------  447 (795)
T ss_dssp             C-SCSCEEEEEE--ETTTTEEEEEETTTEEEEEETTTCCEEEECTTT--S------------------------------
T ss_pred             C-CCccEEEEEE--cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC--C------------------------------
Confidence            0 0146888887  567764677787777999998877654321000  0                              


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (457)
                                               ......|.++...+++.+.+... +.|.+||.. .+..... ......-.-....
T Consensus       448 -------------------------~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~-~~~~~~~-~~~~~~~~~~~~~  499 (795)
T 4a2l_A          448 -------------------------QLVNENVYAILPDGEGNLWLGTL-SALVRFNPE-QRSFTTI-EKEKDGTPVVSKQ  499 (795)
T ss_dssp             -------------------------CCSCSCEEEEEECSSSCEEEEES-SCEEEEETT-TTEEEEC-CBCTTCCBCCCCC
T ss_pred             -------------------------CcCCCeeEEEEECCCCCEEEEec-CceeEEeCC-CCeEEEc-cccccccccCCce
Confidence                                     11234688998888887666556 568889987 3333222 1000000112367


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCc
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  349 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~  349 (457)
                      |.++...++| .+.+.. . +-|..||..+++.  . ......   .      -......|.++..+++|.+.++.. +.
T Consensus       500 i~~i~~d~~g-~lWigt-~-~Gl~~~~~~~~~~--~-~~~~~~---~------~~l~~~~i~~i~~d~~g~lWigT~-~G  563 (795)
T 4a2l_A          500 ITTLFRDSHK-RLWIGG-E-EGLSVFKQEGLDI--Q-KASILP---V------SNVTKLFTNCIYEASNGIIWVGTR-EG  563 (795)
T ss_dssp             EEEEEECTTC-CEEEEE-S-SCEEEEEEETTEE--E-ECCCSC---S------CGGGGSCEEEEEECTTSCEEEEES-SC
T ss_pred             EEEEEECCCC-CEEEEe-C-CceEEEeCCCCeE--E-EecCCC---C------CCCCCCeeEEEEECCCCCEEEEeC-CC
Confidence            8999999888 655544 4 4588888876542  0 000000   0      011235789999999998766554 36


Q ss_pred             EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCc
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  429 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~  429 (457)
                      +..||...  .....+....+..        .+.   +.++...++|.+.+++ . +-|..|+..++  ....+....+.
T Consensus       564 l~~~d~~~--~~~~~~~~~~gl~--------~~~---i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~--~~~~~~~~dGl  626 (795)
T 4a2l_A          564 FYCFNEKD--KQIKRYNTTNGLP--------NNV---VYGILEDSFGRLWLST-N-RGISCFNPETE--KFRNFTESDGL  626 (795)
T ss_dssp             EEEEETTT--TEEEEECGGGTCS--------CSC---EEEEEECTTSCEEEEE-T-TEEEEEETTTT--EEEEECGGGTC
T ss_pred             ceeECCCC--CcEEEeCCCCCCc--------hhh---eEEEEECCCCCEEEEc-C-CceEEEcCCCC--cEEEcCCcCCC
Confidence            78888753  3333443222211        111   2577788888876655 3 45778888766  23333322221


Q ss_pred             ----c--eeeeeccCCcceeccc
Q 012721          430 ----N--RKPILQAAPRARRSSL  446 (457)
Q Consensus       430 ----v--~~~~~~p~~~~~~~~~  446 (457)
                          +  .++...+++....++.
T Consensus       627 ~~~~f~~~~~~~~~~G~l~~g~~  649 (795)
T 4a2l_A          627 QSNQFNTASYCRTSVGQMYFGGI  649 (795)
T ss_dssp             SCSCEEEEEEEECTTSCEEEEET
T ss_pred             ccccCccCceeECCCCeEEEecC
Confidence                1  3445556665555543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=0.0013  Score=61.37  Aligned_cols=72  Identities=11%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             CeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCcc-EEEEEccCCeEEEEE
Q 012721          220 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd  296 (457)
                      ....++++| ++.++++- .++.|..++.. .+.......     .. .......++|+|++ + ++++-...+.|..++
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~-~~~~~~~~~-----~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~  298 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFT-TQETTPLFT-----IQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSD  298 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETT-TTEEEEEEE-----CS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcEEEEEE-----cC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEe
Confidence            345788999 67766666 88999999987 343322221     11 12456789999999 7 556656788999988


Q ss_pred             ccC
Q 012721          297 MRQ  299 (457)
Q Consensus       297 ~~~  299 (457)
                      ...
T Consensus       299 ~d~  301 (430)
T 3tc9_A          299 YDW  301 (430)
T ss_dssp             EET
T ss_pred             CCc
Confidence            764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.25  E-value=0.00012  Score=62.29  Aligned_cols=178  Identities=12%  Similarity=-0.038  Sum_probs=109.4

Q ss_pred             CCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      .....+.|+ ++.++.+. .++.|+++|++ .++....+ +.+      ......+++  ++..+.+..-.++.+.+||.
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~-Tgkv~~~~-l~~------~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~  123 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLE-SAQPVWME-RLG------NIFAEGLAS--DGERLYQLTWTEGLLFTWSG  123 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSS-CSSCSEEE-ECT------TCCEEEEEE--CSSCEEEEESSSCEEEEEET
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECC-CCcEEeEE-CCC------CcceeEEEE--eCCEEEEEEccCCEEEEEEC
Confidence            345788887 34455555 88889999999 55555543 221      111123444  44356666668999999999


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  376 (457)
                      .+.+..    ..+..              ...-+.++  ++++.|+.++ .+.|.++|..+ .+.+..+........   
T Consensus       124 ~Tl~~~----~ti~~--------------~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~---  179 (268)
T 3nok_A          124 MPPQRE----RTTRY--------------SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQP---  179 (268)
T ss_dssp             TTTEEE----EEEEC--------------SSCCCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEE---
T ss_pred             CcCcEE----EEEeC--------------CCceeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcc---
Confidence            998655    23322              01113333  5677777665 49999999986 677777665432211   


Q ss_pred             cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC-------------CCcceeeeeccCCc
Q 012721          377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-------------KNENRKPILQAAPR  440 (457)
Q Consensus       377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~  440 (457)
                             +..+..+.|. +|...+..-.+..|.+.|.+++ +....+...             .+..+.+++.|++.
T Consensus       180 -------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~  247 (268)
T 3nok_A          180 -------VELINELECA-NGVIYANIWHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG  247 (268)
T ss_dssp             -------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred             -------cccccccEEe-CCEEEEEECCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCC
Confidence                   0001346666 7765555546789999999999 554544422             13458899998754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.24  E-value=0.00044  Score=58.73  Aligned_cols=197  Identities=11%  Similarity=0.028  Sum_probs=113.9

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      .-...+.|  + ++.++.+.+.+|.|+++|+.+++..... .....                                  
T Consensus        55 ~ftqGL~~--~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~----------------------------------   96 (268)
T 3nok_A           55 AFTQGLVF--H-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI----------------------------------   96 (268)
T ss_dssp             CCEEEEEE--E-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC----------------------------------
T ss_pred             cccceEEE--E-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc----------------------------------
Confidence            34578888  3 4667778888899999999999876554 22100                                  


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                                                .-..+++.. +++++.. .++.+.+||.+ ..+.+..+...     +. +  ..
T Consensus        97 --------------------------FgeGit~~g-~~Ly~ltw~~~~v~V~D~~-Tl~~~~ti~~~-----~e-G--wG  140 (268)
T 3nok_A           97 --------------------------FAEGLASDG-ERLYQLTWTEGLLFTWSGM-PPQRERTTRYS-----GE-G--WG  140 (268)
T ss_dssp             --------------------------CEEEEEECS-SCEEEEESSSCEEEEEETT-TTEEEEEEECS-----SC-C--CC
T ss_pred             --------------------------ceeEEEEeC-CEEEEEEccCCEEEEEECC-cCcEEEEEeCC-----Cc-e--eE
Confidence                                      112244442 3444445 89999999998 56666665322     11 1  23


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEE
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  351 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~  351 (457)
                      ++  +++ ..|+.+..++.|.++|..+.+..    ..+.. ...+.       .-..++.+.|. +|+..+..-. +.|.
T Consensus       141 Lt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~----~~I~V-~~~g~-------~v~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          141 LC--YWN-GKLVRSDGGTMLTFHEPDGFALV----GAVQV-KLRGQ-------PVELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             EE--EET-TEEEEECSSSEEEEECTTTCCEE----EEEEC-EETTE-------ECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             Ee--cCC-CEEEEECCCCEEEEEcCCCCeEE----EEEEe-CCCCc-------ccccccccEEe-CCEEEEEECCCCeEE
Confidence            33  566 66666667999999999987654    22221 00000       01245667776 6754444333 8999


Q ss_pred             EEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEe
Q 012721          352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS  403 (457)
Q Consensus       352 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~  403 (457)
                      +.|..+ ++.+..+....-.............+.  ..++++|+++ +++||-
T Consensus       205 vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~~vl--NGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          205 EIDPAT-GTVVGVIDASALTRAVAGQVTNPEAVL--NGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EECTTT-CBEEEEEECHHHHHHHTTTCCCTTCCE--EEEEECTTTCCEEEEET
T ss_pred             EEeCCC-CcEEEEEECCCCcccccccccCcCCce--EEEEEcCCCCEEEEeCC
Confidence            999986 788777764321000000000001111  5899999755 445554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.23  E-value=0.00041  Score=58.35  Aligned_cols=180  Identities=11%  Similarity=0.008  Sum_probs=108.3

Q ss_pred             CCCeeEEEeCCCCCEEEEe-C--CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721          218 DFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l  294 (457)
                      ......+.|++ +.++.+. .  +..|+.+|+. .++....+.+.     .+ ..--.+++.  +..+....-.++.+.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~-tgkv~~~~~l~-----~~-~fgeGi~~~--~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLE-TGRILQRAEVP-----PP-YFGAGIVAW--RDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETT-TCCEEEEEECC-----TT-CCEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECC-CCCEEEEEeCC-----CC-cceeEEEEe--CCEEEEEEeeCCEEEE
Confidence            34567899986 4444444 4  3599999999 66666654332     11 111233443  3256666678999999


Q ss_pred             EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeecccccc
Q 012721          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRP  373 (457)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~  373 (457)
                      ||..+.+..    ..+..              ...=+.++  ++++.|+.++. +.|.++|..+ .+.+..+........
T Consensus        90 ~D~~tl~~~----~ti~~--------------~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~  148 (243)
T 3mbr_X           90 YDLATLTPR----ARFRY--------------PGEGWALT--SDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRP  148 (243)
T ss_dssp             EETTTTEEE----EEEEC--------------SSCCCEEE--ECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTEE
T ss_pred             EECCcCcEE----EEEeC--------------CCCceEEe--eCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcc
Confidence            999987655    33322              01113443  56776666544 8999999986 677777665432110


Q ss_pred             ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC-------------CCcceeeeeccCCc
Q 012721          374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-------------KNENRKPILQAAPR  440 (457)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~  440 (457)
                                +..+..+.|. +|+..+..-.+..|.+.|.+++ +....+...             ....+.+++.|+..
T Consensus       149 ----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~  216 (243)
T 3mbr_X          149 ----------LDNLNELEWV-NGELLANVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD  216 (243)
T ss_dssp             ----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred             ----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence                      0001245555 6665555546789999999999 554544422             13457888888653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.17  E-value=0.0034  Score=55.90  Aligned_cols=164  Identities=10%  Similarity=-0.037  Sum_probs=95.5

Q ss_pred             CeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-CeEEEEE
Q 012721          220 NINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~lwd  296 (457)
                      ....+++.+.+..| ++- .++.|.+++++ ......++       .........++++|.+..++++.... +.|..++
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~  149 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEEE-------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence            34678887655444 454 78899999987 33322221       12234578999999662455544333 7888888


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      +.....     +.+..            ..-.....+++++++..|..++.  +.|..+|++  +.....+........ 
T Consensus       150 ~dG~~~-----~~~~~------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~~~~-  209 (316)
T 1ijq_A          150 LNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA-  209 (316)
T ss_dssp             TTSCCE-----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTS-
T ss_pred             CCCCCe-----EEEEE------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCCccC-
Confidence            764321     11100            00135678999998877776653  789999986  333333322110000 


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                              ..   ..+++. .+..+++-...+.|..++..+++. ...+.
T Consensus       210 --------~P---~giav~-~~~ly~~d~~~~~V~~~~~~~g~~-~~~i~  246 (316)
T 1ijq_A          210 --------HP---FSLAVF-EDKVFWTDIINEAIFSANRLTGSD-VNLLA  246 (316)
T ss_dssp             --------SE---EEEEEE-TTEEEEEETTTTEEEEEETTTCCC-CEEEE
T ss_pred             --------Cc---EEEEEE-CCEEEEEECCCCeEEEEeCCCCcc-eEEEe
Confidence                    00   366774 355555566678899999877743 33343

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.16  E-value=0.00037  Score=69.24  Aligned_cols=33  Identities=12%  Similarity=0.211  Sum_probs=23.8

Q ss_pred             EEEEEEecCCCCEEEEee-CCCeEEEEEecccceeE
Q 012721          117 NRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKK  151 (457)
Q Consensus       117 ~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~~~~~~  151 (457)
                      .++++  ..++.+++.|+ .+..+.+||..+++...
T Consensus       246 ~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~W~~  279 (656)
T 1k3i_A          246 PGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIP  279 (656)
T ss_dssp             CEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred             ccccC--CCCCCEEEeCCCCCCceEEecCcCCceeE
Confidence            34555  47888888887 45679999988776543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.16  E-value=0.0022  Score=62.40  Aligned_cols=79  Identities=15%  Similarity=0.090  Sum_probs=48.8

Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  427 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  427 (457)
                      |.|..||+.+ ++.+-+.......                ..-.....+.+++.|+.|+.++.||.++| +.+-.++...
T Consensus       466 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagglvf~g~~dg~l~A~D~~tG-~~lW~~~~~~  527 (582)
T 1flg_A          466 GSLRAMDPVS-GKVVWEHKEHLPL----------------WAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGS  527 (582)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCC----------------CSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred             ceEEEEECCC-CCEEEEecCCCCC----------------cccceEeCCCEEEEECCCCcEEEEECCCC-CEEEEecCCC
Confidence            7788899876 6666555433221                11122224667888999999999999999 5555555433


Q ss_pred             Cc-ceeeeeccCCcceec
Q 012721          428 NE-NRKPILQAAPRARRS  444 (457)
Q Consensus       428 ~~-v~~~~~~p~~~~~~~  444 (457)
                      .. ...+.+..++.....
T Consensus       528 g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          528 GIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             CCCSCCEEEEETTEEEEE
T ss_pred             CcccCceEEEECCEEEEE
Confidence            22 233566667654443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.10  E-value=0.005  Score=57.45  Aligned_cols=182  Identities=8%  Similarity=0.025  Sum_probs=92.6

Q ss_pred             CeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcce-eeeeecCCCcccCCCCceEEEEEecCCcc-EEEEEccCCeEEEE
Q 012721          220 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLV  295 (457)
Q Consensus       220 ~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lw  295 (457)
                      ....++++| ++.++++- .++.|+.+|.. .+.. ..++...      .......++|+|++ + ++++-...+.|+.+
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~-~g~~~~~~~~~~------~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~  300 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPA-TGTLTEEEVMMD------TKGSNFHIVWHPTG-DWAYIIYNGKHCIYRV  300 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTT-TCCEEEEEEECS------CCSSCEEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECC-CCeEEEEEeccC------CCCCcccEEEeCCC-CEEEEEeCCCCEEEEE
Confidence            345688898 67666666 78899999987 3433 2222111      11223579999999 6 55555667899998


Q ss_pred             EccC--CeeeccccccccccccccCccc--ceeccccceEEEEE---------ccCCCeEEEEec-CcEEEEeccCCCCc
Q 012721          296 DMRQ--SALCDHSARILRDAAESHGSKS--FFTEIIASISDIKF---------ANDGQHLLSRDY-MNLKLWDIRMDSTP  361 (457)
Q Consensus       296 d~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~---------s~~g~~l~s~~~-~~i~~wd~~~~~~~  361 (457)
                      +...  +...  ....+...........  .....-..-..+++         .++|.+.++-.. +.|+.++..  +. 
T Consensus       301 ~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G~-  375 (433)
T 4hw6_A          301 DYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--GR-  375 (433)
T ss_dssp             EBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--SE-
T ss_pred             eCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--CC-
Confidence            8653  2110  0011111000000000  00001123567888         666766665444 888888752  43 


Q ss_pred             eeEeeeccc--cccccccccCCC-CccccceEEEc-CCCcEEEEEeCCCcEEEEecC
Q 012721          362 VATFKIHEH--LRPKLCDLYNND-SIFDKFECSVS-GDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       362 ~~~~~~~~~--~~~~~~~~~~~~-~~~~v~~~~~s-~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      +..+.+...  ............ ....-..++++ +++.++++-...++|+.++++
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            333333211  000000000000 01112578888 566666666667788877764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.05  E-value=0.0076  Score=55.61  Aligned_cols=178  Identities=8%  Similarity=-0.033  Sum_probs=100.9

Q ss_pred             CeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc-CCeEEEEE
Q 012721          220 NINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~lwd  296 (457)
                      ....+++.+.+..| ++- ..+.|.+.+++ ......++       .........|+++|.+..++.+-.. .+.|...+
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l~-------~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~  231 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  231 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTT-TCSEEEEE-------ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCC-CCceEEEE-------eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence            56678888744444 444 78899999988 33332221       2233457899999976244444322 47788888


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      +......    .+...             .-.....|++++++..|..++.  +.|..+|++  +.....+........ 
T Consensus       232 ~dG~~~~----~~~~~-------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~l~-  291 (400)
T 3p5b_L          232 LNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA-  291 (400)
T ss_dssp             TTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCCEEEEECSSTTS-
T ss_pred             CCCCccE----EEEEC-------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--CCccEEEEeCCCCCC-
Confidence            7653211    11111             0135688999998888877653  789989886  333333322111000 


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC-cceeeeeccC
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN-ENRKPILQAA  438 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~v~~~~~~p~  438 (457)
                              ..   ..+++. .+.++.+-...+.|..++..+|+. ..++..... |.--..++|.
T Consensus       292 --------~P---~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~-~~~i~~~~~~p~~i~v~~~~  343 (400)
T 3p5b_L          292 --------HP---FSLAVF-EDKVFWTDIINEAIFSANRLTGSD-VNLLAENLLSPEDMVLFHNL  343 (400)
T ss_dssp             --------SE---EEEEEE-TTEEEEEESSSCSEEEEESSSCCC-CEEEECSCSCEEEEEEESGG
T ss_pred             --------CC---EEEEEe-CCEEEEecCCCCeEEEEEcCCCCc-eEEEecCCCCCceEEEEeec
Confidence                    00   356663 344555556678899999888844 344443333 3333345544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.04  E-value=0.0015  Score=63.55  Aligned_cols=46  Identities=9%  Similarity=-0.055  Sum_probs=30.0

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCceeeEEecCC-CcceeeeeccCCcc
Q 012721          395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPRA  441 (457)
Q Consensus       395 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~  441 (457)
                      .+..++.++.|+.|+.||.++| +.+-.++... .....+.+..++..
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG-~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTG-DLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cCCEEEEECCCCeEEEEECCCC-CEEEEeeCCCCcEeccEEEEeCCEE
Confidence            5667778999999999999999 4444444322 22233455555544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.03  E-value=0.015  Score=58.39  Aligned_cols=179  Identities=9%  Similarity=-0.007  Sum_probs=102.6

Q ss_pred             CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-CeEEEEE
Q 012721          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~lwd  296 (457)
                      ....|++.+.+..|+.+  ..+.|.+.+++ ......+       +.........|+++|.+..++++-... +.|...+
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l-------~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~  543 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  543 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE-------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEE-------EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence            45678888777655554  78899999998 3332222       122334578999999762444443333 7888888


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeec-ccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH-EHLRP  373 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~-~~~~~  373 (457)
                      +......    .+...             .-.....|++++.+..|+.++.  +.|...++.  +.....+... .....
T Consensus       544 ~dG~~~~----~lv~~-------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l~~  604 (791)
T 3m0c_C          544 LNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLAH  604 (791)
T ss_dssp             TTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTSS
T ss_pred             cCCCceE----EEEeC-------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCccCC
Confidence            8754321    11111             1135788999988777776653  788888885  4443333221 11100


Q ss_pred             ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCC
Q 012721          374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  439 (457)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~  439 (457)
                                   .+.+++..+ .++++-...+.|...+..+|+....+......|..-..+||..
T Consensus       605 -------------P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~  656 (791)
T 3m0c_C          605 -------------PFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT  656 (791)
T ss_dssp             -------------EEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred             -------------CCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeecccc
Confidence                         035665332 3344444567888888888844433333333444444566543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.00  E-value=0.0073  Score=53.76  Aligned_cols=175  Identities=10%  Similarity=0.067  Sum_probs=99.0

Q ss_pred             CeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc--cCCeEEEE
Q 012721          220 NINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLV  295 (457)
Q Consensus       220 ~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~lw  295 (457)
                      ....+++.+.+..| ++- ..+.|.+++++ .... ..+      ..........++++|.+ ..|+...  ..+.|...
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~-~~l------~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~  150 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLR-KVL------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERA  150 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSC-EEE------ECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECC-CCcE-EEE------EeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEE
Confidence            34578887655444 444 77899999987 3322 221      12233557899999976 4444443  35788888


Q ss_pred             EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeEeeecccccc
Q 012721          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP  373 (457)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~  373 (457)
                      ++......    .+...             .-..-..++++|++..|..++ . +.|..+|++  +.....+.......+
T Consensus       151 ~~dG~~~~----~~~~~-------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~P  211 (318)
T 3sov_A          151 GMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPHP  211 (318)
T ss_dssp             ETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCSCE
T ss_pred             EcCCCCeE----EEEEC-------------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCCCc
Confidence            87643211    11111             013457899999877777665 3 889999986  333333321111100


Q ss_pred             ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC-CCcceeeeeccC
Q 012721          374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQAA  438 (457)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~p~  438 (457)
                                    ..+++.. +.++.+-...+.|..++..+|+.. ..+... ..|.--..++|.
T Consensus       212 --------------~glav~~-~~lywtd~~~~~V~~~~~~~G~~~-~~i~~~~~~P~~i~v~~~~  261 (318)
T 3sov_A          212 --------------FALTLFE-DILYWTDWSTHSILACNKYTGEGL-REIHSDIFSPMDIHAFSQQ  261 (318)
T ss_dssp             --------------EEEEEET-TEEEEEETTTTEEEEEETTTCCSC-EEEECCCSSCCCEEEECGG
T ss_pred             --------------eEEEEeC-CEEEEEecCCCeEEEEECCCCCce-EEEeCCCCCCcEEEEeccc
Confidence                          3566653 344455556788999999888443 333332 333333344554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.89  E-value=0.0069  Score=55.65  Aligned_cols=156  Identities=10%  Similarity=-0.025  Sum_probs=94.2

Q ss_pred             CeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          220 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      ....++|++.+..|+. - ..+.|+.++++ ......++       .........+++.+.+..++++-...+.|.+.++
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~-------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~  188 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL  188 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCEEEEE-------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBT
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecC-CCCcEEEE-------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC
Confidence            4778999976555554 4 78899999988 33332221       1122344678888765366666667788888887


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--c-CcEEEEeccCCCCceeEeeeccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~-~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      ......    .+...             .......++++|.+.+|...+  . +.|..++++  +.....+.......+ 
T Consensus       189 dg~~~~----~l~~~-------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~~P-  248 (386)
T 3v65_B          189 DGAHRK----VLLWQ-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLFWP-  248 (386)
T ss_dssp             TSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCSCE-
T ss_pred             CCCceE----EeecC-------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCCCe-
Confidence            653211    11111             113468899999877776554  3 567777765  443333322111100 


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCC
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  416 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~  416 (457)
                                   ..++|+|++..|+.+. ..+.|..+++...
T Consensus       249 -------------nGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          249 -------------NGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             -------------EEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             -------------eeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence                         4799998766665554 4677999988644

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=0.03  Score=56.82  Aligned_cols=190  Identities=9%  Similarity=0.002  Sum_probs=108.4

Q ss_pred             CCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      ...|.++...+++.+.+...++.|..+|.. .++... +...    ......|.++...+++ .+.+ |+. +-|..||.
T Consensus       406 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~~~~-~~~~----~~~~~~v~~i~~d~~g-~lwi-gt~-~Gl~~~~~  476 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWFGTYLGNISYYNTR-LKKFQI-IELE----KNELLDVRVFYEDKNK-KIWI-GTH-AGVFVIDL  476 (781)
T ss_dssp             CSBEEEEEECTTSCEEEEETTEEEEEECSS-SCEEEE-CCST----TTCCCCEEEEEECTTS-EEEE-EET-TEEEEEES
T ss_pred             CcceEEEEECCCCCEEEEeccCCEEEEcCC-CCcEEE-eccC----CCCCCeEEEEEECCCC-CEEE-EEC-CceEEEeC
Confidence            346889988888876665577788999876 333222 1100    1234678999888887 5444 444 55888998


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD  377 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  377 (457)
                      .+++..    .....  ...      ......|.++...++|.+.+....+-+..||...  .....+......      
T Consensus       477 ~~~~~~----~~~~~--~~~------~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~--~~~~~~~~~~~l------  536 (781)
T 3v9f_A          477 ASKKVI----HHYDT--SNS------QLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM--QLVRKFNQYEGF------  536 (781)
T ss_dssp             SSSSCC----EEECT--TTS------SCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC--CEEEEECTTTTC------
T ss_pred             CCCeEE----ecccC--ccc------ccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC--CeEEEccCCCCC------
Confidence            775321    11000  000      0012568999999999877765545577788753  333333321111      


Q ss_pred             ccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC----CCcceeeeeccCCcceec
Q 012721          378 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG----KNENRKPILQAAPRARRS  444 (457)
Q Consensus       378 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~~~  444 (457)
                        ...   .|.++...++|.+.++. .+|.|..||..+++  ...+...    ...+.++...+++..-.+
T Consensus       537 --~~~---~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~--~~~~~~~~gl~~~~i~~i~~d~~g~lW~~  599 (781)
T 3v9f_A          537 --CSN---TINQIYRSSKGQMWLAT-GEGLVCFPSARNFD--YQVFQRKEGLPNTHIRAISEDKNGNIWAS  599 (781)
T ss_dssp             --SCS---CEEEEEECTTSCEEEEE-TTEEEEESCTTTCC--CEEECGGGTCSCCCCCEEEECSSSCEEEE
T ss_pred             --CCC---eeEEEEECCCCCEEEEE-CCCceEEECCCCCc--EEEccccCCCCCceEEEEEECCCCCEEEE
Confidence              001   12577778888866544 46665888887762  2222211    124556666666655444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=0.03  Score=56.78  Aligned_cols=189  Identities=8%  Similarity=0.069  Sum_probs=106.4

Q ss_pred             CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEcc
Q 012721          219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~  298 (457)
                      ..|.++...+++.+.+...++-|..||.. .+. ...+. .+  .......|.++...+++ .+. .|+.++-|..+|..
T Consensus       363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~-~~~~~-~~--~~~~~~~v~~i~~d~~g-~lW-igt~~~Gl~~~~~~  435 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIGTDGGGINVFENG-KRV-AIYNK-EN--RELLSNSVLCSLKDSEG-NLW-FGTYLGNISYYNTR  435 (781)
T ss_dssp             SCEEEEEECTTSCEEEEEBSSCEEEEETT-EEE-EECC--------CCCSBEEEEEECTTS-CEE-EEETTEEEEEECSS
T ss_pred             cceEEEEEcCCCCEEEEeCCCcEEEEECC-CCe-EEEcc-CC--CCCCCcceEEEEECCCC-CEE-EEeccCCEEEEcCC
Confidence            46889998888876655567778889876 322 22111 00  12234678999888877 544 46666678899987


Q ss_pred             CCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccc
Q 012721          299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  378 (457)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  378 (457)
                      +++..     .+.. .         ......|.++...++|.+.+... +.|..+|... ++.. .+.......     +
T Consensus       436 ~~~~~-----~~~~-~---------~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~-~~~~-~~~~~~~~~-----~  492 (781)
T 3v9f_A          436 LKKFQ-----IIEL-E---------KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLAS-KKVI-HHYDTSNSQ-----L  492 (781)
T ss_dssp             SCEEE-----ECCS-T---------TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSS-SSCC-EEECTTTSS-----C
T ss_pred             CCcEE-----Eecc-C---------CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCC-CeEE-ecccCcccc-----c
Confidence            76432     1110 0         00125688999888887665544 6788898764 3322 222111000     0


Q ss_pred             cCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec-C---CCcceeeeeccCCcceec
Q 012721          379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-G---KNENRKPILQAAPRARRS  444 (457)
Q Consensus       379 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~---~~~v~~~~~~p~~~~~~~  444 (457)
                       ..   ..+.++...++|.+.+ |+.++-|..|+..++ . ...+.. +   ...|.++...+++..-.+
T Consensus       493 -~~---~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~  555 (781)
T 3v9f_A          493 -LE---NFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ-L-VRKFNQYEGFCSNTINQIYRSSKGQMWLA  555 (781)
T ss_dssp             -SC---SCEEEEEECTTCCEEE-EESSSCEEEECTTCC-E-EEEECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred             -cc---ceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC-e-EEEccCCCCCCCCeeEEEEECCCCCEEEE
Confidence             00   1125788888888665 444344778887765 2 222221 1   234566666666654433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.86  E-value=0.00078  Score=67.95  Aligned_cols=114  Identities=12%  Similarity=0.061  Sum_probs=70.6

Q ss_pred             CeeEEEeC-CCCCEEEEe--CC----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---
Q 012721          220 NINSISNN-SDCETFVSA--DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---  289 (457)
Q Consensus       220 ~v~~~~~~-~~~~~l~~~--~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---  289 (457)
                      .+...+|+ |||++|+.+  .+    ..|+++|+.+..+.+.      ..+.   .....++|+||| +.|+....|   
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~------~~~~---~~~~~~~WspDg-~~l~y~~~d~~~  244 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA------DKVS---GTNGEIVWGPDH-TSLFYVTKDETL  244 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC------CCEE---EECSCCEECSST-TEEEEEEECTTC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC------cccc---CceeeEEEecCC-CEEEEEEECCCC
Confidence            57789999 999998865  23    2599999984303211      0011   123467899999 777666654   


Q ss_pred             --CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---c-CcEEEEeccC
Q 012721          290 --GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRM  357 (457)
Q Consensus       290 --g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~-~~i~~wd~~~  357 (457)
                        ..|.++++.++....  ..++..            ........+.|+|||++|+...   . ..|+++|+..
T Consensus       245 ~~~~v~~~~lgt~~~~~--~lv~~~------------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSED--VCLYEE------------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CEEEEEEEETTSCGGGC--EEEEEC------------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             CCCEEEEEECCCCchhc--EEEEec------------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence              257778876643110  112211            0113456789999999988543   2 5688888864

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.85  E-value=0.044  Score=57.66  Aligned_cols=133  Identities=9%  Similarity=0.044  Sum_probs=72.6

Q ss_pred             CceEEEEE---ecCCccEEEEEc----------cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEE
Q 012721          268 EVITSAEF---HPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (457)
Q Consensus       268 ~~i~~v~~---~p~~~~~l~~~~----------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  334 (457)
                      +.+.+++.   ..+...+|++|.          ..|.|.+|++..+++.     .+..           ....+.+++++
T Consensus       829 E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~-----lv~~-----------~~v~g~v~al~  892 (1158)
T 3ei3_A          829 EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ-----TVAE-----------KEVKGAVYSMV  892 (1158)
T ss_dssp             EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE-----EEEE-----------EEESSCEEEEE
T ss_pred             cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE-----EEEE-----------EEcCCcCEEEe
Confidence            44555553   333236888875          3588999998754322     2111           12246788876


Q ss_pred             EccCCCeEEEEecCcEEEEeccCCCCcee-EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          335 FANDGQHLLSRDYMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       335 ~s~~g~~l~s~~~~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                      -- +| +|++|-..+|++|++.. .+.+. ....... +               ..+.....+++|+.|+.-..|.+...
T Consensus       893 ~~-~g-~Lla~ig~~l~vy~l~~-~~~L~~~~~~~~~-i---------------~~~~l~~~~~~I~vgD~~~Sv~~~~y  953 (1158)
T 3ei3_A          893 EF-NG-KLLASINSTVRLYEWTT-EKELRTECNHYNN-I---------------MALYLKTKGDFILVGDLMRSVLLLAY  953 (1158)
T ss_dssp             EE-TT-EEEEEETTEEEEEEECT-TSCEEEEEEECCC-S---------------CEEEEEEETTEEEEEESSBCEEEEEE
T ss_pred             ee-CC-EEEEEcCCEEEEEECCC-CceEEEEeecccc-E---------------EEEEEeccCCEEEEEEhhheEEEEEE
Confidence            44 35 66666668999999974 44443 1111111 1               22233335678888888777877665


Q ss_pred             CCCCceeeEEecCCC--cceeeee
Q 012721          414 GVGSAGGITVEAGKN--ENRKPIL  435 (457)
Q Consensus       414 ~~~~~~~~~~~~~~~--~v~~~~~  435 (457)
                      +.....+..+..+..  .++++.+
T Consensus       954 ~~~~~~L~~~a~D~~~~~vta~~~  977 (1158)
T 3ei3_A          954 KPMEGNFEEIARDFNPNWMSAVEI  977 (1158)
T ss_dssp             ETTTTEEEEEEECCSCBCEEEEEE
T ss_pred             EcCCCeEEEEEeecccccEEEEEE
Confidence            544334444443333  3444444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.83  E-value=0.016  Score=52.26  Aligned_cols=156  Identities=9%  Similarity=-0.039  Sum_probs=95.3

Q ss_pred             CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      ....++|++....|+.+  ..+.|..++++ ......++       .........+++.+.+..++++-...+.|.+.++
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~-------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~  145 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL  145 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecC-CCCceEEE-------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence            46789998765555544  78899999988 33322221       1122345688998755366677677889999998


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--c-CcEEEEeccCCCCceeEeeeccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~-~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      ......    .+...             .......++++|.+.+|...+  . +.|..++++  +.....+.......  
T Consensus       146 dG~~~~----~l~~~-------------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~~--  204 (349)
T 3v64_C          146 DGAHRK----VLLWQ-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLFW--  204 (349)
T ss_dssp             TSCSCE----EEECT-------------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCCSSCSC--
T ss_pred             CCCceE----EEEeC-------------CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCCC--
Confidence            754211    11111             113468899999776666544  3 667777765  43333332111110  


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCC
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  416 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~  416 (457)
                                  -..++++|++..|+.+. ..+.|..+++...
T Consensus       205 ------------PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          205 ------------PNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             ------------EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ------------cceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence                        05799998776666554 4678999998644

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.77  E-value=0.012  Score=54.82  Aligned_cols=172  Identities=9%  Similarity=-0.016  Sum_probs=89.8

Q ss_pred             CCeeEEEeCCCCCEEEEeCCC-----eEEEEEcCCCcce-eeeeecCCCcccCCCCceEEEEEec-CCccEEEEEccCCe
Q 012721          219 FNINSISNNSDCETFVSADDL-----RINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGF  291 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~~d~-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~  291 (457)
                      .....++++++++++++...+     .+...+.. .... ...       +. .......++++| ++ .++++-..++.
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~-------~~-~~~~P~giavd~~~G-~lyv~d~~~~~  251 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA-SGFTERLS-------LC-NARGAKTCAVHPQNG-KIYYTRYHHAM  251 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-GTTCCEEE-------EE-ECSSBCCCEECTTTC-CEEECBTTCSE
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECC-CCeecccc-------cc-ccCCCCEEEEeCCCC-eEEEEECCCCE
Confidence            357799999999955554321     23333332 1111 011       11 123346688999 66 76666667889


Q ss_pred             EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCC-CCc--eeEee
Q 012721          292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMD-STP--VATFK  366 (457)
Q Consensus       292 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~-~~~--~~~~~  366 (457)
                      |+.+|..++....   .++..   ..         ...-..++|+|+|++|..++ . +.|+.++.... +..  ...+.
T Consensus       252 V~~~d~~~g~~~~---~~~~~---~~---------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~a  316 (433)
T 4hw6_A          252 ISSYDPATGTLTE---EEVMM---DT---------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVC  316 (433)
T ss_dssp             EEEECTTTCCEEE---EEEEC---SC---------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEE
T ss_pred             EEEEECCCCeEEE---EEecc---CC---------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEE
Confidence            9999987654311   11111   00         11234699999999776654 3 88998887531 211  12222


Q ss_pred             eccccccccccccCCCCccccceEEE---------cCCCcEEEEEeCCCcEEEEecCCC
Q 012721          367 IHEHLRPKLCDLYNNDSIFDKFECSV---------SGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~v~~~~~---------s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      +...................-..+++         .+++.+.++-...++|+.++. +|
T Consensus       317 g~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          317 GQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             ECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             ecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            22000000000000000001146888         677777777667788999884 45

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.73  E-value=0.0088  Score=59.32  Aligned_cols=84  Identities=18%  Similarity=0.182  Sum_probs=47.8

Q ss_pred             EEEEecCCccEEEEEccCC-------------------eEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721          272 SAEFHPIYCNLLAYSSSRG-------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~~dg-------------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  332 (457)
                      .+++.|+. .+++.+..++                   .|..+|.++++..-.    ++.   .+...-.+. ...+...
T Consensus       234 ~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~----~~~---~~~~~wd~~-~~~~~~~  304 (668)
T 1kv9_A          234 SMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH----YQV---TPGDSWDFT-ATQQITL  304 (668)
T ss_dssp             CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE----EES---STTCCSCCC-CCSCEEE
T ss_pred             ceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE----eec---CCCcccccc-CCCCcEE
Confidence            46888887 7888887766                   389999999874411    111   000000000 0122222


Q ss_pred             EEEccCCC---eEEEEec-CcEEEEeccCCCCceeEe
Q 012721          333 IKFANDGQ---HLLSRDY-MNLKLWDIRMDSTPVATF  365 (457)
Q Consensus       333 ~~~s~~g~---~l~s~~~-~~i~~wd~~~~~~~~~~~  365 (457)
                      ..+..+|+   .++.++. |.++++|..+ ++++...
T Consensus       305 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~  340 (668)
T 1kv9_A          305 AELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAE  340 (668)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEE
T ss_pred             EEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccc
Confidence            23334665   5666665 9999999986 7776443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=0.017  Score=54.23  Aligned_cols=124  Identities=17%  Similarity=0.088  Sum_probs=68.7

Q ss_pred             CeeEEEe-------CCCCCEEEEe-CCC-------eEEEEEcCCCccee-----eeeecCCCcccCCCCceEEEEEecCC
Q 012721          220 NINSISN-------NSDCETFVSA-DDL-------RINLWNLEISDQCF-----NIVDMKPSNMDDLTEVITSAEFHPIY  279 (457)
Q Consensus       220 ~v~~~~~-------~~~~~~l~~~-~d~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~i~~v~~~p~~  279 (457)
                      ....++|       +++++.|+.+ ..+       .|.+++....+...     ..+.    .+    .....++++|++
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~----~~----~~p~giavdp~~  258 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA----AY----KQCNGATIHPIN  258 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE----EE----SCCCCEEECTTT
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec----cC----CCceEEEEcCCC
Confidence            5778999       9999866665 332       36666644212221     1210    11    234567889955


Q ss_pred             ccEEEEEccCCeEEEEEcc-------CCeeeccccccccccccccCcccce-eccccceEEEEEccCCCeEEEEe-c-Cc
Q 012721          280 CNLLAYSSSRGFVRLVDMR-------QSALCDHSARILRDAAESHGSKSFF-TEIIASISDIKFANDGQHLLSRD-Y-MN  349 (457)
Q Consensus       280 ~~~l~~~~~dg~i~lwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~-~-~~  349 (457)
                      ..++++-..++.|..+|+.       ++...... .....   . .....+ .+....-..++|+|+|++|..++ . ..
T Consensus       259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~-~~~~~---g-~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~  333 (496)
T 3kya_A          259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI-VKNNP---N-TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY  333 (496)
T ss_dssp             CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB-GGGCT---T-TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             CeEEEEECCCCEEEEEecccccccccCceeeccc-ccccc---c-ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE
Confidence            3777777788999999997       44320000 00000   0 000000 01123457899999999766554 3 88


Q ss_pred             EEEEecc
Q 012721          350 LKLWDIR  356 (457)
Q Consensus       350 i~~wd~~  356 (457)
                      |+.++..
T Consensus       334 I~kid~d  340 (496)
T 3kya_A          334 FMRSDYD  340 (496)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecC
Confidence            8887765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.60  E-value=0.0012  Score=65.82  Aligned_cols=178  Identities=8%  Similarity=-0.021  Sum_probs=94.5

Q ss_pred             CeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-CeEEEEE
Q 012721          220 NINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~lwd  296 (457)
                      ....+++.+.+. ++++- ..+.|.++++. ......++       .........|+++|.+..++++-... +.|..++
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~d-g~~~~~l~-------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~  525 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  525 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSS-SCCEEEEC-------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecC-CCceEEEE-------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence            345688876444 44444 77899999987 33322221       11223456788998762444433222 6777777


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      +......    .+...             .-.....|+|+|++..|+.++.  +.|..+++.  +.....+........ 
T Consensus       526 ~dG~~~~----~l~~~-------------~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~-  585 (699)
T 1n7d_A          526 LNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA-  585 (699)
T ss_dssp             SSSCCCC----EESCS-------------SCSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCS-
T ss_pred             CCCCCee----EEEeC-------------CCCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCC-
Confidence            6543210    11110             0124567999998777766543  789999886  333333321110000 


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceee-eeccC
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-ILQAA  438 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~-~~~p~  438 (457)
                              ..   ..+++..+ .++++....+.|..++..++ +...++.........+ .++|.
T Consensus       586 --------~P---~glavd~~-~lywtd~~~~~V~~~d~~~G-~~~~~i~~~~~~P~~i~v~~~~  637 (699)
T 1n7d_A          586 --------HP---FSLAVFED-KVFWTDIINEAIFSANRLTG-SDVNLLAENLLSPEDMVLFHQL  637 (699)
T ss_dssp             --------SC---CCCEEETT-EEEEECSTTTCEEEEETTTE-EEEECCCTTCSSCCCCCBCSSS
T ss_pred             --------Cc---eEeEEECC-EEEEEeCCCCeEEEEEccCC-CceEEeecCCCCCcEEEEeCcc
Confidence                    00   35666544 44445556789999998887 4444443333233334 34443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.57  E-value=0.039  Score=49.26  Aligned_cols=158  Identities=8%  Similarity=0.004  Sum_probs=88.7

Q ss_pred             CCCeeEEEeCCCCCEEEEeCCCeEEE-EEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          218 DFNINSISNNSDCETFVSADDLRINL-WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      ...+..+.+.+++.+++.+.++.+.. .|-  .+...+.+.      ......+..+.+.+++ .+++. +.+|.+.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~~~-~~~G~~~~s~  231 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLWMI-VNGGKIAFSD  231 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEEEE-ETTTEEEEEE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEEEE-eCCceEEEec
Confidence            34678899999998888884454443 332  133333321      1234568889999987 66544 4578777764


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  376 (457)
                      ...++       .+.. ...+.     ..+...+..+.+.+++.+++++.++.|. +..+ .++....+........   
T Consensus       232 ~D~G~-------tW~~-~~~~~-----~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~D-gG~tW~~~~~~~~~~~---  293 (327)
T 2xbg_A          232 PDNSE-------NWGE-LLSPL-----RRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQD-GGQTWQQDVDVKKVPS---  293 (327)
T ss_dssp             TTEEE-------EECC-CBCTT-----SSCCSCEEEEEESSSSCEEEEESTTCEE-EESS-TTSSCEECGGGTTSSS---
T ss_pred             CCCCC-------eeEe-ccCCc-----ccCCcceEEEEecCCCEEEEEeCCCeEE-EeCC-CCcccEEcCccCCCCC---
Confidence            33232       1211 00000     0011358889999988888888777663 4433 2444444332111000   


Q ss_pred             cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                               ....+.|.+++. ++.++.+|.|.-++-
T Consensus       294 ---------~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          294 ---------NFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             ---------CCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             ---------CeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence                     115788875555 556677898776653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.54  E-value=0.043  Score=48.95  Aligned_cols=184  Identities=10%  Similarity=0.007  Sum_probs=99.2

Q ss_pred             CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721          220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~  299 (457)
                      .+..+.+.+++..++++.++.|..  ....++......      ......+..+.+.|++ .+++.+...+..+-.|-. 
T Consensus       123 ~~~~i~~~~~~~~~~~~~~g~v~~--S~DgG~tW~~~~------~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~g-  192 (327)
T 2xbg_A          123 SPRLIKALGNGSAEMITNVGAIYR--TKDSGKNWQALV------QEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPG-  192 (327)
T ss_dssp             CEEEEEEEETTEEEEEETTCCEEE--ESSTTSSEEEEE------CSCCCCEEEEEECTTS-CEEEEETTSSEEEEECTT-
T ss_pred             CeEEEEEECCCCEEEEeCCccEEE--EcCCCCCCEEee------cCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCC-
Confidence            456676666676666665554432  222444444331      2344568899999988 777776554444444421 


Q ss_pred             CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccccccc
Q 012721          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  379 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  379 (457)
                      +       ..+....         ......+..+.+.+++++++.+.+|.+++.+.+. ++....+......        
T Consensus       193 G-------~tW~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~-G~tW~~~~~~~~~--------  247 (327)
T 2xbg_A          193 Q-------TAWEPHN---------RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRR--------  247 (327)
T ss_dssp             C-------SSCEEEE---------CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTE-EEEECCCBCTTSS--------
T ss_pred             C-------CceeECC---------CCCCCccceeEECCCCCEEEEeCCceEEEecCCC-CCeeEeccCCccc--------
Confidence            1       1111100         0112468889999999888777678777764221 2222222111000        


Q ss_pred             CCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe---cCCCcceeeeeccCCcceec
Q 012721          380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE---AGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       380 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~~~  444 (457)
                         .-..+..+.+.+++..++++. +|.| ++..+.| +.-..+.   .....+..+.|.+++...+.
T Consensus       248 ---~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~  309 (327)
T 2xbg_A          248 ---NSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSPDQGFIL  309 (327)
T ss_dssp             ---CCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEETTEEEEE
T ss_pred             ---CCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECCCceEEE
Confidence               000125788888877766554 6777 4555555 3333333   23456788888766554444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.49  E-value=0.016  Score=57.35  Aligned_cols=75  Identities=12%  Similarity=0.054  Sum_probs=47.9

Q ss_pred             CCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cC-----C
Q 012721          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-----G  290 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~d-----g  290 (457)
                      ....++++..++++++.|  .+..+.+||.. ...-...-     .+..... -.+++..+++ ++++.|+ .+     .
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~-t~~W~~~~-----~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~  314 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSS-SDSWIPGP-----DMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEK  314 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGG-GTEEEECC-----CCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCC
T ss_pred             CccccccCCCCCCEEEeCCCCCCceEEecCc-CCceeECC-----CCCcccc-ccceEEecCC-eEEEEeCcccCCcccc
Confidence            334457777899999887  56789999988 33222211     1111111 1344566788 8888888 34     5


Q ss_pred             eEEEEEccCCe
Q 012721          291 FVRLVDMRQSA  301 (457)
Q Consensus       291 ~i~lwd~~~~~  301 (457)
                      .+.+||..+.+
T Consensus       315 ~~e~yd~~t~~  325 (656)
T 1k3i_A          315 NGEVYSPSSKT  325 (656)
T ss_dssp             CEEEEETTTTE
T ss_pred             cceEeCCCCCc
Confidence            68999998764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.49  E-value=0.091  Score=51.46  Aligned_cols=162  Identities=7%  Similarity=-0.013  Sum_probs=95.0

Q ss_pred             CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEE-ccCCeEEEEE
Q 012721          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~-~~dg~i~lwd  296 (457)
                      ....+++.+.+..|+.+  ..+.|.+.+++ ......+       ....-.....|+++|..+.++.+- +..+.|...+
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~  152 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHRQVL-------VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA  152 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETT-STTCEEE-------ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcEEEE-------EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence            35577887665555554  77899999987 3322222       112334578999998652444443 2356788887


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      +......    .+...              ......|+++++++.|..++.  +.|..+|+..  .....+...-..   
T Consensus       153 ~dG~~~~----~l~~~--------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG--~~~~v~~~~l~~---  209 (628)
T 4a0p_A          153 MDGSERT----TLVPN--------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG--LNREVIADDLPH---  209 (628)
T ss_dssp             TTSCSCE----EEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECCSC---
T ss_pred             CCCCceE----EEECC--------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC--CceEEeeccCCC---
Confidence            7654311    11111              245789999998888877653  8899999863  222233221110   


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                               .   ..+++.. +...++-...+.|...|..+++. ..++...
T Consensus       210 ---------P---~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~  247 (628)
T 4a0p_A          210 ---------P---FGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGH  247 (628)
T ss_dssp             ---------E---EEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECS
T ss_pred             ---------c---eEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecC
Confidence                     0   3677754 34444444578899999888843 3444433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.48  E-value=0.033  Score=49.48  Aligned_cols=157  Identities=8%  Similarity=-0.038  Sum_probs=93.9

Q ss_pred             CeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          220 NINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      ....++|++.+..|+ +- ..+.|..++++.......++       .........+++.+.+..++++-...+.|.++++
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~-------~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~  108 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-------VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL  108 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE-------EECCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE-------cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence            456888988555554 44 78899999988332111111       1112345678898755366666667889999998


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---cCcEEEEeccCCCCceeEeeeccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      ......    .+...             .......++++|.+.+|+.++   .+.|...+++  +.....+.......+ 
T Consensus       109 dG~~~~----~l~~~-------------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~l~~P-  168 (318)
T 3sov_A          109 DGSLRK----VLFWQ-------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSEIYWP-  168 (318)
T ss_dssp             TSCSCE----EEECS-------------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCSCE-
T ss_pred             CCCcEE----EEEeC-------------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEECCCCCc-
Confidence            754211    11111             123467899999766666544   2677777765  443333321111110 


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCC
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  416 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~  416 (457)
                                   ..+++++++..|+.+. ..+.|..+++...
T Consensus       169 -------------nglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          169 -------------NGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             -------------EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             -------------cEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence                         4799999766666554 4678999998643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.45  E-value=0.022  Score=50.16  Aligned_cols=179  Identities=9%  Similarity=0.013  Sum_probs=101.5

Q ss_pred             CCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc-cCCCCceEEEEE---ecCCccEEEEEcc----
Q 012721          219 FNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEF---HPIYCNLLAYSSS----  288 (457)
Q Consensus       219 ~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~---~p~~~~~l~~~~~----  288 (457)
                      ..-.+++|++ ++.++++. ..+.|..||.. .+....+ ....... ......+..|.|   .|++ .++++...    
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af   89 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF   89 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence            3445789977 45555555 89999999987 3433333 1110000 011124578999   6887 88776442    


Q ss_pred             ---------CCeEEEEEcc---CCeeeccccccccccccccCcccceec-cccceEEEEEccCCCeEEEEec--CcEEEE
Q 012721          289 ---------RGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRDY--MNLKLW  353 (457)
Q Consensus       289 ---------dg~i~lwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~--~~i~~w  353 (457)
                               +..|..||+.   +++..    ..... ...........+ -......++..++|+..++++.  +.|...
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL-~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPV----WSVNF-EKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV  164 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCS----EEEES-HHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEE----EEecC-ccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence                     6789999998   55432    11110 000000000000 0124789999999998887663  555555


Q ss_pred             eccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      +..  ++.+..+........         .......++++|||..|++....|.|..+|+.+.
T Consensus       165 ~pd--G~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          165 SAD--GKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             CTT--SCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eCC--CCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            543  554443322111100         0111258999999998888777999999998844

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.44  E-value=0.056  Score=47.95  Aligned_cols=157  Identities=9%  Similarity=-0.019  Sum_probs=93.5

Q ss_pred             CeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCC---cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721          220 NINSISNNSDCETFVS-A-DDLRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l  294 (457)
                      ....++|++++..|+. - .++.|..++++..   .....+       +.........+++++.+.+++++-...+.|.+
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-------~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~  103 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  103 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-------EeCCCCCcCEEEEeecCCeEEEEECCCCEEEE
Confidence            5678999986655554 4 7899999998731   111212       11122345788898755266666677889999


Q ss_pred             EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--c-CcEEEEeccCCCCceeEeeecccc
Q 012721          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHL  371 (457)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~-~~i~~wd~~~~~~~~~~~~~~~~~  371 (457)
                      +|+......    .+...             .......++++|.+.+|+.++  . +.|...+++  +.....+......
T Consensus       104 ~~~~g~~~~----~~~~~-------------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~~~~~~~  164 (316)
T 1ijq_A          104 ADTKGVKRK----TLFRE-------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQ  164 (316)
T ss_dssp             EETTSSSEE----EEEEC-------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEECSSCS
T ss_pred             EeCCCCceE----EEEEC-------------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--CCCeEEEEECCCC
Confidence            998754211    11111             013467899999766665443  2 677777775  4444333211111


Q ss_pred             ccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCC
Q 012721          372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  416 (457)
Q Consensus       372 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~  416 (457)
                      .              ...+++++++..|+.+. ..+.|..+++...
T Consensus       165 ~--------------P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          165 W--------------PNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             C--------------EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             C--------------ceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            0              05799998877666555 4578999998743

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.39  E-value=0.066  Score=47.55  Aligned_cols=160  Identities=8%  Similarity=0.071  Sum_probs=87.2

Q ss_pred             CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE--ecCCcc-EEEEEccCCeEEEEEccC---Ceeecccccccc
Q 012721          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMRQ---SALCDHSARILR  311 (457)
Q Consensus       238 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~~~-~l~~~~~dg~i~lwd~~~---~~~~~~~~~~~~  311 (457)
                      +++|.+|++......+..+......+..-...+..+|+  +|.... ++++...+|.+..|++..   ++...+.++.+.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            68999997742222233321000001011145666777  664423 677788889999999843   322222334444


Q ss_pred             ccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCC----CceeEeeeccccccccccccCCCCccc
Q 012721          312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS----TPVATFKIHEHLRPKLCDLYNNDSIFD  386 (457)
Q Consensus       312 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                      .              .+.+..+...+....|+.+.. ..|..++.+...    +.+..+. ....            ..+
T Consensus       178 l--------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l------------~aD  230 (355)
T 3amr_A          178 M--------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHL------------TRD  230 (355)
T ss_dssp             C--------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSB------------CSC
T ss_pred             C--------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCcc------------ccC
Confidence            3              356888999988888888875 335555544211    2232221 1111            012


Q ss_pred             cceEEE--cCCCc-EEEEEe-CCCcEEEEecCCCCceeeEEe
Q 012721          387 KFECSV--SGDGL-HFATGS-YSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       387 v~~~~~--s~d~~-~l~s~~-~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      +..+++  .++++ ||++++ .++++.+||.....+.+..+.
T Consensus       231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             cceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            235665  55655 666666 577999999973224444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.35  E-value=0.043  Score=53.19  Aligned_cols=32  Identities=19%  Similarity=0.118  Sum_probs=23.2

Q ss_pred             CCCeEEEEe-cCcEEEEeccCCCCceeEeeeccc
Q 012721          338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       338 ~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                      .+..++.++ ++.|+.+|.++ ++.+..+.....
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~~  506 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNKD-GKELWNFKMPSG  506 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred             CCCEEEEEcCCCeEEEEECCC-CCEEEEEeCCCC
Confidence            345566665 49999999986 888887775543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.31  E-value=0.015  Score=51.19  Aligned_cols=76  Identities=11%  Similarity=0.094  Sum_probs=53.0

Q ss_pred             CeeEEEeCCCCCEEEEe-CC-CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          220 NINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      ....++..++|+..+++ .. +.|...+.+  ++....+.+... ........+.|+++|+| .+|++....|.|..+|+
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G~~~~~~~~~~~-~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSAD--GKTVSTFAWESG-NGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTT--SCCEEEEEECCC-CSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEEC
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCC--CCEEeeeeecCC-CcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcC
Confidence            47889999999999987 66 777777766  333333322211 11122346789999999 77777766999999998


Q ss_pred             cC
Q 012721          298 RQ  299 (457)
Q Consensus       298 ~~  299 (457)
                      ..
T Consensus       214 ~~  215 (334)
T 2p9w_A          214 SK  215 (334)
T ss_dssp             SS
T ss_pred             CC
Confidence            84

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.31  E-value=0.11  Score=48.71  Aligned_cols=180  Identities=8%  Similarity=0.016  Sum_probs=91.6

Q ss_pred             eeEEEeCCC-CCEEEEe-CCCeEEEEEcCC------Ccce-----------e-eeeecCCCcccCCCCceEEEEEecCCc
Q 012721          221 INSISNNSD-CETFVSA-DDLRINLWNLEI------SDQC-----------F-NIVDMKPSNMDDLTEVITSAEFHPIYC  280 (457)
Q Consensus       221 v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~------~~~~-----------~-~~~~~~~~~~~~~~~~i~~v~~~p~~~  280 (457)
                      ...++++|+ +.++++- .++.|..+|+..      .+..           . .++.     . +.....+.|+|+|+| 
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~-----~-~~~~~p~~ia~~p~G-  321 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT-----I-ADPSWEFQIFIHPTG-  321 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE-----C-SSSSCCEEEEECTTS-
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEe-----c-CCCCCceEEEEcCCC-
Confidence            457788995 4545555 888999999871      1211           1 1111     1 123456899999999 


Q ss_pred             cE-EEEEccCCeEEEEEccC--Ceeeccccccccc------cccccCcccceeccccceE-EEEEc-------cCCCeEE
Q 012721          281 NL-LAYSSSRGFVRLVDMRQ--SALCDHSARILRD------AAESHGSKSFFTEIIASIS-DIKFA-------NDGQHLL  343 (457)
Q Consensus       281 ~~-l~~~~~dg~i~lwd~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~h~~~v~-~~~~s-------~~g~~l~  343 (457)
                      +. +++-.....|+.++...  +...  ...++.+      +.+.+.....|    ..-. .++..       ++|.+.+
T Consensus       322 ~~lYvaD~~~h~I~kid~dg~~~~~~--~~~~~aG~~g~~G~~DG~~~~a~f----~~P~~gv~vd~~~~~~~~~g~lyV  395 (496)
T 3kya_A          322 KYAYFGVINNHYFMRSDYDEIKKEFI--TPYNFVGGYKQSGYRDDVGTEARM----NNPCQGVFVKNPDYTGEEEYDFYF  395 (496)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEC--CCEEEEEBTTBCCCBCCBGGGCBC----SSEEEEEEEECTTCCSSCCEEEEE
T ss_pred             CEEEEEeCCCCEEEEEecCCCcceec--ccEEecCCCCCCcccCCccccccc----CCCeEEEEEccccccccCCCeEEE
Confidence            74 45445678898866543  2110  0011111      00000000001    1223 44444       4455555


Q ss_pred             EEec-CcEEEEeccCCCCceeEeeeccccc--------ccccc-ccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEe
Q 012721          344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLR--------PKLCD-LYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFS  412 (457)
Q Consensus       344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~  412 (457)
                      +-.. .+|+.++..  + .+.++.+.....        ..... .-.......-..++++++ +.++++=..+.+|+.++
T Consensus       396 aD~~N~rIr~i~~~--G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~  472 (496)
T 3kya_A          396 VDRLNFCVRKVTPE--G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS  472 (496)
T ss_dssp             EEGGGTEEEEECTT--C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEEEeCC--C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence            4444 889999842  4 455554432100        00000 000001111257899987 77666666778899999


Q ss_pred             cCCC
Q 012721          413 HGVG  416 (457)
Q Consensus       413 ~~~~  416 (457)
                      +...
T Consensus       473 ~~~~  476 (496)
T 3kya_A          473 MEQE  476 (496)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            8755

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.31  E-value=0.15  Score=49.89  Aligned_cols=157  Identities=11%  Similarity=0.015  Sum_probs=90.7

Q ss_pred             CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEE
Q 012721          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd  296 (457)
                      ....+++.+.+..|+.+  ..+.|.+.+++ ......++       .........|+++|.++.++++-- ..+.|...+
T Consensus        85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l~-------~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~  156 (619)
T 3s94_A           85 SPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLF-------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  156 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEEE-------eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEE
Confidence            56788998866655554  78999999998 33222221       123345678999997524444432 246677777


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      +......    .+...             .-.....+++++++..|..++.  +.|...|++  +.....+.......  
T Consensus       157 ~dG~~~~----~l~~~-------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~--  215 (619)
T 3s94_A          157 MDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPH--  215 (619)
T ss_dssp             TTSCSCE----EEECS-------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSS--CCEEC-----------
T ss_pred             CCCCceE----EEEeC-------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC--CCccEEEEeCCCCC--
Confidence            6543211    11111             1135688999998777776653  788888875  33222221100000  


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  418 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~  418 (457)
                               .   ..+++..+ ....+-...+.|...|..+++.
T Consensus       216 ---------P---~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          216 ---------P---FALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             ---------C---CCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             ---------c---eEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence                     0   36777655 4444445678899999988843

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.23  E-value=0.02  Score=55.69  Aligned_cols=57  Identities=7%  Similarity=0.032  Sum_probs=35.3

Q ss_pred             CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721          237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  303 (457)
Q Consensus       237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~  303 (457)
                      .++.|..||+.+.+...+. ...        ..+..-.....+ .+++.++.||.++.||.++++..
T Consensus       464 ~~G~l~A~D~~tG~~~W~~-~~~--------~~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEH-KEH--------LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEE-EES--------SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CcceEEEEECCCCCEEEEe-cCC--------CCCcccceEeCC-CEEEEECCCCcEEEEECCCCCEE
Confidence            3688999999844443332 111        111111122234 67778999999999999999754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.20  E-value=0.017  Score=53.80  Aligned_cols=136  Identities=8%  Similarity=0.059  Sum_probs=82.1

Q ss_pred             CceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          268 EVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       268 ~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      .....++++| ++ ..|.++...+.|+.+|+..+...    .+...              ......++|+++|++|+.++
T Consensus       137 ~~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~----~~~~~--------------~~~P~~ia~d~~G~~lyvad  197 (430)
T 3tc9_A          137 GGAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVS----TVYSG--------------LSKVRTICWTHEADSMIITN  197 (430)
T ss_dssp             SCCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEE----EEECC--------------CSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEE----EEecC--------------CCCcceEEEeCCCCEEEEEe
Confidence            3457889998 34 44555555588999998876432    11111              24578999999999666554


Q ss_pred             c--C----cEEEEeccCCCCce--eEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCC
Q 012721          347 Y--M----NLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGS  417 (457)
Q Consensus       347 ~--~----~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~  417 (457)
                      .  +    .+.+++..  +...  ..+......                ..++++| ++.++++-..++.|+.++..++.
T Consensus       198 ~~~~~~~~~v~~~~~~--g~~~~~~~l~~~~~p----------------~giavdp~~g~lyv~d~~~~~V~~~~~~~~~  259 (430)
T 3tc9_A          198 DQNNNDRPNNYILTRE--SGFKVITELTKGQNC----------------NGAETHPINGELYFNSWNAGQVFRYDFTTQE  259 (430)
T ss_dssp             CCSCTTSEEEEEEEGG--GTSCSEEEEEECSSC----------------CCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCcccceEEEEeCC--CceeeeeeeccCCCc----------------eEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence            2  2    23334432  2222  222221111                4789999 67766666678899999998762


Q ss_pred             ceeeEEecCCCcceeeeeccCCc
Q 012721          418 AGGITVEAGKNENRKPILQAAPR  440 (457)
Q Consensus       418 ~~~~~~~~~~~~v~~~~~~p~~~  440 (457)
                      .......+.....+.++++|++.
T Consensus       260 ~~~~~~~~~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          260 TTPLFTIQDSGWEFHIQFHPSGN  282 (430)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSS
T ss_pred             EEEEEEcCCCCcceeEEEcCCCC
Confidence            21111122224467899999987

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.10  E-value=0.075  Score=47.71  Aligned_cols=167  Identities=10%  Similarity=0.069  Sum_probs=91.2

Q ss_pred             CeeEEEeCCCCCEEEEe-------------CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEec--CCcc-EE
Q 012721          220 NINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCN-LL  283 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~-~l  283 (457)
                      ..-.+...|+|..++++             .+|.|.++|.+........+.....++.........+.+.+  ++.. ++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34466677887766665             58899999987332222222211000122334677788766  3422 44


Q ss_pred             EEEcc--CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe----c----------
Q 012721          284 AYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y----------  347 (457)
Q Consensus       284 ~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~----------  347 (457)
                      ++-..  +.+|.+|++............+..    .        .-...+.+.+.++|.+.++..    +          
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g----~--------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~  198 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH----K--------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL  198 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECC----T--------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEecccc----C--------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence            44333  567888887654221111122221    0        024578999999999887753    1          


Q ss_pred             --CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCC
Q 012721          348 --MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV  415 (457)
Q Consensus       348 --~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~  415 (457)
                        ..=.+|.+.. ++......+-...                ..++|+||++.|+.+. ..+.|+.|++..
T Consensus       199 ~~~~g~vyr~d~-~~~~~~~~~l~~p----------------NGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          199 GLAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             TCCCEEEEEECT-TCCEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCccEEEEEEC-CeEEEeecCCccc----------------CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence              1123343332 2222112211111                4799999998777665 568899999864

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.10  E-value=0.16  Score=49.36  Aligned_cols=32  Identities=22%  Similarity=0.140  Sum_probs=23.6

Q ss_pred             CCCeEEEEe-cCcEEEEeccCCCCceeEeeeccc
Q 012721          338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       338 ~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                      .+.+++.++ ++.++.||.++ ++.+-+++....
T Consensus       483 agg~vf~gt~dg~l~A~D~~t-G~~lW~~~l~~g  515 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDT-GDLLWKFKIPSG  515 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred             cCCEEEEECCCCeEEEEECCC-CCEEEEeeCCCC
Confidence            355666665 59999999987 888877765543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.05  E-value=0.16  Score=45.51  Aligned_cols=135  Identities=8%  Similarity=0.117  Sum_probs=77.2

Q ss_pred             CCeEEEEEcCCCcceeeeeecCCCcccC-CCCceEEEEEecCCccEEEEEcc-----------------CCeEEEEEccC
Q 012721          238 DLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSS-----------------RGFVRLVDMRQ  299 (457)
Q Consensus       238 d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~-----------------dg~i~lwd~~~  299 (457)
                      +..|.+|+++..+.....+.    ++.+ .-.....+.+.++| .+.++...                 .|.|..+|.  
T Consensus       138 ~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--  210 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--  210 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred             CCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence            67888888874433333221    1222 23467899999999 77776541                 234444443  


Q ss_pred             CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCce--eEeeecccccccc
Q 012721          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPV--ATFKIHEHLRPKL  375 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~--~~~~~~~~~~~~~  375 (457)
                      ++..    .+...              -..-+.++|+||++.|..++ . +.|..|++...++..  ..+.....+    
T Consensus       211 ~~~~----~~~~~--------------l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~P----  268 (355)
T 3sre_A          211 NDVR----VVAEG--------------FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV----  268 (355)
T ss_dssp             TCCE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEE----
T ss_pred             CeEE----EeecC--------------CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCC----
Confidence            2110    11111              23568999999999888765 3 899999986433322  122111111    


Q ss_pred             ccccCCCCccccceEEEcC-CCcEEEEEeCC-CcEEEEec
Q 012721          376 CDLYNNDSIFDKFECSVSG-DGLHFATGSYS-NLLRIFSH  413 (457)
Q Consensus       376 ~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~d-g~i~iw~~  413 (457)
                                  -.+++.+ +|++.+++..+ +.|..|+-
T Consensus       269 ------------DGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          269 ------------DNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             ------------EEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             ------------ceEEEeCCCCcEEEEecCCceEEEEECC
Confidence                        3688888 59887766544 34444443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.00  E-value=0.21  Score=45.95  Aligned_cols=122  Identities=9%  Similarity=0.016  Sum_probs=68.4

Q ss_pred             CeeEEEeCCCCCEEEEe--C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          220 NINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      ....++++|.+..|+.+  . .+.|...+++ ......+       ....-.....|++++++..+.++-...+.|..+|
T Consensus       203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~-------~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d  274 (400)
T 3p5b_L          203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  274 (400)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEE-------EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEe
Confidence            46788999866665554  2 4788888887 3322222       1223356789999987734445545678899999


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEee
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  366 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~  366 (457)
                      +......    .+...           .+.......+++.. +.++++... +.|..+|..+ ++.+..+.
T Consensus       275 ~dG~~~~----~~~~~-----------~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~-G~~~~~i~  328 (400)
T 3p5b_L          275 VNGGNRK----TILED-----------EKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT-GSDVNLLA  328 (400)
T ss_dssp             TTSCCCE----EEEEC-----------SSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSS-CCCCEEEE
T ss_pred             CCCCccE----EEEeC-----------CCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCC-CCceEEEe
Confidence            8754211    11111           00012344666632 333334334 8888888644 55444443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.99  E-value=0.36  Score=48.52  Aligned_cols=73  Identities=8%  Similarity=0.036  Sum_probs=47.7

Q ss_pred             CeeEEEeCCCCCEEEEe--CC-CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          220 NINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      ....|+++|.+..|+.+  .+ +.|...+++ ......+       +.........|++++.+..++++=...+.|..+|
T Consensus       515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~l-------v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d  586 (791)
T 3m0c_C          515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  586 (791)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEE-------EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence            46789999875555554  33 788888887 3333222       1223356889999987634555545667899999


Q ss_pred             ccCC
Q 012721          297 MRQS  300 (457)
Q Consensus       297 ~~~~  300 (457)
                      +...
T Consensus       587 ~dG~  590 (791)
T 3m0c_C          587 VNGG  590 (791)
T ss_dssp             TTSC
T ss_pred             cCCC
Confidence            8654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.96  E-value=0.0074  Score=60.12  Aligned_cols=72  Identities=8%  Similarity=-0.023  Sum_probs=45.0

Q ss_pred             eeEEEeCCCCCEEEEe--CC-CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          221 INSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      ...++++|.+.+|+.+  .. +.|..+++. .. ...++      ..........|+|+|++..++++-...+.|..+|+
T Consensus       498 P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~-~~~~l------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~  569 (699)
T 1n7d_A          498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GV-DIYSL------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  569 (699)
T ss_dssp             CCCEECCSSSSCCEECCCSSSCCEEBCCSS-SC-CCCEE------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred             cceEEEccCCCcEEEcccCCCCeEEEEeCC-CC-CeeEE------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence            4577888865555544  33 678888776 22 22211      11122446789999986466666667789999998


Q ss_pred             cCC
Q 012721          298 RQS  300 (457)
Q Consensus       298 ~~~  300 (457)
                      ...
T Consensus       570 dG~  572 (699)
T 1n7d_A          570 NGG  572 (699)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.92  E-value=0.22  Score=44.91  Aligned_cols=27  Identities=30%  Similarity=0.509  Sum_probs=21.3

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEE
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~   60 (457)
                      .....|+|.|+|+++++ ..+|.|++++
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d   55 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS   55 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe
Confidence            46789999999986655 5668888886

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.88  E-value=0.18  Score=45.83  Aligned_cols=126  Identities=12%  Similarity=0.145  Sum_probs=79.4

Q ss_pred             CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcc-----------eeeeeecCCCcccCCCCceEEEEEecCCc--cEEEEE
Q 012721          220 NINSISNNSDCETFVSADDLRINLWNLEISDQ-----------CFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYS  286 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~v~~~p~~~--~~l~~~  286 (457)
                      .|..+..+|+|.+||...+..|.|-.+.....           ..+.+.+.+.+ ......|..+.|||-+.  ..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence            56779999999999998888999988872110           11233333211 11357899999999763  388888


Q ss_pred             ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE--ec-CcEEEE
Q 012721          287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DY-MNLKLW  353 (457)
Q Consensus       287 ~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~--~~-~~i~~w  353 (457)
                      ..|+.|++||+......  +. .++. .   .....+......|.+++|.+++-.|...  +. |.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~--P~-~L~k-~---~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEK--PI-VLNK-P---NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSC--CE-EESC-C---CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCC--Cc-chhc-c---ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999999873211  11 1111 0   0000112233678999999988766653  34 777643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.73  E-value=0.31  Score=43.86  Aligned_cols=28  Identities=32%  Similarity=0.585  Sum_probs=22.1

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFE   60 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~   60 (457)
                      -.....++|.|+|+++++ ..+|.|.+++
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~   57 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR   57 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence            345789999999996655 5668898888

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.63  E-value=0.28  Score=44.72  Aligned_cols=165  Identities=11%  Similarity=0.064  Sum_probs=96.6

Q ss_pred             eCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc
Q 012721          226 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH  305 (457)
Q Consensus       226 ~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~  305 (457)
                      .+.++..++.+.++.||.-++. .+...+.+..+.   .-.-..|..+..+|+| .+||..+ +..|.|-.+..+.....
T Consensus        28 ~~~n~t~i~~a~~n~iR~~~i~-~~~~Yk~L~~~~---~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           28 SSQNGTRIVFIQDNIIRWYNVL-TDSLYHSLNFSR---HLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEETT-TCSSCEEEECTT---TCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred             EEcCCCEEEEEECCEEEEEECC-CCCcceEEecCc---ccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCc
Confidence            3457888888878999998887 333455543220   0012256789999999 8888875 45789988874321111


Q ss_pred             c------c--ccccccccccCcccceeccccceEEEEEccCC---CeEEEE-ecCcEEEEeccCC-CCceeEeeeccccc
Q 012721          306 S------A--RILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSR-DYMNLKLWDIRMD-STPVATFKIHEHLR  372 (457)
Q Consensus       306 ~------~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g---~~l~s~-~~~~i~~wd~~~~-~~~~~~~~~~~~~~  372 (457)
                      .      .  +.+..   ++    .......+|..+.|+|-+   ..|++- +|+.|++||+... .++. .+.....  
T Consensus       102 ~~~~~~~~q~~ty~l---~~----~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~--  171 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSI---DE----EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN--  171 (452)
T ss_dssp             CHHHHHTTEEEEEEG---GG----CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS--
T ss_pred             ccccccccceeEEEc---CC----cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc--
Confidence            0      0  11111   00    001124689999999954   456654 5699999999742 2333 3331111  


Q ss_pred             cccccccCCCCccccceEEEcCCCcEEEEEe--CCCcEEE
Q 012721          373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRI  410 (457)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~i  410 (457)
                          .+-..+.+.++.+++|.+++-.|...+  ..|-|+-
T Consensus       172 ----~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          172 ----SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ----EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             ----ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence                011112334567999999877666644  6676654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.57  E-value=0.34  Score=42.45  Aligned_cols=134  Identities=7%  Similarity=-0.062  Sum_probs=69.4

Q ss_pred             EeCCCCCEEEEeC---C--CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc-CCeEEEEEcc
Q 012721          225 SNNSDCETFVSAD---D--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR  298 (457)
Q Consensus       225 ~~~~~~~~l~~~~---d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~lwd~~  298 (457)
                      .++++++.|+-..   +  ..|+..+++ .....++        ..+..    .++++++ +.|...+. ...|..-++.
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~l--------t~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~  175 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKI--------KNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTA  175 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEE--------ESSCC----CCSEEET-TEEEEECTTTCCEEEEETT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEE--------eCCCc----eEeeEEC-CEEEEEeCCCceEEEEECC
Confidence            5666787777652   3  445555555 2222222        22222    3467888 55554443 6778887876


Q ss_pred             CCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec---CcEEEEeccCCCCceeEeeecccccccc
Q 012721          299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPKL  375 (457)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~  375 (457)
                      .+...    +++..                ... ..+.|++.+|+-.+.   ..|..-++.  +.....+...  .    
T Consensus       176 g~~~~----~l~~~----------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~--~----  226 (302)
T 3s25_A          176 SQSEA----LFYDC----------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEA--N----  226 (302)
T ss_dssp             TTEEE----EEECS----------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCS--C----
T ss_pred             CCCEE----EEeCC----------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCC--C----
Confidence            65321    22222                122 235699999885432   344444443  4444444311  1    


Q ss_pred             ccccCCCCccccceEEEcCCCcEEEEEeC--CCcEEEEecC
Q 012721          376 CDLYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHG  414 (457)
Q Consensus       376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~--dg~i~iw~~~  414 (457)
                                   ...|+|++.+|+-++.  .+.|..-++.
T Consensus       227 -------------~~~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          227 -------------IEHYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             -------------EEEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             -------------cceEEECCCEEEEEECCCCcEEEEEECC
Confidence                         2347778887776533  3445555554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.52  E-value=0.47  Score=43.32  Aligned_cols=166  Identities=5%  Similarity=0.019  Sum_probs=95.0

Q ss_pred             CCeeEEEeCCCCCEEEE-e---C----CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEec--CCccEEEEEcc
Q 012721          219 FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSS  288 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~l~~~~~  288 (457)
                      ..|.....+++.++++. |   .    .|.+.+|.++ .+. .+.       +++|......+....  ..+.+++.+..
T Consensus       151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~-sQ~-------ieGhaa~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKV-SQP-------IEGHAASFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCC-EEE-------ECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred             ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccc-cch-------heeeeeeeEEEecCCCCCCceEEEEEEe
Confidence            45667777888888764 2   2    3678899988 333 222       578876655544321  11135555544


Q ss_pred             C---CeEEEEEccCCe-eecc-ccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCce
Q 012721          289 R---GFVRLVDMRQSA-LCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV  362 (457)
Q Consensus       289 d---g~i~lwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~  362 (457)
                      .   +.+++-++.... .... ..+..+. ...+      ..-.+--.++..++.-..+..-+. |.|++||+++ +.++
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv-~fpp------e~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i  293 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI  293 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEEC-CCCT------TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeee-eCCc------ccccCceeEEEecccCCEEEEEecCceEEEEeccc-ceee
Confidence            3   789999885430 0000 0011111 0011      111233457888887777776655 9999999997 7888


Q ss_pred             eEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                      ..-+.....+               +..+-..+..=++.....|.|.--.++..
T Consensus       294 ~~nrIs~~~i---------------F~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          294 YMNRISGETI---------------FVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEECCSSCE---------------EEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             eeecccCCce---------------EEecccCCCCcEEEEccCceEEEEEEccc
Confidence            7766555443               23334444444555667787776666654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.41  E-value=0.47  Score=42.14  Aligned_cols=130  Identities=11%  Similarity=0.150  Sum_probs=75.9

Q ss_pred             CeeEEEe--CCC-CC-EEEEe-CCCeEEEEEcCCC------cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc
Q 012721          220 NINSISN--NSD-CE-TFVSA-DDLRINLWNLEIS------DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  288 (457)
Q Consensus       220 ~v~~~~~--~~~-~~-~l~~~-~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~  288 (457)
                      .+..+++  +|. +. +++.. .++.+..|++...      .+.++.+.+        ...+-.+...+.. ..|+.+-+
T Consensus       129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--------gsq~EgcvvDd~~-g~Lyv~eE  199 (355)
T 3amr_A          129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--------NSQTEGMAADDEY-GRLYIAEE  199 (355)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--------SSCEEEEEEETTT-TEEEEEET
T ss_pred             CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--------CCCcceEEEcCCC-CeEEEecc
Confidence            4556666  664 44 45555 8899999998421      233333322        2467788888877 78888888


Q ss_pred             CCeEEEEEccCCeee-ccccccccccccccCcccceeccccceEEEEE--ccCCC-eEEEEe--cCcEEEEeccCCCCce
Q 012721          289 RGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQ-HLLSRD--YMNLKLWDIRMDSTPV  362 (457)
Q Consensus       289 dg~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~~g~-~l~s~~--~~~i~~wd~~~~~~~~  362 (457)
                      +.-|..||.+-.... ...+..+..           ......+..|++  .++++ ||++++  +++..+||.....+.+
T Consensus       200 d~GIw~~da~p~~~~~~~~v~~~~~-----------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          200 DEAIWKFSAEPDGGSNGTVIDRADG-----------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV  268 (355)
T ss_dssp             TTEEEEEECSTTSCSCCEEEEEBSS-----------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred             cceEEEEeCCcCCCCCceEEEEecC-----------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence            877777775421100 000011111           011235777777  45555 676665  3899999996336677


Q ss_pred             eEeeecc
Q 012721          363 ATFKIHE  369 (457)
Q Consensus       363 ~~~~~~~  369 (457)
                      ..+....
T Consensus       269 g~f~Ig~  275 (355)
T 3amr_A          269 ADFRITD  275 (355)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            7776433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.24  E-value=0.63  Score=41.85  Aligned_cols=57  Identities=11%  Similarity=-0.041  Sum_probs=37.1

Q ss_pred             ceEEEc-------CCCcEEEEEeCCCcEEEEecCCCCcee---eEEecCCCcceeeeeccCCcceec
Q 012721          388 FECSVS-------GDGLHFATGSYSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       388 ~~~~~s-------~d~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ..++|.       .+|.++++.-..+.|...++.......   ..+.+....+..+++.||+.....
T Consensus       262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~  328 (354)
T 3a9g_A          262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIS  328 (354)
T ss_dssp             EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEE
T ss_pred             cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEE
Confidence            466773       467777776667788888887532221   122233467889999999966555

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.15  E-value=0.7  Score=41.51  Aligned_cols=56  Identities=11%  Similarity=-0.085  Sum_probs=35.2

Q ss_pred             ceEEEcCCCcEEEEEeCCCcEEEEecCCCCce-----eeEEecCCCcceeeeeccCCcceec
Q 012721          388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-----GITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       388 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      ..++| .+|.++++.-..+.|...++......     ...+-.....+..+++.||+.....
T Consensus       271 ~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~  331 (352)
T 2ism_A          271 GNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVT  331 (352)
T ss_dssp             EEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEE
T ss_pred             cceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEE
Confidence            35666 46666666656677888877654221     1112123467899999999976665

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.82  E-value=0.73  Score=43.06  Aligned_cols=117  Identities=11%  Similarity=0.097  Sum_probs=62.4

Q ss_pred             CCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc--CCCCceEEEEEecC---CccEEEEEcc----
Q 012721          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPI---YCNLLAYSSS----  288 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~p~---~~~~l~~~~~----  288 (457)
                      .....++|.|+|+++++- ..+.|++++.. .+....+..+.. .+.  ........|+|+|+   +..+.++-+.    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~~~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPE-IVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTT-CCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECC-CCcEeEEecCCc-cccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            356799999999988887 44578888765 333322222211 111  12456789999995   3144444332    


Q ss_pred             --------CCeEEEEEccCCe-eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          289 --------RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       289 --------dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                              ...|.-|+..... .......++..   .+.    -..|  ....|+|.|||.+.++..
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~---~p~----~~~H--~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG---LPS----SKDH--QSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEE---ECC----CSSC--CEEEEEECTTSCEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEc---CCC----CCCC--CCCeEeECCCCeEEEEEC
Confidence                    2345555553321 00011112221   000    0123  468899999998777643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.79  E-value=0.87  Score=39.65  Aligned_cols=146  Identities=10%  Similarity=0.113  Sum_probs=70.0

Q ss_pred             CCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-----CeEEEEEc
Q 012721          229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM  297 (457)
Q Consensus       229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-----g~i~lwd~  297 (457)
                      ++++++.| .+     ..+.+||+. ... ...+...+.....|    ..+.  -++ .+++.|+.+     ..+.+||+
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~-~~~-W~~~~~~p~~r~~~----~~~~--~~~-~iyv~GG~~~~~~~~~~~~~d~  182 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPN-IDQ-WSMLGDMQTAREGA----GLVV--ASG-VIYCLGGYDGLNILNSVEKYDP  182 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETT-TTE-EEEEEECSSCCBSC----EEEE--ETT-EEEEECCBCSSCBCCCEEEEET
T ss_pred             CCEEEEEcccCCCcccceEEEEcCC-CCe-EEECCCCCCCcccc----eEEE--ECC-EEEEECCCCCCcccceEEEEeC
Confidence            45666665 32     468888987 332 22221111111111    1222  255 778887754     45888998


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec------CcEEEEeccCCCCceeEeeecccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY------MNLKLWDIRMDSTPVATFKIHEHL  371 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~------~~i~~wd~~~~~~~~~~~~~~~~~  371 (457)
                      .+.+-..    +    ...+..       ......+.+  ++++++.|+.      ..+.+||+.+ . ....+......
T Consensus       183 ~~~~W~~----~----~~~p~~-------r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~-~-~W~~~~~~p~~  243 (301)
T 2vpj_A          183 HTGHWTN----V----TPMATK-------RSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT-D-SWTTVTSMTTP  243 (301)
T ss_dssp             TTTEEEE----E----CCCSSC-------CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-T-EEEEECCCSSC
T ss_pred             CCCcEEe----C----CCCCcc-------cccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC-C-cEEECCCCCCc
Confidence            8754221    0    001111       011122222  4666666531      5688899864 2 22222211111


Q ss_pred             ccccccccCCCCccccceEEEcCCCcEEEEEeCC-----CcEEEEecCCC
Q 012721          372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVG  416 (457)
Q Consensus       372 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g~i~iw~~~~~  416 (457)
                      ..          -   ..++. -++++++.|+.+     ..+.+||+.+.
T Consensus       244 r~----------~---~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          244 RC----------Y---VGATV-LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CB----------S---CEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             cc----------c---eeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            00          0   12222 267777777765     35788888766

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.79  E-value=1  Score=40.43  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             CceEEEEECCCCC-EEEEEeCCCeEEEEEe
Q 012721           33 DIVSAIEFDKTGD-YLAVGDRGGRVILFET   61 (457)
Q Consensus        33 ~~V~~~~~s~~~~-~latg~~dg~i~iw~~   61 (457)
                      ...+.|+|.|+|+ +++ +...|.|++++.
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~   46 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQA   46 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEET
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeC
Confidence            4568999999999 655 456788988874

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.63  E-value=0.61  Score=38.31  Aligned_cols=115  Identities=11%  Similarity=-0.041  Sum_probs=64.2

Q ss_pred             CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcc--cCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM--DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      .+..++|+|+|.+.++ .++.++-.+.. ......-+.. ...+  .+-.. ..++.|.|+| .+.++  .||.|.-++-
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~-t~~~~~W~~s-~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPP-THDNDNWMGR-AKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCC-CSTTCCHHHH-CEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEESC
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCC-CCCccccccc-ccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeCC
Confidence            6779999999987777 77777766654 2111100000 0000  01111 4678999999 76666  6698887775


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEE
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL  352 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~  352 (457)
                      .+...     ..+-. . ...   .-..--..+..|.+.|+|.+.+.. ++.++-
T Consensus       115 P~~~~-----~~Wl~-~-a~~---vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr  158 (236)
T 1tl2_A          115 PQSDT-----DNWIA-R-ATE---VGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK  158 (236)
T ss_dssp             CCSTT-----CCHHH-H-SEE---EECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred             CcCCC-----Cceec-c-ccE---eccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence            43211     11110 0 000   000001357899999999888887 777543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.30  E-value=1.5  Score=46.65  Aligned_cols=157  Identities=7%  Similarity=0.067  Sum_probs=81.6

Q ss_pred             cceEEEeccCccccccceeeccCC----CCCeeEEEeCCCCCEEEE-e-------CCCeEEEEEcCCCcceeeeeecCCC
Q 012721          194 MATKIANVGNSVHARCQKVYPHAH----DFNINSISNNSDCETFVS-A-------DDLRINLWNLEISDQCFNIVDMKPS  261 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~~-~-------~d~~i~iwd~~~~~~~~~~~~~~~~  261 (457)
                      ..|..|+++.  ...+.+.+ ..|    ...|.....+++.++++. |       -.|.+.+|.++ .+. .+.      
T Consensus       125 ~aVyHW~~~~--~s~P~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~-sQ~------  193 (1630)
T 1xi4_A          125 NAVYHWSMEG--ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKV-SQP------  193 (1630)
T ss_pred             CeEEEeccCC--CCccHHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-ccc-chh------
Confidence            3466666643  22333333 223    345667777888888764 2       24788899887 332 222      


Q ss_pred             cccCCCCceEEEEEe--cCCccEEEEEcc---CCeEEEEEccCC-eeeccc-cccccccccccCcccceeccccceEEEE
Q 012721          262 NMDDLTEVITSAEFH--PIYCNLLAYSSS---RGFVRLVDMRQS-ALCDHS-ARILRDAAESHGSKSFFTEIIASISDIK  334 (457)
Q Consensus       262 ~~~~~~~~i~~v~~~--p~~~~~l~~~~~---dg~i~lwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~  334 (457)
                       ++||.+....+...  +..+.+++.+..   .+.++|-++... ...... .+..+. ...|      ..-..--.++.
T Consensus       194 -iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~-~~~~------~~~~Dfpv~~~  265 (1630)
T 1xi4_A          194 -IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPP------EAQNDFPVAMQ  265 (1630)
T ss_pred             -hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccc-cCCc------ccccCcceEEE
Confidence             56776655444432  222134444332   368888888543 100000 001110 0001      01122334677


Q ss_pred             EccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccc
Q 012721          335 FANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       335 ~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                      .++.-..+..-+. |.|.+||+.+ +.++..-+....
T Consensus       266 vs~k~g~iy~itk~G~~~~~d~~t-~~~i~~~ris~~  301 (1630)
T 1xi4_A          266 ISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRISGE  301 (1630)
T ss_pred             eccccCEEEEEecCceEEEEeccc-chhhhhccccCC
Confidence            7776666665554 9999999987 777665554443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.29  E-value=0.15  Score=41.78  Aligned_cols=67  Identities=7%  Similarity=-0.031  Sum_probs=36.6

Q ss_pred             CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcc-cCCCCceEEEEEecCCccEEEEEccCCe
Q 012721          219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGF  291 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~p~~~~~l~~~~~dg~  291 (457)
                      ..+..|.+.|+|.+.+.. |+.++-+..-... ...-+... ..+ ........-+.|.+++ .+.++.  +|.
T Consensus       135 ~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~-~~~wl~~~-~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g~  202 (236)
T 1tl2_A          135 SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSN-QDNWLARA-TKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGK  202 (236)
T ss_dssp             GGEEEEEECTTSCEEEEE-TTEEEEECCCSST-TCCHHHHC-EEEESSSGGGEEEEEECTTS-CEEEEE--TTE
T ss_pred             CceEEEEECCCceEEEEe-CCcEEecCCCCCC-Cccccccc-ceeccCCcceEEEEEECCCC-cEEEEe--CCe
Confidence            357899999999998888 8875543222111 00000000 001 1233345557788888 666655  663

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.25  E-value=0.95  Score=40.66  Aligned_cols=78  Identities=8%  Similarity=-0.010  Sum_probs=43.9

Q ss_pred             CeeEEEeCCCCC-EEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC---CccEEEEEcc-------
Q 012721          220 NINSISNNSDCE-TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS-------  288 (457)
Q Consensus       220 ~v~~~~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~-------  288 (457)
                      .-..++|.|+|+ ++++-..+.|++++..  +.....+.-.+............|+++|+   +..+.++-+.       
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            467899999999 6655577999999854  22211111000011122345689999995   3144444332       


Q ss_pred             CCeEEEEEccC
Q 012721          289 RGFVRLVDMRQ  299 (457)
Q Consensus       289 dg~i~lwd~~~  299 (457)
                      ...|..|++..
T Consensus        97 ~~~v~r~~~~~  107 (353)
T 2g8s_A           97 GTAVGYGRLSD  107 (353)
T ss_dssp             EEEEEEEEECT
T ss_pred             eeEEEEEEECC
Confidence            23566666543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.12  E-value=2.7  Score=41.07  Aligned_cols=163  Identities=6%  Similarity=-0.049  Sum_probs=94.3

Q ss_pred             CCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      ..+..++|.+....|+.+  ..+.|+.++++ ......++... .........+..+++...+.++..+-+..+.|.+.+
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~-g~~~~~v~~~~-~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~  417 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQED-GSQGFTVVVSS-VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTR  417 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEC---------CCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcC-CCCceEEEEcc-cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEE
Confidence            457789998866666665  67889988887 33222222100 000012346789999988636667777888999999


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE-EEec-C--cEEEEeccCCCCceeEeeeccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY-M--NLKLWDIRMDSTPVATFKIHEHLR  372 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~-~--~i~~wd~~~~~~~~~~~~~~~~~~  372 (457)
                      +.... .    +++-.            .......++++.|...+|. +-.. .  .|...++  .+.....+....-.-
T Consensus       418 ~~G~~-~----~~l~~------------~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~--dG~~~~~l~~~~l~~  478 (628)
T 4a0p_A          418 LDGRS-V----GVVLK------------GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAAL--DGTEREVLFFSGLSK  478 (628)
T ss_dssp             TTSCE-E----EEEEE------------CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEET--TSCSCEEEECSSCSC
T ss_pred             CCCCe-E----EEEEe------------CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeC--CCCCcEEEEeccCCC
Confidence            86532 1    11111            0124578999999544544 4322 2  4555554  355444443211110


Q ss_pred             cccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCC
Q 012721          373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG  416 (457)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~  416 (457)
                                    ...+++.+++..|+.+.. .+.|...+++..
T Consensus       479 --------------P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~  509 (628)
T 4a0p_A          479 --------------PIALALDSRLGKLFWADSDLRRIESSDLSGA  509 (628)
T ss_dssp             --------------EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             --------------ccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence                          157899988777766654 578888888543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.98  E-value=2.3  Score=39.60  Aligned_cols=33  Identities=9%  Similarity=0.209  Sum_probs=23.7

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG   64 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~   64 (457)
                      -...+.|+|.|+|+++++-...+.|++++..++
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence            346689999999998877554456877765444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.25  E-value=2.5  Score=36.69  Aligned_cols=22  Identities=14%  Similarity=0.373  Sum_probs=16.4

Q ss_pred             CCcEEEEEeCCC-----cEEEEecCCC
Q 012721          395 DGLHFATGSYSN-----LLRIFSHGVG  416 (457)
Q Consensus       395 d~~~l~s~~~dg-----~i~iw~~~~~  416 (457)
                      ++.+++.|+.++     .+.+||+.+.
T Consensus       251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          251 NGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCEEEEECCcCCCcccccEEEEcCCCC
Confidence            677777777654     4888998876

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.72  E-value=3.1  Score=36.24  Aligned_cols=134  Identities=13%  Similarity=0.110  Sum_probs=71.0

Q ss_pred             CCCCEEEEe---CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC--------------C
Q 012721          228 SDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------------G  290 (457)
Q Consensus       228 ~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--------------g  290 (457)
                      .++..|+.+   .++.|+..+.+ .....++.        .  .  .+--+++++ ..|+.+...              .
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~--------~--~--~~~~i~~~g-~~Iyy~~~~~~~~~~~~~~~~n~~   88 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKLS--------N--D--TAMYINADK-NYVYYVRNNNQKITSQTFFSYDRN   88 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETT-SCSCEEEE--------E--E--EEEEEEECS-SEEEEEEECC------CCSSCCSE
T ss_pred             EeCCEEEEEeCCCCceEEEEcCC-CCCCEEcc--------C--C--ceeeEEEcC-CEEEEEECCCCcccccceeccCCC
Confidence            456666654   36777777766 33333321        1  1  233457888 777666543              3


Q ss_pred             eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---cCcEEEEeccCCCCceeEeee
Q 012721          291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIRMDSTPVATFKI  367 (457)
Q Consensus       291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~~~i~~wd~~~~~~~~~~~~~  367 (457)
                      .|+..++...+..     .+..               .  .+..|++++++|+-.+   ++.-.||-+...+.....+..
T Consensus        89 ~Iy~i~~dg~~~~-----~l~~---------------~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~  146 (302)
T 3s25_A           89 SLCRIKRNGHGST-----VLDP---------------D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN  146 (302)
T ss_dssp             EEEEEETTSCCCE-----EEEC---------------S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES
T ss_pred             eEEEEeCCCCcce-----Eeec---------------C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC
Confidence            5666666654311     1111               1  1236778888888554   344444444333444444443


Q ss_pred             ccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCC
Q 012721          368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG  416 (457)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~  416 (457)
                      +..                   ..++++++.|+-.+. ...|++-++..+
T Consensus       147 ~~~-------------------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          147 HYL-------------------FTCNTSDRYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             SCC-------------------CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred             CCc-------------------eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence            321                   234567777765544 567777777655

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.50  E-value=3.5  Score=35.82  Aligned_cols=22  Identities=0%  Similarity=0.196  Sum_probs=16.7

Q ss_pred             CCcEEEEEeCC-----CcEEEEecCCC
Q 012721          395 DGLHFATGSYS-----NLLRIFSHGVG  416 (457)
Q Consensus       395 d~~~l~s~~~d-----g~i~iw~~~~~  416 (457)
                      ++.+++.|+.+     ..+.+||+.+.
T Consensus       247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          247 GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            67788888754     46888998876

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.10  E-value=6.9  Score=38.12  Aligned_cols=155  Identities=10%  Similarity=0.062  Sum_probs=88.1

Q ss_pred             CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEE
Q 012721          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVD  296 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd  296 (457)
                      ....+++.+.+..|+.+  ..+.|.+.+++ ... ..++      ....-.....|+++|..+.++.+-. ..+.|...+
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~-G~~-~~~l------~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~  464 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLN-GTM-RKIL------ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAA  464 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCS-CEEE------ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCC-CCe-EEEE------EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEc
Confidence            45578887655555444  78899999988 332 2222      1223356789999997425544432 236677666


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      +......    .+...             .-...+.|++++++..|..++.  +.|..+++.  +.....+......   
T Consensus       465 ~dG~~~~----~l~~~-------------~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~~l~---  522 (619)
T 3s94_A          465 LDGSDRV----VLVNT-------------SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD--GTGRRVLVEDKIP---  522 (619)
T ss_dssp             TTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEESS--SCCCEEEEECCCC---
T ss_pred             cCCCccE----EEEeC-------------CCCCCeeeEEcccCCEEEEEECCCCEEEEEecC--CCceEEEeccCCC---
Confidence            6543211    11111             1245678999998777776653  788888885  3333333211110   


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                              ..   ..++...+ .+..+-...+.|...+..++
T Consensus       523 --------~P---~glav~~~-~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          523 --------HI---FGFTLLGD-YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             --------SS---CCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred             --------Cc---EEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence                    00   35666544 33334444677888888887

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.23  E-value=5.4  Score=34.69  Aligned_cols=64  Identities=13%  Similarity=0.037  Sum_probs=33.2

Q ss_pred             CCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-----CeEEEEEc
Q 012721          229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM  297 (457)
Q Consensus       229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-----g~i~lwd~  297 (457)
                      ++++++.| .+     ..+.+||.. .. ....+..    +.........+.+  ++ .+++.|+.+     ..+.+||+
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~-~~-~W~~~~~----~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~  191 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPE-RD-EWHLVAP----MLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYP  191 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETT-TT-EEEECCC----CSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred             CCEEEEEcCCCCCcccccEEEECCC-CC-eEeECCC----CCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeC
Confidence            45666665 32     468888887 33 2222211    1111111122222  55 777887754     45888998


Q ss_pred             cCCe
Q 012721          298 RQSA  301 (457)
Q Consensus       298 ~~~~  301 (457)
                      .+.+
T Consensus       192 ~~~~  195 (308)
T 1zgk_A          192 ERNE  195 (308)
T ss_dssp             TTTE
T ss_pred             CCCe
Confidence            7754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.09  E-value=14  Score=39.09  Aligned_cols=73  Identities=8%  Similarity=0.022  Sum_probs=45.3

Q ss_pred             CCeeEEEeCCC------CCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEec-CCccEEEEEccC
Q 012721          219 FNINSISNNSD------CETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSR  289 (457)
Q Consensus       219 ~~v~~~~~~~~------~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~d  289 (457)
                      ..|.|+++.|.      +.+++.| . |++++|+++. .-+.+....     +.. .....++.+.. .+..+|..|-.|
T Consensus       554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~-~l~~~~~~~-----L~~-~~~p~si~l~~~~~~~~L~igl~d  626 (1158)
T 3ei3_A          554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP-SFELLHKEM-----LGG-EIIPRSILMTTFESSHYLLCALGD  626 (1158)
T ss_dssp             SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT-TCCEEEEEE-----CCS-SCCEEEEEEEEETTEEEEEEEETT
T ss_pred             CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC-CCCeEEEEE-----CCC-CCCCcEEEEEEeCCCcEEEEEeCC
Confidence            36888888653      4688888 6 9999999998 433333221     111 12344444432 222678889999


Q ss_pred             CeEEEEEcc
Q 012721          290 GFVRLVDMR  298 (457)
Q Consensus       290 g~i~lwd~~  298 (457)
                      |.+.-+.+.
T Consensus       627 G~l~~~~~d  635 (1158)
T 3ei3_A          627 GALFYFGLN  635 (1158)
T ss_dssp             SEEEEEEEC
T ss_pred             CeEEEEEEc
Confidence            988666543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.44  E-value=8.1  Score=33.41  Aligned_cols=23  Identities=13%  Similarity=0.179  Sum_probs=16.2

Q ss_pred             CCccEEEEEccC-----CeEEEEEccCCe
Q 012721          278 IYCNLLAYSSSR-----GFVRLVDMRQSA  301 (457)
Q Consensus       278 ~~~~~l~~~~~d-----g~i~lwd~~~~~  301 (457)
                      ++ .+++.|+.+     ..+.+||+.+.+
T Consensus       200 ~~-~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          200 KD-KIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             TT-EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CC-EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            55 777877753     458889988754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.06  E-value=9.9  Score=33.80  Aligned_cols=55  Identities=9%  Similarity=-0.019  Sum_probs=34.5

Q ss_pred             eEEEcCCCcEEEEEeCCCcEEEEecCCCC---ceeeEEecCCCcceeeeeccCCcceec
Q 012721          389 ECSVSGDGLHFATGSYSNLLRIFSHGVGS---AGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       389 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      .++|. ++..++..-..+.|....+..++   +....+.+....+..|...|||.....
T Consensus       267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~  324 (347)
T 3das_A          267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLV  324 (347)
T ss_dssp             EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEE
T ss_pred             ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEE
Confidence            56665 45555555555677767776542   123344555678999999999866544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=89.94  E-value=18  Score=38.86  Aligned_cols=175  Identities=11%  Similarity=0.026  Sum_probs=90.4

Q ss_pred             CCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-------cCCeEEEEEccCCee
Q 012721          230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-------SRGFVRLVDMRQSAL  302 (457)
Q Consensus       230 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-------~dg~i~lwd~~~~~~  302 (457)
                      .+.|+.-.+..|+-|++.....+.++++.. ..+.  ...|..-..+++. ++++..+       ..|.+.+|....+..
T Consensus       116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~s  191 (1630)
T 1xi4_A          116 LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS  191 (1630)
T ss_pred             CCeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeecccccc
Confidence            345555567899999997434444443221 1122  3556666777887 5544332       347788888766421


Q ss_pred             eccccccccccccccCcccceeccccceEEEEEc--cC-CCeEEEEe----cCcEEEEeccCC--CCceeEeeecccccc
Q 012721          303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFA--ND-GQHLLSRD----YMNLKLWDIRMD--STPVATFKIHEHLRP  373 (457)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--~~-g~~l~s~~----~~~i~~wd~~~~--~~~~~~~~~~~~~~~  373 (457)
                           +.++             ||.+....+...  +. ...++-+.    .+.+.|-++..+  +.+....+  ...+.
T Consensus       192 -----Q~ie-------------gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk--~~~~~  251 (1630)
T 1xi4_A          192 -----QPIE-------------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK--AVDVF  251 (1630)
T ss_pred             -----hhhh-------------HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc--ccccc
Confidence                 2233             333333222221  11 12222221    278888888542  11111100  00000


Q ss_pred             ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceee
Q 012721          374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP  433 (457)
Q Consensus       374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~  433 (457)
                       ..+-..+|-.   ..+..++.-..+..-+.-|.|+++|+.|+ ..+..-+-...+|...
T Consensus       252 -~~~~~~~Dfp---v~~~vs~k~g~iy~itk~G~~~~~d~~t~-~~i~~~ris~~~iF~~  306 (1630)
T 1xi4_A          252 -FPPEAQNDFP---VAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVT  306 (1630)
T ss_pred             -CCcccccCcc---eEEEeccccCEEEEEecCceEEEEecccc-hhhhhccccCCceEEe
Confidence             0000111111   46788888888888899999999999999 5555555444444333

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.63  E-value=15  Score=33.82  Aligned_cols=177  Identities=11%  Similarity=0.056  Sum_probs=99.1

Q ss_pred             CCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-------cCCeEEEEEccCCee
Q 012721          230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-------SRGFVRLVDMRQSAL  302 (457)
Q Consensus       230 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-------~dg~i~lwd~~~~~~  302 (457)
                      .+.|+.-.+..|+-|++.....+.++++.. ..+.  ...|..-..+++. ++++..+       -.|.+.+|..+.+..
T Consensus       116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~s  191 (494)
T 1bpo_A          116 LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS  191 (494)
T ss_dssp             TTEEEEECSSEEEEEESSSSCCCEEEEECC-GGGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCCE
T ss_pred             CCeEEEEcCCeeEEecccCCCCchhheecc-hhcc--cceEEEEEECCCC-CeEEEEeecccCCcccceEEEeecccccc
Confidence            345666677899999997555566665432 1232  3567777778888 5554333       236677887766421


Q ss_pred             eccccccccccccccCcccceeccccceEEEEEccCC---CeEEEEe----cCcEEEEeccCC--CCceeEeeecccccc
Q 012721          303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSRD----YMNLKLWDIRMD--STPVATFKIHEHLRP  373 (457)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g---~~l~s~~----~~~i~~wd~~~~--~~~~~~~~~~~~~~~  373 (457)
                           +.             +.+|......+.+..+.   .+++-+.    .+.+.+.++...  +.+....+.-+    
T Consensus       192 -----Q~-------------ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd----  249 (494)
T 1bpo_A          192 -----QP-------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD----  249 (494)
T ss_dssp             -----EE-------------ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE----
T ss_pred             -----ch-------------heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee----
Confidence                 22             33444444333332111   2233232    278888888542  11111000000    


Q ss_pred             ccccccCCCCccc-cceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721          374 KLCDLYNNDSIFD-KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  436 (457)
Q Consensus       374 ~~~~~~~~~~~~~-v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~  436 (457)
                         -++.++...| -.++..|+.-..++.-+.-|.|++||+.++ .++..-+-...++..-+.+
T Consensus       250 ---v~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg-t~i~~nrIs~~~iF~t~~~  309 (494)
T 1bpo_A          250 ---VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVTAPH  309 (494)
T ss_dssp             ---CCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE
T ss_pred             ---eeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc-eeeeeecccCCceEEeccc
Confidence               0111111100 047888988888999999999999999999 7777766666666544433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=87.93  E-value=14  Score=32.76  Aligned_cols=28  Identities=4%  Similarity=-0.073  Sum_probs=17.5

Q ss_pred             EcCCCcEEEEEeCCC------cEEEEecCCCCce
Q 012721          392 VSGDGLHFATGSYSN------LLRIFSHGVGSAG  419 (457)
Q Consensus       392 ~s~d~~~l~s~~~dg------~i~iw~~~~~~~~  419 (457)
                      ..-++++++.|+.++      .|.++++++++..
T Consensus       313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            334778888888653      3666788877433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.70  E-value=15  Score=32.72  Aligned_cols=34  Identities=12%  Similarity=0.147  Sum_probs=26.2

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK   65 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~   65 (457)
                      -...+.|+|.|||.++++--..|.|++++..++.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~   64 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR   64 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence            4577899999999988776558988888754443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=87.57  E-value=13  Score=32.18  Aligned_cols=24  Identities=4%  Similarity=-0.020  Sum_probs=16.6

Q ss_pred             cCCccEEEEEcc-C-----CeEEEEEccCCe
Q 012721          277 PIYCNLLAYSSS-R-----GFVRLVDMRQSA  301 (457)
Q Consensus       277 p~~~~~l~~~~~-d-----g~i~lwd~~~~~  301 (457)
                      -++ .+++.|+. +     ..+.+||..+.+
T Consensus       147 ~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          147 HMD-LVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             ETT-EEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             ECC-EEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            355 77777776 2     468889988753

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=86.43  E-value=15  Score=31.69  Aligned_cols=64  Identities=9%  Similarity=0.073  Sum_probs=34.4

Q ss_pred             CCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-----CeEEEEEc
Q 012721          229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM  297 (457)
Q Consensus       229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-----g~i~lwd~  297 (457)
                      ++++++.| .+     ..+.+||+. .. ....+..    +.........+.+  ++ .+++.|+.+     ..+.+||+
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~-~~-~W~~~~~----~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPE-RN-EWRMITA----MNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETT-TT-EEEECCC----CSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCC-CC-eEeeCCC----CCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence            55666665 33     568889987 33 2322211    1111111122222  55 788888764     56889998


Q ss_pred             cCCe
Q 012721          298 RQSA  301 (457)
Q Consensus       298 ~~~~  301 (457)
                      .+.+
T Consensus       239 ~~~~  242 (308)
T 1zgk_A          239 ETET  242 (308)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            8754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.26  E-value=23  Score=33.64  Aligned_cols=71  Identities=10%  Similarity=0.081  Sum_probs=48.8

Q ss_pred             ceEEEEEccCCCeEEEEec--CcEEEEeccC-----CCCc-------eeEeeeccccccccccccCCCCccccceEEEcC
Q 012721          329 SISDIKFANDGQHLLSRDY--MNLKLWDIRM-----DSTP-------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  394 (457)
Q Consensus       329 ~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  394 (457)
                      ....+..+|||+|++.++-  .++.++|++.     ..+.       ........++                +..+|.+
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP----------------lHt~Fd~  387 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP----------------LHTTFDG  387 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE----------------EEEEECS
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc----------------cEEEECC
Confidence            4457889999999998763  8999999863     1111       1111111111                5899999


Q ss_pred             CCcEEEEEeCCCcEEEEecCC
Q 012721          395 DGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       395 d~~~l~s~~~dg~i~iw~~~~  415 (457)
                      +|.-..|---|..|.-|++..
T Consensus       388 ~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          388 RGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             SSEEEEEETTTTEEEEEEHHH
T ss_pred             CCceEeeeeecceEEEEeccH
Confidence            995555556799999999875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=85.77  E-value=16  Score=31.32  Aligned_cols=64  Identities=9%  Similarity=0.030  Sum_probs=34.4

Q ss_pred             CCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-----CeEEEEEc
Q 012721          229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM  297 (457)
Q Consensus       229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-----g~i~lwd~  297 (457)
                      ++++++.| .+     ..+.+||+. .. ....+..    +.........+.  -++ .+++.|+.+     ..+.+||+
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~-~~-~W~~~~~----~p~~r~~~~~~~--~~~-~i~v~GG~~~~~~~~~v~~yd~  229 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPH-TG-HWTNVTP----MATKRSGAGVAL--LND-HIYVVGGFDGTAHLSSVEAYNI  229 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETT-TT-EEEEECC----CSSCCBSCEEEE--ETT-EEEEECCBCSSSBCCCEEEEET
T ss_pred             CCEEEEECCCCCCcccceEEEEeCC-CC-cEEeCCC----CCcccccceEEE--ECC-EEEEEeCCCCCcccceEEEEeC
Confidence            56666665 43     568889987 33 2322211    111111112222  245 788888764     46889999


Q ss_pred             cCCe
Q 012721          298 RQSA  301 (457)
Q Consensus       298 ~~~~  301 (457)
                      .+.+
T Consensus       230 ~~~~  233 (301)
T 2vpj_A          230 RTDS  233 (301)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            8754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.72  E-value=25  Score=32.66  Aligned_cols=59  Identities=14%  Similarity=0.053  Sum_probs=34.6

Q ss_pred             CeeEEEeCCCCC--EEEEeCCCeEEEEEcCCCcceeeeeecCCCccc----CCCCceEEEEEecC
Q 012721          220 NINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI  278 (457)
Q Consensus       220 ~v~~~~~~~~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~v~~~p~  278 (457)
                      .-..|+|.|++.  +|++-..|.|++++.........+.++......    ........|+|+|+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            456899999985  555558899999975421111111122111111    12456789999996

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=84.67  E-value=2.3  Score=40.22  Aligned_cols=78  Identities=14%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             eeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceee--eeecCC---CcccCCCCceEEEEEecCCccEEEEEccCCeEE
Q 012721          221 INSISNNSDCETFVSA--DDLRINLWNLEISDQCFN--IVDMKP---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~--~~~~~~---~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~  293 (457)
                      ...+..+|||++++++  .+.++.++|++.-...+.  +++.+.   .+.+ -.-.....+|.++| +...+-..|..|.
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqvv  402 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQVV  402 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceEE
Confidence            3468899999999886  899999999983111100  000000   0111 22446788999999 8777888999999


Q ss_pred             EEEccCC
Q 012721          294 LVDMRQS  300 (457)
Q Consensus       294 lwd~~~~  300 (457)
                      -|++...
T Consensus       403 kWni~~a  409 (638)
T 3sbq_A          403 KWNMEEA  409 (638)
T ss_dssp             EEEHHHH
T ss_pred             EEeccHH
Confidence            9999763

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=83.48  E-value=22  Score=30.88  Aligned_cols=24  Identities=4%  Similarity=-0.038  Sum_probs=16.4

Q ss_pred             cCCccEEEEEcc------CCeEEEEEccCCe
Q 012721          277 PIYCNLLAYSSS------RGFVRLVDMRQSA  301 (457)
Q Consensus       277 p~~~~~l~~~~~------dg~i~lwd~~~~~  301 (457)
                      .++ .+++.|+.      -..+.+||+.+.+
T Consensus       157 ~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          157 HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             ETT-EEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             ECC-EEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            455 77777764      2458899988754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=82.73  E-value=39  Score=33.35  Aligned_cols=155  Identities=10%  Similarity=0.030  Sum_probs=75.8

Q ss_pred             CCCEEEEe-CC------CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC--eEEEEEccC
Q 012721          229 DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQ  299 (457)
Q Consensus       229 ~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg--~i~lwd~~~  299 (457)
                      ++.+++.| .+      +.+.+||..+ . ....+..    +...... .+++...++ .+++.|+.++  .+.+||..+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t-~-~W~~~~~----~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t  522 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKT-R-EWSMIKS----LSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTE  522 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTT-T-EEEECCC----CSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCC-C-cEEECCC----CCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence            56666665 32      3578888873 2 2322211    1111111 122232366 8888887654  689999988


Q ss_pred             CeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEec--------CcEEEEeccCCCCc-----eeEe
Q 012721          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY--------MNLKLWDIRMDSTP-----VATF  365 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~--------~~i~~wd~~~~~~~-----~~~~  365 (457)
                      ..-...  ..  . ...+..       .....++.+..+ +++++.|+.        +.+.+||+.+ ...     ...+
T Consensus       523 ~~W~~~--~~--~-g~~p~~-------r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~w~~~~~W~~~  589 (695)
T 2zwa_A          523 EIFKDV--TP--K-DEFFQN-------SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA-ENATEPITVIKK  589 (695)
T ss_dssp             TEEEEC--CC--S-SGGGGS-------CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT-TCSSCCEEEEEE
T ss_pred             CceEEc--cC--C-CCCCCc-------ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC-CccccceEEEEc
Confidence            542210  00  0 000100       112233555555 556666532        4588899875 331     2222


Q ss_pred             eeccccccccccccCCCCccccceEEEcCCCcEEEEEeC--------CCcEEEEecCCC
Q 012721          366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY--------SNLLRIFSHGVG  416 (457)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~--------dg~i~iw~~~~~  416 (457)
                      .... ......           .+++...++.+++.|+.        ...|.+||+.+.
T Consensus       590 ~~~p-~~~R~~-----------~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          590 LQHP-LFQRYG-----------SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             EECG-GGCCBS-----------CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             CCCC-CCCccc-----------ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            2210 000000           23444444777777774        346899999877

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.24  E-value=36  Score=35.13  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=29.6

Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  303 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~  303 (457)
                      ..+.+++..++. .++++-+.|+++|+|++.++++.
T Consensus       236 ~~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v  270 (950)
T 4gq2_M          236 NTIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCV  270 (950)
T ss_dssp             TCEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEE
T ss_pred             ceEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeE
Confidence            356777777777 89999999999999999998765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=80.17  E-value=50  Score=32.89  Aligned_cols=114  Identities=12%  Similarity=0.054  Sum_probs=62.2

Q ss_pred             CCeeEEEeCCCCCEEEE-eCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          219 FNINSISNNSDCETFVS-ADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      ..|.++...++|.+.+. +..+-|..+|.. .++.... ...  .+. ....+.++....+| .+.+ |+..| +..||.
T Consensus       472 ~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~-~~~~~~~-~~~--~~~-~~~~~~~i~~d~~g-~lWi-gt~~G-l~~~~~  543 (758)
T 3ott_A          472 MFINQIIPDNEGNVWVLLYNNKGIDKINPR-TREVTKL-FAD--ELT-GEKSPNYLLCDEDG-LLWV-GFHGG-VMRINP  543 (758)
T ss_dssp             SCEEEEEECTTSCEEEEETTCSSEEEEETT-TTEEEEE-CTT--TSC-GGGCEEEEEECTTS-CEEE-EETTE-EEEECC
T ss_pred             ceeeeEEEcCCCCEEEEccCCCCcEEEeCC-CCceEEe-cCC--CcC-CCcccceEEECCCC-CEEE-EecCc-eEEEec
Confidence            35888888888887763 444568888887 3333322 110  011 13457888888887 5554 44444 788887


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccC
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM  357 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~  357 (457)
                      .+++..     .+.. ..       +  ....|.++... +|.+.++. ..-|..+|...
T Consensus       544 ~~~~~~-----~~~~-~g-------l--~~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~  586 (758)
T 3ott_A          544 KDESQQ-----SISF-GS-------F--SNNEILSMTCV-KNSIWVST-TNGLWIIDRKT  586 (758)
T ss_dssp             --CCCC-----BCCC-CC------------CCEEEEEEE-TTEEEEEE-SSCEEEEETTT
T ss_pred             CCCceE-----Eecc-cC-------C--CccceEEEEEC-CCCEEEEC-CCCeEEEcCCC
Confidence            664321     1110 00       0  02457777664 66555544 44477788764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	457
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 6e-09
 Identities = 37/310 (11%), Positives = 98/310 (31%), Gaps = 25/310 (8%)

Query: 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS 162
           + +  KSL+    +  V++  + +G  ++ +  +KT ++++V D  +      D      
Sbjct: 52  DVELHKSLDHTSVVCCVKF--SNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108

Query: 163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN 222
            EN   +        +P S  +   + ++ +   K    G            +     I 
Sbjct: 109 PENLNTS-------SSPSSDLYIRSVCFSPDG--KFLATGAEDRLIRIWDIENRKIVMIL 159

Query: 223 SISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282
                            ++   + + + + +++   + S    + + +T+    P     
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342
           +A  S    VR+ D     L +                   T    S+  + F  DGQ +
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVER----------LDSENESGTGHKDSVYSVVFTRDGQSV 269

Query: 343 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402
           +S             ++   +  K       ++  + + D +      + + +  +  +G
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS---VATTQNDEYILSG 326

Query: 403 SYSNLLRIFS 412
           S    +  + 
Sbjct: 327 SKDRGVLFWD 336

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 47/383 (12%), Positives = 110/383 (28%), Gaps = 62/383 (16%)

Query: 33  DIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91
            +V  ++F   G+YLA G ++  +V            +               +   PE 
Sbjct: 63  SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDD-----------SAANKDPEN 111

Query: 92  RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK 151
              +   S +              I  V +   P+G        D+ I++W + ++K+  
Sbjct: 112 LNTSSSPSSD------------LYIRSVCFS--PDGKFLATGAEDRLIRIWDIENRKIVM 157

Query: 152 IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK 211
           I +                                  +       +   + +    +C  
Sbjct: 158 ILQGHEQ------------------DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 199

Query: 212 VYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271
                      ++S          + D  + +W+ E +      +D +  +     + + 
Sbjct: 200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVY 258

Query: 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331
           S  F       +   S    V+L +++     + + +       S   +  +      + 
Sbjct: 259 SVVFTR-DGQSVVSGSLDRSVKLWNLQ-----NANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 332 DIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC 390
            +    + +++LS      +  WD +    P+   + H +    +     N S       
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQGHRN--SVISVAVANGSSL----- 364

Query: 391 SVSGDGLHFATGSYSNLLRIFSH 413
               +   FATGS     RI+ +
Sbjct: 365 --GPEYNVFATGSGDCKARIWKY 385

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 38/324 (11%), Positives = 89/324 (27%), Gaps = 49/324 (15%)

Query: 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----------------KEMD 156
              + RV +   P  S+ + ++ D TIK+W       ++                  ++ 
Sbjct: 17  RSPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH- 215
                     L   + F          H             I +       +  +V    
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 216 ------AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268
                  H   +  +  N D     S  +D  + +W +   +    + + +         
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC---- 190

Query: 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328
           +  + E      +    S ++   +      S   D + ++      +            
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDN 248

Query: 329 SISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387
            +  + F + G+ +LS  D   L++WD + +   + T   HE              +   
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLNAHE------------HFVTS- 294

Query: 388 FECSVSGDGLHFATGSYSNLLRIF 411
                     +  TGS    ++++
Sbjct: 295 --LDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 44/320 (13%), Positives = 88/320 (27%), Gaps = 54/320 (16%)

Query: 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP-----FVSSENTL 167
             KI  + W    +  + + ++ D  + +W            +         +  S N +
Sbjct: 55  LAKIYAMHWG--TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN 227
                              ++  +  +A     +         ++   + D         
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 228 SDCETFVSADD----------LRINLWNLEISDQCFNIVDMKPSN----MDDLTEVITSA 273
           +  +T                    L+     D    + D++              I + 
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232

Query: 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333
            F P   N  A  S     RL D+R                           II  I+ +
Sbjct: 233 CFFP-NGNAFATGSDDATCRLFDLRADQELMTY---------------SHDNIICGITSV 276

Query: 334 KFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392
            F+  G+ LL+  D  N  +WD    +        H+            + +       V
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDAL-KADRAGVLAGHD------------NRVSC---LGV 320

Query: 393 SGDGLHFATGSYSNLLRIFS 412
           + DG+  ATGS+ + L+I++
Sbjct: 321 TDDGMAVATGSWDSFLKIWN 340

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 42/365 (11%), Positives = 96/365 (26%), Gaps = 49/365 (13%)

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
            +G K   + H++     + + F     P+         H      + +L   E +  V 
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPFP----PDALIGPGIPRH---ARQINTLNHGEVVCAVT 58

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRD----QKVKKIKEMDHFPFVSS-----ENTLLA-- 169
                     + +     +K+W +        V ++  ++   ++ S     +   L   
Sbjct: 59  IS--NPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115

Query: 170 -EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS 228
            E + ++  +  +       E T +     A   +     C       +    +  +   
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175

Query: 229 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 288
             +     D       + + +      +D    + D                  L Y  +
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT 235

Query: 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347
             ++ +     +    H  +  +     H S             +KFA  G+  +S    
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL---------SLKFAYCGKWFVSTGKD 286

Query: 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407
             L  W        +   K                S+     C +S D  +  TGS    
Sbjct: 287 NLLNAWRTP-YGASIFQSKES-------------SSVLS---CDISVDDKYIVTGSGDKK 329

Query: 408 LRIFS 412
             ++ 
Sbjct: 330 ATVYE 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 36/327 (11%), Positives = 70/327 (21%), Gaps = 43/327 (13%)

Query: 117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176
           + V  C    G+  +  ++D T+K+W     K  +          SS+       +   +
Sbjct: 17  DHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTD 76

Query: 177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF--- 233
                +                      +H +            +  I            
Sbjct: 77  RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH 136

Query: 234 ---VSADDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSR 289
              V               D    + D +  + +  L                +   S  
Sbjct: 137 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLD 196

Query: 290 GFVRLVDMRQ-------------------------SALCDHSARILRDAAESHGSKSFFT 324
             +R+ D+                           S   D + +I               
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 256

Query: 325 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 384
               S       N    + S D   +KLWD++     +      E          +   +
Sbjct: 257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK-TGEFIRNLVTLE-------SGGSGGVV 308

Query: 385 FDKFECSVSGDGLHFATGSYSNLLRIF 411
           +       S   L  A GS +      
Sbjct: 309 WR---IRASNTKLVCAVGSRNGTEETK 332

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 33/306 (10%), Positives = 80/306 (26%), Gaps = 21/306 (6%)

Query: 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166
           L+ +    + ++  +C   +    +    D TIK+W     + K+I    H   V     
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY 63

Query: 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN 226
                +        S +     +                    +         + +    
Sbjct: 64  -----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118

Query: 227 NSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286
             D  +       R+ + +    +          S   D T  + +         L  + 
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 287 SSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345
                ++  D    S   D++ R+     +                      D + ++S 
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLW----DIECGACLRVLEGHEELVRCIRFDNKRIVSG 234

Query: 346 DYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404
            Y   +K+WD+     P    +           + ++  +F      +  D     + S+
Sbjct: 235 AYDGKIKVWDLVAALDP----RAPAGTLCLRTLVEHSGRVF-----RLQFDEFQIVSSSH 285

Query: 405 SNLLRI 410
            + + I
Sbjct: 286 DDTILI 291

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 33/345 (9%), Positives = 81/345 (23%), Gaps = 29/345 (8%)

Query: 33  DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92
           D +S I+   +   L +    G + +++           + +S   K             
Sbjct: 12  DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDNTD 69

Query: 93  YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI 152
            +    + + E   +  +            A           +DK I        +V   
Sbjct: 70  LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129

Query: 153 KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKV 212
           +                 K         + +    +    +                 + 
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE 189

Query: 213 YPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE---- 268
               +     ++          S+ D R+ +   +     +N           L      
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249

Query: 269 ---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325
               + S EF P     L  + S G +   +++       + + +++ A+ +        
Sbjct: 250 LAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQ-------TRKKIKNFAKFN-------- 293

Query: 326 IIASISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHE 369
                S +K A     L         K       +  +    I+ 
Sbjct: 294 ---EDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYI 335

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 17/305 (5%), Positives = 66/305 (21%), Gaps = 25/305 (8%)

Query: 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172
            + I  +      +G     +  +  I  W +      ++    H   ++     +   +
Sbjct: 12  NKAITALSSS--ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG----IKTTS 65

Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET 232
             +        H   +    +       V N + ++   +   A      +         
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 233 FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---- 288
                      +N        +   +     D    V   +         + + +     
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185

Query: 289 -RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347
                    +            + +  E   + S+              ++ +       
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245

Query: 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407
            ++ +W++   S      K    +                    +  +     +    + 
Sbjct: 246 NSVIVWNMNKPSDHPIIIKGAHAMSS--------------VNSVIWLNETTIVSAGQDSN 291

Query: 408 LRIFS 412
           ++ ++
Sbjct: 292 IKFWN 296

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 32/350 (9%), Positives = 84/350 (24%), Gaps = 46/350 (13%)

Query: 33  DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92
             V+ +++    + +          ++   G    P   I R             + +  
Sbjct: 52  GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN-RAARCVRWAPNEKKF 110

Query: 93  YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI--------LSTNDKTIKLWKV 144
                        + +  +     +  +   +   S+            + D   +++  
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170

Query: 145 RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN- 203
             ++V++      +        L+ E    +                    +  + V   
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFE--SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228

Query: 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM 263
               +       +    + +++  ++     +  D    L+                   
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFT-----------------Y 271

Query: 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323
           D     ++       +   L          L    +    D  A     AA   G  S  
Sbjct: 272 DSAAGKLS-------FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH 324

Query: 324 TEIIASISDIKFANDGQHLL------SRDYMNLKLWDIRMDSTPVATFKI 367
                S+S I   + G+           D   + +WD+R   + +   KI
Sbjct: 325 K---NSVSQISVLSGGKAKCSQFCTTGMD-GGMSIWDVRSLESALKDLKI 370

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	457
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.69
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.42
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.4
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.35
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.32
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.31
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.27
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.19
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.18
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.11
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.1
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.08
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.85
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.83
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.77
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.75
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.69
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.69
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.67
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.65
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.53
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.36
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.82
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.72
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.72
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.33
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.95
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.73
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.71
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.44
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.4
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.25
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.04
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.63
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.81
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.8
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.64
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.98
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.88
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.69
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.3
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.88
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.35
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.84
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	84.17
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	80.88

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-38  Score=288.27  Aligned_cols=275  Identities=14%  Similarity=0.194  Sum_probs=223.5

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      .+.|.+.|+|++|+|+|++||+|+ ||.|+|||+......                      .........+|.      
T Consensus        47 ~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~----------------------~~~~~~~~~~h~------   97 (337)
T d1gxra_          47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK----------------------SPVSQLDCLNRD------   97 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC----------------------SCSEEEECSCTT------
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc----------------------ceeEEeeecCCC------
Confidence            456999999999999999999998 789999999876532                      111223345676      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            +.|.+++|  +|++++|++++.|+.|++||+..........                                 
T Consensus        98 ------~~I~~v~~--s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------------------  136 (337)
T d1gxra_          98 ------NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAE---------------------------------  136 (337)
T ss_dssp             ------SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEE---------------------------------
T ss_pred             ------CcEEEEEE--cCCCCEEEEeecccccccccccccccccccc---------------------------------
Confidence                  88999999  7899999999999999999987654322211                                 


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                                                +..|...+.+++|+|++.+++++ .|+.|++|++. .++....       ..+|
T Consensus       137 --------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~-~~~~~~~-------~~~~  182 (337)
T d1gxra_         137 --------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQGH  182 (337)
T ss_dssp             --------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCC
T ss_pred             --------------------------ccccccccccccccccccccccccccccccccccc-ccccccc-------cccc
Confidence                                      15678899999999999999999 99999999998 4555443       5678


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ...+.+++|++++ ..+++++.|+.|++||+++++..    ..              ..|...|.+++|+|++++|++++
T Consensus       183 ~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~----~~--------------~~~~~~i~~l~~~~~~~~l~~~~  243 (337)
T d1gxra_         183 TDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQ--------------HDFTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EE--------------EECSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccc-cccccccccccccccccccceee----cc--------------cccccceEEEEEcccccccceec
Confidence            8999999999999 99999999999999999987543    22              22457899999999999999987


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                      . +.|++||++. .+. .....|...+               ++++|+|++++|++++.||.|++||+.++ +.... ..
T Consensus       244 ~d~~i~i~d~~~-~~~-~~~~~~~~~i---------------~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~-~~~~~-~~  304 (337)
T d1gxra_         244 ESSNVEVLHVNK-PDK-YQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQ-SK  304 (337)
T ss_dssp             TTSCEEEEETTS-SCE-EEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEE-EE
T ss_pred             cccccccccccc-ccc-cccccccccc---------------ceEEECCCCCEEEEEeCCCeEEEEECCCC-CEEEE-cc
Confidence            5 9999999975 333 3455566554               68999999999999999999999999998 44444 45


Q ss_pred             CCCcceeeeeccCCcceec
Q 012721          426 GKNENRKPILQAAPRARRS  444 (457)
Q Consensus       426 ~~~~v~~~~~~p~~~~~~~  444 (457)
                      |..+|.+++|+|++...++
T Consensus       305 ~~~~v~~~~~s~d~~~l~t  323 (337)
T d1gxra_         305 ESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             CSSCEEEEEECTTSCEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEE
Confidence            8899999999999987766

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-38  Score=293.55  Aligned_cols=319  Identities=15%  Similarity=0.228  Sum_probs=219.2

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc----
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF----  104 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~----  104 (457)
                      ++|++.|+||+|+|||++||+|+ |++|+||++.+++..                           ..+..+....    
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~---------------------------~~~~~~~~~~~~~~  110 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV---------------------------ARLSDDSAANKDPE  110 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE---------------------------EEECC---------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE---------------------------eeeccccccccccc
Confidence            45999999999999999999987 889999999877642                           2222221100    


Q ss_pred             --cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721          105 --DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (457)
Q Consensus       105 --~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (457)
                        .......+...|.+++|  ++++++|++|+.|+.|++|+...++....... ....+.++.+.+....++...     
T Consensus       111 ~~~~~~~~~~~~~V~~l~~--s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~-----  182 (388)
T d1erja_         111 NLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGS-----  182 (388)
T ss_dssp             --------CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE-----
T ss_pred             ccccccccCCCCCEEEEEE--CCCCCcceeccccccccccccccccccccccc-ccccccccccccccccccccc-----
Confidence              00111223378999999  78999999999999999999998876655432 234466666654333332221     


Q ss_pred             eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEe-CCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                               .++.+++||......   .... ..+. ...++.+ .+++.+|+++ .|+.|++||.. .+.....+....
T Consensus       183 ---------~~~~i~~~d~~~~~~---~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~  247 (388)
T d1erja_         183 ---------GDRTVRIWDLRTGQC---SLTL-SIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSEN  247 (388)
T ss_dssp             ---------TTSEEEEEETTTTEE---EEEE-ECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC---
T ss_pred             ---------cceeeeeeecccccc---cccc-cccc-ccccccccCCCCCeEEEEcCCCeEEEeecc-cCccceeecccc
Confidence                     255799999875432   2222 2333 4445555 5588999998 99999999998 555555444333


Q ss_pred             CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (457)
Q Consensus       261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~  340 (457)
                      ....+|...|.+++|+|++ .+|++++.||.|++||+++.....    .... ............|...|.+++|+|+++
T Consensus       248 ~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~  321 (388)
T d1erja_         248 ESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKS----DSKT-PNSGTCEVTYIGHKDFVLSVATTQNDE  321 (388)
T ss_dssp             ---CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGC
T ss_pred             ccccCCCCCEEEEEECCCC-CEEEEEECCCcEEEEeccCCcccc----cccc-ccccceeeecccccceEEEEEECCCCC
Confidence            4457899999999999999 999999999999999998865331    1111 111112234567788999999999999


Q ss_pred             eEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          341 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       341 ~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      +|++|+. |.|++||+++ ++++..+.+|...+..+.         ....+.|+|++.+|++|+.||+|+||+++
T Consensus       322 ~l~sg~~dg~i~vwd~~~-~~~~~~l~~H~~~V~~~~---------~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         322 YILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVA---------VANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEE---------ECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCC-CcEEEEEeCCCCCEEEEE---------EecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999875 9999999986 889999999988652110         00123467899999999999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.7e-37  Score=282.95  Aligned_cols=314  Identities=13%  Similarity=0.108  Sum_probs=225.9

Q ss_pred             cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      ..++|+|++|+|||++||+|+.||.|+||++.+++.                         ..+..+++|.         
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-------------------------~~~~~l~gH~---------   51 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------------VQVHELKEHN---------   51 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------------EEEEEEECCS---------
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-------------------------EEEEEecCCC---------
Confidence            357899999999999999999999999999987653                         3567789999         


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeec-CCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                         ++|.+++|  +|++++|++++.|++|++||+.++......... ....+.++.|.+....++...            
T Consensus        52 ---~~V~~l~f--sp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s------------  114 (371)
T d1k8kc_          52 ---GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS------------  114 (371)
T ss_dssp             ---SCEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE------------
T ss_pred             ---CCEEEEEE--CCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeec------------
Confidence               88999999  689999999999999999999988766655543 345688888876543333222            


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeee----eecC-----
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI----VDMK-----  259 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~----~~~~-----  259 (457)
                        .++.+++|+.+..............|...|.+++|+|++++|++| .|+.|++||..........    ....     
T Consensus       115 --~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~  192 (371)
T d1k8kc_         115 --GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  192 (371)
T ss_dssp             --TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             --ccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccccccccccee
Confidence              255789999886555444444447899999999999999999999 9999999998732111000    0000     


Q ss_pred             -CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721          260 -PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (457)
Q Consensus       260 -~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  338 (457)
                       ......|...|.+++|+|++ ++|++++.|+.|++||+++++..    ..             +..|..+|.+++|+|+
T Consensus       193 ~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~----~~-------------~~~~~~~v~s~~fs~d  254 (371)
T d1k8kc_         193 LMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAV----AT-------------LASETLPLLAVTFITE  254 (371)
T ss_dssp             EEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEE----EE-------------EECSSCCEEEEEEEET
T ss_pred             eeeeccCccCcEEEEEeeccc-ccccccccCCcceEEeeecccce----ee-------------eecccccceeeeecCC
Confidence             01246788999999999999 99999999999999999886432    12             2446678999999999


Q ss_pred             CCeEEEEecCcEEEEeccCCCCceeEeeecccc--------cc-----------------c-cccccCCCCccccceEEE
Q 012721          339 GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL--------RP-----------------K-LCDLYNNDSIFDKFECSV  392 (457)
Q Consensus       339 g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~--------~~-----------------~-~~~~~~~~~~~~v~~~~~  392 (457)
                      +++|++|.|+.+++|........+ .+......        ..                 . ............|+++++
T Consensus       255 ~~~la~g~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~  333 (371)
T d1k8kc_         255 SSLVAAGHDCFPVLFTYDSAAGKL-SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV  333 (371)
T ss_dssp             TEEEEEETTSSCEEEEEETTTTEE-EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEE
T ss_pred             CCEEEEEcCCceEEEEeeCCCceE-EEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEE
Confidence            999999988877777664311111 11110000        00                 0 000000001123467888


Q ss_pred             cCCC----cEEEEEeCCCcEEEEecCCC
Q 012721          393 SGDG----LHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       393 s~d~----~~l~s~~~dg~i~iw~~~~~  416 (457)
                      .+.+    ..|+|++.||.|+|||+++.
T Consensus       334 ~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         334 LSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             EESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             eCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence            7643    46899999999999999764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-36  Score=273.55  Aligned_cols=294  Identities=11%  Similarity=0.125  Sum_probs=226.3

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..+.+.+.+++++|+|+.||.+. ++.|.+|++++...                           ...+.+|.       
T Consensus        14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~---------------------------~~~~~~H~-------   58 (311)
T d1nr0a1          14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD---------------------------TEIYTEHS-------   58 (311)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC---------------------------CEEECCCS-------
T ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce---------------------------eEEEcCCC-------
Confidence            33556778899999999999986 56799999987653                           35678898       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeec-CCCceeeeeeccccccccccCCCCCceeccC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                           +.|++++|  +|+|++|++|+.||+|++||+.++.......+. ....|.+++|++....++....         
T Consensus        59 -----~~v~~~~~--sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~---------  122 (311)
T d1nr0a1          59 -----HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE---------  122 (311)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEEC---------
T ss_pred             -----CCEEEEEE--eCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccc---------
Confidence                 88999999  789999999999999999999987654433332 3456888888765443332211         


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCE-EEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                         .....+++|+++..   +....+ .+|...|++++|+|++++ |++| .|+.|++||++ ..+....       +..
T Consensus       123 ---~~~~~~~v~~~~~~---~~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~-~~~~~~~-------~~~  187 (311)
T d1nr0a1         123 ---GRERFGHVFLFDTG---TSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKST-------FGE  187 (311)
T ss_dssp             ---CSSCSEEEEETTTC---CBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEE-------ECC
T ss_pred             ---cccccccccccccc---cccccc-cccccccccccccccceeeeccccccccccccccc-ccccccc-------ccc
Confidence               12335789988754   333444 789999999999999885 7778 99999999999 5555544       577


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      |...|+++.|+|++ ++|++++.|+.|++||++++...    ..+..      ......+|...|++++|+|++++|++|
T Consensus       188 ~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~----~~~~~------~~~~~~~h~~~V~~~~~s~~~~~l~tg  256 (311)
T d1nr0a1         188 HTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFED------DSLKNVAHSGSVFGLTWSPDGTKIASA  256 (311)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBC------TTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccCccc-ccccccccccccccccccccccc----ccccc------cccccccccccccccccCCCCCEEEEE
Confidence            89999999999999 99999999999999999887543    22221      112245788999999999999999998


Q ss_pred             e-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       346 ~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      + |+.|++||+++ ++++..+..+.....              ..+.+.+++.+|++++.||.|++||++
T Consensus       257 s~Dg~v~iwd~~t-~~~~~~l~~~~~~~~--------------~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         257 SADKTIKIWNVAT-LKVEKTIPVGTRIED--------------QQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ETTSEEEEEETTT-TEEEEEEECCSSGGG--------------CEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             eCCCeEEEEECCC-CcEEEEEECCCCccc--------------eEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            7 49999999986 788888877654321              234455566789999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-36  Score=276.32  Aligned_cols=284  Identities=18%  Similarity=0.300  Sum_probs=215.2

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      +|.++|++|+|+|++++||+|+.||+|+|||+.+++                           .+..+.+|.        
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~---------------------------~~~~~~~~~--------   97 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN---------------------------KVHAIPLRS--------   97 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE---------------------------EEEEEECSC--------
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeecccce---------------------------eEEEEeccc--------
Confidence            599999999999999999999999999999998765                           456788888        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeE--EEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                          ..|.+++|  +|++.++++++.|+.+++|+........  ........................            
T Consensus        98 ----~~v~~v~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  159 (340)
T d1tbga_          98 ----SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT------------  159 (340)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEE------------
T ss_pred             ----ccEEeeEe--eccceeeeeecccceeecccccccccccccceeccccccccccccccccccccc------------
Confidence                88999999  7899999999999999999976643221  111111111111111100000000            


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                        ...+.....+......   ... ....+...+....+.+.+.+++++ .|+.|++||++ .++....       +.+|
T Consensus       160 --~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~-~~~~~~~-------~~~h  225 (340)
T d1tbga_         160 --SSGDTTCALWDIETGQ---QTT-TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQT-------FTGH  225 (340)
T ss_dssp             --EETTTEEEEEETTTTE---EEE-EEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TTEEEEE-------ECCC
T ss_pred             --cccccccccccccccc---ccc-cccccceeEeeeccccccceeEEeecCceEEEEECC-CCcEEEE-------EeCC
Confidence              0111233333333211   111 114567788999999999999999 99999999998 5655554       5789


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ...|++++|+|++ .+|++|+.||.|++||++.....    ..+..           ..|...|.+++|+|++++|++|+
T Consensus       226 ~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~~----~~~~~-----------~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
T d1tbga_         226 ESDINAICFFPNG-NAFATGSDDATCRLFDLRADQEL----MTYSH-----------DNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECSSSCEEEEEE
T ss_pred             CCCeEEEEECCCC-CEEEEEeCCCeEEEEeecccccc----ccccc-----------ccccCceEEEEECCCCCEEEEEE
Confidence            9999999999999 99999999999999999987543    22211           23456799999999999999987


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      . |.|++||+.. ++++..+.+|...+               ++++|+||+.+|++|+.||.|+|||
T Consensus       290 ~dg~i~iwd~~~-~~~~~~~~~H~~~V---------------~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         290 DDFNCNVWDALK-ADRAGVLAGHDNRV---------------SCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEeCCCCEEEEEccCCEEEEeC
Confidence            5 9999999986 88999999998765               6999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-36  Score=272.39  Aligned_cols=271  Identities=18%  Similarity=0.258  Sum_probs=230.5

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .+|.++|++|+|+|++++||||+.||+|+|||+.+++                           .+.++.+|.       
T Consensus        14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~---------------------------~~~~~~~h~-------   59 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---------------------------FERTLKGHT-------   59 (317)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---------------------------CCEEECCCS-------
T ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEEeCCC-------
Confidence            4599999999999999999999999999999998776                           346788898       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.+++|  ++++.+++++..++.+.+|+.........                                    
T Consensus        60 -----~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------   96 (317)
T d1vyhc1          60 -----DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRT------------------------------------   96 (317)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEEC------------------------------------
T ss_pred             -----CcEEEEee--ecccccccccccccccccccccccccccc------------------------------------
Confidence                 88999999  78999999999999999999876543321                                    


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                               ..+|...+.++.++|+++.++++ .|+.+++||++ .+.....       +.+|.
T Consensus        97 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~-------~~~~~  143 (317)
T d1vyhc1          97 -------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKT-------FTGHR  143 (317)
T ss_dssp             -------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEE-------EECCS
T ss_pred             -------------------------cccccccceeeeccCCCceEEeeccCcceeEeecc-cceeeeE-------EccCC
Confidence                                     15788899999999999999999 99999999998 5555544       57788


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC---------
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---------  338 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---------  338 (457)
                      ..+.+++|+|++ .+|++++.|+.|++|++.+++..    ..+             .+|...+.++.|+|+         
T Consensus       144 ~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~----~~~-------------~~~~~~i~~~~~~~~~~~~~~~~~  205 (317)
T d1vyhc1         144 EWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECK----AEL-------------REHRHVVECISWAPESSYSSISEA  205 (317)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEE-------------CCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             CcceeeecccCC-CEEEEEeCCCeEEEEeeccceee----EEE-------------ecCCCCceEEEEeeccccceeecc
Confidence            999999999999 99999999999999999887543    112             234455666666654         


Q ss_pred             -----------CCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          339 -----------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       339 -----------g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                                 +.++++++ |+.|++||++. ++++..+.+|...+               .+++|+|++++|++|+.||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~s~~~dg  269 (317)
T d1vyhc1         206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDK  269 (317)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTT
T ss_pred             ccceeeeeccCCceeEeccCCCEEEEEECCC-CcEEEEEeCCCCCE---------------EEEEECCCCCEEEEEECCC
Confidence                       45677776 49999999986 88889999888765               6899999999999999999


Q ss_pred             cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       407 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      .|++||+.++ +...++.+|.++|++++|+|+++..++
T Consensus       270 ~i~iwd~~~~-~~~~~~~~h~~~V~~~~~s~~~~~l~s  306 (317)
T d1vyhc1         270 TLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVT  306 (317)
T ss_dssp             EEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEE
T ss_pred             eEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            9999999998 678899999999999999999988776

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-35  Score=264.67  Aligned_cols=284  Identities=11%  Similarity=0.115  Sum_probs=201.8

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee-ccCCcccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~  107 (457)
                      .+|.++|++++|+|++++||+|+.||+|++||+.+++.                           +..+ .+|.      
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~h~------   55 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---------------------------NRVFPDVHA------   55 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------------EECSSCSCS------
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---------------------------EEEEcCCCC------
Confidence            45999999999999999999999999999999987763                           2333 4576      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeE--EEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                            ..|++++|  ++++. +++++.|+.+++|+........  .........+.++++.+. +.++..         
T Consensus        56 ------~~v~~v~~--~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~~~---------  116 (299)
T d1nr0a2          56 ------TMITGIKT--TSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD-GDIAVA---------  116 (299)
T ss_dssp             ------SCEEEEEE--CTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTT-SSCEEE---------
T ss_pred             ------CcEEEEEe--eccce-eecccceeeEEEeccCCccccccccccccccccccccccccc-cccccc---------
Confidence                  88999999  67775 5677889999999976543211  111112223334444321 111111         


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  264 (457)
                           ...+.+++|+....     ..   ......+.+++|+|++++|++| .|+.|++||++ .+......      ..
T Consensus       117 -----~~~~~i~~~~~~~~-----~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~-~~~~~~~~------~~  176 (299)
T d1nr0a2         117 -----ACYKHIAIYSHGKL-----TE---VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS-GASVSEVK------TI  176 (299)
T ss_dssp             -----EESSEEEEEETTEE-----EE---EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEE-TTEEEEEE------EE
T ss_pred             -----cccccccccccccc-----cc---cccccccccccccccccccccccccccccccccc-cccccccc------cc
Confidence                 12346788875421     11   1234467899999999999999 99999999998 44433321      34


Q ss_pred             CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      .|...|++++|+|++ .+|++++.|+.|++||+.++...    ...          ..+.+|...|++++|+|++++|++
T Consensus       177 ~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~----~~~----------~~~~~h~~~v~~l~~s~~~~~l~s  241 (299)
T d1nr0a2         177 VHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFEL----AHT----------NSWTFHTAKVACVSWSPDNVRLAT  241 (299)
T ss_dssp             ECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEE----SCC----------CCCCCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccc----ccc----------ccccccccccccccccccccceEE
Confidence            588999999999999 99999999999999999876432    111          124567889999999999999999


Q ss_pred             Eec-CcEEEEeccCCCCc-eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          345 RDY-MNLKLWDIRMDSTP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       345 ~~~-~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      |+. +.|++||++..... ......|....               ....+++++.+|++++.|++|++||+.
T Consensus       242 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSS---------------VNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EETTSCEEEEETTCTTSCCEEETTSSTTSC---------------EEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EcCCCEEEEEECCCCCcceEEEecCCCCCc---------------EEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            875 99999999763222 22222222211               234455677899999999999999984

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=264.50  Aligned_cols=240  Identities=18%  Similarity=0.273  Sum_probs=202.4

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|.+++|+|++++||+|+.||.|++||+.....                         +....+.+|.       
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~-------------------------~~~~~~~~~~-------  141 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-------------------------RIKAELTSSA-------  141 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------------EEEEEEECSS-------
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc-------------------------cccccccccc-------
Confidence            45889999999999999999999999999999875542                         2456677887       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.++.|  ++++.++++++.|+.|++|++.+++.....                                   
T Consensus       142 -----~~v~~~~~--~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~-----------------------------------  179 (337)
T d1gxra_         142 -----PACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQTLVRQF-----------------------------------  179 (337)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------------
T ss_pred             -----cccccccc--cccccccccccccccccccccccccccccc-----------------------------------
Confidence                 77999999  789999999999999999999887654321                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                ..|...|.+++|++++..++++ .|+.+++||++ .++.+..        ..|.
T Consensus       180 --------------------------~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~-~~~~~~~--------~~~~  224 (337)
T d1gxra_         180 --------------------------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQ--------HDFT  224 (337)
T ss_dssp             --------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEE--------EECS
T ss_pred             --------------------------cccccccccccccccccccccccccccccccccc-cceeecc--------cccc
Confidence                                      5688899999999999999999 99999999998 5555544        2467


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      ..|.+++|+|++ ++|++++.|+.|++||+++++..       .           ...|...|++++|+|++++|++++.
T Consensus       225 ~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~-------~-----------~~~~~~~i~~v~~s~~g~~l~s~s~  285 (337)
T d1gxra_         225 SQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKY-------Q-----------LHLHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEE-------E-----------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cceEEEEEcccc-cccceeccccccccccccccccc-------c-----------ccccccccceEEECCCCCEEEEEeC
Confidence            889999999999 99999999999999999886432       1           1346788999999999999999875


Q ss_pred             -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                       +.|++||+.. ++.+..+. |...+               ++++|+|++++|++|+.||+|+|||+
T Consensus       286 Dg~i~iwd~~~-~~~~~~~~-~~~~v---------------~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         286 DNLLNAWRTPY-GASIFQSK-ESSSV---------------LSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSEEEEEETTT-CCEEEEEE-CSSCE---------------EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCC-CCEEEEcc-CCCCE---------------EEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence             9999999986 67776654 44433               68999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-32  Score=249.67  Aligned_cols=307  Identities=12%  Similarity=0.218  Sum_probs=215.1

Q ss_pred             cccCCce-EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           29 LQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        29 ~~h~~~V-~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      .+|.+.| +|++|  ++++||||+.||+|+|||+.+++                           ++.++.+|.      
T Consensus         9 ~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~---------------------------~~~~l~~H~------   53 (355)
T d1nexb2           9 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHD------   53 (355)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE---------------------------EEEEEECCS------
T ss_pred             CCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEECCC------
Confidence            4598875 66666  48899999999999999998765                           567889999      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            ++|.+++|  +++ .+|++++.|++|++|+..........................++..+...          
T Consensus        54 ------~~V~~l~~--s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  114 (355)
T d1nexb2          54 ------GGVWALKY--AHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG----------  114 (355)
T ss_dssp             ------SCEEEEEE--ETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEE----------
T ss_pred             ------CCEEEEEE--cCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeee----------
Confidence                  88999999  454 58999999999999999887765544333222111111111111111100          


Q ss_pred             CccccccceEEEeccCccccccc-------------------eeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcC
Q 012721          188 LEWTENMATKIANVGNSVHARCQ-------------------KVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  247 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~-------------------~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~  247 (457)
                         ..++.+++|++.........                   ......|...+.  .+.+++++++++ .|+.|++||++
T Consensus       115 ---~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~  189 (355)
T d1nexb2         115 ---SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVA  189 (355)
T ss_dssp             ---ETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETT
T ss_pred             ---cCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeeeecc
Confidence               12457889988653221100                   001122333333  344578899999 99999999998


Q ss_pred             CCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  327 (457)
                       ..+....       ..++...+.++.++|++ .++++++.|+.|++||++++...    ..             +.+|.
T Consensus       190 -~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~----~~-------------~~~h~  243 (355)
T d1nexb2         190 -QMKCLYI-------LSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELM----YT-------------LQGHT  243 (355)
T ss_dssp             -TTEEEEE-------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEE----EE-------------ECCCS
T ss_pred             -cccceee-------eeccccccccccccccc-eeeecccccceEEeeeccccccc----cc-------------ccccc
Confidence             5555543       46677889999999999 99999999999999999987533    22             34577


Q ss_pred             cceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                      ..|.+++++  +++|++++ ||.|++||++. ..  ..+..|...+.              ....+++++.+|++|+ |+
T Consensus       244 ~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~--------------~~~~~~~~~~~l~~g~-d~  303 (355)
T d1nexb2         244 ALVGLLRLS--DKFLVSAAADGSIRGWDAND-YS--RKFSYHHTNLS--------------AITTFYVSDNILVSGS-EN  303 (355)
T ss_dssp             SCCCEEEEC--SSEEEEECTTSEEEEEETTT-CC--EEEEEECTTCC--------------CCCEEEECSSEEEEEE-TT
T ss_pred             ccccccccc--cceeeeeecccccccccccc-cc--eecccccCCce--------------EEEEEcCCCCEEEEEe-CC
Confidence            889999887  56888886 49999999974 33  34445554431              1346778888777665 89


Q ss_pred             cEEEEecCCCCceeeEEecCCCcceeeeeccCCc
Q 012721          407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  440 (457)
Q Consensus       407 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  440 (457)
                      .|+|||+++++.....+.+|..+|.+++|+|+..
T Consensus       304 ~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~  337 (355)
T d1nexb2         304 QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL  337 (355)
T ss_dssp             EEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEE
T ss_pred             EEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeE
Confidence            9999999999544456789999999999999753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-32  Score=243.63  Aligned_cols=282  Identities=12%  Similarity=0.094  Sum_probs=206.7

Q ss_pred             CCceEEEEECCCCCEEEEEeCCC-eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  110 (457)
                      ...+++++|+|+++.||.++.+. .|+.|+.....                         ...+..+.+|..        
T Consensus        17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~-------------------------~~~~~~~~gh~~--------   63 (325)
T d1pgua1          17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK-------------------------VPPVVQFTGHGS--------   63 (325)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS-------------------------SCSEEEECTTTT--------
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC-------------------------ccceEEEeCCCC--------
Confidence            34568999999999999887553 24445433322                         224566777751        


Q ss_pred             cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                         ..|++++|+|..++.+|++|+.||+|++||+..++........                                  
T Consensus        64 ---~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~----------------------------------  106 (325)
T d1pgua1          64 ---SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN----------------------------------  106 (325)
T ss_dssp             ---SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE----------------------------------
T ss_pred             ---CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecc----------------------------------
Confidence               6799999976567889999999999999999876543222110                                  


Q ss_pred             ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                        ....+ ..|..+|.+++|++++++++++   .++.+++|+.+ .+..+..       +.+|.
T Consensus       107 ------------------~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~h~  159 (325)
T d1pgua1         107 ------------------VKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGE-------VSGHS  159 (325)
T ss_dssp             ------------------EEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEE-------CCSCS
T ss_pred             ------------------ccccc-ccccCcEEEEEECCCCCccceeeccccceEEEEeec-cccccee-------eeecc
Confidence                              00111 5688899999999999998875   47889999998 5555544       57899


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEe
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD  346 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~  346 (457)
                      ..|.+++|+|+++.++++++.|+.|++||+...+..    .....          ..+|...|.+++|+|+ +.+|++++
T Consensus       160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~----~~~~~----------~~~~~~~v~~v~~~pd~~~~l~s~~  225 (325)
T d1pgua1         160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS----ASDRT----------HHKQGSFVRDVEFSPDSGEFVITVG  225 (325)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE----EEECS----------SSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred             cccccccccccccceEEEeecccccccccccccccc----eeccc----------ccCCCCccEEeeeccccceeccccc
Confidence            999999999998556888999999999999876533    11111          2456778999999997 68888876


Q ss_pred             -cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721          347 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  425 (457)
Q Consensus       347 -~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  425 (457)
                       |+.|++||+++ ++.+..+.+|...+...           ++++.| ||+++|++++.|+.|+|||++++ +.+..+..
T Consensus       226 ~d~~i~iwd~~~-~~~~~~l~~~~~~v~~~-----------~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~-~~~~~~~~  291 (325)
T d1pgua1         226 SDRKISCFDGKS-GEFLKYIEDDQEPVQGG-----------IFALSW-LDSQKFATVGADATIRVWDVTTS-KCVQKWTL  291 (325)
T ss_dssp             TTCCEEEEETTT-CCEEEECCBTTBCCCSC-----------EEEEEE-SSSSEEEEEETTSEEEEEETTTT-EEEEEEEC
T ss_pred             cccceeeeeecc-ccccccccccccccccc-----------eeeeec-cCCCEEEEEeCCCeEEEEECCCC-CEEEEEEe
Confidence             59999999986 78888888887764211           023333 68999999999999999999998 66777766


Q ss_pred             CCCcc--eeeeeccC
Q 012721          426 GKNEN--RKPILQAA  438 (457)
Q Consensus       426 ~~~~v--~~~~~~p~  438 (457)
                      |...+  ..+++.+.
T Consensus       292 ~~~~~~~~~~~~~~~  306 (325)
T d1pgua1         292 DKQQLGNQQVGVVAT  306 (325)
T ss_dssp             CTTCGGGCEEEEEEE
T ss_pred             cCCcccCeEEEEEEC
Confidence            66553  44444433

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-32  Score=252.59  Aligned_cols=237  Identities=10%  Similarity=0.118  Sum_probs=190.1

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ++|++++|  +|++++||+++.|+.|++|+..+++......                                       
T Consensus         8 ~pIt~~~~--s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~---------------------------------------   46 (371)
T d1k8kc_           8 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWVQVHE---------------------------------------   46 (371)
T ss_dssp             SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEEEEEE---------------------------------------
T ss_pred             CCeEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCEEEEEE---------------------------------------
Confidence            78999999  7999999999999999999998776443321                                       


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                                          +.+|..+|.+++|+|++++|++| .|+.|++||++ .+......     .+.+|...|++
T Consensus        47 --------------------l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~-~~~~~~~~-----~~~~~~~~v~~  100 (371)
T d1k8kc_          47 --------------------LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-GRTWKPTL-----VILRINRAARC  100 (371)
T ss_dssp             --------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-TTEEEEEE-----ECCCCSSCEEE
T ss_pred             --------------------ecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec-cccccccc-----ccccccccccc
Confidence                                16899999999999999999999 99999999998 44333322     25678899999


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEE
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  351 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~  351 (457)
                      ++|+|++ +.|++++.|++|++|++.......    ...         .....|...|.+++|+|++++|++|+. +.|+
T Consensus       101 i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~----~~~---------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_         101 VRWAPNE-KKFAVGSGSRVISICYFEQENDWW----VCK---------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEECTTS-SEEEEEETTSSEEEEEEETTTTEE----EEE---------EECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccccccc-ccceeecccCcceeeeeecccccc----ccc---------ccccccccccccccccccccceeccccCcEEE
Confidence            9999999 999999999999999987653211    111         112456788999999999999999874 9999


Q ss_pred             EEeccCCC-----------------CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721          352 LWDIRMDS-----------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  414 (457)
Q Consensus       352 ~wd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~  414 (457)
                      +||.....                 ..+.....|..               .+.+++|+|++++|++++.|+.|++||+.
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s~~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG---------------WVHGVCFSANGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS---------------CEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccC---------------cEEEEEeecccccccccccCCcceEEeee
Confidence            99986411                 11122222332               23789999999999999999999999999


Q ss_pred             CCCceeeEEecCCCcceeeeeccCCcceecccc
Q 012721          415 VGSAGGITVEAGKNENRKPILQAAPRARRSSLS  447 (457)
Q Consensus       415 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~  447 (457)
                      ++ .....+..|..+|.+++|+|++...++|..
T Consensus       232 ~~-~~~~~~~~~~~~v~s~~fs~d~~~la~g~d  263 (371)
T d1k8kc_         232 KK-MAVATLASETLPLLAVTFITESSLVAAGHD  263 (371)
T ss_dssp             GT-TEEEEEECSSCCEEEEEEEETTEEEEEETT
T ss_pred             cc-cceeeeecccccceeeeecCCCCEEEEEcC
Confidence            98 778889999999999999999987777543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-32  Score=250.87  Aligned_cols=312  Identities=9%  Similarity=0.089  Sum_probs=201.4

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|.+.|++++++  +++|+||+.|++|+|||..+.+..                    .| .........|.        
T Consensus        12 ~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~--------------------~~-~~~~~~~~~~~--------   60 (393)
T d1sq9a_          12 AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNE--------------------NP-KDKSYSHFVHK--------   60 (393)
T ss_dssp             CSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTC--------------------CG-GGGEEEEECCT--------
T ss_pred             cccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCC--------------------cc-cceeEeeeecc--------
Confidence            499999999997  479999999999999998765531                    00 01111222233        


Q ss_pred             ccccCcEEEEEE---Eec--CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          110 LEIEEKINRVRW---CAA--PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       110 ~~~~~~V~~v~~---~~s--~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                          ..+..+..   .+.  .++.++++++.||.|++|++............                            
T Consensus        61 ----~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~----------------------------  108 (393)
T d1sq9a_          61 ----SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE----------------------------  108 (393)
T ss_dssp             ----TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE----------------------------
T ss_pred             ----CCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeecc----------------------------
Confidence                22222221   111  12346778999999999998765322111100                            


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-----CCEEEEe-CCCeEEEEEcCCCcceee----
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFN----  254 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~~~-~d~~i~iwd~~~~~~~~~----  254 (457)
                                     ...      .+.  ...+...+..++|.++     +.+++++ .|+.+++|++........    
T Consensus       109 ---------------~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_         109 ---------------KLD------LLD--SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ---------------EEC------CSC--TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             ---------------ccc------eee--eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence                           000      000  0234445667777654     4577777 999999999863221100    


Q ss_pred             ------eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721          255 ------IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (457)
Q Consensus       255 ------~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  328 (457)
                            .+.........+...+.+++|+|++  +|++|+.||+|++||+++++..    ..+..       ...+.+|..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~----~~~~~-------~~~l~~h~~  232 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES-------QHSMINNSN  232 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC-------CC---CCCC
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc----ccccc-------ccccccccc
Confidence                  0000011234556778999999986  7899999999999999987644    22221       233567889


Q ss_pred             ceEEEEEccCCCeEEEEec-C---cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721          329 SISDIKFANDGQHLLSRDY-M---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  404 (457)
Q Consensus       329 ~v~~~~~s~~g~~l~s~~~-~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  404 (457)
                      +|.+++|+|+|++|++|++ +   .|++||+++ ++.+..+............+..+  -..|++++|+||+++|++|+.
T Consensus       233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH--~~~V~~l~fspd~~~l~S~s~  309 (393)
T d1sq9a_         233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAH--SSWVMSLSFNDSGETLCSAGW  309 (393)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSB--SSCEEEEEECSSSSEEEEEET
T ss_pred             eEEEcccccccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecc--cCceeeeccCCCCCeeEEECC
Confidence            9999999999999999864 4   599999986 66666664221111100000000  001379999999999999999


Q ss_pred             CCcEEEEecCCCCceeeEEecCCCcce----eeeeccCCcceec
Q 012721          405 SNLLRIFSHGVGSAGGITVEAGKNENR----KPILQAAPRARRS  444 (457)
Q Consensus       405 dg~i~iw~~~~~~~~~~~~~~~~~~v~----~~~~~p~~~~~~~  444 (457)
                      |++|+|||+.++ +++.++.+|..+|.    .++|+|++.....
T Consensus       310 D~~v~vWd~~~g-~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~  352 (393)
T d1sq9a_         310 DGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAE  352 (393)
T ss_dssp             TSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred             CCEEEEEECCCC-CEEEEECCcCCcccCCccEEEECCCCCEEEE
Confidence            999999999999 78999999998886    4788888766543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.4e-32  Score=242.22  Aligned_cols=253  Identities=12%  Similarity=0.112  Sum_probs=193.0

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .+|.+.|++++|+|+|++||+|+.||+|+||++.+....                         ....+.+|.       
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~-------------------------~~~~~~~~~-------  102 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-------------------------LKTTIPVFS-------  102 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-------------------------EEEEEECSS-------
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc-------------------------ccccccccc-------
Confidence            459999999999999999999999999999999877642                         445678888       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (457)
                           ++|.+++|  ++++++|++++.  +..+++|++++++....+..+ ...|.++.|++.....+.++.        
T Consensus       103 -----~~v~~v~~--s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h-~~~v~~v~~~~~~~~~l~sgs--------  166 (311)
T d1nr0a1         103 -----GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ-ARAMNSVDFKPSRPFRIISGS--------  166 (311)
T ss_dssp             -----SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC-SSCEEEEEECSSSSCEEEEEE--------
T ss_pred             -----Cccccccc--ccccccccccccccccccccccccccccccccccc-ccccccccccccceeeecccc--------
Confidence                 88999999  789999999875  566999999988765544332 345777777654333222111        


Q ss_pred             CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                           .++.+++||.+..   ++.... ..|...|+++.|+|++++|+++ .|+.|++||+. .+.....+........+
T Consensus       167 -----~d~~i~i~d~~~~---~~~~~~-~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~-~~~~~~~~~~~~~~~~~  236 (311)
T d1nr0a1         167 -----DDNTVAIFEGPPF---KFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV-DGTKTGVFEDDSLKNVA  236 (311)
T ss_dssp             -----TTSCEEEEETTTB---EEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEECBCTTSSSCS
T ss_pred             -----ccccccccccccc---cccccc-ccccccccccccCccccccccccccccccccccc-ccccccccccccccccc
Confidence                 2557999998743   344444 7899999999999999999999 99999999998 55566665555455678


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      |...|++++|+|++ ++|++|+.||.|+|||++++++.    +.+..+.          .+...+.++.|  ++++|+++
T Consensus       237 h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~~~----~~l~~~~----------~~~~~~~~~~~--~~~~l~s~  299 (311)
T d1nr0a1         237 HSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVE----KTIPVGT----------RIEDQQLGIIW--TKQALVSI  299 (311)
T ss_dssp             SSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEECCS----------SGGGCEEEEEE--CSSCEEEE
T ss_pred             ccccccccccCCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEECCC----------CccceEEEEEe--cCCEEEEE
Confidence            99999999999999 99999999999999999998654    3333210          11123445555  45677776


Q ss_pred             e-cCcEEEEecc
Q 012721          346 D-YMNLKLWDIR  356 (457)
Q Consensus       346 ~-~~~i~~wd~~  356 (457)
                      + ||.|++||.+
T Consensus       300 s~dG~i~~wd~d  311 (311)
T d1nr0a1         300 SANGFINFVNPE  311 (311)
T ss_dssp             ETTCCEEEEETT
T ss_pred             ECCCEEEEEeCC
Confidence            5 5999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-31  Score=247.65  Aligned_cols=275  Identities=17%  Similarity=0.246  Sum_probs=198.0

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeec-----------------CCCceeeeeecccccccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-----------------HFPFVSSENTLLAEKNFMNE  176 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~  176 (457)
                      +.|++++|  +++|++|++|+ |+.|++||+.+++........                 ....|.+++|++....++..
T Consensus        63 ~~V~~l~f--s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          63 SVVCCVKF--SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             SCCCEEEE--CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CcEEEEEE--CCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            89999999  78999999986 899999999988766554321                 11224455554422211111


Q ss_pred             CCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeee
Q 012721          177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI  255 (457)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~  255 (457)
                                    ..++.+++|+....   +.+... .+|...|.++++++++..++++ .++.+++||.+ .......
T Consensus       140 --------------~~dg~v~i~~~~~~---~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~  200 (388)
T d1erja_         140 --------------AEDRLIRIWDIENR---KIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLT  200 (388)
T ss_dssp             --------------ETTSCEEEEETTTT---EEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEE
T ss_pred             --------------cccccccccccccc---cccccc-ccccccccccccccccccccccccceeeeeeecc-ccccccc
Confidence                          13568999998643   344444 7899999999999999999999 99999999998 4444332


Q ss_pred             eecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (457)
Q Consensus       256 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  335 (457)
                             .. +.....++.+.+..+.+|++++.||.|++||++++....    .+..      ......+|...|.+++|
T Consensus       201 -------~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~----~~~~------~~~~~~~h~~~v~~l~~  262 (388)
T d1erja_         201 -------LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE----RLDS------ENESGTGHKDSVYSVVF  262 (388)
T ss_dssp             -------EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE----EEC------------CCCSSCEEEEEE
T ss_pred             -------cc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccce----eecc------ccccccCCCCCEEEEEE
Confidence                   22 334455666665433899999999999999999875442    1111      11224567889999999


Q ss_pred             ccCCCeEEEEec-CcEEEEeccCCCC-----------ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721          336 ANDGQHLLSRDY-MNLKLWDIRMDST-----------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       336 s~~g~~l~s~~~-~~i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                      +|++++|++++. +.|++||++....           .......|...+               ++++|+|++++|++|+
T Consensus       263 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~sg~  327 (388)
T d1erja_         263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------------LSVATTQNDEYILSGS  327 (388)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCE---------------EEEEECGGGCEEEEEE
T ss_pred             CCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceE---------------EEEEECCCCCEEEEEe
Confidence            999999999875 9999999975211           122223333332               6899999999999999


Q ss_pred             CCCcEEEEecCCCCceeeEEecCCCcceeeee------ccCCcceec
Q 012721          404 YSNLLRIFSHGVGSAGGITVEAGKNENRKPIL------QAAPRARRS  444 (457)
Q Consensus       404 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~------~p~~~~~~~  444 (457)
                      .||.|++||+.++ +...++++|.++|.++++      +|++...++
T Consensus       328 ~dg~i~vwd~~~~-~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s  373 (388)
T d1erja_         328 KDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT  373 (388)
T ss_dssp             TTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             CCCEEEEEECCCC-cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEE
Confidence            9999999999999 778899999999998864      667776666

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-31  Score=239.63  Aligned_cols=253  Identities=16%  Similarity=0.219  Sum_probs=187.0

Q ss_pred             CCceEEEEECC--CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        32 ~~~V~~~~~s~--~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      ...|++++|+|  ++.+||+|+.||+|+|||+..++..                   ..........+..|.        
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~-------------------~~~~~~~~~~~~~~~--------  115 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES-------------------NSVEVNVKSEFQVLA--------  115 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG-------------------TEEEEEEEEEEECCS--------
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcce-------------------eeeeccccccccccc--------
Confidence            56899999998  6689999999999999999766531                   000111223345566        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEee--CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                          ++|.+++|  ++++.++++++  .++.+++|+.++++....                                   
T Consensus       116 ----~~v~~v~~--s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  154 (325)
T d1pgua1         116 ----GPISDISW--DFEGRRLCVVGEGRDNFGVFISWDSGNSLGE-----------------------------------  154 (325)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTTCCEEEE-----------------------------------
T ss_pred             ----CcEEEEEE--CCCCCccceeeccccceEEEEeeccccccee-----------------------------------
Confidence                88999999  78999988765  467899999887754432                                   


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCE-EEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                +.+|...|.+++|+|++.. ++++ .|+.+++||.. ..+....+    ....+
T Consensus       155 --------------------------~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~-~~~~~~~~----~~~~~  203 (325)
T d1pgua1         155 --------------------------VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSASD----RTHHK  203 (325)
T ss_dssp             --------------------------CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEEE----CSSSC
T ss_pred             --------------------------eeecccccccccccccccceEEEeeccccccccccc-ccccceec----ccccC
Confidence                                      1578999999999998875 5667 99999999988 34333322    23567


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc---cCCCeE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA---NDGQHL  342 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---~~g~~l  342 (457)
                      |...|.+++|+|++..+|++++.||.|++||+++++..    ..+..             |...+..+.|+   |+|++|
T Consensus       204 ~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~----~~l~~-------------~~~~v~~~~~s~~~~dg~~l  266 (325)
T d1pgua1         204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL----KYIED-------------DQEPVQGGIFALSWLDSQKF  266 (325)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE----EECCB-------------TTBCCCSCEEEEEESSSSEE
T ss_pred             CCCccEEeeeccccceeccccccccceeeeeecccccc----ccccc-------------cccccccceeeeeccCCCEE
Confidence            88899999999986589999999999999999987643    33333             33444444443   678899


Q ss_pred             EEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          343 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       343 ~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                      ++++ |+.|+|||++. ++++..+..|........           ..+.+.++ .+|++++.||.|++||+
T Consensus       267 ~s~s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         267 ATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQ-----------VGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCE-----------EEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EEEeCCCeEEEEECCC-CCEEEEEEecCCcccCeE-----------EEEEECCC-CEEEEEECCCEEEEEEC
Confidence            9886 59999999986 788888887765432110           23444443 47899999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.1e-31  Score=236.99  Aligned_cols=276  Identities=14%  Similarity=0.153  Sum_probs=203.3

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (457)
                      ....++||.            ++|++++|  +|++++|++|+.|++|++||+.+++............|.+++|.+. +.
T Consensus         4 ~~~~~~GH~------------~~V~~l~~--s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g~   68 (299)
T d1nr0a2           4 IDQVRYGHN------------KAITALSS--SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GD   68 (299)
T ss_dssp             EEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SC
T ss_pred             cceEcCCCC------------CCcEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc-ce
Confidence            567899999            89999999  7899999999999999999999988776654444556778887653 33


Q ss_pred             ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcce
Q 012721          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC  252 (457)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~  252 (457)
                      ++...              .++.+++|+............. ..+...+.+++++|++++++++.++.+++|+..   +.
T Consensus        69 ~~~~~--------------~d~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~---~~  130 (299)
T d1nr0a2          69 LFTVS--------------WDDHLKVVPAGGSGVDSSKAVA-NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG---KL  130 (299)
T ss_dssp             EEEEE--------------TTTEEEEECSSSSSSCTTSCCE-EECSSCEEEEEECTTSSCEEEEESSEEEEEETT---EE
T ss_pred             eeccc--------------ceeeEEEeccCCcccccccccc-ccccccccccccccccccccccccccccccccc---cc
Confidence            33222              2557899988654332222222 567788999999999998888877899999965   22


Q ss_pred             eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (457)
Q Consensus       253 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  332 (457)
                      ...         .....+.+++|+|++ ++|++|+.||.|++||+++++..    . ..           ...|...|++
T Consensus       131 ~~~---------~~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~~----~-~~-----------~~~~~~~i~~  184 (299)
T d1nr0a2         131 TEV---------PISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVS----E-VK-----------TIVHPAEITS  184 (299)
T ss_dssp             EEE---------ECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEE----E-EE-----------EEECSSCEEE
T ss_pred             ccc---------ccccccccccccccc-ccccccccccccccccccccccc----c-cc-----------cccccccccc
Confidence            221         123457899999999 99999999999999999876432    1 11           1346688999


Q ss_pred             EEEccCCCeEEEEec-CcEEEEeccCCCCce---eEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721          333 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPV---ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  408 (457)
Q Consensus       333 ~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i  408 (457)
                      ++|+|++++|++++. +.|++||+.. +...   ..+..|...+               ++++|+|++.+|++|+.||.|
T Consensus       185 ~~~~~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~~h~~~v---------------~~l~~s~~~~~l~sgs~dg~i  248 (299)
T d1nr0a2         185 VAFSNNGAFLVATDQSRKVIPYSVAN-NFELAHTNSWTFHTAKV---------------ACVSWSPDNVRLATGSLDNSV  248 (299)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEGGG-TTEESCCCCCCCCSSCE---------------EEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccccccc---------------ccccccccccceEEEcCCCEE
Confidence            999999999999875 9999999975 3333   3344555544               689999999999999999999


Q ss_pred             EEEecCCCCceee-EEecC-CCcceeeeeccCCcceec
Q 012721          409 RIFSHGVGSAGGI-TVEAG-KNENRKPILQAAPRARRS  444 (457)
Q Consensus       409 ~iw~~~~~~~~~~-~~~~~-~~~v~~~~~~p~~~~~~~  444 (457)
                      ++||+.++..... ....| ...+..+.+.++ ....+
T Consensus       249 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~s  285 (299)
T d1nr0a2         249 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVS  285 (299)
T ss_dssp             EEEETTCTTSCCEEETTSSTTSCEEEEEEEET-TEEEE
T ss_pred             EEEECCCCCcceEEEecCCCCCcEEEEEECCC-CEEEE
Confidence            9999998743332 22333 455666655544 44443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-30  Score=234.31  Aligned_cols=284  Identities=14%  Similarity=0.160  Sum_probs=217.1

Q ss_pred             ccceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccc
Q 012721           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (457)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (457)
                      ..+..++|+||.            ++|++++|  ++++++|++|+.||+|++||+.+++....+..+ ...|.+++|.+.
T Consensus        44 ~~~~~~tL~GH~------------~~I~~l~~--s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~-~~~v~~v~~~~~  108 (340)
T d1tbga_          44 QMRTRRTLRGHL------------AKIYAMHW--GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR-SSWVMTCAYAPS  108 (340)
T ss_dssp             CCCEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTEEEEEEECS-CSCEEEEEECTT
T ss_pred             ceeeeEEECCCC------------CCEEEEEE--CCCCCEEEEEECCCceeeeecccceeEEEEecc-cccEEeeEeecc
Confidence            345667899999            89999999  789999999999999999999999877666543 345788888754


Q ss_pred             cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC
Q 012721          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (457)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~  248 (457)
                      ...++...              .++.+++|+.............+.+|...........+ ..+... .|.....++...
T Consensus       109 ~~~l~~~~--------------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  173 (340)
T d1tbga_         109 GNYVACGG--------------LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIET  173 (340)
T ss_dssp             SSEEEEEE--------------TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEEETTTEEEEEETTT
T ss_pred             ceeeeeec--------------ccceeecccccccccccccceecccccccccccccccc-ccccccccccccccccccc
Confidence            43333322              24578888876644333332233677777766666544 455555 999999998873


Q ss_pred             CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  328 (457)
                       ......       ...+...+....+.+.+ .++++++.|+.|++||+++++..    ..             +.+|..
T Consensus       174 -~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~~----~~-------------~~~h~~  227 (340)
T d1tbga_         174 -GQQTTT-------FTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR----QT-------------FTGHES  227 (340)
T ss_dssp             -TEEEEE-------EECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEE----EE-------------ECCCSS
T ss_pred             -cccccc-------ccccceeEeeecccccc-ceeEEeecCceEEEEECCCCcEE----EE-------------EeCCCC
Confidence             333322       34566778899999998 99999999999999999987543    22             345678


Q ss_pred             ceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc
Q 012721          329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  407 (457)
Q Consensus       329 ~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  407 (457)
                      .|++++|+|++++|++++. +.|++||++. ...+..+.......             .+.+++|+|++++|++|+.||.
T Consensus       228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~~-------------~i~~~~~s~~~~~l~~g~~dg~  293 (340)
T d1tbga_         228 DINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNIIC-------------GITSVSFSKSGRLLLAGYDDFN  293 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCCS-------------CEEEEEECSSSCEEEEEETTSC
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeecc-cccccccccccccC-------------ceEEEEECCCCCEEEEEECCCE
Confidence            9999999999999999875 9999999975 55555543322211             2268999999999999999999


Q ss_pred             EEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          408 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       408 i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      |++||+.++ +....+.+|.++|++++|+|+++..++
T Consensus       294 i~iwd~~~~-~~~~~~~~H~~~V~~l~~s~d~~~l~s  329 (340)
T d1tbga_         294 CNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             EEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             EEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence            999999998 788899999999999999999988776

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-30  Score=232.24  Aligned_cols=308  Identities=14%  Similarity=0.145  Sum_probs=210.9

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~  107 (457)
                      ..+|.+.|.+ +++++|++||||+.||+|+|||+.+++                           ++.++.+|.      
T Consensus        12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~---------------------------~~~~~~~h~------   57 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK---------------------------CLRTLVGHT------   57 (342)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC---------------------------EEEECCCCS------
T ss_pred             ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEEeCCC------
Confidence            4469999865 356679999999999999999998766                           567889998      


Q ss_pred             ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            +.|.+++|  ++  ++|++++.|+.+++|+............... .+.......  .....            
T Consensus        58 ------~~V~~v~~--~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~------------  112 (342)
T d2ovrb2          58 ------GGVWSSQM--RD--NIIISGSTDRTLKVWNAETGECIHTLYGHTS-TVRCMHLHE--KRVVS------------  112 (342)
T ss_dssp             ------SCEEEEEE--ET--TEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEET--TEEEE------------
T ss_pred             ------CCEEEEEe--CC--Cccccceecccccccccccccceecccccce-eEeeeeccc--ccccc------------
Confidence                  88999999  44  3999999999999999887655443322111 111111000  00000            


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                        -..+..+.+|+........   .+ ..+...  .....+....++++ .|+.|++||.. .......       +.+|
T Consensus       113 --~~~d~~i~~~~~~~~~~~~---~~-~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~d~~-~~~~~~~-------~~~~  176 (342)
T d2ovrb2         113 --GSRDATLRVWDIETGQCLH---VL-MGHVAA--VRCVQYDGRRVVSGAYDFMVKVWDPE-TETCLHT-------LQGH  176 (342)
T ss_dssp             --EETTSEEEEEESSSCCEEE---EE-ECCSSC--EEEEEECSSCEEEEETTSCEEEEEGG-GTEEEEE-------ECCC
T ss_pred             --cccceeEEEeeccccccee---ee-eccccc--ceeeccccceeeeecCCCeEEEeecc-cceeeEE-------EcCc
Confidence              0123467788876432221   11 122222  22333455667777 99999999998 4555443       4667


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~  346 (457)
                      ...+..+  .+++ .++++++.||.|++||++.++..    ..             +.+|...+.++.++  +++|++++
T Consensus       177 ~~~~~~~--~~~~-~~l~s~~~dg~i~~~d~~~~~~~----~~-------------~~~~~~~v~~~~~~--~~~l~s~s  234 (342)
T d2ovrb2         177 TNRVYSL--QFDG-IHVVSGSLDTSIRVWDVETGNCI----HT-------------LTGHQSLTSGMELK--DNILVSGN  234 (342)
T ss_dssp             SSCEEEE--EECS-SEEEEEETTSCEEEEETTTCCEE----EE-------------ECCCCSCEEEEEEE--TTEEEEEE
T ss_pred             ccccccc--cCCC-CEEEEEeCCCeEEEeecccceee----eE-------------ecccccceeEEecC--CCEEEEEc
Confidence            6666554  4566 88999999999999999987543    22             23456778887766  56899887


Q ss_pred             c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE--
Q 012721          347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV--  423 (457)
Q Consensus       347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~--  423 (457)
                      . +.|++||+.. .+....+..+.....              ...++++++.++++|+.||+|++||++++ +.+..+  
T Consensus       235 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg-~~i~~~~~  298 (342)
T d2ovrb2         235 ADSTVKIWDIKT-GQCLQTLQGPNKHQS--------------AVTCLQFNKNFVITSSDDGTVKLWDLKTG-EFIRNLVT  298 (342)
T ss_dssp             TTSCEEEEETTT-CCEEEEECSTTSCSS--------------CEEEEEECSSEEEEEETTSEEEEEETTTC-CEEEEEEE
T ss_pred             CCCEEEEEeccc-ccccccccccceeee--------------ceeecccCCCeeEEEcCCCEEEEEECCCC-CEEEEEec
Confidence            5 9999999975 666666665443221              12444556779999999999999999999 455544  


Q ss_pred             ---ecCCCcceeeeeccCCcceeccccc
Q 012721          424 ---EAGKNENRKPILQAAPRARRSSLSN  448 (457)
Q Consensus       424 ---~~~~~~v~~~~~~p~~~~~~~~~~~  448 (457)
                         .+|.++|++++|+|++...++|-..
T Consensus       299 ~~~~~~~~~v~~v~~s~~~~~la~g~~d  326 (342)
T d2ovrb2         299 LESGGSGGVVWRIRASNTKLVCAVGSRN  326 (342)
T ss_dssp             CTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred             ccCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence               3678899999999999887775443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-30  Score=231.79  Aligned_cols=241  Identities=20%  Similarity=0.347  Sum_probs=204.6

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|.+++|+|++.+++++..++.+.+|+....+                           ....+.+|.       
T Consensus        56 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~-------  101 (317)
T d1vyhc1          56 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE---------------------------CIRTMHGHD-------  101 (317)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC---------------------------EEECCCCCS-------
T ss_pred             eCCCCcEEEEeeecccccccccccccccccccccccc---------------------------ccccccccc-------
Confidence            3489999999999999999999999999999977655                           334566677       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..+.++.|  ++++..+++++.|+.+++|++.+++....+                                   
T Consensus       102 -----~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----------------------------------  139 (317)
T d1vyhc1         102 -----HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVKTF-----------------------------------  139 (317)
T ss_dssp             -----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------
T ss_pred             -----ccceeeec--cCCCceEEeeccCcceeEeecccceeeeEE-----------------------------------
Confidence                 77999999  688999999999999999999887654432                                   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                .+|...+.+++|+|++.+|+++ .|+.|++|++. .......       +.+|.
T Consensus       140 --------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~-~~~~~~~-------~~~~~  185 (317)
T d1vyhc1         140 --------------------------TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-TKECKAE-------LREHR  185 (317)
T ss_dssp             --------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCS
T ss_pred             --------------------------ccCCCcceeeecccCCCEEEEEeCCCeEEEEeec-cceeeEE-------EecCC
Confidence                                      4678889999999999999999 99999999998 4544443       56788


Q ss_pred             CceEEEEEecCCc-------------------cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721          268 EVITSAEFHPIYC-------------------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (457)
Q Consensus       268 ~~i~~v~~~p~~~-------------------~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  328 (457)
                      ..+.+++|+|++.                   .++++++.|+.|++||+++++..    ..             +.+|..
T Consensus       186 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~----~~-------------~~~~~~  248 (317)
T d1vyhc1         186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL----MT-------------LVGHDN  248 (317)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE----EE-------------EECCSS
T ss_pred             CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE----EE-------------EeCCCC
Confidence            8899998887641                   46899999999999999987543    22             345678


Q ss_pred             ceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc
Q 012721          329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  407 (457)
Q Consensus       329 ~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  407 (457)
                      .|.+++|+|++++|++++. |.|++||++. ++++..+.+|...+               ++++|+|++++|++|+.||+
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~V---------------~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFV---------------TSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCE---------------EEEEECSSSSCEEEEETTSE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCe
Confidence            9999999999999998874 9999999986 88899999998765               79999999999999999999


Q ss_pred             EEEEe
Q 012721          408 LRIFS  412 (457)
Q Consensus       408 i~iw~  412 (457)
                      |+|||
T Consensus       313 i~iWd  317 (317)
T d1vyhc1         313 VKVWE  317 (317)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.6e-30  Score=235.80  Aligned_cols=324  Identities=8%  Similarity=0.042  Sum_probs=212.0

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|++|+|+|++++||+|+.||+|+|||++.....                       . .+....+|.       
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~-----------------------~-~~~~~~~h~-------   56 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-----------------------V-DLLQSLRYK-------   56 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-----------------------E-EEEEEEECS-------
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-----------------------e-EEEEecCCC-------
Confidence            349999999999999999999999999999999876531                       1 222333577       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ++|.+++|+| .++.+|++|+.|+.|++|++..+..................+......++..            
T Consensus        57 -----~~V~~v~f~~-~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  118 (342)
T d1yfqa_          57 -----HPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA------------  118 (342)
T ss_dssp             -----SCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEE------------
T ss_pred             -----CCEEEEEEeC-CCCCEEEEcccccceeeeeccccccccccccccccccccccccccccccccc------------
Confidence                 8899999964 4466899999999999999988765544333222211111111111111111            


Q ss_pred             ccccccceEEEeccCccccccceeeccCC--CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAH--DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                        ..++.+++||.+..............+  ......+.+.+++..++++ .|+.|++||+..........     ....
T Consensus       119 --~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~~~~  191 (342)
T d1yfqa_         119 --SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI-----EESG  191 (342)
T ss_dssp             --ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEE-----EECS
T ss_pred             --ccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceee-----eecc
Confidence              224578999986533222221111222  2334556677788899998 99999999998433322211     1233


Q ss_pred             CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~  345 (457)
                      +...+.+..+.+.....+++++.||.+.+|+................  ..........+|...+++++|+|++++|++|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg  269 (342)
T d1yfqa_         192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF--RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA  269 (342)
T ss_dssp             CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE--ECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred             cccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee--eeeeeccCCCcccccceeEEecCCccEEEEE
Confidence            44556666666655489999999999999998765322111111100  0011112235677889999999999999998


Q ss_pred             ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      +. |.|++||+++ ++.+..+..+...                ..++|+|++++|++++.|+.+++|.....     .++
T Consensus       270 ~~Dg~v~vWD~~~-~~~l~~~~~~~~~----------------~~~~~s~~~~~l~~a~sdd~~~~~~~~~~-----~~~  327 (342)
T d1yfqa_         270 GSDGIISCWNLQT-RKKIKNFAKFNED----------------SVVKIACSDNILCLATSDDTFKTNAAIDQ-----TIE  327 (342)
T ss_dssp             ETTSCEEEEETTT-TEEEEECCCCSSS----------------EEEEEEECSSEEEEEEECTHHHHCSSSCT-----TSC
T ss_pred             CCCCEEEEEECCC-CcEEEEecCCCCC----------------EEEEEEeCCCEEEEEEcCCcEEEeeeeCC-----Ccc
Confidence            75 9999999986 7777776543332                36889999999999999999888865322     344


Q ss_pred             cCCCccee
Q 012721          425 AGKNENRK  432 (457)
Q Consensus       425 ~~~~~v~~  432 (457)
                      .|...|..
T Consensus       328 ~~~~~i~~  335 (342)
T d1yfqa_         328 LNASSIYI  335 (342)
T ss_dssp             CCCCEEEE
T ss_pred             CCCCeEEE
Confidence            45555543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-29  Score=221.51  Aligned_cols=271  Identities=15%  Similarity=0.275  Sum_probs=197.5

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|...|+|++|  ||++||||+.||+|+|||+.+++                           ++.++.+|.        
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~---------------------------~~~~l~~H~--------   55 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHT--------   55 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCS--------
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEecCC--------
Confidence            47889999776  69999999999999999998765                           567889999        


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          +.|.+++|    ++++|++++.|+.|++|++..+.............   ..+....+.++.              
T Consensus        56 ----~~V~~v~~----~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------------  110 (293)
T d1p22a2          56 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV---LHLRFNNGMMVT--------------  110 (293)
T ss_dssp             ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE---EEEECCTTEEEE--------------
T ss_pred             ----CCEeeeec----ccceeeccccccccccccccccccccccccccccc---ccccccccceee--------------
Confidence                88999987    46799999999999999999887655443222110   011111111110              


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                      ....+.+.+|+............+ ..|...+.++.+.+  ..++++ .|+.|++||++ ..+....       +.++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~-~~~~~~~-------~~~~~~  179 (293)
T d1p22a2         111 CSKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTS-TCEFVRT-------LNGHKR  179 (293)
T ss_dssp             EETTSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEEET--TEEEEEETTSEEEEEETT-TCCEEEE-------EECCSS
T ss_pred             cccccceeEeeccccccccccccc-cccccccccceecc--cccccccCCCceeeecCC-CCcEEEE-------Eccccc
Confidence            123447889998776555555544 77888888888764  456676 99999999998 5555544       466777


Q ss_pred             ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-  347 (457)
                      .+..+.+++   ..+++++.||.|++||+++.+..    ..+             .+|...+..  +++++.+|++++. 
T Consensus       180 ~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~----~~~-------------~~~~~~v~~--~~~~~~~l~sg~~d  237 (293)
T d1p22a2         180 GIACLQYRD---RLVVSGSSDNTIRLWDIECGACL----RVL-------------EGHEELVRC--IRFDNKRIVSGAYD  237 (293)
T ss_dssp             CEEEEEEET---TEEEEEETTSCEEEEETTTCCEE----EEE-------------CCCSSCEEE--EECCSSEEEEEETT
T ss_pred             ccccccCCC---CeEEEecCCCEEEEEecccceee----eee-------------cccceeeee--ccccceEEEEEcCC
Confidence            788777653   67999999999999999987543    222             223455554  5677889998875 


Q ss_pred             CcEEEEeccCC--------CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          348 MNLKLWDIRMD--------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       348 ~~i~~wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      |.|++||+...        ...+..+.+|...+               ++++|  |+.+|++++.||+|+|||
T Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V---------------~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV---------------FRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCC---------------CCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             CEEEEEECCCCccccccCCceeeEEecCCCCCE---------------EEEEE--cCCEEEEEecCCEEEEeC
Confidence            99999998531        23466777888765               57888  567899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=225.00  Aligned_cols=253  Identities=15%  Similarity=0.109  Sum_probs=191.6

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      .+|.++|++++|+|    |+||+.||+|++||+.++                                .++|.       
T Consensus        10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------------------------------~~~h~-------   46 (287)
T d1pgua2          10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------------------------------HQDHS-------   46 (287)
T ss_dssp             CCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------------------------------ECCCC-------
T ss_pred             CCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------------------------------CCCCC-------
Confidence            45999999999997    999999999999997543                                34677       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..|.++.+  ++ +..+++++.|+++++|++...+                                        
T Consensus        47 -----~~V~~~~~--~~-~~~~~s~s~D~~v~~w~~~~~~----------------------------------------   78 (287)
T d1pgua2          47 -----NLIVSLDN--SK-AQEYSSISWDDTLKVNGITKHE----------------------------------------   78 (287)
T ss_dssp             -----SCEEEEEC--CS-TTCCEEEETTTEEEETTEEEEE----------------------------------------
T ss_pred             -----CCEEEEEe--cC-CCeEEEEeeccccccccccccc----------------------------------------
Confidence                 78999998  44 4578999999999999976532                                        


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
                                                  ....+.++++++++..++++.++.+.+|+.. .+.....+.        +..
T Consensus        79 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~  121 (287)
T d1pgua2          79 ----------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSF-TGDIIKSVR--------LNS  121 (287)
T ss_dssp             ----------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETT-TCCEEEEEE--------CSS
T ss_pred             ----------------------------cccceeeeeeccCCceEEEeecccceeeecc-ceeeeeecc--------ccc
Confidence                                        1224667888888888888877788999987 555554432        112


Q ss_pred             ceEEEEEecCCccEEEEEccC-CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          269 VITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       269 ~i~~v~~~p~~~~~l~~~~~d-g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      .  ..++++++ ..+++++.+ +.+++|++...+...    .+            ...|...+++++|+|++.+|++|+.
T Consensus       122 ~--~~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~----~~------------~~~~~~~v~~~~~s~~~~~l~~g~~  182 (287)
T d1pgua2         122 P--GSAVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSF----DL------------KTPLRAKPSYISISPSETYIAAGDV  182 (287)
T ss_dssp             C--EEEEEECS-SEEEEEETTTSCEEEEETTEEEEEE----EC------------SSCCSSCEEEEEECTTSSEEEEEET
T ss_pred             e--eeeeeccC-cceeeeccccceeeeeeccccceee----ee------------eeccCCceeEEEeccCccccccccc
Confidence            2  34567777 666666665 579999987654221    11            1224568999999999999999875


Q ss_pred             -CcEEEEeccCCCCc-eeEeeeccccccccccccCCCCccccceEEEcC----------CCcEEEEEeCCCcEEEEecCC
Q 012721          348 -MNLKLWDIRMDSTP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG----------DGLHFATGSYSNLLRIFSHGV  415 (457)
Q Consensus       348 -~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------d~~~l~s~~~dg~i~iw~~~~  415 (457)
                       |.|++||+.. +.. ...+..|...+               .+++|+|          ++.+|++|+.|++|++||+++
T Consensus       183 dg~i~i~d~~~-~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         183 MGKILLYDLQS-REVKTSRWAFRTSKI---------------NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             TSCEEEEETTT-TEEEECCSCCCSSCE---------------EEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             cccccceeecc-ccccccccccccccc---------------ceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence             9999999975 433 33456676654               5777876          457899999999999999988


Q ss_pred             CCceeeEEecCCCcceeeeeccCCcceec
Q 012721          416 GSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       416 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +.+....+.+|..+|.++.|+|++.....
T Consensus       247 ~~~~~~~~~~h~~~V~~v~~~~~~~l~s~  275 (287)
T d1pgua2         247 PMKIIKALNAHKDGVNNLLWETPSTLVSS  275 (287)
T ss_dssp             TTCCEEETTSSTTCEEEEEEEETTEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEECCCCEEEEE
Confidence            76778888999999999999999764443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9e-28  Score=218.84  Aligned_cols=293  Identities=15%  Similarity=0.165  Sum_probs=194.0

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.++|++++|+|+ .+|++|+.||+|++|+.......                           .....+...     
T Consensus        50 ~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~---------------------------~~~~~~~~~-----   96 (355)
T d1nexb2          50 SGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCT---------------------------HVFEGHNST-----   96 (355)
T ss_dssp             ECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEE---------------------------EEECCCSSC-----
T ss_pred             ECCCCCEEEEEEcCC-CEEEEEecccccccccccccccc---------------------------ccccccccc-----
Confidence            349999999999985 58999999999999998766531                           122222200     


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccccccc---CCCCCceec
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE---HNPPSFAHG  185 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  185 (457)
                           ..+....+  .+++.++++++.|+.|++|++..+.................. .......+..   .........
T Consensus        97 -----~~~~~~~~--~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~  168 (355)
T d1nexb2          97 -----VRCLDIVE--YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT-PEENPYFVGVLRGHMASVRTVS  168 (355)
T ss_dssp             -----EEEEEEEE--ETTEEEEEEEETTSEEEEEECCC-----------CCCEEESC-TTTCTTEEEEEECCSSCEEEEE
T ss_pred             -----cccccccc--ccccceeeeecCCCcEEEEEccCCceeccccccceeccceec-cccccceeeeeeeccccccccc
Confidence                 22344444  678889999999999999999876544332211111000000 0000000000   000011112


Q ss_pred             cCCcc----ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721          186 YHLEW----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       186 ~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                      .++..    ..++.+++||....   +.+... .++...+.++.++|++..++++ .|+.|++||++ .+.....     
T Consensus       169 ~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~-----  238 (355)
T d1nexb2         169 GHGNIVVSGSYDNTLIVWDVAQM---KCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE-NGELMYT-----  238 (355)
T ss_dssp             EETTEEEEEETTSCEEEEETTTT---EEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TCCEEEE-----
T ss_pred             cccceeeeecccceeeeeecccc---cceeee-eccccccccccccccceeeecccccceEEeeecc-ccccccc-----
Confidence            22221    23457999998643   334444 6788889999999999999999 99999999998 5555544     


Q ss_pred             CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEE-EEccCC
Q 012721          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI-KFANDG  339 (457)
Q Consensus       261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~s~~g  339 (457)
                        +.+|...|.++++++   ++|++++.||.|++||+++...      .+.             .|...+.++ .+++++
T Consensus       239 --~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~------~~~-------------~~~~~~~~~~~~~~~~  294 (355)
T d1nexb2         239 --LQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSR------KFS-------------YHHTNLSAITTFYVSD  294 (355)
T ss_dssp             --ECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCE------EEE-------------EECTTCCCCCEEEECS
T ss_pred             --ccccccccccccccc---ceeeeeecccccccccccccce------ecc-------------cccCCceEEEEEcCCC
Confidence              578999999999864   6899999999999999987642      222             233444444 567888


Q ss_pred             CeEEEEecCcEEEEeccCCCCcee-EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          340 QHLLSRDYMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       340 ~~l~s~~~~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                      ++|++|+|+.|++||+++ ++++. .+.+|...+               ++++|+|+ .++++++.||+++||.+
T Consensus       295 ~~l~~g~d~~i~vwd~~t-g~~~~~~~~~~~~~V---------------~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         295 NILVSGSENQFNIYNLRS-GKLVHANILKDADQI---------------WSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             SEEEEEETTEEEEEETTT-CCBCCSCTTTTCSEE---------------EEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CEEEEEeCCEEEEEECCC-CCEEEEEecCCCCCE---------------EEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            999999899999999986 66664 455666554               68999987 57888999999777654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-27  Score=220.51  Aligned_cols=249  Identities=13%  Similarity=0.153  Sum_probs=164.1

Q ss_pred             CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEe
Q 012721           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (457)
Q Consensus        44 ~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~  123 (457)
                      +.++++++.||.|++|++........                      ........       +....+...+..++|.+
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~----------------------~~~~~~~~-------~~~~~~~~~~~~~~~~~  129 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKK----------------------VIFEKLDL-------LDSDMKKHSFWALKWGA  129 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCC----------------------EEEEEECC-------SCTTGGGSCEEEEEEEC
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceee----------------------eeccccce-------eeeccCCCceEEEEEec
Confidence            45788999999999999876553200                      00000110       01111225678888854


Q ss_pred             cC---CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEe
Q 012721          124 AP---NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN  200 (457)
Q Consensus       124 s~---~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  200 (457)
                      ..   .+.++++++.|+++++|++.......... ...                                 ......+. 
T Consensus       130 ~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~-~~~---------------------------------~~~~~~~~-  174 (393)
T d1sq9a_         130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLN---------------------------------WSPTLELQ-  174 (393)
T ss_dssp             CC----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTC---------------------------------CCCEEEEE-
T ss_pred             CCCcccccEEEEEcCCCcEEEEEeecCCccccee-eee---------------------------------eccceecc-
Confidence            32   25688999999999999986432110000 000                                 00000000 


Q ss_pred             ccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCC
Q 012721          201 VGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  279 (457)
Q Consensus       201 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~  279 (457)
                             .... ....+...+.+++|+|++ +|++| .|+.|++||+. .++.+..+... ..+.+|...|.+++|+|+|
T Consensus       175 -------~~~~-~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~-~~~~~~~~~~~-~~l~~h~~~V~~l~~spdg  243 (393)
T d1sq9a_         175 -------GTVE-SPMTPSQFATSVDISERG-LIATGFNNGTVQISELS-TLRPLYNFESQ-HSMINNSNSIRSVKFSPQG  243 (393)
T ss_dssp             -------EEEC-CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT-TTEEEEEEECC-C---CCCCCEEEEEECSST
T ss_pred             -------ccee-cccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec-ccccccccccc-cccccccceEEEccccccc
Confidence                   0000 013556678999999998 88888 99999999998 55555444322 3467899999999999999


Q ss_pred             ccEEEEEccCC---eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEec
Q 012721          280 CNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDI  355 (457)
Q Consensus       280 ~~~l~~~~~dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~  355 (457)
                       ++|++|+.|+   .|++||+++++..    ..+............+.+|...|++++|+|++++|++++. ++|++||+
T Consensus       244 -~~l~sgs~D~t~~~i~lwd~~~g~~~----~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         244 -SLLAIAHDSNSFGCITLYETEFGERI----GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             -TEEEEEEEETTEEEEEEEETTTCCEE----EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             -ceeeeecCCCCcceeeecccccceee----eeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence             9999999887   5999999988654    3333212233334456789999999999999999999875 99999999


Q ss_pred             cCCCCceeEeeecccccc
Q 012721          356 RMDSTPVATFKIHEHLRP  373 (457)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~  373 (457)
                      ++ ++++.++.+|...+.
T Consensus       319 ~~-g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         319 KT-KERITTLNMHCDDIE  335 (393)
T ss_dssp             TT-TEEEEEEECCGGGCS
T ss_pred             CC-CCEEEEECCcCCccc
Confidence            86 899999999988764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.3e-25  Score=202.88  Aligned_cols=300  Identities=9%  Similarity=-0.022  Sum_probs=192.1

Q ss_pred             eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeE--EEeecCCCceeeeeecccc
Q 012721           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAE  170 (457)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  170 (457)
                      .+...++|+            +.|++|+|  +|++++|++|+.|++|++||+..+....  .........|.+++|.+..
T Consensus         3 ~v~~~~~h~------------d~I~~l~f--sp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~   68 (342)
T d1yfqa_           3 IVQIEQAPK------------DYISDIKI--IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT   68 (342)
T ss_dssp             EEECSSCCS------------SCEEEEEE--EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS
T ss_pred             eEEcCCCCC------------CCEEEEEE--eCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC
Confidence            455677888            88999999  6789999999999999999998764322  2233456678999998776


Q ss_pred             ccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC
Q 012721          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (457)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~  249 (457)
                      +..+.++.             .++.+++|+...........   ..+........+.++...++++ .++.+++||++..
T Consensus        69 ~~~l~sg~-------------~d~~v~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~  132 (342)
T d1yfqa_          69 DLQIYVGT-------------VQGEILKVDLIGSPSFQALT---NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY  132 (342)
T ss_dssp             SEEEEEEE-------------TTSCEEEECSSSSSSEEECB---SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHH
T ss_pred             CCEEEEcc-------------cccceeeeeccccccccccc---ccccccccccccccccccccccccccccceeecccc
Confidence            65443322             25689999987543322221   3333444455566678888888 9999999998733


Q ss_pred             cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  329 (457)
                      ..........  .............+.+.+ ..+++++.|+.|++||++..+....    ...          ...+...
T Consensus       133 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~----~~~----------~~~~~~~  195 (342)
T d1yfqa_         133 GDGVIAVKNL--NSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNG----TIE----------ESGLKYQ  195 (342)
T ss_dssp             TTBCEEEEES--CSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCC----EEE----------ECSCSSC
T ss_pred             ccceeeeccc--ccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccce----eee----------ecccccc
Confidence            3222211100  011223344556677887 8999999999999999987643211    110          0112234


Q ss_pred             eEEEEEc-cCCCeEEEEe-cCcEEEEeccCCCCce-----eEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721          330 ISDIKFA-NDGQHLLSRD-YMNLKLWDIRMDSTPV-----ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  402 (457)
Q Consensus       330 v~~~~~s-~~g~~l~s~~-~~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  402 (457)
                      +.+..+. .++..+++++ +|.+.+|+........     ..+..+...      .......+.+.+++|+|++++||+|
T Consensus       196 ~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~sp~~~~lasg  269 (342)
T d1yfqa_         196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN------LKDTNLAYPVNSIEFSPRHKFLYTA  269 (342)
T ss_dssp             EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC------TTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred             eeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec------cCCCcccccceeEEecCCccEEEEE
Confidence            5555554 4567777776 4999999986422111     111111110      0111233345789999999999999


Q ss_pred             eCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecccc
Q 012721          403 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS  447 (457)
Q Consensus       403 ~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~  447 (457)
                      +.||.|++||++++ +.+..+.. ..+...++|+|++...+.+.+
T Consensus       270 ~~Dg~v~vWD~~~~-~~l~~~~~-~~~~~~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         270 GSDGIISCWNLQTR-KKIKNFAK-FNEDSVVKIACSDNILCLATS  312 (342)
T ss_dssp             ETTSCEEEEETTTT-EEEEECCC-CSSSEEEEEEECSSEEEEEEE
T ss_pred             CCCCEEEEEECCCC-cEEEEecC-CCCCEEEEEEeCCCEEEEEEc
Confidence            99999999999998 45555543 234556777888777666433

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.4e-24  Score=193.03  Aligned_cols=281  Identities=14%  Similarity=0.245  Sum_probs=193.1

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ..|.+.|.+++|+|  ++|++|+.|+.+++|+......                           ......+.       
T Consensus        54 ~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~---------------------------~~~~~~~~-------   97 (342)
T d2ovrb2          54 VGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGEC---------------------------IHTLYGHT-------   97 (342)
T ss_dssp             CCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCS-------
T ss_pred             eCCCCCEEEEEeCC--Cccccceecccccccccccccc---------------------------eecccccc-------
Confidence            35999999999996  4999999999999999876543                           12222233       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                           ..+.....    ....++.+..|+.+.+|+..+++.............   .........+.             
T Consensus        98 -----~~~~~~~~----~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------------  152 (342)
T d2ovrb2          98 -----STVRCMHL----HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR---CVQYDGRRVVS-------------  152 (342)
T ss_dssp             -----SCEEEEEE----ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE---EEEECSSCEEE-------------
T ss_pred             -----eeEeeeec----ccccccccccceeEEEeecccccceeeeecccccce---eeccccceeee-------------
Confidence                 34555544    345788899999999999998876655432221100   00000000000             


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                       ...++.+++|+....   .++..+ .+|...+..+.+  ++.+++++ .|+.|++||++ ..+.+..       +.+|.
T Consensus       153 -~~~d~~i~~~d~~~~---~~~~~~-~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~-~~~~~~~-------~~~~~  217 (342)
T d2ovrb2         153 -GAYDFMVKVWDPETE---TCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE-TGNCIHT-------LTGHQ  217 (342)
T ss_dssp             -EETTSCEEEEEGGGT---EEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCC
T ss_pred             -ecCCCeEEEeecccc---eeeEEE-cCcccccccccC--CCCEEEEEeCCCeEEEeecc-cceeeeE-------ecccc
Confidence             123457999998643   344444 677776666555  67899999 99999999998 5555544       56788


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~  347 (457)
                      ..+.++++++   ++|++++.||.|++||+...+..    ..+..          ...|...+.++.++  ++++++|++
T Consensus       218 ~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~----~~~~~----------~~~~~~~~~~~~~~--~~~~~s~s~  278 (342)
T d2ovrb2         218 SLTSGMELKD---NILVSGNADSTVKIWDIKTGQCL----QTLQG----------PNKHQSAVTCLQFN--KNFVITSSD  278 (342)
T ss_dssp             SCEEEEEEET---TEEEEEETTSCEEEEETTTCCEE----EEECS----------TTSCSSCEEEEEEC--SSEEEEEET
T ss_pred             cceeEEecCC---CEEEEEcCCCEEEEEeccccccc----ccccc----------cceeeeceeecccC--CCeeEEEcC
Confidence            8888887764   68999999999999999886543    22222          12345667777665  568888875


Q ss_pred             -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc----EEEEecCC
Q 012721          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL----LRIFSHGV  415 (457)
Q Consensus       348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~----i~iw~~~~  415 (457)
                       |.|++||+++ ++.+..+.......          ....|++++|+|++.+|++|+.||+    |++||++.
T Consensus       279 Dg~i~iwd~~t-g~~i~~~~~~~~~~----------~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         279 DGTVKLWDLKT-GEFIRNLVTLESGG----------SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TSEEEEEETTT-CCEEEEEEECTTGG----------GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEECCC-CCEEEEEecccCCC----------CCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence             9999999986 77777765322110          0011378999999999999999986    99999874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.1e-25  Score=203.88  Aligned_cols=269  Identities=13%  Similarity=0.083  Sum_probs=188.0

Q ss_pred             ccccCCceEEEEECCCCCEEEEEeCCC--eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      .+.|...|.+++|+|||++|++++.+.  .|++||.++++.                            ..+..|.    
T Consensus        38 ~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~----------------------------~~~~~~~----   85 (360)
T d1k32a3          38 KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA----------------------------EKFEENL----   85 (360)
T ss_dssp             ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE----------------------------EECCCCC----
T ss_pred             EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE----------------------------EEeeCCC----
Confidence            356999999999999999998876553  799999987764                            3566777    


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (457)
                              ..|.+++|  +|++++|++++.++.+++|++.+++.....                                
T Consensus        86 --------~~v~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  123 (360)
T d1k32a3          86 --------GNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGKPTVIE--------------------------------  123 (360)
T ss_dssp             --------CSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEE--------------------------------
T ss_pred             --------ceEEeeee--cccccccceeccccccccccccccceeeee--------------------------------
Confidence                    78999999  799999999999999999999887655432                                


Q ss_pred             cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-----------CCCeEEEEEcCCCcceee
Q 012721          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----------DDLRINLWNLEISDQCFN  254 (457)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-----------~d~~i~iwd~~~~~~~~~  254 (457)
                                                   ..|...+.+++|+|+|++|+.+           .++.+++||+. .++...
T Consensus       124 -----------------------------~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~-~~~~~~  173 (360)
T d1k32a3         124 -----------------------------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME-GRKIFA  173 (360)
T ss_dssp             -----------------------------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT-TTEEEE
T ss_pred             -----------------------------ecccccccchhhccceeeeeeeccccccceeeccccceeeeccc-cCceee
Confidence                                         4566788899999999999853           34579999998 454443


Q ss_pred             eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc---ccccccccc-------c-------
Q 012721          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA---RILRDAAES-------H-------  317 (457)
Q Consensus       255 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~---~~~~~~~~~-------~-------  317 (457)
                              +..+...+..++|+|+| +.|++++.++.+.+||...........   .....+...       +       
T Consensus       174 --------~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  244 (360)
T d1k32a3         174 --------ATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA  244 (360)
T ss_dssp             --------CSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCC
T ss_pred             --------ecccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccc
Confidence                    34566778899999999 999999999999999976543211000   000000000       0       


Q ss_pred             -------------------CcccceeccccceEEEEEccCC---CeEEEEec-CcEEEEeccCCCCceeEeeeccccccc
Q 012721          318 -------------------GSKSFFTEIIASISDIKFANDG---QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       318 -------------------~~~~~~~~h~~~v~~~~~s~~g---~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                                         .....+..+...+..+.+.+.+   .+++++++ +.|++||+.. ++ +..+.++   +  
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~~~~~---v--  317 (360)
T d1k32a3         245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-RK-VTEVKNN---L--  317 (360)
T ss_dssp             CCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT-CC-EEEEEEE---E--
T ss_pred             cceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC-Ce-EEEecCC---c--
Confidence                               0000111222222333333222   23344444 8899999975 33 3333222   2  


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcc
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  430 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v  430 (457)
                                   .+++|+|||++|++++.||.|++||++++ ....++..+..|+
T Consensus       318 -------------~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~-~~~~~~~~d~~~~  359 (360)
T d1k32a3         318 -------------TDLRLSADRKTVMVRKDDGKIYTFPLEKP-EDERTVETDKRPL  359 (360)
T ss_dssp             -------------EEEEECTTSCEEEEEETTSCEEEEESSCT-TSCEECCCCSSCE
T ss_pred             -------------CEEEECCCCCEEEEEECCCeEEEEECCCC-CcceEEEeccccc
Confidence                         58999999999999999999999999998 5566666665553

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.6e-25  Score=198.39  Aligned_cols=230  Identities=8%  Similarity=0.045  Sum_probs=171.3

Q ss_pred             ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  109 (457)
                      .|...|.+++|++++ .+++++.|++|++|+....+..                                          
T Consensus        44 ~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~------------------------------------------   80 (287)
T d1pgua2          44 DHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFG------------------------------------------   80 (287)
T ss_dssp             CCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECS------------------------------------------
T ss_pred             CCCCCEEEEEecCCC-eEEEEeeccccccccccccccc------------------------------------------
Confidence            489999999999765 5789999999999997643311                                          


Q ss_pred             ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (457)
Q Consensus       110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (457)
                          ..+..+.+  .+++..++ .+.++.+.+|+..+++......                                   
T Consensus        81 ----~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  118 (287)
T d1pgua2          81 ----SQPKVASA--NNDGFTAV-LTNDDDLLILQSFTGDIIKSVR-----------------------------------  118 (287)
T ss_dssp             ----SCEEEEEE--CSSSEEEE-EETTSEEEEEETTTCCEEEEEE-----------------------------------
T ss_pred             ----cceeeeee--ccCCceEE-Eeecccceeeeccceeeeeecc-----------------------------------
Confidence                34667777  56664544 5556678899988776554322                                   


Q ss_pred             cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  267 (457)
                                                 +...+  .++++++..++++  .++.+++|++. .......+      ...|.
T Consensus       119 ---------------------------~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~-~~~~~~~~------~~~~~  162 (287)
T d1pgua2         119 ---------------------------LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLS-DLEVSFDL------KTPLR  162 (287)
T ss_dssp             ---------------------------CSSCE--EEEEECSSEEEEEETTTSCEEEEETT-EEEEEEEC------SSCCS
T ss_pred             ---------------------------cccee--eeeeccCcceeeeccccceeeeeecc-ccceeeee------eeccC
Confidence                                       11223  3455667777776  45689999987 33322221      34577


Q ss_pred             CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC---------
Q 012721          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---------  338 (457)
Q Consensus       268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---------  338 (457)
                      ..+++++|+|++ .+|++|+.||.|++||+.+++...   .             .+.+|...|.+++|+|.         
T Consensus       163 ~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~---~-------------~~~~h~~~v~~~~~~p~~~~~~~~~~  225 (287)
T d1pgua2         163 AKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVKT---S-------------RWAFRTSKINAISWKPAEKGANEEEI  225 (287)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE---C-------------CSCCCSSCEEEEEECCCC------CC
T ss_pred             CceeEEEeccCc-cccccccccccccceeeccccccc---c-------------cccccccccceeeecccccccccccC
Confidence            889999999999 999999999999999998875321   1             13457789999999875         


Q ss_pred             -CCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          339 -GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       339 -g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                       +.+|++|+ |+.|++||++...+.+..+.+|...+               ++++|+|++ .|++++.|+.|++|++
T Consensus       226 ~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V---------------~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV---------------NNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE---------------EEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCe---------------EEEEECCCC-EEEEEECCCeEEEEEE
Confidence             46888887 49999999976567777778888765               689999986 5889999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=9e-25  Score=199.64  Aligned_cols=272  Identities=15%  Similarity=0.071  Sum_probs=188.5

Q ss_pred             EEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccC
Q 012721           36 SAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (457)
Q Consensus        36 ~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  114 (457)
                      .+-.||| ||+++|+++. |.|++|++.++...                            .+ +|.            .
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~----------------------------~~-~~~------------~   43 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVL----------------------------KV-PEP------------L   43 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEE----------------------------EC-SCC------------S
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEE----------------------------Ec-cCC------------C
Confidence            4567999 9999999874 78999998776531                            22 566            7


Q ss_pred             cEEEEEEEecCCCCEEEEeeCCC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                      .|.+++|  +|||++|++++.+.  .|++||..+++....                                        
T Consensus        44 ~v~~~~~--spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~----------------------------------------   81 (360)
T d1k32a3          44 RIRYVRR--GGDTKVAFIHGTREGDFLGIYDYRTGKAEKF----------------------------------------   81 (360)
T ss_dssp             CEEEEEE--CSSSEEEEEEEETTEEEEEEEETTTCCEEEC----------------------------------------
T ss_pred             CEEEEEE--CCCCCEEEEEEcCCCCEEEEEECCCCcEEEe----------------------------------------
Confidence            8999999  79999998876553  799999988765432                                        


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                                            ..|...|.+++|+|++++|+++ .++.+++|++. ..+....       +..|...+.
T Consensus        82 ----------------------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~  131 (360)
T d1k32a3          82 ----------------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVI-------ERSREAMIT  131 (360)
T ss_dssp             ----------------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEE-------EECSSSCCC
T ss_pred             ----------------------eCCCceEEeeeecccccccceecccccccccccc-ccceeee-------eeccccccc
Confidence                                  5788899999999999999999 99999999998 5555544       456778889


Q ss_pred             EEEEecCCccEEEEEc----------cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721          272 SAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~----------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~  341 (457)
                      +++|+|+| ++|+.+.          .++.+++||+.+++..    ..              ..|...+..++|+|+|++
T Consensus       132 ~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~----~~--------------~~~~~~~~~~~~spdg~~  192 (360)
T d1k32a3         132 DFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF----AA--------------TTENSHDYAPAFDADSKN  192 (360)
T ss_dssp             CEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE----EC--------------SCSSSBEEEEEECTTSCE
T ss_pred             chhhccce-eeeeeeccccccceeeccccceeeeccccCcee----ee--------------cccccccccccccCCCCE
Confidence            99999999 8887653          3457999999887533    11              123456888999999999


Q ss_pred             EEEEec-CcEEEEeccCCC------CceeEeeecccccccccc--------------------ccCCC-CccccceEEEc
Q 012721          342 LLSRDY-MNLKLWDIRMDS------TPVATFKIHEHLRPKLCD--------------------LYNND-SIFDKFECSVS  393 (457)
Q Consensus       342 l~s~~~-~~i~~wd~~~~~------~~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~v~~~~~s  393 (457)
                      |++++. +.+.+||.....      .....+..+.........                    ...-+ .-.....+...
T Consensus       193 l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (360)
T d1k32a3         193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL  272 (360)
T ss_dssp             EEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEEC
T ss_pred             EEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeec
Confidence            998775 999999875311      111112222111110000                    00000 00000122223


Q ss_pred             CC-------------CcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          394 GD-------------GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       394 ~d-------------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      ++             +.++++++.++.|++||+.+++ .    ..|.+.+..++|+||+...+++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~----~~~~~~v~~~~~SpDG~~l~~~  332 (360)
T d1k32a3         273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-V----TEVKNNLTDLRLSADRKTVMVR  332 (360)
T ss_dssp             SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-E----EEEEEEEEEEEECTTSCEEEEE
T ss_pred             CCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe-E----EEecCCcCEEEECCCCCEEEEE
Confidence            22             2245566778899999998873 2    2345568999999999887774

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=3.7e-23  Score=193.66  Aligned_cols=328  Identities=10%  Similarity=-0.016  Sum_probs=196.8

Q ss_pred             cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      +.+...+..++|||||++|++++.|++|++||+.+++..                      ....+....+|.       
T Consensus        58 l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~----------------------~~~~i~~~~~~~-------  108 (426)
T d1hzua2          58 IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT----------------------KVAEIKIGIEAR-------  108 (426)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE----------------------EEEEEECCSEEE-------
T ss_pred             EeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee----------------------EEEEEeCCCCCc-------
Confidence            334467999999999999999999999999999988642                      000112222333       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                           ..+.+++|  +|||+++++ +..++.+++||..++............ +....+........       .....+
T Consensus       109 -----~~~~s~~~--spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------i~~s~d  173 (426)
T d1hzua2         109 -----SVESSKFK--GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT-VDTQTYHPEPRVAA-------IIASHE  173 (426)
T ss_dssp             -----EEEECCST--TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC-SSSCCEESCCCEEE-------EEECSS
T ss_pred             -----ceEEeeee--cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCC-ccceeecCCCceeE-------EEECCC
Confidence                 45666777  789998755 458999999999998776655432211 11111111110000       011111


Q ss_pred             Ccc---c--cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCC
Q 012721          188 LEW---T--ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP  260 (457)
Q Consensus       188 ~~~---~--~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~  260 (457)
                      +..   .  ..+.+.+++.....   .+......+...+..+.++|++++++++  .+..+.+++.. .++........ 
T Consensus       174 ~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~-  248 (426)
T d1hzua2         174 HPEFIVNVKETGKVLLVNYKDID---NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK-DRRLSALVDVG-  248 (426)
T ss_dssp             SSEEEEEETTTTEEEEEECSSSS---SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT-TTEEEEEEECS-
T ss_pred             CCEEEEecCCCCeEEEEEecccc---ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecc-cccEEEEeccC-
Confidence            110   0  01123333332211   1111114677788999999999988876  78889999998 56666554332 


Q ss_pred             CcccCCCCceEEEEEecCCcc--EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721          261 SNMDDLTEVITSAEFHPIYCN--LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (457)
Q Consensus       261 ~~~~~~~~~i~~v~~~p~~~~--~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  338 (457)
                          .+........+...+..  ..+..+.|+.+.+|+........   ..       ......+.+|...+..++|+|+
T Consensus       249 ----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~---~~-------~~~~~~l~g~~~~v~~v~~sPd  314 (426)
T d1hzua2         249 ----KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---YA-------WKKVAELQGQGGGSLFIKTHPK  314 (426)
T ss_dssp             ----SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT---TB-------TSEEEEEECSSSCCCCEECCTT
T ss_pred             ----CcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc---cc-------ceEeEEEecCCCceeEEEcCCC
Confidence                12222223333333212  23344578899999876643211   00       1122346778889999999999


Q ss_pred             CCeEEE-------Ee-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE-----eCC
Q 012721          339 GQHLLS-------RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-----SYS  405 (457)
Q Consensus       339 g~~l~s-------~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-----~~d  405 (457)
                      +++|++       +. +++|++||+.+ ++...++..+.....      ..+....+.+++|||||++|+.+     +.+
T Consensus       315 g~~l~v~~~~~~s~~~~~tv~vwd~~t-~~~~~~~~~~~~~~~------~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~  387 (426)
T d1hzua2         315 SSHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWAD------LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDS  387 (426)
T ss_dssp             CSEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHC------CCSSCCCEEEEEECSSSSEEEEEECCCTTSC
T ss_pred             CceEEEeecCCCCcccCCEEEEEECCC-CCcCeEEeccchhcc------cCCCCccEEEEEECCCCCEEEEEEecCCCCC
Confidence            999995       22 38999999986 555554432211100      00011113688999999977543     358


Q ss_pred             CcEEEEecCCCCceeeEEecCC
Q 012721          406 NLLRIFSHGVGSAGGITVEAGK  427 (457)
Q Consensus       406 g~i~iw~~~~~~~~~~~~~~~~  427 (457)
                      +.|+|||.+++ +....+.++.
T Consensus       388 ~~i~v~D~~T~-k~~~~i~~~~  408 (426)
T d1hzua2         388 SALVVVDDKTL-KLKAVVKDPR  408 (426)
T ss_dssp             CEEEEEETTTT-EEEEEECCTT
T ss_pred             CeEEEEECCCC-eEEEEECCCC
Confidence            88999999999 6667777664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-22  Score=178.79  Aligned_cols=253  Identities=12%  Similarity=0.189  Sum_probs=179.4

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (457)
                      ..|+|++|    ++++|++|+.||+|++||+.+++....+..+ ...|.+++|.   +..+.+.             ..+
T Consensus        16 ~~V~c~~~----d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H-~~~V~~v~~~---~~~l~s~-------------s~D   74 (293)
T d1p22a2          16 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQYD---ERVIITG-------------SSD   74 (293)
T ss_dssp             CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEECCC-SSCEEEEECC---SSEEEEE-------------ETT
T ss_pred             CCEEEEEE----cCCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCCEeeeecc---cceeecc-------------ccc
Confidence            78998765    6889999999999999999999887776543 3456777663   2222211             135


Q ss_pred             cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (457)
Q Consensus       194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  272 (457)
                      +.+++|+.........   . ..+.  .....+.+....++++ .++.+.+|+..........     ..+..|...+..
T Consensus        75 ~~i~~~~~~~~~~~~~---~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~  143 (293)
T d1p22a2          75 STVRVWDVNTGEMLNT---L-IHHC--EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR-----RVLVGHRAAVNV  143 (293)
T ss_dssp             SCEEEEESSSCCEEEE---E-CCCC--SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE-----EEECCCSSCEEE
T ss_pred             cccccccccccccccc---c-cccc--cccccccccccceeecccccceeEeecccccccccc-----cccccccccccc
Confidence            6899999875432221   1 1222  2233344556677777 9999999999844333222     124668888888


Q ss_pred             EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEE
Q 012721          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK  351 (457)
Q Consensus       273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~  351 (457)
                      +.+.+   ..+++++.|+.|++||+++++..    ..+             .+|...+..+.++  +.++++++ |+.|+
T Consensus       144 ~~~~~---~~~~~~s~d~~i~~~d~~~~~~~----~~~-------------~~~~~~v~~~~~~--~~~l~~~~~dg~i~  201 (293)
T d1p22a2         144 VDFDD---KYIVSASGDRTIKVWNTSTCEFV----RTL-------------NGHKRGIACLQYR--DRLVVSGSSDNTIR  201 (293)
T ss_dssp             EEEET---TEEEEEETTSEEEEEETTTCCEE----EEE-------------ECCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             ceecc---cccccccCCCceeeecCCCCcEE----EEE-------------cccccccccccCC--CCeEEEecCCCEEE
Confidence            77765   45888999999999999987543    222             3345567777665  56788775 59999


Q ss_pred             EEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC--------CceeeEE
Q 012721          352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG--------SAGGITV  423 (457)
Q Consensus       352 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~  423 (457)
                      +||++. .+.+..+.++...+                 ..+++++.+|++|+.||.|++||+.++        ......+
T Consensus       202 i~d~~~-~~~~~~~~~~~~~v-----------------~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (293)
T d1p22a2         202 LWDIEC-GACLRVLEGHEELV-----------------RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL  263 (293)
T ss_dssp             EEETTT-CCEEEEECCCSSCE-----------------EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred             EEeccc-ceeeeeecccceee-----------------eeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe
Confidence            999986 77777777776542                 457788999999999999999997542        2456788


Q ss_pred             ecCCCcceeeeeccC
Q 012721          424 EAGKNENRKPILQAA  438 (457)
Q Consensus       424 ~~~~~~v~~~~~~p~  438 (457)
                      .+|.++|.+++|++.
T Consensus       264 ~~H~~~V~~v~~d~~  278 (293)
T d1p22a2         264 VEHSGRVFRLQFDEF  278 (293)
T ss_dssp             CCCSSCCCCEEECSS
T ss_pred             cCCCCCEEEEEEcCC
Confidence            999999999999654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.3e-23  Score=196.78  Aligned_cols=289  Identities=10%  Similarity=0.027  Sum_probs=182.3

Q ss_pred             ECCCC--CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEE
Q 012721           40 FDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (457)
Q Consensus        40 ~s~~~--~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~  117 (457)
                      ++.|.  -++++.+.||+|+|||+.+++                           .+.++..|.             .+.
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~---------------------------~~~~l~~g~-------------~~~   65 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKK---------------------------IVKVIDTGY-------------AVH   65 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCS---------------------------EEEEEECCS-------------SEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCc---------------------------EEEEEeCCC-------------Cee
Confidence            55543  356778899999999999876                           445666654             489


Q ss_pred             EEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceE
Q 012721          118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  197 (457)
Q Consensus       118 ~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  197 (457)
                      .++|  +|||+++++++.|++|++||+.+++..........                                       
T Consensus        66 ~vaf--SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~---------------------------------------  104 (426)
T d1hzua2          66 ISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG---------------------------------------  104 (426)
T ss_dssp             EEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC---------------------------------------
T ss_pred             EEEE--CCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC---------------------------------------
Confidence            9999  89999999999999999999998876544322110                                       


Q ss_pred             EEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCC----cccCCCCceE
Q 012721          198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS----NMDDLTEVIT  271 (457)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~  271 (457)
                                       .+|...+.+++|+|||++++++  .++.+.+||.. .......+.....    ....+.....
T Consensus       105 -----------------~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (426)
T d1hzua2         105 -----------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRVA  166 (426)
T ss_dssp             -----------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred             -----------------CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCC-ccceeEEeeccCCCccceeecCCCcee
Confidence                             3566667788899999987654  89999999998 5555544321100    0011223344


Q ss_pred             EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-Cc
Q 012721          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MN  349 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~  349 (457)
                      .+.+++++..++.+....+.+.+++.......                .....++...+..+.|+|++++++++. + ..
T Consensus       167 ~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~  230 (426)
T d1hzua2         167 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNL----------------TVTSIGAAPFLADGGWDSSHRYFMTAANNSNK  230 (426)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEECSSSSSC----------------EEEEEECCSSEEEEEECTTSCEEEEEETTCSE
T ss_pred             EEEECCCCCEEEEecCCCCeEEEEEeccccce----------------eeEEeccCCccEeeeECCCCcEEEeeeecccc
Confidence            55566665223333334455555554433211                111223456788999999999988765 3 77


Q ss_pred             EEEEeccCCCCceeEeeecccccc-------------c------------ccc-------ccC-------CCCccccceE
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRP-------------K------------LCD-------LYN-------NDSIFDKFEC  390 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~-------------~------------~~~-------~~~-------~~~~~~v~~~  390 (457)
                      +.+++... ++.+...........             .            ...       ...       ...-..+..+
T Consensus       231 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v  309 (426)
T d1hzua2         231 VAVIDSKD-RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI  309 (426)
T ss_dssp             EEEEETTT-TEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCE
T ss_pred             eeeeeccc-ccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEE
Confidence            88888764 443332221100000             0            000       000       0001124689


Q ss_pred             EEcCCCcEEEE-------EeCCCcEEEEecCCCCceeeE--------EecCCCcceeeeeccCCcceec
Q 012721          391 SVSGDGLHFAT-------GSYSNLLRIFSHGVGSAGGIT--------VEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       391 ~~s~d~~~l~s-------~~~dg~i~iw~~~~~~~~~~~--------~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                      +|+||+++|++       ++.|++|+|||+.+++.....        +..|...+..++|+|||.....
T Consensus       310 ~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~v  378 (426)
T d1hzua2         310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF  378 (426)
T ss_dssp             ECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEE
T ss_pred             EcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEE
Confidence            99999999994       556889999999998543332        2345667888999999986644

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=4.2e-22  Score=186.12  Aligned_cols=322  Identities=10%  Similarity=-0.010  Sum_probs=182.4

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (457)
Q Consensus        32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  111 (457)
                      ...+..++|||||++|++++.||+|++||+.+++..                      ....+....+|.          
T Consensus        61 g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~----------------------~~~~i~~~~~~~----------  108 (432)
T d1qksa2          61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT----------------------TVAEIKIGSEAR----------  108 (432)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC----------------------EEEEEECCSEEE----------
T ss_pred             CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce----------------------EEEEEecCCCCC----------
Confidence            357999999999999999999999999999877642                      001112222333          


Q ss_pred             ccCcEEEEEEEecCCCCEE-EEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721          112 IEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (457)
Q Consensus       112 ~~~~V~~v~~~~s~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (457)
                        +.+.+..|  +|||++| ++++.+++|++||..+++........... +....+.+ ++...      ...+++++..
T Consensus       109 --~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~-~~~~~~~~-~~~~~------~v~~s~dg~~  176 (432)
T d1qksa2         109 --SIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-YDEQEYHP-EPRVA------AILASHYRPE  176 (432)
T ss_dssp             --EEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-TTTCCEES-CCCEE------EEEECSSSSE
T ss_pred             --CeEEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcc-ccceeccC-CCcee------EEEECCCCCE
Confidence              44555566  7899976 66788999999999999887765432211 01111111 01000      0112223321


Q ss_pred             -----ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721          191 -----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNM  263 (457)
Q Consensus       191 -----~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~  263 (457)
                           ...+.+.+|+.......+...   ..+......++|+|+|++++++  .++.+.++|.. ..+....+....  .
T Consensus       177 ~~vs~~~~~~i~~~d~~~~~~~~~~~---i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~-~~~~~~~~~~g~--~  250 (432)
T d1qksa2         177 FIVNVKETGKILLVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGG--Q  250 (432)
T ss_dssp             EEEEETTTTEEEEEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSS--S
T ss_pred             EEEEEccCCeEEEEEccCCCcceEEE---EcccCccccceECCCCCEEEEeccccceEEEeecc-cceEEEEeccCc--c
Confidence                 123467777765432222111   2455678899999999987776  78899999998 555555543332  2


Q ss_pred             cCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccC-----------cc-----cceecc
Q 012721          264 DDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHG-----------SK-----SFFTEI  326 (457)
Q Consensus       264 ~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~-----------~~-----~~~~~h  326 (457)
                      ..|........+...+ ...++.. .++.|.+|+..........-++... ...+.           ..     ..+..|
T Consensus       251 ~~~~~~~~~~~~~~~g-~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~-~~~~~g~~~~~~s~p~~~~lw~~~~~~~~  328 (432)
T d1qksa2         251 TPHPGRGANFVHPTFG-PVWATSHMGDDSVALIGTDPEGHPDNAWKILDS-FPALGGGSLFIKTHPNSQYLYVDATLNPE  328 (432)
T ss_dssp             SBCCTTCEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE-EECSCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred             ccccCcccceecCCCC-ceecccccCCceEEecccccccccccccEEEEE-EEcCCCCeEEEEecCCccceeecccCCCC
Confidence            2334444444444444 4444443 4778888887654321100000000 00000           00     001111


Q ss_pred             ccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe--
Q 012721          327 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--  403 (457)
Q Consensus       327 ~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--  403 (457)
                      .....++++ ||++.+++++. +.+++|++.. ...+   ..|...+               .+++|||||++|+.+.  
T Consensus       329 ~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~-~~~l---~~~~~~v---------------~~~~fS~DG~~v~~S~~~  388 (432)
T d1qksa2         329 AEISGSVAV-FDIKAMTGDGSDPEFKTLPIAE-WAGI---TEGQPRV---------------VQGEFNKDGTEVWFSVWN  388 (432)
T ss_dssp             HHHHTCEEE-EEGGGCCCSSSCCCEEEECHHH-HHTC---CSSCCEE---------------EEEEECTTSSEEEEEEEC
T ss_pred             CCeeeEEEE-EechhhcccccCCceEeccccc-cccc---CCCCCcE---------------EEeEECCCCCEEEEEEec
Confidence            112223333 66777776653 7777777642 2111   1222222               5899999999886554  


Q ss_pred             ---CCCcEEEEecCCCCceeeEEecC
Q 012721          404 ---YSNLLRIFSHGVGSAGGITVEAG  426 (457)
Q Consensus       404 ---~dg~i~iw~~~~~~~~~~~~~~~  426 (457)
                         .+|.|.|||.+++ +....+.+.
T Consensus       389 ~~~~~g~i~i~D~~T~-k~~~~i~~~  413 (432)
T d1qksa2         389 GKDQESALVVVDDKTL-ELKHVIKDE  413 (432)
T ss_dssp             CTTSCCEEEEEETTTT-EEEEEECCT
T ss_pred             CCCCCCcEEEEECCCc-eEEeEecCC
Confidence               4688999999999 555666553

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=4.9e-20  Score=163.37  Aligned_cols=245  Identities=11%  Similarity=0.124  Sum_probs=178.2

Q ss_pred             ccCCceEEEEECCCCCEE-EEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        30 ~h~~~V~~~~~s~~~~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ...+.+..++|+|||++| ++++.++.|++||+.+++                           .+..+..+.       
T Consensus        29 ~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~---------------------------~~~~~~~~~-------   74 (301)
T d1l0qa2          29 PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN---------------------------VIATVPAGS-------   74 (301)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE---------------------------EEEEEECSS-------
T ss_pred             ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---------------------------eeeeeeccc-------
Confidence            345678899999999987 466788999999998776                           334555554       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (457)
                            .+..+.|  ++++..+++ +..++.+.+|+..+++.....                                  
T Consensus        75 ------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------  112 (301)
T d1l0qa2          75 ------SPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTV----------------------------------  112 (301)
T ss_dssp             ------SEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEE----------------------------------
T ss_pred             ------ccccccc--ccccccccccccccceeeecccccceeeeec----------------------------------
Confidence                  3678889  678776554 567789999999887655432                                  


Q ss_pred             CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (457)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  265 (457)
                                                  .+.....++.++|++..++.+  .++.+.+|+.. .......+       . 
T Consensus       113 ----------------------------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~-  155 (301)
T d1l0qa2         113 ----------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTV-------S-  155 (301)
T ss_dssp             ----------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------E-
T ss_pred             ----------------------------cccccceEEEeecCCCeeeeeeccccceeeeecc-ccceeeec-------c-
Confidence                                        233456789999999987654  78999999998 45544432       2 


Q ss_pred             CCCceEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          266 LTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       266 ~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      +...+..+.++|++ ..++++. .++.+.+|+....+..    .....              ......++|++++..++.
T Consensus       156 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~~~v  216 (301)
T d1l0qa2         156 VGRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKAYV  216 (301)
T ss_dssp             CCSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEEEE
T ss_pred             cCCCceEEEeeccc-cceeeecccccccccccccceeee----ecccc--------------cCCcceeecccccccccc
Confidence            33457889999998 6555555 5577888887765433    12211              245778999999998875


Q ss_pred             Ee---c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEE-EEEeCCCcEEEEecCCCCce
Q 012721          345 RD---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSAG  419 (457)
Q Consensus       345 ~~---~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~dg~i~iw~~~~~~~~  419 (457)
                      +.   . +.|++||+.+ ++.+..+..+...                ..++|+|||++| ++++.|++|++||+.++ +.
T Consensus       217 ~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~~----------------~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~  278 (301)
T d1l0qa2         217 TNVDKYFNTVSMIDTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFCNTVSVIDTATN-TI  278 (301)
T ss_dssp             EEECSSCCEEEEEETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTT-EE
T ss_pred             ccccceeeeeeeeecCC-CeEEEEEcCCCCE----------------EEEEEeCCCCEEEEEECCCCeEEEEECCCC-eE
Confidence            42   2 7899999986 6777776655443                589999999987 57778999999999999 55


Q ss_pred             eeEEe
Q 012721          420 GITVE  424 (457)
Q Consensus       420 ~~~~~  424 (457)
                      ..++.
T Consensus       279 ~~~~~  283 (301)
T d1l0qa2         279 TATMA  283 (301)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.1e-20  Score=170.25  Aligned_cols=254  Identities=10%  Similarity=0.067  Sum_probs=173.4

Q ss_pred             CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEec
Q 012721           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (457)
Q Consensus        45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s  124 (457)
                      +||++++.|++|+|||+.+++                           .+.++..+..          ...+.+++|  +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~---------------------------~~~~i~~~~~----------~~~~~~i~~--s   42 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA---------------------------VDKVITIADA----------GPTPMVPMV--A   42 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE---------------------------EEEEEECTTC----------TTCCCCEEE--C
T ss_pred             eEEEEEcCCCEEEEEECCCCe---------------------------EEEEEECCCC----------CCCccEEEE--C
Confidence            589999999999999998776                           3444544331          045778999  7


Q ss_pred             CCCCEEE-EeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccC
Q 012721          125 PNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (457)
Q Consensus       125 ~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  203 (457)
                      |||++++ +++.++.|.+||+.+++..........                                             
T Consensus        43 pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~---------------------------------------------   77 (337)
T d1pbyb_          43 PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------------------------------------------   77 (337)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---------------------------------------------
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC---------------------------------------------
Confidence            9999874 567899999999999887655432211                                             


Q ss_pred             ccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C------------CCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       204 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                 ..+...+..++|+|++++++++ .            +..+.+||.. .......+       . +...+
T Consensus        78 -----------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~-------~-~~~~~  137 (337)
T d1pbyb_          78 -----------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAF-------E-APRQI  137 (337)
T ss_dssp             -----------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEE-------E-CCSSC
T ss_pred             -----------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc-CCeEEEec-------c-ccCCc
Confidence                       1223345678999999998875 3            5678889988 45554442       2 33457


Q ss_pred             EEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc---------------ccccccc---------------------
Q 012721          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA---------------RILRDAA---------------------  314 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~---------------~~~~~~~---------------------  314 (457)
                      ..++|+|+| +++++++.+  +.+||..+++......               .......                     
T Consensus       138 ~~~~~s~dg-~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T d1pbyb_         138 TMLAWARDG-SKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             CCEEECTTS-SCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             eEEEEcCCC-CEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeee
Confidence            789999999 888887654  6789988765331100               0000000                     


Q ss_pred             -------------cccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCC
Q 012721          315 -------------ESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN  381 (457)
Q Consensus       315 -------------~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (457)
                                   ........+..+...+..+.++|++.+++.++ +.|++||+.+ ++.+..+......          
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~-~~~~~~~~~~~~~----------  282 (337)
T d1pbyb_         215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESFDLEK-NASIKRVPLPHSY----------  282 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEEETTT-TEEEEEEECSSCC----------
T ss_pred             cccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc-ccEEEEECCC-CcEEEEEcCCCCE----------
Confidence                         00000011234455667778888888877654 8999999986 7777776543322          


Q ss_pred             CCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          382 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       382 ~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                            .+++|+|||++|++++.|+.|++||..++ +....+.
T Consensus       283 ------~~~~~s~dG~~l~v~~~~~~i~v~D~~t~-~~v~~i~  318 (337)
T d1pbyb_         283 ------YSVNVSTDGSTVWLGGALGDLAAYDAETL-EKKGQVD  318 (337)
T ss_dssp             ------CEEEECTTSCEEEEESBSSEEEEEETTTC-CEEEEEE
T ss_pred             ------EEEEECCCCCEEEEEeCCCcEEEEECCCC-cEEEEEE
Confidence                  58999999999999999999999999998 5555554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=7.1e-21  Score=172.33  Aligned_cols=267  Identities=8%  Similarity=0.028  Sum_probs=174.4

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc-CCccccccccccccCcE
Q 012721           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIEEKI  116 (457)
Q Consensus        38 ~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V  116 (457)
                      ++|+++++||++++.+++|.+||+.+++                           .+.+++. |.            ..+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~---------------------------~~~t~~~~~~------------~~p   42 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDT---------------------------VYKSCVMPDK------------FGP   42 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTE---------------------------EEEEEECSSC------------CSS
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCC---------------------------EEEEEEcCCC------------CCc
Confidence            4789999999999999999999999876                           3344442 33            457


Q ss_pred             EEEEEEecCCCCEEE-EeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721          117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (457)
Q Consensus       117 ~~v~~~~s~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (457)
                      .+++|  +|||++++ +++.++.|.+||+.+++...........                                    
T Consensus        43 ~~l~~--spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~------------------------------------   84 (346)
T d1jmxb_          43 GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP------------------------------------   84 (346)
T ss_dssp             CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST------------------------------------
T ss_pred             ceEEE--CCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc------------------------------------
Confidence            89999  79998875 4568899999999998776554322111                                    


Q ss_pred             eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-------------CCCeEEEEEcCCCcceeeeeecCCCc
Q 012721          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                                         ..+...+..++|+|||++++++             .+..+.+|+.. .+.....+.     
T Consensus        85 -------------------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~-----  139 (346)
T d1jmxb_          85 -------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGLEAKPVR-----  139 (346)
T ss_dssp             -------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGGGBCCSE-----
T ss_pred             -------------------cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc-cceeeeEEE-----
Confidence                               1122245568888888887654             25677888776 333222110     


Q ss_pred             ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc-----------------------------------
Q 012721          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-----------------------------------  307 (457)
Q Consensus       263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-----------------------------------  307 (457)
                      .......+..+.+++++ .+++++   +.+.+||+.+++......                                   
T Consensus       140 ~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (346)
T d1jmxb_         140 TFPMPRQVYLMRAADDG-SLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR  215 (346)
T ss_dssp             EEECCSSCCCEEECTTS-CEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred             eeeccCceEEEEecCCC-EEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeee
Confidence            11112334445566665 555432   346777776654321000                                   


Q ss_pred             -----------------ccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccc
Q 012721          308 -----------------RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       308 -----------------~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                                       ..+.. .........+..|...+..+.+++++.+++...++.|.+||..+ ++.+..+.....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~  293 (346)
T d1jmxb_         216 FKDDKQDPATADLLYGYLSVDL-KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ-RKLIKAANLDHT  293 (346)
T ss_dssp             C-------CCCEEEEEEEEEET-TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTT-TEEEEEEECSSC
T ss_pred             eccCceeEeeccCCceEEEEEC-CCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCC-CcEEEEEcCCCC
Confidence                             00000 00000012234566678889999999999888778999999975 677766653332


Q ss_pred             cccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCc
Q 012721          371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  429 (457)
Q Consensus       371 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~  429 (457)
                      .                .+++|+|||++|++++.|+.|++||+.++ +.+..+....++
T Consensus       294 ~----------------~~va~s~DG~~l~v~~~d~~v~v~D~~t~-~~i~~i~~p~g~  335 (346)
T d1jmxb_         294 Y----------------YCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIKLPGGD  335 (346)
T ss_dssp             C----------------CEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEECSSSC
T ss_pred             E----------------EEEEEcCCCCEEEEEeCCCcEEEEECccC-CEEEEEECCCCC
Confidence            2                58999999999999999999999999999 666666644433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=1.4e-20  Score=175.68  Aligned_cols=315  Identities=10%  Similarity=0.029  Sum_probs=193.5

Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEE
Q 012721           41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  120 (457)
Q Consensus        41 s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~  120 (457)
                      +++.-++++.+.+|+|.|||..+++                           .+..+..+.             .+..++
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~---------------------------v~~~~~~g~-------------~~~~v~   68 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYE---------------------------IKTVLDTGY-------------AVHISR   68 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCC---------------------------EEEEEECSS-------------CEEEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCc---------------------------EEEEEeCCC-------------CeeEEE
Confidence            3333445888999999999999877                           445565553             489999


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc--c---cccc
Q 012721          121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW--T---ENMA  195 (457)
Q Consensus       121 ~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~  195 (457)
                      |  +|||+++++++.|+.|++||+.+++...............+.+.              ..++++|++  .   .++.
T Consensus        69 f--SpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s--------------~~~SpDG~~l~vs~~~~~~  132 (432)
T d1qksa2          69 L--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS--------------KMEGWEDKYAIAGAYWPPQ  132 (432)
T ss_dssp             E--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC--------------CSTTCTTTEEEEEEEETTE
T ss_pred             E--CCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe--------------cccCCCCCEEEEEcCCCCe
Confidence            9  89999999999999999999988765444333222212222221              122334432  1   2447


Q ss_pred             eEEEeccCcccccccee-------eccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          196 TKIANVGNSVHARCQKV-------YPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       196 i~~~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                      +++||..+.........       ....+......+.++|++..++.+  .++.|.+||.. ..+...+..      -.+
T Consensus       133 v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~-~~~~~~~~~------i~~  205 (432)
T d1qksa2         133 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT-DLNNLKTTE------ISA  205 (432)
T ss_dssp             EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT-CSSEEEEEE------EEC
T ss_pred             EEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc-CCCcceEEE------Ecc
Confidence            99999875432211110       002345567788999999887665  78999999987 444333321      124


Q ss_pred             CCceEEEEEecCCccEEEEE-ccCCeEEEEEccCCeeecccccc-ccccc------------------cc-c-------C
Q 012721          267 TEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARI-LRDAA------------------ES-H-------G  318 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~-~~dg~i~lwd~~~~~~~~~~~~~-~~~~~------------------~~-~-------~  318 (457)
                      ...+..++|+|+| ++++++ ..++.+.++|..+++........ ...+.                  .. .       .
T Consensus       206 g~~~~~~~~spdg-~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~  284 (432)
T d1qksa2         206 ERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT  284 (432)
T ss_dssp             CSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             cCccccceECCCC-CEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccc
Confidence            4668899999999 755555 46778999999887543110000 00000                  00 0       0


Q ss_pred             cccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc
Q 012721          319 SKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  397 (457)
Q Consensus       319 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~  397 (457)
                      .......|...+....++|++..+++++. +..++|+..+ ..      .|....               .++++ ||++
T Consensus       285 ~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~-~~------~~~~~~---------------~sv~v-pDg~  341 (432)
T d1qksa2         285 DPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT-LN------PEAEIS---------------GSVAV-FDIK  341 (432)
T ss_dssp             CTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT-TC------SSHHHH---------------TCEEE-EEGG
T ss_pred             ccccccccccEEEEEEEcCCCCeEEEEecCCccceeeccc-CC------CCCCee---------------eEEEE-Eech
Confidence            00111233344555666666665655543 6666665432 11      121111               24554 8999


Q ss_pred             EEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccc
Q 012721          398 HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  446 (457)
Q Consensus       398 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~  446 (457)
                      .|++++.|+.+++|++.++    ..+..|...+..++|+|||.-...+.
T Consensus       342 ~la~~s~d~~~k~w~~~~~----~~l~~~~~~v~~~~fS~DG~~v~~S~  386 (432)
T d1qksa2         342 AMTGDGSDPEFKTLPIAEW----AGITEGQPRVVQGEFNKDGTEVWFSV  386 (432)
T ss_dssp             GCCCSSSCCCEEEECHHHH----HTCCSSCCEEEEEEECTTSSEEEEEE
T ss_pred             hhcccccCCceEecccccc----cccCCCCCcEEEeEECCCCCEEEEEE
Confidence            9999999999999998655    22345777889999999998665543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=1.7e-18  Score=153.31  Aligned_cols=245  Identities=10%  Similarity=0.109  Sum_probs=177.9

Q ss_pred             EEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCC
Q 012721           48 AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG  127 (457)
Q Consensus        48 atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~  127 (457)
                      ++++.|++|.|||+++++.                           +.++...             ..+..++|  +|+|
T Consensus         6 V~~~~~~~v~v~D~~t~~~---------------------------~~~i~~g-------------~~p~~va~--spdG   43 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKV---------------------------TATIPVG-------------SNPMGAVI--SPDG   43 (301)
T ss_dssp             EEETTTTEEEEEETTTTEE---------------------------EEEEECS-------------SSEEEEEE--CTTS
T ss_pred             EEECCCCEEEEEECCCCeE---------------------------EEEEECC-------------CCceEEEE--eCCC
Confidence            4667899999999988763                           2333322             34788999  7999


Q ss_pred             CEEE-EeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccc
Q 012721          128 SMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  206 (457)
Q Consensus       128 ~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  206 (457)
                      ++|+ +++.++.|++||+.+++....+.                                                    
T Consensus        44 ~~l~v~~~~~~~i~v~d~~t~~~~~~~~----------------------------------------------------   71 (301)
T d1l0qa2          44 TKVYVANAHSNDVSIIDTATNNVIATVP----------------------------------------------------   71 (301)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEE----------------------------------------------------
T ss_pred             CEEEEEECCCCEEEEEECCCCceeeeee----------------------------------------------------
Confidence            9775 56788999999999887654432                                                    


Q ss_pred             cccceeeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721          207 ARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (457)
Q Consensus       207 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~  284 (457)
                               .+ ..+..++|++++..+++ + .++.+.+|+.. .++....+       . +.....++.|+|++..+++
T Consensus        72 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~-~~~~~~~~~~~~dg~~~~~  132 (301)
T d1l0qa2          72 ---------AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTV-------K-TGKSPLGLALSPDGKKLYV  132 (301)
T ss_dssp             ---------CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------E-CSSSEEEEEECTTSSEEEE
T ss_pred             ---------cc-ccccccccccccccccccccccceeeecccc-cceeeeec-------c-ccccceEEEeecCCCeeee
Confidence                     12 24678999999987665 4 88999999998 55555442       2 3356788999999944556


Q ss_pred             EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCce
Q 012721          285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPV  362 (457)
Q Consensus       285 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~  362 (457)
                      ++..++.+.+|+..+.+..    ..+..              ...+..+.++|+++++++++ + +.+.+|+... .+..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  193 (301)
T d1l0qa2         133 TNNGDKTVSVINTVTKAVI----NTVSV--------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVI  193 (301)
T ss_dssp             EETTTTEEEEEETTTTEEE----EEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEE
T ss_pred             eeccccceeeeecccccee----eeccc--------------CCCceEEEeeccccceeeecccccccccccccc-eeee
Confidence            7778999999999887543    22222              24578899999999888765 4 7788888764 5555


Q ss_pred             eEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC---CCcEEEEecCCCCceeeEEecCCCcceeeeeccCC
Q 012721          363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  439 (457)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~  439 (457)
                      .....+...                ..++|++++..++.++.   ++.|++||+.++ +....+..+ ..+..++|+||+
T Consensus       194 ~~~~~~~~~----------------~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-~~~~~~~~~-~~~~~va~spdg  255 (301)
T d1l0qa2         194 DTVKVEAAP----------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVG-PDPAGIAVTPDG  255 (301)
T ss_dssp             EEEECSSEE----------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECC-SSEEEEEECTTS
T ss_pred             ecccccCCc----------------ceeeccccccccccccccceeeeeeeeecCCC-eEEEEEcCC-CCEEEEEEeCCC
Confidence            555544433                47899999998876543   468999999998 555555554 456899999999


Q ss_pred             cce
Q 012721          440 RAR  442 (457)
Q Consensus       440 ~~~  442 (457)
                      ...
T Consensus       256 ~~l  258 (301)
T d1l0qa2         256 KKV  258 (301)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=9.3e-18  Score=153.54  Aligned_cols=318  Identities=8%  Similarity=-0.015  Sum_probs=194.5

Q ss_pred             cCCceEEEEECCCCCEEEEE-----eCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           31 DVDIVSAIEFDKTGDYLAVG-----DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        31 h~~~V~~~~~s~~~~~latg-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      +..++.+++++|||+.++..     +..+.|.+||..+++.                           +.++..+.    
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~---------------------------~~~~~~~~----   67 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---------------------------LGHVNGGF----   67 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE---------------------------EEEEeCCC----
Confidence            77899999999999988764     2345789999887763                           34555554    


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEee----------CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccc
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (457)
                                ...++|  +|||++|++++          .++.|.+||..+++..............            .
T Consensus        68 ----------~~~~a~--SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~------------~  123 (373)
T d2madh_          68 ----------LPNPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD------------V  123 (373)
T ss_pred             ----------CccEEE--cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeE------------e
Confidence                      236889  79999998874          4678999999999877665433221100            0


Q ss_pred             cCCCCCceeccCCc------cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcC
Q 012721          176 EHNPPSFAHGYHLE------WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLE  247 (457)
Q Consensus       176 ~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~  247 (457)
                      ........+.++++      +..+..+.+|+......        ..+.....++.++|+++.++ +. .|+.+.+|+..
T Consensus       124 ~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~  195 (373)
T d2madh_         124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD--------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA  195 (373)
T ss_pred             ccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE--------EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence            01111223334433      12233555665543211        23334566888999987664 45 89999999988


Q ss_pred             CCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  327 (457)
                       ........... ....+.......+.+.+++  .++..+.++.+.+|+..........  .+..   ............
T Consensus       196 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~  266 (373)
T d2madh_         196 -GGAAGAGLVGA-MLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKA--PIDA---LSGGRKADTWRP  266 (373)
T ss_pred             -CceeeEEEeee-ccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEE--eecc---ccCcEEeeeecc
Confidence             44444332111 0011222233445555554  4556678899999998876532111  1110   000000000111


Q ss_pred             cceEEEEEccCCCeEE----------EEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721          328 ASISDIKFANDGQHLL----------SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (457)
Q Consensus       328 ~~v~~~~~s~~g~~l~----------s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~  396 (457)
                      .....+++++++..++          ... ++.+.+||..+ ++.+..+......                ..++|+|||
T Consensus       267 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG  329 (373)
T d2madh_         267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDG  329 (373)
T ss_pred             CcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC-CcEEEEecCCCCe----------------eEEEECCCC
Confidence            2334556666665544          222 37899999976 7777766543332                589999999


Q ss_pred             cE--EEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721          397 LH--FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       397 ~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                      +.  +++++.|+.|++||+.++ +....+..+......+++-++
T Consensus       330 ~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         330 GPDLYALSAGTEVLHIYDAGAG-DQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CEEEEEEeCCCCeEEEEECCCC-CEEEEECCCCCCCcEEEEecC
Confidence            84  468899999999999999 678888888777777766543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.1e-16  Score=143.76  Aligned_cols=295  Identities=9%  Similarity=0.043  Sum_probs=175.6

Q ss_pred             EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEecC
Q 012721           46 YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP  125 (457)
Q Consensus        46 ~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~  125 (457)
                      .+++++.|++|++|+++.....                        +. .....|.            +.+..|+|  +|
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l------------------------~~-~~~~~~~------------~~v~~la~--sp   46 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGAL------------------------TL-TQVVDVP------------GQVQPMVV--SP   46 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCE------------------------EE-EEEEECS------------SCCCCEEE--CT
T ss_pred             EEEECCCCCcEEEEEEcCCCCe------------------------EE-EEEEcCC------------CCEeEEEE--eC
Confidence            4577789999999999755421                        11 1222344            77999999  89


Q ss_pred             CCCEEEEee-CCCeEEEEEeccccee--EEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEecc
Q 012721          126 NGSMFILST-NDKTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG  202 (457)
Q Consensus       126 ~~~~l~s~s-~d~~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  202 (457)
                      ||++|++++ .|+.|++|++......  ..........++.++|++....++....             .+..+.+|+.+
T Consensus        47 DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~-------------~~~~v~~~~~~  113 (333)
T d1ri6a_          47 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY-------------NAGNVSVTRLE  113 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET-------------TTTEEEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeeccc-------------CCCceeeeccc
Confidence            999886655 5899999999865432  2222223333444555433222222111             13367777766


Q ss_pred             CccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc
Q 012721          203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (457)
Q Consensus       203 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~  280 (457)
                      ..........  ..+...+.++.++|++++++.+  .+..|.+|+..............  ...........++|++++.
T Consensus       114 ~~~~~~~~~~--~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~g~~p~~i~~~~~~~  189 (333)
T d1ri6a_         114 DGLPVGVVDV--VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE--VTTVEGAGPRHMVFHPNEQ  189 (333)
T ss_dssp             TTEEEEEEEE--ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--EECSTTCCEEEEEECTTSS
T ss_pred             cccceecccc--cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee--eeeecCCCccEEEEeccce
Confidence            5443333322  3566678899999999988876  77889999987443332211100  0122345568899999983


Q ss_pred             cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCC
Q 012721          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMD  358 (457)
Q Consensus       281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~  358 (457)
                      ..+.+....+...+|+................   .+.    ..........+++++++++++... . +.+.+|++...
T Consensus       190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~  262 (333)
T d1ri6a_         190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDM---MPE----NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED  262 (333)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEEC---SCT----TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             eEEeeccccCceEEEeecccccceeeeeeeee---eec----CCCccccceeEEEecccCceeeecccCCeEEEEEEcCC
Confidence            34445557778888887553211110001000   000    011234567789999999888654 3 89999998753


Q ss_pred             CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEec--CCC
Q 012721          359 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSH--GVG  416 (457)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~--~~~  416 (457)
                      +.............             ....++|+|||++|++++. ++.|.+|++  .+|
T Consensus       263 ~~~~~~~~~~~~~~-------------~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG  310 (333)
T d1ri6a_         263 GSVLSKEGFQPTET-------------QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG  310 (333)
T ss_dssp             SCCEEEEEEEECSS-------------SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred             CCEEEEEEEeCCCC-------------CeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCC
Confidence            33333222111110             0157999999999877654 688999955  555

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=2.4e-17  Score=149.55  Aligned_cols=317  Identities=9%  Similarity=-0.002  Sum_probs=174.0

Q ss_pred             ceEEEEECCCCCEEEEEe-----CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721           34 IVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  108 (457)
                      ++.-.+.+|||+.+++..     .++.|.+||..+++.                           +.++..+.       
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~---------------------------~~~~~~g~-------   48 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------------IGMIDGGF-------   48 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------------EEEEEECS-------
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE---------------------------EEEEECCC-------
Confidence            344446789999887653     456799999987763                           34444444       


Q ss_pred             cccccCcEEEEEEEecCCCCEEEEee----------CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCC
Q 012721          109 SLEIEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (457)
Q Consensus       109 ~~~~~~~V~~v~~~~s~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (457)
                             +..++|  +|||++|++++          .|+.|++||..+++....+.......            ......
T Consensus        49 -------~~~~a~--SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~------------~~~~~~  107 (355)
T d2bbkh_          49 -------LPNPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR------------FLVGTY  107 (355)
T ss_dssp             -------SCEEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC------------CCBSCC
T ss_pred             -------CCceEE--cCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce------------eecCCC
Confidence                   346899  89999887643          47899999999998776654432210            000000


Q ss_pred             CCCceeccCCcc------ccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEeCCCeEEEEEcCCCcc
Q 012721          179 PPSFAHGYHLEW------TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSADDLRINLWNLEISDQ  251 (457)
Q Consensus       179 ~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~d~~i~iwd~~~~~~  251 (457)
                      .....+.+++.+      .....+.+|+....      +.. ......-....+.. ....++.+.|+...++...... 
T Consensus       108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~-  179 (355)
T d2bbkh_         108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK------AFK-RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG-  179 (355)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTT------EEE-EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS-
T ss_pred             CceEEEecCCCeeEEecCCCCceeeeeecCCC------cEe-eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCC-
Confidence            111223333331      11224455554311      000 00000000000000 1111222234444333333111 


Q ss_pred             eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  331 (457)
                      ......... ....+...+....+.+++ ..++.++.++.+.+|++..++....  .....+   ...............
T Consensus       180 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~---~~~~~~~~~~p~~~~  252 (355)
T d2bbkh_         180 TPEITHTEV-FHPEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFL--PAVEAL---TEAERADGWRPGGWQ  252 (355)
T ss_dssp             CCEEEECCC-CSCTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEEC--CCEESS---CHHHHHTTEEECSSS
T ss_pred             eEEEEeccc-ccceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEE--eccCCc---ccceEeeeeeccceE
Confidence            111111110 012233344556777777 7888889999999999988653211  011000   000000000112345


Q ss_pred             EEEEccCCCeEEEEec-----------CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc--E
Q 012721          332 DIKFANDGQHLLSRDY-----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--H  398 (457)
Q Consensus       332 ~~~~s~~g~~l~s~~~-----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~  398 (457)
                      .+++++++..++....           ..|.+||..+ ++.+..+..+...                .+++|+|||+  +
T Consensus       253 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l  315 (355)
T d2bbkh_         253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLL  315 (355)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEE
T ss_pred             EEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecCCCCE----------------EEEEEcCCCCeEE
Confidence            5889999988875421           4699999986 7777777654432                5899999997  4


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721          399 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       399 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                      +++++.|+.|++||++++ +.+..+.++......+.+.++
T Consensus       316 ~v~~~~d~~i~v~D~~tg-~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         316 YALSTGDKTLYIHDAESG-EELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEEETTTTEEEEEETTTC-CEEEEECCCCSSCCEEECCCC
T ss_pred             EEEECCCCEEEEEECCCC-CEEEEEeCcCCCccEEEeCCC
Confidence            567778999999999999 667778777666666655544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=8.1e-16  Score=137.91  Aligned_cols=231  Identities=13%  Similarity=0.060  Sum_probs=152.5

Q ss_pred             CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCcccc
Q 012721          128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  207 (457)
Q Consensus       128 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  207 (457)
                      +++++++.|++|++||+.+++....+..                                                    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~----------------------------------------------------   29 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITI----------------------------------------------------   29 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC----------------------------------------------------
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEEC----------------------------------------------------
Confidence            4799999999999999999877665432                                                    


Q ss_pred             ccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEE
Q 012721          208 RCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  285 (457)
Q Consensus       208 ~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~  285 (457)
                             ..+...+.+++|+|||++++ ++ .++.|.+||+. .++....+....  ...+...+..++|+|++ +++++
T Consensus        30 -------~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~-t~~~~~~~~~~~--~~~~~~~~~~v~~s~dg-~~l~~   98 (337)
T d1pbyb_          30 -------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLST--PEERVKSLFGAALSPDG-KTLAI   98 (337)
T ss_dssp             -------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECCB--TTEEEECTTCEEECTTS-SEEEE
T ss_pred             -------CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECC-CCcEEEEEecCC--CcccccceeeEEEcCCC-cEEEE
Confidence                   23344577899999999874 56 89999999999 555555433221  11223345578999999 77776


Q ss_pred             Ec------------cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEE
Q 012721          286 SS------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  353 (457)
Q Consensus       286 ~~------------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~w  353 (457)
                      +.            .++.+.+||..+++..    ..+..              ...+..++|+|+|+++++++ +.+.+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~-~~~~~~  159 (337)
T d1pbyb_          99 YESPVRLELTHFEVQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGLG-RDLHVM  159 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEES-SSEEEE
T ss_pred             eecCCcceeeeccccccceeeccccCCeEE----Eeccc--------------cCCceEEEEcCCCCEEEEEc-CCccee
Confidence            65            3567888888887543    22222              24577899999999999876 557788


Q ss_pred             eccCCCCceeEeeeccccccccc-------------------------------------------cccC--------CC
Q 012721          354 DIRMDSTPVATFKIHEHLRPKLC-------------------------------------------DLYN--------ND  382 (457)
Q Consensus       354 d~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~--------~~  382 (457)
                      |... ++....+..+........                                           +...        ..
T Consensus       160 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         160 DPEA-GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             ETTT-TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeec-CcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            8764 444433322211100000                                           0000        00


Q ss_pred             CccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721          383 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       383 ~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      .-.....+.++|++.+++.+  ++.|++||+.++ +....+. +...+.+++|+||+.....|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dG~~l~v~  297 (337)
T d1pbyb_         239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVP-LPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEE-CSSCCCEEEECTTSCEEEEE
T ss_pred             CCcceEEEEecccceEEEEc--cccEEEEECCCC-cEEEEEc-CCCCEEEEEECCCCCEEEEE
Confidence            00012456778888887665  478999999998 5555543 56778999999999876653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=3.7e-14  Score=126.80  Aligned_cols=259  Identities=11%  Similarity=0.119  Sum_probs=158.5

Q ss_pred             ccccCCceEEEEECCCCCEEEEE-eCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721           28 ELQDVDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (457)
Q Consensus        28 ~~~h~~~V~~~~~s~~~~~latg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  106 (457)
                      .++|.+.|..|+|||||++|+++ ..|+.|++|++......                       .+..... .+.     
T Consensus        32 ~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~-----------------------~~~~~~~-~~~-----   82 (333)
T d1ri6a_          32 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-----------------------LTFAAES-ALP-----   82 (333)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-----------------------EEEEEEE-ECS-----
T ss_pred             EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc-----------------------EEEeeec-ccC-----
Confidence            34588999999999999998655 45899999999865431                       0011111 111     


Q ss_pred             cccccccCcEEEEEEEecCCCCEEEEeeC-CCeEEEEEecccceeEEEeec-CCCceeeeeeccccccccccCCCCCcee
Q 012721          107 LKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                             ..+..++|  +++|++|++++. ++.|.+|+............. ....+.++.                  +
T Consensus        83 -------~~p~~l~~--spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~------------------~  135 (333)
T d1ri6a_          83 -------GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN------------------I  135 (333)
T ss_dssp             -------SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE------------------E
T ss_pred             -------CCceEEEE--cCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEE------------------e
Confidence                   44678999  899999998874 778999998876554443322 112222222                  3


Q ss_pred             ccCCcc-----ccccceEEEeccCccccccc--eeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceee-
Q 012721          185 GYHLEW-----TENMATKIANVGNSVHARCQ--KVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN-  254 (457)
Q Consensus       185 ~~~~~~-----~~~~~i~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~-  254 (457)
                      .+++..     .....+.+|+..........  .............++|++++..++..  ..+...+|+......... 
T Consensus       136 s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  215 (333)
T d1ri6a_         136 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC  215 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             eecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee
Confidence            333331     11235777776543222111  11113445567889999999888765  778888888763332221 


Q ss_pred             --eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721          255 --IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (457)
Q Consensus       255 --~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  332 (457)
                        .+...+. ..........+++++++..+++.+..++.+.+|++.......    ....          .......+..
T Consensus       216 ~~~~~~~~~-~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~p~~  280 (333)
T d1ri6a_         216 VQTLDMMPE-NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL----SKEG----------FQPTETQPRG  280 (333)
T ss_dssp             EEEEECSCT-TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE----EEEE----------EEECSSSCCC
T ss_pred             eeeeeeeec-CCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE----EEEE----------EeCCCCCeeE
Confidence              1111111 112335567889999994456666788999999987653221    1111          0112345678


Q ss_pred             EEEccCCCeEEEEe-c-CcEEEEeccC
Q 012721          333 IKFANDGQHLLSRD-Y-MNLKLWDIRM  357 (457)
Q Consensus       333 ~~~s~~g~~l~s~~-~-~~i~~wd~~~  357 (457)
                      ++|+|||++|++++ + +.|++|+++.
T Consensus       281 ~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         281 FNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            99999999988764 4 8999997754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.61  E-value=8.8e-15  Score=131.51  Aligned_cols=239  Identities=9%  Similarity=0.012  Sum_probs=143.7

Q ss_pred             cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccC
Q 012721          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (457)
Q Consensus       124 s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  203 (457)
                      ++++++|++++.|++|.+||+.+++....+.                                                 
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~-------------------------------------------------   35 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCV-------------------------------------------------   35 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEE-------------------------------------------------
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEEE-------------------------------------------------
Confidence            6899999999999999999999987765543                                                 


Q ss_pred             ccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCcc
Q 012721          204 SVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  281 (457)
Q Consensus       204 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~  281 (457)
                                 ..+...+.+++|+|||++++ ++ .++.|++||+. .++....+.... ....+...+..++|+|+| +
T Consensus        36 -----------~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~-t~~~~~~~~~~~-~~~~~~~~~~~v~~s~DG-~  101 (346)
T d1jmxb_          36 -----------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKNTFHANLSS-VPGEVGRSMYSFAISPDG-K  101 (346)
T ss_dssp             -----------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEESCC-STTEEEECSSCEEECTTS-S
T ss_pred             -----------cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc-cCeeeeeecccc-cccccCCceEEEEEecCC-C
Confidence                       23444577999999999875 45 89999999999 555554433221 111222345678999999 7


Q ss_pred             EEEEEc------------cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCc
Q 012721          282 LLAYSS------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  349 (457)
Q Consensus       282 ~l~~~~------------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~  349 (457)
                      ++++++            .++.+.+||..+++..    ..+..           ......+..+.+++++++++++  +.
T Consensus       102 ~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~--~~  164 (346)
T d1jmxb_         102 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRT-----------FPMPRQVYLMRAADDGSLYVAG--PD  164 (346)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEE-----------EECCSSCCCEEECTTSCEEEES--SS
T ss_pred             EEEEEecCCcceeeeeccCcceEEEEecccceee----eEEEe-----------eeccCceEEEEecCCCEEEEeC--Cc
Confidence            776664            4677888888876433    11111           0011345566777777766654  56


Q ss_pred             EEEEeccCCCCceeEeeeccccccccccc-----cC---CCCcccc--ceEEEcCCCcEEEEEeCCCcEEEEecCCCCce
Q 012721          350 LKLWDIRMDSTPVATFKIHEHLRPKLCDL-----YN---NDSIFDK--FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  419 (457)
Q Consensus       350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~v--~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~  419 (457)
                      +.+|++.+ ++.+..+..+..........     +.   ......+  ....+.+....++++..++.+.+|++.++...
T Consensus       165 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d1jmxb_         165 IYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH  243 (346)
T ss_dssp             EEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred             ceEEEccC-CCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE
Confidence            88999875 67666665544322110000     00   0000000  01112223344455666777888998888555


Q ss_pred             eeEEecCCCcceeeeeccCCccee
Q 012721          420 GITVEAGKNENRKPILQAAPRARR  443 (457)
Q Consensus       420 ~~~~~~~~~~v~~~~~~p~~~~~~  443 (457)
                      ......+...+..+.++|++....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~  267 (346)
T d1jmxb_         244 TQEFADLTELYFTGLRSPKDPNQI  267 (346)
T ss_dssp             EEEEEECSSCEEEEEECSSCTTEE
T ss_pred             EEEeecccceeEEEEEeCCCCEEE
Confidence            555566666666666666654443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=1.2e-13  Score=125.49  Aligned_cols=79  Identities=11%  Similarity=0.090  Sum_probs=56.5

Q ss_pred             EEEEEccCCCeEEEEe-c---------CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-E-
Q 012721          331 SDIKFANDGQHLLSRD-Y---------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-H-  398 (457)
Q Consensus       331 ~~~~~s~~g~~l~s~~-~---------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~-  398 (457)
                      ..+++++++..++... +         ..|.+||..+ ++.+..+......                ..++|+|||+ + 
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l  329 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASDN  329 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCEE
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecCCCce----------------eEEEECCCCCEEE
Confidence            4578888888776432 1         3588999986 6777666544332                5899999997 3 


Q ss_pred             EEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721          399 FATGSYSNLLRIFSHGVGSAGGITVEAGK  427 (457)
Q Consensus       399 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  427 (457)
                      ++++..|+.|++||..++ +.+..++...
T Consensus       330 y~s~~~~~~v~v~D~~tg-k~~~~i~~g~  357 (368)
T d1mdah_         330 YANSAGTEVLDIYDAASD-QDQSSVELDK  357 (368)
T ss_dssp             EEEETTTTEEEEEESSSC-EEEEECCCCS
T ss_pred             EEEeCCCCeEEEEECCCC-CEEEEEECCC
Confidence            456777899999999999 5666665433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=1.4e-13  Score=124.34  Aligned_cols=262  Identities=12%  Similarity=0.109  Sum_probs=149.8

Q ss_pred             CceEEEEECCCCCEEEEE----------eCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCc
Q 012721           33 DIVSAIEFDKTGDYLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP  102 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  102 (457)
                      +.+..++|||||++|+++          +.++.|++||+.+++..                           ..+..+..
T Consensus        47 g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~---------------------------~~~~~~~~   99 (355)
T d2bbkh_          47 GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------------------------ADIELPDA   99 (355)
T ss_dssp             CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTC
T ss_pred             CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEE---------------------------EEEecCCc
Confidence            445579999999988764          34789999999887642                           22222220


Q ss_pred             cccccccccccCcEEEEEEEecCCCCEEEEee--CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCC
Q 012721          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (457)
Q Consensus       103 ~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (457)
                      .     ..........+.|  ++++..++.++  .+..+.+|+..+++....+.......    .+...        ...
T Consensus       100 ~-----~~~~~~~~~~~~~--s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~~  160 (355)
T d2bbkh_         100 P-----RFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH----IFPTA--------PDT  160 (355)
T ss_dssp             C-----CCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE----EEEEE--------TTE
T ss_pred             c-----eeecCCCCceEEE--ecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce----EeecC--------Ccc
Confidence            0     0000122345788  78998887764  56789999999887766554322110    00000        000


Q ss_pred             CceeccCCcc-----ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceee
Q 012721          181 SFAHGYHLEW-----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN  254 (457)
Q Consensus       181 ~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~  254 (457)
                      ...+..++..     .....+.+.+....         ...+...+....+.+++..++.+ .++.+++|++.. +....
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~  230 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVF---------HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS-GDAKF  230 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCC---------SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT-SSCEE
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccc---------cceecceeeeccccCCCCeEEEecCCCeEEEEecCC-CcEEE
Confidence            1112222221     01112222222211         12344455666777778888887 999999999983 32221


Q ss_pred             e--eecCCC---cccCCCCceEEEEEecCCccEEEEEccC----------CeEEEEEccCCeeeccccccccccccccCc
Q 012721          255 I--VDMKPS---NMDDLTEVITSAEFHPIYCNLLAYSSSR----------GFVRLVDMRQSALCDHSARILRDAAESHGS  319 (457)
Q Consensus       255 ~--~~~~~~---~~~~~~~~i~~v~~~p~~~~~l~~~~~d----------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      +  ......   ...........+++++++ ..++....+          ..|.+||..+++..    ..+..       
T Consensus       231 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~----~~~~~-------  298 (355)
T d2bbkh_         231 LPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL----AKFEM-------  298 (355)
T ss_dssp             CCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----EEEEE-------
T ss_pred             EeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCceeecCCCCeEEEEeCCCCcEE----EEecC-------
Confidence            1  100000   000011223457889998 666554432          46999999987643    22222       


Q ss_pred             ccceeccccceEEEEEccCCCe--EEEEe-cCcEEEEeccCCCCceeEeeeccc
Q 012721          320 KSFFTEIIASISDIKFANDGQH--LLSRD-YMNLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       320 ~~~~~~h~~~v~~~~~s~~g~~--l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                             ...+.+++|+|||+.  ++++. ++.|++||+++ ++.+.++..+..
T Consensus       299 -------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t-g~~~~~i~~~G~  344 (355)
T d2bbkh_         299 -------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEELRSVNQLGH  344 (355)
T ss_dssp             -------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCEEEEECCCCS
T ss_pred             -------CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC-CCEEEEEeCcCC
Confidence                   245789999999984  34454 49999999986 888888875543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.51  E-value=1.5e-11  Score=111.42  Aligned_cols=285  Identities=7%  Similarity=-0.092  Sum_probs=163.8

Q ss_pred             CcEEEEEEEecCCCCEEEEe-----eCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          114 EKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~-----s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                      +++..+++  +|+|+.++..     +.++.|.+||..+++....+.....   ..++|++ +|+.+...........   
T Consensus        21 ~p~~~~a~--spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~---~~~a~Sp-DG~~l~va~~~~~~~~---   91 (373)
T d2madh_          21 GPTNDEAP--GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL---PNPVAAH-SGSEFALASTSFSRIA---   91 (373)
T ss_pred             CCcccccc--CCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC---ccEEEcC-CCCEEEEEeecCCccc---
Confidence            78899999  7999988764     2446799999999988776543322   1345554 3322222110000000   


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCe-------eEEEeCCCCCEEEEe---CCCeEEEEEcCCCcceeeeeec
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNI-------NSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDM  258 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~  258 (457)
                      ....++.+.+||..+...   +... ..+....       ..+.|+++++.++..   .++.+.+|+.. ..+...    
T Consensus        92 ~~~~~~~v~v~D~~t~~~---~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~-~~~~~~----  162 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLP---IADI-ELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG-GSSDDQ----  162 (373)
T ss_pred             ccccceEEEEEECCCCcE---EEEE-ecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeecc-CCeEEE----
Confidence            001234789999875432   2222 2222222       346777777766553   45677888776 333222    


Q ss_pred             CCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (457)
Q Consensus       259 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  338 (457)
                             +.....++.++|++...+++.+.|+.+.+||...++...........           .++......+.++++
T Consensus       163 -------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  224 (373)
T d2madh_         163 -------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT-----------AAQNLLTQPAQANKS  224 (373)
T ss_pred             -------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc-----------cCccceeeeEEECCC
Confidence                   33456788999999567788999999999999887544211111110           111223455667777


Q ss_pred             CCeEEEEecCcEEEEeccCCCCcee--EeeeccccccccccccCCCCccccceEEEcCCCcEE----------EEEeCCC
Q 012721          339 GQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF----------ATGSYSN  406 (457)
Q Consensus       339 g~~l~s~~~~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l----------~s~~~dg  406 (457)
                      +.+++.+.++.+.+|+... .....  ....+......  ....+..   ...+++++++..+          ++...++
T Consensus       225 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  298 (373)
T d2madh_         225 GRIVWPVYSGKILQADISA-AGATNKAPIDALSGGRKA--DTWRPGG---WQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             ceEEEecCCceEEEEEcCC-CeEEEEEeeccccCcEEe--eeeccCc---ceeeEEecCCCeEEEecCCCceEEeecCCC
Confidence            7777777778999998864 32221  11111110000  0000000   0245566665544          4556677


Q ss_pred             cEEEEecCCCCceeeEEecCCCcceeeeeccCCcce
Q 012721          407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR  442 (457)
Q Consensus       407 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  442 (457)
                      .+.+||..++ +....+. +...+..++|+||+...
T Consensus       299 ~v~~~d~~t~-~~~~~~~-~~~~~~~~a~spDG~~~  332 (373)
T d2madh_         299 EVTSVTGLVG-QTSSQIS-LGHDVDAISVAQDGGPD  332 (373)
T ss_pred             eEEEEECCCC-cEEEEec-CCCCeeEEEECCCCCEE
Confidence            8999999999 4445443 56778899999999754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.42  E-value=2.2e-11  Score=114.18  Aligned_cols=81  Identities=9%  Similarity=0.105  Sum_probs=64.3

Q ss_pred             cccCCceEEEEECCCCCEEEEEeC---------CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc
Q 012721           29 LQDVDIVSAIEFDKTGDYLAVGDR---------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS   99 (457)
Q Consensus        29 ~~h~~~V~~~~~s~~~~~latg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (457)
                      ..|...|.++.|||||++||.++.         ++.+.|||+.+++.                            ..+..
T Consensus        58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~----------------------------~~l~~  109 (470)
T d2bgra1          58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----------------------------ITEER  109 (470)
T ss_dssp             TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----------------------------CCSSC
T ss_pred             hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc----------------------------ccccc
Confidence            346778999999999999998753         56788999988764                            24555


Q ss_pred             CCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEE
Q 012721          100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI  152 (457)
Q Consensus       100 h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~  152 (457)
                      |.            +.+..+.|  ||||+.+|.. .++.+.+|+..++.....
T Consensus       110 ~~------------~~~~~~~~--SPDG~~ia~~-~~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1         110 IP------------NNTQWVTW--SPVGHKLAYV-WNNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             CC------------TTEEEEEE--CSSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred             CC------------cccccccc--ccCcceeeEe-ecccceEEECCCCceeee
Confidence            65            77999999  8999999985 467899999988865543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=1.9e-11  Score=114.60  Aligned_cols=157  Identities=13%  Similarity=0.206  Sum_probs=106.1

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCcccee--eeeccCCcccccccccccc
Q 012721           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK--TEFQSHEPEFDYLKSLEIE  113 (457)
Q Consensus        36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~~~~~~~~~~~  113 (457)
                      ..+.|.++++++..  .++.|.+||+.+++..                        .++  ..+..|.            
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~------------------------~~~~~~~~~~~~------------   61 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSS------------------------VFLENSTFDEFG------------   61 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEE------------------------EEECTTTTTTSS------------
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEE------------------------EEEchhhhhhcc------------
Confidence            45889999988764  4778999999988742                        010  1234444            


Q ss_pred             CcEEEEEEEecCCCCEEEEeeC---------CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          114 EKINRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                      ..|.++.|  ||||++|+.++.         ++.+.+||+.+++...+                                
T Consensus        62 ~~i~~~~~--SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l--------------------------------  107 (470)
T d2bgra1          62 HSINDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE--------------------------------  107 (470)
T ss_dssp             SCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS--------------------------------
T ss_pred             CccceeEE--CCCCCEEEEEECCcceeeeccCceEEEEECCCCccccc--------------------------------
Confidence            67999999  899999998753         45666777776643321                                


Q ss_pred             ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCC--c
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS--N  262 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~  262 (457)
                                                    ..+...+..+.|+|||+.+|...++.+++|+.. .+...++......  .
T Consensus       108 ------------------------------~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~-~g~~~~~t~~~~~~~~  156 (470)
T d2bgra1         108 ------------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRITWTGKEDII  156 (470)
T ss_dssp             ------------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECCSCCBTTTE
T ss_pred             ------------------------------ccCCccccccccccCcceeeEeecccceEEECC-CCceeeeeeccCCCcc
Confidence                                          467778999999999999999988899999988 4544433211000  0


Q ss_pred             c---------cCCCCceEEEEEecCCccEEEEEccCCe-EEEEE
Q 012721          263 M---------DDLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVD  296 (457)
Q Consensus       263 ~---------~~~~~~i~~v~~~p~~~~~l~~~~~dg~-i~lwd  296 (457)
                      +         ....+....+.|+||| +.|++...|.+ +..|+
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEE
T ss_pred             cccccceeeeeeecCCccccEECCCC-CccceeEecCCcCceEE
Confidence            0         0122334567899999 88888765433 44443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.35  E-value=1.2e-08  Score=91.55  Aligned_cols=284  Identities=8%  Similarity=-0.028  Sum_probs=146.7

Q ss_pred             CcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccc-ceeEEEeecCCCceeeeeeccccccccccCC---CCCceeccCCc
Q 012721          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHN---PPSFAHGYHLE  189 (457)
Q Consensus       114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  189 (457)
                      ..+..|+|  ++++++|+++.. +.+..|.+... ..............+.+.+.+....++....   ...+...+...
T Consensus        40 ~~~s~la~--s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          40 EPISWMTF--DHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             CCCSEEEE--CTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCEEEE--cCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            44667899  789998888765 45778877643 3333322223333444554444332211111   11111111000


Q ss_pred             cccccceEEEeccCccc-cccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721          190 WTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (457)
Q Consensus       190 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  266 (457)
                        .+....+..+..... ..............+.++.|+|+|++++++  ....|.+|+....+.....-..   .....
T Consensus       117 --~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~---~~~~~  191 (365)
T d1jofa_         117 --FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV---DAPDP  191 (365)
T ss_dssp             --SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE---ECSST
T ss_pred             --CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce---eecCC
Confidence              011222222221100 011111112234457899999999988887  5678999987644433222110   01223


Q ss_pred             CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc-ccccccc-cccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      ......++|+|++..+.++...+++|.+|++...+.... ....... ....+........+......+.++|+|++|++
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence            456889999999933446666789999999876542210 0000000 00000001111223345678899999999987


Q ss_pred             Ee--c-----CcEEEEeccCCCCceeEeeecccc-ccccccccCCCCccccceEEEcC-CCcEEEEEe-CCCcEEEEecC
Q 012721          345 RD--Y-----MNLKLWDIRMDSTPVATFKIHEHL-RPKLCDLYNNDSIFDKFECSVSG-DGLHFATGS-YSNLLRIFSHG  414 (457)
Q Consensus       345 ~~--~-----~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~-~dg~i~iw~~~  414 (457)
                      +.  +     ..|..|++...+............ ....           -..++++| +|++|+.+. .++.|.+|+++
T Consensus       272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~-----------p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH-----------SNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT-----------CCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCC-----------ccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            53  1     337777776433322221111100 0000           04799998 799887664 67899999986


Q ss_pred             CC
Q 012721          415 VG  416 (457)
Q Consensus       415 ~~  416 (457)
                      ..
T Consensus       341 ~~  342 (365)
T d1jofa_         341 DE  342 (365)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.9e-09  Score=92.46  Aligned_cols=180  Identities=16%  Similarity=0.115  Sum_probs=106.2

Q ss_pred             CCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCe--
Q 012721          216 AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF--  291 (457)
Q Consensus       216 ~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~--  291 (457)
                      .+........|+|+|+.++..  .++...++...........       ............+++++...+++...+|.  
T Consensus        80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (269)
T d2hqsa1          80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  152 (269)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-------CCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             eeecccccceecCCCCeeeEeeecCCccceeeccccccccee-------eeeccccccccccccccccceecccccCCce
Confidence            345567788999999998875  4444333333312221111       22233444566677777345555555664  


Q ss_pred             EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeEeeecc
Q 012721          292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHE  369 (457)
Q Consensus       292 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~  369 (457)
                      |.+.++..+...    ..              ..+........|+|+++.++..+ + +...+|............. ..
T Consensus       153 i~~~~~~~~~~~----~~--------------~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~  213 (269)
T d2hqsa1         153 VYKVNINGGAPQ----RI--------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-ST  213 (269)
T ss_dssp             EEEEETTSSCCE----EC--------------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CS
T ss_pred             Eeeeecccccce----ee--------------ecccccccccccccccceeEEEeecCCceeeeEeecccccceEee-cC
Confidence            444455443211    11              11234567789999999998654 3 5555555543233333332 22


Q ss_pred             ccccccccccCCCCccccceEEEcCCCcEEEEEeCC---CcEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721          370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       370 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                      ...               ....|||||+.|+..+..   ..|+++++..+ . ...+....+.+...+|+|-
T Consensus       214 ~~~---------------~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~-~-~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         214 FLD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-F-KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             SSC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSC-C-EEECCCSSSEEEEEEECCC
T ss_pred             ccc---------------cceEECCCCCEEEEEEcCCCCcEEEEEECCCC-C-EEEEeCCCCcEEeEEeCCC
Confidence            221               468999999999865543   46899999866 3 3445566777888899984

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.31  E-value=6.2e-11  Score=107.16  Aligned_cols=104  Identities=8%  Similarity=-0.021  Sum_probs=71.5

Q ss_pred             eEEEEEccCCCeEEEEe--cCcEEEEeccCCCC-------ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEE
Q 012721          330 ISDIKFANDGQHLLSRD--YMNLKLWDIRMDST-------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  400 (457)
Q Consensus       330 v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  400 (457)
                      ...+.++|||+|+++++  +++|.+||++...+       ....+.++..            .-......+|.++|..+.
T Consensus       260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~------------~glgplh~~fd~~g~~yt  327 (441)
T d1qnia2         260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPE------------LGLGPLHTTFDGRGNAYT  327 (441)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCB------------CCSCEEEEEECSSSEEEE
T ss_pred             ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecc------------cccCcccceecCCceEEE
Confidence            46799999999998764  39999999864111       0111111111            111124678999999888


Q ss_pred             EEeCCCcEEEEecCC---------CCceeeEE-----ecCCCcceeeeeccCCcceecc
Q 012721          401 TGSYSNLLRIFSHGV---------GSAGGITV-----EAGKNENRKPILQAAPRARRSS  445 (457)
Q Consensus       401 s~~~dg~i~iw~~~~---------~~~~~~~~-----~~~~~~v~~~~~~p~~~~~~~~  445 (457)
                      +...|..|..|++..         .......+     .+|...+.+..++|||.-..++
T Consensus       328 s~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         328 TLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             cccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            999999999999742         11223333     5889999999999999888873

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=1e-10  Score=105.88  Aligned_cols=262  Identities=8%  Similarity=-0.005  Sum_probs=144.4

Q ss_pred             EEEEECCCCCEEEEEe----------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721           36 SAIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (457)
Q Consensus        36 ~~~~~s~~~~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  105 (457)
                      ..++|+|||+.|++++          .|+.|.+||..+++.                           +..+..+...  
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~---------------------------~~~i~~p~~~--  118 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---------------------------IADIELPDAP--  118 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---------------------------EEEEEETTSC--
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE---------------------------eeeecCCccc--
Confidence            4689999999988754          467899999988764                           2222222210  


Q ss_pred             ccccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721          106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (457)
Q Consensus       106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (457)
                         ..........++|  ++||++++++. .++.+.+||+.+++............+.    .......+        . 
T Consensus       119 ---~~~~g~~p~~~a~--SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~v--------~-  180 (368)
T d1mdah_         119 ---RFSVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH----PGAAATHY--------L-  180 (368)
T ss_dssp             ---SCCBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE----EEETTEEE--------C-
T ss_pred             ---eecccCCccceEE--CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc----cCCCceEE--------E-
Confidence               0000012345888  89999998876 5799999999999887765543221100    00000000        0 


Q ss_pred             ccCCccccccceEEEeccCccccccc--eeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCc
Q 012721          185 GYHLEWTENMATKIANVGNSVHARCQ--KVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN  262 (457)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  262 (457)
                           +..++.+.+++..........  ......+...+....+.+++..+.+ .++.++++++. ..............
T Consensus       181 -----~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~-~~~~~~~~~~~~~~  253 (368)
T d1mdah_         181 -----GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIP-AAGATMKAAIDGNE  253 (368)
T ss_dssp             -----CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECC-SSCCEEECCCCSSC
T ss_pred             -----EcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-cCCCEEEEeec-CCceEEEeeccccc
Confidence                 112334444444322111100  0111344455566777777755444 34556666665 22222111000000


Q ss_pred             -----ccCCCCceEEEEEecCCccEEEEEc-cC--------CeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721          263 -----MDDLTEVITSAEFHPIYCNLLAYSS-SR--------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (457)
Q Consensus       263 -----~~~~~~~i~~v~~~p~~~~~l~~~~-~d--------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  328 (457)
                           ..........++++|++ ..++... .+        ..|.+||..+++..    ..+..              ..
T Consensus       254 ~~~~~~~~~~~g~~~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~----~~~~~--------------~~  314 (368)
T d1mdah_         254 SGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN--------------GH  314 (368)
T ss_dssp             THHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE--------------EE
T ss_pred             ceeeeeeecCCCceeEEEcCCC-CEEEEEecCCCceeecCCceEEEEECCCCcEe----EEecC--------------CC
Confidence                 00011122357788988 5544432 21        35889999988644    22222              24


Q ss_pred             ceEEEEEccCCCe-EE-EEe-cCcEEEEeccCCCCceeEeeecccc
Q 012721          329 SISDIKFANDGQH-LL-SRD-YMNLKLWDIRMDSTPVATFKIHEHL  371 (457)
Q Consensus       329 ~v~~~~~s~~g~~-l~-s~~-~~~i~~wd~~~~~~~~~~~~~~~~~  371 (457)
                      .+..++|+|||+. |+ ++. ++.|++||..+ ++.+..+.....+
T Consensus       315 ~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t-gk~~~~i~~g~~P  359 (368)
T d1mdah_         315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP  359 (368)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred             ceeEEEECCCCCEEEEEEeCCCCeEEEEECCC-CCEEEEEECCCCC
Confidence            6889999999974 33 444 49999999986 8888888755443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.27  E-value=3.7e-09  Score=92.35  Aligned_cols=240  Identities=10%  Similarity=0.092  Sum_probs=148.4

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  112 (457)
                      ..+..++++|||+++++...+++|..|+.+....                             .+....           
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-----------------------------~~~~~~-----------   67 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------------------------IHATVE-----------   67 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------------------------EEEECS-----------
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-----------------------------EEEcCC-----------
Confidence            3678999999999999999899887777443221                             222233           


Q ss_pred             cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (457)
Q Consensus       113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (457)
                       ..+.+++|  +++|+++++...++.+..|+............                                     
T Consensus        68 -~~~~gla~--~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  107 (302)
T d2p4oa1          68 -GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETLL-------------------------------------  107 (302)
T ss_dssp             -SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEEE-------------------------------------
T ss_pred             -CCcceEEE--cCCCCeEEEecCCceEEEEEecccccceeecc-------------------------------------
Confidence             56899999  78999888888888888887655322111000                                     


Q ss_pred             ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeec--CCCcccCCCCc
Q 012721          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLTEV  269 (457)
Q Consensus       193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~  269 (457)
                             +              .......+.+.+.++++++++. .++.+..+|.......+.....  ...........
T Consensus       108 -------~--------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (302)
T d2p4oa1         108 -------T--------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  166 (302)
T ss_dssp             -------E--------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             -------c--------------cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccc
Confidence                   0              1233457889999999888887 8889988888732222211110  00111222234


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~  348 (457)
                      ...+.+..+  .++++.+..+.|..++......... ...+.              .......++++++|++.++... +
T Consensus       167 ~ngi~~~~~--~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~--------------~~~~pdgia~d~dG~l~va~~~~~  229 (302)
T d2p4oa1         167 ANGLKRFGN--FLYVSNTEKMLLLRIPVDSTDKPGE-PEIFV--------------EQTNIDDFAFDVEGNLYGATHIYN  229 (302)
T ss_dssp             EEEEEEETT--EEEEEETTTTEEEEEEBCTTSCBCC-CEEEE--------------ESCCCSSEEEBTTCCEEEECBTTC
T ss_pred             cccccccCC--ceeeecCCCCeEEeccccccccccc-ccccc--------------CCCCCcceEECCCCCEEEEEcCCC
Confidence            566666543  5777778889999888776432211 01111              1234567999999997777654 8


Q ss_pred             cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE---cCCCcEEEEEeCC
Q 012721          349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV---SGDGLHFATGSYS  405 (457)
Q Consensus       349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~d~~~l~s~~~d  405 (457)
                      .|..++..  ++............             ..++++|   ++|++.|+.++..
T Consensus       230 ~V~~i~p~--G~~~~~~~~~~~~~-------------~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         230 SVVRIAPD--RSTTIIAQAEQGVI-------------GSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CEEEECTT--CCEEEEECGGGTCT-------------TEEEEEECCSTTTTTEEEEEECT
T ss_pred             cEEEECCC--CCEEEEEecCCCCC-------------CceEEEEcCCCCCCCEEEEECCC
Confidence            88888764  44333333222211             1158999   6788877766543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=4.8e-08  Score=83.99  Aligned_cols=159  Identities=11%  Similarity=0.148  Sum_probs=111.7

Q ss_pred             CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      ......+++.+++.++++. ..+.+.+++.+  +..+..+.     ...+......+++.+++ +++++....+.|++||
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g-----~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d  184 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFN  184 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEE
T ss_pred             ccccceeccccCCcEEEEeeccceeeEeccC--Cceeeccc-----ccccccccceeeeccce-eEEeeeccccceeeee
Confidence            3456788999999988887 78888888876  44444432     23455678899999998 8888888999999999


Q ss_pred             ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeEeeeccccccc
Q 012721          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPK  374 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~  374 (457)
                      ......     ..+..           .+.......|++.++|+++++-. . +.|.+|+..  ++.+..+........ 
T Consensus       185 ~~G~~~-----~~~g~-----------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--G~~~~~~~~~~~~~~-  245 (279)
T d1q7fa_         185 YEGQYL-----RQIGG-----------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHAQ-  245 (279)
T ss_dssp             TTCCEE-----EEESC-----------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCSC-
T ss_pred             cCCcee-----eeecc-----------cccccCCcccccccCCeEEEEECCCCcEEEEECCC--CCEEEEEeCCCCCCC-
Confidence            765321     12211           11224567899999999777643 2 579999864  777777654332110 


Q ss_pred             cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721          375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~  416 (457)
                                  ...+++.|||.+++ ++.+++|++|.....
T Consensus       246 ------------p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         246 ------------CFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ------------EEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             ------------EeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence                        15799999997655 567899999998765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=1.1e-08  Score=87.18  Aligned_cols=153  Identities=7%  Similarity=0.018  Sum_probs=98.1

Q ss_pred             CCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~  297 (457)
                      .....+++.++++++++- .+..+..++.....  .....     .. .......+++.+++ +++++...++.|..+|.
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~--~~~~~-----~~-~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT--QTVLP-----FT-GLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS--CEECC-----CC-SCCSCCEEEECTTC-CEEEEEGGGTEEEEECT
T ss_pred             eecccccccccceeEeeccccccccccccccce--eeeee-----ec-ccCCcceeeecCCC-CEeeecccccccccccc
Confidence            356789999999888777 77778888776222  21110     11 12345789999998 88888888899999998


Q ss_pred             cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccc
Q 012721          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  376 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  376 (457)
                      ......     .+..            ........|+++++|+++++... +.|..++...  .....+.......    
T Consensus       169 ~~~~~~-----~~~~------------~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~--~~~~~~~~~~~~~----  225 (260)
T d1rwia_         169 ESNNQV-----VLPF------------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--TTSTVLPFTGLNT----  225 (260)
T ss_dssp             TTCCEE-----ECCC------------SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC--SCCEECCCCSCCC----
T ss_pred             ccceee-----eeec------------cccCCCccceeeeeeeeeeeecCCCEEEEEeCCC--CeEEEEccCCCCC----
Confidence            764322     1110            01234678999999988777655 7788887642  3222222111000    


Q ss_pred             cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721          377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  413 (457)
Q Consensus       377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~  413 (457)
                                ...++++++|.++++-..+++|+.++.
T Consensus       226 ----------P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         226 ----------PLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ----------EEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             ----------eEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence                      157999999988777666776665543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.17  E-value=4e-10  Score=101.80  Aligned_cols=156  Identities=12%  Similarity=0.070  Sum_probs=96.5

Q ss_pred             CCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCcc--EEEEEccCCe-
Q 012721          217 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN--LLAYSSSRGF-  291 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~--~l~~~~~dg~-  291 (457)
                      |..........|||++|++.  .++.|.++|++ ..+..+++.+      .+...+..++|+|++ +  +++..+.+.. 
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~-t~k~~~ii~i------P~g~gphgi~~spdg-~t~YV~~~~~~~v~  141 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLD-IMKTDKITHI------PNVQAIHGLRLQKVP-KTNYVFCNAEFVIP  141 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEEC------TTCCCEEEEEECCSS-BCCEEEEEECSCEE
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECC-CCcEeeEEec------CCCCCccceEEeccC-CEEEEEeccCCccc
Confidence            44455566678999999776  89999999999 5666655432      245678999999998 5  4444333321 


Q ss_pred             ----------------EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--C-----
Q 012721          292 ----------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M-----  348 (457)
Q Consensus       292 ----------------i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~-----  348 (457)
                                      +..+|..+.+..    .....              ......+.|+|+|+++++++.  .     
T Consensus       142 ~~~dg~~~~~~~~~~~~~~iD~~t~~v~----~qI~v--------------~~~p~~v~~spdGk~a~vt~~nse~~~~i  203 (441)
T d1qnia2         142 QPNDGTDFSLDNSYTMFTAIDAETMDVA----WQVIV--------------DGNLDNTDADYTGKYATSTCYNSERAVDL  203 (441)
T ss_dssp             SSCSSSCCCGGGEEEEEEEEETTTCSEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSH
T ss_pred             ccCcccccccccccceEEeecCccceee----EEEec--------------CCCccceEECCCCCEEEEEecCCCceEEE
Confidence                            233555544322    00111              134667888888888876542  1     


Q ss_pred             -----------------------------------cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc
Q 012721          349 -----------------------------------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  393 (457)
Q Consensus       349 -----------------------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  393 (457)
                                                         .+.+++... .+.+..+.....+                ..+.++
T Consensus       204 d~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~-~~v~~~IPvgksP----------------hGv~vS  266 (441)
T d1qnia2         204 AGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE-SEFTRYIPVPKNP----------------HGLNTS  266 (441)
T ss_dssp             HHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS-CSSEEEECCBSSC----------------CCEEEC
T ss_pred             eccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC-CceEEEEeCCCCc----------------cCceEC
Confidence                                               222222221 2333334333332                579999


Q ss_pred             CCCcEEE-EEeCCCcEEEEecCC
Q 012721          394 GDGLHFA-TGSYSNLLRIFSHGV  415 (457)
Q Consensus       394 ~d~~~l~-s~~~dg~i~iw~~~~  415 (457)
                      |||++++ ++..+++|.+||+.+
T Consensus       267 PDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         267 PDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             TTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CCCCEEEEeCCcCCcEEEEEeeh
Confidence            9999875 567799999999875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.11  E-value=2.7e-08  Score=86.74  Aligned_cols=232  Identities=13%  Similarity=0.077  Sum_probs=142.0

Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      .+..+++  +++|+++++...++.|..|+... +....                                          
T Consensus        29 ~~e~iAv--~pdG~l~vt~~~~~~I~~i~p~g-~~~~~------------------------------------------   63 (302)
T d2p4oa1          29 FLENLAS--APDGTIFVTNHEVGEIVSITPDG-NQQIH------------------------------------------   63 (302)
T ss_dssp             CEEEEEE--CTTSCEEEEETTTTEEEEECTTC-CEEEE------------------------------------------
T ss_pred             CcCCEEE--CCCCCEEEEeCCCCEEEEEeCCC-CEEEE------------------------------------------
Confidence            4778999  78999999888899887777443 22211                                          


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v  273 (457)
                                          ......+.+++|+++|+++++. .++.+..|+..........+.     ..........+
T Consensus        64 --------------------~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~n~i  118 (302)
T d2p4oa1          64 --------------------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL-----TLPDAIFLNGI  118 (302)
T ss_dssp             --------------------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE-----ECTTCSCEEEE
T ss_pred             --------------------EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc-----ccCCcccccee
Confidence                                1233468899999999999988 888888888763322222210     11234567899


Q ss_pred             EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-e-cCcEE
Q 012721          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLK  351 (457)
Q Consensus       274 ~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~-~~~i~  351 (457)
                      ++.+++ +++++.+.++.+..+|...+....     +.. . .................+.++  +.++..+ + .+.|+
T Consensus       119 ~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~-----~~~-~-~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         119 TPLSDT-QYLTADSYRGAIWLIDVVQPSGSI-----WLE-H-PMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLL  188 (302)
T ss_dssp             EESSSS-EEEEEETTTTEEEEEETTTTEEEE-----EEE-C-GGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             EEccCC-CEEeeccccccceeeeccCCccee-----Eec-C-CccceeeccCccccccccccc--CCceeeecCCCCeEE
Confidence            999999 999988899999999988764321     110 0 000000011112345566665  4445443 3 38888


Q ss_pred             EEeccCCCCce--eEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCc
Q 012721          352 LWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  429 (457)
Q Consensus       352 ~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~  429 (457)
                      .++........  ..+......                ..+++.+||++.++...+++|..++.................
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~p----------------dgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~  252 (302)
T d2p4oa1         189 RIPVDSTDKPGEPEIFVEQTNI----------------DDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIG  252 (302)
T ss_dssp             EEEBCTTSCBCCCEEEEESCCC----------------SSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTT
T ss_pred             eccccccccccccccccCCCCC----------------cceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCC
Confidence            88876422221  111111111                379999999988888889999999865331112222233345


Q ss_pred             ceeeee---ccCCcce
Q 012721          430 NRKPIL---QAAPRAR  442 (457)
Q Consensus       430 v~~~~~---~p~~~~~  442 (457)
                      .+.++|   +||+...
T Consensus       253 pt~vafg~~~~D~~~L  268 (302)
T d2p4oa1         253 STAVAFGQTEGDCTAI  268 (302)
T ss_dssp             EEEEEECCSTTTTTEE
T ss_pred             ceEEEEcCCCCCCCEE
Confidence            678899   5565444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.10  E-value=7.2e-08  Score=84.29  Aligned_cols=160  Identities=9%  Similarity=0.068  Sum_probs=96.1

Q ss_pred             eeEEEeCCCCCEEEEe-C---------------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc----
Q 012721          221 INSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC----  280 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~-~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~----  280 (457)
                      .+.+++.++|.+.++- .               ++.|+.++.+  +......        ........++|+|++.    
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~~~~--------~~~~~pNGi~~~~d~d~~~~  188 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQVD--------TAFQFPNGIAVRHMNDGRPY  188 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEEEE--------EEESSEEEEEEEECTTSCEE
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec--CceeEee--------CCcceeeeeEECCCCCccee
Confidence            4677888888877763 1               2345444443  3332221        1223456889998762    


Q ss_pred             cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCC
Q 012721          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS  359 (457)
Q Consensus       281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~  359 (457)
                      .++++-+..+.|..||+........ .+.+..   .+      ..+......+++.++|++.++... +.|.+||.+. +
T Consensus       189 ~lyv~d~~~~~i~~~d~~~~g~~~~-~~~~~~---~~------~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~-g  257 (314)
T d1pjxa_         189 QLIVAETPTKKLWSYDIKGPAKIEN-KKVWGH---IP------GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-G  257 (314)
T ss_dssp             EEEEEETTTTEEEEEEEEETTEEEE-EEEEEE---CC------CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-B
T ss_pred             EEEEEeecccceEEeeccCccccce-eeEEEE---cc------ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC-C
Confidence            1555557788999998765422211 011111   00      001123567999999998777654 9999999864 5


Q ss_pred             CceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEEecCCC
Q 012721          360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG  416 (457)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw~~~~~  416 (457)
                      +....+..+....               ++++|.||++ +.++.+.+|+|...++...
T Consensus       258 ~~~~~i~~p~~~~---------------t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         258 QPKMRIRCPFEKP---------------SNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             SCSEEEECSSSCE---------------EEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEEEEECCCCCE---------------EEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            5555555443222               5899999987 4456667788888887654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.1e-07  Score=81.20  Aligned_cols=128  Identities=10%  Similarity=0.002  Sum_probs=73.0

Q ss_pred             eeEEEeCCCCCEEEE-e-CCC--eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEE
Q 012721          221 INSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLV  295 (457)
Q Consensus       221 v~~~~~~~~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lw  295 (457)
                      .....+++++..++. . .++  .|.+.++. ......        +...........|+|++ ..++..+ ..+...+|
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~-~~~~~~--------~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~i~  198 (269)
T d2hqsa1         129 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN-GGAPQR--------ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIA  198 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETT-SSCCEE--------CCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEE
T ss_pred             ccccccccccccceecccccCCceEeeeecc-ccccee--------eeccccccccccccccc-ceeEEEeecCCceeee
Confidence            344556666665544 3 455  45555555 222221        23455677888999999 6666655 44444444


Q ss_pred             --EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---c-CcEEEEeccCCCCceeEeeecc
Q 012721          296 --DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATFKIHE  369 (457)
Q Consensus       296 --d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~-~~i~~wd~~~~~~~~~~~~~~~  369 (457)
                        |...+..     ....              +........|||||+.|+-.+   . ..|+++++.  +.....+....
T Consensus       199 ~~~~~~~~~-----~~~~--------------~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d--g~~~~~lt~~~  257 (269)
T d2hqsa1         199 KQDLATGGV-----QVLS--------------STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATD  257 (269)
T ss_dssp             EEETTTCCE-----EECC--------------CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT--SCCEEECCCSS
T ss_pred             Eeecccccc-----eEee--------------cCccccceEECCCCCEEEEEEcCCCCcEEEEEECC--CCCEEEEeCCC
Confidence              4433321     1111              124567789999999998433   2 578888886  44444554444


Q ss_pred             ccccccccccCCCCccccceEEEcC
Q 012721          370 HLRPKLCDLYNNDSIFDKFECSVSG  394 (457)
Q Consensus       370 ~~~~~~~~~~~~~~~~~v~~~~~s~  394 (457)
                      ..+               ...+|||
T Consensus       258 g~~---------------~~p~WSP  267 (269)
T d2hqsa1         258 GQV---------------KFPAWSP  267 (269)
T ss_dssp             SEE---------------EEEEECC
T ss_pred             CcE---------------EeEEeCC
Confidence            332               3678988

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=1.1e-06  Score=74.38  Aligned_cols=180  Identities=9%  Similarity=0.032  Sum_probs=113.2

Q ss_pred             eeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721          221 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~  299 (457)
                      ...++++++++++++. .++.+++++-. ......        ..........+++.+++ +++++-..+..+..++...
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~-~~~~~~--------~~~~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~  128 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGS-NNQTVL--------PFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGS  128 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTC-SCCEEC--------CCCSCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeec-cceeee--------eeeeeeecccccccccc-eeEeecccccccccccccc
Confidence            4578899999988877 66667666544 222221        11123457899999998 8887777777777777655


Q ss_pred             CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccc
Q 012721          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  378 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  378 (457)
                      ....     .+..           . -......++++++|+++++... +.|..+|.+.  .....+.......      
T Consensus       129 ~~~~-----~~~~-----------~-~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~--~~~~~~~~~~~~~------  183 (260)
T d1rwia_         129 KTQT-----VLPF-----------T-GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES--NNQVVLPFTDITA------  183 (260)
T ss_dssp             SSCE-----ECCC-----------C-SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT--CCEEECCCSSCCS------
T ss_pred             ceee-----eeee-----------c-ccCCcceeeecCCCCEeeecccccccccccccc--ceeeeeeccccCC------
Confidence            4221     1110           0 0123568899999987776554 8899998763  3222222111110      


Q ss_pred             cCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721          379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  444 (457)
Q Consensus       379 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~  444 (457)
                              ...+++.++|.++++....+.|..++.... ...............+++.+++.....
T Consensus       184 --------p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~-~~~~~~~~~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         184 --------PWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TSTVLPFTGLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             --------EEEEEECTTCCEEEEETTTTEEEEECTTCS-CCEECCCCSCCCEEEEEECTTCCEEEE
T ss_pred             --------CccceeeeeeeeeeeecCCCEEEEEeCCCC-eEEEEccCCCCCeEEEEEeCCCCEEEE
Confidence                    047999999998888888888988886655 222222233455678999998866555

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.83  E-value=7.2e-06  Score=71.42  Aligned_cols=154  Identities=6%  Similarity=-0.027  Sum_probs=89.8

Q ss_pred             CeeEEEeCCCCCEEEEe-C------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeE
Q 012721          220 NINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i  292 (457)
                      ..+.+++.++|++.++. .      .+.+..++.+  +..+..+       ...-.....++|+|++..++++-+..+.|
T Consensus       131 ~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d--g~~~~~~-------~~~~~~pnGia~s~dg~~lyvad~~~~~I  201 (319)
T d2dg1a1         131 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVTPI-------IQNISVANGIALSTDEKVLWVTETTANRL  201 (319)
T ss_dssp             CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEEEE-------EEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             CCcceeEEeccceeecccccccccCcceeEEEecc--cceeEEE-------eeccceeeeeeeccccceEEEecccCCce
Confidence            46788999999877774 2      2335555544  2222211       11223457899999993345666678999


Q ss_pred             EEEEccCCeeecccc-ccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccc
Q 012721          293 RLVDMRQSALCDHSA-RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       293 ~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                      ..||+.......... .....          .......-..+++.++|++.++... +.|.+||..  ++.+..+.....
T Consensus       202 ~~~d~~~~g~~~~~~~~~~~~----------~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~--G~~l~~i~~P~~  269 (319)
T d2dg1a1         202 HRIALEDDGVTIQPFGATIPY----------YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGR  269 (319)
T ss_dssp             EEEEECTTSSSEEEEEEEEEE----------ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT--SCEEEEEECTTG
T ss_pred             EEEEEcCCCceeccccceeee----------ccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC--CcEEEEEeCCCc
Confidence            999986532111000 00000          0000123467999999987777654 999999964  788877765432


Q ss_pred             cccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721          371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  403 (457)
Q Consensus       371 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  403 (457)
                      ...         ....+++++|.++...+++..
T Consensus       270 ~~~---------~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         270 DEG---------HMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             GGT---------CSCBCCEEEECTTSCEEEEEE
T ss_pred             CCC---------cCceeeeEEEeCCCCEEEEEc
Confidence            110         011126899998877666544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8.1e-07  Score=81.91  Aligned_cols=249  Identities=12%  Similarity=0.105  Sum_probs=133.7

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEE
Q 012721           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (457)
Q Consensus        38 ~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~  117 (457)
                      ..|.+++.++.. ..+|.|.+|++.+++..                         .+  +..+.  |.       .-.+.
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~-------------------------~l--~~~~~--~~-------~~~~~   64 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTST-------------------------VL--IEGKK--IE-------SLRAI   64 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-------------------------EE--ECTTT--TT-------TTTCS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEE-------------------------EE--EcCcc--cc-------ccccc
Confidence            368888887654 56788999999887642                         11  11111  00       02355


Q ss_pred             EEEEEecCCCCEEEEee---------CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721          118 RVRWCAAPNGSMFILST---------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (457)
Q Consensus       118 ~v~~~~s~~~~~l~s~s---------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (457)
                      ...|  |||+++++...         ..+.+.++|+.++....+...                                 
T Consensus        65 ~~~~--SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~---------------------------------  109 (465)
T d1xfda1          65 RYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP---------------------------------  109 (465)
T ss_dssp             EEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT---------------------------------
T ss_pred             eeEE--CCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCc---------------------------------
Confidence            6677  89999887753         345667777776654332110                                 


Q ss_pred             ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCC--cccCC
Q 012721          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS--NMDDL  266 (457)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~  266 (457)
                                                ......+....|+|||+.||...++.|++.+.. .+...++..-...  .+.+.
T Consensus       110 --------------------------~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~-~~~~~~lt~~g~~~~i~nG~  162 (465)
T d1xfda1         110 --------------------------EVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVVSTGKEGVIYNGL  162 (465)
T ss_dssp             --------------------------TCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEECCCBTTTEEEEE
T ss_pred             --------------------------cCCccccceeeeccCCceEEEEecceEEEEecC-CCceEEEecccCcceeeccc
Confidence                                      122334666889999999999888889999887 4444444321110  00011


Q ss_pred             C---------CceEEEEEecCCccEEEEEc-cCCeEEEEEccCC--eee--cc--------------ccccccccccccC
Q 012721          267 T---------EVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQS--ALC--DH--------------SARILRDAAESHG  318 (457)
Q Consensus       267 ~---------~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~--~~~--~~--------------~~~~~~~~~~~~~  318 (457)
                      .         ..-..+-|+||| +.||... .+..|..+.+...  ...  ..              .+.++.. .....
T Consensus       163 ~d~vyeee~~~~~~a~~WSPDg-k~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~-~~~~~  240 (465)
T d1xfda1         163 SDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL-NGPTH  240 (465)
T ss_dssp             CCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES-SSSCC
T ss_pred             cchhhhhhhccccceEEECCCC-CeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec-CCCcE
Confidence            1         112567899999 8888765 3344444443211  000  00              0000000 00000


Q ss_pred             c-----ccceeccccceEEEEEccCCCeEEEEec-----CcEEEEeccCCCCceeEeeec-cccccccccccCCCCcccc
Q 012721          319 S-----KSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDK  387 (457)
Q Consensus       319 ~-----~~~~~~h~~~v~~~~~s~~g~~l~s~~~-----~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v  387 (457)
                      .     ..........+..+.|+|++++++...+     ..|.++|..+ ++....+... ...+...           -
T Consensus       241 ~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~t-g~~~~~~~e~~~~wv~~~-----------~  308 (465)
T d1xfda1         241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQ-----------N  308 (465)
T ss_dssp             CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCC-----------C
T ss_pred             EEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCC-CcEEEEEEEcCCceEecc-----------C
Confidence            0     0001112235788999999987776432     4678888875 5544443322 2222100           0


Q ss_pred             ceEEEcCCCcEE
Q 012721          388 FECSVSGDGLHF  399 (457)
Q Consensus       388 ~~~~~s~d~~~l  399 (457)
                      ....|+|||+.+
T Consensus       309 ~~p~~~~dg~~~  320 (465)
T d1xfda1         309 EEPVFSKDGRKF  320 (465)
T ss_dssp             CCCEECTTSCSE
T ss_pred             CceeEccCCCee
Confidence            246889998743

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.75  E-value=1.7e-05  Score=68.95  Aligned_cols=229  Identities=14%  Similarity=0.122  Sum_probs=133.5

Q ss_pred             EEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (457)
Q Consensus       116 V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (457)
                      +..++|  .++|+++++-...+.|..|+..++......                                          
T Consensus        42 lEG~~~--D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~------------------------------------------   77 (319)
T d2dg1a1          42 LEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF------------------------------------------   77 (319)
T ss_dssp             EEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE------------------------------------------
T ss_pred             cEeCEE--CCCCCEEEEECCCCEEEEEECCCCeEEEEE------------------------------------------
Confidence            567888  688887777667888888777665433221                                          


Q ss_pred             eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC----CeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (457)
Q Consensus       196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  270 (457)
                                         .........++++++|+++++. .+    +.+...+.. .........     -..-....
T Consensus        78 -------------------~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~-~~~~~~~~~-----~~~~~~~~  132 (319)
T d2dg1a1          78 -------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIE-----DLSTAYCI  132 (319)
T ss_dssp             -------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEEC-----SSSSCCCE
T ss_pred             -------------------eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC-Cceeeeecc-----CCCcccCC
Confidence                               1223356789999999988875 32    334444444 222222211     01112446


Q ss_pred             EEEEEecCCccEEEEEcc------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721          271 TSAEFHPIYCNLLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (457)
Q Consensus       271 ~~v~~~p~~~~~l~~~~~------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  344 (457)
                      ..+.+.++| ++.++...      .+.+..++...+...    .+...              -...+.++|+|+++.|..
T Consensus       133 nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~~~----~~~~~--------------~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         133 DDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQN--------------ISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             EEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEEE--------------ESSEEEEEECTTSSEEEE
T ss_pred             cceeEEecc-ceeecccccccccCcceeEEEecccceeE----EEeec--------------cceeeeeeeccccceEEE
Confidence            789999999 76665432      123444443332111    11111              134578999999997766


Q ss_pred             Ee-c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721          345 RD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  422 (457)
Q Consensus       345 ~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~  422 (457)
                      ++ . +.|..|++...+..............  .      ....--.+++.++|++.++....+.|.+|+- .| +.+..
T Consensus       194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~--~------~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G-~~l~~  263 (319)
T d2dg1a1         194 TETTANRLHRIALEDDGVTIQPFGATIPYYF--T------GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG-YPIGQ  263 (319)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEEEEEEEEC--C------SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS-CEEEE
T ss_pred             ecccCCceEEEEEcCCCceeccccceeeecc--C------CccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC-cEEEE
Confidence            54 3 89999998754443332221100000  0      0000036899999998888888999999995 56 44444


Q ss_pred             Ee------cCCCcceeeeeccCCcce
Q 012721          423 VE------AGKNENRKPILQAAPRAR  442 (457)
Q Consensus       423 ~~------~~~~~v~~~~~~p~~~~~  442 (457)
                      +.      ++...+.+++|.|.+...
T Consensus       264 i~~P~~~~~~~~~~~~~~~~~~~~~~  289 (319)
T d2dg1a1         264 ILIPGRDEGHMLRSTHPQFIPGTNQL  289 (319)
T ss_dssp             EECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred             EeCCCcCCCcCceeeeEEEeCCCCEE
Confidence            43      334457788898876433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.69  E-value=2.6e-06  Score=72.60  Aligned_cols=72  Identities=8%  Similarity=0.068  Sum_probs=42.7

Q ss_pred             ceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721          329 SISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  406 (457)
Q Consensus       329 ~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  406 (457)
                      ......++++..+......  ..|.++|++  +.....+..+...                ....|+|||+.|+.. .++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~~~lt~~~~~----------------~~~~~SpDG~~I~f~-~~~  253 (281)
T d1k32a2         193 HVSSPVIVGHRIYFITDIDGFGQIYSTDLD--GKDLRKHTSFTDY----------------YPRHLNTDGRRILFS-KGG  253 (281)
T ss_dssp             CCEEEEEETTEEEEEECTTSSCEEEEEETT--SCSCEECCCCCSS----------------CEEEEEESSSCEEEE-ETT
T ss_pred             ccceeeeeccccceecccccccceEEEeCC--CCceEEeecCCCc----------------ccccCcCCCCEEEEE-eCC
Confidence            3445556655322222222  567777775  3444444333221                235799999988764 468


Q ss_pred             cEEEEecCCCCce
Q 012721          407 LLRIFSHGVGSAG  419 (457)
Q Consensus       407 ~i~iw~~~~~~~~  419 (457)
                      .|+++|+.+++..
T Consensus       254 ~l~~~d~~~g~~~  266 (281)
T d1k32a2         254 SIYIFNPDTEKIE  266 (281)
T ss_dssp             EEEEECTTTCCEE
T ss_pred             EEEEEECCCCCEE
Confidence            8999999988433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.69  E-value=1.3e-05  Score=69.59  Aligned_cols=186  Identities=9%  Similarity=0.020  Sum_probs=109.8

Q ss_pred             CeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC-CCceEEEEEecCCccEEEEEcc---------
Q 012721          220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSS---------  288 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~~---------  288 (457)
                      .-..++|.++++.++++ ..+.|..++.+ .. ...++...   ..+. -.....+++.++| ++.++-..         
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~-g~-~~~~~~~~---~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~  145 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTD-GT-FEEIAKKD---SEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYT  145 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETT-SC-EEECCSBC---TTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCC
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCC-Cc-EEEEEecc---ccccccCCCcEEEECCCC-CEEEecCccCccccccc
Confidence            35679999999888777 77778888877 32 22221100   1111 1235778999998 77766432         


Q ss_pred             ------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC----eEEEE-ec-CcEEEEecc
Q 012721          289 ------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ----HLLSR-DY-MNLKLWDIR  356 (457)
Q Consensus       289 ------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~----~l~s~-~~-~~i~~wd~~  356 (457)
                            +|.|..++.... ..    ...              ..-..-+.++|+|++.    +|..+ +. +.|..||+.
T Consensus       146 ~~~~~~~G~v~~~~~dg~-~~----~~~--------------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~  206 (314)
T d1pjxa_         146 RSMQEKFGSIYCFTTDGQ-MI----QVD--------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             BTTSSSCEEEEEECTTSC-EE----EEE--------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             ceeccCCceEEEEeecCc-ee----Eee--------------CCcceeeeeEECCCCCcceeEEEEEeecccceEEeecc
Confidence                  223333332211 10    111              1112346789998764    45544 33 889888886


Q ss_pred             CCCCceeE--eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeee
Q 012721          357 MDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI  434 (457)
Q Consensus       357 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~  434 (457)
                      ..+.....  +.......           ....-.+++..+|++.++....+.|.+|+.+.+ .....+........+++
T Consensus       207 ~~g~~~~~~~~~~~~~~~-----------~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g-~~~~~i~~p~~~~t~~a  274 (314)
T d1pjxa_         207 GPAKIENKKVWGHIPGTH-----------EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG-QPKMRIRCPFEKPSNLH  274 (314)
T ss_dssp             ETTEEEEEEEEEECCCCS-----------SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB-SCSEEEECSSSCEEEEE
T ss_pred             CccccceeeEEEEccccc-----------cccceeeEEecCCcEEEEEcCCCEEEEEeCCCC-EEEEEEECCCCCEEEEE
Confidence            53332211  11111000           000036899999998888878899999998877 45556666667788999


Q ss_pred             eccCCcce
Q 012721          435 LQAAPRAR  442 (457)
Q Consensus       435 ~~p~~~~~  442 (457)
                      |.|++...
T Consensus       275 fg~d~~~l  282 (314)
T d1pjxa_         275 FKPQTKTI  282 (314)
T ss_dssp             ECTTSSEE
T ss_pred             EeCCCCEE
Confidence            99988643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.67  E-value=3.8e-05  Score=65.27  Aligned_cols=230  Identities=9%  Similarity=0.059  Sum_probs=142.6

Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      ....|++  +++++++++-..++.|++||.+ |+...........                                   
T Consensus        24 ~P~gvav--d~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~-----------------------------------   65 (279)
T d1q7fa_          24 EPSGVAV--NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-----------------------------------   65 (279)
T ss_dssp             CEEEEEE--CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-----------------------------------
T ss_pred             CccEEEE--cCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC-----------------------------------
Confidence            3578898  7888888877778889999865 4443322111000                                   


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  271 (457)
                                          .+....-..+++.++ +..+++.  .++.|..++..  +.....+.      ........
T Consensus        66 --------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~~~~~~------~~~~~~p~  117 (279)
T d1q7fa_          66 --------------------DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKFG------ATILQHPR  117 (279)
T ss_dssp             --------------------TTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEEC------TTTCSCEE
T ss_pred             --------------------cccccccccccccccccccceeccCCcccccccccc--ccceeecC------CCcccccc
Confidence                                111112234444443 4444444  56678888765  44443321      22345678


Q ss_pred             EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcE
Q 012721          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  350 (457)
Q Consensus       272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i  350 (457)
                      .+++.+++ .++++....+.+.+++.... ..    ..+..           ..+......+++.+++.++++... +.|
T Consensus       118 ~~avd~~G-~i~v~~~~~~~~~~~~~~g~-~~----~~~g~-----------~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         118 GVTVDNKG-RIIVVECKVMRVIIFDQNGN-VL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             EEEECTTS-CEEEEETTTTEEEEECTTSC-EE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             eeccccCC-cEEEEeeccceeeEeccCCc-ee----ecccc-----------cccccccceeeeccceeEEeeeccccce
Confidence            89999998 88888888888888886543 21    12211           122356788999999988777665 999


Q ss_pred             EEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCCceeeEEecC--C
Q 012721          351 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAG--K  427 (457)
Q Consensus       351 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~--~  427 (457)
                      ++||..  ++.+..+...... .            ....+++.++|+++++-.. ++.|.+|+. +| +.+..+...  .
T Consensus       181 ~~~d~~--G~~~~~~g~~g~~-~------------~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G-~~~~~~~~~~~~  243 (279)
T d1q7fa_         181 KVFNYE--GQYLRQIGGEGIT-N------------YPIGVGINSNGEILIADNHNNFNLTIFTQ-DG-QLISALESKVKH  243 (279)
T ss_dssp             EEEETT--CCEEEEESCTTTS-C------------SEEEEEECTTCCEEEEECSSSCEEEEECT-TS-CEEEEEEESSCC
T ss_pred             eeeecC--Cceeeeecccccc-c------------CCcccccccCCeEEEEECCCCcEEEEECC-CC-CEEEEEeCCCCC
Confidence            999975  6766666321111 0            0157999999997777554 457999984 45 444444332  3


Q ss_pred             CcceeeeeccCCcceec
Q 012721          428 NENRKPILQAAPRARRS  444 (457)
Q Consensus       428 ~~v~~~~~~p~~~~~~~  444 (457)
                      .....+++.|++.-...
T Consensus       244 ~~p~~vav~~dG~l~V~  260 (279)
T d1q7fa_         244 AQCFDVALMDDGSVVLA  260 (279)
T ss_dssp             SCEEEEEEETTTEEEEE
T ss_pred             CCEeEEEEeCCCcEEEE
Confidence            45688999999876554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.65  E-value=5.7e-06  Score=73.61  Aligned_cols=128  Identities=7%  Similarity=0.021  Sum_probs=76.0

Q ss_pred             CCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcce-e---eeeecCCC-------cccCCCCceEEEEEecCCccEEE
Q 012721          218 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQC-F---NIVDMKPS-------NMDDLTEVITSAEFHPIYCNLLA  284 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~-~---~~~~~~~~-------~~~~~~~~i~~v~~~p~~~~~l~  284 (457)
                      ......++|+|++++++..  .+++|.+|+++..... .   ....+.+.       ....+......+.++|+| ++|+
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~ly  270 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMF  270 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEE
Confidence            3467889999999988665  8999999998733211 1   11111110       111233456788999999 7776


Q ss_pred             EEcc------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEe-c-CcEEEEec
Q 012721          285 YSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-Y-MNLKLWDI  355 (457)
Q Consensus       285 ~~~~------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~-~-~~i~~wd~  355 (457)
                      ++..      .+.|..|++...............           .........++++| +|++|+++. + +.|.+|++
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-----------~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-----------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-----------SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEE-----------EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            6632      234767776543211110011100           00123456789998 899998775 3 99999998


Q ss_pred             cC
Q 012721          356 RM  357 (457)
Q Consensus       356 ~~  357 (457)
                      +.
T Consensus       340 ~~  341 (365)
T d1jofa_         340 KD  341 (365)
T ss_dssp             ET
T ss_pred             eC
Confidence            63

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.3e-05  Score=73.58  Aligned_cols=80  Identities=14%  Similarity=0.193  Sum_probs=53.4

Q ss_pred             CceEEEEECCCCCEEEEEe---------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcc
Q 012721           33 DIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (457)
Q Consensus        33 ~~V~~~~~s~~~~~latg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  103 (457)
                      -.+....||||+++|+.+.         ..+.+.|+|+.++...                         .+.......  
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-------------------------~l~~~~~~~--  113 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-------------------------SLDPPEVSN--  113 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------ECCCTTCCS--
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee-------------------------eccCccCCc--
Confidence            3567788999999988763         3567889998877642                         111111111  


Q ss_pred             ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEE
Q 012721          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI  152 (457)
Q Consensus       104 ~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~  152 (457)
                                ..+....|  ||+|+.+|-.. ++.|.+.+..++...++
T Consensus       114 ----------~~l~~~~w--SPDG~~iafv~-~~nl~~~~~~~~~~~~l  149 (465)
T d1xfda1         114 ----------AKLQYAGW--GPKGQQLIFIF-ENNIYYCAHVGKQAIRV  149 (465)
T ss_dssp             ----------CCCSBCCB--CSSTTCEEEEE-TTEEEEESSSSSCCEEE
T ss_pred             ----------cccceeee--ccCCceEEEEe-cceEEEEecCCCceEEE
Confidence                      34556778  89999988766 56688888777655444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.53  E-value=9.3e-05  Score=63.29  Aligned_cols=145  Identities=10%  Similarity=0.035  Sum_probs=90.4

Q ss_pred             CeeEEEeCCCCCEEEEe-C----CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721          220 NINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l  294 (457)
                      .++.+.+.|+|++.++. .    .+.-.+|.+. .++...+.        ........++|++++..++++-+..+.|..
T Consensus       104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~~--------~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1         104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF--------ADISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEE--------EEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             cceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEEe--------eccCCcceeeecCCCceEEEeecccceeeE
Confidence            57788899999887774 2    2345566665 34433321        122345789999999445666677889999


Q ss_pred             EEccCCeeec-cccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccc
Q 012721          295 VDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  372 (457)
Q Consensus       295 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~  372 (457)
                      |++....... .....+..          +.+..+....+++..+|.+.++.-. +.|..||.+  ++.+..+.......
T Consensus       175 ~~~d~~~~~~~~~~~~~~~----------~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~--G~~~~~i~lP~~~~  242 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFID----------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQT  242 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEE----------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSBE
T ss_pred             eeecccccccccceEEEec----------cCcccccccceEEcCCCCEEeeeeCCCceEEecCC--CcEeeEecCCCCce
Confidence            9875432110 00111110          1112345778999999987776544 889999964  78888887654332


Q ss_pred             cccccccCCCCccccceEEEc-CCCcEEE
Q 012721          373 PKLCDLYNNDSIFDKFECSVS-GDGLHFA  400 (457)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~s-~d~~~l~  400 (457)
                                     ++++|- +|.+.|+
T Consensus       243 ---------------T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         243 ---------------TCPAFIGPDASRLL  256 (295)
T ss_dssp             ---------------EEEEEESTTSCEEE
T ss_pred             ---------------EEEEEeCCCCCEEE
Confidence                           689995 6765554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.36  E-value=0.0005  Score=58.56  Aligned_cols=182  Identities=12%  Similarity=0.100  Sum_probs=111.3

Q ss_pred             CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc----CCeEEEE
Q 012721          220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLV  295 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~----dg~i~lw  295 (457)
                      .+.++++.+++.+++++.+ .|.++|.. .++...+.+..   -......+..+.+.|+| ++.++...    .+.-.+|
T Consensus        60 ~~~~i~~~~dg~l~va~~~-gl~~~d~~-tg~~~~l~~~~---~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          60 MGSALAKISDSKQLIASDD-GLFLRDTA-TGVLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             CEEEEEEEETTEEEEEETT-EEEEEETT-TCCEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEE
T ss_pred             CcEEEEEecCCCEEEEEeC-ccEEeecc-cceeeEEeeee---cCCCcccceeeEECCCC-CEEEEeccccccccceeEe
Confidence            5778888888877776654 58889988 44443332211   11123457889999999 76665432    2344566


Q ss_pred             EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ec-CcEEEEeccCCCCc----eeEeeecc
Q 012721          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTP----VATFKIHE  369 (457)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~-~~i~~wd~~~~~~~----~~~~~~~~  369 (457)
                      .+..++..    .+...              -..-+.++|+++++.+..+ +. +.|..|++......    ...+....
T Consensus       134 ~~~~g~~~----~~~~~--------------~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~  195 (295)
T d2ghsa1         134 HVAKGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST  195 (295)
T ss_dssp             EEETTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred             eecCCcEE----EEeec--------------cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccC
Confidence            66555432    22221              1345789999999877655 44 88998887532111    11111111


Q ss_pred             ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec-cCC
Q 012721          370 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ-AAP  439 (457)
Q Consensus       370 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~-p~~  439 (457)
                      ....            ....+++..+|++.++.-..+.|..||- .| +....+.--...+++++|- |+.
T Consensus       196 ~~~g------------~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G-~~~~~i~lP~~~~T~~~FGG~d~  252 (295)
T d2ghsa1         196 GIKG------------GMDGSVCDAEGHIWNARWGEGAVDRYDT-DG-NHIARYEVPGKQTTCPAFIGPDA  252 (295)
T ss_dssp             TSSS------------EEEEEEECTTSCEEEEEETTTEEEEECT-TC-CEEEEEECSCSBEEEEEEESTTS
T ss_pred             cccc------------cccceEEcCCCCEEeeeeCCCceEEecC-CC-cEeeEecCCCCceEEEEEeCCCC
Confidence            1000            0147889999998887777788999995 56 5566666555668888997 454

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=0.006  Score=50.53  Aligned_cols=174  Identities=11%  Similarity=-0.004  Sum_probs=96.4

Q ss_pred             CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC--eEEEE
Q 012721          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLV  295 (457)
Q Consensus       220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg--~i~lw  295 (457)
                      .+..+++..-+..|+.+  ..+.|.+.+++ ......+       .......+..++++|..+.++.+-...+  .|.--
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d-g~~~~~l-------~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~  151 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVL-------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecC-CceEEEE-------ecccccCCcEEEEecccCcEEEeecCCCCcEEEEe
Confidence            56788887655555544  77899999988 3333222       1222356789999998734443432222  34434


Q ss_pred             EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeE-eeeccccc
Q 012721          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVAT-FKIHEHLR  372 (457)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~-~~~~~~~~  372 (457)
                      ++......    .+...             .-.....+++++.++.|.-.+ . +.|...+++  +..... +.+...+ 
T Consensus       152 ~~dG~~~~----~i~~~-------------~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~--g~~~~~v~~~~~~P-  211 (263)
T d1npea_         152 HMDGTNRR----ILAQD-------------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA--QPGRRKVLEGLQYP-  211 (263)
T ss_dssp             ETTSCCCE----EEECT-------------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEEEEECCCSE-
T ss_pred             cCCCCCce----eeeee-------------cccccceEEEeecCcEEEEEeCCCCEEEEEECC--CCCeEEEECCCCCc-
Confidence            44432211    11111             113567899998888776654 3 888888885  332222 2222221 


Q ss_pred             cccccccCCCCccccceEEEcCCCcEEE-EEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721          373 PKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  438 (457)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~  438 (457)
                                     ..+++.  +.+|+ +-...+.|...|..+++...............++..++
T Consensus       212 ---------------~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         212 ---------------FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             ---------------EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             ---------------EEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence                           366664  34454 44456889889988884333333344444445555443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.72  E-value=0.003  Score=52.75  Aligned_cols=68  Identities=16%  Similarity=0.084  Sum_probs=40.8

Q ss_pred             CCCCeeEEEeCCCCCEEEEe--CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc
Q 012721          217 HDFNINSISNNSDCETFVSA--DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  287 (457)
Q Consensus       217 h~~~v~~~~~~~~~~~l~~~--~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~  287 (457)
                      +...+...+|+|||+.|+..  .+     ..|.+++.. .+...++...+ ..............|+|+| +.|+...
T Consensus        39 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~-~g~~~~lt~~~-~~~~~~~~~~~~~~~spdg-~~l~~~~  113 (281)
T d1k32a2          39 NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE-NGEIKRITYFS-GKSTGRRMFTDVAGFDPDG-NLIISTD  113 (281)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT-TTEEEECCCCC-EEEETTEECSEEEEECTTC-CEEEEEC
T ss_pred             CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec-CCceEEeeecC-CCccCccccccccccCCCC-CEEEEEE
Confidence            44567788999999999864  22     247777776 44444331110 0111222345678899999 7777653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.72  E-value=0.0043  Score=54.09  Aligned_cols=151  Identities=13%  Similarity=0.160  Sum_probs=90.1

Q ss_pred             EEEeC---CCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEec--CCccEEEEEccC------
Q 012721          223 SISNN---SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSR------  289 (457)
Q Consensus       223 ~~~~~---~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~l~~~~~d------  289 (457)
                      .+++.   +||+++++.  .+..|.+.|++ ..+..+++.++      ....+..+...+  +- .+++.++.+      
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~-~fkt~kIi~iP------n~~~~HG~r~~~~p~T-~YV~~~~e~~vP~pn  160 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRS-NYVFCNGEDETPLVN  160 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBC-SEEEEEECSCEESSC
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECc-ceeeeEEEecC------CCCCCceeecccCCCe-EEEEccCccccccCC
Confidence            45554   389999887  89999999999 66666665433      223455555544  33 466665542      


Q ss_pred             ------------CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec---C------
Q 012721          290 ------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---M------  348 (457)
Q Consensus       290 ------------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---~------  348 (457)
                                  +.+.++|..+.+...    ....              ......+.++++|+++++.+.   .      
T Consensus       161 dg~~l~d~~~y~~~~t~ID~~tm~V~~----QV~V--------------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e  222 (459)
T d1fwxa2         161 DGTNMEDVANYVNVFTAVDADKWEVAW----QVLV--------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPE  222 (459)
T ss_dssp             SSSSTTCGG-EEEEEEEEETTTTEEEE----EEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHH
T ss_pred             CCccccchhhcceEEEEEecCCceEEE----Eeee--------------CCChhccccCCCCCEEEEEeccccCCcchhh
Confidence                        235667777765331    1111              134567889999999887542   1      


Q ss_pred             -------cEEEEec-----------------------cC--CCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721          349 -------NLKLWDI-----------------------RM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (457)
Q Consensus       349 -------~i~~wd~-----------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~  396 (457)
                             .+.++++                       +.  ....+..+.....+                ..+.++|||
T Consensus       223 ~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsP----------------HGV~vSPDG  286 (459)
T d1fwxa2         223 MTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP----------------HGCNMAPDK  286 (459)
T ss_dssp             HTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSC----------------CCEEECTTS
T ss_pred             cccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCC----------------CceEECCCC
Confidence                   1333333                       11  00111112222221                579999999


Q ss_pred             cEEEEEeC-CCcEEEEecCC
Q 012721          397 LHFATGSY-SNLLRIFSHGV  415 (457)
Q Consensus       397 ~~l~s~~~-dg~i~iw~~~~  415 (457)
                      +++++++. +.++.|+|++.
T Consensus       287 Kyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         287 KHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             SEEEEECTTSSBEEEEEGGG
T ss_pred             CEEEEeCCcCCcEEEEEehh
Confidence            99887664 88999999863

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.03  Score=46.17  Aligned_cols=180  Identities=6%  Similarity=-0.048  Sum_probs=101.9

Q ss_pred             CCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEE-ccCCeEEE
Q 012721          218 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL  294 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~-~~dg~i~l  294 (457)
                      ...+..+++.+.+..|..+  ..+.|.+.+++ .......       ..........++++|....++.+. +..+.|.-
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~-g~~~~~~-------~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r  147 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  147 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE-------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecC-CceEEEE-------EcCCCCCcceEEEEcccCeEEEeccCCCcceeE
Confidence            3456678887756655554  77899999998 3333322       223345678999998652444443 23456666


Q ss_pred             EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccc
Q 012721          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLR  372 (457)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~  372 (457)
                      .++......    .+...             .-.....+++++.++.|.-++.  +.|...++.. ..............
T Consensus       148 ~~~dGs~~~----~l~~~-------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~~~~~~~  209 (266)
T d1ijqa1         148 GGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLA  209 (266)
T ss_dssp             EETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTS
T ss_pred             eccCCCcee----ccccc-------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCC-CCEEEEEeCCCccc
Confidence            666543211    11111             1234678999998887776543  8888888863 22222222222110


Q ss_pred             cccccccCCCCccccceEEEcCCCcEEEEE-eCCCcEEEEecCCCCceeeEEecC-CCcceeeeeccCC
Q 012721          373 PKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQAAP  439 (457)
Q Consensus       373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~p~~  439 (457)
                      .             ...+++.  +.+|.-. ..++.|+..+..+++. ...+... ..|..-..+||..
T Consensus       210 ~-------------p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~-~~~~~~~~~~p~~i~v~~~~~  262 (266)
T d1ijqa1         210 H-------------PFSLAVF--EDKVFWTDIINEAIFSANRLTGSD-VNLLAENLLSPEDMVLFHNLT  262 (266)
T ss_dssp             S-------------EEEEEEE--TTEEEEEETTTTEEEEEETTTCCC-CEEEECSCSCCCCEEEESGGG
T ss_pred             c-------------cEEEEEE--CCEEEEEECCCCeEEEEECCCCcc-eEEEEcCCCCceEEEEECCcc
Confidence            0             0356665  3344444 4678898888888844 3444443 4444455566654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.95  E-value=0.1  Score=45.31  Aligned_cols=32  Identities=16%  Similarity=0.421  Sum_probs=24.7

Q ss_pred             ceEEEEECCCCCEEEEEeCC-CeEEEEEecCCc
Q 012721           34 IVSAIEFDKTGDYLAVGDRG-GRVILFETVGGK   65 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg~~d-g~i~iw~~~~~~   65 (457)
                      .....++.++|++++.|+.+ ..+.+||..+..
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             ceeEEEEecCCcEEEeecCCCcceeEecCccCc
Confidence            34466788999999998655 579999987654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.73  E-value=0.15  Score=44.25  Aligned_cols=74  Identities=12%  Similarity=0.164  Sum_probs=47.1

Q ss_pred             ceEEEEEccCCCeEEEEec--CcEEEEeccCCCC-------ceeEeeeccccccccccccCCCCccccceEEEcCCCcEE
Q 012721          329 SISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  399 (457)
Q Consensus       329 ~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  399 (457)
                      ....+.++|||+|+++++.  .++.++|++.-..       +...+.+....  .          ..-+..+|...|.-.
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el--g----------lgPLht~fd~~g~ay  343 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL--G----------LGPLHTAFDGRGNAY  343 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC--C----------SCEEEEEECTTSEEE
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc--C----------cCccccccCCCceEE
Confidence            3567899999999998763  9999999963111       11111111000  0          011578898888655


Q ss_pred             EEEeCCCcEEEEecC
Q 012721          400 ATGSYSNLLRIFSHG  414 (457)
Q Consensus       400 ~s~~~dg~i~iw~~~  414 (457)
                      .|---|..|.-|++.
T Consensus       344 tslfids~v~kw~~~  358 (459)
T d1fwxa2         344 TSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEETTTTEEEEEEHH
T ss_pred             EEeeccceEEEEecc
Confidence            555579999999984

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.71  E-value=0.097  Score=42.97  Aligned_cols=155  Identities=9%  Similarity=0.107  Sum_probs=101.2

Q ss_pred             CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccc
Q 012721          237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES  316 (457)
Q Consensus       237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ...+|.|.|+.......+-           .-..-+.-.+|.. +.||.-+ ..++.+||+++.+..    +.+..    
T Consensus        43 ~~~~VvIidl~n~~~~~Rr-----------pi~AdsAIMhP~~-~IiALra-g~~LQiFnletK~kl----ks~~~----  101 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRR-----------PISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM----  101 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEE-----------ECCCSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEE----EEEEC----
T ss_pred             CCceEEEEECCCCCcceec-----------ccchhhhhcCCCC-cEEEEec-CCeEEEEehhHhhhh----ceEEc----
Confidence            3457888888743333221           1122344578987 7777765 668999999987543    22222    


Q ss_pred             cCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721          317 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  396 (457)
Q Consensus       317 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~  396 (457)
                                ...|.--.|-. .+.|+--++..|+-|+++....+.+.+..|....+.           .+..-..++|.
T Consensus       102 ----------~e~VvfWkWis-~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~-----------QIInY~~d~~~  159 (327)
T d1utca2         102 ----------TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGC-----------QIINYRTDAKQ  159 (327)
T ss_dssp             ----------SSCCCEEEESS-SSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTC-----------EEEEEEECTTS
T ss_pred             ----------CCCcEEEEecC-CCEEEEEcCCceEEEcccCCCCchhhhhhcccccCc-----------eEEEEEECCCC
Confidence                      23566666754 346666666899999997556788888877764321           23567778888


Q ss_pred             cEEEEEe---C----CCcEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721          397 LHFATGS---Y----SNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  436 (457)
Q Consensus       397 ~~l~s~~---~----dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~  436 (457)
                      ++++..+   .    .|.+.+|..+.+  ..+.++||.+....+...
T Consensus       160 kW~~l~GI~~~~~~i~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~  204 (327)
T d1utca2         160 KWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKME  204 (327)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEEEEEEECCT
T ss_pred             CEEEEEeEecCCCceeEEEEEEEeccC--cCccccceeeeeEEEEcC
Confidence            8877433   2    367899998855  788899997766666554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.44  E-value=0.18  Score=41.36  Aligned_cols=136  Identities=6%  Similarity=0.080  Sum_probs=76.3

Q ss_pred             CCeeEEEeCCCCCEEEE-e---C----CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEec--CCccEEEEEc-
Q 012721          219 FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSS-  287 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~l~~~~-  287 (457)
                      ..|.....+++.++++. |   .    .|.+.+|..+ .+ ..+.       +++|.+....+.+.-  ....+++.+. 
T Consensus       148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~-~sQ~-------ieGhaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RK-VSQP-------IEGHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TT-EEEE-------ECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-cC-cCcc-------ccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            35666677888888764 2   2    3678899988 33 3333       577766555554321  1113444443 


Q ss_pred             --cCCeEEEEEccCCeeec-c-ccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCce
Q 012721          288 --SRGFVRLVDMRQSALCD-H-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV  362 (457)
Q Consensus       288 --~dg~i~lwd~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~  362 (457)
                        ..+++++-++....... . ..+..+. ...|.      .-.+--.++..|+.-..+..-+. |.|++||+++ +.++
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi-~fppe------a~~DFPvamqvs~kygiiyviTK~G~i~lyDleT-gt~i  290 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI  290 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEEC-CCCTT------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEE-ECCcc------ccCCcEEEEEeeccCCEEEEEecCcEEEEEEccc-ccEE
Confidence              33678888886632110 0 0011111 01111      11233457788877667776655 9999999997 7887


Q ss_pred             eEeeecccc
Q 012721          363 ATFKIHEHL  371 (457)
Q Consensus       363 ~~~~~~~~~  371 (457)
                      ..-+.....
T Consensus       291 ~~nRIs~~~  299 (327)
T d1utca2         291 YMNRISGET  299 (327)
T ss_dssp             EEEECCSSC
T ss_pred             EEeecCCCc
Confidence            776655544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.40  E-value=0.25  Score=42.66  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=23.3

Q ss_pred             EEEEEecCCCCEEEEeeCC-CeEEEEEecccceeE
Q 012721          118 RVRWCAAPNGSMFILSTND-KTIKLWKVRDQKVKK  151 (457)
Q Consensus       118 ~v~~~~s~~~~~l~s~s~d-~~i~vw~~~~~~~~~  151 (457)
                      ...+  .+++.+++.|+.+ ..+.+||..+.....
T Consensus        80 ~~~~--~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~  112 (387)
T d1k3ia3          80 GISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIP  112 (387)
T ss_dssp             EEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred             EEEE--ecCCcEEEeecCCCcceeEecCccCcccc
Confidence            4455  5788888887654 689999988876543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.25  E-value=0.35  Score=42.70  Aligned_cols=33  Identities=21%  Similarity=0.436  Sum_probs=24.9

Q ss_pred             ceEEEEECCCCCEEEEE-----eCCCeEEEEEecCCcc
Q 012721           34 IVSAIEFDKTGDYLAVG-----DRGGRVILFETVGGKN   66 (457)
Q Consensus        34 ~V~~~~~s~~~~~latg-----~~dg~i~iw~~~~~~~   66 (457)
                      .+..+++|||++++|.+     +....|+++|+.+++.
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~  163 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE  163 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCccee
Confidence            45567899999999854     2234699999998874

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.04  E-value=0.36  Score=40.98  Aligned_cols=167  Identities=10%  Similarity=0.054  Sum_probs=88.1

Q ss_pred             eeEEEeCCCCCEEEEe-C------------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE--ecCCccEEEE
Q 012721          221 INSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLAY  285 (457)
Q Consensus       221 v~~~~~~~~~~~l~~~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~~~~l~~  285 (457)
                      .-.+...|+|..++++ .            .|.|.++|++........+...........-....+.+  .++|..+|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            3457778888777665 2            38899999874433332221111001111122344443  3445224444


Q ss_pred             Ec---cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec---------------
Q 012721          286 SS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---------------  347 (457)
Q Consensus       286 ~~---~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---------------  347 (457)
                      ..   ...+|.+|++............+..            ......+.+++..+|.++++-..               
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~------------~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~  184 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRH------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG  184 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECC------------TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTT
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCC------------ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhc
Confidence            32   4567888877644321111122211            11245788999999988887320               


Q ss_pred             -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE-eCCCcEEEEecCCC
Q 012721          348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVG  416 (457)
Q Consensus       348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~dg~i~iw~~~~~  416 (457)
                       +...+|..+. ++......+-...                ..++++||+++|+.+ +..++|++|++...
T Consensus       185 ~~~g~v~~~~~-~~~~~~~~~l~~p----------------NGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         185 LAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             CCCEEEEEECS-SCEEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCceeEEEEcC-CceEEEcCCCCcc----------------ceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence             2334454442 2222222222222                479999999877654 45788999998754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.43  Score=38.77  Aligned_cols=118  Identities=13%  Similarity=0.113  Sum_probs=66.2

Q ss_pred             CCeeEEEeCCCCCEEEEe--CCCe--EEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEE-EEEccCCeEE
Q 012721          219 FNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVR  293 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~dg~i~  293 (457)
                      .....++++|...+++..  ..+.  |.--+++ ......+.       ...-.....+++.+.+ +.| .+-...+.|.
T Consensus       122 ~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d-G~~~~~i~-------~~~~~~P~glaiD~~~-~~lYw~d~~~~~I~  192 (263)
T d1npea_         122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILA-------QDNLGLPNGLTFDAFS-SQLCWVDAGTHRAE  192 (263)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEE-------CTTCSCEEEEEEETTT-TEEEEEETTTTEEE
T ss_pred             cCCcEEEEecccCcEEEeecCCCCcEEEEecCC-CCCceeee-------eecccccceEEEeecC-cEEEEEeCCCCEEE
Confidence            356788898877666654  2223  4444555 22222221       1223456889999887 545 5545778899


Q ss_pred             EEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeEee
Q 012721          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFK  366 (457)
Q Consensus       294 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~  366 (457)
                      ..|+......    .+...              .....+|++.  +.+|...+ . +.|...|... ++....+.
T Consensus       193 ~~~~~g~~~~----~v~~~--------------~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~-g~~~~~~~  246 (263)
T d1npea_         193 CLNPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI-SKEMDTFH  246 (263)
T ss_dssp             EEETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEEEETTTTEEEEEETTT-TEEEEEEC
T ss_pred             EEECCCCCeE----EEECC--------------CCCcEEEEEE--CCEEEEEECCCCEEEEEECCC-CccceEEC
Confidence            9988765322    12222              0123467665  44555443 3 7788888764 55555443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.81  E-value=0.61  Score=35.83  Aligned_cols=154  Identities=14%  Similarity=0.036  Sum_probs=84.5

Q ss_pred             CCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc--CCCCceEEEEEecCCccEEEEEcc-CCeEEE
Q 012721          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPIYCNLLAYSSS-RGFVRL  294 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~l  294 (457)
                      ..|.++++. +.+..++| ......+|-++ .+...+..++++-.+-  -....|..+.+-..++.-+.++.. .|.+++
T Consensus       104 vRI~S~~yd-dk~vvF~Gased~~~LYvie-gGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri  181 (313)
T d2hu7a1         104 MRILSGVDT-GEAVVFTGATEDRVALYALD-GGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  181 (313)
T ss_dssp             BEEEEEEEC-SSCEEEEEECSSCEEEEEEE-TTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred             EEEEEeeec-CceEEEecccCCceEEEEEe-CCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence            356677765 45566677 77788888888 6666666554442221  112344555544433345555554 777777


Q ss_pred             EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEE--EEeccCCCCceeEeeeccc
Q 012721          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLK--LWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~--~wd~~~~~~~~~~~~~~~~  370 (457)
                      ++...+                            .++...+.+..+. +++-+  |.-+  -+|++.  .....+.-.+.
T Consensus       182 ~tpkeG----------------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s--~~yerve~P~k  230 (313)
T d2hu7a1         182 FDSGEG----------------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRD--GSVEDLELPSK  230 (313)
T ss_dssp             ECCSSE----------------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTT--CCEEECCCSSC
T ss_pred             ecCCCC----------------------------cccceeEccCcee-eeccCCCCceEEEEEeccc--CceeeeecCcc
Confidence            766553                            4666666776655 43311  3322  346553  33333322221


Q ss_pred             cccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721          371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  412 (457)
Q Consensus       371 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~  412 (457)
                      ....    |   ....++-+-+.||+++++.+-.||.-++|.
T Consensus       231 d~~s----y---~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         231 DFSS----Y---RPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             HHHH----H---CCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             ccee----e---cceEEEeeeeCCCCcEEEEEecCCchheee
Confidence            1100    0   000112345789999999999999999987

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.80  E-value=0.98  Score=38.18  Aligned_cols=159  Identities=8%  Similarity=0.073  Sum_probs=81.0

Q ss_pred             CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE--ecCCcc-EEEEEccCCeEEEEEccC---Ceeeccccccccc
Q 012721          239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMRQ---SALCDHSARILRD  312 (457)
Q Consensus       239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~~~-~l~~~~~dg~i~lwd~~~---~~~~~~~~~~~~~  312 (457)
                      .+|.+|.+......+..+.........-...+..+|+  ++..+. ++++...+|.+..|.+..   +......++.+..
T Consensus        99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~  178 (353)
T d1h6la_          99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM  178 (353)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC
T ss_pred             eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC
Confidence            3688888763333333221111111111234666776  554323 566677889998887643   2222223333433


Q ss_pred             cccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeE-eeec-c-ccccccccccCCCCccccc
Q 012721          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIH-E-HLRPKLCDLYNNDSIFDKF  388 (457)
Q Consensus       313 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~v~  388 (457)
                                    ...+..|.+......|..+.+ ..|..++++........ +..- . ...            .++-
T Consensus       179 --------------~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~------------~D~E  232 (353)
T d1h6la_         179 --------------NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLT------------PDIE  232 (353)
T ss_dssp             --------------SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCC------------SCEE
T ss_pred             --------------CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCcccc------------CCcc
Confidence                          356889999998888888865 44555555422111111 1111 1 111            1122


Q ss_pred             eEEE--cCC--CcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721          389 ECSV--SGD--GLHFATGSYSNLLRIFSHGVGSAGGITV  423 (457)
Q Consensus       389 ~~~~--s~d--~~~l~s~~~dg~i~iw~~~~~~~~~~~~  423 (457)
                      .++.  ..+  |-+|+|.-.+++..|||..+....+-.+
T Consensus       233 Glaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         233 GLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             EEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             ccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            4443  333  3344455568899999998753444333

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.64  E-value=1.3  Score=38.80  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=23.4

Q ss_pred             EEEEecCCCCEEEEe-----eCCCeEEEEEecccceeE
Q 012721          119 VRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKK  151 (457)
Q Consensus       119 v~~~~s~~~~~l~s~-----s~d~~i~vw~~~~~~~~~  151 (457)
                      ..+.++|++++++.+     +.-..+++.|+.+++.+.
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~  165 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP  165 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceecc
Confidence            344558999988853     334578999999987653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.98  E-value=2.7  Score=36.89  Aligned_cols=60  Identities=17%  Similarity=0.107  Sum_probs=41.0

Q ss_pred             CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC-cccCCCCceEEEEEecC
Q 012721          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPI  278 (457)
Q Consensus       218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~p~  278 (457)
                      -..-++|+|.|++++|++- ..|.|++++.. .+....+..+... ....-......|+++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~-~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECC-CCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3466799999999999998 68999999877 4444443332211 11222456789999996

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.79  E-value=3.4  Score=37.54  Aligned_cols=47  Identities=6%  Similarity=-0.098  Sum_probs=29.7

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcc
Q 012721          395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  441 (457)
Q Consensus       395 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  441 (457)
                      .+.++++|+.||.++-+|.++|+..-..--+....-..+.+..+|..
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            46678889999999999999995432222222222333455556654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.88  E-value=2.5  Score=38.54  Aligned_cols=59  Identities=12%  Similarity=0.067  Sum_probs=39.3

Q ss_pred             CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721          348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  424 (457)
Q Consensus       348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  424 (457)
                      |.+.-||+.+ ++.+-+.......                ..-..+-.+.+|++|+.||.++.+|..+|+ .+-.+.
T Consensus       457 G~l~AiD~~t-Gk~~W~~~~~~p~----------------~gg~lstagglVF~G~~dg~l~A~Da~TGe-~LW~~~  515 (573)
T d1kb0a2         457 GRLLAWDPVA-QKAAWSVEHVSPW----------------NGGTLTTAGNVVFQGTADGRLVAYHAATGE-KLWEAP  515 (573)
T ss_dssp             EEEEEEETTT-TEEEEEEEESSSC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEE
T ss_pred             ccEEEeCCCC-CceEeeecCCCCC----------------CCceEEEcCCEEEEECCCCeEEEEECCCCc-EeEEEE
Confidence            6778888876 6666555433321                112233467788899999999999999994 444433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.69  E-value=2.7  Score=33.82  Aligned_cols=122  Identities=11%  Similarity=0.029  Sum_probs=66.3

Q ss_pred             CCeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721          219 FNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw  295 (457)
                      .....++++|...+|...   ..+.|.-.+++ ......++       ...-.....+++.+.+..+..+-...+.|...
T Consensus       120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d-Gs~~~~l~-------~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~  191 (266)
T d1ijqa1         120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSI  191 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCcceEEEEcccCeEEEeccCCCcceeEeccC-CCceeccc-------ccccceeeEEEeeccccEEEEecCCcCEEEEE
Confidence            346778888855555543   34567667776 22222221       22335578899998873455555677899998


Q ss_pred             EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cCcEEEEeccCCCCceeEee
Q 012721          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFK  366 (457)
Q Consensus       296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~~~~~~~~~  366 (457)
                      |+......    .+...           ........++++.  +.+|...+  .+.|...+... +.....+.
T Consensus       192 ~~dG~~~~----~~~~~-----------~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~-g~~~~~~~  246 (266)
T d1ijqa1         192 DVNGGNRK----TILED-----------EKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT-GSDVNLLA  246 (266)
T ss_dssp             ETTSCSCE----EEEEC-----------TTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT-CCCCEEEE
T ss_pred             ECCCCCEE----EEEeC-----------CCcccccEEEEEE--CCEEEEEECCCCeEEEEECCC-CcceEEEE
Confidence            98664311    11111           0001224566666  34555443  27777777654 44444443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.30  E-value=4.9  Score=36.33  Aligned_cols=32  Identities=6%  Similarity=0.144  Sum_probs=24.2

Q ss_pred             CCCeEEEEe-cCcEEEEeccCCCCceeEeeeccc
Q 012721          338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH  370 (457)
Q Consensus       338 ~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~  370 (457)
                      .+.++++|+ ||.++.+|.++ ++.+-++.....
T Consensus       468 agglVF~G~~dg~l~A~Da~t-Ge~LW~~~l~~~  500 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADK-GEALWQFEAQSG  500 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred             CCCEEEEECCCCcEEEEECCC-CcEeEEEECCCC
Confidence            355677776 49999999987 888877776544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.88  E-value=5.6  Score=36.04  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=20.2

Q ss_pred             cEEEEEccCCeEEEEEccCCeee
Q 012721          281 NLLAYSSSRGFVRLVDMRQSALC  303 (457)
Q Consensus       281 ~~l~~~~~dg~i~lwd~~~~~~~  303 (457)
                      .++++|+.||.++-+|.++++.+
T Consensus       476 glVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         476 GLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEE
Confidence            57778999999999999999754

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.35  E-value=4.2  Score=31.07  Aligned_cols=156  Identities=10%  Similarity=0.079  Sum_probs=83.5

Q ss_pred             cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (457)
Q Consensus       115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (457)
                      .|.++++   .+.+...+|+......+|-++.|++..+...+.-.-|+++.=..--|.-+.... +...+.++.   +.+
T Consensus       105 RI~S~~y---ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~-~~sfF~adl---~SG  177 (313)
T d2hu7a1         105 RILSGVD---TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGG-RVSLFTSNL---SSG  177 (313)
T ss_dssp             EEEEEEE---CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETT-EEEEEEEET---TTE
T ss_pred             EEEEeee---cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCC-cceEEEEec---ccC
Confidence            4666666   455677777777778999999999888777665544443321111111111000 000111111   012


Q ss_pred             ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCC--eEEEEEcCCCcceeeeeecCCCcccC-CCCc
Q 012721          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDD-LTEV  269 (457)
Q Consensus       195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~  269 (457)
                      .+++.               ....+.++...+.+..+. +++  .-+  ...-+|++ .+. ..-++.+...+.. ..-.
T Consensus       178 ~lri~---------------tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~-s~~-yerve~P~kd~~sy~p~~  239 (313)
T d2hu7a1         178 GLRVF---------------DSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPR-DGS-VEDLELPSKDFSSYRPTA  239 (313)
T ss_dssp             EEEEE---------------CCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTT-TCC-EEECCCSSCHHHHHCCSE
T ss_pred             CEEEe---------------cCCCCcccceeEccCcee-eeccCCCCceEEEEEecc-cCc-eeeeecCcccceeecceE
Confidence            23333               445667777777776655 554  222  22244666 232 2222222211111 1234


Q ss_pred             eEEEEEecCCccEEEEEccCCeEEEEE
Q 012721          270 ITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (457)
Q Consensus       270 i~~v~~~p~~~~~l~~~~~dg~i~lwd  296 (457)
                      |+-+-+.|++ ++++.+-.||.-++|+
T Consensus       240 I~~~~Y~Pdd-~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         240 ITWLGYLPDG-RLAVVARREGRSAVFI  265 (313)
T ss_dssp             EEEEEECTTS-CEEEEEEETTEEEEEE
T ss_pred             EEeeeeCCCC-cEEEEEecCCchheee
Confidence            5666789999 9989999999999986

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.84  E-value=6.6  Score=32.72  Aligned_cols=73  Identities=5%  Similarity=-0.048  Sum_probs=44.1

Q ss_pred             CCeeEEEeCCCCCEEEEe---C-C------------CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccE
Q 012721          219 FNINSISNNSDCETFVSA---D-D------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  282 (457)
Q Consensus       219 ~~v~~~~~~~~~~~l~~~---~-d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~  282 (457)
                      ...+.+.+..++.+++|-   . +            ....+|..+ .+.....        ...-.....|+++|++..+
T Consensus       150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~-~~~~~~~--------~~~l~~pNGI~~s~d~~~l  220 (340)
T d1v04a_         150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-PNDVRVV--------AEGFDFANGINISPDGKYV  220 (340)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC-SSCEEEE--------EEEESSEEEEEECTTSSEE
T ss_pred             cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc-CCceEEE--------cCCCCccceeEECCCCCEE
Confidence            346777777777777762   1 1            233444444 2222211        1123457899999998445


Q ss_pred             EEEEccCCeEEEEEccCC
Q 012721          283 LAYSSSRGFVRLVDMRQS  300 (457)
Q Consensus       283 l~~~~~dg~i~lwd~~~~  300 (457)
                      +++-+..+.|+.|++...
T Consensus       221 yVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         221 YIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEEGGGTEEEEEEECTT
T ss_pred             EEEeCCCCeEEEEEeCCC
Confidence            555567889999998754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=84.17  E-value=15  Score=33.30  Aligned_cols=30  Identities=13%  Similarity=0.059  Sum_probs=23.4

Q ss_pred             cCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721          393 SGDGLHFATGSYSNLLRIFSHGVGSAGGITV  423 (457)
Q Consensus       393 s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~  423 (457)
                      +..+.+++.|+.||.++-+|..+|+ .+-.+
T Consensus       481 sTagglVF~G~~Dg~l~A~Da~TGe-~LW~~  510 (596)
T d1w6sa_         481 ATAGDLVFYGTLDGYLKARDSDTGD-LLWKF  510 (596)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCC-EEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCc-EeeEE
Confidence            3356788889999999999999994 44433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=80.88  E-value=14  Score=30.75  Aligned_cols=134  Identities=10%  Similarity=0.172  Sum_probs=71.5

Q ss_pred             CeeEEEe--CCC-CCE-EEEe-CCCeEEEEEcCCCcc-eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEE
Q 012721          220 NINSISN--NSD-CET-FVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (457)
Q Consensus       220 ~v~~~~~--~~~-~~~-l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~  293 (457)
                      .++.+|+  ++. +.. ++.. .+|.+..|.+...+. .+....+  ..+. -...+-.+.+.+.. ..|..+-++.-|.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lv--r~f~-~~~q~EGCVvDde~-~~LyisEE~~Giw  204 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKV--RAFK-MNSQTEGMAADDEY-GSLYIAEEDEAIW  204 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEE--EEEE-CSSCEEEEEEETTT-TEEEEEETTTEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEee--eccC-CCCccceEEEeCCC-CcEEEecCccceE
Confidence            3555665  664 544 3344 889999887742221 1111000  0111 22467788899887 7888888887676


Q ss_pred             EEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc--CCC-eEEEEe--cCcEEEEeccCCCCceeEeee
Q 012721          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQ-HLLSRD--YMNLKLWDIRMDSTPVATFKI  367 (457)
Q Consensus       294 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~-~l~s~~--~~~i~~wd~~~~~~~~~~~~~  367 (457)
                      .++..-.....  ...... ...       ......+..|+.-.  ++. ||++++  +++..+||.....+.+..+..
T Consensus       205 ~~~a~~~~~~~--~~~i~~-~~g-------~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i  273 (353)
T d1h6la_         205 KFSAEPDGGSN--GTVIDR-ADG-------RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI  273 (353)
T ss_dssp             EEESSTTSCSC--CEEEEE-CSS-------SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             EEEeccCCCcc--ceeeec-ccC-------ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence            66654221100  011110 000       01134566666543  333 666554  399999998765566767664