Citrus Sinensis ID: 012736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
Protein Sequence
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Secondary Structure (PSIPRED)
cEEEEEcccccEEEEEEEccccHHHHHHHHHHHHcccccccEEEEccEEccccccccccccccccEEEEEEEEcccEEEEEEEccccEEEEcccccccHHHHHHHHHHHccccccccEEEcccEEccccccccccccccccEEEEEEEEcccEEEEEEcccccEEEEccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHEEEEEcccEEEEEEcccccEEEEEccccccHHHHHHHHHHHHccccccEEEEEccEEccccccccccccccccEEEEEEEEcccEEEEEEEccccEEEEcccccccHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEcccccEEEEEcccccHHHHHHHHHHHccccccccEEEEEccEEccccccccccccccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
MQIFVKTltgktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGF
Flexible Loop (DISEMBL)
mqifvktltgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLAdyniqkestlhlvlrlrggf
Low Complexity Region (SEG)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Disordered region (IsUnstruct)
***FVKTLTGKTITLEV************************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES**TI******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES**TI******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES**TI******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES**TI******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES***I*******************LIFAGKQLEDGRTLADYNIQKESTLHLVLR*****
Disordered Region (DISOPRED)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Disordered Region (DISEMBL)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Disordered Region (DISPRO)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	457	2.2.26 [Sep-21-2011]
Q8H159	457	Polyubiquitin 10 OS=Arabi	yes	no	1.0	1.0	1.0	0.0
P0CG85	457	Polyubiquitin OS=Nicotian	N/A	no	1.0	1.0	1.0	0.0
P0CH05	458	Polyubiquitin OS=Petrosel	N/A	no	0.997	0.995	1.0	0.0
P0CH04	458	Polyubiquitin OS=Petrosel	N/A	no	0.997	0.995	1.0	0.0
P59669	457	Polyubiquitin OS=Geodia c	N/A	no	1.0	1.0	0.958	0.0
P0CG71	838	Polyubiquitin-A OS=Caenor	yes	no	1.0	0.545	0.956	0.0
Q63429	810	Polyubiquitin-C OS=Rattus	yes	no	1.0	0.564	0.958	0.0
P62976	658	Polyubiquitin OS=Cricetul	yes	no	1.0	0.694	0.958	0.0
P0CG68	533	Polyubiquitin-C OS=Sus sc	yes	no	1.0	0.857	0.960	0.0
P0CG50	734	Polyubiquitin-C OS=Mus mu	yes	no	1.0	0.622	0.958	0.0

>sp|Q8H159|UBQ10_ARATH Polyubiquitin 10 OS=Arabidopsis thaliana GN=UBQ10 PE=1 SV=2

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/457 (100%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.
Arabidopsis thaliana (taxid: 3702)

>sp|P0CG85|UBI1P_NICSY Polyubiquitin OS=Nicotiana sylvestris GN=UBI11 PE=2 SV=1

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/457 (100%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Nicotiana sylvestris (taxid: 4096)

>sp|P0CH05|UBI2P_PETCR Polyubiquitin OS=Petroselinum crispum GN=PCUBI4-2 PE=3 SV=1

 Score =  899 bits (2324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/456 (100%), Positives = 456/456 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Petroselinum crispum (taxid: 4043)

>sp|P0CH04|UBI1P_PETCR Polyubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=2 SV=1

 Score =  899 bits (2324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/456 (100%), Positives = 456/456 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Petroselinum crispum (taxid: 4043)

>sp|P59669|UBIQP_GEOCY Polyubiquitin OS=Geodia cydonium PE=2 SV=2

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/457 (95%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV+R
Sbjct: 241 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVVR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGF
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGF 457

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Geodia cydonium (taxid: 6047)

>sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A OS=Caenorhabditis elegans GN=ubq-1 PE=2 SV=1

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/457 (95%), Positives = 455/457 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct: 241 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTL GKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 361 SDYNIQKESTLHLVLRLRGGMQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG 
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 457

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Caenorhabditis elegans (taxid: 6239)

>sp|Q63429|UBC_RAT Polyubiquitin-C OS=Rattus norvegicus GN=Ubc PE=1 SV=1

 Score =  873 bits (2256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/457 (95%), Positives = 450/457 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG 
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 457

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Rattus norvegicus (taxid: 10116)

>sp|P62976|UBIQP_CRIGR Polyubiquitin OS=Cricetulus griseus PE=2 SV=2

 Score =  873 bits (2256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/457 (95%), Positives = 450/457 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG 
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 457

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Cricetulus griseus (taxid: 10029)

>sp|P0CG68|UBC_PIG Polyubiquitin-C OS=Sus scrofa GN=UBC PE=2 SV=1

 Score =  873 bits (2256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/457 (96%), Positives = 451/457 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct: 317 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 377 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 437 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 496

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGF
Sbjct: 497 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGF 533

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Sus scrofa (taxid: 9823)

>sp|P0CG50|UBC_MOUSE Polyubiquitin-C OS=Mus musculus GN=Ubc PE=1 SV=2

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/457 (95%), Positives = 450/457 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct: 361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG 
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 457

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
356548680	533	PREDICTED: polyubiquitin-C-like isoform	1.0	0.857	1.0	0.0
357513725	533	Ubiquitin [Medicago truncatula] gi|32749	1.0	0.857	1.0	0.0
240255754	457	polyubiquitin 10 [Arabidopsis thaliana]	1.0	1.0	1.0	0.0
225461088	761	PREDICTED: polyubiquitin-A-like [Vitis v	1.0	0.600	1.0	0.0
357474763	752	Multidrug resistance protein ABC transpo	1.0	0.607	0.997	0.0
357474769	533	Ubiquitin [Medicago truncatula] gi|35550	1.0	0.857	0.997	0.0
297841025	483	hexaubiquitin protein [Arabidopsis lyrat	0.997	0.944	1.0	0.0
356548684	457	PREDICTED: polyubiquitin 10-like [Glycin	1.0	1.0	0.997	0.0
413926513	535	ubiquitin2 [Zea mays]	1.0	0.854	0.997	0.0
356519611	776	PREDICTED: LOW QUALITY PROTEIN: polyubiq	0.991	0.583	0.997	0.0

>gi|356548680|ref|XP_003542728.1| PREDICTED: polyubiquitin-C-like isoform 1 [Glycine max] gi|356548682|ref|XP_003542729.1| PREDICTED: polyubiquitin-C-like isoform 2 [Glycine max]

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/457 (100%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 437 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 496

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 497 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513725|ref|XP_003627151.1| Ubiquitin [Medicago truncatula] gi|327492449|dbj|BAK18565.1| polyubiquitin [Mesembryanthemum crystallinum] gi|355521173|gb|AET01627.1| Ubiquitin [Medicago truncatula]

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/457 (100%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 437 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 496

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 497 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255754|ref|NP_849299.4| polyubiquitin 10 [Arabidopsis thaliana] gi|240255758|ref|NP_849301.4| polyubiquitin 10 [Arabidopsis thaliana] gi|297809731|ref|XP_002872749.1| hexameric polyubiquitin [Arabidopsis lyrata subsp. lyrata] gi|449454712|ref|XP_004145098.1| PREDICTED: polyubiquitin 10-like [Cucumis sativus] gi|449471945|ref|XP_004153450.1| PREDICTED: polyubiquitin 10-like [Cucumis sativus] gi|302595948|sp|P0CG85.1|UBI1P_NICSY RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Flags: Precursor gi|302596003|sp|Q8H159.2|UBQ10_ARATH RecName: Full=Polyubiquitin 10; Contains: RecName: Full=Ubiquitin; Flags: Precursor gi|170352|gb|AAA34123.1| hexameric polyubiquitin [Nicotiana sylvestris] gi|870792|gb|AAA68878.1| polyubiquitin [Arabidopsis thaliana] gi|4115333|gb|AAD03341.1| ubiquitin [Pisum sativum] gi|4115335|gb|AAD03342.1| ubiquitin [Pisum sativum] gi|22655101|gb|AAM98141.1| polyubiquitin UBQ10 [Arabidopsis thaliana] gi|118481031|gb|ABK92469.1| unknown [Populus trichocarpa] gi|147805226|emb|CAN64480.1| hypothetical protein VITISV_002813 [Vitis vinifera] gi|241740189|gb|ACS68204.1| ubiquitin 10.1 [Brassica napus] gi|297318586|gb|EFH49008.1| hexameric polyubiquitin [Arabidopsis lyrata subsp. lyrata] gi|312282619|dbj|BAJ34175.1| unnamed protein product [Thellungiella halophila] gi|332657100|gb|AEE82500.1| polyubiquitin 10 [Arabidopsis thaliana] gi|332657102|gb|AEE82502.1| polyubiquitin 10 [Arabidopsis thaliana]

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/457 (100%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461088|ref|XP_002282119.1| PREDICTED: polyubiquitin-A-like [Vitis vinifera]

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/457 (100%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 484

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 485 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 544

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 545 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 604

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 605 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 664

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 665 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 724

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 725 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 761

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474763|ref|XP_003607667.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] gi|355508722|gb|AES89864.1| Multidrug resistance protein ABC transporter family [Medicago truncatula]

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/457 (99%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 296 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 355

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 356 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 415

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 416 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 475

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 476 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 535

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 536 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 595

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 596 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 655

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 656 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 715

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 716 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY 752

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474769|ref|XP_003607670.1| Ubiquitin [Medicago truncatula] gi|355508725|gb|AES89867.1| Ubiquitin [Medicago truncatula]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/457 (99%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 437 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 496

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 497 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY 533

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841025|ref|XP_002888394.1| hexaubiquitin protein [Arabidopsis lyrata subsp. lyrata] gi|297334235|gb|EFH64653.1| hexaubiquitin protein [Arabidopsis lyrata subsp. lyrata]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/456 (100%), Positives = 456/456 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548684|ref|XP_003542730.1| PREDICTED: polyubiquitin 10-like [Glycine max]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/457 (99%), Positives = 457/457 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413926513|gb|AFW66445.1| ubiquitin2 [Zea mays]

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/457 (99%), Positives = 456/457 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 3   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 62

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 63  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 122

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 123 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 182

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 183 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 242

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 243 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 302

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 303 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 362

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 363 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 422

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 
Sbjct: 423 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 459

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519611|ref|XP_003528465.1| PREDICTED: LOW QUALITY PROTEIN: polyubiquitin-like [Glycine max]

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/457 (99%), Positives = 456/457 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct: 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
           ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 
Sbjct: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
TAIR|locus:2115663	457	UBQ10 "AT4G05320" [Arabidopsis	1.0	1.0	1.0	1.8e-236
WB|WBGene00006727	838	ubq-1 [Caenorhabditis elegans	0.997	0.544	0.958	7.8e-229
UNIPROTKB|P0CG68	533	UBC "Polyubiquitin-C" [Sus scr	1.0	0.857	0.960	7.8e-229
RGD|621244	810	Ubc "ubiquitin C" [Rattus norv	0.997	0.562	0.960	3.4e-228
FB|FBgn0003943	763	Ubi-p63E "Ubiquitin-63E" [Dros	0.997	0.597	0.960	3.4e-228
MGI|MGI:98889	734	Ubc "ubiquitin C" [Mus musculu	0.997	0.621	0.960	3.4e-228
RGD|620240	734	Rps27a "ribosomal protein S27a	0.997	0.621	0.960	3.4e-228
RGD|621562	734	Ubb "ubiquitin B" [Rattus norv	0.997	0.621	0.960	3.4e-228
RGD|68344	734	Uba52 "ubiquitin A-52 residue	0.997	0.621	0.960	3.4e-228
UNIPROTKB|P0CG48	685	UBC "Polyubiquitin-C" [Homo sa	0.997	0.665	0.960	3.4e-228

TAIR|locus:2115663 UBQ10 "AT4G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 2280 (807.7 bits), Expect = 1.8e-236, P = 1.8e-236
 Identities = 457/457 (100%), Positives = 457/457 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
Sbjct:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
             QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Sbjct:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457

GO:0006464 "cellular protein modification process" evidence=ISS;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0007568 "aging" evidence=IEP

WB|WBGene00006727 ubq-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 2208 (782.3 bits), Expect = 7.8e-229, P = 7.8e-229
 Identities = 437/456 (95%), Positives = 455/456 (99%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTL GKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   441 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 500

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKA
Sbjct:   501 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKA 560

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   561 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 620

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   621 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   681 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 740

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   741 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ 800

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   801 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 836

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

UNIPROTKB|P0CG68 UBC "Polyubiquitin-C" [Sus scrofa (taxid:9823)]

 Score = 2208 (782.3 bits), Expect = 7.8e-229, P = 7.8e-229
 Identities = 439/457 (96%), Positives = 451/457 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   317 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   377 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   437 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 496

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGF
Sbjct:   497 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGF 533

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

RGD|621244 Ubc "ubiquitin C" [Rattus norvegicus (taxid:10116)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 424

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   425 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 484

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   485 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 544

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   545 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 604

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   605 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 664

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   665 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 724

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   725 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760

GO:0002020 "protease binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0010992 "ubiquitin homeostasis" evidence=ISO

FB|FBgn0003943 Ubi-p63E "Ubiquitin-63E" [Drosophila melanogaster (taxid:7227)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 424

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   425 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 484

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   485 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 544

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   545 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 604

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   605 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 664

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   665 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 724

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   725 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760

GO:0009987 "cellular process" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

MGI|MGI:98889 Ubc "ubiquitin C" [Mus musculus (taxid:10090)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   529 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 588

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   589 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684

GO:0002020 "protease binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IGI

RGD|620240 Rps27a "ribosomal protein S27a" [Rattus norvegicus (taxid:10116)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   529 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 588

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   589 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0015935 "small ribosomal subunit" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

RGD|621562 Ubb "ubiquitin B" [Rattus norvegicus (taxid:10116)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   529 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 588

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   589 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684

GO:0007141 "male meiosis I" evidence=ISO

GO:0007144 "female meiosis I" evidence=ISO

GO:0008584 "male gonad development" evidence=ISO

GO:0008585 "female gonad development" evidence=ISO

GO:0010992 "ubiquitin homeostasis" evidence=ISO

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=ISO

GO:0060612 "adipose tissue development" evidence=ISO

GO:0060613 "fat pad development" evidence=ISO

GO:0072520 "seminiferous tubule development" evidence=ISO

GO:0097009 "energy homeostasis" evidence=ISO

RGD|68344 Uba52 "ubiquitin A-52 residue ribosomal protein fusion product 1" [Rattus norvegicus (taxid:10116)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   529 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 588

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   589 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684

GO:0005622 "intracellular" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

UNIPROTKB|P0CG48 UBC "Polyubiquitin-C" [Homo sapiens (taxid:9606)]

 Score = 2202 (780.2 bits), Expect = 3.4e-228, P = 3.4e-228
 Identities = 438/456 (96%), Positives = 450/456 (98%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKA
Sbjct:   349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query:   241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR
Sbjct:   469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query:   301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
             LRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct:   529 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 588

Query:   361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
             +DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:   589 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648

Query:   421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0002020 "protease binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0007220 "Notch receptor processing" evidence=TAS

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=TAS

GO:0007254 "JNK cascade" evidence=TAS

GO:0008063 "Toll signaling pathway" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010008 "endosome membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030666 "endocytic vesicle membrane" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0033554 "cellular response to stress" evidence=TAS

GO:0034130 "toll-like receptor 1 signaling pathway" evidence=TAS

GO:0034134 "toll-like receptor 2 signaling pathway" evidence=TAS

GO:0034138 "toll-like receptor 3 signaling pathway" evidence=TAS

GO:0034142 "toll-like receptor 4 signaling pathway" evidence=TAS

GO:0035666 "TRIF-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0046788 "egress of virus within host cell" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050852 "T cell receptor signaling pathway" evidence=TAS

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=TAS

GO:0051403 "stress-activated MAPK cascade" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0061418 "regulation of transcription from RNA polymerase II promoter in response to hypoxia" evidence=TAS

GO:0070423 "nucleotide-binding oligomerization domain containing signaling pathway" evidence=TAS

GO:0071456 "cellular response to hypoxia" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000080 "G1 phase of mitotic cell cycle" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0000187 "activation of MAPK activity" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002224 "toll-like receptor signaling pathway" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0002756 "MyD88-independent toll-like receptor signaling pathway" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CG80	UBIQI_DICDI	No assigned EC number	0.9473	0.6652	0.9967	no	no
P0CG81	UBIQH_DICDI	No assigned EC number	0.9473	0.8315	0.9973	no	no
P0CG82	UBIQP_TETPY	No assigned EC number	0.9473	0.8315	0.9973	N/A	no
P0CH04	UBI1P_PETCR	No assigned EC number	1.0	0.9978	0.9956	N/A	no
P62976	UBIQP_CRIGR	No assigned EC number	0.9584	1.0	0.6945	yes	no
P0CG85	UBI1P_NICSY	No assigned EC number	1.0	1.0	1.0	N/A	no
P69315	UBIQP_LINUS	No assigned EC number	0.9967	0.6673	1.0	N/A	no
Q58G87	UBQ3_ORYSJ	No assigned EC number	0.9947	0.8336	1.0	no	no
P0CG88	UBIQJ_DICDI	No assigned EC number	0.9473	0.6652	0.9967	no	no
P42739	UBIQP_ACECL	No assigned EC number	0.9572	0.9212	0.9952	N/A	no
P0CG84	UBI4P_NICSY	No assigned EC number	1.0	0.8249	1.0	N/A	no
P0CG71	UBIQ1_CAEEL	No assigned EC number	0.9562	1.0	0.5453	yes	no
P59669	UBIQP_GEOCY	No assigned EC number	0.9584	1.0	1.0	N/A	no
P0CH27	RL402_TRYCR	No assigned EC number	0.9704	0.6673	0.8567	N/A	no
P0CG72	UBI4P_SCHPO	No assigned EC number	0.9711	0.8336	0.9973	yes	no
P0CG75	UBI4P_KLULA	No assigned EC number	0.9711	0.8336	1.0	yes	no
P0CG74	UBI4P_CANAX	No assigned EC number	0.9737	0.6673	1.0	N/A	no
P0CG76	UBIQA_DICDI	No assigned EC number	0.9394	0.8315	0.9973	no	no
P0CG79	UBIQG_DICDI	No assigned EC number	0.9448	0.8336	1.0	no	no
P0CG78	UBIQF_DICDI	No assigned EC number	0.9452	1.0	0.8574	yes	no
P0CH05	UBI2P_PETCR	No assigned EC number	1.0	0.9978	0.9956	N/A	no
P0CG50	UBC_MOUSE	No assigned EC number	0.9584	1.0	0.6226	yes	no
P0CH28	UBC_BOVIN	No assigned EC number	0.9584	1.0	0.6623	yes	no
P0CG55	UBB_SHEEP	No assigned EC number	0.9540	0.6673	1.0	N/A	no
P0CG54	UBB_CAVPO	No assigned EC number	0.9573	0.6673	0.9807	yes	no
Q1EC66	UBQ3_ARATH	No assigned EC number	1.0	0.6652	0.9934	no	no
P0CG48	UBC_HUMAN	No assigned EC number	0.9584	1.0	0.6671	yes	no
Q3E7T8	UBQ14_ARATH	No assigned EC number	1.0	0.6673	1.0	no	no
Q9FHQ6	UBQ9_ARATH	No assigned EC number	0.9019	0.6673	0.9472	no	no
P0CG70	UBI4P_NEUCR	No assigned EC number	0.9736	0.6652	0.9967	N/A	no
Q8MKD1	UBB_HORSE	No assigned EC number	0.9540	0.6673	1.0	no	no
P69309	UBIQP_AVEFA	No assigned EC number	1.0	0.6652	0.9967	N/A	no
P42740	UBIQP_AGLNE	No assigned EC number	0.9518	1.0	1.0	N/A	no
P69322	UBIQP_PEA	No assigned EC number	1.0	0.8336	1.0	N/A	no
P0CG66	UBC_GORGO	No assigned EC number	0.9584	1.0	0.7504	N/A	no
P0CH33	UBQ11_ARATH	No assigned EC number	1.0	0.5010	1.0	no	no
P69325	UBIQP_SOYBN	No assigned EC number	1.0	0.6673	1.0	no	no
P0CG62	UBB_CHICK	No assigned EC number	0.9573	0.6673	1.0	yes	no
P0CG63	UBI4P_YEAST	No assigned EC number	0.9736	0.8315	0.9973	yes	no
P0CG61	UBC_PONPY	No assigned EC number	0.9584	1.0	0.6005	N/A	no
P0CH32	UBQ4_ARATH	No assigned EC number	1.0	0.8315	0.9947	no	no
P0CG49	UBB_MOUSE	No assigned EC number	0.9573	0.6673	1.0	no	no
P0CG64	UBC_PANTR	No assigned EC number	0.9584	1.0	0.6005	yes	no
Q63429	UBC_RAT	No assigned EC number	0.9584	1.0	0.5641	yes	no
P0CG68	UBC_PIG	No assigned EC number	0.9606	1.0	0.8574	yes	no
P0CG69	UBIQP_DROME	No assigned EC number	0.9584	1.0	0.5989	yes	no
P0CG53	UBB_BOVIN	No assigned EC number	0.9573	0.6673	1.0	no	no
P0CG51	UBB_RAT	No assigned EC number	0.9573	0.6673	1.0	no	no
Q8H159	UBQ10_ARATH	No assigned EC number	1.0	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	457
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-43
smart00213	72	smart00213, UBQ, Ubiquitin homologues	1e-27
smart00213	72	smart00213, UBQ, Ubiquitin homologues	1e-27
smart00213	72	smart00213, UBQ, Ubiquitin homologues	1e-27
smart00213	72	smart00213, UBQ, Ubiquitin homologues	1e-27
smart00213	72	smart00213, UBQ, Ubiquitin homologues	1e-27
smart00213	72	smart00213, UBQ, Ubiquitin homologues	1e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-27
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	3e-25
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-24
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	8e-21
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	5e-18
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-16
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-14
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	1e-13
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	2e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-12
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	2e-11
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	2e-10
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	2e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	3e-09
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	1e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-08
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	3e-06
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	2e-05
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	1e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	3e-04
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	0.001
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.002

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 1e-43
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 1e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1  IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 61 IQKESTLHLVLR 72
          IQ  ST+HLVLR
Sbjct: 61 IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 1e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 137 IQKESTLHLVLR 148
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 1e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 213 IQKESTLHLVLR 224
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 1e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 289 IQKESTLHLVLR 300
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 1e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 365 IQKESTLHLVLR 376
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 1e-27
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 441 IQKESTLHLVLR 452
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65
          KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1  KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 66 TLHLVLRLR 74
          TLHLVLRLR
Sbjct: 61 TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 141
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 142 TLHLVLRLR 150
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 217
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 218 TLHLVLRLR 226
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 234 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 293
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 294 TLHLVLRLR 302
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 369
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 370 TLHLVLRLR 378
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 3e-27
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 445
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 446 TLHLVLRLR 454
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          ++  S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 289 IQKESTLHLVLRLRGG 304
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 365 IQKESTLHLVLRLRGG 380
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 3e-25
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 441 IQKESTLHLVLRLRGG 456
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 4  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
           VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1  TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 64 ESTLHLVLR 72
           STLHLVLR
Sbjct: 61 GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 80  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 140 ESTLHLVLR 148
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 216 ESTLHLVLR 224
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 291
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 292 ESTLHLVLR 300
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 367
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 368 ESTLHLVLR 376
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 5e-24
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 443
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 444 ESTLHLVLR 452
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1  MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          +   ST+H+VL+LRGG
Sbjct: 61 VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 289 IQKESTLHLVLRLRGG 304
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 365 IQKESTLHLVLRLRGG 380
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 85.6 bits (212), Expect = 8e-21
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 441 IQKESTLHLVLRLRGG 456
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 61  IQKESTLHLVLRLRGG 76
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 137 IQKESTLHLVLRLRGG 152
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 213 IQKESTLHLVLRLRGG 228
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 289 IQKESTLHLVLRLRGG 304
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 365 IQKESTLHLVLRLRGG 380
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 5e-18
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 441 IQKESTLHLVLRLRGG 456
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 59
          ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1  IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 60 NIQKESTLHLVL 71
          +I+   T+ +V+
Sbjct: 61 DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 135
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 136 NIQKESTLHLVL 147
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 211
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 212 NIQKESTLHLVL 223
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 287
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 288 NIQKESTLHLVL 299
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 363
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 364 NIQKESTLHLVL 375
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 439
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 440 NIQKESTLHLVL 451
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
          M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1  MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 59 YNI 61
          Y I
Sbjct: 61 YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 135 YNI 137
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 211 YNI 213
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 286
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 287 YNI 289
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 362
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 363 YNI 365
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 438
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 439 YNI 441
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1  IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 61 IQKESTLHLVLR 72
          ++   T+HLV R
Sbjct: 61 VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 137 IQKESTLHLVLR 148
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 213 IQKESTLHLVLR 224
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 289 IQKESTLHLVLR 300
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 365 IQKESTLHLVLR 376
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 441 IQKESTLHLVLR 452
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 4  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
           VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1  KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 64 ESTLHLVLR 72
             L LV R
Sbjct: 61 GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 80  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 140 ESTLHLVLR 148
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 216 ESTLHLVLR 224
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 291
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 292 ESTLHLVLR 300
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 367
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 368 ESTLHLVLR 376
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 443
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 444 ESTLHLVLR 452
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 3  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
          ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1  VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 63 KESTLHLVLR 72
          ++S LH V R
Sbjct: 61 QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 79  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 139 KESTLHLVLR 148
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 215 KESTLHLVLR 224
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 291 KESTLHLVLR 300
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 366
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 367 KESTLHLVLR 376
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 442
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 443 KESTLHLVLR 452
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1  MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 61 IQKESTLHLVLRLRGG 76
          +++  TL +  RL GG
Sbjct: 59 VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 137 IQKESTLHLVLRLRGG 152
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 213 IQKESTLHLVLRLRGG 228
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 289 IQKESTLHLVLRLRGG 304
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 365 IQKESTLHLVLRLRGG 380
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 441 IQKESTLHLVLRLRGG 456
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1  MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 61 IQKESTLHLVLR 72
          I   + L+LV+R
Sbjct: 61 IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 137 IQKESTLHLVLR 148
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 213 IQKESTLHLVLR 224
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 289 IQKESTLHLVLR 300
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 365 IQKESTLHLVLR 376
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 441 IQKESTLHLVLR 452
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5  LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 68 HLVLRLRGG 76
          HL L+ RGG
Sbjct: 65 HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 144 HLVLRLRGG 152
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 220 HLVLRLRGG 228
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 296 HLVLRLRGG 304
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 371
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 372 HLVLRLRGG 380
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 447
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 448 HLVLRLRGG 456
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 1  MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1  MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 59 YNIQKESTLHLVLR 72
          YN+     + L++R
Sbjct: 61 YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 77  MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 135 YNIQKESTLHLVLR 148
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 153 MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 211 YNIQKESTLHLVLR 224
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 229 MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 287 YNIQKESTLHLVLR 300
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 305 MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 363 YNIQKESTLHLVLR 376
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 381 MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 439 YNIQKESTLHLVLR 452
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 3  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
          I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1  ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 63 KESTLHLVLRLRGG 76
             T+ + LRLRGG
Sbjct: 61 PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 79  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 139 KESTLHLVLRLRGG 152
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 215 KESTLHLVLRLRGG 228
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 290
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 291 KESTLHLVLRLRGG 304
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 366
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 367 KESTLHLVLRLRGG 380
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 442
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 443 KESTLHLVLRLRGG 456
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
              +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1  DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1  MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 58 DYNI 61
          +Y I
Sbjct: 61 EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 134 DYNI 137
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 210 DYNI 213
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 285
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 286 DYNI 289
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 361
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 362 DYNI 365
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 437
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 438 DYNI 441
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 5  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
          V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3  VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 65 STLHLVL 71
            + +++
Sbjct: 63 YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 81  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 140
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 141 STLHLVL 147
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 216
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 217 STLHLVL 223
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 292
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 293 STLHLVL 299
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 368
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 369 STLHLVL 375
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 444
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 445 STLHLVL 451
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1  IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 61 IQKESTLHLVLR 72
          I+   T+HLV++
Sbjct: 60 IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 137 IQKESTLHLVLR 148
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 213 IQKESTLHLVLR 224
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 289 IQKESTLHLVLR 300
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 365 IQKESTLHLVLR 376
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 441 IQKESTLHLVLR 452
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69
          G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9  GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 70 V 70
          +
Sbjct: 69 L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 146 V 146
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 222 V 222
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 298 V 298
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 373
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 374 V 374
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 450 V 450
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 62
            T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9  ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 138
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 214
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 290
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 366
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 442
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 133
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 134 DYNIQKESTLHLVLR 148
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 209
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 210 DYNIQKESTLHLVLR 224
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 285
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 286 DYNIQKESTLHLVLR 300
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 361
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 362 DYNIQKESTLHLVLR 376
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 437
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 438 DYNIQKESTLHLVLR 452
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 5  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLADYNIQ 62
          VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L    + 
Sbjct: 7  VKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLG 66

Query: 63 KESTLHLVLR 72
            ST+ LV++
Sbjct: 67 PGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 18 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 64
            + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21 SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 65 STLHLVLR 72
            +H+V+R
Sbjct: 81 IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 94  ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 140
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 141 STLHLVLR 148
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 170 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 216
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 217 STLHLVLR 224
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 246 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 292
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 293 STLHLVLR 300
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 322 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 368
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 369 STLHLVLR 376
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 398 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 444
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 445 STLHLVLR 452
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2  MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 61 IQKESTLHLVLRLRGGM 77
          +   S L LV  +  G+
Sbjct: 61 LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 137 IQKESTLHLVLRLRGGM 153
           +   S L LV  +  G+
Sbjct: 61  LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 213 IQKESTLHLVLRLRGGM 229
           +   S L LV  +  G+
Sbjct: 61  LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 289 IQKESTLHLVLRLRGGM 305
           +   S L LV  +  G+
Sbjct: 61  LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 365 IQKESTLHLVLRLRGGM 381
           +   S L LV  +  G+
Sbjct: 61  LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 441 IQKESTLHLV 450
           +   S L LV
Sbjct: 61  LGDGSKLTLV 70

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	457
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.84
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.82
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.81
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.8
PTZ00044	76	ubiquitin; Provisional	99.77
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.77
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.77
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.76
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.76
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.74
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.74
PTZ00044	76	ubiquitin; Provisional	99.74
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.73
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.73
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.72
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.71
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.7
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.68
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.68
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.67
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.67
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.67
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.65
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.65
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.65
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.65
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.64
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.64
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.64
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.64
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.63
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.63
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.62
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.62
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.62
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.61
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.61
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.6
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.6
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.58
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.58
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.57
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.53
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.52
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.51
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.51
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.5
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.5
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.5
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.45
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.41
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.4
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.39
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.38
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.38
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.33
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.31
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.3
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.28
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.28
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.27
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.27
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.17
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.16
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.15
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.14
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.1
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.03
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.03
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.03
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.02
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	99.01
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	98.95
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.93
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.9
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.88
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.78
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.68
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.63
PLN02560	308	enoyl-CoA reductase	98.63
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.61
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.54
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	98.53
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.52
PLN02560	308	enoyl-CoA reductase	98.51
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.5
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.46
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.44
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.44
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.38
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.31
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	98.25
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.18
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	98.14
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.13
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.08
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.92
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	97.88
KOG4495	110	consensus RNA polymerase II transcription elongati	97.86
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	97.85
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.81
PF13019	162	Telomere_Sde2: Telomere stability and silencing	97.7
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.57
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.57
KOG4495	110	consensus RNA polymerase II transcription elongati	97.36
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	97.24
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.2
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.18
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	97.07
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	96.73
PF13019	162	Telomere_Sde2: Telomere stability and silencing	96.68
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	96.6
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.33
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	96.32
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	96.15
KOG0013	231	consensus Uncharacterized conserved protein [Funct	96.13
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.06
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	96.04
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	95.92
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	95.9
COG5417	81	Uncharacterized small protein [Function unknown]	95.72
KOG1639	297	consensus Steroid reductase required for elongatio	95.65
KOG0013	231	consensus Uncharacterized conserved protein [Funct	95.36
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	95.29
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	95.28
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	95.15
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	94.99
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	94.95
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	94.93
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	94.64
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	94.55
PRK06437	67	hypothetical protein; Provisional	94.55
COG5417	81	Uncharacterized small protein [Function unknown]	94.5
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	94.43
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	94.18
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	94.16
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	94.15
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	93.85
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	93.57
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	93.48
PRK08364	70	sulfur carrier protein ThiS; Provisional	92.6
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	92.41
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	92.21
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	92.12
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	92.0
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	91.58
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	91.51
PRK06488	65	sulfur carrier protein ThiS; Validated	91.47
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	90.76
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	90.26
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	90.24
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	90.14
KOG1639	297	consensus Steroid reductase required for elongatio	89.61
PF12754	309	Blt1: Cell-cycle control medial ring component; In	89.16
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	88.91
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	88.61
PRK05659	66	sulfur carrier protein ThiS; Validated	88.22
PRK06944	65	sulfur carrier protein ThiS; Provisional	88.02
PF14453	57	ThiS-like: ThiS-like ubiquitin	87.89
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	87.59
KOG4583	391	consensus Membrane-associated ER protein involved	87.23
smart00455	70	RBD Raf-like Ras-binding domain.	86.94
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	86.91
PRK05863	65	sulfur carrier protein ThiS; Provisional	86.9
PRK08053	66	sulfur carrier protein ThiS; Provisional	86.41
smart00455	70	RBD Raf-like Ras-binding domain.	86.33
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	86.18
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	85.78
PRK07440	70	hypothetical protein; Provisional	85.5
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	85.46
PRK06083	84	sulfur carrier protein ThiS; Provisional	85.13
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	84.65
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	84.58
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	84.34
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	84.03
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	83.54
cd01818	77	TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleo	83.21
KOG4583	391	consensus Membrane-associated ER protein involved	82.69
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	82.48
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	82.43
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	82.32
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	82.3
KOG4598	1203	consensus Putative ubiquitin-specific protease [Po	80.84

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.84  E-value=1.2e-20  Score=151.56  Aligned_cols=96  Identities=44%  Similarity=0.642  Sum_probs=92.0

Q ss_pred             cccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccC
Q 012736          361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN  440 (457)
Q Consensus       361 ~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~  440 (457)
                      ..+++.+-+++++..+.++.|+|+|++..|+++.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~   87 (103)
T cd01802           8 PFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN   87 (103)
T ss_pred             CccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcC
Confidence            34667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEecCCC
Q 012736          441 IQKESTLHLVLRLRGG  456 (457)
Q Consensus       441 i~~~~~i~l~~r~~GG  456 (457)
                      |+++++|++++|++||
T Consensus        88 I~~~stL~l~~~l~GG  103 (103)
T cd01802          88 ISEGCTLKLVLAMRGG  103 (103)
T ss_pred             CCCCCEEEEEEecCCC
Confidence            9999999999999998

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=1.2e-21  Score=149.77  Aligned_cols=76  Identities=99%  Similarity=1.337  Sum_probs=74.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      ||+|++++.|+|++++|+|||||+++|++|++++|+|+++|+|+|+|++|+|++||++|+|+.+||+|++++++++
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG   76 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999998877

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.81  E-value=8.2e-20  Score=146.69  Aligned_cols=99  Identities=42%  Similarity=0.623  Sum_probs=93.7

Q ss_pred             CcccccccccccceeEEEEecCcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCccc
Q 012736           54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA  133 (457)
Q Consensus        54 ~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~  133 (457)
                      +....+++.+-+++|+++++++.|+|+|++.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~   84 (103)
T cd01802           5 KEPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLN   84 (103)
T ss_pred             cCCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHH
Confidence            34557889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCcceeEEEeecc
Q 012736          134 DYNIQKESTLHLVLRLRGG  152 (457)
Q Consensus       134 ~y~i~~~s~i~l~~~~~~~  152 (457)
                      +|+|.++++||+.++++||
T Consensus        85 dy~I~~~stL~l~~~l~GG  103 (103)
T cd01802          85 DYNISEGCTLKLVLAMRGG  103 (103)
T ss_pred             HcCCCCCCEEEEEEecCCC
Confidence            9999999999999987664

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.80  E-value=1.4e-19  Score=137.46  Aligned_cols=74  Identities=41%  Similarity=0.618  Sum_probs=71.7

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|+|++.  ++++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.||++|||++++||++++|++||
T Consensus         1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            78999984  689999999999999999999999999999999999999999999999999999999999999998

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>PTZ00044 ubiquitin; Provisional

Probab=99.77  E-value=1.2e-18  Score=133.38  Aligned_cols=76  Identities=50%  Similarity=0.822  Sum_probs=74.9

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|+|++.+|+++++++++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+++++++|++.++++||
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg   76 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999998

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.77  E-value=1.6e-18  Score=131.66  Aligned_cols=74  Identities=32%  Similarity=0.618  Sum_probs=72.8

Q ss_pred             eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |||+++.|++++++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||+++++|+++.|++||
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg   74 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG   74 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999998

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=2.4e-19  Score=148.59  Aligned_cols=76  Identities=96%  Similarity=1.328  Sum_probs=74.6

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|||+++.|++++++|.++|||+++|+|||+++|||+++|+|+|.|++|+|+++|+||+|+.+||+|++++++++
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg   76 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999998875

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.76  E-value=1.3e-18  Score=132.25  Aligned_cols=73  Identities=36%  Similarity=0.653  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|++|+|+++|++|+|.+++++|+++++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999875

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.76  E-value=1.6e-18  Score=131.67  Aligned_cols=74  Identities=41%  Similarity=0.618  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |||||++.  ++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+++|++|+|.+++|+|++++++++
T Consensus         1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            89999984  799999999999999999999999999999999999999999999999999999999999998763

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01803 Ubiquitin Ubiquitin

Probab=99.74  E-value=6.8e-18  Score=129.29  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=74.8

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|+|++.+|+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++.+|++||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999998

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.74  E-value=6.5e-18  Score=128.34  Aligned_cols=73  Identities=36%  Similarity=0.653  Sum_probs=71.3

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      |+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|||+++++|++++|.
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999885

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>PTZ00044 ubiquitin; Provisional

Probab=99.74  E-value=5.7e-18  Score=129.59  Aligned_cols=75  Identities=49%  Similarity=0.803  Sum_probs=73.1

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |||||++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+++++++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g   75 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG   75 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999998765

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.73  E-value=1.4e-17  Score=127.47  Aligned_cols=76  Identities=55%  Similarity=0.965  Sum_probs=74.7

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|+|++.+|+++.++++++.||++||++|++..|+|++.|+|+|+|+.|+|+.+|++||+++|++|++..+++||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg   76 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999998

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.73  E-value=7.3e-18  Score=128.66  Aligned_cols=74  Identities=36%  Similarity=0.634  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCcE-EEEE-ecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736            1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~~-~~~~-v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      |||||++++|++ ++++ +.+++||.++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++.
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            999999999997 7895 8999999999999999999999999999999999999999999999999999998864

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.72  E-value=2.9e-17  Score=125.75  Aligned_cols=77  Identities=25%  Similarity=0.480  Sum_probs=74.8

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      +|+|+|+...|+.+.+++++++||++||++|++..|+|+++|+|+|.|+.|+|+ +|++|||++|++|+++..++||+
T Consensus         1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~   77 (78)
T cd01804           1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL   77 (78)
T ss_pred             CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence            589999999999999999999999999999999999999999999999999998 99999999999999999999994

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.71  E-value=2.6e-17  Score=124.98  Aligned_cols=73  Identities=32%  Similarity=0.597  Sum_probs=70.8

Q ss_pred             EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+++++++++++.+
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g   73 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG   73 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999988765

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.70  E-value=5e-17  Score=124.06  Aligned_cols=74  Identities=36%  Similarity=0.634  Sum_probs=70.7

Q ss_pred             eeeEEEcCCCCE-EEEE-ecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736          381 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (457)
Q Consensus       381 ~~i~v~~~~g~~-~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~  454 (457)
                      |+|+|++.+|++ +.++ +.+++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|+-
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            799999999997 6885 8999999999999999999999999999999999999999999999999999999874

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.68  E-value=1.2e-16  Score=120.00  Aligned_cols=70  Identities=39%  Similarity=0.733  Sum_probs=68.1

Q ss_pred             eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      |+|++..|+++.++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|||++||+|+++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999876

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.68  E-value=1.6e-16  Score=119.31  Aligned_cols=72  Identities=24%  Similarity=0.356  Sum_probs=69.3

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      +|.|+|++..|+.+.++|+|++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|+|..
T Consensus         1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence            478999999999999999999999999999999999999999999999999999999999999999999864

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=5.5e-18  Score=129.84  Aligned_cols=76  Identities=99%  Similarity=1.337  Sum_probs=74.6

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |++|+++..|++.+++|.|++||..+|++|....|+||++|+|+|+|+.|+|+.||++|||+..|||+++.|++||
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG   76 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999999

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.67  E-value=2e-16  Score=121.08  Aligned_cols=75  Identities=55%  Similarity=0.948  Sum_probs=73.0

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|+|++++|+++.++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+++|++|++.+++++|++++.++
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g   75 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG   75 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999998765

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.67  E-value=2e-16  Score=121.07  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=73.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++.+|+++.++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++++++++
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987653

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.65  E-value=1.9e-16  Score=118.89  Aligned_cols=70  Identities=39%  Similarity=0.733  Sum_probs=67.9

Q ss_pred             EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      |||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++|++|++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999754

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=7.7e-17  Score=133.72  Aligned_cols=77  Identities=95%  Similarity=1.301  Sum_probs=75.5

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      |+|||+++.|++..++|.+++||..+|++|++.+|||+++|||+|.|++|+|..+|+||+|+..+||++++|++||.
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~   77 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA   77 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999994

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.65  E-value=2.5e-16  Score=118.29  Aligned_cols=70  Identities=24%  Similarity=0.383  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~   70 (457)
                      |.|+|++..|+++.++|++++||.++|++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.+++++||.
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~   71 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY   71 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence            7899999999999999999999999999999999999999999999999999999999999999999985

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.1e-16  Score=109.04  Aligned_cols=70  Identities=54%  Similarity=0.911  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~   70 (457)
                      |-|-|+++.|+-+.++++|.|+|+.||+++++++||||.+|+|+|.|+++.|+.|-++|+...+|.+|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            7789999999999999999999999999999999999999999999999999999999999999999984

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.64  E-value=1.1e-15  Score=119.50  Aligned_cols=79  Identities=18%  Similarity=0.439  Sum_probs=76.8

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...|+|+|++.+|+...++|.+++|++.||.+++++.|+|+++|+|+|+|+.|+++.|+++||+++|++|++.+|++||
T Consensus         9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG   87 (87)
T cd01763           9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence            4568999999999999999999999999999999999999999999999999999999999999999999999999998

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.64  E-value=5.8e-16  Score=115.55  Aligned_cols=68  Identities=37%  Similarity=0.581  Sum_probs=65.7

Q ss_pred             EEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      .|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|+|.+
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            57888999999999999999999999999999999999999999999999999999999999999976

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.64  E-value=1e-15  Score=117.46  Aligned_cols=73  Identities=38%  Similarity=0.705  Sum_probs=70.6

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCC--CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      |+|+|++.+|+++.++|++++||++||++|++.+|+  |+++|+|+|+|+.|+|+.+|++|||++|++|++.++-
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence            789999999999999999999999999999999999  9999999999999999999999999999999998864

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.64  E-value=4.2e-16  Score=116.30  Aligned_cols=67  Identities=37%  Similarity=0.606  Sum_probs=65.2

Q ss_pred             EEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEE
Q 012736            5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (457)
Q Consensus         5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~   71 (457)
                      |+.++|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+.++.+|+|.+++++|+++
T Consensus         3 vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           3 VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             EEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            6889999999999999999999999999999999999999999999999999999999999999975

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.63  E-value=7.6e-16  Score=117.44  Aligned_cols=69  Identities=33%  Similarity=0.677  Sum_probs=67.3

Q ss_pred             CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ++|+++++++++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg   73 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG   73 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999998

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.63  E-value=6.4e-16  Score=118.28  Aligned_cols=75  Identities=25%  Similarity=0.491  Sum_probs=72.1

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++.+|++++++|++++||.++|++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.+++++|++..+.++
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~   76 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG   76 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence            89999999999999999999999999999999999999999999999999999 9999999999999999887654

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=2.6e-16  Score=107.21  Aligned_cols=70  Identities=54%  Similarity=0.911  Sum_probs=67.5

Q ss_pred             EEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeE
Q 012736           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (457)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~  146 (457)
                      |.|.|++++|+.+.+++++.|+|+.+|+++++++||||.+|+|+|+|+++.|+.|-++|++..||++|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            5688999999999999999999999999999999999999999999999999999999999999999974

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.62  E-value=1.7e-15  Score=114.66  Aligned_cols=72  Identities=44%  Similarity=0.704  Sum_probs=69.7

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      |+|+|+..+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++..|
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999875

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.62  E-value=1.5e-15  Score=116.48  Aligned_cols=73  Identities=38%  Similarity=0.705  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCC--CCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i--p~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++.+|++++++|.+++||.++|++|+++.|+  |+++|+|+|+|+.|+|+.+|++|+|.+++++++.++-
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence            899999999999999999999999999999999999  9999999999999999999999999999999987753

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.61  E-value=1.7e-15  Score=114.64  Aligned_cols=72  Identities=44%  Similarity=0.704  Sum_probs=69.9

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      |+|+|++++|+++++++++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++.+
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999753

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.61  E-value=2e-15  Score=113.17  Aligned_cols=69  Identities=57%  Similarity=0.970  Sum_probs=66.1

Q ss_pred             EcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736          386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (457)
Q Consensus       386 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~  454 (457)
                      ++.+|+.+.++|++++||++||.+|++..|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|.|
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~   69 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR   69 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence            467899999999999999999999999999999999999999999999999999999999999999864

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.60  E-value=2.6e-15  Score=113.07  Aligned_cols=71  Identities=34%  Similarity=0.489  Sum_probs=67.5

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      ++|+|++.+|+ .++++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++|||++|++|++++|
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            46899999997 589999999999999999999999999999999999999999999999999999999886

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.60  E-value=2.2e-15  Score=116.15  Aligned_cols=73  Identities=33%  Similarity=0.474  Sum_probs=70.6

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEE--EEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l--~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      +|+|+|+...|+++.+++++++||++||.+|++..|+|+++|+|  .|+|+.|+|+.+|++|||++|++|+++++
T Consensus         2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~   76 (80)
T cd01792           2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ   76 (80)
T ss_pred             ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence            38999999999999999999999999999999999999999999  88999999999999999999999999988

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.58  E-value=2.9e-15  Score=115.46  Aligned_cols=72  Identities=32%  Similarity=0.451  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceE--eeccEEccCCCcccccccccccceeEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l--~~~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      |+|+|++.+|++++++|++++||.++|++|+++.|+|+++|+|  +|+|+.|+|+.+|++|++.+++++|++++
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~   76 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ   76 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence            7899999999999999999999999999999999999999999  89999999999999999999999999886

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.58  E-value=5.6e-15  Score=110.94  Aligned_cols=68  Identities=35%  Similarity=0.543  Sum_probs=64.2

Q ss_pred             eEEEcC-CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEE
Q 012736          383 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV  450 (457)
Q Consensus       383 i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~  450 (457)
                      |+|++. .|+++.++|++++||++||.+|++.+|+|+++|+|+|+|++|+|+ .+|++|||++|++|++.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            578888 899999999999999999999999999999999999999999987 58999999999999874

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.57  E-value=5.1e-15  Score=111.45  Aligned_cols=71  Identities=34%  Similarity=0.489  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      |.|+|++.+|+ .++++++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|++.+++++|++++
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            67999999997 599999999999999999999999999999999999999999999999999999999864

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.53  E-value=1.4e-14  Score=108.86  Aligned_cols=68  Identities=35%  Similarity=0.543  Sum_probs=64.6

Q ss_pred             EEEEcC-CCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCC-CcccccccccccceeEE
Q 012736            3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV   70 (457)
Q Consensus         3 i~~~~~-~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~   70 (457)
                      |+|++. +|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.+++++|+.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            578999 999999999999999999999999999999999999999999887 68999999999999973

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.52  E-value=2.7e-14  Score=107.00  Aligned_cols=69  Identities=57%  Similarity=0.970  Sum_probs=66.1

Q ss_pred             EcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736            6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      ++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|.+|+|.++++++++++++
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~   69 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR   69 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence            578999999999999999999999999999999999999999999999999999999999999988653

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.51  E-value=2.6e-14  Score=108.95  Aligned_cols=69  Identities=33%  Similarity=0.677  Sum_probs=66.0

Q ss_pred             CCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         8 ~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      ++|++++++|++++||.++|++|+...|+|++.|+|+|+|+.|+|+++|++|+|.+++++|++++++++
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg   73 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG   73 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence            689999999999999999999999999999999999999999999999999999999999999987653

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.51  E-value=4e-14  Score=106.72  Aligned_cols=72  Identities=25%  Similarity=0.267  Sum_probs=64.3

Q ss_pred             ceeeEEEcCCCCEE--EEEecCCccHHHHHHHHhhhcC--CCCCCeEEEEcCeecCCCCcccccC--CCCCCEEEEEE
Q 012736          380 GMQIFVKTLTGKTI--TLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL  451 (457)
Q Consensus       380 ~~~i~v~~~~g~~~--~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~l~~~g~~L~d~~tL~~~~--i~~~~~i~l~~  451 (457)
                      ++.++|++++++.+  ++++++++||++||++|++..+  .|+++|+|+|.|+.|+|+.||++|+  +.+|.||||+.
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            46899999999984  4555899999999999999874  4579999999999999999999996  99999999985

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.50  E-value=7.7e-14  Score=109.14  Aligned_cols=76  Identities=18%  Similarity=0.467  Sum_probs=73.3

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++++|+.++++|.+++|+..||++++++.|+|+++|+|+|+|+.|+++.|+++|++.++++|+++++++++
T Consensus        12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG   87 (87)
T cd01763          12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999987654

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.50  E-value=3.9e-14  Score=106.78  Aligned_cols=71  Identities=25%  Similarity=0.282  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCcE--EEEEecccccHHHHHHHHhhhhC--CCCccceEeeccEEccCCCcccccc--cccccceeEEE
Q 012736            1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL   71 (457)
Q Consensus         1 ~~i~~~~~~g~~--~~~~v~~~dtv~~ik~ki~~~~~--ip~~~q~l~~~g~~L~~~~tl~~y~--i~~~sti~l~~   71 (457)
                      |.++|++++|+.  |++++++++||.++|++|.+..+  .|+++|+|+|.|+.|+|+.||++|.  +.++.|+|||.
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            578999999998  55666899999999999998874  5589999999999999999999995  99999999975

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.50  E-value=5.6e-14  Score=105.91  Aligned_cols=70  Identities=29%  Similarity=0.469  Sum_probs=66.2

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      ++|+|++. |+.+.+++++++||++||.+|++.+|+|+++|+|.|+|+.|+|+.+|++|||++|++|++..
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence            46889986 88999999999999999999999999999999999999999999999999999999999864

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.45  E-value=1.7e-13  Score=103.50  Aligned_cols=69  Identities=23%  Similarity=0.440  Sum_probs=64.8

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEEe---cCeeccCCCcccccccccCceEEEE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV  374 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~---~g~~L~d~~~l~~~~i~~~~~l~l~  374 (457)
                      +.|+|+ |+|++|.+++++++||++||++|++++|+|+++|+|++   +|+.++|+.+|++|++.+++.++|+
T Consensus         1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            357776 99999999999999999999999999999999999996   8999999999999999999999986

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.41  E-value=6e-13  Score=100.46  Aligned_cols=70  Identities=23%  Similarity=0.413  Sum_probs=63.8

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE---cCeecCCCCcccccCCCCCCEEEEEE
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~---~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      |.|.|+ ..|+++.++|++++||++||++|++.+|+|+++|+|+|   .|+.+.|+.+|++|+|++|+.|.|..
T Consensus         1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG   73 (74)
T cd01813           1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG   73 (74)
T ss_pred             CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence            356666 46889999999999999999999999999999999996   89999999999999999999998763

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.40  E-value=5.6e-13  Score=100.42  Aligned_cols=69  Identities=29%  Similarity=0.490  Sum_probs=66.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~   70 (457)
                      |+|.|++. |+++++++.+++||.++|++|++..|+|++.|+|+|+|+.|+|+.+|++|++.++++++++
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~   69 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL   69 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence            68999997 9999999999999999999999999999999999999999999999999999999999875

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>smart00213 UBQ Ubiquitin homologues

Probab=99.39  E-value=7.4e-13  Score=97.50  Aligned_cols=64  Identities=61%  Similarity=0.864  Sum_probs=61.1

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES  445 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~  445 (457)
                      |+|+|++.+ +.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|.|+.+|++|||++|+
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            689999988 6899999999999999999999999999999999999999999999999999885

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.38  E-value=1.2e-12  Score=98.92  Aligned_cols=65  Identities=29%  Similarity=0.364  Sum_probs=59.3

Q ss_pred             EcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecC-CCCcccccCCC-CCCEEEEEE
Q 012736          386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL  451 (457)
Q Consensus       386 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~-d~~tL~~~~i~-~~~~i~l~~  451 (457)
                      +...|.+++++|++++||++||.+|++++|+|+++|+| |+|+.|. |+.+|++||++ +|++++|.+
T Consensus         8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            34567899999999999999999999999999999999 9999996 66899999999 889999864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.38  E-value=1.1e-12  Score=99.08  Aligned_cols=69  Identities=29%  Similarity=0.372  Sum_probs=62.1

Q ss_pred             eEEEEc--CCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEcc-CCCcccccccc-cccceeEEE
Q 012736            2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL   71 (457)
Q Consensus         2 ~i~~~~--~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~-~~~tl~~y~i~-~~sti~l~~   71 (457)
                      .++|++  ..|.+++++|.+++||.+||++|++++|+|++.|+| |+|+.|. |+++|++|++. +++++||.+
T Consensus         2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            466765  578999999999999999999999999999999999 9999995 67899999998 779999864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.33  E-value=1.7e-12  Score=96.39  Aligned_cols=55  Identities=33%  Similarity=0.549  Sum_probs=50.0

Q ss_pred             ec-CCccHHHHHHHHhhhc--CCC-CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          397 VE-SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       397 v~-~~~tV~~lK~~i~~~~--gip-~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      |+ .++||.+||++|+++.  |++ +++|+|+|.|+.|+|++||++|||++|++|+++.
T Consensus        16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            44 4679999999999995  575 9999999999999999999999999999999975

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>smart00213 UBQ Ubiquitin homologues

Probab=99.31  E-value=4.5e-12  Score=93.28  Aligned_cols=64  Identities=61%  Similarity=0.864  Sum_probs=61.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES   65 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~s   65 (457)
                      |+|+|++.+ +++.++|++++||.++|++|+++.|+|++.|+|+|+|+.|.|+.+|++|++.+++
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            899999998 7999999999999999999999999999999999999999999999999998875

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.30  E-value=1.9e-12  Score=96.14  Aligned_cols=55  Identities=33%  Similarity=0.582  Sum_probs=50.2

Q ss_pred             ecc-cccHHHHHHHHhhh--hCCC-CccceEeeccEEccCCCcccccccccccceeEEE
Q 012736           17 VES-SDTIDNVKAKIQDK--EGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (457)
Q Consensus        17 v~~-~dtv~~ik~ki~~~--~~ip-~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~   71 (457)
                      |.| ++||.++|++|+++  +|+| +++|+|+|.|++|+|++||++|+|.+++++|++.
T Consensus        16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            444 79999999999999  4675 9999999999999999999999999999999975

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.28  E-value=3e-12  Score=101.47  Aligned_cols=73  Identities=29%  Similarity=0.414  Sum_probs=64.1

Q ss_pred             eEEEEcCCCcEE-EEEecccccHHHHHHHHh-----hhhCCC--CccceEeeccEEccCCCcccccc------cccccce
Q 012736            2 QIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL   67 (457)
Q Consensus         2 ~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki~-----~~~~ip--~~~q~l~~~g~~L~~~~tl~~y~------i~~~sti   67 (457)
                      .|-|+..+|.-+ +..+.++|||.++|++|+     +++|+|  +++|+|+|+|++|+|++||++|+      +...+|+
T Consensus         6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm   85 (113)
T cd01814           6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM   85 (113)
T ss_pred             EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence            466788888543 478889999999999999     666777  99999999999999999999999      8889999


Q ss_pred             eEEEEec
Q 012736           68 HLVLRLR   74 (457)
Q Consensus        68 ~l~~~~~   74 (457)
                      |+++++.
T Consensus        86 Hvvlr~~   92 (113)
T cd01814          86 HVVVQPP   92 (113)
T ss_pred             EEEecCC
Confidence            9999865

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.28  E-value=2.9e-12  Score=101.54  Aligned_cols=77  Identities=27%  Similarity=0.377  Sum_probs=66.0

Q ss_pred             CcEEEEEEccCCcEE-EEEEeCCCCHHHHHHHHh-----hhhCCC--CCCeEEEecCccccccCcccccc------cccC
Q 012736           75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE  140 (457)
Q Consensus        75 ~~~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~L~~~g~~L~d~~tl~~y~------i~~~  140 (457)
                      +.+.|.++..+|..+ +..+++++||+++|++|+     +++|+|  +++|+|+|+||.|+|++||++|+      +...
T Consensus         3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~   82 (113)
T cd01814           3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV   82 (113)
T ss_pred             ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence            356778888888664 678899999999999999     555666  99999999999999999999999      7777


Q ss_pred             CcceeEEEeec
Q 012736          141 STLHLVLRLRG  151 (457)
Q Consensus       141 s~i~l~~~~~~  151 (457)
                      .++|+++++..
T Consensus        83 ~TmHvvlr~~~   93 (113)
T cd01814          83 ITMHVVVQPPL   93 (113)
T ss_pred             eEEEEEecCCC
Confidence            89999998643

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.27  E-value=7.5e-12  Score=123.18  Aligned_cols=73  Identities=30%  Similarity=0.601  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhC---CCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~---ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+||+++|++++++|++++||.+||++|++..|   +|+++|+|+|+|+.|+|+++|++|+|.+++++++.+..
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence            89999999999999999999999999999999998   99999999999999999999999999999999987753

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.27  E-value=1e-11  Score=122.15  Aligned_cols=72  Identities=31%  Similarity=0.618  Sum_probs=69.5

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcC---CCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      |+|+||+..|+++.++|++++||.+||.+|++..|   +|+++|+|+|+|+.|+|+++|++|||+++++|++.+.
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~   75 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS   75 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence            78999999999999999999999999999999998   9999999999999999999999999999999988765

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.17  E-value=9.9e-11  Score=87.43  Aligned_cols=67  Identities=67%  Similarity=0.992  Sum_probs=63.3

Q ss_pred             EEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      |+..+|+.+.+.+++++||.+||.+|+..+|+|++.|+|.|+|+.|+|+.+|++|++.++++|++..
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            5666789999999999999999999999999999999999999999999999999999999999864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.16  E-value=9.8e-11  Score=88.37  Aligned_cols=71  Identities=34%  Similarity=0.633  Sum_probs=65.9

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCC-CCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      |+|++++.+|+.+.+.|.+++++..|+..+++..|+|+ +.++|.|+|+.|+++.|++++|+++|++|+|.+
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            67999999999999999999999999999999999999 999999999999999999999999999999864

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.15  E-value=9.3e-11  Score=89.93  Aligned_cols=62  Identities=27%  Similarity=0.314  Sum_probs=57.2

Q ss_pred             EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCC-CCcccccCCCCCCEEEEEEec
Q 012736          392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d-~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      ...++|++++||.+||.+|+..+++||++|+|.++|+.|.| ..||++|||.++|+|.|.+..
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide   78 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE   78 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence            46788999999999999999999999999999999999975 569999999999999998753

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.14  E-value=6.9e-11  Score=90.63  Aligned_cols=61  Identities=28%  Similarity=0.334  Sum_probs=56.6

Q ss_pred             EEEEeeCCCcHHHHHHHhhcccCCCCCCceEEecCeec-cCCCcccccccccCceEEEEEEe
Q 012736          317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL  377 (457)
Q Consensus       317 ~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L-~d~~~l~~~~i~~~~~l~l~~~~  377 (457)
                      .+++|++++||++||.+|.+.+++||..|+|.++|..| +|+++|++||+.++++++|..+.
T Consensus        17 ~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide   78 (107)
T cd01795          17 KALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE   78 (107)
T ss_pred             ceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence            56789999999999999999999999999999999988 77899999999999999998653

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.10  E-value=1.1e-10  Score=114.86  Aligned_cols=74  Identities=36%  Similarity=0.565  Sum_probs=70.1

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~  454 (457)
                      .++|.|++.++ .+.+.|..+.||.+||+.|....++|+++++|+|.||.|.|+.||..|||++|+||||+++..
T Consensus        15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence            36799999988 799999999999999999999999999999999999999999999999999999999998753

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.03  E-value=5.2e-10  Score=83.47  Aligned_cols=67  Identities=67%  Similarity=0.992  Sum_probs=63.0

Q ss_pred             EEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEE
Q 012736           81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (457)
Q Consensus        81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~  147 (457)
                      |+..+|+.+.+++.+++||.+||++|+...|+|++.|+|.|+|+.|+|+.+|.+|++.+++.|++..
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            5667899999999999999999999999999999999999999999999999999999999988864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.03  E-value=5.6e-10  Score=84.19  Aligned_cols=71  Identities=34%  Similarity=0.633  Sum_probs=66.2

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCC-ccceEeeccEEccCCCcccccccccccceeEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~-~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~   71 (457)
                      |+|+|+..+|+.+.+.|.+++++..++++..++.|+|+ +..+|+|+|+.|+++.|+++|++.+++++++++
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            68999999999999999999999999999999999999 999999999999999999999999999999864

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.03  E-value=3.6e-10  Score=111.26  Aligned_cols=74  Identities=36%  Similarity=0.565  Sum_probs=69.8

Q ss_pred             ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEec
Q 012736          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (457)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~  226 (457)
                      .+.|+||+... ...+.|..+.||.+||++|...+++|+++++|||+||.|+|+.||..|||++|.||||+.+..
T Consensus        15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence            46789999888 789999999999999999999999999999999999999999999999999999999999854

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.02  E-value=4.6e-10  Score=104.92  Aligned_cols=73  Identities=38%  Similarity=0.667  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhC--CCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~--ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |.|+||++.|++|++++.|+|||.++|.+|+...|  .|+++|.|+|+|+.|.|+.++.+|+|..++-+.+.+.-
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK   75 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSK   75 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEec
Confidence            89999999999999999999999999999999988  99999999999999999999999999999988877753

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.01  E-value=1.4e-09  Score=82.05  Aligned_cols=73  Identities=84%  Similarity=1.127  Sum_probs=69.4

Q ss_pred             eEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      ++++.+..|+++++++.++++|..+|.+|..+.|+|++.|++.+.|+.|.|+.++.+|+|..+++++++.+++
T Consensus         1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~   73 (75)
T KOG0001|consen    1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR   73 (75)
T ss_pred             CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence            4788999999999999999999999999999999999999999999999999999999999999999987754

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=98.95  E-value=9.5e-10  Score=102.82  Aligned_cols=74  Identities=38%  Similarity=0.657  Sum_probs=70.2

Q ss_pred             EEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhC--CCCCCeEEEecCccccccCcccccccccCCcceeEEEee
Q 012736           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (457)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~  150 (457)
                      |.|+||++.+..|++++.+++||.++|.+|+...|  .|+++|+|+|+|+.|.|+.++.+|++.+++.|.+++.-.
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence            68999999999999999999999999999999988  999999999999999999999999999999998887543

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.93  E-value=7.7e-09  Score=77.86  Aligned_cols=74  Identities=84%  Similarity=1.159  Sum_probs=70.1

Q ss_pred             eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      +++.+..|+.+.+.+.+..+|..+|.+|+...|+|++.|++.+.|+.|+|+.+|++|+|..++++++..+++++
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~~   75 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRGG   75 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCCC
Confidence            56777889999999999999999999999999999999999999999999999999999999999999998764

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.90  E-value=6.8e-09  Score=80.47  Aligned_cols=69  Identities=22%  Similarity=0.401  Sum_probs=56.8

Q ss_pred             eeEEEcC-CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE-EcCe-----ec-CCCCcccccCCCCCCEEEEE
Q 012736          382 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       382 ~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~~g~-----~L-~d~~tL~~~~i~~~~~i~l~  450 (457)
                      .|+|... +....+-+++++.||++||++++..+|+||+.|+|. |.|+     .| +|+.+|++||+++|++||+.
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv   79 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI   79 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence            4555543 233455569999999999999999999999999995 7887     56 57779999999999999986

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.88  E-value=5.9e-09  Score=82.25  Aligned_cols=73  Identities=29%  Similarity=0.423  Sum_probs=61.6

Q ss_pred             eeEEEcCCC-CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCC-------CCCCEEEEEEec
Q 012736          382 QIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRL  453 (457)
Q Consensus       382 ~i~v~~~~g-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i-------~~~~~i~l~~r~  453 (457)
                      .+|++-... .++-+++.+++||.+||.+|+.....||++|+|+..+..|+|++||++||+       +...++-|.+|.
T Consensus         2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~   81 (119)
T cd01788           2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS   81 (119)
T ss_pred             ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence            344443333 356678999999999999999999999999999988889999999999999       678899988885


Q ss_pred             C
Q 012736          454 R  454 (457)
Q Consensus       454 ~  454 (457)
                      .
T Consensus        82 ~   82 (119)
T cd01788          82 S   82 (119)
T ss_pred             C
Confidence            3

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.78  E-value=2.7e-08  Score=77.87  Aligned_cols=70  Identities=27%  Similarity=0.565  Sum_probs=56.6

Q ss_pred             eeeEEEcCCC--CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc----Ce---ec-CCCCcccccCCCCCCEEEEE
Q 012736          381 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK---QL-EDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       381 ~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~----g~---~L-~d~~tL~~~~i~~~~~i~l~  450 (457)
                      +.|+|.....  ...+..++++.||++||.+|+..+|+|++.|+|.+.    +.   .+ +|+.+|++||+++|++|++.
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            3566665544  488899999999999999999999999999999886    11   34 46789999999999999985

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.68  E-value=6.9e-08  Score=74.83  Aligned_cols=70  Identities=21%  Similarity=0.379  Sum_probs=57.3

Q ss_pred             EEEEEccC-CcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEE-ecCc-----cc-cccCcccccccccCCcceeEE
Q 012736           78 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL  147 (457)
Q Consensus        78 ~i~vk~~~-g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g~-----~L-~d~~tl~~y~i~~~s~i~l~~  147 (457)
                      .|.|.... .......++++.||.+||++++...|+||..|+|. |.|+     .| +|+.+|+.|++.+|.+||+.-
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            45554332 33455669999999999999999999999999994 7887     45 688999999999999999864

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.63  E-value=1.5e-07  Score=68.09  Aligned_cols=73  Identities=27%  Similarity=0.395  Sum_probs=65.2

Q ss_pred             eeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEEC---C--eecCCCCCccccCcCcCcEEEEEEEec
Q 012736          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRLR  226 (457)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---g--~~L~d~~tL~~y~i~~~~~i~l~~~~~  226 (457)
                      ++|+|+..++...++.|+|..+|..+|++|...+|++- .|||.|.   |  ..|.+..+|++|||..+..|.++.+.+
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p   78 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP   78 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence            47889999999999999999999999999999999998 8999986   2  457899999999999999998876644

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>PLN02560 enoyl-CoA reductase

Probab=98.63  E-value=8.1e-08  Score=92.57  Aligned_cols=70  Identities=31%  Similarity=0.544  Sum_probs=62.1

Q ss_pred             eeeEEEcCCCCEE---EEEecCCccHHHHHHHHhhhcCC-CCCCeEEEEc---C----eecCCCCcccccCCCCCCEEEE
Q 012736          381 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL  449 (457)
Q Consensus       381 ~~i~v~~~~g~~~---~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~l~~~---g----~~L~d~~tL~~~~i~~~~~i~l  449 (457)
                      |+|.|+..+|+.+   ++++++++||+|||.+|+++.++ ++++|||.+.   |    +.|.|+++|++||+++|++|++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            6788998888887   79999999999999999999987 8999999983   3    4889999999999999999876


Q ss_pred             E
Q 012736          450 V  450 (457)
Q Consensus       450 ~  450 (457)
                      .
T Consensus        81 k   81 (308)
T PLN02560         81 K   81 (308)
T ss_pred             E
Confidence            3

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.61  E-value=1.1e-07  Score=75.20  Aligned_cols=72  Identities=32%  Similarity=0.474  Sum_probs=63.0

Q ss_pred             CeEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccc-------ccccceeEEEE
Q 012736            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i-------~~~sti~l~~~   72 (457)
                      |.+|+..-.-| |+.++++++.||.+||++|+.-...|++.|+|+-.+..|+|++||.||++       +.-.++-|.++
T Consensus         1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r   80 (119)
T cd01788           1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR   80 (119)
T ss_pred             CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence            78999987665 67799999999999999999999999999999977888999999999999       45556666655

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.54  E-value=3.2e-07  Score=74.51  Aligned_cols=75  Identities=29%  Similarity=0.492  Sum_probs=56.4

Q ss_pred             cEEEEEEccCCc-EEEEEEeCCCCHHHHHHHHhhhhC-------CCCCCeEEEecCccccccCcccccccccCC------
Q 012736           76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------  141 (457)
Q Consensus        76 ~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~g~~L~d~~tl~~y~i~~~s------  141 (457)
                      .+.|.++..+|+ ...+..++++||++||+.|...+.       ..++..+|+|.||.|+|+.+|++|.+..+.      
T Consensus         2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~   81 (111)
T PF13881_consen    2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT   81 (111)
T ss_dssp             SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred             eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence            456777778998 789999999999999999987542       235679999999999999999999987665      


Q ss_pred             cceeEEEee
Q 012736          142 TLHLVLRLR  150 (457)
Q Consensus       142 ~i~l~~~~~  150 (457)
                      ++|+++++.
T Consensus        82 vmHlvvrp~   90 (111)
T PF13881_consen   82 VMHLVVRPN   90 (111)
T ss_dssp             EEEEEE-SS
T ss_pred             EEEEEecCC
Confidence            678887654

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=7.6e-07  Score=68.89  Aligned_cols=78  Identities=18%  Similarity=0.460  Sum_probs=73.5

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      -+++.|+..+|....+.|..+++...|+..-+++.|++.+..|+.|+|+.+.+.+|-++++.++|+.|.+...+.||+
T Consensus        20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~   97 (99)
T KOG1769|consen   20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF   97 (99)
T ss_pred             eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence            356777777888889999999999999999999999999999999999999999999999999999999999999995

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.52  E-value=5.9e-07  Score=72.97  Aligned_cols=74  Identities=30%  Similarity=0.504  Sum_probs=55.5

Q ss_pred             eeeeEeeccCc-eEEeeecCCchHHHHHHHHhhhhC-------CCCCceEEEECCeecCCCCCccccCcCcCc------E
Q 012736          153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------T  218 (457)
Q Consensus       153 ~~i~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~------~  218 (457)
                      +.+.+...+|. ..++.+++++||++||+.|...|.       ..+...||||.||.|+|+.||+++.+..+.      +
T Consensus         3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v   82 (111)
T PF13881_consen    3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV   82 (111)
T ss_dssp             EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred             EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence            44556667888 678999999999999999987762       235678999999999999999999987765      6


Q ss_pred             EEEEEEec
Q 012736          219 LHLVLRLR  226 (457)
Q Consensus       219 i~l~~~~~  226 (457)
                      +||+++++
T Consensus        83 mHlvvrp~   90 (111)
T PF13881_consen   83 MHLVVRPN   90 (111)
T ss_dssp             EEEEE-SS
T ss_pred             EEEEecCC
Confidence            78888765

>PLN02560 enoyl-CoA reductase

Probab=98.51  E-value=2e-07  Score=89.84  Aligned_cols=69  Identities=32%  Similarity=0.560  Sum_probs=62.6

Q ss_pred             CeEEEEcCCCcEE---EEEecccccHHHHHHHHhhhhCC-CCccceEeec---c----EEccCCCcccccccccccceeE
Q 012736            1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL   69 (457)
Q Consensus         1 ~~i~~~~~~g~~~---~~~v~~~dtv~~ik~ki~~~~~i-p~~~q~l~~~---g----~~L~~~~tl~~y~i~~~sti~l   69 (457)
                      |+|.|+..+|+++   +++++++.||++||.+|+++.++ ++++|+|.+.   |    ..|+|+++|++|++.+++++++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            8999999999998   79999999999999999999986 8999999983   3    3889999999999999998665

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.50  E-value=2.2e-07  Score=70.98  Aligned_cols=71  Identities=28%  Similarity=0.426  Sum_probs=45.5

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC---eec--CCCCcccccCCCCCCEEEEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g---~~L--~d~~tL~~~~i~~~~~i~l~  450 (457)
                      ..|-|-|++.+| .+-+++++++|+.+|+++|++..++|+..|.|+.+.   ..+  .++.||+++|++.||.|+|.
T Consensus         3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            467889999988 678899999999999999999999999999887542   355  46789999999999999974

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.46  E-value=5.9e-07  Score=70.26  Aligned_cols=70  Identities=27%  Similarity=0.544  Sum_probs=55.7

Q ss_pred             EEEEEccCC--cEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEec-C------ccc-cccCcccccccccCCcceeEE
Q 012736           78 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQL-EDGRTLADYNIQKESTLHLVL  147 (457)
Q Consensus        78 ~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-g------~~L-~d~~tl~~y~i~~~s~i~l~~  147 (457)
                      .|+|.....  ......++.+.||.+||.+++...|+|++.|+|.+. .      ..+ +|.++|.+|++.+|.+||+.-
T Consensus         3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D   82 (87)
T PF14560_consen    3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD   82 (87)
T ss_dssp             EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred             EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence            456654443  478899999999999999999999999999999876 1      123 578999999999999998864

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=2.6e-07  Score=98.13  Aligned_cols=72  Identities=35%  Similarity=0.597  Sum_probs=69.5

Q ss_pred             eeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEecC
Q 012736          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (457)
Q Consensus       155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~  227 (457)
                      |.||+++.+..++.+...+||.++|..|..+.+|+.+.||+||.||+|.|++++++|+| +|.+|||+-|++.
T Consensus         5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp   76 (1143)
T KOG4248|consen    5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP   76 (1143)
T ss_pred             eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence            78999999999999999999999999999999999999999999999999999999999 9999999999653

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=3e-07  Score=97.61  Aligned_cols=74  Identities=34%  Similarity=0.579  Sum_probs=69.9

Q ss_pred             eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .+.||+++.+++++.+...+||.+||..|.++.+|+.+.||++|.|+.|.|++++.+||| +|-+|||+-|-..|
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~   77 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ   77 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence            488999999999999999999999999999999999999999999999999999999999 99999999885433

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.38  E-value=8.5e-07  Score=67.60  Aligned_cols=52  Identities=29%  Similarity=0.379  Sum_probs=47.4

Q ss_pred             cCCccHHHHHHHHhhhcC-CCCCCeEEE--EcCeecCCCCcccccCCCCCCEEEE
Q 012736          398 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL  449 (457)
Q Consensus       398 ~~~~tV~~lK~~i~~~~g-ip~~~q~l~--~~g~~L~d~~tL~~~~i~~~~~i~l  449 (457)
                      +++.||++||..|++..+ +++++|+|.  +.|+.|.|+.+|++||+.+|++||+
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            588999999999999875 589999996  7899999999999999999999987

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.31  E-value=1.9e-06  Score=62.51  Aligned_cols=70  Identities=27%  Similarity=0.372  Sum_probs=61.3

Q ss_pred             EEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecC-----ccccccCcccccccccCCcceeEE
Q 012736           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVL  147 (457)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-----~~L~d~~tl~~y~i~~~s~i~l~~  147 (457)
                      ++|+|+..++....+.|+|..+|..+|++|....|++- .|+|.|..     +.|.+..+|++|||-.+..|.+.-
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle   75 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE   75 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence            47899999999999999999999999999999999988 99999862     457899999999998777666653

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.5e-06  Score=85.61  Aligned_cols=71  Identities=24%  Similarity=0.417  Sum_probs=65.8

Q ss_pred             eeeEEEecCCcEEEEE-eeCCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEE
Q 012736          305 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  376 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~-v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~  376 (457)
                      ++|.|+ |.|+.|.++ ++.++|+..+|+++...|||||++|+++.+|+.+.|+..+..++|+++.+++++-+
T Consensus         4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt   75 (473)
T KOG1872|consen    4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGT   75 (473)
T ss_pred             ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecc
Confidence            356665 999999987 99999999999999999999999999999999999999999999999999999843

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.18  E-value=8.1e-06  Score=58.71  Aligned_cols=63  Identities=46%  Similarity=0.697  Sum_probs=59.2

Q ss_pred             CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      +|....+.++++.|+.++|..++++.|++++.+.|+++|..+.+...+.++++.+++.|++..
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            677889999999999999999999999999999999999999999988999999999999864

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=8e-07  Score=62.25  Aligned_cols=69  Identities=26%  Similarity=0.398  Sum_probs=63.8

Q ss_pred             eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012736          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~  450 (457)
                      ++.+.+.-|+...+.+.+++||+|+|..|++.+|-.++..+|--|+..+.|.-+|++|.|.+|..+.+.
T Consensus         3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY   71 (73)
T ss_pred             eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence            456667779999999999999999999999999999999999999999999999999999999988875

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.13  E-value=4.6e-06  Score=63.57  Aligned_cols=52  Identities=29%  Similarity=0.379  Sum_probs=46.3

Q ss_pred             eCCCCHHHHHHHHhhhhC-CCCCCeEEE--ecCccccccCcccccccccCCccee
Q 012736           94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL  145 (457)
Q Consensus        94 ~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~g~~L~d~~tl~~y~i~~~s~i~l  145 (457)
                      +++.||.+||..|+...+ +++++|+|.  +.|+.|.|+.+|++||+.+|+++++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            478899999999998875 689999985  7899999999999999999998775

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.08  E-value=5.9e-06  Score=63.09  Aligned_cols=71  Identities=28%  Similarity=0.426  Sum_probs=43.5

Q ss_pred             CcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEec---Cccc--cccCcccccccccCCcceeE
Q 012736           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV  146 (457)
Q Consensus        75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---g~~L--~d~~tl~~y~i~~~s~i~l~  146 (457)
                      +.|-|.|++.+| ...+++++++|+.+|+++|++..++|.+.|.|+.+   ...+  .++.+++++|+++|+.++|.
T Consensus         3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            456778887777 55789999999999999999999999999988643   2345  46899999999999988764

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=1.5e-05  Score=74.09  Aligned_cols=70  Identities=30%  Similarity=0.599  Sum_probs=61.0

Q ss_pred             eeeEEEcC---CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012736          381 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       381 ~~i~v~~~---~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~  450 (457)
                      |.++|+..   ....+.++|+.+..|.+||+.++.+.|+|+++.+++|.|++|.|+.|+..|++...|.+++.
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~   73 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM   73 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence            44556543   33457889999999999999999999999999999999999999999999999988888866

>cd00196 UBQ Ubiquitin-like proteins

Probab=97.88  E-value=4.1e-05  Score=54.88  Aligned_cols=65  Identities=45%  Similarity=0.653  Sum_probs=59.7

Q ss_pred             cCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEE
Q 012736            7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (457)
Q Consensus         7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~   71 (457)
                      ..+|....+.+.+++|+.++|+++.++.|.+++.|.|+++|..+.+...+.+|.+..++++++..
T Consensus         4 ~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           4 LNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             ecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            34788999999999999999999999999999999999999999998888899999999998753

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.86  E-value=1.6e-05  Score=60.60  Aligned_cols=51  Identities=31%  Similarity=0.423  Sum_probs=45.2

Q ss_pred             EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE-cC-eecCCCCcccccCCC
Q 012736          392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQ  442 (457)
Q Consensus       392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g-~~L~d~~tL~~~~i~  442 (457)
                      ++-+++.++.||.+||.+++....-|+++|+|+. .. ..|+|.+||++||..
T Consensus        13 tif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft   65 (110)
T KOG4495|consen   13 TIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT   65 (110)
T ss_pred             eEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence            5667899999999999999999999999999987 33 577999999999764

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=2e-05  Score=59.34  Aligned_cols=78  Identities=17%  Similarity=0.359  Sum_probs=73.0

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      .+.+.|...+|....+++..+++...|....+.+.|-..+..|+.|+|+.++.++|-++++.++++.|.++....||+
T Consensus        24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~  101 (103)
T COG5227          24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA  101 (103)
T ss_pred             ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence            356677778888999999999999999999999999999999999999999999999999999999999999999995

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=3.1e-05  Score=72.04  Aligned_cols=63  Identities=33%  Similarity=0.651  Sum_probs=57.9

Q ss_pred             cEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeE-EEe
Q 012736           87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL  149 (457)
Q Consensus        87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~-~~~  149 (457)
                      ..++++|+.+..|.+||+-++...|+|+++.+++|+||+|.|+.++..+.+..-+.+|++ +||
T Consensus        14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen   14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence            347888999999999999999999999999999999999999999999999999999987 454

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=97.70  E-value=0.0002  Score=61.45  Aligned_cols=76  Identities=30%  Similarity=0.517  Sum_probs=60.8

Q ss_pred             eeeEEEcCCC----CEEEEEecCCccHHHHHHHHhhhcCCCCCCe-EEEEc-Ceec--CCCCcccccCCCCC----CEEE
Q 012736          381 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQKE----STLH  448 (457)
Q Consensus       381 ~~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~l~~~-g~~L--~d~~tL~~~~i~~~----~~i~  448 (457)
                      |+|+|.+.+|    .++.+.+++++||.+|+..|.+..++|...| .|++. ++.|  .++..+..+.-.+.    -+++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            5799999999    5889999999999999999999999999985 45553 5555  35555666654433    4789


Q ss_pred             EEEecCCC
Q 012736          449 LVLRLRGG  456 (457)
Q Consensus       449 l~~r~~GG  456 (457)
                      +..|++||
T Consensus        81 l~~rl~GG   88 (162)
T PF13019_consen   81 LSLRLRGG   88 (162)
T ss_pred             EEEeccCC
Confidence            99999998

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00065  Score=52.84  Aligned_cols=76  Identities=17%  Similarity=0.448  Sum_probs=68.0

Q ss_pred             eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc
Q 012736          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  304 (457)
Q Consensus       229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~  304 (457)
                      +++.|+..++.++.+.|..+.....|...-|++.|++.+..||.|+|+.+.+.+|-++.+..+++.|.++.-+.++
T Consensus        21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG   96 (99)
T KOG1769|consen   21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG   96 (99)
T ss_pred             EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence            4455777778899999999999999999999999999999999999999999999999999999999887654433

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.57  E-value=0.00022  Score=51.86  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=47.4

Q ss_pred             ccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736          235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  297 (457)
Q Consensus       235 ~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l  297 (457)
                      ..++++.++.+.++.++.++-++.+.++|++++++.|.|+++.++-+.+++.-|+.+|+.+.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            568899999999999999999999999999999999999999999999999999999998754

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.36  E-value=0.0003  Score=53.71  Aligned_cols=61  Identities=30%  Similarity=0.442  Sum_probs=52.7

Q ss_pred             CeEEEEcCCC-cEEEEEecccccHHHHHHHHhhhhCCCCccceEee-cc-EEccCCCccccccc
Q 012736            1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNI   61 (457)
Q Consensus         1 ~~i~~~~~~g-~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~-~g-~~L~~~~tl~~y~i   61 (457)
                      |++|++.-.- .++.+..++|.||.++|.++..-..=|++.|+|+. +- +.|+|++||.|++.
T Consensus         1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf   64 (110)
T KOG4495|consen    1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF   64 (110)
T ss_pred             CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence            6788887554 46779999999999999999999999999999988 33 56899999999965

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00015  Score=50.99  Aligned_cols=67  Identities=27%  Similarity=0.407  Sum_probs=59.5

Q ss_pred             EEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736          231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  297 (457)
Q Consensus       231 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l  297 (457)
                      +.+...-|+.+++..++.|||+++|..|....|-.++...|..+.-.+.|.-+|++|.|.+|-.+.|
T Consensus         4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen    4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL   70 (73)
T ss_pred             ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence            4445556899999999999999999999999999999999988888899999999999999877654

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.20  E-value=0.00092  Score=51.09  Aligned_cols=68  Identities=22%  Similarity=0.396  Sum_probs=48.5

Q ss_pred             eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCC------eEEE-EcCeecCCCCcccccCCCCCCEEEE
Q 012736          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ------QRLI-FAGKQLEDGRTLADYNIQKESTLHL  449 (457)
Q Consensus       382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~------q~l~-~~g~~L~d~~tL~~~~i~~~~~i~l  449 (457)
                      .|.|...+|+.+.+.++.+.+|++|...+.+..+.+...      -.|. -+|..|.++.||+++||.+|+++.+
T Consensus         4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            566666557899999999999999999999998874433      2333 4688999999999999999999986

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.18  E-value=0.0014  Score=47.68  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=47.2

Q ss_pred             cCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012736          387 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  449 (457)
Q Consensus       387 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l  449 (457)
                      ..+++...+.|.|++++.++-+..+.++|++++.-.|.|+++.|+-+.++...|+.+|+.+.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            457888999999999999999999999999999999999999999999999999999999875

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.0012  Score=65.37  Aligned_cols=69  Identities=25%  Similarity=0.444  Sum_probs=62.4

Q ss_pred             eeEEEcCCCCEEEEE-ecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          382 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       382 ~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      .|.|+ ..|+.+.++ ++.++|+..||+++.+.+|+||++|++.+.|..+.|+--+...+|++|.+|.+..
T Consensus         5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG   74 (473)
T KOG1872|consen    5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG   74 (473)
T ss_pred             eEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence            45555 567889888 9999999999999999999999999999999999999889999999999998764

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=96.73  E-value=0.011  Score=45.35  Aligned_cols=72  Identities=22%  Similarity=0.325  Sum_probs=61.0

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCC-eEEE--EcCeecCCC--CcccccCCCCCCEEEEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV  450 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~--~~g~~L~d~--~tL~~~~i~~~~~i~l~  450 (457)
                      ....|-|+.++|+...-...+++||.+|...|......+... ..|.  |-.+.+.++  .||+++|+.+.++|.|.
T Consensus         5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            346788999999999999999999999999999998877765 7775  556788644  59999999999999874

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=96.68  E-value=0.0076  Score=51.86  Aligned_cols=75  Identities=29%  Similarity=0.505  Sum_probs=54.5

Q ss_pred             CeEEEEcCCC----cEEEEEecccccHHHHHHHHhhhhCCCCccc-eEeec-cEEcc--CCCccccccccccc----cee
Q 012736            1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQLE--DGRTLADYNIQKES----TLH   68 (457)
Q Consensus         1 ~~i~~~~~~g----~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q-~l~~~-g~~L~--~~~tl~~y~i~~~s----ti~   68 (457)
                      |+|||.++.|    .++.+.+.++.||.+++..|.+..++|...| .|.+. ++.|.  ++..+..+.-...+    +++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            7999999999    6999999999999999999999999998874 45554 55663  34445555433332    445


Q ss_pred             EEEEecC
Q 012736           69 LVLRLRG   75 (457)
Q Consensus        69 l~~~~~~   75 (457)
                      +..++.+
T Consensus        81 l~~rl~G   87 (162)
T PF13019_consen   81 LSLRLRG   87 (162)
T ss_pred             EEEeccC
Confidence            5555443

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=96.60  E-value=0.0068  Score=46.26  Aligned_cols=68  Identities=24%  Similarity=0.405  Sum_probs=48.7

Q ss_pred             eEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCC------CeEEE-eCCcccCCCccccccccCCCCeEEE
Q 012736          230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI-FAGKQLEDGRTLADYNIQKESTLHL  297 (457)
Q Consensus       230 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~------~q~L~-~~g~~L~d~~tl~~~~i~~~~tl~l  297 (457)
                      .|+|...+|+.+.+.+..+-+|.+|...+.+..+.+..      ...|. -+|..|+++.||++++|.+|+.+++
T Consensus         4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            45555555789999999999999999999998886332      35666 5788999999999999999999876

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.33  E-value=0.0081  Score=47.58  Aligned_cols=57  Identities=21%  Similarity=0.368  Sum_probs=44.0

Q ss_pred             EEEEccCC-cEEEEEEe--CCCCHHHHHHHHhhhhC--CCCCCeEEEecCccccccCccccc
Q 012736           79 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY  135 (457)
Q Consensus        79 i~vk~~~g-~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y  135 (457)
                      |+|++.++ ....+++.  ...||..||..|.+..+  ..-.+++|+|+|+.|.|...|+..
T Consensus         3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~   64 (97)
T PF10302_consen    3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE   64 (97)
T ss_pred             EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence            45565552 34677777  78999999999999873  445668899999999998877764

They contain a characteristic GFDRL sequence motif.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=96.32  E-value=0.029  Score=43.00  Aligned_cols=72  Identities=22%  Similarity=0.325  Sum_probs=59.4

Q ss_pred             cceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCc-eEEE--ECCeecCCC--CCccccCcCcCcEEEEE
Q 012736          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV  222 (457)
Q Consensus       151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~-q~L~--~~g~~L~d~--~tL~~y~i~~~~~i~l~  222 (457)
                      ....|.|+.++|+.+.-...+++||.+|...|......+... ..|+  |-.+.+.+.  .||++.|+.+++++++-
T Consensus         5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            346788899999999999999999999999999887766654 7776  556777544  69999999999998763

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=96.15  E-value=0.037  Score=42.26  Aligned_cols=72  Identities=21%  Similarity=0.228  Sum_probs=58.8

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecCC---CCcccccCCCCCCEEEEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV  450 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~d---~~tL~~~~i~~~~~i~l~  450 (457)
                      +...|-||.++|+...-..++++||++|.+.|....+.+.....|.  |-.+.+.+   +.||.+.|+-..++|.|.
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~   79 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE   79 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence            3467889999999999999999999999999977677776777775  45667764   469999999988888763

Present in FAF1 and Shp1p.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.006  Score=54.01  Aligned_cols=62  Identities=29%  Similarity=0.446  Sum_probs=56.6

Q ss_pred             cCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCccee
Q 012736           84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  145 (457)
Q Consensus        84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l  145 (457)
                      .+++.+.+.+...+||.++|.+++...|+.+..|+++|+|+.|-|...|.+|+|..++...+
T Consensus       154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl  215 (231)
T KOG0013|consen  154 TTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL  215 (231)
T ss_pred             hhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence            36788999999999999999999999999999999999999999999999999999864333

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.06  E-value=0.014  Score=46.23  Aligned_cols=50  Identities=24%  Similarity=0.373  Sum_probs=39.5

Q ss_pred             CceEEeeec--CCchHHHHHHHHhhhhC--CCCCceEEEECCeecCCCCCcccc
Q 012736          162 GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY  211 (457)
Q Consensus       162 g~~~~~~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tL~~y  211 (457)
                      -..+++++.  ...||..||..|.+..+  .....+||||+|+.|.|...|+.-
T Consensus        11 ipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~   64 (97)
T PF10302_consen   11 IPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE   64 (97)
T ss_pred             CCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence            345667766  78899999999999984  344568999999999998777653

They contain a characteristic GFDRL sequence motif.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=96.04  E-value=0.035  Score=42.38  Aligned_cols=71  Identities=21%  Similarity=0.240  Sum_probs=57.7

Q ss_pred             cceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeecCC---CCCccccCcCcCcEEEE
Q 012736          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  221 (457)
Q Consensus       151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~d---~~tL~~y~i~~~~~i~l  221 (457)
                      +...|.|+.++|+.+.-....++||.++.+.+....+.+.....|+  |-.+.+.+   +.||.+.|+.+++++.+
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            3457888999999999999999999999999977666666667775  55667753   47999999998888865

Present in FAF1 and Shp1p.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=95.92  E-value=0.051  Score=41.40  Aligned_cols=68  Identities=22%  Similarity=0.288  Sum_probs=54.4

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCC-CCCCeEEE--EcCeecCC-CCcccccCCCCCCE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKEST  446 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~l~--~~g~~L~d-~~tL~~~~i~~~~~  446 (457)
                      +...|-|+..+|+.....++.++||++|.+-|....+- ....+.|.  |-.+.|.| +.||++.|+.+.+.
T Consensus         3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v   74 (79)
T cd01770           3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI   74 (79)
T ss_pred             CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence            45678999999999999999999999999999987643 23556665  66788864 67999999986443

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=95.90  E-value=0.065  Score=40.54  Aligned_cols=69  Identities=16%  Similarity=0.273  Sum_probs=53.6

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecCC---CCcccccCCCCCCEEEEE
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV  450 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~d---~~tL~~~~i~~~~~i~l~  450 (457)
                      ...|-|+.++|+...-..+.++||.+|.+-|.....- .....|.  |-.+.+.+   +.||.+.|+. .+++.+.
T Consensus         2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~   75 (77)
T cd01767           2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR   75 (77)
T ss_pred             cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence            4568899999999999999999999999999877543 4556665  44567754   6799999999 5555443

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=95.72  E-value=0.075  Score=38.92  Aligned_cols=67  Identities=18%  Similarity=0.245  Sum_probs=55.4

Q ss_pred             eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCC--C---CCeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012736          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--P---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL  449 (457)
Q Consensus       383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip--~---~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l  449 (457)
                      +-++..+|.++.+.++...++..|-..+.+...+.  +   +..+..-.++.|.++..|.+|+|.+|+.+.+
T Consensus         9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417           9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            33456679999999999999999999888877543  2   3457777899999999999999999998865

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=95.65  E-value=0.02  Score=52.13  Aligned_cols=69  Identities=28%  Similarity=0.401  Sum_probs=51.7

Q ss_pred             eeeEEEcCCC--CEEEEEecCCccHHHHHHHHhhh-cCCCCCCeEEEE----cCeecCCCCcccccCCCCCCEEEE
Q 012736          381 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDK-EGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL  449 (457)
Q Consensus       381 ~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~-~gip~~~q~l~~----~g~~L~d~~tL~~~~i~~~~~i~l  449 (457)
                      |.|++...++  .......+...|+.|++.++.++ ..+.+..+|+.+    .|++|-|+.+|++||..+|.+|++
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            5567765554  22335667788999999666655 478886676554    699999999999999999987765

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.36  E-value=0.028  Score=49.91  Aligned_cols=62  Identities=27%  Similarity=0.441  Sum_probs=55.5

Q ss_pred             CCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      ++.+-+.+..-+|+.++|.++.+..|+.+..|+|+|.|..|.|...|..|+|+.|.--.+-.
T Consensus       156 ~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv  217 (231)
T KOG0013|consen  156 REDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV  217 (231)
T ss_pred             hhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence            45677888999999999999999999999999999999999999999999999996554443

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=95.29  E-value=0.16  Score=39.29  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=57.5

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC--eecC--------CCCcccccCCCCCCEEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTLH  448 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g--~~L~--------d~~tL~~~~i~~~~~i~  448 (457)
                      ...+|-|+.++|+...-....++||++|..-|... +-.++...|..+=  +.++        .+.||++.|+.+..+|.
T Consensus         3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~   81 (85)
T cd01774           3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF   81 (85)
T ss_pred             ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence            35678899999999899999999999999999754 5566778887653  6775        25699999999988887


Q ss_pred             EE
Q 012736          449 LV  450 (457)
Q Consensus       449 l~  450 (457)
                      |.
T Consensus        82 V~   83 (85)
T cd01774          82 VQ   83 (85)
T ss_pred             Ee
Confidence            64

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=95.28  E-value=0.13  Score=39.17  Aligned_cols=68  Identities=16%  Similarity=0.317  Sum_probs=54.9

Q ss_pred             eeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeecCC---CCCccccCcCcCcEEEE
Q 012736          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  221 (457)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~d---~~tL~~y~i~~~~~i~l  221 (457)
                      ..|.|+.++|+.+.-..+.++|+.++.+.|....+-+ ....|+  |-.+.+.+   +.||.+.|+.+.+++.|
T Consensus         5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            5678889999999999999999999999998765433 456675  55777853   57999999999888865

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=95.15  E-value=0.11  Score=39.48  Aligned_cols=68  Identities=16%  Similarity=0.320  Sum_probs=55.3

Q ss_pred             eeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeeccC---CCcccccccccCceEEEE
Q 012736          306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV  374 (457)
Q Consensus       306 ~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d---~~~l~~~~i~~~~~l~l~  374 (457)
                      .|.|+..+|..+.-..+.++|+.++.+-+....+-+ ..-.|.  |+.+.+.+   +.+|.+.|+.|..+|.+.
T Consensus         6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~   78 (79)
T cd01772           6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT   78 (79)
T ss_pred             EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence            578899999999999999999999999999765543 323444  78888753   589999999999988874

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=94.99  E-value=0.2  Score=46.11  Aligned_cols=105  Identities=19%  Similarity=0.277  Sum_probs=59.1

Q ss_pred             cEEEEEeeCCCcHHHHHHHhhcccCCCCC-CceEE----ecCe---eccCCCcccccccccCceEEEEEEec--------
Q 012736          315 KTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI----FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------  378 (457)
Q Consensus       315 ~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~-~q~l~----~~g~---~L~d~~~l~~~~i~~~~~l~l~~~~~--------  378 (457)
                      +.+.+.++.+.||.||-..++++.+++.. .++|.    ++++   .++.+..+..+  .....+++..-..        
T Consensus        34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~  111 (213)
T PF14533_consen   34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE  111 (213)
T ss_dssp             -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence            46789999999999999999999999776 34443    3443   46778878777  2222444432111        


Q ss_pred             --CceeeEEEcC-------CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCe
Q 012736          379 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ  421 (457)
Q Consensus       379 --~~~~i~v~~~-------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q  421 (457)
                        ..+-|.|...       -|-.|.+.|.+++|++++|.+|++++|++...+
T Consensus       112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF  163 (213)
T PF14533_consen  112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEF  163 (213)
T ss_dssp             --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHH
T ss_pred             cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhh
Confidence              1233444321       255788899999999999999999999986544

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=94.95  E-value=0.25  Score=37.68  Aligned_cols=73  Identities=16%  Similarity=0.305  Sum_probs=60.9

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCcccccCCCCCCEEEEEEe
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      +..+|.|+.++|+...-....++++++|-..+.. .|.+++...|+  |--+.+.   .+.||.+.|+.+..+|.|.-|
T Consensus         4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r   81 (82)
T cd01773           4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER   81 (82)
T ss_pred             CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence            4568999999999999999999999999999999 57788888876  3345553   346999999999999988654

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=94.93  E-value=0.15  Score=38.55  Aligned_cols=68  Identities=15%  Similarity=0.245  Sum_probs=51.9

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeecc---CCCcccccccccCceEEEE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV  374 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~---d~~~l~~~~i~~~~~l~l~  374 (457)
                      ..|.|+..+|..+.-..+.++|+++|.+-|.....- ...-.|.  |..+.+.   .+.+|.+.|+.+ +.+.+.
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~~   75 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQR   75 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEEE
Confidence            357889999999999999999999999999876543 2333444  6777774   589999999984 554443

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=94.64  E-value=0.29  Score=37.29  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=59.6

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCcccccCCCCCCEEEEEEe
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      +..+|-|+.++|+...-....++++++|..-|... |.+++...|.  |--+.+.   .+.||.+.|+....+|.|--|
T Consensus         3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Veer   80 (80)
T cd01771           3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEER   80 (80)
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEcC
Confidence            45678899999999999999999999999999875 7788888876  3455663   346999999999999987543

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=94.55  E-value=0.21  Score=37.96  Aligned_cols=68  Identities=22%  Similarity=0.285  Sum_probs=53.0

Q ss_pred             ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCC-CCceEEE--ECCeecCC-CCCccccCcCcCcEE
Q 012736          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLED-GRTLADYNIQKESTL  219 (457)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip-~~~q~L~--~~g~~L~d-~~tL~~y~i~~~~~i  219 (457)
                      ...|.|+.++|+.+.-..+.++||.+|.+.|....+-+ .....|.  |-.+.|.| +.||.+.|+.+...+
T Consensus         4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence            45788899999999999999999999999998765432 2446665  56777744 789999999865443

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PRK06437 hypothetical protein; Provisional

Probab=94.55  E-value=0.31  Score=35.75  Aligned_cols=59  Identities=20%  Similarity=0.372  Sum_probs=47.9

Q ss_pred             CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .++...++++.+.||++|-+.    .|+++....+..||..+.     .++-+++|+.|.+.--.-||
T Consensus         9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG   67 (67)
T PRK06437          9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG   67 (67)
T ss_pred             CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence            345577888999999998765    488999999999999997     55567789999988777776

>COG5417 Uncharacterized small protein [Function unknown]

Probab=94.50  E-value=0.2  Score=36.78  Aligned_cols=67  Identities=18%  Similarity=0.225  Sum_probs=55.1

Q ss_pred             EEEEccCCceEEEEeecCccHHHHHHHHhhhcCC--CC---CCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736          231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PP---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL  297 (457)
Q Consensus       231 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~i--p~---~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l  297 (457)
                      |-.+..+|.++.+.+....++..+...+.+.+.+  ++   ++.+.+-.++.|.++..|.+|+|.+|+.+.+
T Consensus         9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417           9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            3345678999999999999999999988887764  22   2456777899999999999999999998754

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=94.43  E-value=0.29  Score=37.84  Aligned_cols=70  Identities=11%  Similarity=0.182  Sum_probs=56.0

Q ss_pred             cceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEEC--CeecC--------CCCCccccCcCcCcEEE
Q 012736          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE--------DGRTLADYNIQKESTLH  220 (457)
Q Consensus       151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--g~~L~--------d~~tL~~y~i~~~~~i~  220 (457)
                      +.+.|.++.++|+.+.-....++||++|...|.. .+..++.+.|+.+  .+.+.        .+.||.+.|+.+..++.
T Consensus         3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~   81 (85)
T cd01774           3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF   81 (85)
T ss_pred             ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence            3567889999999999999999999999999964 4455577888754  46774        36799999999887775


Q ss_pred             E
Q 012736          221 L  221 (457)
Q Consensus       221 l  221 (457)
                      +
T Consensus        82 V   82 (85)
T cd01774          82 V   82 (85)
T ss_pred             E
Confidence            4

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=94.18  E-value=0.19  Score=38.30  Aligned_cols=69  Identities=14%  Similarity=0.366  Sum_probs=62.1

Q ss_pred             eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  297 (457)
Q Consensus       229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l  297 (457)
                      ++..|...+|.++-+.+....+...|-..-+.+.|=.-+..|++|+|+..+.++|-.+.+..+++.|..
T Consensus        25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa   93 (103)
T COG5227          25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA   93 (103)
T ss_pred             cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence            455566788999999999999999999999999999999999999999999999999999998887644

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=94.16  E-value=0.38  Score=36.49  Aligned_cols=59  Identities=20%  Similarity=0.320  Sum_probs=42.2

Q ss_pred             eEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012736          240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  298 (457)
Q Consensus       240 ~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~  298 (457)
                      .+...++-...+..||..++.+.+++.+.+.+...+..|+++++|.+.|++-+.++.+.
T Consensus         4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln   62 (88)
T PF11620_consen    4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN   62 (88)
T ss_dssp             EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred             eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence            34556677789999999999999999999999999988999999999999988887663

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=94.15  E-value=0.39  Score=44.14  Aligned_cols=103  Identities=20%  Similarity=0.302  Sum_probs=57.9

Q ss_pred             ceEEeeecCCchHHHHHHHHhhhhCCCCC---ceEE--EECCee---cCCCCCccccCcCcCcEEEEEEEec--------
Q 012736          163 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRL--IFAGKQ---LEDGRTLADYNIQKESTLHLVLRLR--------  226 (457)
Q Consensus       163 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~---~q~L--~~~g~~---L~d~~tL~~y~i~~~~~i~l~~~~~--------  226 (457)
                      +.+.+.|+.+.||.+|.++++.+.+++.+   ..|+  +++++.   +..+.++.+.  .+...+.+-.-+.        
T Consensus        34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~  111 (213)
T PF14533_consen   34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE  111 (213)
T ss_dssp             -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence            45788899999999999999999998765   3444  356654   5667777665  3333333321111        


Q ss_pred             --CCeeEEEEc-------cCCceEEEEeecCccHHHHHHHHhhhcCCCCC
Q 012736          227 --GGMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD  267 (457)
Q Consensus       227 --~~~~i~v~~-------~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~  267 (457)
                        +...|.|.-       ..|-.+.+.|.++.|+.++|++|++++|++..
T Consensus       112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k  161 (213)
T PF14533_consen  112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK  161 (213)
T ss_dssp             --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred             cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence              112233322       23778889999999999999999999998654

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=93.85  E-value=0.41  Score=36.57  Aligned_cols=70  Identities=16%  Similarity=0.320  Sum_probs=59.4

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL  375 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~~  375 (457)
                      -.|.|+..+|+...-..+..+|+.+|-.-+.. .|.+++...|+  |.-+.+   +.+.+|.+.|+.+..+|.+..
T Consensus         6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~   80 (82)
T cd01773           6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE   80 (82)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence            36889999999999999999999999999998 46787877777  777766   445899999999999988764

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=93.57  E-value=0.22  Score=44.31  Aligned_cols=58  Identities=19%  Similarity=0.349  Sum_probs=48.8

Q ss_pred             EEEEecCCccHHHHHHHHhhhcCCCCCCeEEE-EcC-----eecC-CCCcccccCCCCCCEEEEE
Q 012736          393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~~g-----~~L~-d~~tL~~~~i~~~~~i~l~  450 (457)
                      ..-+.+++.||++||.+++-.+|.+++.+.|. |.|     -.|. ++..|..|+..+|..||+.
T Consensus        15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi   79 (234)
T KOG3206|consen   15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI   79 (234)
T ss_pred             hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence            45567899999999999999999999999885 444     2565 5568999999999999875

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=93.48  E-value=0.44  Score=36.32  Aligned_cols=69  Identities=20%  Similarity=0.331  Sum_probs=57.6

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  374 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~  374 (457)
                      ..|.++..+|..+.-..+.++|+++|-.-+..+ |.++..-.|+  |.-+.+   +.+.+|.+.|+.+..+|.+.
T Consensus         5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve   78 (80)
T cd01771           5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE   78 (80)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence            467889999999999999999999999999875 6666666776  777776   34679999999998888774

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=92.60  E-value=1.2  Score=32.91  Aligned_cols=66  Identities=12%  Similarity=0.195  Sum_probs=50.2

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|.+.... ....++++++.||.+|-+.+    ++++..-.+..||..+..     +.-+++|+.|.+.-..-||
T Consensus         5 m~v~vng~~-~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG   70 (70)
T PRK08364          5 IRVKVIGRG-IEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG   70 (70)
T ss_pred             EEEEEeccc-cceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence            566665332 25678889999999998776    777877888899999854     5557789999998877776

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=92.41  E-value=0.97  Score=42.61  Aligned_cols=107  Identities=17%  Similarity=0.342  Sum_probs=73.9

Q ss_pred             EEeeCCCcHHHHHHHhhcccCCCCCCceEEecC------eeccCCCcccccccccCceEEEEEEecC-------------
Q 012736          319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG-------------  379 (457)
Q Consensus       319 l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g------~~L~d~~~l~~~~i~~~~~l~l~~~~~~-------------  379 (457)
                      +.|+.+++|.++-..|.++.|+|++..-.+|..      ..++.+.++....+..|+.|-+......             
T Consensus        89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~  168 (249)
T PF12436_consen   89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE  168 (249)
T ss_dssp             EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred             EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence            678999999999999999999999976666532      2468999999999999999998864321             


Q ss_pred             -------ceeeEEEc---CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE
Q 012736          380 -------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF  425 (457)
Q Consensus       380 -------~~~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~  425 (457)
                             .+.|.++.   ..+..+++.++..+|-.+|-++|++..|++|+..+++-
T Consensus       169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~  224 (249)
T PF12436_consen  169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT  224 (249)
T ss_dssp             HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred             HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence                   14555543   33457999999999999999999999999999998863

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=92.21  E-value=0.62  Score=35.21  Aligned_cols=60  Identities=13%  Similarity=0.243  Sum_probs=47.6

Q ss_pred             EEEEEecCCccHHHHHHHHhhhcCC----CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          392 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       392 ~~~l~v~~~~tV~~lK~~i~~~~gi----p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...++++.+.||.+|.+.+....+-    ......+..||+...     .+.-+++|+.|.+.-...||
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG   80 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence            3567788899999999999987642    344567788999887     34557889999999999888

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=92.12  E-value=1.1  Score=42.15  Aligned_cols=122  Identities=17%  Similarity=0.362  Sum_probs=78.4

Q ss_pred             ceeeeEeecc--CceE----EeeecCCchHHHHHHHHhhhhCCCCCceEEEEC----C--eecCCCCCccccCcCcCcEE
Q 012736          152 GMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G--KQLEDGRTLADYNIQKESTL  219 (457)
Q Consensus       152 ~~~i~v~~~~--g~~~----~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----g--~~L~d~~tL~~y~i~~~~~i  219 (457)
                      .+.|++|-.+  .+++    .+.|+..++|.++-..|.+..|+|++...++|.    +  ..++...|+....+.+|+.|
T Consensus        68 ~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi  147 (249)
T PF12436_consen   68 DILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDII  147 (249)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEE
T ss_pred             cEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEE
Confidence            3455666543  2332    356889999999999999999999988777764    2  44688899999999999999


Q ss_pred             EEEEEecC--------------------CeeEEEEc---cCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEe
Q 012736          220 HLVLRLRG--------------------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF  273 (457)
Q Consensus       220 ~l~~~~~~--------------------~~~i~v~~---~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~  273 (457)
                      .+-.....                    .+.|.+..   ..+..+++.+....|-.+|-+.|.++.+++|..-+|.-
T Consensus       148 ~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~  224 (249)
T PF12436_consen  148 CFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT  224 (249)
T ss_dssp             EEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred             EEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence            76554321                    13333333   33458999999999999999999999999999888774

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=92.00  E-value=0.27  Score=37.05  Aligned_cols=56  Identities=23%  Similarity=0.331  Sum_probs=47.1

Q ss_pred             ecCCccHHHHHHHHhhhcC-CCCCCeEEEEcCeecCCCCccccc-CCCCCCEEEEEEe
Q 012736          397 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLR  452 (457)
Q Consensus       397 v~~~~tV~~lK~~i~~~~g-ip~~~q~l~~~g~~L~d~~tL~~~-~i~~~~~i~l~~r  452 (457)
                      |+++++|.|++..+..... ..-.+..|.++|+.|++...|++. |+++|++|.++..
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~   58 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE   58 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence            5789999999999998864 566777899999999988888776 5888999988754

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=91.58  E-value=1.1  Score=33.83  Aligned_cols=68  Identities=25%  Similarity=0.352  Sum_probs=50.4

Q ss_pred             EEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEEE----cC--eecCCCCcccccCCCCCCEEEEEEe
Q 012736          385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF----AG--KQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~----~g--~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      |..++|...+++|++++|+.+|-..|++..|+... .+-|.+    +|  .-|+.+++|.++.........+.+|
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr   75 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR   75 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence            45688989999999999999999999999998643 346777    22  2467888999998873444444433

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=91.51  E-value=0.69  Score=35.10  Aligned_cols=61  Identities=20%  Similarity=0.328  Sum_probs=44.7

Q ss_pred             EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      .+...++-..++..||..++.+.++..+.-.+......|+++++|-+-+|+-.-++.+++-
T Consensus         4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ   64 (88)
T PF11620_consen    4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ   64 (88)
T ss_dssp             EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred             eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence            3455678889999999999999999999999988998899999999999998888888764

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=91.47  E-value=1.1  Score=32.51  Aligned_cols=65  Identities=18%  Similarity=0.398  Sum_probs=46.2

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|.+   +|+.+.+  + ..|+.+|...+    ++++....+-.|+..+.. ..-++.-+++||.|.+.-..-||
T Consensus         1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~GG   65 (65)
T PRK06488          1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQGG   65 (65)
T ss_pred             CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccCC
Confidence            44544   4655555  3 46999998765    677766677888888863 23456667889999999888887

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=90.76  E-value=1.4  Score=33.26  Aligned_cols=58  Identities=26%  Similarity=0.358  Sum_probs=46.1

Q ss_pred             EEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEe----CCc--ccCCCccccccccC
Q 012736          233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----AGK--QLEDGRTLADYNIQ  290 (457)
Q Consensus       233 v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~----~g~--~L~d~~tl~~~~i~  290 (457)
                      |..++|.+.+++++++.|+.+|-++|+++.||...+ .-|.+    +|.  =|+.++++..+...
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~   65 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK   65 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence            456889999999999999999999999999986554 55767    121  26888899998777

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=90.26  E-value=0.58  Score=35.29  Aligned_cols=57  Identities=23%  Similarity=0.312  Sum_probs=45.7

Q ss_pred             ecCCchHHHHHHHHhhhhC-CCCCceEEEECCeecCCCCCcccc-CcCcCcEEEEEEEe
Q 012736          169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL  225 (457)
Q Consensus       169 v~~~~tV~~lK~~i~~~~g-ip~~~q~L~~~g~~L~d~~tL~~y-~i~~~~~i~l~~~~  225 (457)
                      |.+.++|.+++..+..... ..-....|.++|..|++...+++. |+.+++++.++..+
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p   59 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP   59 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence            5688999999999987643 445567889999999999888887 58888888877554

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=90.24  E-value=1.1  Score=34.09  Aligned_cols=61  Identities=16%  Similarity=0.255  Sum_probs=43.8

Q ss_pred             CEEEEEecCCccHHHHHHHHhhhc-CCCC--CCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          391 KTITLEVESSDTIDNVKAKIQDKE-GIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       391 ~~~~l~v~~~~tV~~lK~~i~~~~-gip~--~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ....++++.+.|+++|+..+.... ++..  ....+..||+...++     .-+++|+.|.+.-...||
T Consensus        19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~-----~~l~dgDeVai~PpvsGG   82 (82)
T PLN02799         19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES-----AALKDGDELAIIPPISGG   82 (82)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC-----cCcCCCCEEEEeCCCCCC
Confidence            456788888999999999997765 1111  122466788876533     446779999999888887

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=90.14  E-value=0.91  Score=34.98  Aligned_cols=43  Identities=14%  Similarity=0.286  Sum_probs=37.7

Q ss_pred             eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCC---CCeEEEE
Q 012736          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF  425 (457)
Q Consensus       383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~---~~q~l~~  425 (457)
                      ..+++++|+++-+.+.|+..+.+|++.|+++.|+..   ....|.|
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            356788999999999999999999999999999997   4666666

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=89.61  E-value=0.49  Score=43.39  Aligned_cols=69  Identities=26%  Similarity=0.346  Sum_probs=49.4

Q ss_pred             eeEEEecCC-cEEE-EEeeCCCcHHHHHHHhh-cccCCCCCCceEE----ecCeeccCCCcccccccccCceEEEE
Q 012736          306 QIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQ-DKEGIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHLV  374 (457)
Q Consensus       306 ~i~i~~~~g-~~~~-l~v~~~~Tv~~lK~~I~-~~~~ip~~~q~l~----~~g~~L~d~~~l~~~~i~~~~~l~l~  374 (457)
                      .|++..-.+ ..++ ...+.+.|+.|+++.|. +...+-+.++++.    -+|..|-|+.+|++|+..++.++++.
T Consensus         2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK   77 (297)
T KOG1639|consen    2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK   77 (297)
T ss_pred             ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence            344433332 3444 66788999999996655 5566777555544    57888999999999999999888875

>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures

Probab=89.16  E-value=0.12  Score=49.29  Aligned_cols=57  Identities=21%  Similarity=0.454  Sum_probs=0.0

Q ss_pred             CccHHHHHHHHhh----------hcCCCCCCeE-----EEEcCeecCCCCcccccCCC-------CCCEEEEEEecCCC
Q 012736          400 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGG  456 (457)
Q Consensus       400 ~~tV~~lK~~i~~----------~~gip~~~q~-----l~~~g~~L~d~~tL~~~~i~-------~~~~i~l~~r~~GG  456 (457)
                      +++|.++|..++.          .+++|.+..+     |.|+-+++.|++||.+..-.       .+.++.+.+-..||
T Consensus       103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGG  181 (309)
T PF12754_consen  103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGG  181 (309)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECC
Confidence            6899999999999          8999999999     99999999999998887554       47788888888887

Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=88.91  E-value=1.7  Score=32.92  Aligned_cols=37  Identities=19%  Similarity=0.355  Sum_probs=34.6

Q ss_pred             EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCe
Q 012736          392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK  428 (457)
Q Consensus       392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~  428 (457)
                      ++.+.|+++.+..+|..+|.++.++|+++..|.|...
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde   48 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE   48 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence            7999999999999999999999999999999999544

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=88.61  E-value=1.2  Score=34.24  Aligned_cols=44  Identities=14%  Similarity=0.280  Sum_probs=38.1

Q ss_pred             EEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCC---CCeEEEeC
Q 012736          231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFA  274 (457)
Q Consensus       231 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~---~~q~L~~~  274 (457)
                      ...+.+.|+++++.+.++..+.+|++.|.+++|+..   ....|.|-
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl   49 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV   49 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence            346788999999999999999999999999999876   46777773

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=88.22  E-value=3  Score=30.20  Aligned_cols=58  Identities=17%  Similarity=0.345  Sum_probs=43.5

Q ss_pred             EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .++++.+.|+.++-..    .++++....+..+|..+..+. -.+.-+++|+.|.+..-.-||
T Consensus         9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~vgGG   66 (66)
T PRK05659          9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHALGGG   66 (66)
T ss_pred             EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEecCC
Confidence            4567788899988765    588898888999998776332 233346789999998887776

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=88.02  E-value=4.3  Score=29.26  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=40.4

Q ss_pred             EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .++++++.|+++|...+.    ++ ....+..+|..+..+. -.+.-+++||.|.+.-...||
T Consensus         9 ~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG   65 (65)
T PRK06944          9 TLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG   65 (65)
T ss_pred             EEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence            456778899999988763    33 2456778888875321 223337789999999888887

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=87.89  E-value=3  Score=29.38  Aligned_cols=55  Identities=20%  Similarity=0.303  Sum_probs=41.4

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      |+|++.   |  ..+++..+.|+.+||..+..      +.=.++++|-+..++..|.     +||.|.+.-
T Consensus         1 M~I~vN---~--k~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~-----e~D~v~~Ik   55 (57)
T PF14453_consen    1 MKIKVN---E--KEIETEENTTLFELRKESKP------DADIVILNGFPTKEDIELK-----EGDEVFLIK   55 (57)
T ss_pred             CEEEEC---C--EEEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccccC-----CCCEEEEEe
Confidence            556655   3  56788999999999999765      3338899999998876655     578887654

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=87.59  E-value=1.5  Score=32.67  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=40.3

Q ss_pred             EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeecc
Q 012736            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (457)
Q Consensus         3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g   47 (457)
                      +.|-.+||++-.+.|.|+.||.++=+++-++.|+.++.-.+++.|
T Consensus         2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            567789999999999999999999999999999999887777654

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=87.23  E-value=0.29  Score=46.72  Aligned_cols=72  Identities=26%  Similarity=0.380  Sum_probs=53.3

Q ss_pred             cEEEEEEccCC--cEEEEEEeCCCCHHHHHHHHhhhhC--CCCCCeEEEecCccccccCcccccccc--cCCcceeEE
Q 012736           76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVL  147 (457)
Q Consensus        76 ~~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y~i~--~~s~i~l~~  147 (457)
                      +..++||..+.  +...|..+...||++||..++....  --+.+|||+|.||.|.|...+++.-++  ...+.||+.
T Consensus         9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc   86 (391)
T KOG4583|consen    9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC   86 (391)
T ss_pred             ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence            45667777664  4577788889999999999887653  224579999999999999999987543  334555554

>smart00455 RBD Raf-like Ras-binding domain

Probab=86.94  E-value=1.7  Score=32.11  Aligned_cols=45  Identities=20%  Similarity=0.279  Sum_probs=39.7

Q ss_pred             EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeecc
Q 012736            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (457)
Q Consensus         3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g   47 (457)
                      ..|-.++|++..+.+.|+.||.++=+++-++.|+.++.=.++..|
T Consensus         2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            456789999999999999999999999999999998876676654

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=86.91  E-value=1.8  Score=32.21  Aligned_cols=44  Identities=23%  Similarity=0.330  Sum_probs=39.0

Q ss_pred             EEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC
Q 012736          384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  427 (457)
Q Consensus       384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g  427 (457)
                      .|-.++|+...+.|.|++|+.|+-+++.++.|+.++.-.++..|
T Consensus         3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            45567899999999999999999999999999999988877653

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=86.90  E-value=3.5  Score=29.88  Aligned_cols=57  Identities=19%  Similarity=0.310  Sum_probs=43.2

Q ss_pred             EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..+++++.|+.+|-..    .++++...-+.+++..+..+. .+.+ +++||.|.+..-.-||
T Consensus         9 ~~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG   65 (65)
T PRK05863          9 QVEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG   65 (65)
T ss_pred             EEEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence            3455678898887665    588999999999999876432 1235 8999999998877776

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=86.41  E-value=6  Score=28.74  Aligned_cols=66  Identities=15%  Similarity=0.259  Sum_probs=46.3

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|+|.   |+  .+++..+.|+.+|...+    +.+.....+-.|+..+..+ .-+..-+++||.|.+.-..-||
T Consensus         1 m~i~vN---g~--~~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG   66 (66)
T PRK08053          1 MQILFN---DQ--PMQCAAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_pred             CEEEEC---Ce--EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence            445444   53  45567788999988763    5566667888899988622 2334457889999999888887

>smart00455 RBD Raf-like Ras-binding domain

Probab=86.33  E-value=2.2  Score=31.57  Aligned_cols=48  Identities=23%  Similarity=0.336  Sum_probs=41.5

Q ss_pred             EEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC--eecC
Q 012736          384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE  431 (457)
Q Consensus       384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g--~~L~  431 (457)
                      .+-.++|+...+.+.|+.|+.|+-..+.++.|+.++.-.++..|  ++|+
T Consensus         3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ld   52 (70)
T smart00455        3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLD   52 (70)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccee
Confidence            34567899999999999999999999999999999999888844  4555

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=86.18  E-value=4.5  Score=30.57  Aligned_cols=59  Identities=17%  Similarity=0.299  Sum_probs=45.5

Q ss_pred             EEEEecCC-ccHHHHHHHHhhhcC-C-C-CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          393 ITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       393 ~~l~v~~~-~tV~~lK~~i~~~~g-i-p-~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..++++.+ .||.+|+..+.++.+ + . .....+..|++...+     +.-+++|+.|.+.-+..||
T Consensus        18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG   80 (80)
T TIGR01682        18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG   80 (80)
T ss_pred             EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence            47788876 899999999999874 1 1 133467778888775     4567789999999988888

The C-terminal Gly-Gly of this model is critical to function.

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=85.78  E-value=4.1  Score=29.38  Aligned_cols=58  Identities=19%  Similarity=0.363  Sum_probs=44.1

Q ss_pred             EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .++++.+.|+.+|...+    ++++....+..||+.+..+ .-.++-+++||.|.+.-..-||
T Consensus         7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG   64 (64)
T TIGR01683         7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG   64 (64)
T ss_pred             EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence            45567788999998865    5778888888999988532 2334568889999998888887

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>PRK07440 hypothetical protein; Provisional

Probab=85.50  E-value=6.5  Score=29.00  Aligned_cols=67  Identities=19%  Similarity=0.328  Sum_probs=49.8

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .|+|.+.   |+  ..++..+.||.+|-.    ..++++...-+-.||..+.-+ .-++.-+++||.|.+..-.-||
T Consensus         4 ~m~i~vN---G~--~~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG   70 (70)
T PRK07440          4 PITLQVN---GE--TRTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG   70 (70)
T ss_pred             ceEEEEC---CE--EEEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence            4666655   54  366678899998875    457888888899999988632 2445557889999998888777

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=85.46  E-value=3.8  Score=29.61  Aligned_cols=59  Identities=20%  Similarity=0.371  Sum_probs=45.2

Q ss_pred             EEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..++++.+.|+.+|...+    ++++....+..+|+.+..+. -.+.-+++||.|.+.-...||
T Consensus         7 ~~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~-~~~~~L~~gD~V~ii~~v~GG   65 (65)
T cd00565           7 EPREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRSE-WASTPLQDGDRIEIVTAVGGG   65 (65)
T ss_pred             eEEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHHH-cCceecCCCCEEEEEEeccCC
Confidence            345667789999998876    47788888899999886541 223447889999999888887

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=85.13  E-value=4  Score=31.38  Aligned_cols=67  Identities=12%  Similarity=0.237  Sum_probs=49.7

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .|+|+|.   |+  ..+++.+.||.+|-..    .++++...-+-.||..+.. ..-+.+-+++||.|.+..-.-||
T Consensus        18 ~m~I~VN---G~--~~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgGG   84 (84)
T PRK06083         18 LITISIN---DQ--SIQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAGG   84 (84)
T ss_pred             eEEEEEC---Ce--EEEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence            4555554   54  4556778899988775    4788888888899999853 34556668889999998887777

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=84.65  E-value=3.9  Score=30.43  Aligned_cols=63  Identities=14%  Similarity=0.249  Sum_probs=50.8

Q ss_pred             EEEEEecCCccHHHHHHHHhhhcCC--CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          392 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       392 ~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...+.+....||.+|.+.+.....-  ......+..||+...+  .-.+.-+++|+.|.+.-..-||
T Consensus        13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG   77 (77)
T PF02597_consen   13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG   77 (77)
T ss_dssp             EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred             CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence            5778889999999999999888631  2367788899999988  2445556789999999888887

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=84.58  E-value=8.2  Score=29.85  Aligned_cols=65  Identities=20%  Similarity=0.225  Sum_probs=44.3

Q ss_pred             CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE-E---cCe-ecC-CCCcccccCCCCCCEEEEEEecCCC
Q 012736          391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F---AGK-QLE-DGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       391 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~---~g~-~L~-d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..++..++..+||..+...+.+.+.| ...-||- +   ++. .|. .+.|+.+.|+.+|-+|-+-.|-.=|
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG   84 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG   84 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence            36778899999999999999999999 5556663 2   222 454 4469999999999999888775433

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=84.34  E-value=3.8  Score=31.01  Aligned_cols=44  Identities=18%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             EEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCc
Q 012736           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK  124 (457)
Q Consensus        79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~  124 (457)
                      |.|... + ++.|.|++..+..+|.++|.++.++|++...|.|...
T Consensus         5 vKV~f~-~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde   48 (80)
T cd06406           5 VKVHFK-Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE   48 (80)
T ss_pred             EEEEEE-E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence            444433 3 8999999999999999999999999999989988743

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>smart00666 PB1 PB1 domain

Probab=84.03  E-value=3.9  Score=30.86  Aligned_cols=45  Identities=16%  Similarity=0.334  Sum_probs=37.9

Q ss_pred             eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC
Q 012736          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  427 (457)
Q Consensus       382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g  427 (457)
                      .+.++. .|.++.+.++++.|..+|+.+|+.+.+++.....|.|..
T Consensus         3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D   47 (81)
T smart00666        3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD   47 (81)
T ss_pred             cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence            344554 567899999999999999999999999998888888863

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=83.54  E-value=9  Score=29.44  Aligned_cols=61  Identities=11%  Similarity=0.264  Sum_probs=45.6

Q ss_pred             EEEEEecCCccHHHHHHHHhhhcCC-----------CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          392 TITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       392 ~~~l~v~~~~tV~~lK~~i~~~~gi-----------p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...++++ +.||.+|.+.+.+...-           .-....+..||+...++..   .-+++|+.|.+.-+..||
T Consensus        17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG   88 (88)
T TIGR01687        17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG   88 (88)
T ss_pred             eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence            4567776 89999999999988631           0123567778888865432   567889999999999988

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor

Probab=83.21  E-value=3.1  Score=30.97  Aligned_cols=50  Identities=8%  Similarity=0.139  Sum_probs=41.2

Q ss_pred             EEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCC
Q 012736          232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG  281 (457)
Q Consensus       232 ~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~  281 (457)
                      .|-.++|+..++.+.+++|+.++=+.++++.++.|..+.|-..-..++|.
T Consensus         3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~   52 (77)
T cd01818           3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH   52 (77)
T ss_pred             EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence            35568899999999999999999999999999999987776544444443

Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=82.69  E-value=0.55  Score=44.91  Aligned_cols=74  Identities=27%  Similarity=0.408  Sum_probs=53.8

Q ss_pred             ceeeeEeeccC--ceEEeeecCCchHHHHHHHHhhhhC-CC-CCceEEEECCeecCCCCCccccCcC--cCcEEEEEEEe
Q 012736          152 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVLRL  225 (457)
Q Consensus       152 ~~~i~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~g-ip-~~~q~L~~~g~~L~d~~tL~~y~i~--~~~~i~l~~~~  225 (457)
                      .+.+.+|..+.  +.+.+..+...||++||..++...- =| ..+|||+|.||.|.|...+.|.=.+  ...+.|++...
T Consensus         9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcns   88 (391)
T KOG4583|consen    9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNS   88 (391)
T ss_pred             ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCC
Confidence            34566776654  5678888899999999999987653 22 3569999999999999888876443  33455666543

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=82.48  E-value=3.4  Score=31.62  Aligned_cols=42  Identities=12%  Similarity=0.154  Sum_probs=35.3

Q ss_pred             cCCceEEEEeecCccHHHHHHHHhhhcCCCC-CCeEEEeCCcc
Q 012736          236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ  277 (457)
Q Consensus       236 ~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~-~~q~L~~~g~~  277 (457)
                      .+|..+.+.+.++.+..+|+++|.+++++.. ....|.|....
T Consensus         7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde   49 (82)
T cd06407           7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD   49 (82)
T ss_pred             eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence            5678899999999999999999999999865 56777776554

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00295 B41 Band 4

Probab=82.43  E-value=10  Score=34.13  Aligned_cols=74  Identities=27%  Similarity=0.363  Sum_probs=53.2

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCC-eEEEEc---C---eecCCCCcccccCCC-CCCEEEEEE
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G---KQLEDGRTLADYNIQ-KESTLHLVL  451 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~~---g---~~L~d~~tL~~~~i~-~~~~i~l~~  451 (457)
                      ++.+.|..++|....+.+++++|+.++...++.+.|++... +-|.+-   +   ..++...+|.+.... ....+++..
T Consensus         3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~   82 (207)
T smart00295        3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV   82 (207)
T ss_pred             cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence            45677888899999999999999999999999999996422 233331   1   346667777777665 345555555


Q ss_pred             ec
Q 012736          452 RL  453 (457)
Q Consensus       452 r~  453 (457)
                      |.
T Consensus        83 r~   84 (207)
T smart00295       83 KF   84 (207)
T ss_pred             EE
Confidence            53

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=82.32  E-value=3  Score=37.29  Aligned_cols=60  Identities=18%  Similarity=0.318  Sum_probs=49.7

Q ss_pred             EEEEeeCCCcHHHHHHHhhcccCCCCCCceEE-ecC-----eec-cCCCcccccccccCceEEEEEE
Q 012736          317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLR  376 (457)
Q Consensus       317 ~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~-~~g-----~~L-~d~~~l~~~~i~~~~~l~l~~~  376 (457)
                      ..-+.+++.|+.++|.+++-.+|.+++.+.|. |.|     ..| +++..|..|+...+-.||++-.
T Consensus        15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~   81 (234)
T KOG3206|consen   15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS   81 (234)
T ss_pred             hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence            34667899999999999999999999999988 433     345 6678899999999999998743

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=82.30  E-value=5  Score=29.71  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=35.7

Q ss_pred             EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeecc
Q 012736            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (457)
Q Consensus         3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g   47 (457)
                      +.|-.++|++-.+.|.|+.||.++=+++-++.|+.++.=.++..|
T Consensus         3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~   47 (71)
T PF02196_consen    3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG   47 (71)
T ss_dssp             EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            567789999999999999999999999999999998874554434

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=80.84  E-value=2.5  Score=44.59  Aligned_cols=182  Identities=18%  Similarity=0.190  Sum_probs=103.3

Q ss_pred             eEEeeecCCchHHHHHHHHhhhhCCCCCceEEEE----CCeec--CCCCCccccCcCcCcEEEEEE--Eec-CCeeEEEE
Q 012736          164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLVL--RLR-GGMQIFVK  234 (457)
Q Consensus       164 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~----~g~~L--~d~~tL~~y~i~~~~~i~l~~--~~~-~~~~i~v~  234 (457)
                      .+.+.|+...+++.+|++|++..+++.+..++..    +|..+  .++.||..+  .++.+|.+-+  .+. +...+.|.
T Consensus       878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI~  955 (1203)
T KOG4598|consen  878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKII  955 (1203)
T ss_pred             heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEEE
Confidence            4678899999999999999999999999988752    23333  456677654  4455554332  221 22222222


Q ss_pred             cc---CCc------eEEEEeecCccHHHHHHHHhhhcC--------CCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736          235 TL---TGK------TITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  297 (457)
Q Consensus       235 ~~---~g~------~~~~~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l  297 (457)
                      ..   ..+      -+...+..+.|+++.|..+-.++.        +.....|+...++. ..++-+.++++-.++.=+.
T Consensus       956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~-~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen  956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGV-GPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred             eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCc-CCceEecCcchhhhhhhhh
Confidence            11   111      234567899999999887665443        34444444444332 2333444443332221100


Q ss_pred             EE---------------eecCceeeEEEecCCcE-----EEEEeeCCCcHHHHHHHhhcccCCCCCCceEE
Q 012736          298 VL---------------RLRGGMQIFVKTLTGKT-----ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI  348 (457)
Q Consensus       298 ~~---------------~~~~~~~i~i~~~~g~~-----~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~  348 (457)
                      ..               +.-...+|+++-|.--+     |.=.+-+...+.+|+..+.+-.|||.++-.++
T Consensus      1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred             hHHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhh
Confidence            00               11122356666554321     22122356678999999999999999975544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	457
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		3e-80
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		3e-80
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		3e-80
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		3e-80
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-79
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-79
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-79
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-79
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-79
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		2e-79
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		2e-79
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		2e-79
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		2e-79
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		2e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		9e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		9e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		9e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		9e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		9e-79
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		4e-78
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		4e-78
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		4e-78
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		4e-78
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		4e-78
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-37
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		1e-37
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		1e-37
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		1e-37
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		1e-37
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		5e-36
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		4e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		4e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		4e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		4e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		4e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		5e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		5e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		5e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		5e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		5e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		6e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		7e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		7e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		7e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		7e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		7e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		8e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		8e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		8e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		8e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		8e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		8e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		9e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		8e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		9e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		9e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		9e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		9e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		9e-37
3jvz_X	81	E2~ubiquitin-Hect Length = 81		1e-36
3jvz_X	81	E2~ubiquitin-Hect Length = 81		1e-36
3jvz_X	81	E2~ubiquitin-Hect Length = 81		1e-36
3jvz_X	81	E2~ubiquitin-Hect Length = 81		1e-36
3jvz_X	81	E2~ubiquitin-Hect Length = 81		1e-36
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		3e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		3e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		3e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		3e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		3e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		3e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		4e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		4e-36
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		4e-36
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		4e-36
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		4e-36
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		4e-36
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		4e-36
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		4e-36
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		4e-36
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		4e-36
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		4e-36
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		4e-36
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		4e-36
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		4e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		5e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		5e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		5e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		5e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		5e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		5e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		5e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		5e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		5e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		5e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		5e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		5e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		7e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		7e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		7e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		7e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		7e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		7e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		8e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		8e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		8e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		8e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		8e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		8e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		8e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		8e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		8e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		8e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		8e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		8e-36
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		8e-36
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		8e-36
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		8e-36
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		8e-36
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		8e-36
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		1e-35
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-35
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-35
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-35
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-35
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		3e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		6e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		7e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		7e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		7e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		7e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		7e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		7e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		7e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		7e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		7e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		7e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		7e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-35
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		2e-34
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		2e-34
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		2e-34
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		2e-34
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		2e-34
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		3e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		3e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		4e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		4e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		4e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		4e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		4e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		4e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		4e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		4e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		4e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		4e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		4e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		4e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		4e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		9e-34
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		1e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		4e-33
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		2e-32
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		2e-32
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		2e-32
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		2e-32
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		2e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		5e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		5e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		5e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		5e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		5e-32
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		1e-30
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		1e-30
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		1e-30
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		1e-30
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		2e-30
4hk2_A	78	U7ub25.2540 Length = 78		7e-30
4hk2_A	78	U7ub25.2540 Length = 78		7e-30
4hk2_A	78	U7ub25.2540 Length = 78		7e-30
4hk2_A	78	U7ub25.2540 Length = 78		7e-30
4hk2_A	78	U7ub25.2540 Length = 78		7e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-30
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-25
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		7e-22
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		7e-22
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		7e-22
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		7e-22
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		7e-22
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-21
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-20
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-20
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-20
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-20
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		2e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		8e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		8e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		8e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		8e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		8e-20
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-19
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-19
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-19
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-19
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		3e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		3e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		3e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		3e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		3e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		4e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		4e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		4e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		4e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		4e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		4e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		4e-19
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		1e-18
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		1e-18
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		1e-18
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		1e-18
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		1e-18
3sdl_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		6e-12
3sdl_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		6e-12
3sdl_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		6e-12
3sdl_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		6e-12
3r66_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		1e-11
3r66_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		1e-11
3r66_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		1e-11
3r66_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		1e-11
3rt3_B	159	Complex Of Influenza Virus Protein With Host Anti-V		2e-11
3rt3_B	159	Complex Of Influenza Virus Protein With Host Anti-V		2e-11
3rt3_B	159	Complex Of Influenza Virus Protein With Host Anti-V		2e-11
3rt3_B	159	Complex Of Influenza Virus Protein With Host Anti-V		2e-11
3pse_B	156	Structure Of A Viral Otu Domain Protease Bound To I		7e-11
3pse_B	156	Structure Of A Viral Otu Domain Protease Bound To I		7e-11
3pse_B	156	Structure Of A Viral Otu Domain Protease Bound To I		7e-11
3pse_B	156	Structure Of A Viral Otu Domain Protease Bound To I		7e-11
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		1e-10
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		1e-10
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		1e-10
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		1e-10
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		1e-10
1z2m_A	155	Crystal Structure Of Isg15, The Interferon-Induced		4e-10
1z2m_A	155	Crystal Structure Of Isg15, The Interferon-Induced		4e-10
1z2m_A	155	Crystal Structure Of Isg15, The Interferon-Induced		4e-10
1z2m_A	155	Crystal Structure Of Isg15, The Interferon-Induced		4e-10
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		2e-08
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		2e-08
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		2e-08
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		2e-08
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		2e-08
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-07
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-07
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-07
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-07
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-07
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		2e-07
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		2e-07
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		2e-07
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		2e-07
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		5e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		4e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		4e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		4e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		4e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		4e-07
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		8e-07
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		8e-07
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		8e-07
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		8e-07
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		8e-07
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		1e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		2e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		4e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		4e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		4e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		4e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		4e-06
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		5e-06
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		5e-06
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		5e-06
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		5e-06
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		5e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		5e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		5e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		5e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		5e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		5e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		8e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		8e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		8e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		8e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		8e-06
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		2e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		6e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		9e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		9e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		9e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		9e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		9e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		9e-05
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		2e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		5e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		6e-04

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/154 (95%), Positives = 151/154 (98%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 194
           YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQR
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 120
Query: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/154 (95%), Positives = 151/154 (98%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 211 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 270
           YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQR
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 120
Query: 271 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/154 (95%), Positives = 151/154 (98%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 287 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 346
           YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQR
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 120
Query: 347 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/154 (95%), Positives = 151/154 (98%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 363 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 422
           YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQR
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 120
Query: 423 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (750), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (750), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (750), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (750), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (750), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  290 bits (743), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 2   QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 122 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  290 bits (743), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 198 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  290 bits (743), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 273
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 274 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  290 bits (743), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 350 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  290 bits (743), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 426 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (738), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (738), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (738), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 303
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (738), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (738), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (390), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGM 77
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (390), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGM 153
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (390), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGGM 229
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (390), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGGM 305
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (390), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGGM 381
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (389), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGGF 457
           IQKESTLHLVLRLRGG 
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/83 (91%), Positives = 78/83 (93%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 136 NIQKESTLHLVLRLRGGMQIFVK 158
           NIQKESTLHLVLRLRGG Q F K
Sbjct: 165 NIQKESTLHLVLRLRGGGQTFTK 187

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/83 (91%), Positives = 78/83 (93%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 212 NIQKESTLHLVLRLRGGMQIFVK 234
           NIQKESTLHLVLRLRGG Q F K
Sbjct: 165 NIQKESTLHLVLRLRGGGQTFTK 187

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/83 (91%), Positives = 78/83 (93%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 288 NIQKESTLHLVLRLRGGMQIFVK 310
           NIQKESTLHLVLRLRGG Q F K
Sbjct: 165 NIQKESTLHLVLRLRGGGQTFTK 187

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/83 (91%), Positives = 78/83 (93%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 364 NIQKESTLHLVLRLRGGMQIFVK 386
           NIQKESTLHLVLRLRGG Q F K
Sbjct: 165 NIQKESTLHLVLRLRGGGQTFTK 187

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRGG
Sbjct: 165 NIQKESTLHLVLRLRGG 181

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 288 NIQKESTLHLVLRLRGG 304
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 364 NIQKESTLHLVLRLRGG 380
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1  MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 61 IQKESTLHLVLRLRGGM 77
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 137 IQKESTLHLVLRLRGGM 153
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 213 IQKESTLHLVLRLRGGM 229
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 289 IQKESTLHLVLRLRGGM 305
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 365 IQKESTLHLVLRLRGGM 381
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 288 NIQKESTLHLVLRLRGG 304
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 364 NIQKESTLHLVLRLRGG 380
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLR-GGMQIFVKTLTGK 87
          IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61 IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLR-GGMQIFVKTLTGK 163
           IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61  IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLR-GGMQIFVKTLTGK 239
           IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61  IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLR-GGMQIFVKTLTGK 315
           IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61  IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLR-GGMQIFVKTLTGK 391
           IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61  IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 81 IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 288 NIQKESTLHLVLRLRGG 304
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 364 NIQKESTLHLVLRLRGG 380
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 287 YNIQKESTLHLVLRLRGG 304
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 363 YNIQKESTLHLVLRLRGG 380
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 439 YNIQKESTLHLVLRLRGG 456
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 83 IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 63 IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLH VLRLRGG
Sbjct: 61 IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 134 DYNIQKESTLHLVLRLRG 151
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 210 DYNIQKESTLHLVLRLRG 227
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 286 DYNIQKESTLHLVLRLRG 303
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 362 DYNIQKESTLHLVLRLRG 379
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 438 DYNIQKESTLHLVLRLRG 455
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 64 IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 64 IQKESTLHLVLRLRGG 79

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRG 151
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRG 227
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 288 NIQKESTLHLVLRLRG 303
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 364 NIQKESTLHLVLRLRG 379
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 440 NIQKESTLHLVLRLRG 455
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8  MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 68 IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 64 IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score =  147 bits (372), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/78 (91%), Positives = 75/78 (96%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+D
Sbjct: 8   GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSD 67
Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQ+ESTLHLVLRLRGG
Sbjct: 68  YNIQRESTLHLVLRLRGG 85

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score =  147 bits (372), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/78 (91%), Positives = 75/78 (96%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+D
Sbjct: 8   GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSD 67
Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQ+ESTLHLVLRLRGG
Sbjct: 68  YNIQRESTLHLVLRLRGG 85

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score =  147 bits (372), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/78 (91%), Positives = 75/78 (96%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+D
Sbjct: 8   GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSD 67
Query: 287 YNIQKESTLHLVLRLRGG 304
           YNIQ+ESTLHLVLRLRGG
Sbjct: 68  YNIQRESTLHLVLRLRGG 85

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score =  147 bits (372), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/78 (91%), Positives = 75/78 (96%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+D
Sbjct: 8   GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSD 67
Query: 363 YNIQKESTLHLVLRLRGG 380
           YNIQ+ESTLHLVLRLRGG
Sbjct: 68  YNIQRESTLHLVLRLRGG 85

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score =  147 bits (372), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/78 (91%), Positives = 75/78 (96%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+D
Sbjct: 8   GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSD 67
Query: 439 YNIQKESTLHLVLRLRGG 456
           YNIQ+ESTLHLVLRLRGG
Sbjct: 68  YNIQRESTLHLVLRLRGG 85

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRG 303
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRG 379
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRG 455
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRG 303
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRG 379
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRG 455
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 133 ADYNIQKESTLHLVLRLR 150
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 209 ADYNIQKESTLHLVLRLR 226
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 285 ADYNIQKESTLHLVLRLR 302
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 361 ADYNIQKESTLHLVLRLR 378
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 437 ADYNIQKESTLHLVLRLR 454
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRG 303
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRG 379
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRG 455
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRG 303
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRG 379
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRG 455
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
          QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62 QKESTLHLVLRLRGG 76
          QKESTLHLVLRLRGG
Sbjct: 62 QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 138 QKESTLHLVLRLRGG 152
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 214 QKESTLHLVLRLRGG 228
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 290 QKESTLHLVLRLRGG 304
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 366 QKESTLHLVLRLRGG 380
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 441
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 442 QKESTLHLVLRLRGG 456
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKEST HLVLRLRGG
Sbjct: 61 IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 134 DYNIQKESTLHLVLRLR 150
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 210 DYNIQKESTLHLVLRLR 226
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 286 DYNIQKESTLHLVLRLR 302
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 362 DYNIQKESTLHLVLRLR 378
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 438 DYNIQKESTLHLVLRLR 454
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 134 DYNIQKESTLHLVLRLR 150
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 210 DYNIQKESTLHLVLRLR 226
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 286 DYNIQKESTLHLVLRLR 302
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 362 DYNIQKESTLHLVLRLR 378
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 438 DYNIQKESTLHLVLRLR 454
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 55
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 56 LADYNIQKESTLHLVLRLRGG 76
          L+DYNIQKESTLHLVLRLRGG
Sbjct: 61 LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 131
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 132 LADYNIQKESTLHLVLRLRGG 152
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 207
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 208 LADYNIQKESTLHLVLRLRGG 228
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 283
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 284 LADYNIQKESTLHLVLRLRGG 304
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 359
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 360 LADYNIQKESTLHLVLRLRGG 380
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 435
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 436 LADYNIQKESTLHLVLRLRGG 456
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 75/78 (96%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
            MQIFVKTLTGKTITLEVE +D+ID +KAKIQ+KEGIPPDQQRLIFAGKQLE+G+TL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDY 62
Query: 440 NIQKESTLHLVLRLRGGF 457
           NIQKESTLHLVLRLRGG+
Sbjct: 63  NIQKESTLHLVLRLRGGY 80

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRL 73
          IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRL 149
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRL 225
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRL 301
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRL 377
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRL 453
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKEST+HLVLRLRGG
Sbjct: 61 IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 288 NIQKESTLHLVLRLRGG 304
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 364 NIQKESTLHLVLRLRGG 380
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 1  MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
          MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1  MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 54 RTLADYNIQKESTLHLVLRLRGG 76
          RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 77  MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 129
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 130 RTLADYNIQKESTLHLVLRLRGG 152
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 153 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 205
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 206 RTLADYNIQKESTLHLVLRLRGG 228
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 229 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 281
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 282 RTLADYNIQKESTLHLVLRLRGG 304
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 305 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 357
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 358 RTLADYNIQKESTLHLVLRLRGG 380
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 381 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 433
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 434 RTLADYNIQKESTLHLVLRLRGG 456
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLV 70
          IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLV 146
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLV 222
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLV 298
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLV 374
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLV 450
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLR 72
          IQKESTLHLVLR
Sbjct: 61 IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLR 148
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLR 224
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLR 300
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLR 376
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLR 452
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          +QKEST+HLVLRLRGG
Sbjct: 61 LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 1  MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
          MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1  MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 53 GRTLADYNIQKESTLHLVLRLRGG 76
          GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 77  MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 129 GRTLADYNIQKESTLHLVLRLRGG 152
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 153 MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 205 GRTLADYNIQKESTLHLVLRLRGG 228
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 229 MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 281 GRTLADYNIQKESTLHLVLRLRGG 304
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 305 MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 356
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 357 GRTLADYNIQKESTLHLVLRLRGG 380
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 381 MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 432
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 433 GRTLADYNIQKESTLHLVLRLRGG 456
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 52
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 53 GRTLADYNIQKESTLHLVLRLRGG 76
          GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 128
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 129 GRTLADYNIQKESTLHLVLRLRGG 152
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 204
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 205 GRTLADYNIQKESTLHLVLRLRGG 228
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 280
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 281 GRTLADYNIQKESTLHLVLRLRGG 304
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 356
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 357 GRTLADYNIQKESTLHLVLRLRGG 380
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 432
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 433 GRTLADYNIQKESTLHLVLRLRGG 456
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 288 NIQKESTLHLVLRLRGG 304
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 364 NIQKESTLHLVLRLRGG 380
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLR 150
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 211 YNIQKESTLHLVLRLR 226
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 287 YNIQKESTLHLVLRLR 302
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 363 YNIQKESTLHLVLRLR 378
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 439 YNIQKESTLHLVLRLR 454
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 135 YNIQKESTLHLVLRLRGGM 153
           YN+QKESTLHLVLRLRGG+
Sbjct: 64  YNVQKESTLHLVLRLRGGV 82

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 211 YNIQKESTLHLVLRLRGGM 229
           YN+QKESTLHLVLRLRGG+
Sbjct: 64  YNVQKESTLHLVLRLRGGV 82

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 287 YNIQKESTLHLVLRLRGGM 305
           YN+QKESTLHLVLRLRGG+
Sbjct: 64  YNVQKESTLHLVLRLRGGV 82

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 363 YNIQKESTLHLVLRLRGGM 381
           YN+QKESTLHLVLRLRGG+
Sbjct: 64  YNVQKESTLHLVLRLRGGV 82

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 69/78 (88%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 439 YNIQKESTLHLVLRLRGG 456
           YN+QKESTLHLVLRLRGG
Sbjct: 64  YNVQKESTLHLVLRLRGG 81

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 287 YNIQKESTLHLVLRLRGG 304
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 363 YNIQKESTLHLVLRLRGG 380
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 439 YNIQKESTLHLVLRLRGG 456
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTL 67
          IQK STL
Sbjct: 64 IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTL 143
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTL 219
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 289 IQKESTL 295
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 365 IQKESTL 371
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 441 IQKESTL 447
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKEST 66
          I   S 
Sbjct: 64 IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKEST 142
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKEST 218
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 289 IQKEST 294
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 365 IQKEST 370
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 441 IQKEST 446
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 127
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 203
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 279
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 355
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 431
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          I+  S LHLVL LRGG
Sbjct: 61 IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 289 IQKESTLHLVLRLRGG 304
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 365 IQKESTLHLVLRLRGG 380
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 441 IQKESTLHLVLRLRGG 456
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 287 YNIQKESTLHLVLRLRGG 304
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 363 YNIQKESTLHLVLRLRGG 380
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 439 YNIQKESTLHLVLRLRGG 456
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 287 YNIQKESTLHLVLRLRGG 304
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 363 YNIQKESTLHLVLRLRGG 380
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 439 YNIQKESTLHLVLRLRGG 456
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 287 YNIQKESTLHLVLRLRGG 304
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 363 YNIQKESTLHLVLRLRGG 380
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 439 YNIQKESTLHLVLRLRGG 456
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 287 YNIQKESTLHLVLRLRGG 304
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 363 YNIQKESTLHLVLRLRGG 380
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 439 YNIQKESTLHLVLRLRGG 456
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 62 ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 289 IQKESTLHLVLRLRGG 304
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 365 IQKESTLHLVLRLRGG 380
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 289 IQKESTLHLVLRLRGG 304
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 365 IQKESTLHLVLRLRGG 380
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 67 ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 289 IQKESTLHLVLRLRGG 304
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 365 IQKESTLHLVLRLRGG 380
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 289 IQKESTLHLVLRLRGG 304
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 365 IQKESTLHLVLRLRGG 380
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 287 YNIQKESTLHLVLRLRGG 304
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 363 YNIQKESTLHLVLRLRGG 380
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 439 YNIQKESTLHLVLRLRGG 456
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3SDL|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza B Virus, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3SDL|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza B Virus, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 210 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3SDL|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza B Virus, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3SDL|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza B Virus, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 362 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza Virus B, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKXDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza Virus B, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 210 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKXDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza Virus B, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKXDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza Virus B, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 362 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKXDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral Factor Length = 159

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral Factor Length = 159

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 210 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral Factor Length = 159

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral Factor Length = 159

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 362 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To Interferon- Stimulated Gene 15 (Isg15) Length = 156

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227
             L F GK LED   L +Y ++  ST+ + LRLRG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156

>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To Interferon- Stimulated Gene 15 (Isg15) Length = 156

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 210 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 303
             L F GK LED   L +Y ++  ST+ + LRLRG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156

>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To Interferon- Stimulated Gene 15 (Isg15) Length = 156

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379
             L F GK LED   L +Y ++  ST+ + LRLRG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156

>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To Interferon- Stimulated Gene 15 (Isg15) Length = 156

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 362 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455
             L F GK LED   L +Y ++  ST+ + LRLRG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 136 NIQKESTLHLVLR 148
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 212 NIQKESTLHLVLR 224
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 288 NIQKESTLHLVLR 300
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 364 NIQKESTLHLVLR 376
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 440 NIQKESTLHLVLR 452
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced Ubiquitin Cross Reactive Protein Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226
             L F GK LED   L +Y ++  ST+ + LRLR
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155

>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced Ubiquitin Cross Reactive Protein Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 210 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 302
             L F GK LED   L +Y ++  ST+ + LRLR
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155

>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced Ubiquitin Cross Reactive Protein Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 378
             L F GK LED   L +Y ++  ST+ + LRLR
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155

>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced Ubiquitin Cross Reactive Protein Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 362 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454
             L F GK LED   L +Y ++  ST+ + LRLR
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 135 YNIQKESTLHLVLR 148
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 211 YNIQKESTLHLVLR 224
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 287 YNIQKESTLHLVLR 300
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 363 YNIQKESTLHLVLR 376
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 439 YNIQKESTLHLVLR 452
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 135 YNIQKESTLHLVLR 148
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 211 YNIQKESTLHLVLR 224
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 287 YNIQKESTLHLVLR 300
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 363 YNIQKESTLHLVLR 376
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 439 YNIQKESTLHLVLR 452
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 136 NIQKESTLHLVLRLR 150
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 212 NIQKESTLHLVLRLR 226
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 288 NIQKESTLHLVLRLR 302
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 364 NIQKESTLHLVLRLR 378
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 440 NIQKESTLHLVLRLR 454
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 61 IQKESTLHLVLRLRGGMQ 78
          ++  ST+ + LRLRGG++
Sbjct: 65 LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 137 IQKESTLHLVLRLRGGMQ 154
           ++  ST+ + LRLRGG++
Sbjct: 65  LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 213 IQKESTLHLVLRLRGGMQ 230
           ++  ST+ + LRLRGG++
Sbjct: 65  LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 289 IQKESTLHLVLRLRGGMQ 306
           ++  ST+ + LRLRGG++
Sbjct: 65  LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 365 IQKESTLHLVLRLRGGMQ 382
           ++  ST+ + LRLRGG++
Sbjct: 65  LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 441 IQKESTLHLVLRLRGGF 457
           ++  ST+ + LRLRGG 
Sbjct: 65  LKPLSTVFMNLRLRGGL 81

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 75  GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 133 ADYNIQKESTLHLVLR 148
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 151 GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 209 ADYNIQKESTLHLVLR 224
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 227 GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 285 ADYNIQKESTLHLVLR 300
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 303 GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 361 ADYNIQKESTLHLVLR 376
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 379 GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 437 ADYNIQKESTLHLVLR 452
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 134 DYNIQKESTLHLVLRLRGG 152
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 210 DYNIQKESTLHLVLRLRGG 228
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 286 DYNIQKESTLHLVLRLRGG 304
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 362 DYNIQKESTLHLVLRLRGG 380
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 438 DYNIQKESTLHLVLRLRGG 456
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 61 IQKESTLHLVLRLR 74
          ++++S +H+V R R
Sbjct: 61 LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 137 IQKESTLHLVLRLR 150
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 213 IQKESTLHLVLRLR 226
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 289 IQKESTLHLVLRLR 302
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 365 IQKESTLHLVLRLR 378
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 441 IQKESTLHLVLRLR 454
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 61 IQKESTLHLVLRLRG 75
          ++  ST+ + LRLRG
Sbjct: 65 LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 137 IQKESTLHLVLRLRG 151
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 213 IQKESTLHLVLRLRG 227
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 289 IQKESTLHLVLRLRG 303
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 365 IQKESTLHLVLRLRG 379
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 441 IQKESTLHLVLRLRG 455
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 56  LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 114
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 115 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 190
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 208 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 266
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 267 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 284 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 342
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 343 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 360 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 418
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 419 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 76  GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 134 DYNIQKESTLHLVLRLRGG 152
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 152 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 210 DYNIQKESTLHLVLRLRGG 228
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 228 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 286 DYNIQKESTLHLVLRLRGG 304
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 304 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 362 DYNIQKESTLHLVLRLRGG 380
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 380 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 438 DYNIQKESTLHLVLRLRGG 456
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 136 NIQKESTLHL 145
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 212 NIQKESTLHL 221
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 288 NIQKESTLHL 297
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 364 NIQKESTLHL 373
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 440 NIQKESTLHL 449
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 68 HLVLRLRG 75
          HL L+ RG
Sbjct: 79 HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 144 HLVLRLRG 151
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 220 HLVLRLRG 227
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 296 HLVLRLRG 303
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 371
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 372 HLVLRLRG 379
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 447
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 448 HLVLRLRG 455
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 136 NIQKESTLHLVLRLRGG 152
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 212 NIQKESTLHLVLRLRGG 228
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 288 NIQKESTLHLVLRLRGG 304
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 364 NIQKESTLHLVLRLRGG 380
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 440 NIQKESTLHLVLRLRGG 456
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 8   LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 68  HLVLRLRGG 76
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 144 HLVLRLRGG 152
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 220 HLVLRLRGG 228
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 296 HLVLRLRGG 304
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 371
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 372 HLVLRLRGG 380
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 447
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 448 HLVLRLRGG 456
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6  LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 61 IQKESTLHLVLR 72
          +  +  +HLV R
Sbjct: 66 VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 137 IQKESTLHLVLR 148
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 213 IQKESTLHLVLR 224
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 289 IQKESTLHLVLR 300
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 365 IQKESTLHLVLR 376
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 441 IQKESTLHLVLR 452
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 61 IQKESTLHLVL 71
          I K+  + +++
Sbjct: 84 IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 137 IQKESTLHLVL 147
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 213 IQKESTLHLVL 223
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 289 IQKESTLHLVL 299
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 365 IQKESTLHLVL 375
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 441 IQKESTLHLVL 451
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 136 NIQKESTLHLVLR 148
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 212 NIQKESTLHLVLR 224
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 288 NIQKESTLHLVLR 300
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 364 NIQKESTLHLVLR 376
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 440 NIQKESTLHLVLR 452
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
          + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18 VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 91  LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 58 DYNI 61
          +Y I
Sbjct: 64 EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 134 DYNI 137
           +Y I
Sbjct: 64  EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 210 DYNI 213
           +Y I
Sbjct: 64  EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 285
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 286 DYNI 289
           +Y I
Sbjct: 64  EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 361
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 362 DYNI 365
           +Y I
Sbjct: 64  EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 437
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 438 DYNI 441
           +Y I
Sbjct: 64  EYKI 67

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 DYNI 61
          +Y I
Sbjct: 61 EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 134 DYNI 137
           +Y I
Sbjct: 61  EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 210 DYNI 213
           +Y I
Sbjct: 61  EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 285
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 286 DYNI 289
           +Y I
Sbjct: 61  EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 361
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 362 DYNI 365
           +Y I
Sbjct: 61  EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 437
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 438 DYNI 441
           +Y I
Sbjct: 61  EYKI 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	457
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	1e-78
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	1e-78
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	1e-78
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	1e-78
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	7e-78
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	2e-33
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	3e-77
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	3e-77
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	3e-77
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	2e-76
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	8e-76
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	7e-77
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	7e-77
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	7e-77
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	7e-77
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	7e-77
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	6e-33
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-66
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-66
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-66
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-66
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	8e-66
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	8e-66
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	8e-66
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	8e-66
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	7e-63
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	9e-62
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	3e-55
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	3e-55
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	3e-55
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	3e-55
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	1e-41
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-52
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-52
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-52
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-52
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-52
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	2e-40
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-51
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-51
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-51
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-51
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-49
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	3e-46
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-50
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-50
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-50
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-50
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-50
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	2e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-49
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	3e-47
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	9e-49
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	9e-49
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	9e-49
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	9e-49
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	9e-49
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	4e-44
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-48
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-48
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-48
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-48
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-48
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-45
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	4e-48
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-47
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-47
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-47
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-47
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-47
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-44
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-47
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-47
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-47
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-47
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-47
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	8e-44
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-46
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-46
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-46
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-46
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	1e-45
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-45
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	3e-46
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	3e-46
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	3e-46
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	3e-46
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	3e-46
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-45
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	7e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	7e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	7e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	7e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	7e-46
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	4e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	5e-45
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	1e-43
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-45
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-45
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-45
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-45
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-45
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-44
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	1e-43
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	1e-43
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	1e-43
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	1e-43
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	1e-43
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	2e-42
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	2e-43
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	2e-43
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	2e-43
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	2e-43
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	2e-43
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	1e-41
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-43
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-43
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-43
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-43
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-43
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	2e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	3e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	3e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	3e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	3e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	3e-42
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	7e-42
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-41
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	3e-40
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	6e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	8e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	8e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	8e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	8e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	8e-41
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	6e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-40
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	3e-40
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-39
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-39
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-39
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-39
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-39
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	2e-38
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-39
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-39
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-39
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-39
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-39
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-37
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-39
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-39
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-39
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-39
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-39
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	6e-39
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	3e-38
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-37
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-36
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	5e-34
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	5e-34
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	5e-34
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	5e-34
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	7e-34
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-33
1we6_A	111	Splicing factor, putative; structural genomics, ub	5e-33
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-28
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-28
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-28
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-28
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-28
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	4e-28
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-27
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	5e-23
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	5e-23
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	5e-23
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	5e-23
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	3e-22
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	3e-22
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-20
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-20
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-20
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-20
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-20
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	5e-19
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-17
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	4e-15
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-14
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-14
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-14
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-14
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-14
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	4e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	6e-13
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	1e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-12
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-11
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-12
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	1e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	2e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	8e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	8e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	8e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	8e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	8e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	2e-10
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	3e-07
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	4e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	9e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	9e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	9e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	9e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	9e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	8e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	9e-06
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	1e-05
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	1e-05
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	1e-05
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	1e-05
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	1e-05
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	6e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	4e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	7e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	7e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	7e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	7e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	7e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	6e-05
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	1e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	3e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	4e-04

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  241 bits (615), Expect = 1e-78
 Identities = 149/167 (89%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121
               +  LV R    MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 7   HHHHSSGLVPR-GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 122 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAK 181
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAK
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 125

Query: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  241 bits (615), Expect = 1e-78
 Identities = 149/167 (89%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197
               +  LV R    MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 7   HHHHSSGLVPR-GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 198 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAK 257
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAK
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 125

Query: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  241 bits (615), Expect = 1e-78
 Identities = 149/167 (89%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 273
               +  LV R    MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 7   HHHHSSGLVPR-GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 274 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAK 333
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAK
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 125

Query: 334 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  241 bits (615), Expect = 1e-78
 Identities = 149/167 (89%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349
               +  LV R    MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 7   HHHHSSGLVPR-GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 350 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAK 409
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAK
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 125

Query: 410 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  239 bits (610), Expect = 7e-78
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  123 bits (309), Expect = 2e-33
 Identities = 76/92 (82%), Positives = 79/92 (85%), Gaps = 1/92 (1%)

Query: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425
               +  LV R    MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 7   HHHHSSGLVPR-GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 426 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG 
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  236 bits (604), Expect = 3e-77
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 134 DYNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 230
             L F GK LED   L +Y ++  ST+ + LRLRGG +
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGR 159

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  236 bits (604), Expect = 3e-77
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 209
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 210 DYNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
              +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 306
             L F GK LED   L +Y ++  ST+ + LRLRGG +
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGR 159

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  236 bits (604), Expect = 3e-77
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 285
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 286 DYNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
              +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 382
             L F GK LED   L +Y ++  ST+ + LRLRGG +
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGR 159

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  234 bits (599), Expect = 2e-76
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 3/157 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 58
             + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA 
Sbjct: 3   WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLAS 62

Query: 59  YNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117
             +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D  
Sbjct: 63  QGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF 122

Query: 118 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154
            L F GK LED   L +Y ++  ST+ + LRLRGG +
Sbjct: 123 WLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGR 159

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  233 bits (595), Expect = 8e-76
 Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 3/156 (1%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 361
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 362 DYNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
              +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 7e-77
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 7e-77
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 7e-77
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 7e-77
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 7e-77
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  121 bits (304), Expect = 6e-33
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRGGF 457
           IQKESTLHLVLRLRGG 
Sbjct: 61  IQKESTLHLVLRLRGGM 77

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  209 bits (533), Expect = 2e-66
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 13/167 (7%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 118 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG-MQIFV 157
            L F  K L D   G +L+D     +  E+       L+ G +Q F+
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFL 164

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  209 bits (533), Expect = 2e-66
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 13/167 (7%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 193
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 194 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG-MQIFV 233
            L F  K L D   G +L+D     +  E+       L+ G +Q F+
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFL 164

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  209 bits (533), Expect = 2e-66
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 13/167 (7%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 269
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 270 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG-MQIFV 309
            L F  K L D   G +L+D     +  E+       L+ G +Q F+
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFL 164

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  209 bits (533), Expect = 2e-66
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 13/167 (7%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 345
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 346 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG-MQIFV 385
            L F  K L D   G +L+D     +  E+       L+ G +Q F+
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFL 164

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  207 bits (529), Expect = 8e-66
 Identities = 91/162 (56%), Positives = 109/162 (67%), Gaps = 12/162 (7%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 421
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 422 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGGF 457
            L F  K L D   G +L+D     +  E+       L+ GF
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGF 159

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  208 bits (531), Expect = 8e-66
 Identities = 93/185 (50%), Positives = 103/185 (55%), Gaps = 12/185 (6%)

Query: 50  LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 109
           L+    L D  I K     L                GK+I       D   N + K+  K
Sbjct: 15  LQTYHKLPDNYITKSEAQALGWVA--SKGNLADVAPGKSIG-----GDIFSNREGKLPGK 67

Query: 110 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 169
            G    +  + +        R L   +      L        G QIFVKTLTGKTITLEV
Sbjct: 68  SGRTWREADINYTSGFRNSDRILYSSD-----WLIYKTTDHYGGQIFVKTLTGKTITLEV 122

Query: 170 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 229
           E SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG 
Sbjct: 123 EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182

Query: 230 QIFVK 234
           Q F K
Sbjct: 183 QTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  208 bits (531), Expect = 8e-66
 Identities = 93/185 (50%), Positives = 103/185 (55%), Gaps = 12/185 (6%)

Query: 126 LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 185
           L+    L D  I K     L                GK+I       D   N + K+  K
Sbjct: 15  LQTYHKLPDNYITKSEAQALGWVA--SKGNLADVAPGKSIG-----GDIFSNREGKLPGK 67

Query: 186 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 245
            G    +  + +        R L   +      L        G QIFVKTLTGKTITLEV
Sbjct: 68  SGRTWREADINYTSGFRNSDRILYSSD-----WLIYKTTDHYGGQIFVKTLTGKTITLEV 122

Query: 246 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305
           E SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG 
Sbjct: 123 EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182

Query: 306 QIFVK 310
           Q F K
Sbjct: 183 QTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  208 bits (531), Expect = 8e-66
 Identities = 93/185 (50%), Positives = 103/185 (55%), Gaps = 12/185 (6%)

Query: 202 LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 261
           L+    L D  I K     L                GK+I       D   N + K+  K
Sbjct: 15  LQTYHKLPDNYITKSEAQALGWVA--SKGNLADVAPGKSIG-----GDIFSNREGKLPGK 67

Query: 262 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 321
            G    +  + +        R L   +      L        G QIFVKTLTGKTITLEV
Sbjct: 68  SGRTWREADINYTSGFRNSDRILYSSD-----WLIYKTTDHYGGQIFVKTLTGKTITLEV 122

Query: 322 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 381
           E SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG 
Sbjct: 123 EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182

Query: 382 QIFVK 386
           Q F K
Sbjct: 183 QTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  200 bits (511), Expect = 7e-63
 Identities = 87/158 (55%), Positives = 96/158 (60%), Gaps = 10/158 (6%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
                    GK+I       D   N + K+  K G    +  + +        R L   +
Sbjct: 40  KGNLADVAPGKSIG-----GDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSD 94

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
                 L        G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 95  -----WLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 149

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 158
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG Q F K
Sbjct: 150 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  198 bits (504), Expect = 9e-62
 Identities = 90/179 (50%), Positives = 100/179 (55%), Gaps = 12/179 (6%)

Query: 278 LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 337
           L+    L D  I K     L                GK+I       D   N + K+  K
Sbjct: 15  LQTYHKLPDNYITKSEAQALGWVA--SKGNLADVAPGKSIG-----GDIFSNREGKLPGK 67

Query: 338 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 397
            G    +  + +        R L   +      L        G QIFVKTLTGKTITLEV
Sbjct: 68  SGRTWREADINYTSGFRNSDRILYSSD-----WLIYKTTDHYGGQIFVKTLTGKTITLEV 122

Query: 398 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           E SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  185 bits (470), Expect = 3e-55
 Identities = 86/208 (41%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 30  IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLVLRLRGG----MQIFVKTL 84
               +G    +  + F G  L +   L   + +++   L   L           +  K  
Sbjct: 100 FFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQK 159

Query: 85  TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTL 143
            G  +  ++  +    +V+     ++  P     ++      L     L+    +K   +
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 144 -----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
                     + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279

Query: 199 GKQLEDGRTLADYNIQKESTLHLVLRLR 226
           GKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 280 GKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  185 bits (470), Expect = 3e-55
 Identities = 86/208 (41%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLVLRLRGG----MQIFVKTL 160
               +G    +  + F G  L +   L   + +++   L   L           +  K  
Sbjct: 100 FFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQK 159

Query: 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTL 219
            G  +  ++  +    +V+     ++  P     ++      L     L+    +K   +
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 220 -----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
                     + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279

Query: 275 GKQLEDGRTLADYNIQKESTLHLVLRLR 302
           GKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 280 GKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  185 bits (470), Expect = 3e-55
 Identities = 86/208 (41%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLVLRLRGG----MQIFVKTL 236
               +G    +  + F G  L +   L   + +++   L   L           +  K  
Sbjct: 100 FFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQK 159

Query: 237 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTL 295
            G  +  ++  +    +V+     ++  P     ++      L     L+    +K   +
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 296 -----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350
                     + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279

Query: 351 GKQLEDGRTLADYNIQKESTLHLVLRLR 378
           GKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 280 GKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  185 bits (470), Expect = 3e-55
 Identities = 86/208 (41%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 258 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLVLRLRGG----MQIFVKTL 312
               +G    +  + F G  L +   L   + +++   L   L           +  K  
Sbjct: 100 FFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQK 159

Query: 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTL 371
            G  +  ++  +    +V+     ++  P     ++      L     L+    +K   +
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 372 -----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426
                     + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279

Query: 427 GKQLEDGRTLADYNIQKESTLHLVLRLR 454
           GKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 280 GKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  149 bits (377), Expect = 1e-41
 Identities = 79/156 (50%), Positives = 96/156 (61%), Gaps = 6/156 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY 59
             +  K   G  +  ++  +    +V+     ++  P     ++      L     L+  
Sbjct: 152 YIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKD 211

Query: 60  NIQKESTL-----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
             +K   +          + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 212 PNEKRDHMVLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 271

Query: 115 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150
           DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 272 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 3e-52
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 48  KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 106
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 107 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 3e-52
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 124 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 182
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 183 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 3e-52
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 200 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 258
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 259 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 3e-52
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 276 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 334
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 335 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 3e-52
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 352 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 410
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 411 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  139 bits (352), Expect = 2e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 86

Query: 60 NIQKESTLHLVLR 72
          +IQ   ++HLV  
Sbjct: 87 HIQDGHSVHLVKS 99

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  168 bits (428), Expect = 2e-51
 Identities = 76/106 (71%), Positives = 83/106 (78%), Gaps = 3/106 (2%)

Query: 71  LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 130
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 131 TLADYNIQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 173
           TL+DYNIQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  168 bits (428), Expect = 2e-51
 Identities = 76/106 (71%), Positives = 83/106 (78%), Gaps = 3/106 (2%)

Query: 147 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 206
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 207 TLADYNIQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 249
           TL+DYNIQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  168 bits (428), Expect = 2e-51
 Identities = 76/106 (71%), Positives = 83/106 (78%), Gaps = 3/106 (2%)

Query: 223 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 282
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 283 TLADYNIQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 325
           TL+DYNIQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  168 bits (428), Expect = 2e-51
 Identities = 76/106 (71%), Positives = 83/106 (78%), Gaps = 3/106 (2%)

Query: 299 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 358
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 359 TLADYNIQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 401
           TL+DYNIQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  163 bits (414), Expect = 2e-49
 Identities = 75/100 (75%), Positives = 82/100 (82%), Gaps = 3/100 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+DYN
Sbjct: 10  FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYN 69

Query: 61  IQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 97
           IQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 70  IQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  154 bits (392), Expect = 3e-46
 Identities = 71/82 (86%), Positives = 75/82 (91%)

Query: 375 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 434
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 435 TLADYNIQKESTLHLVLRLRGG 456
           TL+DYNIQ+ESTLHLVLRLRGG
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGG 85

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 4e-50
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1  MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 61 IQKESTLHLVLRLRGGMQ 78
            +      V    G   
Sbjct: 61 YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 4e-50
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 137 IQKESTLHLVLRLRGGMQ 154
             +      V    G   
Sbjct: 61  YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 4e-50
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 213 IQKESTLHLVLRLRGGMQ 230
             +      V    G   
Sbjct: 61  YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 4e-50
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 289 IQKESTLHLVLRLRGGMQ 306
             +      V    G   
Sbjct: 61  YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 4e-50
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 365 IQKESTLHLVLRLRGGMQ 382
             +      V    G   
Sbjct: 61  YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  164 bits (417), Expect = 2e-49
 Identities = 5/76 (6%), Positives = 19/76 (25%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 441 IQKESTLHLVLRLRGG 456
             +      V    G 
Sbjct: 61  YVQVRQPIFVAHTAGR 76

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  162 bits (413), Expect = 1e-49
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGK 87
          I   S LHLVL LRGG  +  K     
Sbjct: 61 ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  162 bits (413), Expect = 1e-49
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGK 163
           I   S LHLVL LRGG  +  K     
Sbjct: 61  ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  162 bits (413), Expect = 1e-49
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGK 239
           I   S LHLVL LRGG  +  K     
Sbjct: 61  ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  162 bits (413), Expect = 1e-49
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGK 315
           I   S LHLVL LRGG  +  K     
Sbjct: 61  ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  162 bits (413), Expect = 1e-49
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGK 391
           I   S LHLVL LRGG  +  K     
Sbjct: 61  ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  157 bits (398), Expect = 3e-47
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 9e-49
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 94
          IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61 IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 9e-49
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 170
           IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61  IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 9e-49
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 246
           IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61  IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 9e-49
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 322
           IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61  IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 9e-49
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 398
           IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61  IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  149 bits (377), Expect = 4e-44
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 2e-48
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 68  HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 127
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 128 DGRTLADYNIQKESTLHLVLRLRGG 152
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 2e-48
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 144 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 203
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 204 DGRTLADYNIQKESTLHLVLRLRGG 228
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 2e-48
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 220 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 279
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 280 DGRTLADYNIQKESTLHLVLRLRGG 304
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 2e-48
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 296 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 355
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 356 DGRTLADYNIQKESTLHLVLRLRGG 380
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 2e-48
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 372 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 431
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 432 DGRTLADYNIQKESTLHLVLRLRGG 456
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  152 bits (385), Expect = 2e-45
 Identities = 66/76 (86%), Positives = 74/76 (97%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 69

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 70 IQKESTLHLVLRLRGG 85

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 289 IQKESTLHLVLRLRGG 304
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 365 IQKESTLHLVLRLRGG 380
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (402), Expect = 4e-48
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 441 IQKESTLHLVLRLRGG 456
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 4e-47
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 43  LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 102
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 103 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 4e-47
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 119 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 178
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 4e-47
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 254
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 255 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 4e-47
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 271 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 330
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 331 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 4e-47
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 347 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 406
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 407 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  149 bits (377), Expect = 4e-44
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 8e-47
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 61 IQKESTLHLVLRLRGGMQIFVK 82
          ++  ST+ + LRLRGG++    
Sbjct: 65 LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 8e-47
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 137 IQKESTLHLVLRLRGGMQIFVK 158
           ++  ST+ + LRLRGG++    
Sbjct: 65  LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 8e-47
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 213 IQKESTLHLVLRLRGGMQIFVK 234
           ++  ST+ + LRLRGG++    
Sbjct: 65  LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 8e-47
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 289 IQKESTLHLVLRLRGGMQIFVK 310
           ++  ST+ + LRLRGG++    
Sbjct: 65  LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 8e-47
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 365 IQKESTLHLVLRLRGGMQIFVK 386
           ++  ST+ + LRLRGG++    
Sbjct: 65  LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  147 bits (374), Expect = 8e-44
 Identities = 28/77 (36%), Positives = 44/77 (57%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 441 IQKESTLHLVLRLRGGF 457
           ++  ST+ + LRLRGG 
Sbjct: 65  LKPLSTVFMNLRLRGGL 81

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  154 bits (392), Expect = 2e-46
 Identities = 73/80 (91%), Positives = 76/80 (95%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 136 NIQKESTLHLVLRLRGGMQI 155
           NIQKESTLHLVLRLRG   +
Sbjct: 61  NIQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  154 bits (392), Expect = 2e-46
 Identities = 73/80 (91%), Positives = 76/80 (95%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 212 NIQKESTLHLVLRLRGGMQI 231
           NIQKESTLHLVLRLRG   +
Sbjct: 61  NIQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  154 bits (392), Expect = 2e-46
 Identities = 73/80 (91%), Positives = 76/80 (95%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 288 NIQKESTLHLVLRLRGGMQI 307
           NIQKESTLHLVLRLRG   +
Sbjct: 61  NIQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  154 bits (392), Expect = 2e-46
 Identities = 73/80 (91%), Positives = 76/80 (95%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 364 NIQKESTLHLVLRLRGGMQI 383
           NIQKESTLHLVLRLRG   +
Sbjct: 61  NIQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  152 bits (386), Expect = 1e-45
 Identities = 72/79 (91%), Positives = 75/79 (94%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 2  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61

Query: 61 IQKESTLHLVLRLRGGMQI 79
          IQKESTLHLVLRLRG   +
Sbjct: 62 IQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  152 bits (386), Expect = 2e-45
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 440 NIQKESTLHLVLRLRGG 456
           NIQKESTLHLVLRLRG 
Sbjct: 61  NIQKESTLHLVLRLRGY 77

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 3e-46
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 134 DYNIQKESTLHLVLRLRGG 152
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 3e-46
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 210 DYNIQKESTLHLVLRLRGG 228
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 3e-46
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 286 DYNIQKESTLHLVLRLRGG 304
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 3e-46
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 362 DYNIQKESTLHLVLRLRGG 380
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 3e-46
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 438 DYNIQKESTLHLVLRLRGG 456
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  152 bits (385), Expect = 2e-45
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 72

Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVLRLRGG
Sbjct: 73 ILGGSVLHLVLRLRGG 88

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  152 bits (387), Expect = 7e-46
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  152 bits (387), Expect = 7e-46
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  152 bits (387), Expect = 7e-46
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 287 YNIQKESTLHLVLRLRGG 304
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  152 bits (387), Expect = 7e-46
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 363 YNIQKESTLHLVLRLRGG 380
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  152 bits (387), Expect = 7e-46
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 439 YNIQKESTLHLVLRLRGG 456
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  152 bits (387), Expect = 7e-46
 Identities = 70/76 (92%), Positives = 73/76 (96%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 61 IQKESTLHLVLRLRGG 76
          IQK STL L+LRLRGG
Sbjct: 64 IQKWSTLFLLLRLRGG 79

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 7e-46
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 61  IQKESTLHLVLRLRGGMQIFVK 82
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 7e-46
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 137 IQKESTLHLVLRLRGGMQIFVK 158
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 7e-46
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 213 IQKESTLHLVLRLRGGMQIFVK 234
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 7e-46
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 289 IQKESTLHLVLRLRGGMQIFVK 310
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 7e-46
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 365 IQKESTLHLVLRLRGGMQIFVK 386
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  151 bits (384), Expect = 4e-45
 Identities = 21/76 (27%), Positives = 40/76 (52%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 441 IQKESTLHLVLRLRGG 456
           I K+  + +++     
Sbjct: 84  IPKDYVVQVIVSQPVQ 99

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 61 IQKESTLHLVLRLRGG 76
          I   S L+L+L+LRGG
Sbjct: 64 IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 137 IQKESTLHLVLRLRGG 152
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 213 IQKESTLHLVLRLRGG 228
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 289 IQKESTLHLVLRLRGG 304
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 365 IQKESTLHLVLRLRGG 380
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 1e-45
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 441 IQKESTLHLVLRLRGG 456
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGG 304
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGG 380
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  151 bits (384), Expect = 2e-45
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRGG 456
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (384), Expect = 3e-45
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 135 YNIQKESTLHLVLRLRGGMQIFVKTLTG 162
           YN+  +  +HLV R      +     +G
Sbjct: 64  YNVGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (384), Expect = 3e-45
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 211 YNIQKESTLHLVLRLRGGMQIFVKTLTG 238
           YN+  +  +HLV R      +     +G
Sbjct: 64  YNVGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (384), Expect = 3e-45
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 287 YNIQKESTLHLVLRLRGGMQIFVKTLTG 314
           YN+  +  +HLV R      +     +G
Sbjct: 64  YNVGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (384), Expect = 3e-45
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 363 YNIQKESTLHLVLRLRGGMQIFVKTLTG 390
           YN+  +  +HLV R      +     +G
Sbjct: 64  YNVGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  150 bits (382), Expect = 5e-45
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTG 86
          +  +  +HLV R      +     +G
Sbjct: 66 VGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  147 bits (373), Expect = 1e-43
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 439 YNIQKESTLHLVLRLRGG 456
           YN+  +  +HLV R    
Sbjct: 64  YNVGGK-VIHLVERAPPQ 80

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (380), Expect = 8e-45
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 135 YNIQKESTLHLVLRLRGG 152
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (380), Expect = 8e-45
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 211 YNIQKESTLHLVLRLRGG 228
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (380), Expect = 8e-45
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 287 YNIQKESTLHLVLRLRGG 304
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (380), Expect = 8e-45
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 363 YNIQKESTLHLVLRLRGG 380
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (380), Expect = 8e-45
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 439 YNIQKESTLHLVLRLRGG 456
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  149 bits (377), Expect = 2e-44
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y 
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 61 IQKESTLHLVLRLRGG 76
          IQ   TL L  +   G
Sbjct: 68 IQDSDTLILSKKKGSG 83

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 61 IQKESTLHLVLRLRG 75
          ++++S +H+V R R 
Sbjct: 61 LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 137 IQKESTLHLVLRLRG 151
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 213 IQKESTLHLVLRLRG 227
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 289 IQKESTLHLVLRLRG 303
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 365 IQKESTLHLVLRLRG 379
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  148 bits (377), Expect = 2e-44
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 441 IQKESTLHLVLRLRG 455
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 1e-43
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLR 148
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 1e-43
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLR 224
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 1e-43
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 273 FAGKQLEDGRTLADYNIQKESTLHLVLR 300
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 1e-43
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 349 FAGKQLEDGRTLADYNIQKESTLHLVLR 376
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 1e-43
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 425 FAGKQLEDGRTLADYNIQKESTLHLVLR 452
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  143 bits (364), Expect = 2e-42
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 77

Query: 61 IQKESTLHLVLR 72
          +  +  +HLV R
Sbjct: 78 VGGK-VIHLVER 88

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 2e-43
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 65  STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 125 QLEDGRTLADYNIQKESTLHLVLRLRGG 152
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 2e-43
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 141 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 200
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 201 QLEDGRTLADYNIQKESTLHLVLRLRGG 228
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 2e-43
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 217 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 276
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 277 QLEDGRTLADYNIQKESTLHLVLRLRGG 304
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 2e-43
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 293 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 352
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 353 QLEDGRTLADYNIQKESTLHLVLRLRGG 380
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 2e-43
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 369 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 429 QLEDGRTLADYNIQKESTLHLVLRLRGG 456
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL    
Sbjct: 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 77

Query: 61 IQKESTLHLVLRLRGG 76
          ++  +TL +  R+ GG
Sbjct: 78 VEALTTLEVAGRMLGG 93

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 5e-43
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 134 DYNIQKESTLHLVLRL 149
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 5e-43
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 210 DYNIQKESTLHLVLRL 225
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 5e-43
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 286 DYNIQKESTLHLVLRL 301
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 5e-43
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 362 DYNIQKESTLHLVLRL 377
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 5e-43
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 438 DYNIQKESTLHLVLRL 453
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  143 bits (364), Expect = 2e-42
 Identities = 29/73 (39%), Positives = 46/73 (63%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY+
Sbjct: 8  MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 67

Query: 61 IQKESTLHLVLRL 73
          I   S L+LV++ 
Sbjct: 68 IGPNSKLNLVVKP 80

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 3e-42
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 76  GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 134 DYNIQKESTLHLVLRLRGG 152
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 3e-42
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 152 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 210 DYNIQKESTLHLVLRLRGG 228
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 3e-42
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 228 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 286 DYNIQKESTLHLVLRLRGG 304
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 3e-42
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 304 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 362 DYNIQKESTLHLVLRLRGG 380
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 3e-42
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 380 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 438 DYNIQKESTLHLVLRLRGG 456
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  142 bits (360), Expect = 7e-42
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 8  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 67

Query: 59 YNIQKESTLHLVLRLRGG 76
          Y++     + L++R   G
Sbjct: 68 YDVGLNDIIQLLVRPDSG 85

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 133 ADYNIQKESTLHLVLRLRG 151
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 209 ADYNIQKESTLHLVLRLRG 227
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 285 ADYNIQKESTLHLVLRLRG 303
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 361 ADYNIQKESTLHLVLRLRG 379
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 1e-41
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 437 ADYNIQKESTLHLVLRLRG 455
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  141 bits (358), Expect = 1e-41
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 61 IQKESTLHLVLRLRG 75
          ++  ST+ + LRLRG
Sbjct: 65 LKPLSTVFMNLRLRG 79

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 2e-41
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1  MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKT 88
               T +L L+L GG +   K      
Sbjct: 60 ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 2e-41
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKT 164
                T +L L+L GG +   K      
Sbjct: 60  ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 2e-41
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKT 240
                T +L L+L GG +   K      
Sbjct: 60  ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 2e-41
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKT 316
                T +L L+L GG +   K      
Sbjct: 60  ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 2e-41
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKT 392
                T +L L+L GG +   K      
Sbjct: 60  ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  141 bits (357), Expect = 3e-40
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 441 IQKESTLHLVLRLRGG 456
                T +L L+L GG
Sbjct: 60  ----VTYYLSLKLLGG 71

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 58 DYNIQKESTLHLVLRLRGG 76
          +Y I +++ + +++     
Sbjct: 61 EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 134 DYNIQKESTLHLVLRLRGG 152
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 210 DYNIQKESTLHLVLRLRGG 228
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 285
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 286 DYNIQKESTLHLVLRLRGG 304
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 361
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 362 DYNIQKESTLHLVLRLRGG 380
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 6e-41
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 437
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 438 DYNIQKESTLHLVLRLRGG 456
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 8e-41
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKT 88
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 8e-41
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKT 164
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 8e-41
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKT 240
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 8e-41
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKT 316
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 8e-41
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKT 392
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  138 bits (349), Expect = 6e-40
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 441 IQKESTLHLVLRLRGG 456
           ++   T+HLV++ +  
Sbjct: 77  VRDGLTVHLVIKRQHR 92

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3  MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 60 NIQKESTLHLVLR 72
          +IQ   ++HLV  
Sbjct: 63 HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 77  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 136 NIQKESTLHLVLR 148
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 212 NIQKESTLHLVLR 224
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 288 NIQKESTLHLVLR 300
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 364 NIQKESTLHLVLR 376
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 440 NIQKESTLHLVLR 452
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 59
          M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 60 NIQKESTLHLVL 71
           I   S + L +
Sbjct: 71 QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 135
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 136 NIQKESTLHLVL 147
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 211
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 212 NIQKESTLHLVL 223
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 287
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 288 NIQKESTLHLVL 299
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 363
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 364 NIQKESTLHLVL 375
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 1e-40
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 439
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 440 NIQKESTLHLVL 451
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (353), Expect = 2e-40
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 57  ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 116
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 117 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (353), Expect = 2e-40
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 133 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (353), Expect = 2e-40
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 209 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (353), Expect = 2e-40
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (353), Expect = 2e-40
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (351), Expect = 3e-40
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 2   QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
                 L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+
Sbjct: 37  DKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNM 96

Query: 62  QKESTLHLVLRLRGG 76
              + +HL L+ R G
Sbjct: 97  ASGAVIHLALKERSG 111

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 1e-39
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 75  GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 133 ADYNIQKESTLHLVLRL 149
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 1e-39
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 151 GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 209 ADYNIQKESTLHLVLRL 225
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 1e-39
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 227 GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 285 ADYNIQKESTLHLVLRL 301
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 1e-39
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 303 GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 361 ADYNIQKESTLHLVLRL 377
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 1e-39
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 379 GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 436
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 437 ADYNIQKESTLHLVLRL 453
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  133 bits (336), Expect = 2e-38
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 1  MQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 3  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 62

Query: 59 YNIQKESTLHLVLRL 73
          Y ++   T+ L++R 
Sbjct: 63 YEVRLNDTIQLLVRQ 77

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  137 bits (347), Expect = 1e-39
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 121 FAGKQLEDGRTL 132
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  137 bits (347), Expect = 1e-39
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 197 FAGKQLEDGRTL 208
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  137 bits (347), Expect = 1e-39
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 273 FAGKQLEDGRTL 284
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  137 bits (347), Expect = 1e-39
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 349 FAGKQLEDGRTL 360
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  137 bits (347), Expect = 1e-39
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 425 FAGKQLEDGRTL 436
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  132 bits (334), Expect = 1e-37
 Identities = 74/77 (96%), Positives = 76/77 (98%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRGGF 457
           IQKESTLHLVLRLRGG 
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (343), Expect = 3e-39
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 58  DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 116
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 117 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (343), Expect = 3e-39
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 134 DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (343), Expect = 3e-39
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 210 DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 269 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (343), Expect = 3e-39
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 286 DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 345 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (343), Expect = 3e-39
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 362 DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 421 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (341), Expect = 6e-39
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M++ VKT   K     V  + ++   K +I  +     DQ  LIFAGK L+D  TL+ + 
Sbjct: 26 MKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 84

Query: 61 IQKESTLHLVLR 72
          I    T+HLV++
Sbjct: 85 IHDGLTVHLVIK 96

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 61 IQKESTLHLVLRLR 74
          ++   T+HLV++ +
Sbjct: 82 VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 137 IQKESTLHLVLRLR 150
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 213 IQKESTLHLVLRLR 226
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 289 IQKESTLHLVLRLR 302
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 365 IQKESTLHLVLRLR 378
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (336), Expect = 3e-38
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 441 IQKESTLHLVLRLR 454
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 58 DYNIQKESTLHLVL-RLRGG 76
          DY I +++ + +++ + + G
Sbjct: 66 DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 134 DYNIQKESTLHLVL-RLRGG 152
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 210 DYNIQKESTLHLVL-RLRGG 228
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 285
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 286 DYNIQKESTLHLVL-RLRGG 304
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 361
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 362 DYNIQKESTLHLVL-RLRGG 380
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 3e-38
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 437
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 438 DYNIQKESTLHLVL-RLRGG 456
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 61  IQKESTLHLVLRLRGG 76
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 137 IQKESTLHLVLRLRGG 152
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 213 IQKESTLHLVLRLRGG 228
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 289 IQKESTLHLVLRLRGG 304
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 365 IQKESTLHLVLRLRGG 380
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 1e-37
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 441 IQKESTLHLVLRLRGG 456
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18 IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 61 IQKESTLHLVLRLRGG 76
          I   ST+H+V+R   G
Sbjct: 77 ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 137 IQKESTLHLVLRLRGG 152
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 213 IQKESTLHLVLRLRGG 228
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 289 IQKESTLHLVLRLRGG 304
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 365 IQKESTLHLVLRLRGG 380
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  130 bits (330), Expect = 2e-37
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 441 IQKESTLHLVLRLRGG 456
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2  VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 61 IQKESTLHLVLR 72
          ++    +  ++ 
Sbjct: 62 LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 137 IQKESTLHLVLR 148
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 213 IQKESTLHLVLR 224
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 289 IQKESTLHLVLR 300
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 365 IQKESTLHLVLR 376
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 1e-36
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 441 IQKESTLHLVLR 452
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  121 bits (306), Expect = 5e-34
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 63  KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 123 GKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQ 154
           G +L +D R L +Y I + S + + L+     +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  121 bits (306), Expect = 5e-34
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 199 GKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQ 230
           G +L +D R L +Y I + S + + L+     +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  121 bits (306), Expect = 5e-34
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 275 GKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQ 306
           G +L +D R L +Y I + S + + L+     +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  121 bits (306), Expect = 5e-34
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 351 GKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQ 382
           G +L +D R L +Y I + S + + L+     +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  121 bits (306), Expect = 7e-34
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 367 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 427 GKQL-EDGRTLADYNIQKESTLHLVLR 452
           G +L +D R L +Y I + S + + L+
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLK 87

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  119 bits (300), Expect = 4e-33
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++G +L +D R L +Y
Sbjct: 16 IHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY 74

Query: 60 NIQKESTLHLVLRLRGGMQ 78
           I + S + + L+     +
Sbjct: 75 GITEFSEIVVFLKSINRAK 93

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 4e-33
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 1   MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 59  YNIQKESTLHLVLRLRGGMQ 78
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 4e-33
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 77  MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 135 YNIQKESTLHLVLRLRGGMQ 154
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 4e-33
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 153 MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 211 YNIQKESTLHLVLRLRGGMQ 230
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 4e-33
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 229 MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 287 YNIQKESTLHLVLRLRGGMQ 306
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 4e-33
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 305 MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 363 YNIQKESTLHLVLRLRGGMQ 382
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  119 bits (301), Expect = 5e-33
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 381 MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 439 YNIQKESTLHLVLRLRGG 456
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  114 bits (286), Expect = 2e-28
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 131
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 132 LADYNIQKESTLHLVLRLRGGMQ 154
           + DY I +++ + +++      Q
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAGQ 88

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  114 bits (286), Expect = 2e-28
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 207
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 208 LADYNIQKESTLHLVLRLRGGMQ 230
           + DY I +++ + +++      Q
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAGQ 88

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  114 bits (286), Expect = 2e-28
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 283
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 284 LADYNIQKESTLHLVLRLRGGMQ 306
           + DY I +++ + +++      Q
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAGQ 88

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  114 bits (286), Expect = 2e-28
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 359
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 360 LADYNIQKESTLHLVLRLRGGMQ 382
           + DY I +++ + +++      Q
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAGQ 88

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  114 bits (286), Expect = 2e-28
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 435
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 436 LADYNIQKESTLHLVLRLRGG 456
           + DY I +++ + +++     
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKA 86

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  113 bits (284), Expect = 4e-28
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 8  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 67

Query: 58 DYNIQKESTLHLVLRLRGGMQ 78
          DY I +++ + +++      Q
Sbjct: 68 DYRIDEKNFVVVMVTKTKAGQ 88

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13 IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 61 IQKESTLHLV 70
          +   + L L+
Sbjct: 72 VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 137 IQKESTLHLV 146
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 213 IQKESTLHLV 222
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 289 IQKESTLHLV 298
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 365 IQKESTLHLV 374
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (261), Expect = 1e-27
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 441 IQKESTLHLV 450
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 92.4 bits (229), Expect = 5e-23
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 76  GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 130
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 131 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 162
           +L  Y ++    + L+ +   G++   +T +G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 92.4 bits (229), Expect = 5e-23
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 152 GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 206
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 207 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 238
           +L  Y ++    + L+ +   G++   +T +G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 92.4 bits (229), Expect = 5e-23
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 228 GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 282
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 283 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 314
           +L  Y ++    + L+ +   G++   +T +G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 92.4 bits (229), Expect = 5e-23
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 304 GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 358
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 359 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 390
           +L  Y ++    + L+ +   G++   +T +G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 90.4 bits (224), Expect = 3e-22
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 1  MQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 55
          M I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  +
Sbjct: 8  MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86
          L  Y ++    + L+ +   G++   +T +G
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 90.0 bits (223), Expect = 3e-22
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 380 GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 434
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 435 TLADYNIQKESTLHLVLRLRGG 456
           +L  Y ++    + L+ +   G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVG 88

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 8e-20
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 132
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 133 ADYNIQKESTLHLVL 147
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 8e-20
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 208
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 209 ADYNIQKESTLHLVL 223
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 8e-20
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 284
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 285 ADYNIQKESTLHLVL 299
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 8e-20
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 360
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 361 ADYNIQKESTLHLVL 375
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 8e-20
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 436
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 437 ADYNIQKESTLHLVL 451
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 80.9 bits (199), Expect = 5e-19
 Identities = 13/72 (18%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADY 59
          M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L   
Sbjct: 9  MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSL 68

Query: 60 NIQKESTLHLVL 71
          ++ K ++L+++ 
Sbjct: 69 HLPKNNSLYVLT 80

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27 VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 61 IQKE-STLHLVL 71
          +++   + +L L
Sbjct: 87 VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 137 IQKE-STLHLVL 147
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 213 IQKE-STLHLVL 223
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 289 IQKE-STLHLVL 299
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 365 IQKE-STLHLVL 375
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 441 IQKE-STLHLVL 451
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 70.8 bits (173), Expect = 4e-15
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 440 NI-------QKESTLHLVLRLRGGF 457
                    Q  +T+ L  R    F
Sbjct: 61  GFTSQTARPQAPATVGLAFRADDTF 85

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1  MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 60 NI-------QKESTLHLVLRLRGGMQ 78
                   Q  +T+ L  R     +
Sbjct: 61 GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 77  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 136 NI-------QKESTLHLVLRLRGGMQ 154
                    Q  +T+ L  R     +
Sbjct: 61  GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 212 NI-------QKESTLHLVLRLRGGMQ 230
                    Q  +T+ L  R     +
Sbjct: 61  GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 288 NI-------QKESTLHLVLRLRGGMQ 306
                    Q  +T+ L  R     +
Sbjct: 61  GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 364 NI-------QKESTLHLVLRLRGGMQ 382
                    Q  +T+ L  R     +
Sbjct: 61  GFTSQTARPQAPATVGLAFRADDTFE 86

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 75  GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 130
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 131 TLADYNIQKES--TLHLVLRLRGG 152
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 151 GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 206
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 207 TLADYNIQKES--TLHLVLRLRGG 228
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 227 GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 282
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 283 TLADYNIQKES--TLHLVLRLRGG 304
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 303 GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 358
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 359 TLADYNIQKES--TLHLVLRLRGG 380
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 379 GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 434
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 435 TLADYNIQKES--TLHLVLRLRGG 456
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 1  MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 56
          + + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D + L
Sbjct: 8  VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67

Query: 57 ADYNIQKES--TLHLVLRLRGG 76
           D   ++E    LHLV  ++ G
Sbjct: 68 RDLLPKQEKRHVLHLVCNVKSG 89

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 61 IQKESTLHLV 70
          +   + + +V
Sbjct: 76 VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 137 IQKESTLHLV 146
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 213 IQKESTLHLV 222
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 289 IQKESTLHLV 298
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 365 IQKESTLHLV 374
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 441 IQKESTLHLV 450
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 52
          + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 53 GRTLADYNIQKEST--LHLVLR 72
            TL    +    T  +HLV R
Sbjct: 78 NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 129 GRTLADYNIQKEST--LHLVLR 148
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 205 GRTLADYNIQKEST--LHLVLR 224
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 280
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 281 GRTLADYNIQKEST--LHLVLR 300
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 356
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 357 GRTLADYNIQKEST--LHLVLR 376
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 6e-13
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 432
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 433 GRTLADYNIQKEST--LHLVLR 452
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 61 IQKESTLHL 69
          +  ++ L L
Sbjct: 82 VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 137 IQKESTLHL 145
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 213 IQKESTLHL 221
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 289 IQKESTLHL 297
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 365 IQKESTLHL 373
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 441 IQKESTLHL 449
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8  YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 61 IQKESTLHLV 70
          ++   T+ ++
Sbjct: 67 MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 137 IQKESTLHLV 146
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 213 IQKESTLHLV 222
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 289 IQKESTLHLV 298
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 365 IQKESTLHLV 374
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 441 IQKESTLHLV 450
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 75  GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 122
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 123 GKQLEDGRTLADYNIQKESTLHLV 146
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 151 GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 198
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 199 GKQLEDGRTLADYNIQKESTLHLV 222
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 227 GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 274
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 275 GKQLEDGRTLADYNIQKESTLHLV 298
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 303 GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 350
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 351 GKQLEDGRTLADYNIQKESTLHLV 374
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 379 GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 426
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 427 GKQLEDGRTLADYNIQKESTLHLV 450
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 60.3 bits (146), Expect = 2e-11
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 1  MQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGK 48
          M        T       +E    +  +++++K K++   G   D  R+          G+
Sbjct: 3  MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGE 62

Query: 49 QLEDGRTLADYNIQKESTLHLV 70
            +  ++L D  ++    +H V
Sbjct: 63 LTDGAKSLKDLGVRDGYRIHAV 84

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 52
          + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 53 GRTLADYNIQ--KESTLHLVLR 72
            TL    +   K + +HLV R
Sbjct: 77 NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 129 GRTLADYNIQ--KESTLHLVLR 148
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 205 GRTLADYNIQ--KESTLHLVLR 224
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 280
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 281 GRTLADYNIQ--KESTLHLVLR 300
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 356
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 357 GRTLADYNIQ--KESTLHLVLR 376
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 4e-12
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 432
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 433 GRTLADYNIQ--KESTLHLVLR 452
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 1  MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 49
          +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17 VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 50 LEDGRTLADYNIQKESTLHLVLR 72
          L+D +TL  Y IQ  ST+H++ +
Sbjct: 77 LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 77  MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 125
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 126 LEDGRTLADYNIQKESTLHLVLR 148
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 153 MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 201
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 202 LEDGRTLADYNIQKESTLHLVLR 224
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 229 MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 277
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 278 LEDGRTLADYNIQKESTLHLVLR 300
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 305 MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 353
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 354 LEDGRTLADYNIQKESTLHLVLR 376
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 381 MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 429
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 430 LEDGRTLADYNIQKESTLHLVLR 452
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 61 IQKESTLHL 69
          I     L L
Sbjct: 89 IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 137 IQKESTLHL 145
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 213 IQKESTLHL 221
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 289 IQKESTLHL 297
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 365 IQKESTLHL 373
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 441 IQKESTLHL 449
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 133
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 134 DYNIQKESTLHLVLR 148
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 209
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 210 DYNIQKESTLHLVLR 224
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 285
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 286 DYNIQKESTLHLVLR 300
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 361
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 362 DYNIQKESTLHLVLR 376
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 8e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 437
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 438 DYNIQKESTLHLVLR 452
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+  
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL 64

Query: 60 NIQKESTLHLVLR 72
          NI     +H    
Sbjct: 65 NITNNCVIHCHRS 77

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 1  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 56
          + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 57 AD--YNIQKESTLHLV 70
           D      +   +HLV
Sbjct: 84 KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 77  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 132
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 133 AD--YNIQKESTLHLV 146
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 153 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 208
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 209 AD--YNIQKESTLHLV 222
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 229 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 284
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 285 AD--YNIQKESTLHLV 298
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 305 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 360
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 361 AD--YNIQKESTLHLV 374
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 381 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 436
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 437 AD--YNIQKESTLHLV 450
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 1  MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 56
          + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8  LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 57 ADYNIQKESTLHLV 70
              ++  + + ++
Sbjct: 67 GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 77  MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 132
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 133 ADYNIQKESTLHLV 146
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 153 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 208
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 209 ADYNIQKESTLHLV 222
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 229 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 284
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 285 ADYNIQKESTLHLV 298
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 305 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 360
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 361 ADYNIQKESTLHLV 374
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 436
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 437 ADYNIQKESTLHLV 450
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 45
          M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8  MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 46 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 75
          AG++L ED + L DY I+    +  + +L  
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 121
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 122 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 151
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 197
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 198 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 227
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 273
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 274 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 303
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 349
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 350 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 379
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 425
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 426 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 455
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 12/77 (15%), Positives = 33/77 (42%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 441 IQKESTLHLVLRLRGGF 457
           ++ +  +  ++   GG 
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 61  IQKESTLHLVLRLRGGM 77
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 137 IQKESTLHLVLRLRGGM 153
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 213 IQKESTLHLVLRLRGGM 229
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 289 IQKESTLHLVLRLRGGM 305
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 365 IQKESTLHLVLRLRGGM 381
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 56
          ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2  RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 57 ADYNIQKESTL 67
           D  IQ    L
Sbjct: 62 GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 132
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 133 ADYNIQKESTL 143
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 208
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 209 ADYNIQKESTL 219
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 284
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 285 ADYNIQKESTL 295
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 360
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 361 ADYNIQKESTL 371
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 436
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 437 ADYNIQKESTL 447
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 58
            L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22 ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 59 YNIQKESTLHLV 70
          ++      LH++
Sbjct: 82 FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 134
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 135 YNIQKESTLHLV 146
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 210
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 211 YNIQKESTLHLV 222
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 234 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 286
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 287 YNIQKESTLHLV 298
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 362
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 363 YNIQKESTLHLV 374
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 438
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 439 YNIQKESTLHLV 450
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 64  ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 116
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 117 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 148
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 140 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 192
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 193 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 224
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 216 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 268
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 269 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 300
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 292 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 344
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 345 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 376
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 368 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 420
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 421 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 452
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 13/67 (19%)

Query: 19  SSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQ------KES 65
            + T+  +K  +     ++KE  P    + +LI AGK LE+ +T+ DY           +
Sbjct: 36  DATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVT 95

Query: 66  TLHLVLR 72
           T+H++++
Sbjct: 96  TMHVIIQ 102

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 13/77 (16%), Positives = 33/77 (42%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 441 IQKESTLHLVLRLRGGF 457
           ++ E T+ +  +  GG 
Sbjct: 66  MEDEDTIDVFQQQTGGV 82

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6  INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 61 IQKESTLHLVLRLRGGMQI 79
          ++ E T+ +  +  GG+ +
Sbjct: 66 MEDEDTIDVFQQQTGGVYL 84

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 137 IQKESTLHLVLRLRGGMQI 155
           ++ E T+ +  +  GG+ +
Sbjct: 66  MEDEDTIDVFQQQTGGVYL 84

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 213 IQKESTLHLVLRLRGGMQI 231
           ++ E T+ +  +  GG+ +
Sbjct: 66  MEDEDTIDVFQQQTGGVYL 84

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 289 IQKESTLHLVLRLRGGMQI 307
           ++ E T+ +  +  GG+ +
Sbjct: 66  MEDEDTIDVFQQQTGGVYL 84

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 365 IQKESTLHLVLRLRGGMQI 383
           ++ E T+ +  +  GG+ +
Sbjct: 66  MEDEDTIDVFQQQTGGVYL 84

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 66
          GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14 GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 67 L 67
          L
Sbjct: 74 L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 142
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 143 L 143
           L
Sbjct: 74  L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 218
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 219 L 219
           L
Sbjct: 74  L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 294
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 295 L 295
           L
Sbjct: 74  L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 370
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 371 L 371
           L
Sbjct: 74  L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 446
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 447 L 447
           L
Sbjct: 74  L 74

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 75  GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 128
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 129 GRTLADYNIQKESTLHLV 146
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 151 GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 204
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 205 GRTLADYNIQKESTLHLV 222
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 227 GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 280
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 281 GRTLADYNIQKESTLHLV 298
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 303 GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 356
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 357 GRTLADYNIQKESTLHLV 374
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 379 GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 432
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 433 GRTLADYNIQKESTLHLV 450
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLV 70
          S   + ++   +++  G+P   Q+LIF GK L E    L+   IQ    + L+
Sbjct: 30 SEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 61 IQKESTLHLVLRLRGG 76
          +++E  + +     GG
Sbjct: 82 MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 137 IQKESTLHLVLRLRGG 152
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 213 IQKESTLHLVLRLRGG 228
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 289 IQKESTLHLVLRLRGG 304
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 365 IQKESTLHLVLRLRGG 380
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 441 IQKESTLHLVLRLRGG 456
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 20 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 70
          S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28 SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 96  SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 146
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 172 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 222
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 248 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 298
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 324 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 374
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 400 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 450
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	457
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.81
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.8
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.8
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.79
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.78
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.78
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.78
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.77
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.77
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.77
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.77
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.77
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.77
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.76
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.76
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.76
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.76
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.75
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.75
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.75
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.75
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.75
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.74
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.74
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.74
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.74
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.74
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.73
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.73
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.73
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.73
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.72
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.72
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.72
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.72
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.72
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.72
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.71
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.71
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.71
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.71
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.71
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.7
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.7
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.7
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.7
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.7
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.53
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.69
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.69
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.69
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.69
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.69
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.69
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.69
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.68
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.68
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.68
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.68
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.68
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.68
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.68
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.67
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.67
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.67
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.67
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.67
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.67
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.67
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.67
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.66
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.66
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.66
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.66
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.66
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.66
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.66
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.66
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.66
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.66
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.47
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.65
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.65
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.65
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.65
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.65
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.64
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.64
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.64
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.64
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.64
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.64
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.64
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.64
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.64
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.63
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.63
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.63
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.63
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.63
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.63
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.63
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.62
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.61
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.61
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.6
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.6
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.59
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.59
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.59
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.58
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.58
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.58
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.58
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.56
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.56
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.56
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.55
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.55
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.55
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.54
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.54
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.53
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.52
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.52
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.52
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.51
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.51
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.51
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.5
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.5
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.49
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.49
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.49
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.49
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.49
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.48
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.47
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.47
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.47
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.47
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.47
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.47
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.46
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.45
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.45
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.43
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.43
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.42
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.41
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.41
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.4
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.39
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.39
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.38
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.38
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.37
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.36
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.35
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.35
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.33
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.33
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.29
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.28
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.27
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.26
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.24
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.23
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.22
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.22
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.2
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.16
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.15
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.14
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.13
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.13
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.12
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.07
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.05
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	99.02
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	98.94
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.92
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.91
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.79
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.78
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	98.7
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.67
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.61
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.53
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.49
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.4
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.36
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	98.33
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.27
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.21
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.14
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.1
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.09
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	98.03
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.0
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.95
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	97.92
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.87
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	97.85
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.84
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.82
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.77
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.65
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.6
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.56
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.51
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.46
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	97.04
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.0
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	96.66
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.65
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	96.01
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	95.9
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	95.8
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	95.76
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	95.6
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	95.21
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.1
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	94.42
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	94.21
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	93.96
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	93.92
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	93.84
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	93.84
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	93.77
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	93.68
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	93.62
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	93.05
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	92.91
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	92.85
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	92.35
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	92.32
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	92.25
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	91.99
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	91.89
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	91.83
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	91.65
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	90.01
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	88.58
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	88.54
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	87.91
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	86.81
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	86.61
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	86.29
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	86.02
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	85.67
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	85.24
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	84.19
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	83.44
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	83.16
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	83.11
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	82.51
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	82.28
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	82.22
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	80.99
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	80.7
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	80.28
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	80.13

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=3.9e-35  Score=257.30  Aligned_cols=153  Identities=34%  Similarity=0.493  Sum_probs=147.1

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE-e-cCeeccCCCcccccccccCceEEEEEE-ecCce
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM  381 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~-~-~g~~L~d~~~l~~~~i~~~~~l~l~~~-~~~~~  381 (457)
                      |+|+|++++|+++++++++++||.+||++|++++|+|+++|+|. | +|..|+|+.+|++|++.++++++|+.+ .+++|
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m   82 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL   82 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence            78999999999999999999999999999999999999999999 9 799999999999999999999999998 48899


Q ss_pred             eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      +|+|++.+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|++++|++||.
T Consensus        83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~  158 (159)
T 3rt3_B           83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG  158 (159)
T ss_dssp             EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999994

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=2.7e-35  Score=258.32  Aligned_cols=152  Identities=34%  Similarity=0.508  Sum_probs=147.4

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEe-e-ccEEccCCCcccccccccccceeEEEE-ecCcE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM   77 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~-~-~g~~L~~~~tl~~y~i~~~sti~l~~~-~~~~~   77 (457)
                      |+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++|++++ ++++|
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m   82 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL   82 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence            89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999


Q ss_pred             EEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEeecc
Q 012736           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (457)
Q Consensus        78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~  152 (457)
                      +|+|++.+|+.+.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++||+.++++||
T Consensus        83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG  157 (159)
T 3rt3_B           83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG  157 (159)
T ss_dssp             EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998876

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=256.27  Aligned_cols=155  Identities=94%  Similarity=1.292  Sum_probs=146.7

Q ss_pred             cCceeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEEecCce
Q 012736          302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  381 (457)
Q Consensus       302 ~~~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~  381 (457)
                      ...|+|+|++++|+++++++++++||.+||++|++++|+|+++|+|.|+|+.|+|+.+|++|++.++++++|+.+..+.|
T Consensus        18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~   97 (172)
T 3u30_A           18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM   97 (172)
T ss_dssp             -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      +|+|++.+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+|+|||
T Consensus        98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG  172 (172)
T 3u30_A           98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  172 (172)
T ss_dssp             EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred             cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=257.15  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=145.6

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~   80 (457)
                      |+|||++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++|+++
T Consensus        21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~  100 (172)
T 3u30_A           21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF  100 (172)
T ss_dssp             EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEeecc
Q 012736           81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (457)
Q Consensus        81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~  152 (457)
                      |++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|.++++||+.++++||
T Consensus       101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG  172 (172)
T 3u30_A          101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  172 (172)
T ss_dssp             EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred             eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998775

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=1.4e-32  Score=239.36  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=148.2

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEEecCceeeE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF  384 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i~  384 (457)
                      |+|+|+.++|+++++++++++||++||++|++++|+|+++|+|.|+|..|+|+.+|++|++.+++++++..+.++.|+|+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~   80 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF   80 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             EEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||
T Consensus        81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  152 (152)
T 3b08_A           81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  152 (152)
T ss_dssp             EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred             eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=1.2e-32  Score=239.88  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=148.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~   80 (457)
                      |+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.+.+++|+|+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~   80 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF   80 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEeecc
Q 012736           81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (457)
Q Consensus        81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~  152 (457)
                      |++.+|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++||+.++++||
T Consensus        81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  152 (152)
T 3b08_A           81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  152 (152)
T ss_dssp             EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred             eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999988775

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.81  E-value=1.3e-19  Score=138.91  Aligned_cols=77  Identities=35%  Similarity=0.569  Sum_probs=75.5

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G  455 (457)
                      ++|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++|
T Consensus         3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred             CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999998

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.80  E-value=1.8e-19  Score=138.62  Aligned_cols=79  Identities=24%  Similarity=0.386  Sum_probs=71.3

Q ss_pred             EEEEecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          373 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       373 l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      |+...++.|+|||++..|+++.++|.|++||.+||++|++++|+||++|+|+|+|+.|+|+.||++|+|++|++|+|..
T Consensus        14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~   92 (93)
T 3plu_A           14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   92 (93)
T ss_dssp             ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred             ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence            4555678899999999999999999999999999999999999999999999999999999999999999999999864

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.80  E-value=1.5e-19  Score=141.29  Aligned_cols=77  Identities=56%  Similarity=0.917  Sum_probs=73.1

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      |+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||.
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~   77 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG   77 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999994

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.79  E-value=1.9e-19  Score=138.44  Aligned_cols=70  Identities=23%  Similarity=0.433  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~   70 (457)
                      |||||+++.|+++++++.|+|||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|.+++|+||.
T Consensus        22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999985

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.78  E-value=6.5e-19  Score=133.80  Aligned_cols=76  Identities=57%  Similarity=0.952  Sum_probs=72.9

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|+|++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999998

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.78  E-value=3.9e-19  Score=136.14  Aligned_cols=77  Identities=18%  Similarity=0.425  Sum_probs=74.8

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .|+|+|++.+|+++.++|++++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|||++|++|++.+|++||
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG   79 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   79 (79)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999998

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.78  E-value=4.9e-19  Score=138.61  Aligned_cols=79  Identities=57%  Similarity=0.963  Sum_probs=76.9

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..+|+|+|++.+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus        10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   88 (88)
T 3dbh_I           10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG   88 (88)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            3579999999999999999999999999999999999999999999999999999999999999999999999999998

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.77  E-value=9.3e-19  Score=136.96  Aligned_cols=88  Identities=28%  Similarity=0.519  Sum_probs=72.2

Q ss_pred             ccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCC
Q 012736          364 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK  443 (457)
Q Consensus       364 ~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~  443 (457)
                      |..+++++++..+.+..|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++||| +
T Consensus         1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~   79 (88)
T 4eew_A            1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G   79 (88)
T ss_dssp             --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred             CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence            345778888888888899999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             CCEEEEEEe
Q 012736          444 ESTLHLVLR  452 (457)
Q Consensus       444 ~~~i~l~~r  452 (457)
                      |++|+|+.|
T Consensus        80 g~~i~lv~R   88 (88)
T 4eew_A           80 GKVIHLVER   88 (88)
T ss_dssp             TEEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            999999986

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=8.5e-19  Score=139.87  Aligned_cols=79  Identities=94%  Similarity=1.267  Sum_probs=76.0

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+|++||
T Consensus        20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG   98 (98)
T 4hcn_B           20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   98 (98)
T ss_dssp             --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            4579999999999999999999999999999999999999999999999999999999999999999999999999998

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.77  E-value=8.2e-19  Score=139.59  Aligned_cols=79  Identities=18%  Similarity=0.407  Sum_probs=76.9

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      +..|+|+|++.+|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|++|++||
T Consensus        19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence            4569999999999999999999999999999999999999999999999999999999999999999999999999998

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=1.1e-18  Score=135.71  Aligned_cols=79  Identities=77%  Similarity=1.096  Sum_probs=73.2

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      .+|+|+|++.+|+++.++|++++||++||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|++.+|++||.
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~   80 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG   80 (85)
T ss_dssp             --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence            3699999999999999999999999999999999999999999999999999999999999999999999999999983

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=1.5e-18  Score=135.48  Aligned_cols=80  Identities=34%  Similarity=0.518  Sum_probs=77.3

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      +..|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|++..|++||.
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~   84 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP   84 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999994

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.77  E-value=1.8e-18  Score=131.32  Aligned_cols=76  Identities=95%  Similarity=1.320  Sum_probs=74.7

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|+|+..+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999998

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=1.2e-18  Score=136.20  Aligned_cols=79  Identities=85%  Similarity=1.225  Sum_probs=70.5

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      ..|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||.
T Consensus         8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~   86 (88)
T 1sif_A            8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG   86 (88)
T ss_dssp             --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred             cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999999999993

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.76  E-value=1.4e-18  Score=133.11  Aligned_cols=75  Identities=36%  Similarity=0.595  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++|
T Consensus         5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B            5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred             EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999998764

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.76  E-value=2.4e-18  Score=136.91  Aligned_cols=78  Identities=94%  Similarity=1.262  Sum_probs=74.2

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      .|+|+|++.+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|++||+
T Consensus         1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~   78 (96)
T 3k9o_B            1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA   78 (96)
T ss_dssp             -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence            489999999999999999999999999999999999999999999999999999999999999999999999999994

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=2.7e-18  Score=133.43  Aligned_cols=78  Identities=90%  Similarity=1.218  Sum_probs=75.8

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .+|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|++.+|++||
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG   79 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG   79 (85)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence            369999999999999999999999999999999999999999999999999999999999999999999999999998

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.75  E-value=2e-18  Score=136.21  Aligned_cols=77  Identities=38%  Similarity=0.647  Sum_probs=72.8

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...|+|+|++  |+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||
T Consensus        17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG   93 (93)
T 2l7r_A           17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG   93 (93)
T ss_dssp             ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred             CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            4579999998  8999999999999999999999999999999999999999999999999999999999999999998

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.75  E-value=3.4e-18  Score=134.97  Aligned_cols=79  Identities=27%  Similarity=0.411  Sum_probs=75.8

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...|+|+|++..| ++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+|++|++||
T Consensus        13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg   91 (94)
T 2kan_A           13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR   91 (94)
T ss_dssp             SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred             CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence            4679999999888 899999999999999999999999999999999999999999 99999999999999999999998


Q ss_pred             C
Q 012736          457 F  457 (457)
Q Consensus       457 ~  457 (457)
                      .
T Consensus        92 ~   92 (94)
T 2kan_A           92 A   92 (94)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=134.79  Aligned_cols=78  Identities=36%  Similarity=0.590  Sum_probs=72.2

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .+|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+++||
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg   80 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG   80 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence            469999999999999999999999999999999999999999999999999999999999999999999999999998

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=2e-19  Score=147.33  Aligned_cols=104  Identities=73%  Similarity=0.983  Sum_probs=97.9

Q ss_pred             cCcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEeecce
Q 012736           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (457)
Q Consensus        74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~~  153 (457)
                      .++.+|+|++++|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++..++++++
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~   86 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS   86 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEe---eccCceEEeeecCCchHHH
Q 012736          154 QIFVK---TLTGKTITLEVESSDTIDN  177 (457)
Q Consensus       154 ~i~v~---~~~g~~~~~~v~~~~tV~~  177 (457)
                      .++++   ...|++++++|.+++||..
T Consensus        87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           87 MGGAADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             eeeccccccccCceEEEEeccccccCC
Confidence            99988   5578999999999998853

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.75  E-value=2.9e-18  Score=133.96  Aligned_cols=77  Identities=56%  Similarity=0.924  Sum_probs=73.1

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM   77 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~   77 (457)
                      |+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++.
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~   77 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG   77 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999988875

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.74  E-value=5.4e-18  Score=138.23  Aligned_cols=78  Identities=94%  Similarity=1.272  Sum_probs=75.4

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..|+|+|+..+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus        34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            469999999999999999999999999999999999999999999999999999999999999999999999999998

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=6.7e-18  Score=132.34  Aligned_cols=79  Identities=37%  Similarity=0.617  Sum_probs=76.0

Q ss_pred             CceeeEEEcCCC-CEEEE-EecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g-~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..|+|+|+..+| +++.+ +|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus         6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG   85 (89)
T 1wy8_A            6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG   85 (89)
T ss_dssp             SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence            579999999999 79999 5999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 012736          457 F  457 (457)
Q Consensus       457 ~  457 (457)
                      .
T Consensus        86 ~   86 (89)
T 1wy8_A           86 P   86 (89)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.74  E-value=2.2e-18  Score=135.44  Aligned_cols=70  Identities=23%  Similarity=0.328  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~   70 (457)
                      |+|||+++.|++++++|.++|||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|.+++|+||+
T Consensus        29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~   98 (100)
T 1uh6_A           29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999985

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.74  E-value=2.4e-18  Score=132.98  Aligned_cols=74  Identities=22%  Similarity=0.425  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCcEEEEEec--ccccHHHHHHHH-hhhhCCCCccceEeeccEEccCCCccccccc-ccccceeEEEEec
Q 012736            1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~--~~dtv~~ik~ki-~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i-~~~sti~l~~~~~   74 (457)
                      |+|||++++|++++++|+  ++|||.++|++| ++++|+|+++|+|+|+|++|+|+.+|++|+| .+++++++..++.
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~   79 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN   79 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence            899999999999999866  999999999999 9999999999999999999999999999999 7999999988753

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.74  E-value=5.8e-18  Score=138.18  Aligned_cols=78  Identities=94%  Similarity=1.272  Sum_probs=75.3

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..|+|+|+..+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|.+|++||
T Consensus        34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999999998

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.73  E-value=9.8e-18  Score=131.91  Aligned_cols=77  Identities=91%  Similarity=1.263  Sum_probs=74.6

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~  454 (457)
                      ...|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+|
T Consensus        15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr   91 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   91 (91)
T ss_dssp             CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999986

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.73  E-value=5.3e-19  Score=144.75  Aligned_cols=104  Identities=73%  Similarity=0.983  Sum_probs=98.3

Q ss_pred             ecceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEecCCe
Q 012736          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  229 (457)
Q Consensus       150 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~~  229 (457)
                      .+.++|+|++++|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+.+++++.
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~   86 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS   86 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEE---ccCCceEEEEeecCccHHH
Q 012736          230 QIFVK---TLTGKTITLEVESSDTIDN  253 (457)
Q Consensus       230 ~i~v~---~~~g~~~~~~v~~~~tV~~  253 (457)
                      +++++   +..|++++++|++++||.+
T Consensus        87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           87 MGGAADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             eeeccccccccCceEEEEeccccccCC
Confidence            99988   4579999999999999864

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.73  E-value=8.2e-18  Score=134.27  Aligned_cols=91  Identities=81%  Similarity=1.094  Sum_probs=75.1

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~   80 (457)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+.+++.+++
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~   80 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN   80 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCcEEEE
Q 012736           81 VKTLTGKTITL   91 (457)
Q Consensus        81 vk~~~g~~~~l   91 (457)
                      .++.+|+.-.+
T Consensus        81 ~~~v~~~~~~~   91 (98)
T 1yx5_B           81 SSSVDKLAAAL   91 (98)
T ss_dssp             -----------
T ss_pred             cccCCCchhhh
Confidence            99998765443

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.73  E-value=5.4e-18  Score=130.83  Aligned_cols=73  Identities=33%  Similarity=0.473  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEE-ccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~-L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+. |+|+++|++|+|.+++++++++++
T Consensus        11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A           11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred             eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence            8999999999999999999999999999999999999999999999999 999999999999999999998764

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.72  E-value=1.4e-17  Score=130.71  Aligned_cols=78  Identities=32%  Similarity=0.549  Sum_probs=74.4

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      +..|+|+|++.+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++||| +|++|+|+.|.+++
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~   80 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ   80 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence            3579999999999999999999999999999999999999999999999999999999999999 89999999998876

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.72  E-value=9.2e-18  Score=131.25  Aligned_cols=87  Identities=29%  Similarity=0.523  Sum_probs=71.8

Q ss_pred             cccccceeEEEEecCcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccC
Q 012736           61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE  140 (457)
Q Consensus        61 i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~  140 (457)
                      +..++++++..+.+..|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +|
T Consensus         2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g   80 (88)
T 4eew_A            2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG   80 (88)
T ss_dssp             -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred             CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence            45678899998888899999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             CcceeEEE
Q 012736          141 STLHLVLR  148 (457)
Q Consensus       141 s~i~l~~~  148 (457)
                      ++||++.|
T Consensus        81 ~~i~lv~R   88 (88)
T 4eew_A           81 KVIHLVER   88 (88)
T ss_dssp             EEEEEEEC
T ss_pred             cEEEEEEC
Confidence            99999864

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.72  E-value=8.5e-18  Score=135.15  Aligned_cols=75  Identities=29%  Similarity=0.437  Sum_probs=71.9

Q ss_pred             CeEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccc-------ccceeEEEE
Q 012736            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~-------~sti~l~~~   72 (457)
                      |.||++...++ |++++|+++|||.+||++|++++|+|+++|+|+|+|++|+|++||++|+|..       ++|+||+++
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            89999999888 8899999999999999999999999999999999999999999999999999       999999998


Q ss_pred             ecC
Q 012736           73 LRG   75 (457)
Q Consensus        73 ~~~   75 (457)
                      ..+
T Consensus        81 ~~~   83 (118)
T 4ajy_B           81 ADD   83 (118)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            644

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.72  E-value=8.4e-18  Score=128.67  Aligned_cols=76  Identities=18%  Similarity=0.448  Sum_probs=73.0

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++++|++++++|.+++||.++|++|+++.|+|+++|+|+|+|+.|+|++|+++|+|.+++++|++++.+++
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG   79 (79)
T 2uyz_B            4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   79 (79)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999987763

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.72  E-value=2.5e-17  Score=131.44  Aligned_cols=77  Identities=95%  Similarity=1.291  Sum_probs=74.7

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      |+|+|++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~   77 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR   77 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999983

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.72  E-value=8.8e-18  Score=135.82  Aligned_cols=73  Identities=29%  Similarity=0.439  Sum_probs=69.9

Q ss_pred             CeEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccc-------cccceeEEEE
Q 012736            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~-------~~sti~l~~~   72 (457)
                      |+|||+...|+ +++++|+++|||.+||++|++++|||+++|+|+|+|++|+|++||++|+|.       .+||+||+++
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            89999999887 699999999999999999999999999999999999999999999999999       7999999988


Q ss_pred             e
Q 012736           73 L   73 (457)
Q Consensus        73 ~   73 (457)
                      .
T Consensus        81 ~   81 (118)
T 2fnj_B           81 A   81 (118)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.71  E-value=1.1e-17  Score=131.40  Aligned_cols=73  Identities=22%  Similarity=0.294  Sum_probs=70.3

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      ++|+|+|+++.|+++.++|.|++||.+||++|++++|+|+++|+|+|+|++|+|+.||++|||+++++|+|+.
T Consensus        27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence            4599999999999999999999999999999999999999999999999999999999999999999999874

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.71  E-value=2e-17  Score=127.62  Aligned_cols=74  Identities=32%  Similarity=0.472  Sum_probs=71.6

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCee-cCCCCcccccCCCCCCEEEEEEe
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~-L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      .-|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|||++|++|+|++|
T Consensus         9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred             CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence            359999999999999999999999999999999999999999999999999 99999999999999999999886

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.71  E-value=3.1e-17  Score=143.70  Aligned_cols=77  Identities=96%  Similarity=1.293  Sum_probs=74.2

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      |+|+|++.+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||.
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~   77 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG   77 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999994

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=3.7e-17  Score=124.75  Aligned_cols=75  Identities=36%  Similarity=0.657  Sum_probs=71.4

Q ss_pred             CceeeEEEcCCCCEE-EEE-ecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          379 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~-~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      +.|+|+|++.+|+++ .++ |++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|+
T Consensus         1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            469999999999885 999 999999999999999999999999999999999999999999999999999999986

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.71  E-value=1.4e-17  Score=132.37  Aligned_cols=76  Identities=18%  Similarity=0.448  Sum_probs=73.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|++|+|++||++|+|.++++||++++++++
T Consensus        22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999987764

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.70  E-value=2.5e-17  Score=134.48  Aligned_cols=79  Identities=33%  Similarity=0.468  Sum_probs=76.4

Q ss_pred             cCceeeEEEcC---CCCEEEEEecC-CccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          378 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       378 ~~~~~i~v~~~---~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      +++|+|+|+++   +|+.+.++|++ ++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|.+|+
T Consensus        25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~  104 (111)
T 1we6_A           25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE  104 (111)
T ss_dssp             CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred             CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence            46799999998   88999999998 999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 012736          454 RGG  456 (457)
Q Consensus       454 ~GG  456 (457)
                      +||
T Consensus       105 ~GG  107 (111)
T 1we6_A          105 RSG  107 (111)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            999

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.70  E-value=4.6e-17  Score=123.46  Aligned_cols=76  Identities=57%  Similarity=0.952  Sum_probs=72.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987653

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.70  E-value=2.1e-17  Score=133.59  Aligned_cols=75  Identities=28%  Similarity=0.431  Sum_probs=68.2

Q ss_pred             eeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCC-------CCCEEEEEEe
Q 012736          381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR  452 (457)
Q Consensus       381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~-------~~~~i~l~~r  452 (457)
                      |++|++...++ ++.++|.+++||++||.+|++++|||+++|||+|+|+.|+|++||++|||+       .++||+|++|
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            55666655565 589999999999999999999999999999999999999999999999999       7999999999


Q ss_pred             cCCC
Q 012736          453 LRGG  456 (457)
Q Consensus       453 ~~GG  456 (457)
                       .||
T Consensus        81 -~~g   83 (118)
T 2fnj_B           81 -ADD   83 (118)
T ss_dssp             -SSS
T ss_pred             -CCC
Confidence             665

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.70  E-value=3.4e-17  Score=128.58  Aligned_cols=74  Identities=34%  Similarity=0.585  Sum_probs=71.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|||++++|++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +++++|++++.+.
T Consensus         6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~   79 (90)
T 4dwf_A            6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP   79 (90)
T ss_dssp             EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999 8999999998654

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.70  E-value=3.4e-17  Score=129.31  Aligned_cols=78  Identities=29%  Similarity=0.500  Sum_probs=74.0

Q ss_pred             CceeeEEEcCCCC--EEEEEecCCccHHHHHHHHhhhc--CCCCCCeEEEEcCeecCCCCccccc--CCCCCCEEEEEEe
Q 012736          379 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR  452 (457)
Q Consensus       379 ~~~~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~--gip~~~q~l~~~g~~L~d~~tL~~~--~i~~~~~i~l~~r  452 (457)
                      ..|+|+|++.+|+  .+.++|++++||++||++|++.+  |+|+++|+|+|+|+.|+|+.+|++|  +|+++++|+|++|
T Consensus         6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~   85 (93)
T 1wgd_A            6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence            4689999999888  67777889999999999999999  9999999999999999999999999  9999999999999


Q ss_pred             cCCC
Q 012736          453 LRGG  456 (457)
Q Consensus       453 ~~GG  456 (457)
                      ++||
T Consensus        86 ~~gg   89 (93)
T 1wgd_A           86 VKSG   89 (93)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9998

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.53  E-value=1.3e-18  Score=132.22  Aligned_cols=75  Identities=33%  Similarity=0.588  Sum_probs=73.5

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G  455 (457)
                      |+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|+||
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999998

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.69  E-value=3.2e-17  Score=128.21  Aligned_cols=76  Identities=58%  Similarity=0.975  Sum_probs=73.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus        13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   88 (88)
T 3dbh_I           13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG   88 (88)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999887764

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=4e-17  Score=124.53  Aligned_cols=73  Identities=36%  Similarity=0.643  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCcEE-EEE-ecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~-~~~-v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++.+|+++ +++ |.+++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus         3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            8999999999995 999 999999999999999999999999999999999999999999999999999999875

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.69  E-value=5.5e-17  Score=143.47  Aligned_cols=81  Identities=90%  Similarity=1.184  Sum_probs=78.2

Q ss_pred             ecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       377 ~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ....|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus       102 d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG  181 (189)
T 3q3f_A          102 DHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  181 (189)
T ss_dssp             CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred             cccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 012736          457 F  457 (457)
Q Consensus       457 ~  457 (457)
                      .
T Consensus       182 ~  182 (189)
T 3q3f_A          182 G  182 (189)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=5.2e-17  Score=126.79  Aligned_cols=76  Identities=87%  Similarity=1.271  Sum_probs=70.2

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus        10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG   85 (88)
T 1sif_A           10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   85 (88)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred             eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999887764

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.69  E-value=4.6e-17  Score=128.04  Aligned_cols=74  Identities=92%  Similarity=1.261  Sum_probs=71.8

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      |+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++
T Consensus        18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr   91 (91)
T 3v6c_B           18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   91 (91)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998764

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=5.6e-17  Score=129.27  Aligned_cols=76  Identities=97%  Similarity=1.333  Sum_probs=73.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++.+|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus        23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG   98 (98)
T 4hcn_B           23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   98 (98)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999988764

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.69  E-value=5.7e-17  Score=130.36  Aligned_cols=77  Identities=30%  Similarity=0.452  Sum_probs=70.5

Q ss_pred             eeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCC-------CCEEEEEEe
Q 012736          381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR  452 (457)
Q Consensus       381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~-------~~~i~l~~r  452 (457)
                      |.+|++...++ ++.++|.+++||.+||.+|++++|+|+++|||+|+|+.|+|++||++|||++       +++|+|++|
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            56778776666 7888999999999999999999999999999999999999999999999999       999999999


Q ss_pred             cCCCC
Q 012736          453 LRGGF  457 (457)
Q Consensus       453 ~~GG~  457 (457)
                      ..|+|
T Consensus        81 ~~~~f   85 (118)
T 4ajy_B           81 ADDTF   85 (118)
T ss_dssp             CSSCC
T ss_pred             cCCCc
Confidence            85543

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.68  E-value=5.5e-17  Score=132.72  Aligned_cols=76  Identities=26%  Similarity=0.458  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCcEE-EEEecccccHHHHHHHH-----hhhhCCCC--ccceEeeccEEccCCCcccccccccc------cc
Q 012736            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST   66 (457)
Q Consensus         1 ~~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki-----~~~~~ip~--~~q~l~~~g~~L~~~~tl~~y~i~~~------st   66 (457)
                      |+|+|++.+|+.+ +++++++|||.+||++|     ++++|+|+  ++|+|+|+|++|+|++||++|+|..+      +|
T Consensus        17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t   96 (126)
T 1se9_A           17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   96 (126)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence            7899999999988 79999999999999999     77889997  89999999999999999999999988      78


Q ss_pred             eeEEEEecCc
Q 012736           67 LHLVLRLRGG   76 (457)
Q Consensus        67 i~l~~~~~~~   76 (457)
                      +||+++++++
T Consensus        97 mhlVlrl~g~  106 (126)
T 1se9_A           97 MHVIIQAPVT  106 (126)
T ss_dssp             EEEEECCCSS
T ss_pred             EEEEeccCCc
Confidence            9999988764

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.68  E-value=3.1e-17  Score=128.08  Aligned_cols=76  Identities=37%  Similarity=0.616  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+++++
T Consensus         5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg   80 (88)
T 2hj8_A            5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG   80 (88)
T ss_dssp             EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999887654

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=1e-16  Score=123.23  Aligned_cols=77  Identities=39%  Similarity=0.674  Sum_probs=73.6

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~  454 (457)
                      ...|+|+|+..+|+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++
T Consensus         5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~   81 (81)
T 2dzi_A            5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL   81 (81)
T ss_dssp             SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999874

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.68  E-value=4.3e-17  Score=125.99  Aligned_cols=73  Identities=22%  Similarity=0.424  Sum_probs=69.1

Q ss_pred             ceeeEEEcCCCCEEEEEec--CCccHHHHHHHH-hhhcCCCCCCeEEEEcCeecCCCCcccccCC-CCCCEEEEEEe
Q 012736          380 GMQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR  452 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~--~~~tV~~lK~~i-~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~l~~r  452 (457)
                      .|+|+|++..|++++++|+  +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+|++|+|.++
T Consensus         1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~   77 (87)
T 2lxa_A            1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK   77 (87)
T ss_dssp             CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence            4899999999999999866  999999999999 9999999999999999999999999999999 69999999876

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.68  E-value=1e-16  Score=127.46  Aligned_cols=79  Identities=91%  Similarity=1.240  Sum_probs=74.0

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI   79 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i   79 (457)
                      |+|+|++.+|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++...
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~   80 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL   80 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999888664

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=1e-16  Score=127.96  Aligned_cols=78  Identities=33%  Similarity=0.432  Sum_probs=74.7

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...|+|+|+..+|+ +.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..|++||
T Consensus        20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~   97 (100)
T 1yqb_A           20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR   97 (100)
T ss_dssp             TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence            45799999999886 7999999999999999999999999999999999999999999999999999999999999997

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=8.3e-17  Score=124.94  Aligned_cols=76  Identities=80%  Similarity=1.167  Sum_probs=72.6

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   79 (85)
T 3n3k_B            4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG   79 (85)
T ss_dssp             CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999988764

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.67  E-value=8.7e-17  Score=126.85  Aligned_cols=75  Identities=28%  Similarity=0.461  Sum_probs=72.1

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCC-CcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|||++++| +++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+ .+|++|+|.++++++++++++++
T Consensus        16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg   91 (94)
T 2kan_A           16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR   91 (94)
T ss_dssp             EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred             EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence            7899999988 999999999999999999999999999999999999999999 99999999999999999988764

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.67  E-value=1e-16  Score=140.46  Aligned_cols=126  Identities=65%  Similarity=0.859  Sum_probs=96.0

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~   80 (457)
                      |||+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+++++|++++++++.+-.
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~   80 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET   80 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             EEccC-Cc--EEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccccc
Q 012736           81 VKTLT-GK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG  129 (457)
Q Consensus        81 vk~~~-g~--~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~  129 (457)
                      |++.. |.  .-.+.+.++.++.+-.+.+.-..   .+..+..|+-+-|.+-
T Consensus        81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~~i~~---~~~~~~~fsl~yl~~~  129 (169)
T 3l0w_B           81 IKFVADGDIGSGSVIIKPFVDMEHPETSIKLEM---DQPVDLTFGAKYLLDI  129 (169)
T ss_dssp             EEEEEECSSCEEEEEECCBCCSSCGGGCBEEEE---SSCEEEEEEHHHHHHH
T ss_pred             ccccccCcccceeEEEecCCCCCCcccceEEec---CCcceEEEhHHHHHHH
Confidence            76542 32  34566666555432222111111   1234566666655543

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.67  E-value=1.6e-16  Score=120.49  Aligned_cols=76  Identities=95%  Similarity=1.320  Sum_probs=73.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++.+|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987764

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=1e-16  Score=125.93  Aligned_cols=66  Identities=23%  Similarity=0.355  Sum_probs=64.0

Q ss_pred             CCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ++.++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++| ++++++|.
T Consensus        29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~   94 (100)
T 1wju_A           29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS   94 (100)
T ss_dssp             SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred             CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence            7789999999999999999999999999999999999999999999999999999999 99999985

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=1e-16  Score=125.00  Aligned_cols=76  Identities=34%  Similarity=0.532  Sum_probs=73.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG   83 (87)
T 1wh3_A            8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred             EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999988765

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=1.1e-16  Score=129.84  Aligned_cols=74  Identities=24%  Similarity=0.419  Sum_probs=68.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhh------hhCC--CCccceEeeccEEccCCCcccccccccc--cceeEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~------~~~i--p~~~q~l~~~g~~L~~~~tl~~y~i~~~--sti~l~   70 (457)
                      |+|+|+++.|++++++|++++||.+||++|++      ++|+  |+++|+|+|+|++|+|++||++|+|..+  +++||+
T Consensus        17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv   96 (116)
T 1wgh_A           17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            78999999999999999999999999999999      7786  6999999999999999999999999755  789999


Q ss_pred             EEec
Q 012736           71 LRLR   74 (457)
Q Consensus        71 ~~~~   74 (457)
                      +++.
T Consensus        97 lr~~  100 (116)
T 1wgh_A           97 ARET  100 (116)
T ss_dssp             ECSS
T ss_pred             ccCC
Confidence            8765

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.67  E-value=2.9e-16  Score=121.86  Aligned_cols=76  Identities=29%  Similarity=0.501  Sum_probs=71.6

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      +.+|+|+|++.+|+.+.++|++++||++||++|++.   +|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+.
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence            468999999999999999999999999999999998   8999999999999999999999999999999999998764

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=6.6e-17  Score=128.48  Aligned_cols=77  Identities=27%  Similarity=0.340  Sum_probs=74.7

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..|+|+|+.. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.|++||
T Consensus        16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g   92 (96)
T 1wx8_A           16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG   92 (96)
T ss_dssp             CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred             CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence            4689999998 9999999999999999999999999999999999999999999999999999999999999999998

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.66  E-value=4.4e-17  Score=144.05  Aligned_cols=82  Identities=91%  Similarity=1.230  Sum_probs=79.8

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~   80 (457)
                      |||||++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+++++++..++
T Consensus       106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f  185 (189)
T 3q3f_A          106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF  185 (189)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred             eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             EE
Q 012736           81 VK   82 (457)
Q Consensus        81 vk   82 (457)
                      ||
T Consensus       186 vk  187 (189)
T 3q3f_A          186 TK  187 (189)
T ss_dssp             CC
T ss_pred             Ee
Confidence            75

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.66  E-value=6.6e-17  Score=128.83  Aligned_cols=78  Identities=24%  Similarity=0.393  Sum_probs=73.4

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCC---------------CCeEEEEcCeecC-CCCcccccCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQ  442 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~---------------~~q~l~~~g~~L~-d~~tL~~~~i~  442 (457)
                      ..|+|+|++++|++++++|.+++||++||++|++++++|+               ++|+|+|+|+.|. |++||++|||+
T Consensus         6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~   85 (105)
T 1v2y_A            6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR   85 (105)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred             CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence            4699999999999999999999999999999999999988               4679999999996 66899999999


Q ss_pred             CCCEEEEEEecCCC
Q 012736          443 KESTLHLVLRLRGG  456 (457)
Q Consensus       443 ~~~~i~l~~r~~GG  456 (457)
                      +|++|+++.|++|.
T Consensus        86 ~g~~l~lv~~lr~~   99 (105)
T 1v2y_A           86 NRDEVSFIKKLGQK   99 (105)
T ss_dssp             SSEEEEEEECSCSC
T ss_pred             CCCEEEEEehhccC
Confidence            99999999999985

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.66  E-value=1.4e-16  Score=125.82  Aligned_cols=72  Identities=21%  Similarity=0.440  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCcEEEE--EecccccHHHHHHHH-hhhhCCCCccceEeeccEEccCCCccccccc-ccccceeEEEE
Q 012736            1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~--~v~~~dtv~~ik~ki-~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i-~~~sti~l~~~   72 (457)
                      |+|+|++++|++|++  +|.+++||.++|++| +++.|+|+++|+|+|+|+.|+|+.+|++|+| .++++++++++
T Consensus        20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs   95 (98)
T 4a20_A           20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK   95 (98)
T ss_dssp             EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence            799999999998887  555999999999999 9999999999999999999999999999999 99999999875

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=1.9e-16  Score=122.90  Aligned_cols=76  Identities=92%  Similarity=1.254  Sum_probs=73.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG   79 (85)
T 3mtn_B            4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG   79 (85)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987764

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.66  E-value=1.4e-16  Score=125.50  Aligned_cols=74  Identities=36%  Similarity=0.620  Sum_probs=71.4

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++  |++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus        20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG   93 (93)
T 2l7r_A           20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG   93 (93)
T ss_dssp             CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred             EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            8999999  8999999999999999999999999999999999999999999999999999999999999988764

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=4.7e-16  Score=123.18  Aligned_cols=75  Identities=29%  Similarity=0.573  Sum_probs=71.5

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G  455 (457)
                      |+|+|++.+|+.+.++|++++||++||.+|++.   +|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+...
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~   78 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence            789999999999999999999999999999999   899999999999999999999999999999999999987543

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.66  E-value=2.3e-16  Score=129.11  Aligned_cols=79  Identities=25%  Similarity=0.440  Sum_probs=73.8

Q ss_pred             cCceeeEEEcCCCCEE-EEEecCCccHHHHHHHH-----hhhcCCCC--CCeEEEEcCeecCCCCcccccCCCCC-----
Q 012736          378 RGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE-----  444 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i-----~~~~gip~--~~q~l~~~g~~L~d~~tL~~~~i~~~-----  444 (457)
                      ...|+|++++.+|+.+ .+++++++||++||++|     ++++|+|+  ++|+|+|.|+.|+|+.||++|+|+.|     
T Consensus        14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~   93 (126)
T 1se9_A           14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   93 (126)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence            4679999999999888 79999999999999999     66779997  89999999999999999999999998     


Q ss_pred             -CEEEEEEecCCC
Q 012736          445 -STLHLVLRLRGG  456 (457)
Q Consensus       445 -~~i~l~~r~~GG  456 (457)
                       ++++|++|++||
T Consensus        94 v~tmhlVlrl~g~  106 (126)
T 1se9_A           94 VTTMHVIIQAPVT  106 (126)
T ss_dssp             CEEEEEEECCCSS
T ss_pred             cEEEEEEeccCCc
Confidence             789999999997

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.66  E-value=2.6e-16  Score=129.19  Aligned_cols=79  Identities=29%  Similarity=0.561  Sum_probs=72.4

Q ss_pred             CceeeEEEcC----------CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEE
Q 012736          379 GGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH  448 (457)
Q Consensus       379 ~~~~i~v~~~----------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~  448 (457)
                      .+++|.|+..          +|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+
T Consensus        24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~  103 (115)
T 1we7_A           24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH  103 (115)
T ss_dssp             SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred             CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence            4556666553          578999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCC
Q 012736          449 LVLRLRGGF  457 (457)
Q Consensus       449 l~~r~~GG~  457 (457)
                      |++|++||.
T Consensus       104 lv~rl~GGk  112 (115)
T 1we7_A          104 LALKERSGP  112 (115)
T ss_dssp             EEECCCSCC
T ss_pred             EEEEcCCCC
Confidence            999999993

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=2e-16  Score=123.94  Aligned_cols=76  Identities=37%  Similarity=0.627  Sum_probs=72.9

Q ss_pred             CeEEEEcCCC-cEEEE-EecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g-~~~~~-~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++.+| +++++ +|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus         8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG   85 (89)
T 1wy8_A            8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG   85 (89)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence            7999999999 79999 5999999999999999999999999999999999999999999999999999999988765

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.66  E-value=4.6e-17  Score=129.73  Aligned_cols=76  Identities=24%  Similarity=0.385  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCc---------------cceEeeccEEcc-CCCcccccccccc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE   64 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~---------------~q~l~~~g~~L~-~~~tl~~y~i~~~   64 (457)
                      |+|+|++++|++++++|.+++||.+||++|++++|+|+.               +|+|+|+|+.|. |++||++|+|.++
T Consensus         8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g   87 (105)
T 1v2y_A            8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence            899999999999999999999999999999999999884               569999999996 6799999999999


Q ss_pred             cceeEEEEecCc
Q 012736           65 STLHLVLRLRGG   76 (457)
Q Consensus        65 sti~l~~~~~~~   76 (457)
                      +++||++++++.
T Consensus        88 ~~l~lv~~lr~~   99 (105)
T 1v2y_A           88 DEVSFIKKLGQK   99 (105)
T ss_dssp             EEEEEEECSCSC
T ss_pred             CEEEEEehhccC
Confidence            999999987754

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.47  E-value=7.3e-18  Score=128.00  Aligned_cols=75  Identities=33%  Similarity=0.588  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++++
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            899999999999999999999999999999999999999999999999999999999999999999999998764

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.65  E-value=7.9e-18  Score=140.96  Aligned_cols=77  Identities=96%  Similarity=1.320  Sum_probs=0.4

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      |+|+|++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.||++|||++|++|+|++|++||.
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~   77 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI   77 (128)
T ss_dssp             ----------------------------------------------------------------------------C
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999993

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.5e-16  Score=128.48  Aligned_cols=74  Identities=22%  Similarity=0.437  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++..
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~   75 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK   75 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998643

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.65  E-value=2.3e-16  Score=127.39  Aligned_cols=74  Identities=22%  Similarity=0.409  Sum_probs=70.3

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      .|+|+|++.+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.++.
T Consensus         1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~   74 (106)
T 3m62_B            1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ   74 (106)
T ss_dssp             --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred             CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999874

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.65  E-value=2.6e-16  Score=128.18  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=73.2

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus        36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999988764

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=4.2e-16  Score=129.37  Aligned_cols=77  Identities=30%  Similarity=0.367  Sum_probs=71.1

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..|+|+|++. |+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.|++||
T Consensus        31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg  107 (125)
T 1j8c_A           31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN  107 (125)
T ss_dssp             CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred             CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence            4699999998 9999999999999999999999999999999999999999999999999999999999999999998

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.64  E-value=1.1e-17  Score=143.00  Aligned_cols=76  Identities=97%  Similarity=1.333  Sum_probs=0.0

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG   76 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (152)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999999

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.64  E-value=5.2e-16  Score=122.61  Aligned_cols=76  Identities=20%  Similarity=0.413  Sum_probs=69.8

Q ss_pred             cCceeeEEEcCCCCEEEE--EecCCccHHHHHHHH-hhhcCCCCCCeEEEEcCeecCCCCcccccCC-CCCCEEEEEEec
Q 012736          378 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL  453 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l--~v~~~~tV~~lK~~i-~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~l~~r~  453 (457)
                      ...|+|+|++.+|+++++  +|++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++||| ++|++|++.++-
T Consensus        17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk   96 (98)
T 4a20_A           17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   96 (98)
T ss_dssp             -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred             CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence            467999999999998777  566999999999999 8899999999999999999999999999999 999999998753

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=5.6e-16  Score=122.71  Aligned_cols=73  Identities=30%  Similarity=0.597  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhh---hCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~---~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++.+|++++++|.+++||.+||++|+++   .|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~   76 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK   76 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence            899999999999999999999999999999999   8999999999999999999999999999999999998853

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.64  E-value=3e-16  Score=125.94  Aligned_cols=78  Identities=21%  Similarity=0.397  Sum_probs=73.3

Q ss_pred             CceeeEEEcCCC----CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEEEec
Q 012736          379 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       379 ~~~~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r~  453 (457)
                      ..|+|+|++.++    +++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|..+.
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~   85 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence            358999998754    7999999999999999999999999999999999999999988 69999999999999999999


Q ss_pred             CCC
Q 012736          454 RGG  456 (457)
Q Consensus       454 ~GG  456 (457)
                      +||
T Consensus        86 ~gg   88 (102)
T 1v5o_A           86 NVG   88 (102)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            998

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.64  E-value=7.5e-16  Score=117.08  Aligned_cols=71  Identities=34%  Similarity=0.574  Sum_probs=68.8

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      |+|+|++ +|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..+
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            8999999 8999999999999999999999999999999999999999999999999999999999999875

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=4.9e-16  Score=125.69  Aligned_cols=77  Identities=34%  Similarity=0.442  Sum_probs=73.9

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..|+|+|+...|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..|++||
T Consensus        16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~   92 (106)
T 1wx7_A           16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR   92 (106)
T ss_dssp             SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred             ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence            4589999998886 7999999999999999999999999999999999999999999999999999999999999998

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.64  E-value=9.6e-16  Score=122.60  Aligned_cols=79  Identities=30%  Similarity=0.378  Sum_probs=74.3

Q ss_pred             ecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       377 ~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ....|+|+|+.. |+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|..++++.
T Consensus        22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~  100 (101)
T 2klc_A           22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR  100 (101)
T ss_dssp             -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred             CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence            456799999998 8899999999999999999999999999999999999999999999999999999999999998764

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.64  E-value=5.3e-16  Score=120.33  Aligned_cols=73  Identities=30%  Similarity=0.540  Sum_probs=69.9

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhh---hCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~---~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++.+|++++++|.+++||.++|++|+++   .|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+.
T Consensus         6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A            6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred             EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence            799999999999999999999999999999998   8999999999999999999999999999999999998764

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=6.1e-16  Score=125.03  Aligned_cols=79  Identities=27%  Similarity=0.449  Sum_probs=74.8

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+...+
T Consensus        21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~   99 (106)
T 1ttn_A           21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ   99 (106)
T ss_dssp             CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred             CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            3569999999999999999999999999999999999999999999999999999999999999999999999987654

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=5.5e-16  Score=119.05  Aligned_cols=73  Identities=40%  Similarity=0.690  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus         8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998765

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.63  E-value=1.1e-15  Score=124.04  Aligned_cols=79  Identities=23%  Similarity=0.350  Sum_probs=71.5

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhh------hcCC--CCCCeEEEEcCeecCCCCcccccCCCCC--CEE
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STL  447 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gi--p~~~q~l~~~g~~L~d~~tL~~~~i~~~--~~i  447 (457)
                      ...|+|+|++..|++++++|++++||++||++|++      ++++  |+++|||+|.|+.|+|+.||++|+|..+  ++|
T Consensus        14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl   93 (116)
T 1wgh_A           14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM   93 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence            35699999999999999999999999999999999      6675  6999999999999999999999999866  678


Q ss_pred             EEEEecCCC
Q 012736          448 HLVLRLRGG  456 (457)
Q Consensus       448 ~l~~r~~GG  456 (457)
                      ||++|+.+.
T Consensus        94 hLvlr~~~~  102 (116)
T 1wgh_A           94 HLVARETLP  102 (116)
T ss_dssp             EEEECSSCS
T ss_pred             EEEccCCCC
Confidence            888887653

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.63  E-value=3.3e-16  Score=128.96  Aligned_cols=75  Identities=24%  Similarity=0.378  Sum_probs=69.1

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhh------hhCCC--CccceEeeccEEccCCCccccccccccc--ceeEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~------~~~ip--~~~q~l~~~g~~L~~~~tl~~y~i~~~s--ti~l~   70 (457)
                      |+|+|+++.|++++++|++++||.+||++|++      ++|+|  +++|+|+|+|+.|+|++||++|+|..++  ++||+
T Consensus        18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv   97 (125)
T 2gow_A           18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   97 (125)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            68999999999999999999999999999999      88985  8999999999999999999999998665  78998


Q ss_pred             EEecC
Q 012736           71 LRLRG   75 (457)
Q Consensus        71 ~~~~~   75 (457)
                      ++++.
T Consensus        98 ~r~~~  102 (125)
T 2gow_A           98 ARETL  102 (125)
T ss_dssp             ECSCC
T ss_pred             ecCCC
Confidence            88654

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.4e-16  Score=127.32  Aligned_cols=91  Identities=32%  Similarity=0.533  Sum_probs=67.7

Q ss_pred             cccccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccc
Q 012736          359 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD  438 (457)
Q Consensus       359 ~l~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~  438 (457)
                      ..++|.++  +|.++.......|.|+|++ .|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++
T Consensus         9 ~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~   85 (101)
T 3m63_B            9 PMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVES   85 (101)
T ss_dssp             ----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTT
T ss_pred             CccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHH
Confidence            45677775  5666665555567888887 88999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEEEEEe
Q 012736          439 YNIQKESTLHLVLR  452 (457)
Q Consensus       439 ~~i~~~~~i~l~~r  452 (457)
                      |||++|++|+|+.+
T Consensus        86 ~gI~~g~tI~lv~~   99 (101)
T 3m63_B           86 YHIQDGHSVHLVKS   99 (101)
T ss_dssp             TTCCTTEEEEECCC
T ss_pred             CCCCCCCEEEEEeC
Confidence            99999999999865

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.63  E-value=4.4e-16  Score=122.86  Aligned_cols=76  Identities=29%  Similarity=0.482  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCc--EEEEEecccccHHHHHHHHhhhh--CCCCccceEeeccEEccCCCccccc--ccccccceeEEEEec
Q 012736            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~~--~ip~~~q~l~~~g~~L~~~~tl~~y--~i~~~sti~l~~~~~   74 (457)
                      |+|+|++.+|+  +++++|.+++||.++|++|+++.  |+|+++|+|+|.|+.|+|+.+|++|  +|.+++++||+++++
T Consensus         8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~   87 (93)
T 1wgd_A            8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK   87 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred             EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence            79999999998  77888889999999999999998  9999999999999999999999999  999999999998876


Q ss_pred             Cc
Q 012736           75 GG   76 (457)
Q Consensus        75 ~~   76 (457)
                      ++
T Consensus        88 gg   89 (93)
T 1wgd_A           88 SG   89 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.63  E-value=6.4e-16  Score=122.42  Aligned_cols=73  Identities=23%  Similarity=0.240  Sum_probs=68.7

Q ss_pred             CeEEEEcCCC--cEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccc-ccccceeEEEEe
Q 012736            1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i-~~~sti~l~~~~   73 (457)
                      |+|||++..|  .+++++|.|++||.+||++|++++|+|+++|+++|+|+.++|++||++|+| .+++++||++-.
T Consensus        25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~  100 (105)
T 4dbg_A           25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS  100 (105)
T ss_dssp             EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred             EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence            6899999875  799999999999999999999999999999999999999999999999999 699999998753

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.63  E-value=6.2e-16  Score=121.50  Aligned_cols=71  Identities=23%  Similarity=0.294  Sum_probs=64.2

Q ss_pred             EEEcCC----CcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            4 FVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         4 ~~~~~~----g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      -|+..+    |++++++|++++||.++|++|++++|+|+++|+|+|+|++|+|++||++|+|.+++++ +++++++
T Consensus        19 ~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg   93 (100)
T 1wju_A           19 EVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ   93 (100)
T ss_dssp             EEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred             EEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence            344555    7899999999999999999999999999999999999999999999999999999999 6665553

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.62  E-value=9.2e-16  Score=126.33  Aligned_cols=78  Identities=23%  Similarity=0.342  Sum_probs=72.6

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhh------hcCCC--CCCeEEEEcCeecCCCCcccccCCCCCC--EEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLH  448 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gip--~~~q~l~~~g~~L~d~~tL~~~~i~~~~--~i~  448 (457)
                      ..|+|+|++.+|++++++|++++||++||++|++      ++|+|  +++|+|+|.|+.|+|+.||++|+|..++  +++
T Consensus        16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh   95 (125)
T 2gow_A           16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH   95 (125)
T ss_dssp             TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred             CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence            4589999999999999999999999999999999      78884  9999999999999999999999999776  789


Q ss_pred             EEEecCCC
Q 012736          449 LVLRLRGG  456 (457)
Q Consensus       449 l~~r~~GG  456 (457)
                      |++|++||
T Consensus        96 lv~r~~~~  103 (125)
T 2gow_A           96 LVARETLP  103 (125)
T ss_dssp             EEECSCCS
T ss_pred             EEecCCCC
Confidence            99999876

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.61  E-value=1.3e-15  Score=115.82  Aligned_cols=72  Identities=33%  Similarity=0.559  Sum_probs=69.1

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++ +|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.++
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence            7899999 99999999999999999999999999999999999999999999999999999999999998653

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.61  E-value=4.3e-16  Score=124.51  Aligned_cols=93  Identities=31%  Similarity=0.518  Sum_probs=67.6

Q ss_pred             cCcccccccccCCcceeEEEeecceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCc
Q 012736          129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL  208 (457)
Q Consensus       129 ~~tl~~y~i~~~s~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL  208 (457)
                      ...+++|.|  +++.++..+....+.|+|+. +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|
T Consensus         7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL   83 (101)
T 3m63_B            7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV   83 (101)
T ss_dssp             ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred             cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence            457889988  46667766666667888887 899999999999999999999999999999999999999999999999


Q ss_pred             cccCcCcCcEEEEEEE
Q 012736          209 ADYNIQKESTLHLVLR  224 (457)
Q Consensus       209 ~~y~i~~~~~i~l~~~  224 (457)
                      ++|||++|++|+|+.+
T Consensus        84 ~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           84 ESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             TTTTCCTTEEEEECCC
T ss_pred             HHCCCCCCCEEEEEeC
Confidence            9999999999999865

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.60  E-value=1e-15  Score=123.74  Aligned_cols=74  Identities=28%  Similarity=0.525  Sum_probs=71.3

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      |+|+|++++|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+.+
T Consensus        24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~   97 (106)
T 1ttn_A           24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP   97 (106)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999988643

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.60  E-value=9.2e-16  Score=121.52  Aligned_cols=70  Identities=24%  Similarity=0.394  Sum_probs=65.2

Q ss_pred             CeEEEEcCCCc--EEEEEecccccHHHHHHHHhhh-hCCC-CccceEeeccEEccCCCccccc--ccccccceeEE
Q 012736            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~-~~ip-~~~q~l~~~g~~L~~~~tl~~y--~i~~~sti~l~   70 (457)
                      |+|+|++++|+  +++++|.+++||.+||++|+++ +|+| +++|+|+|+|++|+|+++|++|  +|.+++++||+
T Consensus        24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            78999999998  7899999999999999999986 6766 4999999999999999999999  99999999984

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.59  E-value=1.8e-15  Score=120.76  Aligned_cols=74  Identities=35%  Similarity=0.490  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|+|++.+|+ ++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++++.++
T Consensus        23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~   96 (100)
T 1yqb_A           23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   96 (100)
T ss_dssp             EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence            78999999997 799999999999999999999999999999999999999999999999999999999987654

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.59  E-value=3.3e-15  Score=121.79  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++.+|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus        36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999987763

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.59  E-value=5.2e-15  Score=117.20  Aligned_cols=73  Identities=23%  Similarity=0.245  Sum_probs=68.0

Q ss_pred             ceeeEEEcCCC--CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCC-CCCCEEEEEEe
Q 012736          380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR  452 (457)
Q Consensus       380 ~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~l~~r  452 (457)
                      .|+|+|++..+  .+++++|.|++||++||++|++++|+||+.|||+|+|+.++|+.||++||| ++|++++|.+.
T Consensus        24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred             EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence            48899998874  689999999999999999999999999999999999999999999999999 59999999873

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.58  E-value=1.1e-16  Score=133.93  Aligned_cols=76  Identities=97%  Similarity=1.333  Sum_probs=0.0

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++++|++++++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG   76 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (128)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999887765

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.58  E-value=1.4e-15  Score=120.80  Aligned_cols=75  Identities=28%  Similarity=0.373  Sum_probs=71.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++. |++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+++|++|+|.+++++|++++++++
T Consensus        18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g   92 (96)
T 1wx8_A           18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG   92 (96)
T ss_dssp             EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred             EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence            78999999 9999999999999999999999999999999999999999999999999999999999999876653

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.58  E-value=1.5e-15  Score=123.89  Aligned_cols=76  Identities=33%  Similarity=0.468  Sum_probs=72.9

Q ss_pred             CeEEEEcC---CCcEEEEEecc-cccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~---~g~~~~~~v~~-~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|+++   +|++++++|.+ ++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus        28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG  107 (111)
T 1we6_A           28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG  107 (111)
T ss_dssp             EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred             EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence            68999999   89999999998 999999999999999999999999999999999999999999999999999887765

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.58  E-value=1.4e-16  Score=136.24  Aligned_cols=76  Identities=97%  Similarity=1.333  Sum_probs=0.0

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |||+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG   76 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (152)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987764

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.56  E-value=6.6e-15  Score=117.70  Aligned_cols=73  Identities=33%  Similarity=0.450  Sum_probs=70.2

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      |+|+|++. |++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+++
T Consensus        26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~   98 (101)
T 2klc_A           26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ   98 (101)
T ss_dssp             EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred             EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence            78999999 89999999999999999999999999999999999999999999999999999999999988754

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.56  E-value=6.1e-15  Score=122.37  Aligned_cols=75  Identities=31%  Similarity=0.401  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|+|++. |++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.+++++|++.+.+++
T Consensus        33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg  107 (125)
T 1j8c_A           33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN  107 (125)
T ss_dssp             EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred             EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence            78999999 9999999999999999999999999999999999999999999999999999999999999886654

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.56  E-value=2.6e-16  Score=137.92  Aligned_cols=71  Identities=30%  Similarity=0.415  Sum_probs=0.0

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |||||++++|++++|+|+++|||.+||++|++++|||+++|+|+|+|++|+|+++|+     ++|||||+++++++
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG   71 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG   71 (189)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence            899999999999999999999999999999999999999999999999999999998     89999999998776

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.55  E-value=4.5e-15  Score=117.51  Aligned_cols=72  Identities=24%  Similarity=0.358  Sum_probs=65.6

Q ss_pred             CceeeEEEcCCCC--EEEEEecCCccHHHHHHHHhhh-cCCCC-CCeEEEEcCeecCCCCccccc--CCCCCCEEEEE
Q 012736          379 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV  450 (457)
Q Consensus       379 ~~~~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~-~gip~-~~q~l~~~g~~L~d~~tL~~~--~i~~~~~i~l~  450 (457)
                      ..|+|+|++++|+  .++++|++++||++||++|+++ .|+|| ++|||+|.|+.|+|+.+|++|  +|+++++|+|+
T Consensus        22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            5799999999988  6799999999999999999996 56665 999999999999999999999  99999999974

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.55  E-value=3.4e-16  Score=137.16  Aligned_cols=72  Identities=29%  Similarity=0.394  Sum_probs=0.4

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      |+|||++++|++++++|++++||.+||.+|++.+|||+++|+|+|+|++|+|+.||+     ++|||+|++|++||.
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~   72 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK   72 (189)
T ss_dssp             ----------------------------------------------------------------------------C
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence            789999999999999999999999999999999999999999999999999999999     899999999999993

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.55  E-value=4.9e-15  Score=118.78  Aligned_cols=76  Identities=20%  Similarity=0.376  Sum_probs=70.3

Q ss_pred             CeEEEEcCCC----cEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCC-CcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g----~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|+|++.+|    ++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+ ++|++|+|.+++++|++.+.++
T Consensus         8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g   87 (102)
T 1v5o_A            8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV   87 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred             EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence            7999999755    7999999999999999999999999999999999999999887 6999999999999999887654


Q ss_pred             c
Q 012736           76 G   76 (457)
Q Consensus        76 ~   76 (457)
                      +
T Consensus        88 g   88 (102)
T 1v5o_A           88 G   88 (102)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.54  E-value=8.9e-15  Score=118.22  Aligned_cols=74  Identities=35%  Similarity=0.490  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|+|++.+|+ +.++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+++|++|+|.++++||++.+.++
T Consensus        18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~   91 (106)
T 1wx7_A           18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   91 (106)
T ss_dssp             EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence            78999999997 799999999999999999999999999999999999999999999999999999999987654

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.54  E-value=1.9e-14  Score=112.82  Aligned_cols=80  Identities=16%  Similarity=0.379  Sum_probs=76.6

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      +..|+|+|++.+|+.+.++|.+++++..|+.+++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++..+++||+
T Consensus         5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~   84 (94)
T 2io1_B            5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV   84 (94)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999994

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.53  E-value=2.4e-14  Score=110.63  Aligned_cols=69  Identities=29%  Similarity=0.459  Sum_probs=64.8

Q ss_pred             eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      ++++..+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..
T Consensus        14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~   82 (85)
T 2kd0_A           14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA   82 (85)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred             EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence            455667899999999999999999999999999999999999999999999999999999999999875

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.52  E-value=3e-14  Score=112.81  Aligned_cols=74  Identities=27%  Similarity=0.410  Sum_probs=70.1

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEEEecCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG  455 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r~~G  455 (457)
                      ..|+|+|++.+|+.+.++|++++||.+||.+|++.+   +++|+|+|+|+.|+|+ .+|++|||++|++|+|+.+..+
T Consensus         6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~   80 (95)
T 1wia_A            6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence            569999999999999999999999999999999998   8999999999999999 9999999999999999998655

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=6.9e-15  Score=116.26  Aligned_cols=72  Identities=19%  Similarity=0.298  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEee--ccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~--~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |++|+.+.+|++++++|++++||.+||++|++++|||+++|+|++  .|+ |+|+.+|++|+|..++++|++++.
T Consensus         9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred             eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence            788999999999999999999999999999999999999999986  566 999999999999999999998864

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.52  E-value=2e-14  Score=112.40  Aligned_cols=73  Identities=22%  Similarity=0.448  Sum_probs=68.7

Q ss_pred             CceeeEEEcCCCCEEEE-EecCCccHHHHHHHHhhhcCCCCCCeEEE---EcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          379 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~l~---~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      ..|+|+|+. .|+++.+ +|++++||.+||++|++++|+|+++|+|+   |+|+.|+|+.+|++|||++|++|+|...
T Consensus         6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~   82 (90)
T 1v5t_A            6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred             ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence            468999996 7899999 99999999999999999999999999999   9999999999999999999999998753

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=4.7e-14  Score=112.54  Aligned_cols=73  Identities=16%  Similarity=0.294  Sum_probs=68.3

Q ss_pred             ceeeEEE-cCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          380 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       380 ~~~i~v~-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      .+.|.|+ ...|+.+++.++++.||.+||+.++...++|++.|+|+|+|+.|.|+.||++|||++|.||||+.+
T Consensus        15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~   88 (118)
T 2daf_A           15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIF   88 (118)
T ss_dssp             CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEE
T ss_pred             cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEe
Confidence            4566766 667889999999999999999999999999999999999999999999999999999999999987

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.1e-14  Score=113.08  Aligned_cols=69  Identities=23%  Similarity=0.305  Sum_probs=64.4

Q ss_pred             CeEEEEcCCCcEE--EE-EecccccHHHHHHHHhh-hhCCCCccceEeec--cEEccCCCcccccccccccceeE
Q 012736            1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL   69 (457)
Q Consensus         1 ~~i~~~~~~g~~~--~~-~v~~~dtv~~ik~ki~~-~~~ip~~~q~l~~~--g~~L~~~~tl~~y~i~~~sti~l   69 (457)
                      |+|+|++..|+.+  ++ +|+|++||.+||++|++ +.|+|+++|+|+|.  |+.|+|++||++|+|.+++++|+
T Consensus        11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            8999999998775  58 99999999999999999 58999999999987  99999999999999999999876

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.51  E-value=2.3e-14  Score=117.49  Aligned_cols=76  Identities=29%  Similarity=0.577  Sum_probs=70.4

Q ss_pred             CeEEEEcC----------CCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736            1 MQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (457)
Q Consensus         1 ~~i~~~~~----------~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~   70 (457)
                      ++|.|+.+          +|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++
T Consensus        26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv  105 (115)
T 1we7_A           26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA  105 (115)
T ss_dssp             EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred             EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence            35677765          48999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCc
Q 012736           71 LRLRGG   76 (457)
Q Consensus        71 ~~~~~~   76 (457)
                      ++++++
T Consensus       106 ~rl~GG  111 (115)
T 1we7_A          106 LKERSG  111 (115)
T ss_dssp             ECCCSC
T ss_pred             EEcCCC
Confidence            988765

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.50  E-value=4.8e-14  Score=113.98  Aligned_cols=76  Identities=28%  Similarity=0.393  Sum_probs=70.0

Q ss_pred             CceeeEEEcCCC---CEEEEEecC---------CccHHHHHHHHhhhc--CCCCCC-eEEEEcCeecCCCCcccccCCCC
Q 012736          379 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK  443 (457)
Q Consensus       379 ~~~~i~v~~~~g---~~~~l~v~~---------~~tV~~lK~~i~~~~--gip~~~-q~l~~~g~~L~d~~tL~~~~i~~  443 (457)
                      ..|+|+|+..++   +.+.+++++         ++||.+||++|++.+  |+|+++ |+|+|+|+.|+|+.+|++|||++
T Consensus        11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~   90 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP   90 (107)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred             CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence            458999999988   789999554         499999999999999  999999 99999999999999999999999


Q ss_pred             CCEEEEEEecC
Q 012736          444 ESTLHLVLRLR  454 (457)
Q Consensus       444 ~~~i~l~~r~~  454 (457)
                      |++|+|+.|..
T Consensus        91 g~~i~lv~~~~  101 (107)
T 1x1m_A           91 GSTVHVLRKSW  101 (107)
T ss_dssp             TCEEEEEESSC
T ss_pred             CCEEEEEeCCC
Confidence            99999998764

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.50  E-value=2.8e-14  Score=111.61  Aligned_cols=72  Identities=21%  Similarity=0.412  Sum_probs=68.5

Q ss_pred             CeEEEEcCCCcEEEE-EecccccHHHHHHHHhhhhCCCCccceEe---eccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~-~v~~~dtv~~ik~ki~~~~~ip~~~q~l~---~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|+. +|+++++ +|.+++||.+||++|+++.|+|+++|+|+   |.|+.|+|+.+|++|+|.++++++|+...
T Consensus         8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~   83 (90)
T 1v5t_A            8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence            7899996 8999999 99999999999999999999999999999   99999999999999999999999997653

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.49  E-value=3.2e-14  Score=112.47  Aligned_cols=72  Identities=18%  Similarity=0.326  Sum_probs=66.8

Q ss_pred             CceeeEEEcCCCCEE-EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          379 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      ..|+|+|+. .|+++ .++|++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|||++|++|+|...
T Consensus         6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~   78 (96)
T 1wgg_A            6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred             cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence            458899995 68899 6999999999999999999999999999999999999999 999999999999998653

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.49  E-value=3.4e-14  Score=112.47  Aligned_cols=71  Identities=25%  Similarity=0.364  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCC-CcccccccccccceeEEEEec
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~~~~~   74 (457)
                      |+|+|++.+|+++.++|.+++||.+||++|+++.   +++|+|+|+|+.|+|+ ++|++|+|.+++++|++++.+
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~   79 (95)
T 1wia_A            8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence            7999999999999999999999999999999998   8899999999999999 999999999999999988654

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=2.5e-14  Score=113.05  Aligned_cols=74  Identities=19%  Similarity=0.275  Sum_probs=68.2

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~d~~tL~~~~i~~~~~i~l~~r~~  454 (457)
                      .|.+++....|++++++|++++||++||++|++++||||++|+|+|  .|+ |+|+.+|++|+|++|++|+|+++-.
T Consensus         8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~   83 (100)
T 2dzm_A            8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL   83 (100)
T ss_dssp             CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred             ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence            5888888889999999999999999999999999999999999987  566 9999999999999999999988743

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.49  E-value=5e-14  Score=108.87  Aligned_cols=70  Identities=29%  Similarity=0.452  Sum_probs=66.7

Q ss_pred             EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      +++++.+|++++++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+
T Consensus        14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence            5788899999999999999999999999999999999999999999999999999999999999998754

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.49  E-value=1.3e-13  Score=107.15  Aligned_cols=80  Identities=16%  Similarity=0.379  Sum_probs=76.5

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      +..|+|.|++.+|+.+.++|.+++++..|+...+++.|+|+++++|+|+|+.|.++.|+++|++++|++|++..+++||+
T Consensus         3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~   82 (91)
T 2io0_B            3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV   82 (91)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999994

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.48  E-value=4.9e-14  Score=111.42  Aligned_cols=71  Identities=17%  Similarity=0.292  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCcEE-EEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|+. +|+++ .++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.++++++|+...
T Consensus         8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~   79 (96)
T 1wgg_A            8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred             EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence            7899995 79999 5999999999999999999999999999999999999999 9999999999999997654

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.47  E-value=9.9e-14  Score=109.08  Aligned_cols=74  Identities=24%  Similarity=0.453  Sum_probs=68.0

Q ss_pred             CceeeEEEcCCCCEEEEEecCC-----ccHHHHHHHHhhhcCCCCCCeEEEEcCeecCC-CCcccccCCCCCCEEEEEEe
Q 012736          379 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~-----~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d-~~tL~~~~i~~~~~i~l~~r  452 (457)
                      ..|+|+|+. .|+.+.++|+++     +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|||++|++|+|..+
T Consensus         6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~   84 (92)
T 1wxv_A            6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   84 (92)
T ss_dssp             SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence            468999998 588999999995     99999999999999999999999999999998 56899999999999999875


Q ss_pred             c
Q 012736          453 L  453 (457)
Q Consensus       453 ~  453 (457)
                      .
T Consensus        85 ~   85 (92)
T 1wxv_A           85 K   85 (92)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.47  E-value=1.4e-13  Score=108.08  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=63.5

Q ss_pred             CceeeEEEcCCC--CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc--Ce---ec-CCCCcccccCCCCCCEEEEE
Q 012736          379 GGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       379 ~~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~--g~---~L-~d~~tL~~~~i~~~~~i~l~  450 (457)
                      ..+.|+|+...+  +.+++++++++||++||++|+.++||||++|+|+|.  |+   .| +|+.+|++|||++|++|+|+
T Consensus        14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv   93 (95)
T 2kjr_A           14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV   93 (95)
T ss_dssp             CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred             CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence            446778876655  489999999999999999999999999999999997  45   55 89999999999999999986

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.47  E-value=9.7e-14  Score=131.48  Aligned_cols=77  Identities=94%  Similarity=1.277  Sum_probs=72.4

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  454 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~  454 (457)
                      ...|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|+|
T Consensus       231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr  307 (307)
T 3ai5_A          231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  307 (307)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999986

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.47  E-value=8.8e-14  Score=109.29  Aligned_cols=70  Identities=14%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             eEEEEcCCC--cEEEEEecccccHHHHHHHHhhhhCCCCccceEeec--cE---Ec-cCCCcccccccccccceeEEE
Q 012736            2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLVL   71 (457)
Q Consensus         2 ~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~--g~---~L-~~~~tl~~y~i~~~sti~l~~   71 (457)
                      .|+|+..++  ++++++|.+++||.+||+||++++|+|+++|+|+|.  |+   +| +|+++|++|+|.+++++|++-
T Consensus        17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD   94 (95)
T 2kjr_A           17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD   94 (95)
T ss_dssp             EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred             EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence            578887766  489999999999999999999999999999999998  45   45 899999999999999999863

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=4.5e-14  Score=109.54  Aligned_cols=70  Identities=23%  Similarity=0.294  Sum_probs=64.6

Q ss_pred             ceeeEEEcCCCCEE--EE-EecCCccHHHHHHHHhh-hcCCCCCCeEEEEc--CeecCCCCcccccCCCCCCEEEE
Q 012736          380 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL  449 (457)
Q Consensus       380 ~~~i~v~~~~g~~~--~l-~v~~~~tV~~lK~~i~~-~~gip~~~q~l~~~--g~~L~d~~tL~~~~i~~~~~i~l  449 (457)
                      .|+|+|++..|+.+  .+ +|+|++||++||++|++ +.|+||++|+|+|.  |+.|+|+.||++|||++|++|++
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            58999999988765  58 99999999999999999 58999999999987  99999999999999999999876

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.47  E-value=6e-14  Score=113.42  Aligned_cols=73  Identities=29%  Similarity=0.407  Sum_probs=68.3

Q ss_pred             CeEEEEcCCC---cEEEEEe--------cc-cccHHHHHHHHhhhh--CCCCcc-ceEeeccEEccCCCccccccccccc
Q 012736            1 MQIFVKTLTG---KTITLEV--------ES-SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES   65 (457)
Q Consensus         1 ~~i~~~~~~g---~~~~~~v--------~~-~dtv~~ik~ki~~~~--~ip~~~-q~l~~~g~~L~~~~tl~~y~i~~~s   65 (457)
                      |+|+|++.+|   +++++++        .+ ++||.+||++|+++.  |+|++. |+|+|.|+.|+|+++|++|+|.+++
T Consensus        13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~   92 (107)
T 1x1m_A           13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS   92 (107)
T ss_dssp             CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred             eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence            7899999999   8999995        45 499999999999999  999999 9999999999999999999999999


Q ss_pred             ceeEEEEe
Q 012736           66 TLHLVLRL   73 (457)
Q Consensus        66 ti~l~~~~   73 (457)
                      ++|++.+.
T Consensus        93 ~i~lv~~~  100 (107)
T 1x1m_A           93 TVHVLRKS  100 (107)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEeCC
Confidence            99998864

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=110.48  Aligned_cols=79  Identities=15%  Similarity=0.238  Sum_probs=71.6

Q ss_pred             cEEEEEE-ccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEeeccee
Q 012736           76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ  154 (457)
Q Consensus        76 ~~~i~vk-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~~~  154 (457)
                      .+.|.|+ .++++.+.++++++.||.+||++++...++|+++|+|+|+||.|.|+.||++|||++|.+|||+.+......
T Consensus        15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~   94 (118)
T 2daf_A           15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDL   94 (118)
T ss_dssp             CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTT
T ss_pred             cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCcc
Confidence            4667776 667889999999999999999999999999999999999999999999999999999999999998755433

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.45  E-value=1.4e-13  Score=106.02  Aligned_cols=65  Identities=18%  Similarity=0.286  Sum_probs=59.5

Q ss_pred             CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE-------cCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-------~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      ...+.++..+++++||++||++|+.++|+||++|+|+|       .|+.|+|+++|++|||++|++|||+-+
T Consensus        12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A           12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence            44567789999999999999999999999999999997       488999999999999999999999753

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.45  E-value=9e-14  Score=107.18  Aligned_cols=70  Identities=17%  Similarity=0.274  Sum_probs=62.2

Q ss_pred             EEEEc--CCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEee-------ccEEccCCCcccccccccccceeEEEE
Q 012736            3 IFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         3 i~~~~--~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~-------~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      |.|..  ..++.+...+++++||.+||+||+.++|+|+++|+|+|       .|+.|+|+++|.+|+|.+++++|++-.
T Consensus         5 v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A            5 VSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             EEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             EEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence            44443  44567789999999999999999999999999999996       589999999999999999999999864

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.43  E-value=7.9e-14  Score=110.10  Aligned_cols=72  Identities=19%  Similarity=0.323  Sum_probs=65.6

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      ..|+|+|+ ..|+++.++|++++||.+||++|++.+|+|+++|+|+|.|+.|+ +.+|++|||++|++|+|+..
T Consensus        16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~   87 (95)
T 1v86_A           16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred             ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence            35788998 46889999999999999999999999999999999999999994 55999999999999998754

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.43  E-value=4.8e-13  Score=104.79  Aligned_cols=79  Identities=16%  Similarity=0.384  Sum_probs=73.3

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...|+|.|++.+|+.+.++|.+++++..|+..++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.++++||
T Consensus        15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG   93 (93)
T 2d07_B           15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   93 (93)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence            3568899999999999999999999999999999999999999999999999999999999999999999999999998

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.42  E-value=2.3e-13  Score=128.96  Aligned_cols=74  Identities=96%  Similarity=1.299  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      |+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+++++
T Consensus       234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr  307 (307)
T 3ai5_A          234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  307 (307)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999998753

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.41  E-value=3.4e-13  Score=106.00  Aligned_cols=72  Identities=24%  Similarity=0.433  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCcEEEEEeccc-----ccHHHHHHHHhhhhCCCCccceEeeccEEccC-CCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~-----dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~-~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++ .|++++++|.++     +||.+||++|+++.|+|+++|+|+|.|+.|.| +.+|++|+|.+++++|++.+.
T Consensus         8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~   85 (92)
T 1wxv_A            8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   85 (92)
T ss_dssp             EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence            6899999 589999999995     99999999999999999999999999999988 568999999999999998754

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.41  E-value=4.4e-13  Score=105.56  Aligned_cols=72  Identities=15%  Similarity=0.207  Sum_probs=62.1

Q ss_pred             ceeeEEEcCCC--CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCe---e----cCCCCcccccCCCCCCEEEEE
Q 012736          380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       380 ~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~---~----L~d~~tL~~~~i~~~~~i~l~  450 (457)
                      .+.++|.....  +.+++++++++||++||++|+.++||||++|+|+|.|+   .    ++|+.+|++|||++|++|+|+
T Consensus        14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv   93 (97)
T 2kj6_A           14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII   93 (97)
T ss_dssp             CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred             eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence            45667765433  47899999999999999999999999999999999883   3    489999999999999999986


Q ss_pred             E
Q 012736          451 L  451 (457)
Q Consensus       451 ~  451 (457)
                      -
T Consensus        94 d   94 (97)
T 2kj6_A           94 D   94 (97)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.40  E-value=3.2e-13  Score=131.75  Aligned_cols=78  Identities=31%  Similarity=0.572  Sum_probs=74.3

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhh---hcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEE-EEEEecC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR  454 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~---~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i-~l~~r~~  454 (457)
                      ..|+|+|++.+|+++.++|++++||.+||.+|++   ++|+|+++|+|+|+|+.|+|+++|++|||++|++| +++.|.+
T Consensus         6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~   85 (368)
T 1oqy_A            6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK   85 (368)
T ss_dssp             CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence            5799999999999999999999999999999999   67899999999999999999999999999999998 8999988


Q ss_pred             CC
Q 012736          455 GG  456 (457)
Q Consensus       455 GG  456 (457)
                      ||
T Consensus        86 ~~   87 (368)
T 1oqy_A           86 AG   87 (368)
T ss_dssp             SS
T ss_pred             CC
Confidence            86

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.39  E-value=1.9e-13  Score=107.92  Aligned_cols=70  Identities=21%  Similarity=0.378  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      |+|+|+ .+|+++.++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+| .+|++|+|.+++++||+..
T Consensus        18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~   87 (95)
T 1v86_A           18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence            678898 579999999999999999999999999999999999999999954 5999999999999999754

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.39  E-value=7.2e-13  Score=105.54  Aligned_cols=79  Identities=15%  Similarity=0.340  Sum_probs=76.3

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      ..|+|.|++.+|+.+.++|.+++++..|+..++++.|+|++.++|+|+|+.|.++.|+++|++++|++|+++.+++||.
T Consensus        23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~  101 (104)
T 1wz0_A           23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP  101 (104)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred             CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            5688999999999999999999999999999999999999999999999999999999999999999999999999994

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.38  E-value=4.4e-13  Score=105.57  Aligned_cols=70  Identities=16%  Similarity=0.203  Sum_probs=62.0

Q ss_pred             eEEEEcCCC--cEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccE---E----ccCCCcccccccccccceeEEE
Q 012736            2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL   71 (457)
Q Consensus         2 ~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~---~----L~~~~tl~~y~i~~~sti~l~~   71 (457)
                      .++|...+.  ++++++|++++||.+||+||++++|+|+++|+|+|+|+   .    ++|+++|.+|+|.++++||++-
T Consensus        16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd   94 (97)
T 2kj6_A           16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID   94 (97)
T ss_dssp             EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred             EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence            467776544  58999999999999999999999999999999999983   3    4889999999999999999975

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.38  E-value=7.6e-13  Score=103.71  Aligned_cols=76  Identities=17%  Similarity=0.403  Sum_probs=73.3

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|.|++.+|+.+.+.|.+++++..|+++++++.|+|+++|+|+|+|++|.++.|+++|+++++++||++++.+++
T Consensus         8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG   83 (94)
T 2io1_B            8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   83 (94)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred             EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999987765

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.37  E-value=1.4e-12  Score=103.77  Aligned_cols=77  Identities=13%  Similarity=0.320  Sum_probs=71.9

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..|+|.|++ +|+...++|.+++++..|+...+++.|+++++++|+|+|+.|.++.|.++|++++|++|++.++++||
T Consensus        30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG  106 (106)
T 2eke_C           30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  106 (106)
T ss_dssp             SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence            458899999 99999999999999999999999999999999999999999999999999999999999999999998

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.36  E-value=6.4e-13  Score=129.64  Aligned_cols=75  Identities=31%  Similarity=0.561  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhh---hhCCCCccceEeeccEEccCCCcccccccccccce-eEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~---~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti-~l~~~~~~   75 (457)
                      |+|+|++++|++++++|.+++||.+||++|++   +.|+|+++|+|+|.|+.|+|+++|.+|+|.++++| |++.+.++
T Consensus         8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~   86 (368)
T 1oqy_A            8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA   86 (368)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred             EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCC
Confidence            89999999999999999999999999999999   67899999999999999999999999999999998 77766554

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.35  E-value=1.6e-12  Score=102.60  Aligned_cols=71  Identities=20%  Similarity=0.279  Sum_probs=61.8

Q ss_pred             eeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC---ee----cCCCCcccccCCCCCCEEEEEE
Q 012736          381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g---~~----L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      +.|+|+..... .++++|++++||++||++|+.++|+|+++|+|+|.|   +.    ++|+.+|++|||++|++|+|.-
T Consensus         8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            56777765442 689999999999999999999999999999999986   43    4899999999999999999864

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.35  E-value=7.2e-13  Score=106.94  Aligned_cols=72  Identities=22%  Similarity=0.303  Sum_probs=65.8

Q ss_pred             ceeeEEEcCCCCEEEEEec-CCccHHHHHHHHhhhcCCCCCCeEEEEcCe-----------e----cCCCCcccccCCCC
Q 012736          380 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK  443 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~l~~~g~-----------~----L~d~~tL~~~~i~~  443 (457)
                      .|.|+|++.+|+. .++|+ +++||.+||++|++++|+|+++|+|+|.|+           .    ++|+.+|++|||++
T Consensus         7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~   85 (107)
T 1wf9_A            7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH   85 (107)
T ss_dssp             CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred             eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence            4899999999964 79999 999999999999999999999999999988           4    57889999999999


Q ss_pred             CCEEEEEEe
Q 012736          444 ESTLHLVLR  452 (457)
Q Consensus       444 ~~~i~l~~r  452 (457)
                      |++|+|...
T Consensus        86 G~~L~l~~~   94 (107)
T 1wf9_A           86 GSMVYLAYE   94 (107)
T ss_dssp             TCEEECCCS
T ss_pred             CCEEEEEeC
Confidence            999998754

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.33  E-value=9e-13  Score=106.36  Aligned_cols=71  Identities=21%  Similarity=0.276  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCcEEEEEec-ccccHHHHHHHHhhhhCCCCccceEeeccE-----------E----ccCCCcccccccccc
Q 012736            1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE   64 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~-~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~-----------~----L~~~~tl~~y~i~~~   64 (457)
                      |+|+|++.+|+. .++|+ +++||.+||++|+++.|+|+++|+|+|+|+           .    ++|+++|++|+|.++
T Consensus         8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G   86 (107)
T 1wf9_A            8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG   86 (107)
T ss_dssp             EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred             EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence            789999999976 79999 999999999999999999999999999988           4    588999999999999


Q ss_pred             cceeEEEE
Q 012736           65 STLHLVLR   72 (457)
Q Consensus        65 sti~l~~~   72 (457)
                      +++||+..
T Consensus        87 ~~L~l~~~   94 (107)
T 1wf9_A           87 SMVYLAYE   94 (107)
T ss_dssp             CEEECCCS
T ss_pred             CEEEEEeC
Confidence            99998754

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.33  E-value=1.4e-12  Score=104.70  Aligned_cols=79  Identities=15%  Similarity=0.388  Sum_probs=76.3

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      +..|+|.|++.+|+.+.++|.+++++..|+...+++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.++++||
T Consensus        24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg  102 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG  102 (110)
T ss_dssp             CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence            3568999999999999999999999999999999999999999999999999999999999999999999999999999

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.29  E-value=1.1e-11  Score=92.24  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=67.9

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~  450 (457)
                      |+|.|++.+|+...++|.+++++..|+.+.+++.|+|+++++++|+|+.|.++.|+++|++++|++|++.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            6889999999999999999999999999999999999999999999999999999999999999999986

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.28  E-value=4.7e-12  Score=99.89  Aligned_cols=70  Identities=20%  Similarity=0.275  Sum_probs=61.4

Q ss_pred             eEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeecc---EE----ccCCCcccccccccccceeEEE
Q 012736            2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL   71 (457)
Q Consensus         2 ~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g---~~----L~~~~tl~~y~i~~~sti~l~~   71 (457)
                      .|+|+..++. .++++|.+++||.+||++|++++|+|+++|+|+|.|   +.    ++|+++|.+|+|.+++++|++-
T Consensus         9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            4567765443 799999999999999999999999999999999987   43    5899999999999999999865

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.27  E-value=1.1e-11  Score=96.33  Aligned_cols=76  Identities=17%  Similarity=0.403  Sum_probs=72.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|+++|++.++++|++++...++
T Consensus         6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg   81 (91)
T 2io0_B            6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   81 (91)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999887654

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.26  E-value=1.2e-11  Score=102.08  Aligned_cols=72  Identities=15%  Similarity=0.266  Sum_probs=62.8

Q ss_pred             ceeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC---e---ec-CCCCcccccCCCCCCEEEEEE
Q 012736          380 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---QL-EDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       380 ~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g---~---~L-~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      .+.|+|+...+. .+++++++++||++||.+|+..+||||++|+|+|.|   +   .| +|+.+|++|||++|++|||+-
T Consensus         6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd   85 (122)
T 1t0y_A            6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD   85 (122)
T ss_dssp             EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred             EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence            467777765442 689999999999999999999999999999999987   4   34 788999999999999999875

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.24  E-value=8.3e-12  Score=96.57  Aligned_cols=71  Identities=24%  Similarity=0.343  Sum_probs=63.4

Q ss_pred             eeeEEEcCCCCEEEEE-ecCCccHHHHHHHHhhhcCCCCCCeEEEEc--CeecC---CCCcccccCCCCCCEEEEEEe
Q 012736          381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~--g~~L~---d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      |+|+|++.+|+ +.++ +++++||++||..|++++|+|++.|+|+|+  ++.|+   |+.+|++|||.+|++|+|.-.
T Consensus         1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            78999999996 4577 999999999999999999999999999997  47874   678999999999999998643

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.23  E-value=4.2e-11  Score=90.75  Aligned_cols=73  Identities=10%  Similarity=0.254  Sum_probs=69.4

Q ss_pred             cCceeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012736          378 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       378 ~~~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~  450 (457)
                      +..|+|.|++.+|+ .+.++|.+++++..|+...+++.|+++++++|+|+|+.|.++.|+++|++++|++|++.
T Consensus         5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            35689999999996 89999999999999999999999999999999999999999999999999999999985

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.22  E-value=2.3e-11  Score=90.59  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~   70 (457)
                      |+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|++.++|+|+|++|.++.|+++|++.++++|++.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            6899999999999999999999999999999999999999999999999999999999999999999985

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.22  E-value=1.9e-11  Score=100.99  Aligned_cols=71  Identities=14%  Similarity=0.252  Sum_probs=62.8

Q ss_pred             eEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeecc---E---E-ccCCCcccccccccccceeEEEE
Q 012736            2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         2 ~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g---~---~-L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      .|+|+..++. .+++++.+++||.+||.+|+++.|+|+++|+|+|.|   +   + ++|+++|.+|+|.++++||++..
T Consensus         8 ~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~   86 (122)
T 1t0y_A            8 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   86 (122)
T ss_dssp             EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence            5677776553 789999999999999999999999999999999987   3   3 47899999999999999999873

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.20  E-value=3.7e-11  Score=94.01  Aligned_cols=75  Identities=16%  Similarity=0.379  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|.|++.+|+.+.+.|.+++++..|+++++++.|+|++.++|+|+|++|.++.|+++|++.++++|+++++..+
T Consensus        18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G   92 (93)
T 2d07_B           18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG   92 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred             EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999987665

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.16  E-value=2.7e-11  Score=93.63  Aligned_cols=70  Identities=24%  Similarity=0.377  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCcEEEEE-ecccccHHHHHHHHhhhhCCCCccceEeec--cEEcc---CCCcccccccccccceeEEE
Q 012736            1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL   71 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~-v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~--g~~L~---~~~tl~~y~i~~~sti~l~~   71 (457)
                      |+|+|++.+|+.. ++ +.+++||.+||++|+++.|+|+++|+|+|+  ++.|+   ++.+|++|+|.+++++|+.-
T Consensus         1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~   76 (86)
T 2kzr_A            1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE   76 (86)
T ss_dssp             CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred             CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence            8999999999754 77 999999999999999999999999999997  47774   67899999999999999854

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.15  E-value=4.7e-11  Score=95.02  Aligned_cols=76  Identities=16%  Similarity=0.376  Sum_probs=72.3

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |+|.|++.+|+.+.+.|.+++++..|+++++++.|+|++.++|+|+|++|.++.|+++|++.++++||++++..++
T Consensus        25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG  100 (104)
T 1wz0_A           25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG  100 (104)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999998876653

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.14  E-value=1.2e-10  Score=88.17  Aligned_cols=70  Identities=10%  Similarity=0.274  Sum_probs=67.3

Q ss_pred             CeEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~   70 (457)
                      |+|.|++.+|+ .+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|+++|++.++++|++.
T Consensus         8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            68999999996 99999999999999999999999999999999999999999999999999999999874

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.13  E-value=4.2e-11  Score=96.07  Aligned_cols=77  Identities=16%  Similarity=0.428  Sum_probs=73.3

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM   77 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~   77 (457)
                      |+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|+++|++.++++|++++...+++
T Consensus        27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~  103 (110)
T 2k8h_A           27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL  103 (110)
T ss_dssp             EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999887764

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.13  E-value=1.1e-10  Score=92.98  Aligned_cols=74  Identities=12%  Similarity=0.314  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|.|++ +|+.+.+.|.+++++..|+++.+++.|+|++.++|+|+|++|.++.|.++|++.++++|+++++..+
T Consensus        32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G  105 (106)
T 2eke_C           32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG  105 (106)
T ss_dssp             EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred             EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence            6899999 9999999999999999999999999999999999999999999999999999999999999987665

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.12  E-value=6.8e-11  Score=113.73  Aligned_cols=71  Identities=23%  Similarity=0.470  Sum_probs=65.3

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE---ecCeeccCCCcccccccccCceEEEEEE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR  376 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~---~~g~~L~d~~~l~~~~i~~~~~l~l~~~  376 (457)
                      ++|+|+ |+|+++++++++++||++||++|++++||||++|+|+   ++|+.|+|+.+|++|+|++|++++|+-+
T Consensus         6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs   79 (320)
T 3shq_A            6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS   79 (320)
T ss_dssp             EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence            578888 8999999999999999999999999999999999999   8899999999999999999999999843

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.07  E-value=1.3e-10  Score=111.83  Aligned_cols=77  Identities=21%  Similarity=0.424  Sum_probs=67.8

Q ss_pred             CcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEE---ecCccccccCcccccccccCCcceeEEEeec
Q 012736           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (457)
Q Consensus        75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~  151 (457)
                      ..|.|+|+ .+|+.+.++|++++||++||++|++++|+||++|+|+   |+|+.|+|+.+|++|+|++|++|+|+..+..
T Consensus         4 ~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~   82 (320)
T 3shq_A            4 KEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA   82 (320)
T ss_dssp             CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred             ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence            35788898 5899999999999999999999999999999999999   8999999999999999999999999876554


Q ss_pred             c
Q 012736          152 G  152 (457)
Q Consensus       152 ~  152 (457)
                      .
T Consensus        83 ~   83 (320)
T 3shq_A           83 D   83 (320)
T ss_dssp             -
T ss_pred             h
Confidence            3

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.05  E-value=7e-10  Score=87.72  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=61.6

Q ss_pred             ceeeEEEc---CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC-------eec-CCCCcccccCCCCCCEEE
Q 012736          380 GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLH  448 (457)
Q Consensus       380 ~~~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g-------~~L-~d~~tL~~~~i~~~~~i~  448 (457)
                      .+.|+|++   .+|+.+...+++++||++||.+|+..+|+|+..|+|.|.+       ..| +|+.+|++|||.+|++|+
T Consensus         9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~   88 (97)
T 1wjn_A            9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL   88 (97)
T ss_dssp             EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred             cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence            35566664   4677899999999999999999999999999999999873       235 577799999999999999


Q ss_pred             EEE
Q 012736          449 LVL  451 (457)
Q Consensus       449 l~~  451 (457)
                      |.-
T Consensus        89 V~d   91 (97)
T 1wjn_A           89 VRW   91 (97)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            875

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=99.02  E-value=1.6e-09  Score=86.90  Aligned_cols=77  Identities=17%  Similarity=0.385  Sum_probs=73.5

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G  455 (457)
                      ..++|.|++.+|+...++|.+++++..|+...+++.|++++.++++|+|+.|.++.|.+++++++|++|++..+..|
T Consensus        39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G  115 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG  115 (115)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred             CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999998876

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=98.94  E-value=1.3e-06  Score=89.76  Aligned_cols=345  Identities=12%  Similarity=0.186  Sum_probs=222.9

Q ss_pred             EEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEec-Ccc-------c-c----ccCcccccccccCCcceeEEEe------
Q 012736           89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQ-------L-E----DGRTLADYNIQKESTLHLVLRL------  149 (457)
Q Consensus        89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-g~~-------L-~----d~~tl~~y~i~~~s~i~l~~~~------  149 (457)
                      ..+.|..+.|+.+||+++++..|+|+++|||..- .+.       + +    .+.++.++. ..++.+.+-+..      
T Consensus        38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~~~  116 (530)
T 2ylm_A           38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPELA  116 (530)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHHHH
T ss_pred             ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccccC
Confidence            4678999999999999999999999999998622 111       1 1    122333321 123333333321      


Q ss_pred             -----------ecceeeeEeecc--CceEE----eeecCCchHHHHHHHHhhhhCCCCCceEEEEC------CeecC-CC
Q 012736          150 -----------RGGMQIFVKTLT--GKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DG  205 (457)
Q Consensus       150 -----------~~~~~i~v~~~~--g~~~~----~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------g~~L~-d~  205 (457)
                                 ...+.|++|..+  .+++.    +.|+..++|.++-..|.+..|+|++.-..+|.      -..|+ .+
T Consensus       117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~  196 (530)
T 2ylm_A          117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD  196 (530)
T ss_dssp             TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred             CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence                       113678888765  33443    56889999999999999999999987666654      24566 57


Q ss_pred             CCcccc--CcCcCcEEEEEEEec-C-----------------CeeEEEEc---cCCceEEEEeecCccHHHHHHHHhhhc
Q 012736          206 RTLADY--NIQKESTLHLVLRLR-G-----------------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKE  262 (457)
Q Consensus       206 ~tL~~y--~i~~~~~i~l~~~~~-~-----------------~~~i~v~~---~~g~~~~~~v~~~~tV~~lK~~I~~~~  262 (457)
                      .|+.+.  .+.+|+.|.+-.... .                 .+.|.++.   .+...+.++++...|-.+|.+.+.++.
T Consensus       197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l  276 (530)
T 2ylm_A          197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL  276 (530)
T ss_dssp             SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            899999  999999986554432 1                 12333332   346679999999999999999999999


Q ss_pred             CCCCCCeEEEeC----Ccc-----cCCCcccccccc----CCCCeEEEEEee---------cCceeeEEEecCC--cEEE
Q 012736          263 GIPPDQQRLIFA----GKQ-----LEDGRTLADYNI----QKESTLHLVLRL---------RGGMQIFVKTLTG--KTIT  318 (457)
Q Consensus       263 ~ip~~~q~L~~~----g~~-----L~d~~tl~~~~i----~~~~tl~l~~~~---------~~~~~i~i~~~~g--~~~~  318 (457)
                      +++|..-||.-.    |..     ...+.+|.+.=-    ...+.+++.. +         ...+.|+....+.  +.+.
T Consensus       277 ~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~Yev-L~ipl~ElE~~r~~kv~w~~~~~~~~~~~  355 (530)
T 2ylm_A          277 NTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQ-LKMKITDFENRRSFKCIWLNSQFREEEIT  355 (530)
T ss_dssp             TSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEE-CSSCHHHHHSBCCEEEEEECTTSCEEEEE
T ss_pred             CCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEE-CCCCHHHHhhCceEEEEEECCCCceEEEE
Confidence            999998887622    221     222345433211    1124454432 2         2223443332221  3677


Q ss_pred             EEeeCCCcHHHHHHHhhcccCCCC---CCceEE--ecCe---eccCCCcccccccccCceEEEEEEec--------Ccee
Q 012736          319 LEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------GGMQ  382 (457)
Q Consensus       319 l~v~~~~Tv~~lK~~I~~~~~ip~---~~q~l~--~~g~---~L~d~~~l~~~~i~~~~~l~l~~~~~--------~~~~  382 (457)
                      +.++.+.||.||-+.++.+.+++.   .+-++.  ++++   +++++..++.++=....++++..-..        ..+-
T Consensus       356 l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~l  435 (530)
T 2ylm_A          356 LYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEML  435 (530)
T ss_dssp             ECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEE
T ss_pred             EEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEE
Confidence            889999999999999999999974   334443  5554   46777777765432244444432111        1122


Q ss_pred             eEEEc-------CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCe---E--EEEcC--eecCCCCc
Q 012736          383 IFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ---R--LIFAG--KQLEDGRT  435 (457)
Q Consensus       383 i~v~~-------~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q---~--l~~~g--~~L~d~~t  435 (457)
                      |.|-.       .-|..+.+.|.++.|+.++|++|.+++|++...+   +  ++-.+  ..++|+..
T Consensus       436 i~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~  502 (530)
T 2ylm_A          436 VTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEY  502 (530)
T ss_dssp             EEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTC
T ss_pred             EEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccc
Confidence            33321       1266889999999999999999999999996533   3  33334  45777543

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.92  E-value=3e-09  Score=94.15  Aligned_cols=78  Identities=13%  Similarity=0.276  Sum_probs=73.5

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      .-++|.|+ .+|+...++|.+++++..|+...+++.|+|++++|++|+|++|.++.|.+++++++|++|++..+++||.
T Consensus        28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~  105 (200)
T 3pge_A           28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG  105 (200)
T ss_dssp             CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred             CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence            34778887 4889999999999999999999999999999999999999999999999999999999999999999994

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.91  E-value=2.1e-09  Score=92.68  Aligned_cols=78  Identities=12%  Similarity=0.287  Sum_probs=73.5

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      ..++|.|+ .+|....++|.+++++..|+...+++.|++++.++++|+|+.|.++.|.+++++++||+|++..+++||.
T Consensus        56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~  133 (207)
T 3tix_A           56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL  133 (207)
T ss_dssp             CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred             CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            44778887 4889999999999999999999999999999999999999999999999999999999999999999993

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.79  E-value=6.5e-10  Score=97.16  Aligned_cols=79  Identities=13%  Similarity=0.311  Sum_probs=1.5

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      +..|+|.| ..+|+...++|.+++++..|+...+++.|++++.+|+.|+|+.+.++.|.+++++++||+|++..+++||+
T Consensus        19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~   97 (227)
T 3v7o_A           19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL   97 (227)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCc
Confidence            45688888 77899999999999999999999999999999999999999999999999999999999999999999995

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.78  E-value=1.5e-08  Score=80.03  Aligned_cols=73  Identities=16%  Similarity=0.234  Sum_probs=61.7

Q ss_pred             cEEEEEEc---cCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCc-------cc-cccCcccccccccCCcce
Q 012736           76 GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QL-EDGRTLADYNIQKESTLH  144 (457)
Q Consensus        76 ~~~i~vk~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~-------~L-~d~~tl~~y~i~~~s~i~  144 (457)
                      .+.|+|+.   .+|+.+...++++.||++||.+|+..+|+|+..|+|.|.+.       .| +|.++|+.|++.+|++||
T Consensus         9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~   88 (97)
T 1wjn_A            9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL   88 (97)
T ss_dssp             EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred             cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence            35566654   46778899999999999999999999999999999998731       24 678999999999999999


Q ss_pred             eEEE
Q 012736          145 LVLR  148 (457)
Q Consensus       145 l~~~  148 (457)
                      +...
T Consensus        89 V~d~   92 (97)
T 1wjn_A           89 VRWS   92 (97)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9763

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=98.70  E-value=1.6e-05  Score=81.85  Aligned_cols=331  Identities=13%  Similarity=0.175  Sum_probs=214.4

Q ss_pred             cEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEE--------ccC-----CCcccccccccccceeEEEEe----
Q 012736           11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LED-----GRTLADYNIQKESTLHLVLRL----   73 (457)
Q Consensus        11 ~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~--------L~~-----~~tl~~y~i~~~sti~l~~~~----   73 (457)
                      ...++.|....|+.++|+.|.+..|+|+++|||+.-...        +.+     +.++.++. ...+.+++.+..    
T Consensus        36 ~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~  114 (530)
T 2ylm_A           36 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPE  114 (530)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHH
T ss_pred             CcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccc
Confidence            445789999999999999999999999999999863221        111     11222221 122234444321    


Q ss_pred             -------------cCcEEEEEEccC--CcEE----EEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecC------cccc-
Q 012736           74 -------------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLE-  127 (457)
Q Consensus        74 -------------~~~~~i~vk~~~--g~~~----~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g------~~L~-  127 (457)
                                   ...+-|++|..+  .+.+    .+.|+.+++|.++-..|.++.|+|++.-..+|.-      ..|+ 
T Consensus       115 ~~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~  194 (530)
T 2ylm_A          115 LAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQD  194 (530)
T ss_dssp             HHTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCC
T ss_pred             cCCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccc
Confidence                         124778888654  2332    3678999999999999999999999887776652      3466 


Q ss_pred             ccCccccc--ccccCCcceeEEEee------------------cceeeeEee---ccCceEEeeecCCchHHHHHHHHhh
Q 012736          128 DGRTLADY--NIQKESTLHLVLRLR------------------GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQD  184 (457)
Q Consensus       128 d~~tl~~y--~i~~~s~i~l~~~~~------------------~~~~i~v~~---~~g~~~~~~v~~~~tV~~lK~~i~~  184 (457)
                      .+.|+.+.  ++.+|+.|..-....                  ..+.|.++.   .+...+.++++...|-.++-++|.+
T Consensus       195 ~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~  274 (530)
T 2ylm_A          195 YDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQ  274 (530)
T ss_dssp             SSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHH
T ss_pred             ccccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence            57899999  999999887765432                  123444443   2356799999999999999999999


Q ss_pred             hhCCCCCceEEEEC----Ce---e--cCCCCCccccCc----CcCcEEEEEEEec---------CCeeEEEEccCC--ce
Q 012736          185 KEGIPPDQQRLIFA----GK---Q--LEDGRTLADYNI----QKESTLHLVLRLR---------GGMQIFVKTLTG--KT  240 (457)
Q Consensus       185 ~~gip~~~q~L~~~----g~---~--L~d~~tL~~y~i----~~~~~i~l~~~~~---------~~~~i~v~~~~g--~~  240 (457)
                      ..++.|+..||.-.    |+   .  ...+.+|.+.=.    .....+..- .++         ..+.|+......  ..
T Consensus       275 ~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~Ye-vL~ipl~ElE~~r~~kv~w~~~~~~~~~  353 (530)
T 2ylm_A          275 RLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQ-QLKMKITDFENRRSFKCIWLNSQFREEE  353 (530)
T ss_dssp             HHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEE-ECSSCHHHHHSBCCEEEEEECTTSCEEE
T ss_pred             HhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEE-ECCCCHHHHhhCceEEEEEECCCCceEE
Confidence            99999988877521    21   1  122344433211    111223221 111         123343333222  26


Q ss_pred             EEEEeecCccHHHHHHHHhhhcCCCC---CCeEEE--eCCc---ccCCCccccccccCCCCeEEEEEee--------cCc
Q 012736          241 ITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRL--------RGG  304 (457)
Q Consensus       241 ~~~~v~~~~tV~~lK~~I~~~~~ip~---~~q~L~--~~g~---~L~d~~tl~~~~i~~~~tl~l~~~~--------~~~  304 (457)
                      +.+-+..+.||++|-+.+.++.+++.   ...|+.  ++++   .+.++.++...+=....++++.--.        ...
T Consensus       354 ~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~  433 (530)
T 2ylm_A          354 ITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENE  433 (530)
T ss_dssp             EEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTE
T ss_pred             EEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCc
Confidence            66778899999999999999999873   445554  4554   3666777765432224444432211        111


Q ss_pred             eeeEEEec-------CCcEEEEEeeCCCcHHHHHHHhhcccCCCCC
Q 012736          305 MQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPD  343 (457)
Q Consensus       305 ~~i~i~~~-------~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~  343 (457)
                      +-|.|-..       -|..+.+.+.++.|+.++|++|++++||+..
T Consensus       434 ~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k  479 (530)
T 2ylm_A          434 MLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK  479 (530)
T ss_dssp             EEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred             EEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence            22333222       3678889999999999999999999999975

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.67  E-value=9.9e-08  Score=76.53  Aligned_cols=73  Identities=16%  Similarity=0.397  Sum_probs=68.5

Q ss_pred             CeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEe
Q 012736          228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  300 (457)
Q Consensus       228 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~  300 (457)
                      .+.|.|+..+|+.+.+.|.+++++..|+...+++.|+++.+++|+|.|+.+.++.|..++++.++++|+++..
T Consensus        40 ~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~  112 (115)
T 3kyd_D           40 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE  112 (115)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred             eEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence            3667788889999999999999999999999999999999999999999999999999999999999988764

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.61  E-value=3.1e-07  Score=66.72  Aligned_cols=69  Identities=16%  Similarity=0.320  Sum_probs=61.5

Q ss_pred             eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      +.++.....-+.+.|+++++|.+|.+.-+.+.|||++ ..+|.|+|..|.++.++++|++++|+.|.+.+
T Consensus        12 ~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           12 LLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            3444444445889999999999999999999999999 99999999999999999999999999999875

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.53  E-value=5.2e-08  Score=73.60  Aligned_cols=71  Identities=14%  Similarity=0.221  Sum_probs=61.0

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCee---c--CCCCcccccCCCCCCEEEEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~---L--~d~~tL~~~~i~~~~~i~l~  450 (457)
                      .+|.|.+++.+| ++.+++++++|+.+|+.+|++.++++++.|.+.++..+   |  .++.+|+++||+.|++|++.
T Consensus         3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            358899999988 67889999999999999999999999999888765544   3  47789999999999999874

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.49  E-value=7.1e-07  Score=78.92  Aligned_cols=99  Identities=11%  Similarity=0.255  Sum_probs=79.9

Q ss_pred             CCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc--
Q 012736          227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG--  304 (457)
Q Consensus       227 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~--  304 (457)
                      .-+.+.|+ .+|+.+.+.+++.+++..|+...+++.|+|++++||+|.|+.+.++.|..++++.+|++|+++..+.++  
T Consensus        28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~k  106 (200)
T 3pge_A           28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGG  106 (200)
T ss_dssp             CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC-
T ss_pred             CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCcC
Confidence            34667776 489999999999999999999999999999999999999999999999999999999999999887554  


Q ss_pred             --eeeEEEecCCcEEEEEeeCCCcH
Q 012736          305 --MQIFVKTLTGKTITLEVESSDTI  327 (457)
Q Consensus       305 --~~i~i~~~~g~~~~l~v~~~~Tv  327 (457)
                        +.+....-.| .-.+.+.++..+
T Consensus       107 d~v~Fs~~GD~G-~~~i~l~~~~~~  130 (200)
T 3pge_A          107 ETIKFVADGDIG-SGSVIIKPFVDM  130 (200)
T ss_dssp             CCEEEEEECSSC-EEEEEECCBCCS
T ss_pred             ceEEEEeeccCC-eEEEEEecCCCC
Confidence              3444443333 334455554433

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.40  E-value=5.3e-07  Score=77.81  Aligned_cols=76  Identities=12%  Similarity=0.291  Sum_probs=70.0

Q ss_pred             CeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc
Q 012736          228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  304 (457)
Q Consensus       228 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~  304 (457)
                      .+.|.|+ .+|..+.+.|++++++..|+...+++.|+|+.+++|+|+|+.+.++.|..++++.++|+|+++..+.++
T Consensus        57 ~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG  132 (207)
T 3tix_A           57 HINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG  132 (207)
T ss_dssp             EEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred             cEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            3566676 489999999999999999999999999999999999999999999999999999999999998877665

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.36  E-value=1.7e-06  Score=67.36  Aligned_cols=73  Identities=12%  Similarity=0.273  Sum_probs=67.6

Q ss_pred             cCceeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012736          378 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       378 ~~~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~  450 (457)
                      +..+.|.|+..+|+ ...+.|.+++++..|....+++.|++++..++.|+|..|.++.|.+++++++|++|.+.
T Consensus        23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            35577888888885 78999999999999999999999999999999999999999999999999999999875

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=98.33  E-value=6.4e-08  Score=93.00  Aligned_cols=79  Identities=13%  Similarity=0.320  Sum_probs=0.7

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      ...++|.|++ +|+...++|.+++++..|+...+++.|++++.+++.|+|+.+.++.|.+++++++|++|++..+++|||
T Consensus        19 ~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~   97 (360)
T 3ix6_A           19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM   97 (360)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence            3456778876 677889999999999999999999999999999999999999999999999999999999999999996

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.27  E-value=2e-06  Score=77.59  Aligned_cols=79  Identities=13%  Similarity=0.302  Sum_probs=73.6

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      ...+.|.|++ +|+...+++.+++++..|+...+++.|+|+++++++|+|+.+.++.|..+++++++++|++...+.||.
T Consensus        19 ~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~   97 (209)
T 3uf8_A           19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS   97 (209)
T ss_dssp             CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred             CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence            4557788887 777889999999999999999999999999999999999999999999999999999999999999983

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.21  E-value=4e-06  Score=64.40  Aligned_cols=55  Identities=18%  Similarity=0.227  Sum_probs=45.8

Q ss_pred             cCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccC--CCccccccc
Q 012736            7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNI   61 (457)
Q Consensus         7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~--~~tl~~y~i   61 (457)
                      ...+..+.+.|.+.+||..+|++|++++|||+.+|+|+|.|+.|.-  ++.-..|.-
T Consensus        20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~   76 (94)
T 4efo_A           20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK   76 (94)
T ss_dssp             TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred             cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence            3567899999999999999999999999999999999999988653  333444433

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.14  E-value=2.9e-07  Score=80.60  Aligned_cols=82  Identities=12%  Similarity=0.312  Sum_probs=1.2

Q ss_pred             EEecCcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEee
Q 012736           71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (457)
Q Consensus        71 ~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~  150 (457)
                      ..+...|+|.| ..+|+.+.+.|.+++++..|++...++.|++++.++++|+|+.+.++.|.+++++.+|++|++.....
T Consensus        16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~   94 (227)
T 3v7o_A           16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI   94 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence            34456788888 77899999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cce
Q 012736          151 GGM  153 (457)
Q Consensus       151 ~~~  153 (457)
                      ||.
T Consensus        95 GG~   97 (227)
T 3v7o_A           95 GGL   97 (227)
T ss_dssp             -CC
T ss_pred             CCc
Confidence            774

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.10  E-value=2.1e-05  Score=57.14  Aligned_cols=71  Identities=15%  Similarity=0.323  Sum_probs=63.9

Q ss_pred             eeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCC-ceEEEECCeecCCCCCccccCcCcCcEEEEEE
Q 012736          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (457)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~  223 (457)
                      +.+.++......+.+.+.++.+|.+|-+.-+.+.|||++ ..+|.|.|..|+.+.++++|.+.+++.|.+++
T Consensus        10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            345566666778999999999999999999999999999 89999999999999999999999999998764

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.09  E-value=2e-06  Score=64.79  Aligned_cols=71  Identities=14%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             CcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCcc---c--cccCcccccccccCCcceeE
Q 012736           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV  146 (457)
Q Consensus        75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~---L--~d~~tl~~y~i~~~s~i~l~  146 (457)
                      +.|.|.|++.+| .+.+++++++|+.+|+++|++..+++++.|.+.++...   |  .++.+++++|+++|+.|++.
T Consensus         3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            347788888887 66788999999999999999999999999888755433   3  47889999999999998874

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=98.03  E-value=2.5e-05  Score=59.63  Aligned_cols=72  Identities=14%  Similarity=0.276  Sum_probs=66.3

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      ..++|.|+. .|....+.+..++....|....+++.|++++..++.|+|..+.++.|.+++|+++|++|.+..
T Consensus        20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~   91 (95)
T 2l76_A           20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV   91 (95)
T ss_dssp             CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred             CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence            346778885 688899999999999999999999999999999999999999999999999999999998764

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.00  E-value=1.7e-05  Score=60.96  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=48.4

Q ss_pred             CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecC--CCCcccccCC-CCCCEEEEEE
Q 012736          388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNI-QKESTLHLVL  451 (457)
Q Consensus       388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~--d~~tL~~~~i-~~~~~i~l~~  451 (457)
                      ..++.+.+.+.+.+||..+|++|++.+|||+++|+|+|.|+.|.  ++..-..|-- ...+-|.|..
T Consensus        21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s   87 (94)
T 4efo_A           21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS   87 (94)
T ss_dssp             TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred             ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence            45778999999999999999999999999999999999998775  3333333322 2234444443

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.95  E-value=2.3e-05  Score=59.29  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=69.1

Q ss_pred             CCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEee
Q 012736          227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  301 (457)
Q Consensus       227 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~  301 (457)
                      ++|.|.|-..+|+..++.|.++.++.++-++.++++|++++++.|.|+++.++-+.+++.-|+.+++.|.|+...
T Consensus         8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s   82 (90)
T 2al3_A            8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS   82 (90)
T ss_dssp             --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred             CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence            467888888999999999999999999999999999999999999999999999999999999999999887654

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=97.92  E-value=0.00049  Score=67.67  Aligned_cols=134  Identities=24%  Similarity=0.353  Sum_probs=104.5

Q ss_pred             CceEEeeecCCchHHHHHHHHhhhhC----CCCCceEEEE------CCeecCCCCCccccCcCcCcEEEEEEEecCCeeE
Q 012736          162 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI  231 (457)
Q Consensus       162 g~~~~~~v~~~~tV~~lK~~i~~~~g----ip~~~q~L~~------~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~~~i  231 (457)
                      +.+-++.++++.||.++...|.++..    .+.++.-|.-      .|+-|++++||..|++.+++.+....++   +.+
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~---~~~   88 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ---RPL   88 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE---EEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce---eEE
Confidence            55667899999999999999988764    3566777765      3677999999999999999988776543   578


Q ss_pred             EEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEeCC---------cccCCCccccccccCCCCeEEEE
Q 012736          232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG---------KQLEDGRTLADYNIQKESTLHLV  298 (457)
Q Consensus       232 ~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~g---------~~L~d~~tl~~~~i~~~~tl~l~  298 (457)
                      .|..++|....+.++++.|+.++-..|+++.|+.... .-|.+..         .-|+..+++...+.....++++.
T Consensus        89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr  165 (371)
T 3ivf_A           89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR  165 (371)
T ss_dssp             EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred             EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence            8999999999999999999999999999999986544 4455532         12555677777666555566554

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.87  E-value=5.9e-05  Score=58.61  Aligned_cols=71  Identities=13%  Similarity=0.287  Sum_probs=64.4

Q ss_pred             CeeEEEEccCCc-eEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012736          228 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  298 (457)
Q Consensus       228 ~~~i~v~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~  298 (457)
                      .+.+.|+..+|. .+.+.|.+.+++..|....+++.|+++...+|+|.|+.+.++.|..+.++.++++|.+.
T Consensus        25 ~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           25 QLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             EEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             eEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            356667777884 89999999999999999999999999999999999999999999999999999998654

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=97.85  E-value=0.00076  Score=66.30  Aligned_cols=136  Identities=24%  Similarity=0.343  Sum_probs=107.1

Q ss_pred             CcEEEEEeeCCCcHHHHHHHhhcccC----CCCCCceEEe------cCeeccCCCcccccccccCceEEEEEEecCceee
Q 012736          314 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI  383 (457)
Q Consensus       314 g~~~~l~v~~~~Tv~~lK~~I~~~~~----ip~~~q~l~~------~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i  383 (457)
                      +-+-++.+++++||.|.-..|.++..    .+++.--|.|      +|.=|+++++|..|++.++..+....   ..+.+
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~---~~~~~   88 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK---KQRPL   88 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE---CEEEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC---ceeEE
Confidence            56677999999999999999988864    3455556777      33448889999999999999888875   46788


Q ss_pred             EEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEEEcC---------eecCCCCcccccCCCCCCEEEEEEe
Q 012736          384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~~g---------~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      .|..++|....+.|++++|+.++-..|+.+.|+... .+-|.+..         .-|+.++++.+.+.....++++..|
T Consensus        89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK  167 (371)
T 3ivf_A           89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK  167 (371)
T ss_dssp             EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence            999999999999999999999999999999998643 34555432         2445567788777776777766554

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.84  E-value=8.8e-05  Score=66.72  Aligned_cols=91  Identities=14%  Similarity=0.310  Sum_probs=76.7

Q ss_pred             cCCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCce
Q 012736          226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  305 (457)
Q Consensus       226 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~~  305 (457)
                      ...+.+.|+. .|+.+.+.+.+++.+..|+...+++.|+|+++++|.|.|+.+.++.|..+....++++|.+...+.++.
T Consensus        19 ~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~   97 (209)
T 3uf8_A           19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS   97 (209)
T ss_dssp             CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred             CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence            3445666766 778889999999999999999999999999999999999999999999999999999999988776665


Q ss_pred             eeEEEecCCcEEE
Q 012736          306 QIFVKTLTGKTIT  318 (457)
Q Consensus       306 ~i~i~~~~g~~~~  318 (457)
                      .+ +++.+|-.+.
T Consensus        98 t~-~~~~sGl~~~  109 (209)
T 3uf8_A           98 TV-VTTESGLKYE  109 (209)
T ss_dssp             CC-EECTTSCEEE
T ss_pred             cc-cCCCCceEEE
Confidence            43 4455554444

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.82  E-value=2.5e-06  Score=84.73  Aligned_cols=77  Identities=12%  Similarity=0.299  Sum_probs=0.0

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF  457 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~  457 (457)
                      .+.|.|++ +|....+++.+++++..|+...+++.|+++.+++++|+|+.|.++.|.+++++++|++|++...++||.
T Consensus        30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~  106 (389)
T 4da1_A           30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE  106 (389)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence            45667776 677788999999999999999999999999999999999999999999999999999999999999994

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.77  E-value=8.7e-05  Score=56.11  Aligned_cols=74  Identities=20%  Similarity=0.252  Sum_probs=68.7

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      ..|.+.|-..+++...++|.|++++.++-+..++++|+++++-.|.|+++.|+-+..+.-.|+-+|+.+.++..
T Consensus         8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~   81 (90)
T 2al3_A            8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   81 (90)
T ss_dssp             --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999998754

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.65  E-value=6.6e-05  Score=61.17  Aligned_cols=71  Identities=27%  Similarity=0.393  Sum_probs=60.5

Q ss_pred             eeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCC-------------------------------------CceEE
Q 012736          306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI  348 (457)
Q Consensus       306 ~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~-------------------------------------~q~l~  348 (457)
                      .+.|++++|...++.|+.+.||.+++..|+.+.||+..                                     +|+|-
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            58899999999999999999999999999999999855                                     33432


Q ss_pred             e--cCeeccCCCcccccccccCceEEEEEE
Q 012736          349 F--AGKQLEDGRTLADYNIQKESTLHLVLR  376 (457)
Q Consensus       349 ~--~g~~L~d~~~l~~~~i~~~~~l~l~~~  376 (457)
                      -  ..+-|+++++|.++||.+++++.|+.+
T Consensus        93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           93 TDDELNWLDHGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred             ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence            1  225689999999999999999998864

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.60  E-value=8.9e-06  Score=78.16  Aligned_cols=86  Identities=13%  Similarity=0.343  Sum_probs=2.9

Q ss_pred             EEecCcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEee
Q 012736           71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (457)
Q Consensus        71 ~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~  150 (457)
                      ..+...+.|.|+. +|+.+.+.|.++++...|++...++.|++++.+++.|+|+.+.++.|.+++++.+|++|++..+..
T Consensus        16 ~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~   94 (360)
T 3ix6_A           16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI   94 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence            3445567788876 678899999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cceeeeE
Q 012736          151 GGMQIFV  157 (457)
Q Consensus       151 ~~~~i~v  157 (457)
                      |||..+.
T Consensus        95 g~~~~Yl  101 (360)
T 3ix6_A           95 GGMRTYL  101 (360)
T ss_dssp             --CHHHH
T ss_pred             chHHHHH
Confidence            8876554

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.56  E-value=9.7e-05  Score=60.18  Aligned_cols=71  Identities=27%  Similarity=0.393  Sum_probs=58.6

Q ss_pred             eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-------------------------------------CeEEE
Q 012736          382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI  424 (457)
Q Consensus       382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-------------------------------------~q~l~  424 (457)
                      .+.|+.++|+..++.|+.+.+|.+++..|+.+.||+..                                     .|+|.
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            47889999999999999999999999999999999855                                     23331


Q ss_pred             E--cCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          425 F--AGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       425 ~--~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      .  ++.-|+++.||.++||.++++|.|..+
T Consensus        93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           93 TDDELNWLDHGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred             ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence            1  125567788999999999999887654

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.51  E-value=0.00043  Score=52.83  Aligned_cols=70  Identities=14%  Similarity=0.304  Sum_probs=64.1

Q ss_pred             eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012736          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  299 (457)
Q Consensus       229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~  299 (457)
                      +.+.|+ .+|..+.+.+..++..+.|....+++.|++++.-+|+|.|..+.++.|..+.++.++++|..+.
T Consensus        22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~   91 (95)
T 2l76_A           22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV   91 (95)
T ss_dssp             EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred             EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence            455566 4788999999999999999999999999999999999999999999999999999999997654

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.46  E-value=0.00033  Score=52.28  Aligned_cols=62  Identities=15%  Similarity=0.219  Sum_probs=53.9

Q ss_pred             CCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-----CeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012736          388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL  449 (457)
Q Consensus       388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-----~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l  449 (457)
                      ..|+++.+.++...||..|+..+.+.++++..     ..++.-.|..|.++++|++|+|.+||.|.+
T Consensus        14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A           14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            47899999999999999999999999988752     335555788999999999999999999875

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=97.04  E-value=0.003  Score=47.75  Aligned_cols=72  Identities=18%  Similarity=0.314  Sum_probs=61.3

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCcccccCCCCCCEEEEEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~  451 (457)
                      +...|-|+..+|+...-....++||.+|...|.. .+.++..+.|.  |-.+.|.   .+.||+++|+.+.++|.|.-
T Consensus         6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~   82 (84)
T 3qx1_A            6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   82 (84)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence            4467889999999888999999999999999998 67888888888  4467784   45799999999999998754

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.00  E-value=0.0001  Score=72.99  Aligned_cols=77  Identities=12%  Similarity=0.317  Sum_probs=0.0

Q ss_pred             eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCcee
Q 012736          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ  306 (457)
Q Consensus       229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~~~  306 (457)
                      +.+.|+. .|..+.+.+++.++...|+...+++.|+|+.+++|+|+|+.+.++.|..+.++.++++|.++..+.++..
T Consensus        31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n  107 (389)
T 4da1_A           31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN  107 (389)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence            4555655 6788889999999999999999999999999999999999999999999999999999998887755543

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=96.66  E-value=0.006  Score=45.39  Aligned_cols=62  Identities=15%  Similarity=0.219  Sum_probs=52.6

Q ss_pred             cCCceEEEEeecCccHHHHHHHHhhhcCCCCC-----CeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736          236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL  297 (457)
Q Consensus       236 ~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~-----~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l  297 (457)
                      ..++++.+.+...-||..|.+.+.+.++++..     +-+..-.+..|.++.+|++|+|.+||.|.+
T Consensus        14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A           14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            57899999999999999999999999997542     234445677899999999999999999853

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.65  E-value=0.0093  Score=44.98  Aligned_cols=70  Identities=19%  Similarity=0.360  Sum_probs=59.5

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL  375 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~~  375 (457)
                      ..|.|+..+|..+.-..+.++|+.+|..-|.. .+.++....|+  |..+.+   +.+.+|.++|+.+.++|.+..
T Consensus         8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~   82 (84)
T 3qx1_A            8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   82 (84)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence            36788999999999999999999999999998 56677777777  677777   567999999999999988864

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=96.01  E-value=0.016  Score=47.20  Aligned_cols=72  Identities=19%  Similarity=0.323  Sum_probs=60.9

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeec--CC-CCcccccCCCCCCEEEEEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L--~d-~~tL~~~~i~~~~~i~l~~  451 (457)
                      +...|-||.++|+...-.+..++||.+|...|... +.++..+.|.  |-.+.|  +| +.||.++|+.+..+|.|..
T Consensus        42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~  118 (124)
T 1wj4_A           42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence            45788999999999999999999999999999887 8888888887  457788  33 6799999999988877653

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=95.90  E-value=0.034  Score=44.12  Aligned_cols=74  Identities=16%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--C-CCcccccCCCCCCEEEEEEe
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~--d-~~tL~~~~i~~~~~i~l~~r  452 (457)
                      +...|-||.++|+...-....++||.+|...|....+.+...+.|.  |-.+.+.  | +.||.++|+.+..+|.+...
T Consensus        12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            3467889999999999999999999999999999988887778776  4566776  3 57999999999988887654

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=95.80  E-value=0.033  Score=44.16  Aligned_cols=72  Identities=15%  Similarity=0.228  Sum_probs=61.4

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeecc---CCCcccccccccCceEEEEEE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR  376 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~---d~~~l~~~~i~~~~~l~l~~~  376 (457)
                      ..|.|+..+|..+.-.++.++|+.+|..-|....+.+...-.|+  |..+.+.   .+.+|.+.|+.+..+|.+...
T Consensus        14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            46888999999999999999999999999999877776666676  7777775   478999999999988888754

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=95.76  E-value=0.1  Score=37.62  Aligned_cols=67  Identities=24%  Similarity=0.337  Sum_probs=54.2

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .|+|+|....+ ...++++...|+.+|...+    ++++....+..||..+..+.     -+++||.|.+.-..-||
T Consensus         4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG   70 (70)
T 1ryj_A            4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG   70 (70)
T ss_dssp             CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred             eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence            58888886654 3567888889999999886    56778888889999997665     57789999998888877

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=95.60  E-value=0.034  Score=45.14  Aligned_cols=70  Identities=19%  Similarity=0.336  Sum_probs=59.9

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL  375 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~~  375 (457)
                      ..|.|+..+|..+.-.++.++|+.+|..-|... +.++..-.|+  |..+.|   +.+.+|.+.|+.+..+|.+..
T Consensus        44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~  118 (124)
T 1wj4_A           44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence            468889999999999999999999999999887 7766666676  778888   458999999999988888874

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.21  E-value=0.029  Score=41.30  Aligned_cols=64  Identities=13%  Similarity=0.227  Sum_probs=55.5

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc---CeecCCCCcccccCCCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK  443 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~---g~~L~d~~tL~~~~i~~  443 (457)
                      ++.+.|.....+...+.|+|..++++|-..|+++-.+.|++-.|...   +.+|+=+++|.||||++
T Consensus        10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A           10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            45566667777788999999999999999999999999999998864   55788889999999986

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.10  E-value=0.11  Score=40.83  Aligned_cols=63  Identities=38%  Similarity=0.494  Sum_probs=46.3

Q ss_pred             CCEEEEEecCCccHHHHHHHHhhhc--CCC------CCCeEEEE----cCeecCCC-------------CcccccCCCCC
Q 012736          390 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGKQLEDG-------------RTLADYNIQKE  444 (457)
Q Consensus       390 g~~~~l~v~~~~tV~~lK~~i~~~~--gip------~~~q~l~~----~g~~L~d~-------------~tL~~~~i~~~  444 (457)
                      +..+.++|-..+||.++|++|-+..  |.|      ++...|-+    .|+.|.|.             .||+.|+|.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            4468888889999999999997764  454      34555665    25566652             48999999999


Q ss_pred             CEEEEEEe
Q 012736          445 STLHLVLR  452 (457)
Q Consensus       445 ~~i~l~~r  452 (457)
                      +++.++-|
T Consensus       103 atl~l~~~  110 (111)
T 4e71_A          103 ATLILSKV  110 (111)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEeC
Confidence            99988764

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=94.42  E-value=0.057  Score=42.46  Aligned_cols=64  Identities=34%  Similarity=0.402  Sum_probs=43.7

Q ss_pred             CCcEEEEEecccccHHHHHHHHhhh--hCCCCcc------ceEee----ccEEccCC-------------Cccccccccc
Q 012736            9 TGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGKQLEDG-------------RTLADYNIQK   63 (457)
Q Consensus         9 ~g~~~~~~v~~~dtv~~ik~ki~~~--~~ip~~~------q~l~~----~g~~L~~~-------------~tl~~y~i~~   63 (457)
                      ++..+++.|-..|||..+|+||-+.  .|.|.++      ..|-|    .|+.|.|.             +||++|+|.+
T Consensus        22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  101 (111)
T 4e71_A           22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD  101 (111)
T ss_dssp             CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred             CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence            3567888899999999999999653  5666553      33444    34556541             5899999999


Q ss_pred             ccceeEEEE
Q 012736           64 ESTLHLVLR   72 (457)
Q Consensus        64 ~sti~l~~~   72 (457)
                      ++++-++.+
T Consensus       102 gatl~l~~~  110 (111)
T 4e71_A          102 GATLILSKV  110 (111)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEeC
Confidence            999987653

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=94.21  E-value=0.16  Score=40.07  Aligned_cols=71  Identities=18%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--CCCcccccCCCCCCEEEEEE
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~--d~~tL~~~~i~~~~~i~l~~  451 (457)
                      ...|-||..+|+.+.-.+..++||.+|...|... +..+..+.|.  |-.+.|.  .+.||+++|+.+..+|.|.-
T Consensus        23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            4678889999998888999999999999999965 5566777776  4467776  46799999999999987754

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=93.96  E-value=0.11  Score=46.69  Aligned_cols=65  Identities=23%  Similarity=0.385  Sum_probs=53.2

Q ss_pred             EEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEE--E-c--CeecCC-CCcccccCCCCCCEEEEEEecCCC
Q 012736          392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-A--GKQLED-GRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~--~-~--g~~L~d-~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .++..++..+||.+|+..++...+||++ ..||-  + .  ...|+| ++||.++++.++..|.+-.|...|
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg  212 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG  212 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            4677889999999999999999999997 67764  2 2  235665 469999999999999999987665

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=93.92  E-value=0.41  Score=38.38  Aligned_cols=64  Identities=28%  Similarity=0.414  Sum_probs=48.2

Q ss_pred             CCCEEEEEecCCccHHHHHHHHhhhc--CCC------CCCeEEEE-c---Ce-ecCCC-------------CcccccCCC
Q 012736          389 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQ  442 (457)
Q Consensus       389 ~g~~~~l~v~~~~tV~~lK~~i~~~~--gip------~~~q~l~~-~---g~-~L~d~-------------~tL~~~~i~  442 (457)
                      .+..+.++|-..+||.++|++|-+..  |.|      ++...|-+ .   |+ .|.|.             .||+.|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            44568888889999999999997764  454      35666766 2   33 36542             589999999


Q ss_pred             CCCEEEEEEe
Q 012736          443 KESTLHLVLR  452 (457)
Q Consensus       443 ~~~~i~l~~r  452 (457)
                      +|+++.+..+
T Consensus        95 dgatv~l~~~  104 (127)
T 3h6n_A           95 EGASLAMSLI  104 (127)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCEEEEEEc
Confidence            9999999765

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=93.84  E-value=0.17  Score=40.03  Aligned_cols=71  Identities=18%  Similarity=0.228  Sum_probs=57.6

Q ss_pred             ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeecC--CCCCccccCcCcCcEEEEEE
Q 012736          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL  223 (457)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~--d~~tL~~y~i~~~~~i~l~~  223 (457)
                      ...|.|+.++|+.+.-....++||.+|...|... +.....+.|+  |-.+.+.  .+.||.+.|+.+..++.+..
T Consensus        23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            4678888999999998999999999999999865 5555667776  4577775  46899999999998886644

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=93.84  E-value=0.13  Score=37.49  Aligned_cols=66  Identities=14%  Similarity=0.350  Sum_probs=50.1

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|.|+........++++++.||++|-.    ..|+|++.-.+..||+.+..+.      +.+|+.|.+.--.-||
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~   66 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG   66 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence            6677776544556789999999998765    4799999988888999887665      2348999886665555

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=93.77  E-value=0.16  Score=45.99  Aligned_cols=65  Identities=20%  Similarity=0.305  Sum_probs=53.5

Q ss_pred             EEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEEE-c----CeecCC-CCcccccCCCCCCEEEEEEecCCC
Q 012736          392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~-~----g~~L~d-~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .++..++..+||.+|+..++...+||++ ..||-. .    ...|.| +.||.++++.++..|.+-.|..-|
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg  224 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG  224 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            3567789999999999999999999997 577754 3    336665 579999999999999999886554

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=93.68  E-value=0.17  Score=41.19  Aligned_cols=69  Identities=20%  Similarity=0.338  Sum_probs=55.8

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhc-CCCCCCeEEE--EcCeecCC-CCcccccCCCCCCEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL  447 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~-gip~~~q~l~--~~g~~L~d-~~tL~~~~i~~~~~i  447 (457)
                      +...|-|+..+|+...-.+..++||.+|...|.... +.+...+.|.  |-.+.|+| +.||.++|+.+..+|
T Consensus        51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            356788999999999999999999999999999863 4556677776  45778875 579999999875443

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=93.62  E-value=0.47  Score=34.82  Aligned_cols=58  Identities=19%  Similarity=0.374  Sum_probs=50.6

Q ss_pred             EEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012736          241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  298 (457)
Q Consensus       241 ~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~  298 (457)
                      +.-.++-..++..||..++.+.|++.+.+.+...+..|+++++|.+.|++-+..+.+.
T Consensus         5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin   62 (89)
T 2juo_A            5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS   62 (89)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred             hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence            3445666778999999999999999999999999988999999999999988887653

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=93.05  E-value=0.46  Score=38.10  Aligned_cols=67  Identities=25%  Similarity=0.402  Sum_probs=48.8

Q ss_pred             EcCCCcEEEEEecccccHHHHHHHHhhh--hCCCCc------cceEee----ccEE-ccC--------C-----Cccccc
Q 012736            6 KTLTGKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIF----AGKQ-LED--------G-----RTLADY   59 (457)
Q Consensus         6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~~--~~ip~~------~q~l~~----~g~~-L~~--------~-----~tl~~y   59 (457)
                      ...++..+++.|-..|||..+|+||-+.  .|.|.+      ...|-|    .|+. |.|        +     +||+.|
T Consensus        12 ~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY   91 (127)
T 3h6n_A           12 QGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHY   91 (127)
T ss_dssp             ETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTT
T ss_pred             cCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEecccccc
Confidence            3445677889999999999999999664  566653      344544    2332 544        1     589999


Q ss_pred             ccccccceeEEEE
Q 012736           60 NIQKESTLHLVLR   72 (457)
Q Consensus        60 ~i~~~sti~l~~~   72 (457)
                      +|.+++++-++.+
T Consensus        92 ~V~dgatv~l~~~  104 (127)
T 3h6n_A           92 KIPEGASLAMSLI  104 (127)
T ss_dssp             TCCTTCEEEEEEC
T ss_pred             CCCCCCEEEEEEc
Confidence            9999999988765

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=92.91  E-value=0.29  Score=39.82  Aligned_cols=65  Identities=32%  Similarity=0.512  Sum_probs=46.7

Q ss_pred             CcEEEEEecccccHHHHHHHHhhh--hCCCCcc------ceEee----ccEE-ccCC-------------Cccccccccc
Q 012736           10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGKQ-LEDG-------------RTLADYNIQK   63 (457)
Q Consensus        10 g~~~~~~v~~~dtv~~ik~ki~~~--~~ip~~~------q~l~~----~g~~-L~~~-------------~tl~~y~i~~   63 (457)
                      ...+++.|-..|||..+|+||-+.  -|+|.++      --|-|    .|+. |.|.             +||+.|+|.+
T Consensus        40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D  119 (138)
T 2r2o_A           40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD  119 (138)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred             CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence            367889999999999999999764  5676543      23333    2433 5542             4899999999


Q ss_pred             ccceeEEEEec
Q 012736           64 ESTLHLVLRLR   74 (457)
Q Consensus        64 ~sti~l~~~~~   74 (457)
                      ++++-++.+..
T Consensus       120 ga~l~l~~~~~  130 (138)
T 2r2o_A          120 GATVALVPCLT  130 (138)
T ss_dssp             TCEEEEEEC--
T ss_pred             CCEEEEEECCC
Confidence            99999887643

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=92.85  E-value=0.25  Score=40.20  Aligned_cols=68  Identities=21%  Similarity=0.351  Sum_probs=54.7

Q ss_pred             ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhh-CCCCCceEEE--ECCeecCC-CCCccccCcCcCcEE
Q 012736          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL  219 (457)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~q~L~--~~g~~L~d-~~tL~~y~i~~~~~i  219 (457)
                      ...|.|+..+|..+.-....++||.+|...|.... +.+...+.|+  |-.+.++| +.||.+.|+.+...+
T Consensus        52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            46778888999999999999999999999998864 3555667776  45788865 689999999985544

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=92.35  E-value=0.28  Score=36.43  Aligned_cols=47  Identities=11%  Similarity=0.158  Sum_probs=42.0

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  427 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g  427 (457)
                      .+|.|.|.+.  -++.+.|+++.+..+|..+|+++.++|++...|.|..
T Consensus         4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            4577888876  4899999999999999999999999999999999954

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=92.32  E-value=0.56  Score=34.41  Aligned_cols=61  Identities=18%  Similarity=0.383  Sum_probs=53.8

Q ss_pred             EEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      +.-.++-+.++..||..++.+.|++.+.-.+...+..|+++++|.+-+|+-.-.+.+.+-.
T Consensus         5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi   65 (89)
T 2juo_A            5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV   65 (89)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred             hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence            3445677889999999999999999999999999999999999999999988888887654

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=92.25  E-value=0.56  Score=38.20  Aligned_cols=63  Identities=32%  Similarity=0.488  Sum_probs=47.0

Q ss_pred             CEEEEEecCCccHHHHHHHHhhhc--CCCC------CCeEEEE----cCe-ecCCC-------------CcccccCCCCC
Q 012736          391 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQKE  444 (457)
Q Consensus       391 ~~~~l~v~~~~tV~~lK~~i~~~~--gip~------~~q~l~~----~g~-~L~d~-------------~tL~~~~i~~~  444 (457)
                      ..+.++|-..+||.++|++|-+..  |.|-      ++.-|-+    .|+ .|.|.             .||+.|+|.+|
T Consensus        41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg  120 (138)
T 2r2o_A           41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  120 (138)
T ss_dssp             CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred             CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence            458889999999999999998775  4543      3445554    243 36553             48999999999


Q ss_pred             CEEEEEEec
Q 012736          445 STLHLVLRL  453 (457)
Q Consensus       445 ~~i~l~~r~  453 (457)
                      +++.+.-|.
T Consensus       121 a~l~l~~~~  129 (138)
T 2r2o_A          121 ATVALVPCL  129 (138)
T ss_dssp             CEEEEEEC-
T ss_pred             CEEEEEECC
Confidence            999998764

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=91.99  E-value=0.49  Score=37.53  Aligned_cols=64  Identities=31%  Similarity=0.481  Sum_probs=47.0

Q ss_pred             CCEEEEEecCCccHHHHHHHHhhhc--CCCC------CCeEEEE-cC---e-ecCCC-------------CcccccCCCC
Q 012736          390 GKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF-AG---K-QLEDG-------------RTLADYNIQK  443 (457)
Q Consensus       390 g~~~~l~v~~~~tV~~lK~~i~~~~--gip~------~~q~l~~-~g---~-~L~d~-------------~tL~~~~i~~  443 (457)
                      ...+.++|-..+||.++|++|-+..  |.|.      +...|-+ .|   + .|.|.             .||++|+|.+
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            3457888889999999999997764  5553      4555665 23   3 35542             5899999999


Q ss_pred             CCEEEEEEec
Q 012736          444 ESTLHLVLRL  453 (457)
Q Consensus       444 ~~~i~l~~r~  453 (457)
                      |+++.+..|.
T Consensus       106 gatl~l~~~~  115 (117)
T 4e74_A          106 GSVVALVSKQ  115 (117)
T ss_dssp             TCEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999998764

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.89  E-value=0.28  Score=36.16  Aligned_cols=64  Identities=13%  Similarity=0.235  Sum_probs=54.7

Q ss_pred             ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEE---CCeecCCCCCccccCcCc
Q 012736          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK  215 (457)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~g~~L~d~~tL~~y~i~~  215 (457)
                      .+.+.|.....+...+.|+|.-+.+++--.|.++..+.++...|..   .+..|+-+++|.||||++
T Consensus        10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A           10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            3455666666777889999999999999999999999999888864   367899999999999997

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=91.83  E-value=0.55  Score=35.29  Aligned_cols=68  Identities=13%  Similarity=0.205  Sum_probs=48.2

Q ss_pred             CceeeEEEcCCCCEEEEEecCC-ccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~-~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..|+|.|+   |+  .++++.. .||.+|.+.+    ++++....+..||..+..+ ...+.-+++||.|.+.-..-||
T Consensus        19 ~~M~I~vN---Ge--~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG   87 (87)
T 1tyg_B           19 GRHMLQLN---GK--DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG   87 (87)
T ss_dssp             ---CEEET---TE--EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred             cceEEEEC---CE--EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence            45777665   43  4566777 8999999876    5777777888899988643 3344568889999999888777

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=91.65  E-value=1.3  Score=34.00  Aligned_cols=73  Identities=14%  Similarity=0.322  Sum_probs=50.9

Q ss_pred             CceeeEEEcCC------C-CEEEEEecCCccHHHHHHHHhhhcC-C----------CCCCeEEEEcCeecCCCCcccccC
Q 012736          379 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN  440 (457)
Q Consensus       379 ~~~~i~v~~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~g-i----------p~~~q~l~~~g~~L~d~~tL~~~~  440 (457)
                      ++|+|.|+...      | ....++++...||.+|...+..... +          ......+..||+....     +.-
T Consensus         8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~   82 (98)
T 1vjk_A            8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE   82 (98)
T ss_dssp             -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred             CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence            57888887542      3 4677888888999999999987641 1          1234567788887764     456


Q ss_pred             CCCCCEEEEEEecCCC
Q 012736          441 IQKESTLHLVLRLRGG  456 (457)
Q Consensus       441 i~~~~~i~l~~r~~GG  456 (457)
                      +++|+.|.+.-..-||
T Consensus        83 L~dGDeV~i~ppv~GG   98 (98)
T 1vjk_A           83 LKDGDVVGVFPPVSGG   98 (98)
T ss_dssp             CCTTCEEEEESCC---
T ss_pred             CCCCCEEEEECCCCCC
Confidence            7889999998887777

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=90.01  E-value=1.2  Score=32.20  Aligned_cols=58  Identities=14%  Similarity=0.370  Sum_probs=42.4

Q ss_pred             EEEecCCccHHHHHHHHhhhcCCCC--CCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          394 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       394 ~l~v~~~~tV~~lK~~i~~~~gip~--~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .+++ ...||.+|...+....++..  ....+.-||+.+.+    .+.-+++|+.|.+.-...||
T Consensus        15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG   74 (74)
T 3rpf_C           15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG   74 (74)
T ss_dssp             CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred             EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence            3566 67899999999987544332  44567778887543    24557889999999988888

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=88.58  E-value=1.1  Score=35.52  Aligned_cols=63  Identities=32%  Similarity=0.513  Sum_probs=45.5

Q ss_pred             CcEEEEEecccccHHHHHHHHhh--hhCCCCcc------ceEee-cc---E-EccC---------C----Cccccccccc
Q 012736           10 GKTITLEVESSDTIDNVKAKIQD--KEGIPPDQ------QRLIF-AG---K-QLED---------G----RTLADYNIQK   63 (457)
Q Consensus        10 g~~~~~~v~~~dtv~~ik~ki~~--~~~ip~~~------q~l~~-~g---~-~L~~---------~----~tl~~y~i~~   63 (457)
                      +..+++.|-..|||..+|+||-+  +.|.|.++      ..|-| .|   + .|.|         +    +||++|+|.+
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            45688888899999999999965  35676553      34444 22   3 2444         1    5899999999


Q ss_pred             ccceeEEEE
Q 012736           64 ESTLHLVLR   72 (457)
Q Consensus        64 ~sti~l~~~   72 (457)
                      ++++-++.+
T Consensus       106 gatl~l~~~  114 (117)
T 4e74_A          106 GSVVALVSK  114 (117)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEeC
Confidence            999988765

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=88.54  E-value=3.3  Score=33.04  Aligned_cols=61  Identities=33%  Similarity=0.502  Sum_probs=42.9

Q ss_pred             CEEEEEecCCccHHHHHHHHhhh----cCCCC----CCeEEEE--c--CeecCC----------C----CcccccCCCCC
Q 012736          391 KTITLEVESSDTIDNVKAKIQDK----EGIPP----DQQRLIF--A--GKQLED----------G----RTLADYNIQKE  444 (457)
Q Consensus       391 ~~~~l~v~~~~tV~~lK~~i~~~----~gip~----~~q~l~~--~--g~~L~d----------~----~tL~~~~i~~~  444 (457)
                      ..+.++|-..+||.++|++|-+.    .|.|-    +.+.|-|  +  |..|.|          .    .||+.|+|.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            46788888999999999998654    36654    3444544  1  223332          1    47899999999


Q ss_pred             CEEEEEE
Q 012736          445 STLHLVL  451 (457)
Q Consensus       445 ~~i~l~~  451 (457)
                      +++.+..
T Consensus       119 atlal~k  125 (126)
T 3kuz_A          119 STIKVFK  125 (126)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEee
Confidence            9998764

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=87.91  E-value=0.91  Score=31.99  Aligned_cols=58  Identities=12%  Similarity=0.212  Sum_probs=43.4

Q ss_pred             EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .++++...||.+|...+    ++++....+..||..+..+ ...+.-+++|+.|.+.-..-||
T Consensus         9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG   66 (66)
T 1f0z_A            9 AMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_dssp             EECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred             EEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence            34667889999999887    5677777888899987632 1223457789999998877777

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=86.81  E-value=2.5  Score=38.08  Aligned_cols=62  Identities=19%  Similarity=0.284  Sum_probs=50.5

Q ss_pred             EEeeecCCchHHHHHHHHhhhhCCCCC-ceEEEE-C----CeecCC-CCCccccCcCcCcEEEEEEEec
Q 012736          165 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLR  226 (457)
Q Consensus       165 ~~~~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~-~----g~~L~d-~~tL~~y~i~~~~~i~l~~~~~  226 (457)
                      ++..++..+||.+|++.+.+.++++.+ .-||-. .    ...|.| +.||.++++.++..|.+-.+..
T Consensus       154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~  222 (231)
T 3jyu_A          154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE  222 (231)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred             EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence            557789999999999999999999997 588853 3    346665 5899999999999997766643

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=86.61  E-value=1.5  Score=32.54  Aligned_cols=47  Identities=11%  Similarity=0.182  Sum_probs=40.6

Q ss_pred             eEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCc
Q 012736          230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK  276 (457)
Q Consensus       230 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~  276 (457)
                      .+.|+....-++.+.|.++-+..+|+++|.+++++|++.-.|.|..+
T Consensus         5 ~~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~   51 (83)
T 1oey_A            5 AYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR   51 (83)
T ss_dssp             CEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred             cEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence            35566655578999999999999999999999999999999999764

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=86.29  E-value=3.4  Score=30.81  Aligned_cols=61  Identities=15%  Similarity=0.245  Sum_probs=46.6

Q ss_pred             CEEEEEecCCccHHHHHHHHhhhcC-C-----C-----CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          391 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       391 ~~~~l~v~~~~tV~~lK~~i~~~~g-i-----p-----~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ....++++...||.+|.+.+..... +     .     .....+.-||+....     +.-+++|+.|.+.-..-||
T Consensus        18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG   89 (89)
T 3po0_A           18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG   89 (89)
T ss_dssp             SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence            4677888888999999999988752 1     0     023577788988875     4457789999999988887

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=86.02  E-value=1.5  Score=39.06  Aligned_cols=62  Identities=23%  Similarity=0.386  Sum_probs=50.0

Q ss_pred             eEEeeecCCchHHHHHHHHhhhhCCCCC-ceEEE--EC-C--eecCC-CCCccccCcCcCcEEEEEEEe
Q 012736          164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FA-G--KQLED-GRTLADYNIQKESTLHLVLRL  225 (457)
Q Consensus       164 ~~~~~v~~~~tV~~lK~~i~~~~gip~~-~q~L~--~~-g--~~L~d-~~tL~~y~i~~~~~i~l~~~~  225 (457)
                      ..++.++..+||.+|++.+.+.+++|.+ ..||-  +. +  ..|++ +.||.++++.++..|.+-++.
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~  209 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN  209 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence            3567789999999999999999999987 57873  32 2  45655 579999999999999776664

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=85.24  E-value=1.9  Score=31.23  Aligned_cols=61  Identities=11%  Similarity=0.289  Sum_probs=45.1

Q ss_pred             EEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEE
Q 012736           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (457)
Q Consensus        77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~  147 (457)
                      |+|+|+..+.+...++++...||++|=+    ..|+|++.-.+..+|+.+..+.      +.+|+.+.+.-
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~   61 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR   61 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence            6788887755556688999999999764    4699998888888998876544      23477666643

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=84.19  E-value=0.96  Score=36.80  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             EEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc
Q 012736          393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA  426 (457)
Q Consensus       393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~  426 (457)
                      ..+.|..++|+.+||..|++..|+|+++|||-..
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~   91 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM   91 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence            5689999999999999999999999999998764

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=83.44  E-value=3  Score=30.41  Aligned_cols=59  Identities=7%  Similarity=0.153  Sum_probs=43.3

Q ss_pred             EEEEEecCCccHHHHHHHHhhhcC-----CCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          392 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       392 ~~~l~v~~~~tV~~lK~~i~~~~g-----ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...++ .+..||.+|...+.....     ++.....+..||+....     +.-+++|+.|.+.-..-||
T Consensus        18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG   81 (81)
T 1fm0_D           18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG   81 (81)
T ss_dssp             EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred             eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence            45555 567899999999986632     23344578889988754     4457789999998888887

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=83.16  E-value=2.2  Score=34.00  Aligned_cols=60  Identities=33%  Similarity=0.486  Sum_probs=41.5

Q ss_pred             cEEEEEecccccHHHHHHHHhhh----hCCCCcc----ceEee----ccEEccC----------C----Ccccccccccc
Q 012736           11 KTITLEVESSDTIDNVKAKIQDK----EGIPPDQ----QRLIF----AGKQLED----------G----RTLADYNIQKE   64 (457)
Q Consensus        11 ~~~~~~v~~~dtv~~ik~ki~~~----~~ip~~~----q~l~~----~g~~L~~----------~----~tl~~y~i~~~   64 (457)
                      ..+++.|-..|||..+|+||-+.    .|.|.++    ..|-|    .|..|.|          +    +||+.|+|.++
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            56888999999999999999553    5777642    23333    1222222          1    47888999999


Q ss_pred             cceeEE
Q 012736           65 STLHLV   70 (457)
Q Consensus        65 sti~l~   70 (457)
                      +++-++
T Consensus       119 atlal~  124 (126)
T 3kuz_A          119 STIKVF  124 (126)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            998765

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=83.11  E-value=7.1  Score=29.27  Aligned_cols=62  Identities=15%  Similarity=0.229  Sum_probs=43.5

Q ss_pred             EEEEecCCccHHHHHHHHhhhcC-C-----C-------CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          393 ITLEVESSDTIDNVKAKIQDKEG-I-----P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       393 ~~l~v~~~~tV~~lK~~i~~~~g-i-----p-------~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..+++ +..||.+|...+..+.. +     .       .....+.-||+...+..-+ +.-+++|+.|.+.-..-||
T Consensus        19 ~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG   93 (93)
T 3dwg_C           19 KSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG   93 (93)
T ss_dssp             SEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred             eEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence            34664 56899999999998752 0     1       1135677788887643222 3457889999999999888

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=82.51  E-value=5.3  Score=37.08  Aligned_cols=73  Identities=16%  Similarity=0.251  Sum_probs=55.3

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCC-eEEEE---cCe--ecCCCCcccccCCCCCCEEEEEEec
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~---~g~--~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      ++.+.|..++| +..+.+++++|+.++-..|++..|+.... +-|.+   +|.  -|+.++++.+.++..+....+.+|.
T Consensus         1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~   79 (294)
T 1ef1_A            1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA   79 (294)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred             CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence            35677788888 68899999999999999999999987644 45555   232  4677788888877666666666654

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=82.28  E-value=1.5  Score=32.18  Aligned_cols=61  Identities=15%  Similarity=0.328  Sum_probs=46.2

Q ss_pred             CCCEEEEEec--CCccHHHHHHHHhhhcCCC-CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          389 TGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       389 ~g~~~~l~v~--~~~tV~~lK~~i~~~~gip-~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      +|+  ..+++  .+.||.+|-..+    |++ +...-+..||..+..+ ..++.-+++||.|.+....-||
T Consensus         6 NGe--~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG   69 (78)
T 2k5p_A            6 NGK--PSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG   69 (78)
T ss_dssp             TTE--EEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred             CCE--EEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence            354  34556  779999998754    677 7777888999988654 4555667789999998888888

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=82.22  E-value=5.1  Score=37.65  Aligned_cols=75  Identities=11%  Similarity=0.122  Sum_probs=57.7

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEEE--cCe--ecCCCCcccccCCCCCCEEEEEEe
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~--~g~--~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      +.++.+.|..++| ++.+.+++++|+.+|-..|+...|+... .+-|.|  +|.  -|+.++++.+.++..+....+.+|
T Consensus        20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr   98 (314)
T 1h4r_A           20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL   98 (314)
T ss_dssp             -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred             CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence            4567888888998 7889999999999999999999998753 345555  333  377788899988776666666665


Q ss_pred             c
Q 012736          453 L  453 (457)
Q Consensus       453 ~  453 (457)
                      .
T Consensus        99 ~   99 (314)
T 1h4r_A           99 A   99 (314)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=80.99  E-value=11  Score=26.56  Aligned_cols=63  Identities=22%  Similarity=0.283  Sum_probs=44.1

Q ss_pred             ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEE
Q 012736          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (457)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~  224 (457)
                      .|.|.|....+ ...+++....||.+|.+.+    +++++.-....+|+....+.     -+++|+.|.++..
T Consensus         4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~   66 (70)
T 1ryj_A            4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV   66 (70)
T ss_dssp             CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred             eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence            46666654322 2356777788999999876    56666667778898886554     6888999877643

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=80.70  E-value=3  Score=30.06  Aligned_cols=59  Identities=14%  Similarity=0.218  Sum_probs=43.7

Q ss_pred             EEEEEecCCccHHHHHHHHhhhcCCCCCCe--EEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q--~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...++++...||.+|.+.+..... .....  .+..||+....+     .-+++||.|.+.-..-||
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG   77 (77)
T 2q5w_D           17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG   77 (77)
T ss_dssp             EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence            456777788899999999887641 01223  678899988754     457789999998877777

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=80.28  E-value=1.7  Score=35.38  Aligned_cols=36  Identities=22%  Similarity=0.317  Sum_probs=32.6

Q ss_pred             cEEEEEecccccHHHHHHHHhhhhCCCCccceEeec
Q 012736           11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (457)
Q Consensus        11 ~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~   46 (457)
                      ...++.|..+.|+.++++.|.+..|+|+++|+|+.-
T Consensus        56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~   91 (130)
T 2kvr_A           56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM   91 (130)
T ss_dssp             SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred             CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence            455789999999999999999999999999999874

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=80.13  E-value=4.4  Score=28.13  Aligned_cols=60  Identities=13%  Similarity=0.312  Sum_probs=43.4

Q ss_pred             CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      +|+.+  ++ ...||.+|...+    ++++....+..||..+..+ .-.+.-+++|+.|.+.-..-||
T Consensus         5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG   64 (64)
T 2cu3_A            5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG   64 (64)
T ss_dssp             TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred             CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence            45444  55 678999999887    4667777888899988643 2234457889999998888777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	457
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	4e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	7e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	7e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	7e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	7e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	7e-36
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	4e-35
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	8e-36
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	8e-36
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	8e-36
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	8e-36
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	8e-36
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	3e-35
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-33
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	6e-32
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	6e-32
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	6e-32
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	6e-32
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	6e-32
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	6e-32
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	4e-31
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-30
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-30
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-30
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-30
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-30
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	9e-28
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-30
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	9e-30
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-28
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	5e-28
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-28
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-28
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-28
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-28
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-28
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	4e-28
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-28
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-28
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-28
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-28
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	2e-27
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	1e-25
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	3e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-27
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-26
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	6e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-26
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	5e-25
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	5e-25
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	5e-25
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	5e-25
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	5e-25
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-24
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	5e-20
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	5e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	5e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	5e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	5e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	5e-23
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	1e-22
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-23
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-22
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	5e-21
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	6e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-20
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-18
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-18
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-18
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-18
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-18
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	4e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-18
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	1e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	2e-16
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-17
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-16
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-16
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-16
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-16
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-16
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-16

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 289 IQKESTLHLVLRLRGG 304
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 365 IQKESTLHLVLRLRGG 380
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-36
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 441 IQKESTLHLVLRLRGG 456
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (314), Expect = 7e-36
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 136 NIQKESTLHLVLRLRG 151
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (314), Expect = 7e-36
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 212 NIQKESTLHLVLRLRG 227
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (314), Expect = 7e-36
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 288 NIQKESTLHLVLRLRG 303
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (314), Expect = 7e-36
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 364 NIQKESTLHLVLRLRG 379
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (314), Expect = 7e-36
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 440 NIQKESTLHLVLRLRG 455
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (309), Expect = 4e-35
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 3  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCD 62

Query: 61 IQKESTLHLVLRLRG 75
          ++++S +H+V R R 
Sbjct: 63 LEQQSIVHIVQRPRR 77

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 8e-36
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 136 NIQKESTLHLVLRLRGG 152
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 8e-36
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 212 NIQKESTLHLVLRLRGG 228
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 8e-36
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 288 NIQKESTLHLVLRLRGG 304
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 8e-36
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 364 NIQKESTLHLVLRLRGG 380
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 8e-36
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 440 NIQKESTLHLVLRLRGG 456
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (311), Expect = 3e-35
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y 
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 61 IQKESTLHLVLRLRGG 76
          IQ   TL L  +   G
Sbjct: 68 IQDSDTLILSKKKGSG 83

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 61 IQKESTLHLVLRL 73
          I+  S LHLVL L
Sbjct: 61 IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 137 IQKESTLHLVLRL 149
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 213 IQKESTLHLVLRL 225
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 289 IQKESTLHLVLRL 301
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 365 IQKESTLHLVLRL 377
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-33
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 441 IQKESTLHLVLRL 453
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 6e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 61 IQKESTLHLVLRL 73
          ++  ST+ + LRL
Sbjct: 64 LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 6e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 137 IQKESTLHLVLRL 149
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 6e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 213 IQKESTLHLVLRL 225
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 6e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 289 IQKESTLHLVLRL 301
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 6e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 365 IQKESTLHLVLRL 377
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 6e-32
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 441 IQKESTLHLVLRL 453
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 4e-31
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 382 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 441 I-------QKESTLHLVLRLRGGF 457
                   Q  +T+ L  R    F
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTF 84

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 2  QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1  DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 61 I-------QKESTLHLVLRLRGGMQIFVKT 83
                  Q  +T+ L  R     +     
Sbjct: 61 FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 78  QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 137 I-------QKESTLHLVLRLRGGMQIFVKT 159
                   Q  +T+ L  R     +     
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 154 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 213 I-------QKESTLHLVLRLRGGMQIFVKT 235
                   Q  +T+ L  R     +     
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 230 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 289 I-------QKESTLHLVLRLRGGMQIFVKT 311
                   Q  +T+ L  R     +     
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 306 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 365 I-------QKESTLHLVLRLRGGMQIFVKT 387
                   Q  +T+ L  R     +     
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 61 IQKESTLHLVLR 72
          +     +HLV R
Sbjct: 61 VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 137 IQKESTLHLVLR 148
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 213 IQKESTLHLVLR 224
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 289 IQKESTLHLVLR 300
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 365 IQKESTLHLVLR 376
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 441 IQKESTLHLVLR 452
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 54  RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 109
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 110 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 130 RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 185
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 186 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 206 RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 261
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 262 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 282 RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 337
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 338 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 358 RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 413
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 414 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (259), Expect = 9e-28
 Identities = 16/72 (22%), Positives = 31/72 (43%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 61  IQKESTLHLVLR 72
           I     L L  +
Sbjct: 89  IHDGMNLELYYQ 100

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 68 HLVLRLRG 75
          HL L+ RG
Sbjct: 79 HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 144 HLVLRLRG 151
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 220 HLVLRLRG 227
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 295
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 296 HLVLRLRG 303
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 371
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 372 HLVLRLRG 379
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-30
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 447
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 448 HLVLRLRG 455
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-30
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 58 DYNIQKESTLHLVLRLRGGMQ 78
          +Y I +++ + +++     + 
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-30
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 134 DYNIQKESTLHLVLRLRGGMQ 154
           +Y I +++ + +++     + 
Sbjct: 61  EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-30
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 210 DYNIQKESTLHLVLRLRGGMQ 230
           +Y I +++ + +++     + 
Sbjct: 61  EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-30
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 285
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 286 DYNIQKESTLHLVLRLRGGMQ 306
           +Y I +++ + +++     + 
Sbjct: 61  EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-30
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 361
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 362 DYNIQKESTLHLVLRLRGGMQ 382
           +Y I +++ + +++     + 
Sbjct: 61  EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 9e-30
 Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 437
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 438 DYNIQKESTLHLVLRLRGG 456
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 1  MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 59 YNIQKESTLHLVLRL 73
          Y ++   T+ L++R 
Sbjct: 61 YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 77  MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 135 YNIQKESTLHLVLRL 149
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 153 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 211 YNIQKESTLHLVLRL 225
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 229 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 287 YNIQKESTLHLVLRL 301
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 305 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 363 YNIQKESTLHLVLRL 377
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 381 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 439 YNIQKESTLHLVLRL 453
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 120
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 121 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 152
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 196
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 197 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 228
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 272
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 273 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 304
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 348
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 349 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 380
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 424
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 425 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 456
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (261), Expect = 5e-28
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 16/92 (17%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 45
          M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8  MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 46 AGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 76
          AG++L + R  L DY I+    +  + +L   
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 52
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 53  GRTLADYNIQKESTLHLVLRLRGGM 77
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 129 GRTLADYNIQKESTLHLVLRLRGGM 153
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 205 GRTLADYNIQKESTLHLVLRLRGGM 229
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 280
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 281 GRTLADYNIQKESTLHLVLRLRGGM 305
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 3e-28
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 356
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 357 GRTLADYNIQKESTLHLVLRLRGGM 381
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 4e-28
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 432
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 433 GRTLADYNIQKESTLHLVLRLRGG 456
             TL    +    T  + L  R  
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARET 100

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 75  GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 129
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 162
            +L  Y ++    + L+ +   G++   +T +G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 151 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 205
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 206 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 238
            +L  Y ++    + L+ +   G++   +T +G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 227 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 281
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 282 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 314
            +L  Y ++    + L+ +   G++   +T +G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 3e-28
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 303 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 357
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 358 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 390
            +L  Y ++    + L+ +   G++   +T +G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (257), Expect = 2e-27
 Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 1  MQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRT 55
          M I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D  +
Sbjct: 8  MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86
          L  Y ++    + L+ +   G++   +T +G
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.2 bits (244), Expect = 1e-25
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 379 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 433
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 434 RTLADYNIQKESTLHLVLRLRGG 456
            +L  Y ++    + L+ +   G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVG 88

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 132
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 133 ADYNIQKESTLHLVL 147
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 208
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 209 ADYNIQKESTLHLVL 223
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 284
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 285 ADYNIQKESTLHLVL 299
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 360
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 361 ADYNIQKESTLHLVL 375
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 436
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 437 ADYNIQKESTLHLVL 451
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 3  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62

Query: 58 DYNIQKESTLHLVL 71
          DY I +++ + +++
Sbjct: 63 DYRIDEKNFVVVMV 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 61 IQKESTLHLVLRL 73
          I K+  + +++  
Sbjct: 64 IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 137 IQKESTLHLVLRL 149
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 213 IQKESTLHLVLRL 225
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 289 IQKESTLHLVLRL 301
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 365 IQKESTLHLVLRL 377
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 2e-27
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 441 IQKESTLHLVLRL 453
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 1  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 59 YNIQKESTLHLVLR 72
          Y++     + L++R
Sbjct: 61 YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 77  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 135 YNIQKESTLHLVLR 148
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 153 MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 211 YNIQKESTLHLVLR 224
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 229 MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 287 YNIQKESTLHLVLR 300
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 305 MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 363 YNIQKESTLHLVLR 376
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 381 MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 439 YNIQKESTLHLVLR 452
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2  LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 61 IQKESTLHLVLR 72
          IQ   ++HLV  
Sbjct: 61 IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 137 IQKESTLHLVLR 148
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 213 IQKESTLHLVLR 224
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 289 IQKESTLHLVLR 300
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 365 IQKESTLHLVLR 376
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 1e-26
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 441 IQKESTLHLVLR 452
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 2e-26
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 76  GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 131
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 132 LADYNIQKES--TLHLVLRLRGG 152
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 2e-26
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 152 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 207
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 208 LADYNIQKES--TLHLVLRLRGG 228
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 2e-26
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 228 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 283
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 284 LADYNIQKES--TLHLVLRLRGG 304
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 2e-26
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 304 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 359
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 360 LADYNIQKES--TLHLVLRLRGG 380
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 2e-26
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 380 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 435
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 436 LADYNIQKES--TLHLVLRLRGG 456
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (246), Expect = 6e-26
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 1  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTL 56
          + + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + L
Sbjct: 8  VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67

Query: 57 ADYNIQKES--TLHLVLRLRGG 76
           D   ++E    LHLV  ++ G
Sbjct: 68 RDLLPKQEKRHVLHLVCNVKSG 89

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 59
           + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2  DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 60 NIQKESTLHLVLR 72
           +   ST+ LV+ 
Sbjct: 62 GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 135
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 136 NIQKESTLHLVLR 148
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 211
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 212 NIQKESTLHLVLR 224
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 287
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 288 NIQKESTLHLVLR 300
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 363
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 364 NIQKESTLHLVLR 376
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 439
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 440 NIQKESTLHLVLR 452
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.1 bits (239), Expect = 5e-25
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 133
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 134 DYNIQKESTLHLVLRLRGG 152
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.1 bits (239), Expect = 5e-25
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 209
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 210 DYNIQKESTLHLVLRLRGG 228
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.1 bits (239), Expect = 5e-25
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 285
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 286 DYNIQKESTLHLVLRLRGG 304
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.1 bits (239), Expect = 5e-25
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 303 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 361
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 362 DYNIQKESTLHLVLRLRGG 380
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.1 bits (239), Expect = 5e-25
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 437
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 438 DYNIQKESTLHLVLRLRGG 456
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.6 bits (235), Expect = 2e-24
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+  
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL 64

Query: 60 NIQKESTLHLVLRLRGG 76
          NI     +H      G 
Sbjct: 65 NITNNCVIHCHRSPPGA 81

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 64  ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 118
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 119 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 140 ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 194
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 216 ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 270
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 271 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 300
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 292 ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 346
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 347 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 376
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 368 ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 422
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 423 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 452
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.2 bits (203), Expect = 5e-20
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 7  TLTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQRLIFAGKQLEDGRTLADYNIQK 63
           L    +        +I  +K  I  K  E +P P+   LI+ G++L+D +TL  Y IQ 
Sbjct: 24 QLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 83

Query: 64 ESTLHLVLR 72
           ST+H++ +
Sbjct: 84 GSTVHVLRK 92

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 61  IQKESTLHLVLR 72
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 137 IQKESTLHLVLR 148
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 213 IQKESTLHLVLR 224
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 289 IQKESTLHLVLR 300
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 365 IQKESTLHLVLR 376
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-23
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 441 IQKESTLHLVLR 452
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11 IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 61 IQKESTLHLVLR 72
          I   ST+H+V+R
Sbjct: 70 ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 137 IQKESTLHLVLR 148
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 213 IQKESTLHLVLR 224
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 289 IQKESTLHLVLR 300
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 365 IQKESTLHLVLR 376
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 3e-23
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 441 IQKESTLHLVLR 452
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 5e-23
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 132
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 133 ADYNIQKESTLHLVLRLRGG 152
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 5e-23
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 208
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 209 ADYNIQKESTLHLVLRLRGG 228
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 5e-23
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 284
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 285 ADYNIQKESTLHLVLRLRGG 304
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 5e-23
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 360
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 361 ADYNIQKESTLHLVLRLRGG 380
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 5e-23
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 436
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 437 ADYNIQKESTLHLVLRLRGG 456
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.7 bits (222), Expect = 1e-22
 Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLA 57
          + I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L 
Sbjct: 8  LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 67

Query: 58 DYNIQKESTLHLVLRLRGG 76
             ++  + + ++     G
Sbjct: 68 ALKLKPNTKIMMMGTRESG 86

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 1   MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 59  YNIQKESTLHLVLRLRGG 76
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 77  MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 135 YNIQKESTLHLVLRLRGG 152
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 153 MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 211 YNIQKESTLHLVLRLRGG 228
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 229 MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 287 YNIQKESTLHLVLRLRGG 304
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 305 MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 363 YNIQKESTLHLVLRLRGG 380
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.8 bits (225), Expect = 7e-23
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 381 MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 439 YNIQKESTLHLVLRLRGG 456
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 61 IQKESTLHLVLRLR 74
          ++   T+HLV++ +
Sbjct: 67 VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 137 IQKESTLHLVLRLR 150
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 213 IQKESTLHLVLRLR 226
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 289 IQKESTLHLVLRLR 302
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 365 IQKESTLHLVLRLR 378
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 441 IQKESTLHLVLRLR 454
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2  IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 61 IQKESTLHL 69
          +  ++ L L
Sbjct: 62 VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 137 IQKESTLHL 145
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 213 IQKESTLHL 221
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 289 IQKESTLHL 297
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 365 IQKESTLHL 373
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 441 IQKESTLHL 449
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 1  MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 52
          ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8  LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 53 GRTLADYNI------QKESTLHLVLR 72
           +T+ DY           +T+H++++
Sbjct: 68 SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 77  MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 128
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 129 GRTLADYNI------QKESTLHLVLR 148
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 153 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 204
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 205 GRTLADYNI------QKESTLHLVLR 224
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 229 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 280
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 281 GRTLADYNI------QKESTLHLVLR 300
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 305 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 356
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 357 GRTLADYNI------QKESTLHLVLR 376
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 381 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 432
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 433 GRTLADYNI------QKESTLHLVLR 452
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 4e-21
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 76  GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 127
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 128 DGRTLADYNIQKESTLHLVLRLRGGMQ 154
           +   L  Y +     +H++     G  
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 4e-21
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 152 GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 203
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 204 DGRTLADYNIQKESTLHLVLRLRGGMQ 230
           +   L  Y +     +H++     G  
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 4e-21
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 228 GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 279
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 280 DGRTLADYNIQKESTLHLVLRLRGGMQ 306
           +   L  Y +     +H++     G  
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 4e-21
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 304 GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 355
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 356 DGRTLADYNIQKESTLHLVLRLRGGMQ 382
           +   L  Y +     +H++     G  
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 5e-21
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 380 GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 431
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 432 DGRTLADYNIQKESTLHLVLRLRGG 456
           +   L  Y +     +H++     G
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSG 91

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.2 bits (208), Expect = 1e-20
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 8/86 (9%)

Query: 1  MQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LED 52
          + +F+ + L           S TI   K K++   G P     L   G          ++
Sbjct: 8  VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67

Query: 53 GRTLADYNIQKESTLHLVLRLRGGMQ 78
             L  Y +     +H++     G  
Sbjct: 68 DALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 1  MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 59 YNIQKESTLHLVLRLRGG 76
            +       ++   +  
Sbjct: 78 QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 77  MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 135 YNIQKESTLHLVLRLRGG 152
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 153 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 211 YNIQKESTLHLVLRLRGG 228
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 229 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 286
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 287 YNIQKESTLHLVLRLRGG 304
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 305 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 362
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 363 YNIQKESTLHLVLRLRGG 380
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 381 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 439 YNIQKESTLHLVLRLRGG 456
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 57
               + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18 NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 58 DYNIQKESTLHLV 70
           Y+++    L + 
Sbjct: 78 FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 133
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 134 DYNIQKESTLHLV 146
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 209
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 210 DYNIQKESTLHLV 222
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 234 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 285
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 286 DYNIQKESTLHLV 298
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 361
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 362 DYNIQKESTLHLV 374
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 7e-20
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 437
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 438 DYNIQKESTLHLV 450
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 75  GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 134 DYNIQKESTLHLVLRLRGG 152
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 151 GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 210 DYNIQKESTLHLVLRLRGG 228
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 227 GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 285
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 286 DYNIQKESTLHLVLRLRGG 304
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 303 GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 362 DYNIQKESTLHLVLRLRGG 380
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 379 GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 438 DYNIQKESTLHLVLRLRGG 456
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.9 bits (189), Expect = 4e-18
 Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + +         ++V    T   +K KI    G+PP  Q++++    + + +TL +  
Sbjct: 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLREIK 75

Query: 61 IQKESTLHLVLRLRGG 76
          +   + + +V     G
Sbjct: 76 VTSGAKIMVVGSTISG 91

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5  INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 61 IQKESTLHLVLRLRGG 76
          ++    +       GG
Sbjct: 64 MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 137 IQKESTLHLVLRLRGG 152
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 213 IQKESTLHLVLRLRGG 228
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 289 IQKESTLHLVLRLRGG 304
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 365 IQKESTLHLVLRLRGG 380
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 441 IQKESTLHLVLRLRGG 456
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 4e-18
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 136 NIQKESTLHLV 146
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 4e-18
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 212 NIQKESTLHLV 222
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 4e-18
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 287
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 288 NIQKESTLHLV 298
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 4e-18
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 363
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 364 NIQKESTLHLV 374
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 4e-18
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 440 NIQKESTLHLV 450
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.8 bits (186), Expect = 1e-17
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8  YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 61 IQKESTLHLV 70
          ++   T+ ++
Sbjct: 67 MKNGMTVLMM 76

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 76  GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 129
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 130 RTLADYNIQKESTLHLVLR 148
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 152 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 205
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 206 RTLADYNIQKESTLHLVLR 224
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 228 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 281
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 282 RTLADYNIQKESTLHLVLR 300
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 304 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 357
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 358 RTLADYNIQKESTLHLVLR 376
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 380 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 433
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 434 RTLADYNIQKESTLHLVLR 452
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (175), Expect = 2e-16
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 1  MQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 54
          + + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E   
Sbjct: 2  LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMET 60

Query: 55 TLADYNIQKESTLHLVLR 72
           L+   IQ    + L+ +
Sbjct: 61 PLSALGIQDGCRVMLIGK 78

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 61 IQKESTLHLVLRLRG 75
          +++E  + +     G
Sbjct: 63 MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 137 IQKESTLHLVLRLRG 151
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 213 IQKESTLHLVLRLRG 227
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 289 IQKESTLHLVLRLRG 303
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 365 IQKESTLHLVLRLRG 379
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 441 IQKESTLHLVLRLRG 455
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 7  TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 59
            T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12 NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 60 NIQKESTLHLVLRLRG 75
           ++    +H V    G
Sbjct: 72 GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 83  TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 135
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 136 NIQKESTLHLVLRLRG 151
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 211
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 212 NIQKESTLHLVLRLRG 227
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 287
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 288 NIQKESTLHLVLRLRG 303
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 363
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 364 NIQKESTLHLVLRLRG 379
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 387 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 439
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 440 NIQKESTLHLVLRLRG 455
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	457
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.85
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.84
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.83
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.82
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.82
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.82
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.82
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.81
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.81
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.8
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.79
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.79
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.78
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.76
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.76
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.75
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.75
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.74
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.74
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.73
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.72
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.72
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.71
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.71
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.71
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.7
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.7
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.69
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.69
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.69
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.66
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.65
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.65
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.64
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.64
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.63
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.62
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.62
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.61
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.61
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.6
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.59
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.59
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.57
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.56
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.55
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.55
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.54
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.53
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.53
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.51
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.5
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.5
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.49
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.48
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.46
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.43
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.4
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.4
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.36
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.36
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.29
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.27
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.26
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.26
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.26
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.13
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.11
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.11
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	98.98
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.47
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.05
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.88
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.63
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	96.21
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	96.2
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.88
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.78
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.7
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	94.55
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	94.12
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	93.94
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	88.66
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	88.43
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	87.98
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	85.94
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	84.36
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	81.22

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4e-22  Score=149.31  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=75.3

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      |+|+|++++|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|||++||+|+|.+|++||
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999999999

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.9e-21  Score=145.86  Aligned_cols=76  Identities=34%  Similarity=0.614  Sum_probs=74.9

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G  455 (457)
                      .|+|||++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||+++|+|++..|+||
T Consensus         2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            5999999999999999999999999999999999999999999999999999999999999999999999999998

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.1e-21  Score=147.14  Aligned_cols=75  Identities=33%  Similarity=0.593  Sum_probs=73.6

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|||++.+|++++++|+++|||.++|++|++++|+|+++|+|+|+|++|+|+.+|++|+|.++|++|+++++++
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999875

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=5.4e-21  Score=141.87  Aligned_cols=73  Identities=62%  Similarity=0.943  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++++|++++++|+++|||.++|++|+++.|+|+++|+|+|+|++|+|++||++|+|.++|++|+++|+
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999874

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.2e-21  Score=142.37  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=74.2

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      |||||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.||++|+|.++|++||+++++++
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998764

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.2e-21  Score=141.86  Aligned_cols=73  Identities=34%  Similarity=0.560  Sum_probs=71.3

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |||||++.+|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.++||+|+++|+
T Consensus         4 ~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           4 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999998874

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=2e-20  Score=138.74  Aligned_cols=73  Identities=62%  Similarity=0.943  Sum_probs=71.8

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      |+|+|++.+|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|||++||+|++.+||
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999986

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-20  Score=143.70  Aligned_cols=79  Identities=34%  Similarity=0.540  Sum_probs=76.9

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ...|+|||++++|+++.++|++++||.+||++|++++|||+++|+|+|+|+.|+|+.||++|||+++++|+|..|++||
T Consensus         5 s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~g   83 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred             CCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCCC
Confidence            3579999999999999999999999999999999999999999999999999999999999999999999999999998

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.9e-21  Score=145.34  Aligned_cols=75  Identities=33%  Similarity=0.510  Sum_probs=72.8

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |||||++++|++++++|+++|||.++|++|++++|||+++|+|+|+|++|+|+++|++|+|.+++++||+.+.++
T Consensus         8 mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~   82 (87)
T d1wh3a_           8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS   82 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred             EEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987654

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.2e-20  Score=138.84  Aligned_cols=75  Identities=33%  Similarity=0.535  Sum_probs=73.2

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      .+|+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|++++||
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999986

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.8e-20  Score=138.42  Aligned_cols=73  Identities=37%  Similarity=0.647  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCc-EEEEE-ecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~-~~~~~-v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|||++++|+ +++++ +++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||++|.
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            89999999996 89986 999999999999999999999999999999999999999999999999999999875

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.8e-20  Score=138.72  Aligned_cols=72  Identities=35%  Similarity=0.613  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|++|+|+++|++|+| +++|+||+++.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecC
Confidence            8999999999999999999999999999999999999999999999999999999999999 58999998764

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2e-19  Score=133.77  Aligned_cols=73  Identities=37%  Similarity=0.647  Sum_probs=70.3

Q ss_pred             eeeEEEcCCCC-EEEEE-ecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          381 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       381 ~~i~v~~~~g~-~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      |+|+|++++|+ +++++ +++++||++||.+|+++.|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|+
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            89999999996 78885 999999999999999999999999999999999999999999999999999999986

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-19  Score=135.39  Aligned_cols=73  Identities=37%  Similarity=0.622  Sum_probs=70.3

Q ss_pred             CeEEEEcCCC-cEEEE-EecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g-~~~~~-~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++++| +++++ .|.+++||.++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+++++||++++
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            8999999999 68998 5999999999999999999999999999999999999999999999999999999885

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.2e-19  Score=136.79  Aligned_cols=74  Identities=28%  Similarity=0.525  Sum_probs=71.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      |||||++.+|++++++|+++|||.++|++|+++.|+|+++|+|+|+|+.|+|++||++|+|.++|++|++++.+
T Consensus         4 ~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p   77 (80)
T d1ttna1           4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP   77 (80)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999988643

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-18  Score=129.72  Aligned_cols=73  Identities=37%  Similarity=0.622  Sum_probs=69.6

Q ss_pred             eeeEEEcCCC-CEEEE-EecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          381 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       381 ~~i~v~~~~g-~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      |+|+|++.+| +++++ +|++++||++||.+|++++|+|+++|+|+|+|++|+|+.||++|||++|++|+|++|.
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            8999999999 57887 5999999999999999999999999999999999999999999999999999999874

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.2e-19  Score=131.96  Aligned_cols=77  Identities=27%  Similarity=0.469  Sum_probs=73.7

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G  455 (457)
                      ..++|+|++.+|+++.++|++++||++||.+|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.++...
T Consensus         2 ~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p~   78 (80)
T d1ttna1           2 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV   78 (80)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred             CeEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999988653

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=6.1e-19  Score=130.32  Aligned_cols=70  Identities=23%  Similarity=0.437  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~   70 (457)
                      |+|+|++..|++++++|.++|||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++|++||.
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEE
Confidence            6899999999999999999999999999999999999999999999999999999999999999999985

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.3e-18  Score=128.44  Aligned_cols=72  Identities=22%  Similarity=0.409  Sum_probs=69.6

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      +|+|+|++..|+++.++|+|++||++||++|++++|+||++|+|+|+|+.|+|+.||++|||++||+|+|..
T Consensus         1 mi~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             CEEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEEE
Confidence            478999999999999999999999999999999999999999999999999999999999999999999864

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.3e-18  Score=134.43  Aligned_cols=74  Identities=31%  Similarity=0.606  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhC---CCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~---ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      |+|+|++++|++++++|+++|||.++|++|+++.|   +|+++|+|+|+|+.|+|+++|++|+|.+++++|++++.+
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~   77 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCC
Confidence            99999999999999999999999999999999875   899999999999999999999999999999999988643

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.5e-19  Score=130.25  Aligned_cols=72  Identities=35%  Similarity=0.613  Sum_probs=69.3

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      |+|+|++.+|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++||| ++++|+|+.|.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecC
Confidence            7899999999999999999999999999999999999999999999999999999999999 58999998874

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.5e-18  Score=129.45  Aligned_cols=68  Identities=31%  Similarity=0.646  Sum_probs=66.8

Q ss_pred             CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736          388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (457)
Q Consensus       388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G  455 (457)
                      ++|++++++|++++||++||.+|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|+.|+||
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999998

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.6e-18  Score=126.11  Aligned_cols=72  Identities=33%  Similarity=0.444  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEee--ccEEccCCCcccccccccccceeEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~--~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      +||.|++++|++++++|++++||.++|++|+++.|+|+++|+|+|  .|+.|+|+.+|++|+|.+++++||+++
T Consensus         1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~   74 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD   74 (76)
T ss_dssp             CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEE
Confidence            589999999999999999999999999999999999999999999  699999999999999999999999875

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.1e-17  Score=123.53  Aligned_cols=72  Identities=33%  Similarity=0.553  Sum_probs=67.9

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      +|+|+|++. ++.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.|
T Consensus         1 si~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           1 SLNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            478999976 457999999999999999999999999999999999999999999999999999999999876

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.71  E-value=7.7e-18  Score=133.97  Aligned_cols=69  Identities=33%  Similarity=0.494  Sum_probs=66.8

Q ss_pred             CCCCEEEEEecC-CccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          388 LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       388 ~~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      .+|++++++|.+ ++||++||.+|++++|+|+++|+|+|.|+.|+|+.||++|||++|++|+|++|+|||
T Consensus        38 ~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~rGG  107 (111)
T d1we6a_          38 NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG  107 (111)
T ss_dssp             SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred             CCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCCCC
Confidence            358999999987 999999999999999999999999999999999999999999999999999999999

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.1e-18  Score=126.44  Aligned_cols=71  Identities=32%  Similarity=0.587  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhC---CCCccceEeeccEEccCCCcccccccccccceeEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~---ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~   71 (457)
                      |+|+|++++|++++++|++++||.++|++|+++.|   +|+++|+|+|+|+.|+|+++|++|+|.+++++++++
T Consensus         3 ~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            89999999999999999999999999999999988   999999999999999999999999999999999875

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-17  Score=124.06  Aligned_cols=73  Identities=33%  Similarity=0.428  Sum_probs=69.8

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      ++|+|++.+|+.+.++|++++||++||.+|++..|+|+++|+|+|  .|+.|+|+.+|++|||++|++|+|+++.
T Consensus         1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~   75 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK   75 (76)
T ss_dssp             CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEEC
Confidence            378999999999999999999999999999999999999999999  6999999999999999999999999863

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.7e-17  Score=128.21  Aligned_cols=75  Identities=31%  Similarity=0.593  Sum_probs=71.1

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcC---CCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G  455 (457)
                      |+|+|++.+|++++++|++++||++||++|+++.|   +|+++|+|+|+|+.|+|+.||++|||.+|++|+++++...
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~~   78 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCCC
Confidence            89999999999999999999999999999999875   8999999999999999999999999999999999887543

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.8e-17  Score=122.40  Aligned_cols=71  Identities=34%  Similarity=0.558  Sum_probs=67.4

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      |+|.|++. |++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+.+
T Consensus         2 i~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           2 LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            68999985 668999999999999999999999999999999999999999999999999999999999864

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2e-17  Score=125.62  Aligned_cols=76  Identities=33%  Similarity=0.438  Sum_probs=71.2

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G  455 (457)
                      ..|+|+|++..+ .+.++|++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|...
T Consensus         6 ~~i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1           6 HLIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             TEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CEEEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCC
Confidence            469999999765 6899999999999999999999999999999999999999999999999999999999998653

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.5e-17  Score=124.25  Aligned_cols=72  Identities=32%  Similarity=0.581  Sum_probs=69.1

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcC---CCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      +|+|+|++.+|+++.++|+|++||++||++|+++.|   +|+++|+|+|+|+.|+|+.||++|||++|++|.+.+
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            689999999999999999999999999999999987   999999999999999999999999999999998864

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.3e-17  Score=129.97  Aligned_cols=73  Identities=22%  Similarity=0.306  Sum_probs=70.4

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      .++|+|++..|+.+.++|+|++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|..+
T Consensus        28 ~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~~~  100 (100)
T d1uh6a_          28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ  100 (100)
T ss_dssp             EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEEEC
Confidence            3699999999999999999999999999999999999999999999999999999999999999999999864

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.2e-17  Score=130.09  Aligned_cols=70  Identities=23%  Similarity=0.328  Sum_probs=68.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~   70 (457)
                      |+|+|++..|++++++|.|+|||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.
T Consensus        29 i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~   98 (100)
T d1uh6a_          29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEE
Confidence            5899999999999999999999999999999999999999999999999999999999999999999986

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.9e-17  Score=125.81  Aligned_cols=74  Identities=34%  Similarity=0.476  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|+|++.++ +++++|.+++||.++|++|++++|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++.+.
T Consensus         8 i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1           8 IKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCC
Confidence            7999999865 5899999999999999999999999999999999999999999999999999999999987643

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.4e-16  Score=125.77  Aligned_cols=74  Identities=31%  Similarity=0.390  Sum_probs=69.7

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      +..|+|+|++..+ .+.++|++++||.+||.+|++++|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|
T Consensus        30 ~~~i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          30 PKIIKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCCEEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             CCeEEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            3469999998766 5899999999999999999999999999999999999999999999999999999999986

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=1.3e-16  Score=123.18  Aligned_cols=75  Identities=27%  Similarity=0.436  Sum_probs=69.1

Q ss_pred             CeEEEEcCCCcEE-EEEecccccHHHHHHHHhh-----hhCCC--CccceEeeccEEccCCCccccccccccc------c
Q 012736            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES------T   66 (457)
Q Consensus         1 ~~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki~~-----~~~ip--~~~q~l~~~g~~L~~~~tl~~y~i~~~s------t   66 (457)
                      |+|.|++++|+.+ ++.|++++||.+||++|++     ++|+|  +++|+|+|.|+.|+|++||++|+|..++      +
T Consensus         8 i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~~~t   87 (101)
T d1se9a_           8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   87 (101)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCCceE
Confidence            6899999999987 6999999999999999976     48898  7899999999999999999999999997      8


Q ss_pred             eeEEEEecC
Q 012736           67 LHLVLRLRG   75 (457)
Q Consensus        67 i~l~~~~~~   75 (457)
                      +||+++++.
T Consensus        88 mHlVvrpp~   96 (101)
T d1se9a_          88 MHVIIQAPV   96 (101)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEeCCCC
Confidence            999998753

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.3e-17  Score=122.03  Aligned_cols=68  Identities=31%  Similarity=0.646  Sum_probs=65.7

Q ss_pred             CCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736            8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         8 ~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      ++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|++||++|+|.+++++||+++.+|
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            68999999999999999999999999999999999999999999999999999999999999998764

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=6.1e-17  Score=122.65  Aligned_cols=74  Identities=27%  Similarity=0.331  Sum_probs=69.4

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      ...|+|+|++..+ .++++|++++||.+||++|++.+|+|+++|+|+|.|+.|+|+.+|++|||++|++|+|++|
T Consensus         8 ~~~i~v~Vk~~~~-~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1           8 SRIIRVSVKTPQD-CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             SCEEEEEEECSSS-EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             CCeEEEEEEcCCC-cEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEe
Confidence            3569999998765 5799999999999999999999999999999999999999999999999999999999886

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.64  E-value=4.1e-17  Score=129.70  Aligned_cols=75  Identities=31%  Similarity=0.455  Sum_probs=69.8

Q ss_pred             eEEEEc-CCCcEEEEEecc-cccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736            2 QIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (457)
Q Consensus         2 ~i~~~~-~~g~~~~~~v~~-~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~   76 (457)
                      +|+|++ .+|++++++|.+ +|||.+||++|+++.|+|+++|+|+|.|+.|+|+.||++|+|.+++++||+++++++
T Consensus        31 ~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~rGG  107 (111)
T d1we6a_          31 RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG  107 (111)
T ss_dssp             EECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred             EEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCCCC
Confidence            556665 469999999997 999999999999999999999999999999999999999999999999999998875

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.4e-16  Score=124.88  Aligned_cols=78  Identities=23%  Similarity=0.434  Sum_probs=71.4

Q ss_pred             CceeeEE----EcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecC-CCCcccccCCCCCCEEEEEEec
Q 012736          379 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       379 ~~~~i~v----~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~-d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      -.|.|+|    ++.+|.++.++|++++||++||++|+.++|||+++|+|+|+|+.|. |..||++|||++|++|+|+.|.
T Consensus         6 ~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r~   85 (102)
T d1v5oa_           6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEECC
Confidence            3588888    6778999999999999999999999999999999999999999995 5679999999999999999887


Q ss_pred             CCC
Q 012736          454 RGG  456 (457)
Q Consensus       454 ~GG  456 (457)
                      .++
T Consensus        86 ~~~   88 (102)
T d1v5oa_          86 NVG   88 (102)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3.7e-16  Score=124.88  Aligned_cols=72  Identities=24%  Similarity=0.436  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHH--------hhhhCCCCccceEeeccEEccCCCcccccccccccc--eeEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST--LHLV   70 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki--------~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~st--i~l~   70 (457)
                      |+|+|++++|+++++.|+++|||.+||++|        +++.|+|+++|+|+|.|+.|+|+.+|++|+|.++++  +||+
T Consensus        17 i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~lhlv   96 (116)
T d1wgha_          17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEEEEE
Confidence            689999999999999999999999999999        678999999999999999999999999999999987  6776


Q ss_pred             EE
Q 012736           71 LR   72 (457)
Q Consensus        71 ~~   72 (457)
                      ++
T Consensus        97 ~r   98 (116)
T d1wgha_          97 AR   98 (116)
T ss_dssp             EC
T ss_pred             eC
Confidence            65

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.2e-16  Score=123.05  Aligned_cols=71  Identities=32%  Similarity=0.437  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      |+|+|++.++ .++++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++|||+++
T Consensus        33 i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          33 IKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             EEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             EEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            7899999877 5799999999999999999999999999999999999999999999999999999999875

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.9e-16  Score=119.92  Aligned_cols=72  Identities=28%  Similarity=0.346  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|+|++.+++ ++++|++++||.++|++|+++.|+|+++|+|+|+|+.|.|+++|++|+|.+++++||+++.
T Consensus        11 i~v~Vk~~~~~-~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r~   82 (83)
T d1wx8a1          11 IRVSVKTPQDC-HEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS   82 (83)
T ss_dssp             EEEEEECSSSE-EEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred             EEEEEEcCCCc-EEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEeC
Confidence            78999998665 6899999999999999999999999999999999999999999999999999999998763

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.4e-15  Score=121.42  Aligned_cols=77  Identities=19%  Similarity=0.318  Sum_probs=70.0

Q ss_pred             cCceeeEEEcCCCCEEEEEecCCccHHHHHHHH--------hhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012736          378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  449 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i--------~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l  449 (457)
                      ...|+|+|+..+|+++.++|+|++||.+||.+|        ++..++||++|||+|.|+.|+|+.+|++|+|.+|+++.|
T Consensus        14 ~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~l   93 (116)
T d1wgha_          14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM   93 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred             CCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEE
Confidence            356899999999999999999999999999999        577899999999999999999999999999999998665


Q ss_pred             EEecC
Q 012736          450 VLRLR  454 (457)
Q Consensus       450 ~~r~~  454 (457)
                      ++.++
T Consensus        94 hlv~r   98 (116)
T d1wgha_          94 HLVAR   98 (116)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            55544

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.5e-16  Score=125.74  Aligned_cols=74  Identities=23%  Similarity=0.416  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccce---------------EeeccEEccCC-Ccccccccccc
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIFAGKQLEDG-RTLADYNIQKE   64 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~---------------l~~~g~~L~~~-~tl~~y~i~~~   64 (457)
                      |+|+|++.+|++++++|.+++||.+||++|+++.|+|+++|+               |+|+|+.|.|+ .+|.+|+|.++
T Consensus         8 M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~g   87 (105)
T d1v2ya_           8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCCC
Confidence            899999999999999999999999999999999999999998               99999999765 59999999999


Q ss_pred             cceeEEEEec
Q 012736           65 STLHLVLRLR   74 (457)
Q Consensus        65 sti~l~~~~~   74 (457)
                      +++||+.+++
T Consensus        88 ~~l~lv~r~~   97 (105)
T d1v2ya_          88 DEVSFIKKLG   97 (105)
T ss_dssp             EEEEEEECSC
T ss_pred             CEEEEEEecC
Confidence            9999998765

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=2.4e-15  Score=116.06  Aligned_cols=77  Identities=25%  Similarity=0.430  Sum_probs=70.4

Q ss_pred             cCceeeEEEcCCCCEE-EEEecCCccHHHHHHHHhhh-----cCCC--CCCeEEEEcCeecCCCCcccccCCCCCC----
Q 012736          378 RGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES----  445 (457)
Q Consensus       378 ~~~~~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i~~~-----~gip--~~~q~l~~~g~~L~d~~tL~~~~i~~~~----  445 (457)
                      ...|+|+++..+|+.+ .+.|++++||.+||++|++.     .|+|  +++|||+|.|+.|+|++||++|+|..|+    
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~   84 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   84 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCC
Confidence            3579999999999876 79999999999999999875     7898  8899999999999999999999999998    


Q ss_pred             --EEEEEEecC
Q 012736          446 --TLHLVLRLR  454 (457)
Q Consensus       446 --~i~l~~r~~  454 (457)
                        ++||++|..
T Consensus        85 ~~tmHlVvrpp   95 (101)
T d1se9a_          85 VTTMHVIIQAP   95 (101)
T ss_dssp             CEEEEEEECCC
T ss_pred             ceEEEEEeCCC
Confidence              999999854

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.6e-16  Score=119.63  Aligned_cols=74  Identities=28%  Similarity=0.436  Sum_probs=65.5

Q ss_pred             eEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccc-------ceeEEEEe
Q 012736            2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES-------TLHLVLRL   73 (457)
Q Consensus         2 ~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~s-------ti~l~~~~   73 (457)
                      ||||+...|+ +++++|++++||.+||++|++++|+|+++|+|+|+|++|+|++||++|+|..++       +++++++.
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~~~   80 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA   80 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEEec
Confidence            7999998775 889999999999999999999999999999999999999999999999996655       56666554


Q ss_pred             cC
Q 012736           74 RG   75 (457)
Q Consensus        74 ~~   75 (457)
                      .+
T Consensus        81 ~~   82 (103)
T d2c9wb1          81 DD   82 (103)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.8e-16  Score=125.19  Aligned_cols=76  Identities=24%  Similarity=0.436  Sum_probs=71.9

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeE---------------EEEcCeecCCC-CcccccCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIFAGKQLEDG-RTLADYNIQ  442 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~---------------l~~~g~~L~d~-~tL~~~~i~  442 (457)
                      ..|+|+|++.+|+.+.++|++++||++||.+|++.++||+++|+               |+|.|+.|.|+ .||.+|||+
T Consensus         6 s~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~   85 (105)
T d1v2ya_           6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR   85 (105)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred             CcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCC
Confidence            46999999999999999999999999999999999999999997               99999999766 599999999


Q ss_pred             CCCEEEEEEecC
Q 012736          443 KESTLHLVLRLR  454 (457)
Q Consensus       443 ~~~~i~l~~r~~  454 (457)
                      +|++|+|+.|++
T Consensus        86 ~g~~l~lv~r~~   97 (105)
T d1v2ya_          86 NRDEVSFIKKLG   97 (105)
T ss_dssp             SSEEEEEEECSC
T ss_pred             CCCEEEEEEecC
Confidence            999999999984

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.3e-15  Score=115.18  Aligned_cols=75  Identities=25%  Similarity=0.365  Sum_probs=69.1

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecC-CCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~-d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..|+|+|++.+|+.+.++|++++||.+||.+|+   .+++++|+|+|.|+.|. |.++|++|||.+|++|++.++..++
T Consensus         6 s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~~   81 (95)
T d1wiaa_           6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA   81 (95)
T ss_dssp             CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred             CcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCCC
Confidence            579999999999999999999999999999987   46889999999999996 5679999999999999999987765

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.4e-15  Score=119.14  Aligned_cols=74  Identities=22%  Similarity=0.412  Sum_probs=68.8

Q ss_pred             CeEEE----EcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEcc-CCCcccccccccccceeEEEEec
Q 012736            1 MQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~----~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~-~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      |.|+|    ++++|++|+++|++++||.++|++|+.+.|+|+++|+|+|+|+.|. |+++|++|+|.++++++|+.+..
T Consensus         8 m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r~~   86 (102)
T d1v5oa_           8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN   86 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred             EEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEECCC
Confidence            77888    7889999999999999999999999999999999999999999995 56799999999999999987644

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.4e-15  Score=117.07  Aligned_cols=75  Identities=28%  Similarity=0.414  Sum_probs=66.5

Q ss_pred             eeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCC-------CCEEEEEEec
Q 012736          382 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLRL  453 (457)
Q Consensus       382 ~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~-------~~~i~l~~r~  453 (457)
                      +|||+...++ ++.++|++++||.+||.+|++++|||+++|+|+|+|++|+|++||++|||.+       .+++.+.++.
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~~~   80 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA   80 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEEec
Confidence            4677655554 6789999999999999999999999999999999999999999999999964       4589999998


Q ss_pred             CCC
Q 012736          454 RGG  456 (457)
Q Consensus       454 ~GG  456 (457)
                      .|+
T Consensus        81 ~~~   83 (103)
T d2c9wb1          81 DDT   83 (103)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            876

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=3e-15  Score=115.46  Aligned_cols=72  Identities=25%  Similarity=0.349  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEcc-CCCcccccccccccceeEEEEecC
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRG   75 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~-~~~tl~~y~i~~~sti~l~~~~~~   75 (457)
                      |+|+|++++|+.+.++|++++||.+||++|++   +++++|+|+|+|+.|. |.++|++|+|.+++++|++++.++
T Consensus         8 m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~~---~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~   80 (95)
T d1wiaa_           8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFP---GQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHSS---STTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHhc---CCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCC
Confidence            79999999999999999999999999999974   5789999999999996 668999999999999999886543

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.5e-15  Score=118.44  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=67.6

Q ss_pred             CeEEE--EcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736            1 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~--~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      |+||+  +..+|++++++|++++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.||++|+|.++++++++..
T Consensus        18 i~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~   91 (100)
T d1wjua_          18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLEL   91 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred             EEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEc
Confidence            57888  5578999999999999999999999999999999999999999999999999999999999988764

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.1e-15  Score=116.71  Aligned_cols=73  Identities=18%  Similarity=0.299  Sum_probs=67.1

Q ss_pred             ceeeEE--EcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736          380 GMQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       380 ~~~i~v--~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      +|+|++  +...|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.||++|||+++++|++..+
T Consensus        17 ti~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~   91 (100)
T d1wjua_          17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLEL   91 (100)
T ss_dssp             EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred             EEEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEc
Confidence            456666  5567999999999999999999999999999999999999999999999999999999999987654

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=4.7e-15  Score=115.09  Aligned_cols=72  Identities=19%  Similarity=0.295  Sum_probs=67.5

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      ..|+|.|+...++.+.++|++++||.+||++|++.+|||+++|+|+|.|+.|+|+ +|++|||++|++|+|..
T Consensus         6 ~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~   77 (96)
T d1wgga_           6 SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG   77 (96)
T ss_dssp             CEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred             CceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEe
Confidence            4689999998888789999999999999999999999999999999999999986 79999999999999864

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.53  E-value=1.5e-14  Score=108.20  Aligned_cols=75  Identities=13%  Similarity=0.339  Sum_probs=70.5

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      +.|.|+. +|+...+.|.+++++..||..++++.|+|+++++|+|+|+.|.++.|+++|||++|++|++.+|++||
T Consensus         5 I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           5 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             EEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             EEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            4566665 67788899999999999999999999999999999999999999999999999999999999999999

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=4.8e-15  Score=114.81  Aligned_cols=76  Identities=18%  Similarity=0.339  Sum_probs=70.3

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  456 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  456 (457)
                      ..|.|.|+ .++++|.++|++++||++||.+|++.+|+|+++|+|+|.|+ |.|+.+|++|+|++|++|+|+.+..+|
T Consensus        16 ~~i~v~V~-~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~~~g   91 (95)
T d1v86a_          16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGSTISG   91 (95)
T ss_dssp             CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSSCCC
T ss_pred             cEEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecCCCC
Confidence            45788888 47889999999999999999999999999999999999997 999999999999999999999887776

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.3e-14  Score=107.40  Aligned_cols=73  Identities=25%  Similarity=0.433  Sum_probs=64.8

Q ss_pred             ceeeEEEcCCCCEEEEEe-----cCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecC-CCCcccccCCCCCCEEEEEEec
Q 012736          380 GMQIFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v-----~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~-d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      .|.|.|+. .+..+.++|     ++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|.|..|.
T Consensus         1 gi~i~V~~-~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~   79 (81)
T d1wxva1           1 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   79 (81)
T ss_dssp             SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             CEEEEEEE-CCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEec
Confidence            36788875 567888888     4688999999999999999999999999999996 6689999999999999998764

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-14  Score=110.97  Aligned_cols=74  Identities=28%  Similarity=0.447  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCc--EEEEEecccccHHHHHHHHhhhhC--CCCccceEeeccEEccCCCcccccccccc--cceeEEEEec
Q 012736            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~~~--ip~~~q~l~~~g~~L~~~~tl~~y~i~~~--sti~l~~~~~   74 (457)
                      |+|+|++++++  .++++|++++||.+||++|+++++  +|+++|+|+|.|+.|+|+.+|.+|....+  .++||+++.+
T Consensus         8 i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~~~   87 (93)
T d1wgda_           8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK   87 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred             EEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEecCC
Confidence            78999999875  489999999999999999999965  99999999999999999999999976544  4999988654

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.5e-14  Score=112.26  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=67.3

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      |+|.|+..+++.+.++|++++||.++|++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.++++++++..
T Consensus         8 ~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t   78 (96)
T d1wgga_           8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             EEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred             eEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEee
Confidence            68999999999999999999999999999999999999999999999999985 899999999999999753

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.1e-14  Score=108.87  Aligned_cols=78  Identities=28%  Similarity=0.470  Sum_probs=68.5

Q ss_pred             CceeeEEEcCCCC--EEEEEecCCccHHHHHHHHhhhcC--CCCCCeEEEEcCeecCCCCcccccCCCC--CCEEEEEEe
Q 012736          379 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQK--ESTLHLVLR  452 (457)
Q Consensus       379 ~~~~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~l~~~g~~L~d~~tL~~~~i~~--~~~i~l~~r  452 (457)
                      ..|+|+|++++++  .++++|++++||.+||++|++..+  +|+++|||+|.|+.|+|+.+|++|+...  +.+|||+++
T Consensus         6 ~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~   85 (93)
T d1wgda_           6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             CcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEec
Confidence            4589999998765  488999999999999999999965  9999999999999999999999997654  459999998


Q ss_pred             cCCC
Q 012736          453 LRGG  456 (457)
Q Consensus       453 ~~GG  456 (457)
                      .+.+
T Consensus        86 ~~~~   89 (93)
T d1wgda_          86 VKSG   89 (93)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7764

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3.4e-14  Score=109.00  Aligned_cols=74  Identities=22%  Similarity=0.432  Sum_probs=67.2

Q ss_pred             CceeeEEEcCCCCEEEE-EecCCccHHHHHHHHhhhcCCCCCCeEEE---EcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736          379 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~l~---~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      ..|.|+|+. .|+.+.+ +|++++||.+||++|++++|+|+++|+|+   |.|+.|+|+.+|++|||++|++|+|..+-
T Consensus         6 ~~~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~   83 (90)
T d1v5ta_           6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             CcEEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeC
Confidence            578999996 5556766 79999999999999999999999999999   68999999999999999999999998653

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=3.1e-14  Score=110.13  Aligned_cols=71  Identities=18%  Similarity=0.365  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |+|.|+ .+|++++++|++++||.+||++|+++.|+|+++|+|+|.|+ |.|+.+|++|+|.++++|+|+.+.
T Consensus        18 i~v~V~-~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~   88 (95)
T d1v86a_          18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSS
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecC
Confidence            455565 58999999999999999999999999999999999999997 999999999999999999997643

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.2e-13  Score=105.83  Aligned_cols=72  Identities=21%  Similarity=0.412  Sum_probs=66.1

Q ss_pred             CeEEEEcCCCcEEEE-EecccccHHHHHHHHhhhhCCCCccceEe---eccEEccCCCcccccccccccceeEEEEe
Q 012736            1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~-~v~~~dtv~~ik~ki~~~~~ip~~~q~l~---~~g~~L~~~~tl~~y~i~~~sti~l~~~~   73 (457)
                      |.|+|+. +|+.+.+ +|++++||.++|++|+++.|+|+++|+|+   |.|+.|+|+.+|.+|+|.+++++||+.+.
T Consensus         8 ~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~   83 (90)
T d1v5ta_           8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             EEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeC
Confidence            7899997 5667776 79999999999999999999999999999   68999999999999999999999998653

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.5e-13  Score=100.87  Aligned_cols=73  Identities=25%  Similarity=0.426  Sum_probs=63.8

Q ss_pred             ceeeeEeeccCceEEeee-----cCCchHHHHHHHHhhhhCCCCCceEEEECCeecC-CCCCccccCcCcCcEEEEEEEe
Q 012736          152 GMQIFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRL  225 (457)
Q Consensus       152 ~~~i~v~~~~g~~~~~~v-----~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~-d~~tL~~y~i~~~~~i~l~~~~  225 (457)
                      ||+|.|+ .++..+.++|     ++++||++||++|+...|+|+++|+|+|+|+.|. |+.+|++|||.+|++|+|+.+.
T Consensus         1 gi~i~V~-~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~   79 (81)
T d1wxva1           1 GLTVTVT-HSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   79 (81)
T ss_dssp             SEEEEEE-CSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             CEEEEEE-ECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEec
Confidence            5778885 4567777776     5788999999999999999999999999999995 6789999999999999998764

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=5.4e-13  Score=102.80  Aligned_cols=78  Identities=21%  Similarity=0.311  Sum_probs=68.7

Q ss_pred             CceeeEEEc-CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCe-------ecCCCCcccccCCCCCCEEEEE
Q 012736          379 GGMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       379 ~~~~i~v~~-~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~-------~L~d~~tL~~~~i~~~~~i~l~  450 (457)
                      ..|.|+|++ .++..++..++++.||.+||++|+..+|+|+++|+|+|.|+       .++|+++|++|||.+|++|||+
T Consensus         6 s~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlv   85 (95)
T d1v6ea_           6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI   85 (95)
T ss_dssp             CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred             CcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEE
Confidence            357889986 46667889999999999999999999999999999999887       4679999999999999999999


Q ss_pred             EecCCC
Q 012736          451 LRLRGG  456 (457)
Q Consensus       451 ~r~~GG  456 (457)
                      -+-..|
T Consensus        86 d~~p~~   91 (95)
T d1v6ea_          86 DHSGSG   91 (95)
T ss_dssp             CCSCCS
T ss_pred             eCCCCC
Confidence            876544

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.8e-13  Score=97.76  Aligned_cols=76  Identities=17%  Similarity=0.402  Sum_probs=73.2

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  455 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G  455 (457)
                      .++|.|++.+|+.+.+.|.+++++..|+...+++.|+|+++++|+|+|+.|.++.|++++|+++|++|++..++.|
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~G   77 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   77 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            3678999999999999999999999999999999999999999999999999999999999999999999999887

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.29  E-value=3.6e-12  Score=94.92  Aligned_cols=76  Identities=13%  Similarity=0.329  Sum_probs=70.0

Q ss_pred             cEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEeecc
Q 012736           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (457)
Q Consensus        76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~  152 (457)
                      .+.|.|+. +|+.+.+.|.+++++..|++.++++.|+|+++++|+|+|+.|+++.|+++|++.+|++|++.++..||
T Consensus         4 ~I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           4 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             EEEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             EEEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            46677765 67888899999999999999999999999999999999999999999999999999999999987765

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=5.6e-12  Score=97.60  Aligned_cols=70  Identities=19%  Similarity=0.282  Sum_probs=60.7

Q ss_pred             eeeEEEc---CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCe-------ecC-CCCcccccCCCCCCEEEE
Q 012736          381 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLE-DGRTLADYNIQKESTLHL  449 (457)
Q Consensus       381 ~~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~-------~L~-d~~tL~~~~i~~~~~i~l  449 (457)
                      ++|.|+.   .+++.++++|++++||.+||.+|+..+|+|++.|+|+|.|+       +|+ |+++|.+|||++|++|+|
T Consensus        10 iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V   89 (97)
T d1wjna_          10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEE
Confidence            3455554   45678999999999999999999999999999999999887       354 678999999999999998


Q ss_pred             E
Q 012736          450 V  450 (457)
Q Consensus       450 ~  450 (457)
                      .
T Consensus        90 ~   90 (97)
T d1wjna_          90 R   90 (97)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=2.4e-12  Score=99.09  Aligned_cols=74  Identities=19%  Similarity=0.265  Sum_probs=67.0

Q ss_pred             CeEEEEc-CCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccE-------EccCCCcccccccccccceeEEEE
Q 012736            1 MQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVLR   72 (457)
Q Consensus         1 ~~i~~~~-~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~-------~L~~~~tl~~y~i~~~sti~l~~~   72 (457)
                      |.|||.+ .++..+..+++++.||.+||.||+...|+|++.|+|+|.|+       .++|+.+|.+|+|.++++||++.+
T Consensus         8 v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd~   87 (95)
T d1v6ea_           8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH   87 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred             EEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEEeC
Confidence            5789997 57778889999999999999999999999999999999887       478899999999999999999876


Q ss_pred             ec
Q 012736           73 LR   74 (457)
Q Consensus        73 ~~   74 (457)
                      .+
T Consensus        88 ~p   89 (95)
T d1v6ea_          88 SG   89 (95)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3.9e-12  Score=96.47  Aligned_cols=84  Identities=27%  Similarity=0.391  Sum_probs=64.7

Q ss_pred             CCcceeEEEeecce---eeeEeeccCceEEeeecCCchHHHHHHHHhhhh--CCC-CCceEEEECCeecCCCCCccccCc
Q 012736          140 ESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNI  213 (457)
Q Consensus       140 ~s~i~l~~~~~~~~---~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~--gip-~~~q~L~~~g~~L~d~~tL~~y~i  213 (457)
                      -|..|+.++..++.   ...++.+.. .....+..+.||.+||+.|..++  +.| +++|||+|+|+.|+|+.+|++|+|
T Consensus         3 ~s~~~~~~~l~~~p~~pk~~i~~p~~-~~~~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I   81 (94)
T d1x1ma1           3 LSDWHLAVKLADQPLAPKSILQLPET-ELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGI   81 (94)
T ss_dssp             CCSCCEEEEETTCTTSCCEEECCCCC-SSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTC
T ss_pred             cccceEEEEEccCCCCCcceEECCCC-ccCccCCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCC
Confidence            36678888876652   334444432 22233456889999999998876  454 689999999999999999999999


Q ss_pred             CcCcEEEEEEE
Q 012736          214 QKESTLHLVLR  224 (457)
Q Consensus       214 ~~~~~i~l~~~  224 (457)
                      ++|++|||+.|
T Consensus        82 ~~gstihLV~r   92 (94)
T d1x1ma1          82 QPGSTVHVLRK   92 (94)
T ss_dssp             CTTCEEEEEES
T ss_pred             CCCCEEEEEEe
Confidence            99999999875

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3e-12  Score=97.15  Aligned_cols=84  Identities=27%  Similarity=0.398  Sum_probs=62.7

Q ss_pred             ceEEEEEEecCc---eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhc--CCC-CCCeEEEEcCeecCCCCcccccCCC
Q 012736          369 STLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQ  442 (457)
Q Consensus       369 ~~l~l~~~~~~~---~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~--gip-~~~q~l~~~g~~L~d~~tL~~~~i~  442 (457)
                      |.+|+..+....   -...++..+.+ ....+..+.||.+||++|+++.  ++| |++|+|+|+|+.|+|+.+|++|||+
T Consensus         4 s~~~~~~~l~~~p~~pk~~i~~p~~~-~~~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~   82 (94)
T d1x1ma1           4 SDWHLAVKLADQPLAPKSILQLPETE-LGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ   82 (94)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCCS-SCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred             ccceEEEEEccCCCCCcceEECCCCc-cCccCCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCC
Confidence            455666554222   23455444321 1223456889999999999886  455 6999999999999999999999999


Q ss_pred             CCCEEEEEEec
Q 012736          443 KESTLHLVLRL  453 (457)
Q Consensus       443 ~~~~i~l~~r~  453 (457)
                      +|+||||+.|-
T Consensus        83 ~gstihLV~r~   93 (94)
T d1x1ma1          83 PGSTVHVLRKS   93 (94)
T ss_dssp             TTCEEEEEESS
T ss_pred             CCCEEEEEEeC
Confidence            99999999873

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=6e-11  Score=91.64  Aligned_cols=71  Identities=18%  Similarity=0.274  Sum_probs=62.0

Q ss_pred             EEEEEEc---cCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCcc-------cc-ccCcccccccccCCccee
Q 012736           77 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE-DGRTLADYNIQKESTLHL  145 (457)
Q Consensus        77 ~~i~vk~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~-------L~-d~~tl~~y~i~~~s~i~l  145 (457)
                      ++|+|+.   .+++.+++++++++||.+||.+|+..+|+|++.|+|+|.|+.       |+ |+++|.+|+|.+|++|++
T Consensus        10 iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V   89 (97)
T d1wjna_          10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEE
Confidence            4566664   346789999999999999999999999999999999999974       43 789999999999999998


Q ss_pred             EE
Q 012736          146 VL  147 (457)
Q Consensus       146 ~~  147 (457)
                      ..
T Consensus        90 ~~   91 (97)
T d1wjna_          90 RW   91 (97)
T ss_dssp             EC
T ss_pred             Ee
Confidence            64

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.11  E-value=1.2e-10  Score=88.61  Aligned_cols=71  Identities=15%  Similarity=0.229  Sum_probs=59.5

Q ss_pred             eeEEEc-CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCe-------ecCCCCcccccCCCCCCEEEEEEe
Q 012736          382 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVLR  452 (457)
Q Consensus       382 ~i~v~~-~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~-------~L~d~~tL~~~~i~~~~~i~l~~r  452 (457)
                      .+.|.+ .++......++++.||.+||.+|+..+|+|++.|+|+|.|+       ..+|+++|++|||.+|++|||+-+
T Consensus         6 ~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~   84 (90)
T d1t0ya_           6 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   84 (90)
T ss_dssp             EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeC
Confidence            455554 33445678899999999999999999999999999999886       345788999999999999999644

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=6.8e-11  Score=87.33  Aligned_cols=74  Identities=16%  Similarity=0.401  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (457)
Q Consensus         1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~   74 (457)
                      |.|.|++.+|+.+.+.|.+++++..|++...++.|+|+++++|+|+|+.|.++.|++++++.++++|+++++..
T Consensus         3 I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~   76 (77)
T d2uyzb1           3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT   76 (77)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999987654

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.98  E-value=6.2e-10  Score=84.51  Aligned_cols=71  Identities=15%  Similarity=0.229  Sum_probs=59.9

Q ss_pred             EEEEEc-cCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCc-------cccccCcccccccccCCcceeEEE
Q 012736           78 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVLR  148 (457)
Q Consensus        78 ~i~vk~-~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~-------~L~d~~tl~~y~i~~~s~i~l~~~  148 (457)
                      .+.|.+ .++......++++.||.+||++|+...|+|++.|+|+|.|+       .++|+++|.+|||.+|++||++-+
T Consensus         6 ~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~   84 (90)
T d1t0ya_           6 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   84 (90)
T ss_dssp             EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeC
Confidence            455543 23445677799999999999999999999999999999887       457889999999999999999653

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.3e-08  Score=70.20  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=66.2

Q ss_pred             eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012736          381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~  450 (457)
                      +.|.|+..+|+...+.|.+++++..|....++..|+++...+++|+|..+.++.|.+++|+++|++|.+.
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            3577888899999999999999999999999999999999999999999999999999999999999874

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.47  E-value=1.3e-07  Score=69.07  Aligned_cols=69  Identities=23%  Similarity=0.288  Sum_probs=56.6

Q ss_pred             eEEEcCCCCEEEEEec-CCccHHHHHHHHhhhcCCCCCCeEEEEc--------------CeecCCC-CcccccCCCCCCE
Q 012736          383 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA--------------GKQLEDG-RTLADYNIQKEST  446 (457)
Q Consensus       383 i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~l~~~--------------g~~L~d~-~tL~~~~i~~~~~  446 (457)
                      |.|++.+| +.-++|+ ++.||.+||.+|++..+||.+.|.|..+              -..|.|+ .+|++|||.+||.
T Consensus         3 iRiRsrdG-~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDG-LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSC-EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCC-ceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            56788888 6789996 4789999999999999999999999654              2235444 5799999999999


Q ss_pred             EEEEEe
Q 012736          447 LHLVLR  452 (457)
Q Consensus       447 i~l~~r  452 (457)
                      ||+...
T Consensus        82 vyL~y~   87 (94)
T d1wf9a1          82 VYLAYE   87 (94)
T ss_dssp             EECCCS
T ss_pred             EEEEee
Confidence            998653

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.1e-06  Score=63.10  Aligned_cols=69  Identities=16%  Similarity=0.377  Sum_probs=64.5

Q ss_pred             eEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012736          230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  298 (457)
Q Consensus       230 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~  298 (457)
                      .+.|+..+|+.+.+.|.++++++.|....+++.++|+...+|+|+|+.+..+.|.+++++++|+.|.+.
T Consensus         3 ~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           3 NLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            466778899999999999999999999999999999999999999999999999999999999998653

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.05  E-value=2.7e-06  Score=62.05  Aligned_cols=69  Identities=22%  Similarity=0.271  Sum_probs=54.5

Q ss_pred             EEEEccCCcEEEEEEeC-CCCHHHHHHHHhhhhCCCCCCeEEEec--------------Ccccc-ccCcccccccccCCc
Q 012736           79 IFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFA--------------GKQLE-DGRTLADYNIQKEST  142 (457)
Q Consensus        79 i~vk~~~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~--------------g~~L~-d~~tl~~y~i~~~s~  142 (457)
                      |.|++.+| ...++|+. +.||.+||.+|++..++|.+.|.|..+              -..|. |..+|++++|.+||.
T Consensus         3 iRiRsrdG-~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDG-LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSC-EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCC-ceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            55677776 44778865 679999999999999999999999643              12244 456799999999999


Q ss_pred             ceeEEE
Q 012736          143 LHLVLR  148 (457)
Q Consensus       143 i~l~~~  148 (457)
                      +++...
T Consensus        82 vyL~y~   87 (94)
T d1wf9a1          82 VYLAYE   87 (94)
T ss_dssp             EECCCS
T ss_pred             EEEEee
Confidence            998753

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=2.1e-05  Score=55.58  Aligned_cols=70  Identities=19%  Similarity=0.211  Sum_probs=65.9

Q ss_pred             EEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEe
Q 012736          231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  300 (457)
Q Consensus       231 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~  300 (457)
                      |.|-..+|+..++.|.++.|+.++-+..++++|+.++++.|.|+++.++-+.+++..|+.+++.+.|+..
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~~   72 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   72 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEEc
Confidence            5677889999999999999999999999999999999999999999999999999999999999988753

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=0.0001  Score=51.92  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=65.4

Q ss_pred             eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~  451 (457)
                      |.|-+.+|+..++.|.|++|+.++-+..++++|+.+++-.|.|+++.|+-+..+...|+.+|+.+.|+-
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEE
Confidence            567788999999999999999999999999999999999999999999999999999999999999864

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.01  Score=42.73  Aligned_cols=71  Identities=18%  Similarity=0.290  Sum_probs=59.7

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE--cCeecC---CCCcccccCCCCCCEEEEEE
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVL  451 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~---d~~tL~~~~i~~~~~i~l~~  451 (457)
                      ..+|-|+.++|+...-...+++||.+|...|... +.+++...|.-  -.+.+.   .+.||++.|+-+.++|+|--
T Consensus         5 ~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq~   80 (82)
T d1h8ca_           5 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   80 (82)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEEe
Confidence            3568899999999999999999999999999874 78888888774  566774   45699999999999988754

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0082  Score=43.22  Aligned_cols=70  Identities=20%  Similarity=0.369  Sum_probs=58.9

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL  375 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~~  375 (457)
                      ..|-|+..+|..+.-..+.++|+.+|..-+... +.++..-.|.  |..+.+   +.+.+|.+.|+-+.++|++..
T Consensus         6 ~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq~   80 (82)
T d1h8ca_           6 SKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   80 (82)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEEe
Confidence            358889999999999999999999999999875 6666666666  677777   457899999999999998864

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.88  E-value=0.015  Score=42.49  Aligned_cols=68  Identities=18%  Similarity=0.308  Sum_probs=55.2

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhc-CCCCCCeEEEEc--CeecC-CCCcccccCCCCCCEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFA--GKQLE-DGRTLADYNIQKESTL  447 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~-gip~~~q~l~~~--g~~L~-d~~tL~~~~i~~~~~i  447 (457)
                      +...|-|+.++|+.....+++++||.+|...+.... +.+...+.|+..  .+.|. ++.||.++|+.+ +.|
T Consensus        13 p~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~-s~v   84 (89)
T d1i42a_          13 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLN-AVI   84 (89)
T ss_dssp             CCEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCC-SEE
T ss_pred             CcEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcC-ceE
Confidence            345788899999999999999999999999998754 677777888764  56785 456999999985 555

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.78  E-value=0.059  Score=39.10  Aligned_cols=65  Identities=18%  Similarity=0.325  Sum_probs=52.6

Q ss_pred             eeeeEeeccCceEEeeecCCchHHHHHHHHhhhh-CCCCCceEEEEC--Ceec-CCCCCccccCcCcCc
Q 012736          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFA--GKQL-EDGRTLADYNIQKES  217 (457)
Q Consensus       153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~q~L~~~--g~~L-~d~~tL~~y~i~~~~  217 (457)
                      ..|.|+.++|..+...+..+++|.+|.+.+.... +.+.....|+..  .+.+ +++.||.+.|+.+..
T Consensus        15 t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s~   83 (89)
T d1i42a_          15 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAV   83 (89)
T ss_dssp             EEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCSE
T ss_pred             EEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCce
Confidence            4677889999999999999999999999998754 566666888754  5677 557899999998543

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.70  E-value=0.042  Score=40.56  Aligned_cols=73  Identities=18%  Similarity=0.231  Sum_probs=56.7

Q ss_pred             cceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeec--CCCCCccccCcCcCcEEEEEEE
Q 012736          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--EDGRTLADYNIQKESTLHLVLR  224 (457)
Q Consensus       151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L--~d~~tL~~y~i~~~~~i~l~~~  224 (457)
                      +.+.|.|+.++|+.+.-....++||.+|...+... +......+|+  |-.+.+  +.+.||.+.|+.+..+++|--+
T Consensus        15 ~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~~   91 (96)
T d2cr5a1          15 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK   91 (96)
T ss_dssp             SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred             CeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEecC
Confidence            34678888999999999999999999999999765 3445566776  334565  3468999999999988876543

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.042  Score=42.71  Aligned_cols=71  Identities=17%  Similarity=0.277  Sum_probs=57.2

Q ss_pred             CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE--cCeecC---CCCcccccCCCCCCEEEEE
Q 012736          379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLV  450 (457)
Q Consensus       379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~---d~~tL~~~~i~~~~~i~l~  450 (457)
                      +..+|-||..+|+.+.-.+..++||.+|...|... +.+.....|+.  --+.|.   .+.||.++|+-+..+|+|-
T Consensus        42 p~~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~ve  117 (124)
T d1wj4a_          42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEE
Confidence            34678899999999999999999999999999875 55666777664  455663   4579999999998888764

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.071  Score=41.30  Aligned_cols=70  Identities=17%  Similarity=0.301  Sum_probs=56.4

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL  375 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~~  375 (457)
                      ..|.|+..+|+.+...++.++|+.+|...+.... .+...-.|.  |....|   +.+.+|.+.|+-+..+|++..
T Consensus        44 ~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~~-~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee  118 (124)
T d1wj4a_          44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSKG-YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHH-CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcc-cCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEe
Confidence            3678899999999999999999999999998763 344444444  666776   457899999999999998864

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.94  E-value=0.075  Score=39.07  Aligned_cols=71  Identities=17%  Similarity=0.201  Sum_probs=55.1

Q ss_pred             eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec--cCCCcccccccccCceEEEEEE
Q 012736          305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--EDGRTLADYNIQKESTLHLVLR  376 (457)
Q Consensus       305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L--~d~~~l~~~~i~~~~~l~l~~~  376 (457)
                      ..|.|+..+|..+.-..+.++|+.+|..-+.....- ...-.|.  +....+  +.+.+|.++|+.+..+|++..+
T Consensus        17 ~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~~~~-~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~~   91 (96)
T d2cr5a1          17 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYH-KSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK   91 (96)
T ss_dssp             EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTCC-TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCcccHHHHHHHHHHhccC-cccceeecCCCceecCccCCCcHHHCCCCCCCEEEEecC
Confidence            367788999999999999999999999999876443 3333444  555555  4578999999999999888754

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.66  E-value=1.2  Score=31.29  Aligned_cols=68  Identities=15%  Similarity=0.263  Sum_probs=52.1

Q ss_pred             eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCe-EEEeCCcc-----cCCCccccccccCCCCeEEE
Q 012736          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQ-----LEDGRTLADYNIQKESTLHL  297 (457)
Q Consensus       229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q-~L~~~g~~-----L~d~~tl~~~~i~~~~tl~l  297 (457)
                      ++|.|..+++ ++.+.+++..+..+|=.++++..+|....+ -|.|.+..     |+.++.+..+..+.+..+.+
T Consensus         2 ~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~l   75 (84)
T d1ef1a3           2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF   75 (84)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred             EEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEEE
Confidence            5677888987 599999999999999999999999865553 36654222     77888998887666654433

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.43  E-value=1.1  Score=31.57  Aligned_cols=73  Identities=15%  Similarity=0.228  Sum_probs=56.1

Q ss_pred             ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCC-CCeEEEEcCe-----ecCCCCcccccCCCCCCEEEEEEec
Q 012736          380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGK-----QLEDGRTLADYNIQKESTLHLVLRL  453 (457)
Q Consensus       380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~l~~~g~-----~L~d~~tL~~~~i~~~~~i~l~~r~  453 (457)
                      +|++.|..+++ ...+.+++.++..+|-..|++..|+.. +-+=|.|-+.     =|+.++.|..+.++.+....+..|.
T Consensus         1 t~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~l~F~V   79 (84)
T d1ef1a3           1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA   79 (84)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred             CEEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEEEEEEE
Confidence            46788899987 589999999999999999999999864 4445665422     3677888988877777766666554

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.98  E-value=1.9  Score=30.35  Aligned_cols=66  Identities=9%  Similarity=0.241  Sum_probs=47.4

Q ss_pred             ceeeEEEcCC------C-CEEEEEecCCccHHHHHHHHhhhcCC-----------CCCCeEEEEcCeecCCCCcccccCC
Q 012736          380 GMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNI  441 (457)
Q Consensus       380 ~~~i~v~~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~gi-----------p~~~q~l~~~g~~L~d~~tL~~~~i  441 (457)
                      +|+|.|+...      | ....++++.+.||.+|...+.++++-           .....++..||+...++.     -+
T Consensus         1 smkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~d~-----~L   75 (88)
T d1vjka_           1 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE-----EL   75 (88)
T ss_dssp             CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC-----BC
T ss_pred             CeEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCCCc-----Cc
Confidence            4778887542      3 46788999999999999999887531           223456777888776544     46


Q ss_pred             CCCCEEEEE
Q 012736          442 QKESTLHLV  450 (457)
Q Consensus       442 ~~~~~i~l~  450 (457)
                      ++|+.|.+.
T Consensus        76 ~~gDevai~   84 (88)
T d1vjka_          76 KDGDVVGVF   84 (88)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEe
Confidence            678888764

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.94  E-value=1.3  Score=30.13  Aligned_cols=49  Identities=12%  Similarity=0.065  Sum_probs=40.7

Q ss_pred             eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE--cC--eecC
Q 012736          383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AG--KQLE  431 (457)
Q Consensus       383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~--~g--~~L~  431 (457)
                      +.+--++|+...+.|.|+.|+.++-.++.++-|++++...++.  +|  +++.
T Consensus         3 iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~~~~~g~~~~i~   55 (73)
T d1wxma1           3 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTA   55 (73)
T ss_dssp             EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEEC
T ss_pred             EEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcceee
Confidence            3455678888899999999999999999999999999988764  45  3554

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.36  E-value=3  Score=29.12  Aligned_cols=68  Identities=12%  Similarity=0.166  Sum_probs=51.5

Q ss_pred             eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeE-EEeC--Ccc--cCCCccccccccCCCCeEEE
Q 012736          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFA--GKQ--LEDGRTLADYNIQKESTLHL  297 (457)
Q Consensus       229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~-L~~~--g~~--L~d~~tl~~~~i~~~~tl~l  297 (457)
                      +.+.|...++ +++++++...+-.+|-.++++..+|...++. |.|-  |..  |+.++.+..+.++.+..+.+
T Consensus         3 ~~v~V~lLD~-~le~~v~~~a~G~~L~d~Vc~~L~L~E~~YFGL~y~~~~~~~WLd~~k~l~kq~~~~~~~~~~   75 (84)
T d1h4ra3           3 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTF   75 (84)
T ss_dssp             EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEE
T ss_pred             EEEEEEEcCC-cEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEecCCceEEccCCCchhhhccCCCCCEEE
Confidence            4567888887 5899999999999999999999998665533 5542  322  67788888887776665544

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.22  E-value=1.9  Score=29.95  Aligned_cols=47  Identities=13%  Similarity=0.193  Sum_probs=40.9

Q ss_pred             eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCC
Q 012736          229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  275 (457)
Q Consensus       229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g  275 (457)
                      |+-.|+....=|+.+.+.++.....|+++|.++++++++.-.|-|..
T Consensus         4 ~~~~vkVh~~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~~   50 (82)
T d1oeya_           4 MAYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (82)
T ss_dssp             SCEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             CCEEEEEEEEEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEecc
Confidence            45566776667888999999999999999999999999999999963