Citrus Sinensis ID: 012743

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
MLDVVQEEAAPVTRNMSNKKKELLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRILMNYLDYQVDGNRLSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGMYRAIDIYLKVHYEQFLHFSNLIYH
cccccccccccccccccccccHHHHHHHHHcccccccccccccEEEEEccEEEEEEcHHHHcccHHHHHHHcccccccccEEEcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHcHHHHHHHHHHccc
cccccccccccccHHHccccccHcHHHHHccccEEEEccccccEEEEEccEEEEEcccccccccHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccEEcHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHcccccccHHHHHHHHHHHccHHHHHHHccccc
MLDVVQEEaapvtrnmsNKKKELLSTAMKRTSewifsqeipsdvtvhvggtsfslhkfplvskcgyirklvsvsseadlsvieipdvpggaEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHksqgllpiaEKVKLVGQCIDAIAYIACkenqfsgsgraesgtdnaisdmvshpktiVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLevfgkgrkkiephqeheKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDdllipaysftgdtlfdVDTVHRILMNYLdyqvdgnrlsfsgdneyvssplsdMERVGKLMENYLAEIATDRNLSVAKFISLAelipeqsritedGMYRAIDIYLKVHYEQFLHFSNLIYH
mldvvqeeaapvtrnmsnkkkeLLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGkgrkkiephqehekrvVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRILMNYLDYQVDGNRLSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAelipeqsriteDGMYRAIDIYLKVHYEQFLHFSNLIYH
MLDVVQEEAAPVTRNMSNKKKELLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRILMNYLDYQVDGNRLSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGMYRAIDIYLKVHYEQFLHFSNLIYH
*******************************SEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKEN******************MVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKGR**********KRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRILMNYLDYQVDGNRLSFSGDNEYV******MERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGMYRAIDIYLKVHYEQFLHFSNLIY*
*********************************WIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIR**************EIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQFSG***********************DWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGL*****************KRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRILMNYL**************************RVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGMYRAIDIYLKVHYEQFLHFSNLIYH
MLDVVQEEAAPVTRNMSNKKKELLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQF*********TDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRILMNYLDYQVDGNRLSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGMYRAIDIYLKVHYEQFLHFSNLIYH
*****************************RTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSGR*****************TIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLE*************EHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRILMNYLDYQV*****************LSDMERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGMYRAIDIYLKVHYEQFLHFSNLIYH
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MLDVVQEEAAPVTRNMSNKKKELLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRILMNYLDYQVDGNRLSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGMYRAIDIYLKVHYEQFLHFSNLIYH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query457 2.2.26 [Sep-21-2011]
Q66GP0 604 BTB/POZ domain-containing yes no 0.925 0.700 0.742 0.0
Q9SN21 526 Putative BTB/POZ domain-c no no 0.774 0.673 0.624 1e-138
Q9FKB6 614 BTB/POZ domain-containing no no 0.894 0.666 0.469 1e-106
Q682S0 593 Root phototropism protein no no 0.875 0.674 0.406 1e-96
Q9SA69 634 BTB/POZ domain-containing no no 0.903 0.651 0.427 2e-93
O82253 635 BTB/POZ domain-containing no no 0.890 0.640 0.431 7e-92
Q9C9Z7 617 BTB/POZ domain-containing no no 0.877 0.649 0.441 5e-89
Q9S9Q9 665 BTB/POZ domain-containing no no 0.908 0.624 0.371 5e-78
Q9C9Z0 582 Putative BTB/POZ domain-c no no 0.833 0.654 0.395 9e-73
Q9FNB3 591 Putative BTB/POZ domain-c no no 0.879 0.680 0.364 3e-72
>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2 Back     alignment and function desciption
 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/431 (74%), Positives = 374/431 (86%), Gaps = 8/431 (1%)

Query: 16  MSNKKKELLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSS 75
           MS KKK+LLS+AMKRTSEWI SQE+ SDVTVHVG  SFSLHKFPL+SKCG+I+KLVS SS
Sbjct: 1   MSAKKKDLLSSAMKRTSEWISSQEVSSDVTVHVGEASFSLHKFPLMSKCGFIKKLVSESS 60

Query: 76  -EADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNL 134
            ++D +VI+IPD+PGG+EAFELAAKFCYGINF+++TEN+A LRC AEYLEMTE+++V NL
Sbjct: 61  KDSDSTVIKIPDIPGGSEAFELAAKFCYGINFDMSTENIAMLRCAAEYLEMTEEHSVENL 120

Query: 135 VGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSG 194
           V RAEAYLNEVAL SL+ ++TVLHKS+ LLPIAE+VKLV +CIDAIAY+ C+E+ F    
Sbjct: 121 VVRAEAYLNEVALKSLSSSITVLHKSEKLLPIAERVKLVSRCIDAIAYMTCQESHFCSPS 180

Query: 195 RAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLY 254
            + SG +  +    S  + +VDWWAEDLTVLRID FQRVLIAMMARGFKQY LGPVLMLY
Sbjct: 181 SSNSGNNEVVVQQQSK-QPVVDWWAEDLTVLRIDSFQRVLIAMMARGFKQYGLGPVLMLY 239

Query: 255 AQKSLRGLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLE 314
           AQKSLRGLE+FGKG KKIEP QEHEKRV+LETIVSLLPRE+NAMSVSFLS+LLRAAI+LE
Sbjct: 240 AQKSLRGLEIFGKGMKKIEPKQEHEKRVILETIVSLLPREKNAMSVSFLSMLLRAAIFLE 299

Query: 315 TTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGD-TLFDVDTVHRILMNYLDYQVDGNR 373
           TTVACRLDLE RM LQLGQAVLDDLLIP+YSFTGD ++FD DTV RILMNYL+++V+G R
Sbjct: 300 TTVACRLDLENRMGLQLGQAVLDDLLIPSYSFTGDHSMFDTDTVQRILMNYLEFEVEGVR 359

Query: 374 LSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGM 433
           LS +G +        DMERVGKL+ENY+AEIA+DRN+S+ KFI LAELIPEQSR+TEDGM
Sbjct: 360 LSNNGVD-----LAGDMERVGKLLENYMAEIASDRNVSLQKFIGLAELIPEQSRVTEDGM 414

Query: 434 YRAIDIYLKVH 444
           YRA+DIYLK H
Sbjct: 415 YRAVDIYLKAH 425
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SN21|Y3997_ARATH Putative BTB/POZ domain-containing protein At3g49970 OS=Arabidopsis thaliana GN=At3g49970 PE=3 SV=1 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q682S0|RPT2_ARATH Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2 Back     alignment and function description
>sp|Q9SA69|Y1301_ARATH BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1 Back     alignment and function description
>sp|O82253|SETH6_ARATH BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9C9Z0|Y3866_ARATH Putative BTB/POZ domain-containing protein At3g08660 OS=Arabidopsis thaliana GN=At3g08660 PE=3 SV=1 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
359480578 636 PREDICTED: BTB/POZ domain-containing pro 0.971 0.698 0.835 0.0
147772913 621 hypothetical protein VITISV_007563 [Viti 0.938 0.690 0.843 0.0
255584886 621 Root phototropism protein, putative [Ric 0.940 0.692 0.825 0.0
356496967 618 PREDICTED: BTB/POZ domain-containing pro 0.969 0.716 0.783 0.0
356540639 617 PREDICTED: BTB/POZ domain-containing pro 0.967 0.716 0.778 0.0
296087341529 unnamed protein product [Vitis vinifera] 0.890 0.769 0.811 0.0
357453659 630 Root phototropism protein [Medicago trun 0.969 0.703 0.750 0.0
449463961 621 PREDICTED: BTB/POZ domain-containing pro 0.921 0.677 0.782 0.0
449518248 802 PREDICTED: BTB/POZ domain-containing pro 0.921 0.524 0.782 0.0
79579427 604 phototropic-responsive NPH3-like protein 0.925 0.700 0.742 0.0
>gi|359480578|ref|XP_002284242.2| PREDICTED: BTB/POZ domain-containing protein At5g67385-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/444 (83%), Positives = 405/444 (91%)

Query: 1   MLDVVQEEAAPVTRNMSNKKKELLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPL 60
           M+D+ QE  AP T NMS+KKKELLSTAMKRTSEWIFSQEIPSDVTVH G  SFSLHKFPL
Sbjct: 1   MVDLQQEGIAPTTVNMSSKKKELLSTAMKRTSEWIFSQEIPSDVTVHAGEVSFSLHKFPL 60

Query: 61  VSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVA 120
           VSKCGYIRKLVS SS+ADLSVIE+ DVPGGAEAFELAAKFCYGINFEI+TEN+A LRCVA
Sbjct: 61  VSKCGYIRKLVSESSDADLSVIEVHDVPGGAEAFELAAKFCYGINFEISTENIAMLRCVA 120

Query: 121 EYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAI 180
           EYLEMTEDY+VGNLVGRAEAYLNEVAL SL GAVT+LH S+ LLP+AEKVK+V +CIDAI
Sbjct: 121 EYLEMTEDYSVGNLVGRAEAYLNEVALKSLAGAVTILHLSEALLPMAEKVKVVSRCIDAI 180

Query: 181 AYIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMAR 240
           AYIACKE+QFS SGR ESGTD   S +VSHPK IVDWWAEDL VLRID+FQRVLIAMMAR
Sbjct: 181 AYIACKESQFSMSGRVESGTDLLNSSLVSHPKHIVDWWAEDLIVLRIDIFQRVLIAMMAR 240

Query: 241 GFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSV 300
           GFKQYALGP+LMLYAQKSLRGLEVFGKGRKKIEP QEHEKRV+LETIVSLLPRE+NAMSV
Sbjct: 241 GFKQYALGPILMLYAQKSLRGLEVFGKGRKKIEPKQEHEKRVILETIVSLLPREKNAMSV 300

Query: 301 SFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRI 360
           SFLS+LLRAAIYLETTVACRLDLEKRM LQLGQAVLDDLLIP++SFTGD LFDVDTV RI
Sbjct: 301 SFLSMLLRAAIYLETTVACRLDLEKRMGLQLGQAVLDDLLIPSFSFTGDLLFDVDTVQRI 360

Query: 361 LMNYLDYQVDGNRLSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAE 420
           +MNYL+ + +GN  S+  D EYVS P SD+ERVGKLME+YLAEIA+DRNL+V+KFISLAE
Sbjct: 361 MMNYLECETNGNPFSYKADEEYVSPPPSDLERVGKLMESYLAEIASDRNLNVSKFISLAE 420

Query: 421 LIPEQSRITEDGMYRAIDIYLKVH 444
           L+PEQSR+ EDGMYRAIDIYLK H
Sbjct: 421 LLPEQSRVKEDGMYRAIDIYLKAH 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147772913|emb|CAN71562.1| hypothetical protein VITISV_007563 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255584886|ref|XP_002533158.1| Root phototropism protein, putative [Ricinus communis] gi|223527030|gb|EEF29217.1| Root phototropism protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356496967|ref|XP_003517336.1| PREDICTED: BTB/POZ domain-containing protein At5g67385-like [Glycine max] Back     alignment and taxonomy information
>gi|356540639|ref|XP_003538794.1| PREDICTED: BTB/POZ domain-containing protein At5g67385-like [Glycine max] Back     alignment and taxonomy information
>gi|296087341|emb|CBI33715.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357453659|ref|XP_003597110.1| Root phototropism protein [Medicago truncatula] gi|357482677|ref|XP_003611625.1| Root phototropism protein [Medicago truncatula] gi|355486158|gb|AES67361.1| Root phototropism protein [Medicago truncatula] gi|355512960|gb|AES94583.1| Root phototropism protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449463961|ref|XP_004149698.1| PREDICTED: BTB/POZ domain-containing protein At5g67385-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449518248|ref|XP_004166154.1| PREDICTED: BTB/POZ domain-containing protein At5g67385-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|79579427|ref|NP_680473.2| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] gi|338819811|sp|Q66GP0.2|Y5738_ARATH RecName: Full=BTB/POZ domain-containing protein At5g67385 gi|332010953|gb|AED98336.1| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
TAIR|locus:504954965 604 AT5G67385 [Arabidopsis thalian 0.925 0.700 0.742 2.6e-166
TAIR|locus:2156524 614 AT5G48800 [Arabidopsis thalian 0.899 0.669 0.469 1.1e-96
TAIR|locus:2083103 526 AT3G49970 [Arabidopsis thalian 0.719 0.625 0.563 1.2e-88
TAIR|locus:2077763 617 AT3G08570 [Arabidopsis thalian 0.875 0.648 0.443 3.9e-83
TAIR|locus:2173418 746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.407 0.249 0.408 8.7e-79
TAIR|locus:2064357 593 RPT2 "ROOT PHOTOTROPISM 2" [Ar 0.884 0.681 0.396 2.1e-77
TAIR|locus:2200286 631 AT1G67900 [Arabidopsis thalian 0.708 0.513 0.376 7.7e-68
TAIR|locus:2007564 634 AT1G03010 [Arabidopsis thalian 0.785 0.566 0.401 1.5e-67
TAIR|locus:2154920 668 AT5G66560 [Arabidopsis thalian 0.778 0.532 0.372 9.8e-66
TAIR|locus:2082132 651 AT3G44820 [Arabidopsis thalian 0.595 0.417 0.307 8.4e-62
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1618 (574.6 bits), Expect = 2.6e-166, P = 2.6e-166
 Identities = 320/431 (74%), Positives = 374/431 (86%)

Query:    16 MSNKKKELLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSS 75
             MS KKK+LLS+AMKRTSEWI SQE+ SDVTVHVG  SFSLHKFPL+SKCG+I+KLVS SS
Sbjct:     1 MSAKKKDLLSSAMKRTSEWISSQEVSSDVTVHVGEASFSLHKFPLMSKCGFIKKLVSESS 60

Query:    76 -EADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNL 134
              ++D +VI+IPD+PGG+EAFELAAKFCYGINF+++TEN+A LRC AEYLEMTE+++V NL
Sbjct:    61 KDSDSTVIKIPDIPGGSEAFELAAKFCYGINFDMSTENIAMLRCAAEYLEMTEEHSVENL 120

Query:   135 VGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSG 194
             V RAEAYLNEVAL SL+ ++TVLHKS+ LLPIAE+VKLV +CIDAIAY+ C+E+ F    
Sbjct:   121 VVRAEAYLNEVALKSLSSSITVLHKSEKLLPIAERVKLVSRCIDAIAYMTCQESHFCSPS 180

Query:   195 RAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLY 254
              + SG +  +    S  + +VDWWAEDLTVLRID FQRVLIAMMARGFKQY LGPVLMLY
Sbjct:   181 SSNSGNNEVVVQQQSK-QPVVDWWAEDLTVLRIDSFQRVLIAMMARGFKQYGLGPVLMLY 239

Query:   255 AQKSLRGLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLE 314
             AQKSLRGLE+FGKG KKIEP QEHEKRV+LETIVSLLPRE+NAMSVSFLS+LLRAAI+LE
Sbjct:   240 AQKSLRGLEIFGKGMKKIEPKQEHEKRVILETIVSLLPREKNAMSVSFLSMLLRAAIFLE 299

Query:   315 TTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGD-TLFDVDTVHRILMNYLDYQVDGNR 373
             TTVACRLDLE RM LQLGQAVLDDLLIP+YSFTGD ++FD DTV RILMNYL+++V+G R
Sbjct:   300 TTVACRLDLENRMGLQLGQAVLDDLLIPSYSFTGDHSMFDTDTVQRILMNYLEFEVEGVR 359

Query:   374 LSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGM 433
             LS +G +        DMERVGKL+ENY+AEIA+DRN+S+ KFI LAELIPEQSR+TEDGM
Sbjct:   360 LSNNGVDL-----AGDMERVGKLLENYMAEIASDRNVSLQKFIGLAELIPEQSRVTEDGM 414

Query:   434 YRAIDIYLKVH 444
             YRA+DIYLK H
Sbjct:   415 YRAVDIYLKAH 425
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083103 AT3G49970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064357 RPT2 "ROOT PHOTOTROPISM 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007564 AT1G03010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q66GP0Y5738_ARATHNo assigned EC number0.74240.92560.7003yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
pfam03000249 pfam03000, NPH3, NPH3 family 1e-104
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-09
pfam00651101 pfam00651, BTB, BTB/POZ domain 8e-08
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  311 bits (798), Expect = e-104
 Identities = 115/229 (50%), Positives = 150/229 (65%), Gaps = 6/229 (2%)

Query: 216 DWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIEPH 275
           DWW EDL+ L ID+F+RV+ AM +RG K   +G  LM YA+K L GL   G      E  
Sbjct: 2   DWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSRSGSS----EED 57

Query: 276 QEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAV 335
            E E+R +LETIVSLLP E+ ++S SFL  LLRAAI L  + +CR +LE+R+ LQL QA 
Sbjct: 58  SEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERRIGLQLDQAT 117

Query: 336 LDDLLIPAYSFTGDTLFDVDTVHRILMNYLDYQVDGNRLSFSGDNEYVSSPLSDMERVGK 395
           LDDLLIP+     +TL+DVD V RIL  +L    D    S   ++   S   S + +V K
Sbjct: 118 LDDLLIPSGYSGEETLYDVDLVQRILEVFLSR--DAATQSSDDEDSEASPSSSSLLKVAK 175

Query: 396 LMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGMYRAIDIYLKVH 444
           L++ YLAEIA D NL ++KFI+LAE +P+ +R + DG+YRAIDIYLK H
Sbjct: 176 LVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAH 224

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 457
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 100.0
PHA02713 557 hypothetical protein; Provisional 100.0
PHA02790 480 Kelch-like protein; Provisional 99.96
PHA03098 534 kelch-like protein; Provisional 99.96
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.75
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.65
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.63
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.45
KOG4591280 consensus Uncharacterized conserved protein, conta 99.31
KOG4682488 consensus Uncharacterized conserved protein, conta 98.98
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.86
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.25
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 98.0
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.81
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 97.4
KOG2716230 consensus Polymerase delta-interacting protein PDI 97.07
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.05
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.88
KOG2838401 consensus Uncharacterized conserved protein, conta 96.1
KOG3473112 consensus RNA polymerase II transcription elongati 95.82
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.53
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 93.29
KOG3840438 consensus Uncharaterized conserved protein, contai 89.71
KOG2838401 consensus Uncharacterized conserved protein, conta 88.98
KOG0511516 consensus Ankyrin repeat protein [General function 88.45
KOG2714465 consensus SETA binding protein SB1 and related pro 87.56
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 85.59
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 82.07
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=7.1e-76  Score=574.97  Aligned_cols=236  Identities=47%  Similarity=0.705  Sum_probs=206.6

Q ss_pred             cccchhhcccCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhhccccccCCCC---CCCCccchHHHHHHHHHHHHhc
Q 012743          215 VDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKGR---KKIEPHQEHEKRVVLETIVSLL  291 (457)
Q Consensus       215 ~~ww~eDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~yak~~l~~~~~~~~~~---~~~~~~~~~~~r~LLE~Iv~lL  291 (457)
                      ++||+||++.|++++|+|||.+|+++|+++++|+++|++|+++|+|+..+..+..   .........++|.+||+||+||
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL   80 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL   80 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence            4899999999999999999999999999999999999999999999985432221   1223456789999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhccChHhHHHHHHHHHhhhccCCccccccccCCCCCCccccHHHHHHHHHHHhccccCC
Q 012743          292 PRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRILMNYLDYQVDG  371 (457)
Q Consensus       292 p~e~~~vs~~fL~~lLr~a~~l~aS~~Cr~~LE~rig~qLd~AtldDLLiPs~~~~~~~~yDVd~V~ril~~Fl~~~~~~  371 (457)
                      |.|++++||+|||+|||+|+++++|..||.+||+|||+|||||||||||||+.+...+|+||||+|+|||++||.++++.
T Consensus        81 P~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~~  160 (258)
T PF03000_consen   81 PPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEEA  160 (258)
T ss_pred             CCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999993334459999999999999999986532


Q ss_pred             CCCccCCCCCCCCCCchhhhHHHhhhhhhhhhhcCCCCCChhHHHHHHHhcCCccccCCCchhHHHHHHHhhccchhhh
Q 012743          372 NRLSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGMYRAIDIYLKVHYEQFLH  450 (457)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lPd~aR~~~DgLYrAIDiYLk~Hp~l~~~  450 (457)
                      +............++.+++.+||||||+||+|||+|+||||+||++|||++|++||++|||||||||||||+||+|+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~~  239 (258)
T PF03000_consen  161 GEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSEE  239 (258)
T ss_pred             ccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCHH
Confidence            1111111111125678899999999999999999999999999999999999999999999999999999999999875

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 7e-11
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 9e-11
2vpk_A116 Myoneurin; transcription regulation, transcription 8e-10
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 1e-09
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 2e-09
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 3e-09
3b84_A119 Zinc finger and BTB domain-containing protein 48; 5e-09
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 6e-09
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 9e-09
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 2e-08
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-07
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 3e-07
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 7e-07
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 2e-05
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 4e-05
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 4e-04
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 67.6 bits (164), Expect = 4e-12
 Identities = 63/371 (16%), Positives = 120/371 (32%), Gaps = 94/371 (25%)

Query: 116 LRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQ 175
           L C  + L  T    V + +  A            T  +++ H S  L P  E   L+ +
Sbjct: 264 LSC--KILLTTRFKQVTDFLSAAT-----------TTHISLDHHSMTLTP-DEVKSLLLK 309

Query: 176 CIDAIAY----IACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQ 231
            +D             N    S  AES     I D ++                  D ++
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAES-----IRDGLA----------------TWDNWK 348

Query: 232 RVLIAMMARGFKQY--ALGPVLMLYAQKSLRGLEVFGKGRKKIEPH---------QEHEK 280
            V    +    +     L P      +K    L VF      I             + + 
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEY---RKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSDV 404

Query: 281 RVVLETIV--SLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRM--ALQLGQAV- 335
            VV+  +   SL+ ++    ++S  S+ L     L+  +     L + +     + +   
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLE----LKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 336 LDDLLIPA-----YSFTGDTLFDVDTVHRILMN---YLDYQVDGNRLSFSGDNEYVSSPL 387
            DDL+ P      YS  G  L +++   R+ +    +LD++    ++         S  +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 388 SDM------------------ERVGKLMENYLAEIATDRNLSVAKFISLAE--LIPEQSR 427
            +                   ER+   + ++L +I    NL  +K+  L    L+ E   
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE--NLICSKYTDLLRIALMAEDEA 578

Query: 428 ITEDGMYRAID 438
           I E+  ++ + 
Sbjct: 579 IFEEA-HKQVQ 588
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 100.0
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.9
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.9
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.89
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.88
2vpk_A116 Myoneurin; transcription regulation, transcription 99.88
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.88
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.88
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.88
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.87
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.87
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.87
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.87
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.86
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.86
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.86
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.85
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.85
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.81
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.51
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.3
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.21
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.03
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.46
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.43
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.39
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 98.37
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.88
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.88
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.72
3kvt_A115 Potassium channel protein SHAW; tetramerization do 96.09
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 95.14
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 94.91
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 94.06
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 94.01
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=100.00  E-value=3.1e-35  Score=285.45  Aligned_cols=235  Identities=12%  Similarity=0.123  Sum_probs=181.4

Q ss_pred             HHhhHHHHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCC-C--CCCCceEecCCCCCCHHHHHHHHHHHhCC
Q 012743           28 MKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-S--EADLSVIEIPDVPGGAEAFELAAKFCYGI  104 (457)
Q Consensus        28 ~~~~~~~~r~~~~~~DV~l~V~~~~F~~HK~vLaa~S~yfr~mf~~~-~--e~~~~~v~L~~~pGg~~~felvl~FcYt~  104 (457)
                      ..++.+.++.++.+|||+|.|||+.|++||.+|+++|+||++||+++ .  ++...+|.|++++  +++|+.+++|+|||
T Consensus        18 l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~   95 (256)
T 3hve_A           18 LLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSG   95 (256)
T ss_dssp             HHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCC
Confidence            44567789999999999999999999999999999999999999986 3  5677899999995  99999999999999


Q ss_pred             ccccCchhHhhHHHHHhhhccccccccchHHHHHHHHHHHHhhhchhhHHHHHhhhhchHHHHHHhchhhHHHHHHHHHH
Q 012743          105 NFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIA  184 (457)
Q Consensus       105 ~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v~~sw~~~i~~l~~C~~l~~~Ae~~~iv~rCidsLa~ka  184 (457)
                      ++.++.+||..++.||++|||++      |++.|++||.+.+         ...||.+++.+|+.|++     +.|..++
T Consensus        96 ~~~i~~~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l---------~~~n~~~i~~~A~~~~~-----~~L~~~~  155 (256)
T 3hve_A           96 QIRLNEDTIQDVVQAADLLLLTD------LKTLCCEFLEGCI---------AAENCIGIRDFALHYCL-----HHVHYLA  155 (256)
T ss_dssp             CCCCC-CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTC---------CSSTTHHHHHHHHHTTC-----HHHHHHH
T ss_pred             CCcccHhHHHHHHHHHHHHChHH------HHHHHHHHHHhhC---------CHhhHHHHHHHHHHcCc-----HHHHHHH
Confidence            99999999999999999999998      9999999999987         57799999999999983     6666666


Q ss_pred             hhccccCCCCCCCCCCCCccccCCCCCCcccccchhhcccCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhhccccc
Q 012743          185 CKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEV  264 (457)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~eDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~yak~~l~~~~~  264 (457)
                      .....                     .++...+-.++|..|+.+.+..+++.......+|+.|++++++|++++.+.+. 
T Consensus       156 ~~~i~---------------------~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~R~-  213 (256)
T 3hve_A          156 TEYLE---------------------THFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRK-  213 (256)
T ss_dssp             HHHHH---------------------HHHHHHTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CCST-
T ss_pred             HHHHH---------------------HHHHHHhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHHHH-
Confidence            54432                     01122334689999999999999998887777899999999999998766432 


Q ss_pred             cCCCCCCCCccchHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhhccC-hHhHHHHHH
Q 012743          265 FGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETT-VACRLDLEK  325 (457)
Q Consensus       265 ~~~~~~~~~~~~~~~~r~LLE~Iv~lLp~e~~~vs~~fL~~lLr~a~~l~aS-~~Cr~~LE~  325 (457)
                                   .+...|++.|+  +    +.+|+.||.+.++...+++.+ +.|+..|++
T Consensus       214 -------------~~~~~ll~~VR--f----~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          214 -------------VHMKDVMSALW--V----SGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             -------------TTHHHHHHHHH--H----HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             -------------HHHHHHHHhCC--C----CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence                         56789999999  4    779999999999999999998 789999875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 457
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 1e-10
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 3e-08
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 37  SQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRK-LVSVSSEADLSVIEIPDVPGGAEAFE 95
           S++I +DV + V    F  HK  L++  G                +   P++    E F 
Sbjct: 21  SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFN 78

Query: 96  LAAKFCYGINFEINTENVAGLRCVAEYLEMTE 127
           +   F Y     +   N+  +   A YL+M  
Sbjct: 79  ILLDFMYTSRLNLREGNIMAVMATAMYLQMEH 110
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.89
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.89
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.67
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.5
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.11
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.86
d1t1da_100 Shaker potassium channel {California sea hare (Apl 95.84
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 91.55
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 91.33
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.5e-24  Score=182.79  Aligned_cols=109  Identities=19%  Similarity=0.331  Sum_probs=98.7

Q ss_pred             HHhhHHHHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHHHHHhCCcc
Q 012743           28 MKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAFELAAKFCYGINF  106 (457)
Q Consensus        28 ~~~~~~~~r~~~~~~DV~l~V~~~~F~~HK~vLaa~S~yfr~mf~~~-~e~~~~~v~L~~~pGg~~~felvl~FcYt~~i  106 (457)
                      .-+..+.+|++|.+|||+|.|+|++|++||.+|+++|+||++||.+. .++....+.+++++  |++|+.+++|+|||++
T Consensus        12 ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~--~~~f~~ll~~~Ytg~~   89 (122)
T d1r29a_          12 VLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYTSRL   89 (122)
T ss_dssp             HHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccC--HHHHHHHHhhhcCCee
Confidence            34567889999999999999999999999999999999999999887 55555556667884  9999999999999999


Q ss_pred             ccCchhHhhHHHHHhhhccccccccchHHHHHHHHHHH
Q 012743          107 EINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNE  144 (457)
Q Consensus       107 ~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~  144 (457)
                      .++.+||..++.||++|||++      |++.|++||+.
T Consensus        90 ~i~~~~v~~ll~~A~~l~i~~------L~~~C~~~L~~  121 (122)
T d1r29a_          90 NLREGNIMAVMATAMYLQMEH------VVDTCRKFIKA  121 (122)
T ss_dssp             CCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred             cCchhhHHHHHHHHHHHCcHH------HHHHHHHHHHh
Confidence            999999999999999999997      99999999974
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure