Citrus Sinensis ID: 012724

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARLHFNIQLLCLLRNFQVKDWVL
ccEEcccccccccHHHHHHccccEEEEEcccccccccccccccccccccccccccccEEEEcccEEEccEEEEccccccccccHHHHHcccccccccccccccEEEEEccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcEEEEEEEcccccccccEEEEcccccccccccccccccccEEEccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHcccccEEEEEcccccccHHHHHHHHHccccccEEEEEEEccccEEEEEEEcccccccccccEEEEEEcccccEEEEEEEEEcccccccEEEEEEEEEEEcccEEEEEEc
ccEEEEcccccccHHHHHcccccEEEEEccHccccccccccEEcccccEEEEccccEEEEcccEEEEcccEEcccHcccccccHHHHccccccccccccccccEEEEEcHHHHcccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEEccccccccccEEEEccccccccccHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHccccccccHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccccccHcccccccHHHcccccHHHHHHHHHHHHcccEEEEEEEcccccccHEccccccccccEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEcccEEEEcccccEEEccccccccccccccccEEEEEEEEccccccccEEEEEEEEEEHcccccEEEEcc
mavratvsrfpsdpdaqeasglpwgvtvtpfatkdengaapvygsdghmlprcenCYAYFNTYCELEQWAWtcslcgslnglSSQAIARYTHPQSCAEMISSFIdldlplegseeetmqarPVYVAAVDLSSSEEFLELTRSALQAALEavpsgalfglatfshkiglydvqgaipvvknvfipsdtedtLSLEledvmplsqflapvETFKENITSALetlrpttswertagaaqgldgvlmggRGFGLAMESLFNYLGSEYGNTFALARVFAFlsgppdhgagqldtrrygeqyaskgedadrallpeqtpfyKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLsiesggslflysstddstlpqdIYRMlsrpyafncimrlrtssefkpghsyghffpdpqyenvqhiiccdsyatyaydfdfanaagFARLHFNIQLLCLLrnfqvkdwvl
mavratvsrfpsdpdaqeasglpWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALetlrpttsweRTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARLHFNIQLLCLlrnfqvkdwvl
MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTcslcgslnglssQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARLHFNIQLLCLLRNFQVKDWVL
*********************LPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPL**********RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSG*****************************LPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARLHFNIQLLCLLRNFQVKDWV*
MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQ********************LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARLHFNIQLLCLLRNFQVKDWVL
******************ASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARLHFNIQLLCLLRNFQVKDWVL
*AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTR****QYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARLHFNIQLLCLLRNFQVKDWVL
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MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARLHFNIQLLCLLRNFQVKDWVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query457 2.2.26 [Sep-21-2011]
Q758M7 756 Protein transport protein yes no 0.877 0.530 0.25 1e-21
Q6CPH3 760 Protein transport protein yes no 0.809 0.486 0.264 7e-21
Q9USS7 891 Uncharacterized protein C yes no 0.789 0.405 0.242 2e-20
Q9SFU0 1038 Protein transport protein no no 0.805 0.354 0.233 8e-20
P15303 768 Protein transport protein yes no 0.805 0.479 0.259 5e-19
Q6BQT6 746 Protein transport protein yes no 0.783 0.479 0.262 8e-19
Q54U61 1013 Protein transport protein no no 0.774 0.349 0.234 3e-18
A6QNT8 1099 Protein transport protein yes no 0.792 0.329 0.255 4e-18
O95486 1093 Protein transport protein yes no 0.792 0.331 0.253 7e-18
A3GFA2 749 Protein transport protein yes no 0.754 0.460 0.264 1e-17
>sp|Q758M7|SEC23_ASHGO Protein transport protein SEC23 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC23 PE=3 SV=1 Back     alignment and function desciption
 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 195/488 (39%), Gaps = 87/488 (17%)

Query: 3   VRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAA---PVYGSDGHMLPRCENCYAY 59
           VR + + FP+       + +P G   TP    +E       PV     H       C A 
Sbjct: 12  VRFSWNVFPASRTDANKNVVPVGCLYTPLKEIEELAVVSYNPVVCGGPH-------CKAV 64

Query: 60  FNTYCELEQWA--WTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEET 117
            N YCE++  +  W C LCG+ N L  Q  A  +     AE+ S+ +      E      
Sbjct: 65  LNPYCEIDVRSNVWACPLCGTRNHLP-QHYANMSQEAMPAELNSTTV------EYITNRP 117

Query: 118 MQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPV 177
           +Q  P++   VD+++ EE L+  + ++  +L  +P  AL GL T+ + + L+D+      
Sbjct: 118 VQVAPIFFYVVDVTAEEENLQALKDSIITSLSLLPPNALVGLITYGNVVQLHDLSCTAID 177

Query: 178 VKNVFIPSDTEDTLSLELE-----------------DVMP--LSQFLAPVETFKENITSA 218
             NVF   D E  L   +E                  + P  L++F  P+E  +  +T  
Sbjct: 178 KCNVF-RGDREYQLQQLVEMLTGEKSGGNLSAGPQMKITPFSLNRFFLPLEHVEFKLTQL 236

Query: 219 LETLRPTTSWE--------RTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALA 270
           LE LRP   W         R  G+A  +  +L+ G    +A                  A
Sbjct: 237 LENLRP-DQWTIPPGHRPLRATGSALNIATLLLQGCYRHVA------------------A 277

Query: 271 RVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DADRALLPEQT-PFYKDLAAVAVQAGVC 328
           R+  F SGP     G + +    +   S  + D+D A   ++   FY  LA  A + G  
Sbjct: 278 RICLFASGPGTVAPGMIVSSELKDPLRSHHDIDSDNAKHHKKACKFYNQLAERAAENGHT 337

Query: 329 VDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAFNC 382
           +DIFA   +   ++ +K L+  +GG L L  +   +   Q   R+ S+        AFN 
Sbjct: 338 IDIFAGCYDQVGMSEMKKLTDSTGGVLLLTDAFSTAIFKQSFIRLFSKDEEGYLTMAFNA 397

Query: 383 IMRLRTSSEFKPGHSYGHFFP-DPQYENVQ------------HIICCDSYATYAYDFDFA 429
            M ++TS++ K     GH  P +   +NV              +     + +YA  F+ A
Sbjct: 398 SMCIKTSADLKLQGLIGHASPVNVDAQNVSDSEIGIGGTSTWKMASLSPHHSYAIFFEIA 457

Query: 430 NAAGFARL 437
           N A  A L
Sbjct: 458 NTAATASL 465
Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.
Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)
>sp|Q6CPH3|SEC23_KLULA Protein transport protein SEC23 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC23 PE=3 SV=1 Back     alignment and function description
>sp|Q9USS7|YNB3_SCHPO Uncharacterized protein C4.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4.03c PE=2 SV=1 Back     alignment and function description
>sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2 Back     alignment and function description
>sp|P15303|SEC23_YEAST Protein transport protein SEC23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC23 PE=1 SV=1 Back     alignment and function description
>sp|Q6BQT6|SEC23_DEBHA Protein transport protein SEC23 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SEC23 PE=3 SV=1 Back     alignment and function description
>sp|Q54U61|SEC24_DICDI Protein transport protein SEC24 OS=Dictyostelium discoideum GN=sec24 PE=3 SV=1 Back     alignment and function description
>sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1 Back     alignment and function description
>sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2 Back     alignment and function description
>sp|A3GFA2|SEC23_PICST Protein transport protein SEC23 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=SEC23 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
225464936 744 PREDICTED: protein transport protein Sec 0.954 0.586 0.853 0.0
147785809 746 hypothetical protein VITISV_037581 [Viti 0.954 0.584 0.853 0.0
359479507 760 PREDICTED: protein transport protein Sec 0.954 0.573 0.823 0.0
224131820 744 predicted protein [Populus trichocarpa] 0.954 0.586 0.860 0.0
255565655 740 expressed protein, putative [Ricinus com 0.945 0.583 0.876 0.0
359479509 740 PREDICTED: protein transport protein Sec 0.945 0.583 0.841 0.0
224104861 744 predicted protein [Populus trichocarpa] 0.954 0.586 0.853 0.0
297822415 745 sec23/sec24 transport family protein [Ar 0.954 0.585 0.827 0.0
449443450 742 PREDICTED: protein transport protein SEC 0.954 0.587 0.825 0.0
449521729 559 PREDICTED: protein transport protein Sec 0.954 0.779 0.825 0.0
>gi|225464936|ref|XP_002275292.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 1 [Vitis vinifera] gi|296084904|emb|CBI28313.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/436 (85%), Positives = 410/436 (94%)

Query: 1   MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYF 60
           MAVRAT+SRFP DPDAQE SGLPWGVTVTPFATKDENG +PVYGSDGH+LPRCENC+AYF
Sbjct: 1   MAVRATMSRFPMDPDAQEGSGLPWGVTVTPFATKDENGNSPVYGSDGHLLPRCENCWAYF 60

Query: 61  NTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQA 120
           NTYCELEQWAW CSLCG+LNGL+S+AI RY+ PQSCAEM+SSFIDL+LP+EGSE E MQA
Sbjct: 61  NTYCELEQWAWNCSLCGTLNGLTSEAITRYSQPQSCAEMMSSFIDLELPVEGSEGEAMQA 120

Query: 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKN 180
           RPVYVAA+DLSSSEEFLEL +S+L AALEA+  GALFGLATFSHKIGLYDVQG +PVVKN
Sbjct: 121 RPVYVAAIDLSSSEEFLELIKSSLLAALEALGPGALFGLATFSHKIGLYDVQGPVPVVKN 180

Query: 181 VFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDG 240
           VF+P+D++ +L +ELEDVMPL  FLAPVET K+ I SALETL+PTTSWERT+ A QGLDG
Sbjct: 181 VFVPADSDASLPIELEDVMPLLSFLAPVETCKDRIASALETLKPTTSWERTSAAGQGLDG 240

Query: 241 VLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKG 300
           +L+GGRGFG+AME+LFNYLGSEYG+TFALARVFAFLSGPPD+GAGQLDTRRYGEQYASKG
Sbjct: 241 ILLGGRGFGVAMEALFNYLGSEYGSTFALARVFAFLSGPPDYGAGQLDTRRYGEQYASKG 300

Query: 301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSS 360
           EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFA+TNEYTDLASLKFLSIESGGSLFLYS+
Sbjct: 301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGSLFLYSN 360

Query: 361 TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYA 420
           TDDSTLPQD+YRMLSRPYAF CI+RLRTSSEF+PG+SYGHFFPDPQYENVQHIICCDSY 
Sbjct: 361 TDDSTLPQDMYRMLSRPYAFGCILRLRTSSEFRPGNSYGHFFPDPQYENVQHIICCDSYV 420

Query: 421 TYAYDFDFANAAGFAR 436
           TYAYDFDFAN  GF+R
Sbjct: 421 TYAYDFDFANTTGFSR 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147785809|emb|CAN62128.1| hypothetical protein VITISV_037581 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479507|ref|XP_003632282.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131820|ref|XP_002328116.1| predicted protein [Populus trichocarpa] gi|222837631|gb|EEE75996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565655|ref|XP_002523817.1| expressed protein, putative [Ricinus communis] gi|223536905|gb|EEF38543.1| expressed protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359479509|ref|XP_003632283.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224104861|ref|XP_002313596.1| predicted protein [Populus trichocarpa] gi|222850004|gb|EEE87551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297822415|ref|XP_002879090.1| sec23/sec24 transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297324929|gb|EFH55349.1| sec23/sec24 transport family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449443450|ref|XP_004139490.1| PREDICTED: protein transport protein SEC24-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449521729|ref|XP_004167882.1| PREDICTED: protein transport protein Sec24-like At3g07100-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
TAIR|locus:2038633 745 AT2G27460 "AT2G27460" [Arabido 0.954 0.585 0.800 1.4e-192
DICTYBASE|DDB_G0271044 782 DDB_G0271044 "putative protein 0.256 0.149 0.313 9.5e-23
FB|FBgn0262126 1193 gho "ghost" [Drosophila melano 0.225 0.086 0.411 2.2e-15
TAIR|locus:2098545 1038 ERMO2 "AT3G07100" [Arabidopsis 0.800 0.352 0.226 5.4e-15
POMBASE|SPBC4.03c 891 SPBC4.03c "COPII-coated vesicl 0.371 0.190 0.269 1.7e-14
UNIPROTKB|E1BSP8 993 SEC24D "Uncharacterized protei 0.336 0.155 0.290 8.5e-14
TAIR|locus:2100202 1096 CEF "AT3G44340" [Arabidopsis t 0.323 0.135 0.289 1.6e-13
WB|WBGene00004755 1126 sec-24.1 [Caenorhabditis elega 0.280 0.113 0.318 2.9e-13
ZFIN|ZDB-GENE-030131-4487 1241 sec24c "SEC24 family, member C 0.336 0.124 0.296 4.4e-13
UNIPROTKB|E1BUD8 1119 SEC24C "Uncharacterized protei 0.275 0.112 0.292 8.4e-12
TAIR|locus:2038633 AT2G27460 "AT2G27460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1866 (661.9 bits), Expect = 1.4e-192, P = 1.4e-192
 Identities = 349/436 (80%), Positives = 386/436 (88%)

Query:     1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYF 60
             MAVRATVSRFP D DAQEASGLPWG+TVTPFA KDENG  P  GS+GH+LPRCENCYAYF
Sbjct:     1 MAVRATVSRFPIDSDAQEASGLPWGLTVTPFAAKDENGIGPACGSNGHLLPRCENCYAYF 60

Query:    61 NTYCELEQWAWTXXXXXXXXXXXXQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQA 120
             NTYCEL+QWAW              AIARY++P S  EM SSFIDL++PL+GSEEE  QA
Sbjct:    61 NTYCELDQWAWNCSLCGTLNGLPSDAIARYSNPHSIPEMTSSFIDLEMPLDGSEEEMTQA 120

Query:   121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKN 180
             RPVYVAA+D+SSSEEFLELT+SAL AALEA+  GALFGL TFSHKIGLYDVQG IPVVKN
Sbjct:   121 RPVYVAAIDISSSEEFLELTKSALLAALEALSPGALFGLVTFSHKIGLYDVQGPIPVVKN 180

Query:   181 VFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDG 240
             VFIP D E +LSLELEDVMPL QFLAPVET K+ I +ALETLRP TSWER+AGA QG+D 
Sbjct:   181 VFIPPDGESSLSLELEDVMPLLQFLAPVETCKDRIAAALETLRPITSWERSAGAGQGMDS 240

Query:   241 VLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKG 300
             VLMGGRGFG AME+LFNYLGSE+GNTFALARVFAFLSGPPD+G GQLDT RYGEQYASK 
Sbjct:   241 VLMGGRGFGTAMEALFNYLGSEFGNTFALARVFAFLSGPPDYGRGQLDTSRYGEQYASKR 300

Query:   301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSS 360
              DADRALLPEQTPFYKDLA +AVQ+GVCVD+FA+TNEYTDLASLKFLSIESGGSLFLYSS
Sbjct:   301 VDADRALLPEQTPFYKDLATIAVQSGVCVDLFAVTNEYTDLASLKFLSIESGGSLFLYSS 360

Query:   361 TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYA 420
             TDDSTLPQD++RML+RPYAFNC++RLRTS+EFKPG+S+GHFFPDPQYEN+QHIICCDSYA
Sbjct:   361 TDDSTLPQDMFRMLNRPYAFNCVLRLRTSTEFKPGNSFGHFFPDPQYENLQHIICCDSYA 420

Query:   421 TYAYDFDFANAAGFAR 436
             TYAYDF+FA+  GF+R
Sbjct:   421 TYAYDFEFADNTGFSR 436
GO:0005215 "transporter activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=ISS
GO:0030127 "COPII vesicle coat" evidence=IEA
DICTYBASE|DDB_G0271044 DDB_G0271044 "putative protein transport protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0262126 gho "ghost" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2098545 ERMO2 "AT3G07100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC4.03c SPBC4.03c "COPII-coated vesicle component Sfb3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|E1BSP8 SEC24D "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00004755 sec-24.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUD8 SEC24C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
cd01468239 cd01468, trunk_domain, trunk domain 7e-56
COG5028 861 COG5028, COG5028, Vesicle coat complex COPII, subu 8e-25
pfam04811241 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain 2e-24
COG5047 755 COG5047, SEC23, Vesicle coat complex COPII, subuni 3e-19
cd01479244 cd01479, Sec24-like, Sec24-like: Protein and membr 1e-17
cd01478267 cd01478, Sec23-like, Sec23-like: Protein and membr 3e-15
PLN00162 761 PLN00162, PLN00162, transport protein sec23; Provi 2e-13
pfam0481039 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger 5e-08
pfam0803386 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom 4e-04
>gnl|CDD|238745 cd01468, trunk_domain, trunk domain Back     alignment and domain information 
 Score =  185 bits (471), Expect = 7e-56
 Identities = 79/263 (30%), Positives = 121/263 (46%), Gaps = 33/263 (12%)

Query: 119 QARPVYVAAVDLSSS---EEFLELTRSALQAALEAVP--SGALFGLATFSHKIGLYDVQG 173
              PV+V  +D+S     E  L+  + +L A+L+ +P    A  GL T+   +  Y++  
Sbjct: 1   PQPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSS 60

Query: 174 AIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAG 233
            +   K +++ SD +D        +    +FL P+   K+ I   LE L P      T  
Sbjct: 61  DLAQPK-MYVVSDLKDVF------LPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPT-- 111

Query: 234 AAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYG 293
                       R  G A+++ F  L      TFA  R+  F  G P  G G+L +R   
Sbjct: 112 --------HRPERCLGPALQAAFLLLKG----TFAGGRIIVFQGGLPTVGPGKLKSREDK 159

Query: 294 EQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGG 353
           E   S     +  LL   T FYK LA   V++G+CVD+FA + +Y D+A+LK L+  +GG
Sbjct: 160 EPIRS---HDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGG 216

Query: 354 SLFLYSS----TDDSTLPQDIYR 372
            ++LY S     D S   QD+ R
Sbjct: 217 QVYLYDSFQAPNDGSKFKQDLQR 239

COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins. Length = 239
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain Back     alignment and domain information
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information
>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger Back     alignment and domain information
>gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 457
KOG1985 887 consensus Vesicle coat complex COPII, subunit SEC2 100.0
KOG1984 1007 consensus Vesicle coat complex COPII, subunit SFB3 100.0
PLN00162 761 transport protein sec23; Provisional 100.0
COG5028 861 Vesicle coat complex COPII, subunit SEC24/subunit 100.0
KOG1986 745 consensus Vesicle coat complex COPII, subunit SEC2 100.0
PTZ00395 1560 Sec24-related protein; Provisional 100.0
COG5047 755 SEC23 Vesicle coat complex COPII, subunit SEC23 [I 100.0
cd01479244 Sec24-like Sec24-like: Protein and membrane traffi 100.0
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 100.0
cd01468239 trunk_domain trunk domain. COPII-coated vesicles c 100.0
PF04811243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 100.0
PF0803396 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP 99.6
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 99.57
PRK13685326 hypothetical protein; Provisional 98.91
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 98.88
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 98.86
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 98.86
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 98.85
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 98.85
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 98.8
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 98.68
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 98.6
TIGR00868 863 hCaCC calcium-activated chloride channel protein 1 98.56
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 98.54
PF13768155 VWA_3: von Willebrand factor type A domain 98.53
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 98.52
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 98.52
cd01470198 vWA_complement_factors Complement factors B and C2 98.48
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 98.45
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 98.4
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 98.34
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 98.33
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 98.31
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 98.27
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 98.22
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 98.16
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 98.13
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 98.08
PRK13406584 bchD magnesium chelatase subunit D; Provisional 98.07
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 98.07
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 98.01
PTZ00441 576 sporozoite surface protein 2 (SSP2); Provisional 97.97
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 97.96
PF00092178 VWA: von Willebrand factor type A domain; InterPro 97.94
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 97.94
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 97.92
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 97.88
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 97.71
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 97.65
PF04056193 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro 97.63
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 97.54
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 97.53
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 97.51
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 97.24
KOG2884259 consensus 26S proteasome regulatory complex, subun 96.74
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 95.48
COG4245207 TerY Uncharacterized protein encoded in toxicity p 95.44
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 94.66
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 94.19
PF03850276 Tfb4: Transcription factor Tfb4; InterPro: IPR0046 93.86
KOG2807378 consensus RNA polymerase II transcription initiati 93.07
TIGR00578 584 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit 92.96
COG5148243 RPN10 26S proteasome regulatory complex, subunit R 91.92
KOG2353 1104 consensus L-type voltage-dependent Ca2+ channel, a 90.7
TIGR00627279 tfb4 transcription factor tfb4. This family is bas 90.55
PF00362426 Integrin_beta: Integrin, beta chain; InterPro: IPR 87.85
smart00187423 INB Integrin beta subunits (N-terminal portion of 86.67
COG2425437 Uncharacterized protein containing a von Willebran 85.18
PF06707205 DUF1194: Protein of unknown function (DUF1194); In 84.25
PF09967126 DUF2201: VWA-like domain (DUF2201); InterPro: IPR0 84.0
PF1005854 DUF2296: Predicted integral membrane metal-binding 83.76
PRK10997487 yieM hypothetical protein; Provisional 83.65
KOG3768 888 consensus DEAD box RNA helicase [General function 83.13
KOG2487314 consensus RNA polymerase II transcription initiati 81.19
PRK0039846 rpoP DNA-directed RNA polymerase subunit P; Provis 80.08
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-90  Score=711.33  Aligned_cols=416  Identities=31%  Similarity=0.526  Sum_probs=375.4

Q ss_pred             CeeecccCccCCCHHHHHhcCCceEEEEccCCCCCCCCCCCcccCCCCCCCCCcCcceEEecCceEeC--ceEEEccCCC
Q 012724            1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS   78 (457)
Q Consensus         1 ~~vR~T~~~~P~~~~~~~~~~lPlg~vv~Pf~~~~~~~~~p~~~~~~~~p~RC~~C~aYiNp~~~~~~--~~w~C~~C~~   78 (457)
                      +++|+|++++|.+.+++++++||||++|+||++..+.+..|  ......|+||++||+|||||+.|++  ++|+||+|+.
T Consensus       171 ~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~d~~~~p--~~~~~~IvRCr~CRtYiNPFV~fid~gr~WrCNlC~~  248 (887)
T KOG1985|consen  171 SYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLDDIDPLP--VITSTLIVRCRRCRTYINPFVEFIDQGRRWRCNLCGR  248 (887)
T ss_pred             HHHHHHHHhCCccHHHHHhcCCCceEEEeecccccccCCCC--cccCCceeeehhhhhhcCCeEEecCCCceeeechhhh
Confidence            47999999999999999999999999999999876322223  3357789999999999999999984  7999999999


Q ss_pred             CCCCChhhhcc-----cCCCCCccccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHHh
Q 012724           79 LNGLSSQAIAR-----YTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEA  150 (457)
Q Consensus        79 ~N~v~~~y~~~-----~~~~~~~pEL~~~~ve~~~~~~~~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~  150 (457)
                      .|++|.+|..+     |.+..+||||++.+|||++|.||+.++  ++|++|||+||||.++   |+|++++++|+..||.
T Consensus       249 ~NdvP~~f~~~~~t~~~~~~~~RpEl~~s~vE~iAP~eYmlR~--P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~  326 (887)
T KOG1985|consen  249 VNDVPDDFDWDPLTGAYGDPYSRPELTSSVVEFIAPSEYMLRP--PQPAVYVFLIDVSISAIKSGYLETVARSLLENLDA  326 (887)
T ss_pred             hcCCcHHhhcCccccccCCcccCccccceeEEEecCcccccCC--CCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhc
Confidence            99999987644     566888999999999999999999875  4789999999999975   8999999999999999


Q ss_pred             CC--CCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc-cccc-cccccchHhHHHHHHHHHHhcCCCC
Q 012724          151 VP--SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALETLRPTT  226 (457)
Q Consensus       151 l~--~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~-~~p~-~~~l~~~~~~~~~i~~~l~~l~~~~  226 (457)
                      ||  +++||||||||++||||++..+..++.+         .+++|++| ++|. +++|+|+++||+.|..+|+.|++++
T Consensus       327 lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~m---------m~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F  397 (887)
T KOG1985|consen  327 LPGDPRTRIGFITFDSTIHFYSVQGDLNQPQM---------MIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMF  397 (887)
T ss_pred             CCCCCcceEEEEEeeceeeEEecCCCcCCCce---------eeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHH
Confidence            99  7899999999999999999887755555         35678888 4554 7899999999999999999999999


Q ss_pred             CcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEecCCCCCCCCccccccccCccCCCCcccccc
Q 012724          227 SWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRA  306 (457)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~  306 (457)
                      .+++.            .++|+|+||++|.++|+..|      |||++|.+++||.|.|+|+.||+.+..   +++++..
T Consensus       398 ~~~~~------------t~~alGpALkaaf~li~~~G------Gri~vf~s~lPnlG~G~L~~rEdp~~~---~s~~~~q  456 (887)
T KOG1985|consen  398 QDTRS------------TGSALGPALKAAFNLIGSTG------GRISVFQSTLPNLGAGKLKPREDPNVR---SSDEDSQ  456 (887)
T ss_pred             hhccC------------cccccCHHHHHHHHHHhhcC------CeEEEEeccCCCCCccccccccccccc---cchhhhh
Confidence            88764            46899999999999999887      799999999999999999999765543   4567788


Q ss_pred             CCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEEEeCCCCCC------cHHHHHHHHhccCcce
Q 012724          307 LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS------TLPQDIYRMLSRPYAF  380 (457)
Q Consensus       307 ~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~------~l~~dl~~~l~~~~~~  380 (457)
                      ++.++++|||+||.+|.+.+|+||+|+++.+|.|+|+|+.|++.|||.+|||++|+..      +|.+||.|+|+|++||
T Consensus       457 lL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f~~s~p~~~~Kf~~el~r~Ltr~~~f  536 (887)
T KOG1985|consen  457 LLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSFDGSNPHDVLKFARELARYLTRKIGF  536 (887)
T ss_pred             ccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEccCCCCCCHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999999999765      6999999999999999


Q ss_pred             eeEEEEEcCCCeeEeEeeeccccCCCCCCceEEeeeCCCceEEEEEEEecCCCCCCceeEEEEEEeeecCCCcc
Q 012724          381 NCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARLHFNIQLLCLLRNFQVKD  454 (457)
Q Consensus       381 ~~~lrvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~iQ~~~~y~~~~~~~  454 (457)
                      ||+||||||+|++++.+||||+.++  .+++.++++.+|++++|.+++++  .+.....++|.|++||...|+.
T Consensus       537 eaVmRiR~S~gl~~~~f~GnFF~RS--tDLla~~~v~~D~sy~~qisiEe--sl~~~~~~fQvAlLyT~~~GER  606 (887)
T KOG1985|consen  537 EAVMRIRCSTGLRMSSFFGNFFVRS--TDLLALPNVNPDQSYAFQISIEE--SLTTGFCVFQVALLYTLSKGER  606 (887)
T ss_pred             heeEEeeccccccccceecccccCc--HHHhcccCCCCCccceEEEEeeh--hcCCceeEEEeeeeecccCCce
Confidence            9999999999999999999999986  78999999999999999999964  4677888899999999998874

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair Back     alignment and domain information
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) Back     alignment and domain information
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00627 tfb4 transcription factor tfb4 Back     alignment and domain information
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] Back     alignment and domain information
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) Back     alignment and domain information
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length Back     alignment and domain information
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function Back     alignment and domain information
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [] Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information
>KOG3768 consensus DEAD box RNA helicase [General function prediction only] Back     alignment and domain information
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
1m2o_A 768 Crystal Structure Of The Sec23-Sar1 Complex Length 3e-15
2qtv_A 772 Structure Of Sec23-Sar1 Complexed With The Active F 3e-15
3egd_B 748 Crystal Structure Of The Mammalian Copii-Coat Prote 4e-15
2nup_B 753 Crystal Structure Of The Human Sec23a24A HETERODIME 4e-15
3eh1_A 751 Crystal Structure Of The Human Copii-Coat Protein S 5e-15
1pcx_A 810 Crystal Structure Of The Copii Coat Subunit, Sec24, 6e-14
1m2v_B 926 Crystal Structure Of The Yeast Sec2324 HETERODIMER 1e-13
3eh2_A 766 Crystal Structure Of The Human Copii-Coat Protein S 4e-13
2nup_A 769 Crystal Structure Of The Human Sec23a24A HETERODIME 5e-11
3eg9_A 764 Crystal Structure Of The Mammalian Copii-Coat Prote 6e-11
3efo_A 765 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-10
3efo_B 770 Crystal Structure Of The Mammalian Copii-Coat Prote 6e-09
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 Back     alignment and structure 
Iteration: 1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 166/440 (37%), Gaps = 71/440 (16%)
Query: 2   AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAP---VYGSDGHMLPRCENCYA 58
            VR T + FPS      ++ +P G   TP    DE   AP   V  S  H       C +
Sbjct: 11  GVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPH-------CKS 63
Query: 59  YFNTYCELE--QWAWTXXXXXXXXXXXXQAIARYTHPQSCAEMISSFIDLDLPLEGSEEE 116
             N YC ++    +W+            Q    YT+         S  ++ L L+ +  E
Sbjct: 64  ILNPYCVIDPRNSSWSCPICNSRNHLPPQ----YTN--------LSQENMPLELQSTTIE 111
Query: 117 TMQARPVYVA-----AVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDV 171
            +  +PV V       VDL+S  E L+  + ++  +L  +P  AL GL T+ + + L+D+
Sbjct: 112 YITNKPVTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDL 171
Query: 172 QGAIPVVKNVFI---------------------PSDTEDTLSLELEDVMP--LSQFLAPV 208
                   NVF                      P      L   +  V P  L++F  P+
Sbjct: 172 SSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPL 231
Query: 209 ETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFA 268
           E  +  +   LE L P   W   AG         +   G  L + SL   L   Y N   
Sbjct: 232 EQVEFKLNQLLENLSP-DQWSVPAGHRP------LRATGSALNIASLL--LQGCYKNI-- 280
Query: 269 LARVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DADRAL-LPEQTPFYKDLAAVAVQAG 326
            AR+  F SGP     G +      +   S  + D+D A    +   FY  +A      G
Sbjct: 281 PARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANG 340
Query: 327 VCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAF 380
             VDIFA   +   ++ +K L+  +GG L L  +   +   Q   R+ ++        AF
Sbjct: 341 HTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAF 400
Query: 381 NCIMRLRTSSEFKPGHSYGH 400
           N  M ++TS + K     GH
Sbjct: 401 NGNMAVKTSKDLKVQGLIGH 420
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 Back     alignment and structure
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 Back     alignment and structure
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 Back     alignment and structure
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 Back     alignment and structure
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 Back     alignment and structure
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 Back     alignment and structure
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 Back     alignment and structure
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 Back     alignment and structure
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 Back     alignment and structure
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 Back     alignment and structure
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-68
2nut_A 769 Protein transport protein SEC23A; human copii SEC2 3e-68
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zi 2e-64
3eh2_A 766 Protein transport protein SEC24C; copii-coat prote 2e-60
3efo_B 770 SEC24 related gene family, member D; copii, coat p 1e-59
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomy 2e-58
3eh1_A 751 Protein transport protein SEC24B; copii coat prote 1e-54
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
 Score =  233 bits (595), Expect = 2e-68
 Identities = 85/453 (18%), Positives = 163/453 (35%), Gaps = 37/453 (8%)

Query: 3   VRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNT 62
           +R+T++  P +    + S LP+G+ + P+    ++   P    DG +  RC  C +Y N 
Sbjct: 182 IRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI-VRCRRCRSYMNP 240

Query: 63  YCELEQWA--WTCSLCGSLNGLSSQAIARYTH----PQSCAEMISSFIDLDLPLEGSEEE 116
           +    +    W C+ C   N +  Q      +         E+  + ++   P E +  +
Sbjct: 241 FVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQ 300

Query: 117 TMQARPVYVAAVDLSSSE-EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQ 172
              A   ++  V  SS +   L  T + L   L+++P         +    + I  + + 
Sbjct: 301 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 360

Query: 173 GAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTA 232
                 +      +  D   LE   +   +  +  ++  ++NI + L  +          
Sbjct: 361 LDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLIT 420

Query: 233 GAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRY 292
             A             G A++S ++ +G   G      ++       P+ G G+L  R  
Sbjct: 421 NFA------------LGPALKSAYHLIGGVGG------KIIVVSGTLPNLGIGKLQRRNE 462

Query: 293 GEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESG 352
                +  E A   LL  Q  FYK+      +  + VD+F  + +Y D+ASL  LS  + 
Sbjct: 463 SGVVNTSKETA--QLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTA 520

Query: 353 GSLFLYSS------TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQ 406
           G    Y         D      +  + +S  +    +MR R S+  +    YGHFF    
Sbjct: 521 GQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSS 580

Query: 407 YENVQHIICCDSYATYAYDFDFANAAGFARLHF 439
                  +  D    +  + D +  A +  +  
Sbjct: 581 DLCAFSTMPRDQSYLFEVNVDESIMADYCYVQV 613
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
3eh1_A 751 Protein transport protein SEC24B; copii coat prote 100.0
3eh2_A 766 Protein transport protein SEC24C; copii-coat prote 100.0
3efo_B 770 SEC24 related gene family, member D; copii, coat p 100.0
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 100.0
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomy 100.0
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zi 100.0
2nut_A 769 Protein transport protein SEC23A; human copii SEC2 100.0
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 99.46
4fx5_A 464 VON willebrand factor type A; structural genomics, 99.24
3ibs_A218 Conserved hypothetical protein BATB; structural ge 98.98
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 98.77
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 98.73
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 98.64
2b2x_A223 Integrin alpha-1; computational design, antibody-a 98.64
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 98.57
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 98.55
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 98.55
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 98.54
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 98.54
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 98.53
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 98.51
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 98.51
2odp_A 509 Complement C2; C3/C5 convertase, complement serin 98.51
1rrk_A 497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 98.43
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 98.41
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 98.41
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 98.38
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 98.35
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 98.24
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 98.11
3hrz_D 741 Complement factor B; serine protease, glycosilated 98.1
1jey_B 565 KU80; double-strand DNA break repair, non-homologo 97.93
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 97.79
3fcs_B 690 Integrin beta-3; beta propeller, rossmann fold, EG 96.12
2ww8_A 893 RRGA, cell WALL surface anchor family protein; IGG 95.94
1jey_A 609 KU70; double-strand DNA break repair, non-homologo 95.93
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 95.55
3t3p_B472 Integrin beta-3; integrin, cell adhesion, blood cl 95.11
3rag_A242 Uncharacterized protein; structural genomics, PSI- 94.85
2nvo_A535 RO sixty-related protein, RSR; alpha helical repea 92.51
3vi3_B454 Integrin beta-1; beta propeller fold, rossman fold 92.46
3v4v_B503 Integrin beta-7; cell adhesion, madcam-1, membrane 89.9
3k6s_B 687 Integrin beta-2; cell receptor, adhesion molecule, 87.42
2iue_A212 Pactolus I-domain; membrane protein, CD, ITC, limb 84.17
2a20_A62 Regulating synaptic membrane exocytosis protein 2; 82.84
3rag_A242 Uncharacterized protein; structural genomics, PSI- 81.76
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
Probab=100.00  E-value=4.6e-91  Score=754.33  Aligned_cols=413  Identities=24%  Similarity=0.414  Sum_probs=365.0

Q ss_pred             eeecccCccCCCHHHHHhcCCceEEEEccCCCCCCCCCCCcccCCCCCCCCCcCcceEEecCceEe-CceEEEccCCCCC
Q 012724            2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELE-QWAWTCSLCGSLN   80 (457)
Q Consensus         2 ~vR~T~~~~P~~~~~~~~~~lPlg~vv~Pf~~~~~~~~~p~~~~~~~~p~RC~~C~aYiNp~~~~~-~~~w~C~~C~~~N   80 (457)
                      +||+|||+||.+++++++++||||++|+||++..+   +|++.  ..+|+||++|||||||||+|. +++|+||||+..|
T Consensus        42 ~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~---~P~v~--~~~p~RC~rCrayiNPf~~f~~~~~w~Cn~C~~~N  116 (751)
T 3eh1_A           42 SFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQ---LPVIT--SNTIVRCRSCRTYINPFVSFIDQRRWKCNLCYRVN  116 (751)
T ss_dssp             TEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSC---CCEEC--CSCCCBCTTTCCBCCTTCEESSSSEEECTTTCCEE
T ss_pred             eEEeecccCCCCHHHHHhCCCCeEEEEecCCcCCC---CCccC--CCCCCcccCccCEeCCceEEecCCEEEcccccCCC
Confidence            69999999999999999999999999999998653   45543  457999999999999999984 5899999999999


Q ss_pred             CCChhhhc-----ccCCCCCccccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHHhCC
Q 012724           81 GLSSQAIA-----RYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEAVP  152 (457)
Q Consensus        81 ~v~~~y~~-----~~~~~~~~pEL~~~~ve~~~~~~~~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~l~  152 (457)
                      ++|++|..     ++.+.++||||++|+|||++|++|..++  +.||+|+||||+|..+   |++++++++|+++|+.||
T Consensus       117 ~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~--p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp  194 (751)
T 3eh1_A          117 DVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLRP--PQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLP  194 (751)
T ss_dssp             ECCGGGC---------CGGGSHHHHCSEEEEEECGGGCSSS--CCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSS
T ss_pred             CCCHHHhcccccccccCcccCchhccceEEEEcChhhhcCC--CCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcC
Confidence            99999842     2335678999999999999999998653  5799999999999865   779999999999999999


Q ss_pred             CCc--EEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc-cccc-cccccchHhHHHHHHHHHHhcCCCCCc
Q 012724          153 SGA--LFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALETLRPTTSW  228 (457)
Q Consensus       153 ~~~--~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~-~~p~-~~~l~~~~~~~~~i~~~l~~l~~~~~~  228 (457)
                      ++.  +|||||||+.||||+++.+..+++++         ++.|++| ++|+ ++||+|++|+++.|+++|++|+.++.+
T Consensus       195 ~~~~~~VG~ITfd~~vh~y~l~~~~~~~qml---------vv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~  265 (751)
T 3eh1_A          195 GDSRTRIGFMTFDSTIHFYNLQEGLSQPQML---------IVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTN  265 (751)
T ss_dssp             CCTTCEEEEEEESSSEEEEECCTTCSSCEEE---------EESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTT
T ss_pred             CCcCcEEEEEEeCCEEEEEECCCCcccceee---------ccccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcC
Confidence            855  99999999999999999876655553         4568888 4677 689999999999999999999887543


Q ss_pred             ccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEecCCCCCCCCccccccccCccCCCCccccccCC
Q 012724          229 ERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALL  308 (457)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      ..            ++.+|+|+||++|..+|+..|      |||++|++|+||.|||+|+.|++.+. +  ++++|+.++
T Consensus       266 ~~------------~~~~~~G~AL~aA~~ll~~~G------GrI~~F~sg~pt~GpG~l~~r~~~~~-~--~~~ke~~~~  324 (751)
T 3eh1_A          266 TR------------ETHSALGPALQAAFKLMSPTG------GRVSVFQTQLPSLGAGLLQSREDPNQ-R--SSTKVVQHL  324 (751)
T ss_dssp             CS------------CCCCCHHHHHHHHHHHHTTTC------EEEEEEECSCCCSSTTCCCCCCCSCG-G--GGSSSCTTC
T ss_pred             CC------------CCccchHHHHHHHHHHhhcCC------CEEEEEecCCCCCCCCcccccccccc-C--CCchhhhhh
Confidence            32            367999999999999998764      89999999999999999999886653 3  234567899


Q ss_pred             CcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEEEeCCCCCC-------cHHHHHHHHhccCccee
Q 012724          309 PEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS-------TLPQDIYRMLSRPYAFN  381 (457)
Q Consensus       309 ~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~-------~l~~dl~~~l~~~~~~~  381 (457)
                      +++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+       +|.+||+|.|++++||+
T Consensus       325 ~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~  404 (751)
T 3eh1_A          325 GPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFE  404 (751)
T ss_dssp             SCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEE
T ss_pred             cchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHHhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999753       79999999999999999


Q ss_pred             eEEEEEcCCCeeEeEeeeccccCCCCCCceEEeeeCCCceEEEEEEEecCCCCC-CceeEEEEEEeeecCCCccc
Q 012724          382 CIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFA-RLHFNIQLLCLLRNFQVKDW  455 (457)
Q Consensus       382 ~~lrvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-~~~~~iQ~~~~y~~~~~~~~  455 (457)
                      |+||||||+||+|++++||++.++  .+.|.++.+|++++|+|+|++++  ++. ...+|||++++||+.+|+-.
T Consensus       405 a~mrVR~S~glkv~~~~G~~~~~~--t~~~~l~~i~~d~s~~v~~~~~~--~l~~~~~~~~Q~allYT~~~G~RR  475 (751)
T 3eh1_A          405 AVMRIRCTKGLSMHTFHGNFFVRS--TDLLSLANINPDAGFAVQLSIEE--SLTDTSLVCFQTALLYTSSKGERR  475 (751)
T ss_dssp             EEEEEEECTTEEEEEEESSSEECS--SSEEEEEEECTTCCEEEEEEESS--CCCSCSEEEEEEEEEEECTTSCEE
T ss_pred             eEEEEEecCCeEEEEeeCCeEeCC--CCceEeccCCCCCEEEEEEEEcC--CCCCCCceEEEEEEeeecCCCCEE
Confidence            999999999999999999999875  67899999999999999999964  453 57899999999999998754
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Back     alignment and structure
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Back     alignment and structure
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Back     alignment and structure
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Back     alignment and structure
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* Back     alignment and structure
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Back     alignment and structure
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Back     alignment and structure
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 457
d2qtva3271 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar 2e-52
d1pd0a3252 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar 9e-42
d1pd0a2177 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast 2e-09
d1pd0a585 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha 4e-05
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  175 bits (446), Expect = 2e-52
 Identities = 64/280 (22%), Positives = 101/280 (36%), Gaps = 36/280 (12%)

Query: 122 PVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNV 181
           P++   VDL+S  E L+  + ++  +L  +P  AL GL T+ + + L+D+        NV
Sbjct: 3   PIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNV 62

Query: 182 FIPSDTEDTLSLE---------------------LEDVMPLSQ--FLAPVETFKENITSA 218
           F         +L                      +  V P S   F  P+E  +  +   
Sbjct: 63  FRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQL 122

Query: 219 LETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSG 278
           LE L P   W   AG            R  G A+      L   Y N  A  R+  F SG
Sbjct: 123 LENLSPD-QWSVPAGH--------RPLRATGSALNIASLLLQGCYKNIPA--RIILFASG 171

Query: 279 PPDHGAGQLDTRRYGEQYASK--GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN 336
           P     G +      +   S    +        +   FY  +A      G  VDIFA   
Sbjct: 172 PGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCY 231

Query: 337 EYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR 376
           +   ++ +K L+  +GG L L  +   +   Q   R+ ++
Sbjct: 232 DQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 271
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d1pd0a3252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d1pd0a585 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.85
d2qtva575 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.77
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.64
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.19
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 98.37
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 98.31
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 98.28
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 98.26
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 98.25
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 98.24
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 98.15
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 98.14
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 98.1
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 97.97
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 97.92
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 97.84
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 97.72
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 97.23
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 96.54
d2akla238 Hypothetical protein PA0128, N-terminal domain {Ps 80.58
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-48  Score=374.07  Aligned_cols=245  Identities=26%  Similarity=0.389  Sum_probs=204.6

Q ss_pred             CcEEEEEEECCCChhHHHHHHHHHHHHHHhCCCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCC-------------
Q 012724          121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDT-------------  187 (457)
Q Consensus       121 ~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~-------------  187 (457)
                      ||+||||||+|.++..++.++++|+++|+.+|++++|||||||++||||+++.......+|+.+...             
T Consensus         2 Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~~~~~   81 (271)
T d2qtva3           2 PPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQ   81 (271)
T ss_dssp             CCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECSCSSCCEEEEEESSSCCCHHHHHHHHHCC
T ss_pred             CCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCcCccceeccCccccCHHHHHHHhhcc
Confidence            8999999999999999999999999999999999999999999999999998776555566543211             


Q ss_pred             --------Ccccccccccc-ccc-cccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHH
Q 012724          188 --------EDTLSLELEDV-MPL-SQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFN  257 (457)
Q Consensus       188 --------~~~v~~dl~~~-~p~-~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~  257 (457)
                              ...++.|++++ .|. ++||+|++++++.|+++|++|++. .+..+.+        .++.||+|+||.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~-~~~~~~~--------~~~~~~~G~Al~~A~~  152 (271)
T d2qtva3          82 KPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPD-QWSVPAG--------HRPLRATGSALNIASL  152 (271)
T ss_dssp             C-----------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCC-CCCCCTT--------BCCCCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccCCccccccccHHHHHHHHHHHHHHhccC-cccCCCC--------CCcccchHHHHHHHHH
Confidence                    01234556663 344 689999999999999999999875 3333322        2478999999999999


Q ss_pred             hhccccCCCccccEEEEEecCCCCCCCCccccccccCccCCCCc-c-ccccCCCcchHHHHHHHHHHHHcceEEEEeeec
Q 012724          258 YLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-D-ADRALLPEQTPFYKDLAAVAVQAGVCVDIFAIT  335 (457)
Q Consensus       258 lL~~~~~~~~~~gkIi~f~~g~pt~GpG~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~  335 (457)
                      +|++..++  .||||++|++|+||.|||+|+.+++++.+|++.+ + .+..+++++++||++||.+|+++||+||+|+++
T Consensus       153 ll~~~~~~--~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s  230 (271)
T d2qtva3         153 LLQGCYKN--IPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGC  230 (271)
T ss_dssp             HHHHHCTT--SCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             HHHhhccC--CCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEec
Confidence            99853211  1599999999999999999999999999998653 3 345688999999999999999999999999999


Q ss_pred             CCccCccccccccccCccEEEEeCCCCCCcHHHHHHHHhcc
Q 012724          336 NEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR  376 (457)
Q Consensus       336 ~~~~~l~~l~~l~~~TGG~v~~~~~~~~~~l~~dl~~~l~~  376 (457)
                      .+++|+++|++|++.|||.+++|++|+.+.|+++|+|+|.|
T Consensus       231 ~~~~dl~~l~~l~~~TGG~v~~~~~F~~~~f~~~l~r~~~r  271 (271)
T d2qtva3         231 YDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK  271 (271)
T ss_dssp             SSCCSHHHHTHHHHTTTCCEEEESCTTSHHHHHHHHHTTCB
T ss_pred             CccCChHHHHhHHhhCCceEEEeCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999976
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure